Query 041804
Match_columns 403
No_of_seqs 577 out of 1594
Neff 11.9
Searched_HMMs 29240
Date Mon Mar 25 18:35:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041804.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041804hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.7E-34 9.1E-39 267.3 37.0 359 5-379 127-546 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4E-34 1.4E-38 266.1 34.5 362 3-379 158-580 (597)
3 4g26_A Pentatricopeptide repea 100.0 4.6E-33 1.6E-37 249.0 23.3 201 162-362 10-223 (501)
4 4g26_A Pentatricopeptide repea 100.0 6E-33 2E-37 248.2 23.0 202 87-294 10-222 (501)
5 1w3b_A UDP-N-acetylglucosamine 100.0 2.3E-29 7.8E-34 221.4 40.4 361 4-384 8-372 (388)
6 1w3b_A UDP-N-acetylglucosamine 100.0 1.4E-27 4.9E-32 209.9 38.0 345 3-364 41-388 (388)
7 2y4t_A DNAJ homolog subfamily 100.0 2.7E-24 9.3E-29 192.8 37.4 346 12-375 9-406 (450)
8 2gw1_A Mitochondrial precursor 99.9 1.2E-24 4.2E-29 198.4 34.5 371 3-386 14-484 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 2.7E-23 9.3E-28 186.3 36.5 318 50-384 11-362 (450)
10 2gw1_A Mitochondrial precursor 99.9 5.2E-22 1.8E-26 181.0 33.2 341 31-379 6-445 (514)
11 3ieg_A DNAJ homolog subfamily 99.9 6.9E-21 2.4E-25 165.2 38.5 307 30-378 2-335 (359)
12 3fp2_A TPR repeat-containing p 99.9 1.2E-21 4.1E-26 179.7 32.9 358 3-379 33-492 (537)
13 3ieg_A DNAJ homolog subfamily 99.9 3E-20 1E-24 161.2 37.4 281 66-378 2-301 (359)
14 3hym_B Cell division cycle pro 99.9 1.6E-20 5.5E-25 161.0 30.5 294 27-365 18-321 (330)
15 3fp2_A TPR repeat-containing p 99.9 1.8E-19 6.3E-24 165.1 36.7 342 30-379 24-458 (537)
16 1fch_A Peroxisomal targeting s 99.9 1.7E-20 5.6E-25 163.6 24.6 290 43-374 37-355 (368)
17 1fch_A Peroxisomal targeting s 99.9 5.7E-20 1.9E-24 160.2 26.9 301 7-340 37-356 (368)
18 3hym_B Cell division cycle pro 99.9 1.1E-19 3.7E-24 155.8 27.4 260 4-276 31-299 (330)
19 2xm6_A Protein corresponding t 99.9 4E-17 1.4E-21 147.6 40.7 337 8-381 56-435 (490)
20 4eqf_A PEX5-related protein; a 99.9 1.6E-19 5.6E-24 157.1 23.4 285 30-339 64-352 (365)
21 3cv0_A Peroxisome targeting si 99.8 1.6E-19 5.3E-24 154.6 21.7 253 7-272 33-311 (327)
22 4eqf_A PEX5-related protein; a 99.8 7.9E-20 2.7E-24 159.1 20.1 260 3-273 73-353 (365)
23 3cv0_A Peroxisome targeting si 99.8 4.2E-18 1.4E-22 145.7 25.8 281 30-376 20-313 (327)
24 2ooe_A Cleavage stimulation fa 99.8 3.7E-16 1.3E-20 142.8 39.4 355 6-377 23-491 (530)
25 2xm6_A Protein corresponding t 99.8 9.3E-16 3.2E-20 138.7 41.6 336 28-394 36-411 (490)
26 3mkr_A Coatomer subunit epsilo 99.8 4E-17 1.4E-21 136.6 29.7 247 77-343 9-264 (291)
27 4g1t_A Interferon-induced prot 99.8 3.7E-17 1.3E-21 147.4 31.2 364 2-387 58-469 (472)
28 3mkr_A Coatomer subunit epsilo 99.8 1.8E-17 6.3E-22 138.7 27.0 255 6-286 10-272 (291)
29 3spa_A Mtrpol, DNA-directed RN 99.8 1.8E-20 6.2E-25 173.1 9.1 116 142-257 127-246 (1134)
30 1b89_A Protein (clathrin heavy 99.8 1.3E-18 4.3E-23 149.1 18.8 286 2-336 10-304 (449)
31 3spa_A Mtrpol, DNA-directed RN 99.8 1.7E-19 5.8E-24 166.7 11.0 154 173-328 123-286 (1134)
32 1b89_A Protein (clathrin heavy 99.8 2.8E-18 9.6E-23 146.9 14.0 280 42-370 14-303 (449)
33 2pl2_A Hypothetical conserved 99.8 9.5E-17 3.3E-21 128.5 21.2 198 28-237 2-210 (217)
34 2pl2_A Hypothetical conserved 99.8 1E-16 3.4E-21 128.3 21.0 201 64-275 2-213 (217)
35 2ooe_A Cleavage stimulation fa 99.8 1.2E-14 4.2E-19 132.7 36.2 339 28-379 10-455 (530)
36 3uq3_A Heat shock protein STI1 99.7 8.9E-16 3E-20 126.4 23.9 225 31-276 5-236 (258)
37 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.9E-17 3.4E-21 133.6 17.7 226 4-241 14-244 (275)
38 3u4t_A TPR repeat-containing p 99.7 3.9E-15 1.3E-19 123.7 25.3 226 5-241 13-250 (272)
39 2ho1_A Type 4 fimbrial biogene 99.7 7.6E-15 2.6E-19 120.5 26.7 202 31-241 37-238 (252)
40 3uq3_A Heat shock protein STI1 99.7 5.4E-16 1.9E-20 127.7 19.9 220 2-241 12-236 (258)
41 4g1t_A Interferon-induced prot 99.7 4.7E-14 1.6E-18 127.0 34.1 325 29-377 49-400 (472)
42 2vq2_A PILW, putative fimbrial 99.7 6.5E-15 2.2E-19 118.5 25.6 204 30-241 7-211 (225)
43 2q7f_A YRRB protein; TPR, prot 99.7 1.1E-15 3.6E-20 124.8 20.6 203 29-242 21-223 (243)
44 2vq2_A PILW, putative fimbrial 99.7 7.5E-15 2.6E-19 118.1 25.0 212 65-286 6-219 (225)
45 1xnf_A Lipoprotein NLPI; TPR, 99.7 9.9E-16 3.4E-20 127.5 20.1 249 41-302 15-269 (275)
46 2h6f_A Protein farnesyltransfe 99.7 4.8E-15 1.6E-19 128.2 24.5 233 30-275 96-347 (382)
47 2ho1_A Type 4 fimbrial biogene 99.7 9.8E-15 3.3E-19 119.8 25.3 208 67-285 37-245 (252)
48 3u4t_A TPR repeat-containing p 99.7 4.4E-15 1.5E-19 123.4 23.3 236 30-276 2-250 (272)
49 2q7f_A YRRB protein; TPR, prot 99.7 2.1E-15 7.2E-20 123.0 20.2 194 2-207 30-223 (243)
50 2h6f_A Protein farnesyltransfe 99.7 2.5E-15 8.4E-20 130.0 20.3 241 2-258 104-364 (382)
51 1xi4_A Clathrin heavy chain; a 99.7 3.1E-13 1.1E-17 129.6 35.6 329 3-373 1057-1440(1630)
52 1ouv_A Conserved hypothetical 99.7 1.4E-13 4.7E-18 114.4 29.0 225 29-277 4-252 (273)
53 3e4b_A ALGK; tetratricopeptide 99.7 5.7E-15 1.9E-19 131.7 20.4 341 4-379 12-388 (452)
54 1xi4_A Clathrin heavy chain; a 99.7 6E-13 2.1E-17 127.7 33.4 283 34-369 1052-1375(1630)
55 1ouv_A Conserved hypothetical 99.6 7.1E-13 2.4E-17 110.1 28.3 222 140-379 4-252 (273)
56 3e4b_A ALGK; tetratricopeptide 99.6 2E-13 6.7E-18 121.7 25.2 340 1-378 41-421 (452)
57 3sf4_A G-protein-signaling mod 99.6 4.9E-14 1.7E-18 124.2 21.1 309 28-365 6-363 (406)
58 3vtx_A MAMA; tetratricopeptide 99.6 8.9E-14 3E-18 108.2 20.2 167 30-206 4-170 (184)
59 3sf4_A G-protein-signaling mod 99.6 1.5E-13 5.1E-18 121.0 24.1 286 64-378 6-336 (406)
60 2ond_A Cleavage stimulation fa 99.6 6.6E-13 2.3E-17 112.3 27.0 218 48-276 33-270 (308)
61 2ond_A Cleavage stimulation fa 99.6 2.7E-13 9.1E-18 114.7 24.6 219 12-242 33-271 (308)
62 4a1s_A PINS, partner of inscut 99.6 4.2E-14 1.4E-18 124.9 20.4 282 68-378 49-372 (411)
63 4a1s_A PINS, partner of inscut 99.6 7.7E-14 2.6E-18 123.2 21.8 283 31-343 48-372 (411)
64 3vtx_A MAMA; tetratricopeptide 99.6 2.1E-13 7.4E-18 106.0 20.6 168 65-241 3-170 (184)
65 3ro2_A PINS homolog, G-protein 99.6 9.6E-15 3.3E-19 125.1 14.0 273 3-276 13-332 (338)
66 3ro2_A PINS homolog, G-protein 99.6 7.3E-14 2.5E-18 119.5 19.4 281 69-378 7-332 (338)
67 4abn_A Tetratricopeptide repea 99.6 1.5E-13 5E-18 123.4 21.7 216 46-274 83-319 (474)
68 4abn_A Tetratricopeptide repea 99.6 9.8E-14 3.4E-18 124.5 18.6 217 9-238 82-318 (474)
69 3ulq_A Response regulator aspa 99.6 4.5E-13 1.5E-17 117.1 21.6 301 5-342 22-367 (383)
70 3nf1_A KLC 1, kinesin light ch 99.6 5.1E-14 1.8E-18 119.2 13.9 246 28-275 24-306 (311)
71 3ulq_A Response regulator aspa 99.5 1.2E-12 4E-17 114.5 22.3 307 40-378 21-368 (383)
72 3as5_A MAMA; tetratricopeptide 99.5 2.1E-12 7.2E-17 100.2 19.3 166 31-206 8-173 (186)
73 4gyw_A UDP-N-acetylglucosamine 99.5 1.4E-12 4.7E-17 121.8 19.4 166 30-205 8-173 (723)
74 3nf1_A KLC 1, kinesin light ch 99.5 6.5E-13 2.2E-17 112.4 15.8 240 137-377 22-306 (311)
75 4e6h_A MRNA 3'-END-processing 99.5 9E-10 3.1E-14 101.8 37.0 362 7-379 78-571 (679)
76 3q15_A PSP28, response regulat 99.5 2.3E-11 7.9E-16 106.1 25.3 319 27-377 6-364 (378)
77 3as5_A MAMA; tetratricopeptide 99.5 7E-12 2.4E-16 97.2 19.4 164 102-275 9-172 (186)
78 4gyw_A UDP-N-acetylglucosamine 99.5 3.7E-12 1.3E-16 118.9 19.4 167 65-240 7-173 (723)
79 1hz4_A MALT regulatory protein 99.5 1.5E-11 5.2E-16 107.0 22.2 269 4-275 23-321 (373)
80 1hz4_A MALT regulatory protein 99.5 9.8E-11 3.4E-15 101.9 26.9 281 33-342 16-321 (373)
81 3q15_A PSP28, response regulat 99.4 2.2E-11 7.7E-16 106.1 22.2 301 6-342 23-364 (378)
82 4e6h_A MRNA 3'-END-processing 99.4 1.2E-09 4E-14 101.0 34.2 357 12-380 49-535 (679)
83 4i17_A Hypothetical protein; T 99.4 5.5E-11 1.9E-15 95.7 21.2 196 29-242 5-210 (228)
84 3edt_B KLC 2, kinesin light ch 99.4 4.3E-12 1.5E-16 105.7 15.0 233 8-241 14-281 (283)
85 4i17_A Hypothetical protein; T 99.4 7.4E-11 2.5E-15 95.0 20.7 204 65-288 5-219 (228)
86 3edt_B KLC 2, kinesin light ch 99.4 1.4E-11 4.9E-16 102.5 16.9 232 42-275 12-280 (283)
87 4ga2_A E3 SUMO-protein ligase 99.3 1.3E-11 4.6E-16 92.0 11.7 146 1-157 3-149 (150)
88 3qky_A Outer membrane assembly 99.3 2.3E-10 8E-15 94.1 18.1 189 28-241 12-224 (261)
89 3qky_A Outer membrane assembly 99.3 4.4E-10 1.5E-14 92.5 19.6 195 64-283 12-229 (261)
90 2fo7_A Synthetic consensus TPR 99.3 3.3E-10 1.1E-14 82.5 16.4 127 71-205 5-131 (136)
91 3urz_A Uncharacterized protein 99.3 2.4E-10 8.3E-15 90.4 16.2 162 33-206 6-186 (208)
92 2fo7_A Synthetic consensus TPR 99.3 2.8E-10 9.7E-15 82.9 15.4 132 32-172 2-133 (136)
93 3mv2_B Coatomer subunit epsilo 99.3 5.6E-09 1.9E-13 85.9 24.1 145 86-239 85-238 (310)
94 3mv2_B Coatomer subunit epsilo 99.2 8E-09 2.7E-13 85.0 23.7 175 161-343 85-282 (310)
95 3urz_A Uncharacterized protein 99.2 5.9E-10 2E-14 88.2 16.6 187 67-284 4-192 (208)
96 2pzi_A Probable serine/threoni 99.2 1.8E-10 6.3E-15 107.9 15.8 153 42-205 402-562 (681)
97 3dra_A Protein farnesyltransfe 99.2 1.3E-08 4.3E-13 84.6 24.8 224 41-275 43-286 (306)
98 4ga2_A E3 SUMO-protein ligase 99.2 6.2E-11 2.1E-15 88.4 10.0 146 37-192 3-149 (150)
99 2uy1_A Cleavage stimulation fa 99.2 4.9E-08 1.7E-12 87.5 29.5 342 9-377 28-412 (493)
100 2r5s_A Uncharacterized protein 99.2 2.9E-10 9.9E-15 87.4 13.1 159 72-239 11-171 (176)
101 2r5s_A Uncharacterized protein 99.2 1.1E-09 3.6E-14 84.2 16.3 163 33-205 8-172 (176)
102 2yhc_A BAMD, UPF0169 lipoprote 99.2 2.2E-09 7.6E-14 86.0 18.8 189 30-243 3-215 (225)
103 3qou_A Protein YBBN; thioredox 99.2 2.3E-09 8E-14 89.3 19.5 167 65-239 115-282 (287)
104 1qqe_A Vesicular transport pro 99.2 6.6E-10 2.2E-14 93.0 16.1 171 33-206 39-228 (292)
105 3qou_A Protein YBBN; thioredox 99.2 1.1E-09 3.6E-14 91.4 17.3 169 28-205 114-283 (287)
106 1qqe_A Vesicular transport pro 99.2 3E-09 1E-13 89.0 19.7 210 46-275 32-268 (292)
107 2pzi_A Probable serine/threoni 99.2 5.8E-10 2E-14 104.6 16.9 185 78-274 402-603 (681)
108 2vsy_A XCC0866; transferase, g 99.2 1.2E-09 4.2E-14 100.5 17.2 164 8-183 2-168 (568)
109 2vsy_A XCC0866; transferase, g 99.2 9.9E-10 3.4E-14 101.2 16.4 154 44-207 2-158 (568)
110 2yhc_A BAMD, UPF0169 lipoprote 99.1 7.6E-09 2.6E-13 82.9 19.0 188 66-277 3-214 (225)
111 3dra_A Protein farnesyltransfe 99.1 1.9E-08 6.7E-13 83.5 20.1 220 9-241 47-287 (306)
112 3rjv_A Putative SEL1 repeat pr 99.1 1.9E-08 6.3E-13 79.7 19.4 163 66-242 17-198 (212)
113 3rjv_A Putative SEL1 repeat pr 99.1 2.1E-08 7E-13 79.5 18.5 178 12-208 3-199 (212)
114 2ifu_A Gamma-SNAP; membrane fu 99.0 9E-09 3.1E-13 86.7 15.8 120 7-127 3-141 (307)
115 1hh8_A P67PHOX, NCF-2, neutrop 99.0 2.7E-08 9.1E-13 78.9 17.4 137 33-174 8-153 (213)
116 3q7a_A Farnesyltransferase alp 99.0 3.2E-07 1.1E-11 77.1 24.0 233 33-276 56-331 (349)
117 4gco_A Protein STI-1; structur 98.9 2.5E-08 8.7E-13 71.5 13.3 94 33-128 15-108 (126)
118 2ifu_A Gamma-SNAP; membrane fu 98.9 1.4E-08 4.9E-13 85.5 13.9 193 44-239 4-222 (307)
119 3u3w_A Transcriptional activat 98.9 8E-08 2.7E-12 80.3 18.4 166 104-274 78-264 (293)
120 1p5q_A FKBP52, FK506-binding p 98.9 5.1E-10 1.7E-14 95.5 4.9 175 8-196 78-283 (336)
121 1a17_A Serine/threonine protei 98.9 4.1E-08 1.4E-12 74.2 15.0 127 69-203 15-143 (166)
122 2uy1_A Cleavage stimulation fa 98.9 1.4E-06 4.8E-11 78.1 26.7 312 45-375 28-380 (493)
123 3u3w_A Transcriptional activat 98.9 4.6E-08 1.6E-12 81.8 15.9 171 35-205 79-265 (293)
124 2qfc_A PLCR protein; TPR, HTH, 98.9 5E-08 1.7E-12 81.6 16.1 173 33-205 77-265 (293)
125 3q7a_A Farnesyltransferase alp 98.9 2.5E-07 8.5E-12 77.7 19.9 224 6-241 65-331 (349)
126 2c2l_A CHIP, carboxy terminus 98.9 1.2E-08 4E-13 84.8 11.6 194 66-275 3-198 (281)
127 2lni_A Stress-induced-phosphop 98.9 4.3E-08 1.5E-12 70.9 13.4 96 31-128 16-111 (133)
128 1a17_A Serine/threonine protei 98.9 5.5E-08 1.9E-12 73.5 14.5 131 31-170 13-145 (166)
129 4gco_A Protein STI-1; structur 98.9 3.8E-08 1.3E-12 70.6 12.7 105 2-110 20-124 (126)
130 4f3v_A ESX-1 secretion system 98.9 4.1E-08 1.4E-12 79.7 14.2 189 43-242 18-238 (282)
131 1na0_A Designed protein CTPR3; 98.9 7.4E-08 2.5E-12 68.7 14.1 95 69-170 11-105 (125)
132 2vyi_A SGTA protein; chaperone 98.9 4.5E-08 1.5E-12 70.5 12.9 115 69-191 14-128 (131)
133 2lni_A Stress-induced-phosphop 98.9 6.1E-08 2.1E-12 70.1 13.6 109 3-115 24-132 (133)
134 2e2e_A Formate-dependent nitri 98.9 3.1E-08 1E-12 76.0 12.3 84 43-128 22-108 (177)
135 1p5q_A FKBP52, FK506-binding p 98.9 5.3E-09 1.8E-13 89.2 8.5 149 8-169 126-292 (336)
136 1hh8_A P67PHOX, NCF-2, neutrop 98.9 4.3E-07 1.5E-11 71.8 19.0 129 103-242 8-151 (213)
137 3gw4_A Uncharacterized protein 98.9 3.9E-08 1.3E-12 77.2 12.4 160 42-205 3-175 (203)
138 2c2l_A CHIP, carboxy terminus 98.8 9.3E-09 3.2E-13 85.4 9.1 196 29-241 2-199 (281)
139 3gyz_A Chaperone protein IPGC; 98.8 6.3E-08 2.2E-12 71.7 12.6 101 139-241 33-133 (151)
140 1na0_A Designed protein CTPR3; 98.8 8.6E-08 2.9E-12 68.4 13.2 115 31-154 9-123 (125)
141 2vyi_A SGTA protein; chaperone 98.8 5.7E-08 2E-12 70.0 12.3 122 28-158 9-130 (131)
142 4f3v_A ESX-1 secretion system 98.8 3.3E-07 1.1E-11 74.4 17.5 194 7-215 18-244 (282)
143 2qfc_A PLCR protein; TPR, HTH, 98.8 1.1E-06 3.8E-11 73.3 21.3 170 68-238 76-263 (293)
144 3gyz_A Chaperone protein IPGC; 98.8 1.8E-08 6.3E-13 74.6 9.2 99 30-130 35-133 (151)
145 2vgx_A Chaperone SYCD; alterna 98.8 2.6E-08 8.9E-13 73.8 9.9 57 70-126 24-80 (148)
146 3gw4_A Uncharacterized protein 98.8 5.2E-08 1.8E-12 76.4 12.2 162 6-170 3-175 (203)
147 2e2e_A Formate-dependent nitri 98.8 2.9E-08 9.8E-13 76.2 10.2 118 8-129 23-143 (177)
148 2vgx_A Chaperone SYCD; alterna 98.8 6.2E-08 2.1E-12 71.7 11.4 100 29-130 19-118 (148)
149 2fbn_A 70 kDa peptidylprolyl i 98.7 1.5E-08 5.1E-13 79.4 6.7 144 41-194 14-173 (198)
150 3upv_A Heat shock protein STI1 98.7 2.3E-07 8E-12 66.5 12.6 94 33-128 6-99 (126)
151 3upv_A Heat shock protein STI1 98.7 2.4E-07 8E-12 66.5 12.6 105 3-111 12-122 (126)
152 1elw_A TPR1-domain of HOP; HOP 98.7 5.3E-07 1.8E-11 63.4 14.0 91 34-126 7-97 (118)
153 2fbn_A 70 kDa peptidylprolyl i 98.7 3.8E-08 1.3E-12 77.0 8.6 156 7-171 16-186 (198)
154 2xcb_A PCRH, regulatory protei 98.7 9.2E-08 3.1E-12 70.3 9.8 97 31-129 18-114 (142)
155 3dss_A Geranylgeranyl transfer 98.7 3.7E-05 1.3E-09 64.3 25.8 170 42-222 40-237 (331)
156 1elw_A TPR1-domain of HOP; HOP 98.7 7E-07 2.4E-11 62.8 13.6 104 3-110 12-115 (118)
157 2xcb_A PCRH, regulatory protei 98.7 3.6E-07 1.2E-11 67.1 12.2 98 3-104 26-123 (142)
158 3dss_A Geranylgeranyl transfer 98.7 1.2E-05 4.2E-10 67.2 22.1 218 9-241 43-304 (331)
159 4gcn_A Protein STI-1; structur 98.6 2.4E-07 8.2E-12 66.5 10.1 105 67-171 8-112 (127)
160 2dba_A Smooth muscle cell asso 98.6 1.3E-06 4.3E-11 64.4 14.2 99 28-129 25-127 (148)
161 3sz7_A HSC70 cochaperone (SGT) 98.6 4.9E-07 1.7E-11 68.2 11.8 101 28-130 8-108 (164)
162 3q49_B STIP1 homology and U bo 98.6 6.3E-07 2.2E-11 65.2 12.0 101 28-130 6-106 (137)
163 1wao_1 Serine/threonine protei 98.6 6.9E-07 2.4E-11 79.9 14.4 121 1-125 12-134 (477)
164 3sz7_A HSC70 cochaperone (SGT) 98.6 6E-07 2E-11 67.7 11.9 102 65-173 9-110 (164)
165 2kck_A TPR repeat; tetratricop 98.6 3.4E-07 1.2E-11 63.8 9.8 97 31-129 6-105 (112)
166 2kck_A TPR repeat; tetratricop 98.6 5.6E-07 1.9E-11 62.6 10.4 93 3-99 14-109 (112)
167 2dba_A Smooth muscle cell asso 98.6 1.9E-06 6.4E-11 63.5 13.5 100 65-171 26-128 (148)
168 1elr_A TPR2A-domain of HOP; HO 98.6 8.5E-07 2.9E-11 63.7 11.1 113 67-185 4-120 (131)
169 3q49_B STIP1 homology and U bo 98.6 1.6E-06 5.5E-11 63.0 12.5 99 65-170 7-105 (137)
170 4gcn_A Protein STI-1; structur 98.5 3.4E-06 1.2E-10 60.4 13.5 99 142-241 8-112 (127)
171 4b4t_Q 26S proteasome regulato 98.5 1.1E-05 3.7E-10 71.4 19.3 171 103-275 57-244 (434)
172 1hxi_A PEX5, peroxisome target 98.5 1E-06 3.5E-11 62.5 10.1 96 33-130 19-114 (121)
173 1elr_A TPR2A-domain of HOP; HO 98.5 2.5E-06 8.5E-11 61.1 12.4 110 142-254 4-119 (131)
174 4b4t_Q 26S proteasome regulato 98.5 5E-06 1.7E-10 73.6 16.8 202 38-240 11-244 (434)
175 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.6E-07 5.5E-12 83.6 7.1 151 9-168 248-412 (457)
176 1hxi_A PEX5, peroxisome target 98.5 1E-06 3.4E-11 62.6 9.8 95 70-171 20-114 (121)
177 2xev_A YBGF; tetratricopeptide 98.4 3.2E-06 1.1E-10 60.6 11.7 94 34-129 5-104 (129)
178 2xev_A YBGF; tetratricopeptide 98.4 8.9E-06 3E-10 58.2 13.7 93 72-171 7-105 (129)
179 2if4_A ATFKBP42; FKBP-like, al 98.4 1.8E-06 6.1E-11 73.6 10.4 96 31-129 179-292 (338)
180 3k9i_A BH0479 protein; putativ 98.4 7.8E-07 2.7E-11 62.7 6.8 89 8-99 3-93 (117)
181 1wao_1 Serine/threonine protei 98.4 8.8E-07 3E-11 79.2 8.5 88 39-128 14-101 (477)
182 3k9i_A BH0479 protein; putativ 98.4 7.9E-07 2.7E-11 62.7 6.6 108 43-155 2-110 (117)
183 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 3.9E-06 1.3E-10 74.7 12.5 157 46-232 249-405 (457)
184 1ihg_A Cyclophilin 40; ppiase 98.4 5.2E-06 1.8E-10 71.5 12.5 137 69-232 225-361 (370)
185 3ro3_A PINS homolog, G-protein 98.3 2.7E-06 9.2E-11 63.6 9.4 98 31-128 9-116 (164)
186 1dce_A Protein (RAB geranylger 98.3 4.9E-05 1.7E-09 69.3 19.1 173 44-227 42-241 (567)
187 3ro3_A PINS homolog, G-protein 98.3 6.6E-06 2.3E-10 61.4 11.4 137 67-204 9-156 (164)
188 1ihg_A Cyclophilin 40; ppiase 98.3 4.5E-06 1.5E-10 72.0 11.6 124 31-163 223-362 (370)
189 3rkv_A Putative peptidylprolyl 98.3 5E-06 1.7E-10 62.4 10.4 100 31-130 11-126 (162)
190 3rkv_A Putative peptidylprolyl 98.3 5.8E-06 2E-10 62.1 10.6 117 66-206 10-126 (162)
191 1dce_A Protein (RAB geranylger 98.2 0.0001 3.5E-09 67.2 19.1 175 81-265 43-244 (567)
192 2l6j_A TPR repeat-containing p 98.2 3E-06 1E-10 58.9 6.5 97 29-127 2-104 (111)
193 2hr2_A Hypothetical protein; a 98.2 1.7E-05 5.9E-10 58.1 10.0 99 32-130 12-131 (159)
194 2if4_A ATFKBP42; FKBP-like, al 98.1 5.3E-06 1.8E-10 70.6 8.0 149 67-241 179-328 (338)
195 3n71_A Histone lysine methyltr 98.1 7E-05 2.4E-09 66.7 14.7 63 143-205 394-463 (490)
196 2kat_A Uncharacterized protein 98.1 2.4E-05 8.3E-10 54.7 9.2 77 50-128 4-80 (115)
197 2hr2_A Hypothetical protein; a 98.1 5.6E-05 1.9E-09 55.4 11.2 104 67-170 11-130 (159)
198 1na3_A Designed protein CTPR2; 98.1 4.2E-05 1.4E-09 50.6 9.8 84 30-115 8-91 (91)
199 2kat_A Uncharacterized protein 98.0 2.2E-05 7.6E-10 54.9 8.2 96 12-111 2-99 (115)
200 2l6j_A TPR repeat-containing p 98.0 3.3E-05 1.1E-09 53.4 8.1 95 65-166 2-102 (111)
201 3n71_A Histone lysine methyltr 98.0 0.00011 3.9E-09 65.3 13.3 101 141-241 350-464 (490)
202 1na3_A Designed protein CTPR2; 97.9 9.7E-05 3.3E-09 48.8 9.1 82 66-154 8-89 (91)
203 1klx_A Cysteine rich protein B 97.9 0.00061 2.1E-08 49.3 13.7 111 156-277 9-127 (138)
204 3ma5_A Tetratricopeptide repea 97.9 6.9E-05 2.4E-09 50.8 7.9 62 66-127 6-67 (100)
205 3ma5_A Tetratricopeptide repea 97.8 6.6E-05 2.3E-09 50.9 7.5 82 28-111 4-87 (100)
206 1klx_A Cysteine rich protein B 97.8 0.00045 1.5E-08 50.0 12.0 49 155-206 74-126 (138)
207 3ly7_A Transcriptional activat 97.8 0.0037 1.3E-07 52.6 18.0 143 64-215 191-346 (372)
208 1zu2_A Mitochondrial import re 97.7 7.8E-05 2.7E-09 54.5 6.8 88 78-172 13-121 (158)
209 1zu2_A Mitochondrial import re 97.7 9.3E-05 3.2E-09 54.1 6.7 98 43-150 14-132 (158)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00064 2.2E-08 45.6 8.1 83 37-129 6-89 (99)
211 3qww_A SET and MYND domain-con 97.3 0.00075 2.6E-08 59.1 8.7 85 45-129 312-410 (433)
212 3ly7_A Transcriptional activat 97.2 0.014 4.7E-07 49.3 14.8 143 139-286 191-347 (372)
213 3qww_A SET and MYND domain-con 97.1 0.0033 1.1E-07 55.0 10.8 65 141-205 339-410 (433)
214 3mkq_A Coatomer beta'-subunit; 97.0 0.027 9.1E-07 54.1 17.1 128 40-206 608-736 (814)
215 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0054 1.8E-07 41.6 8.9 79 29-107 3-86 (104)
216 3bee_A Putative YFRE protein; 97.0 0.011 3.9E-07 38.9 10.1 68 139-207 3-73 (93)
217 3bee_A Putative YFRE protein; 97.0 0.011 3.8E-07 39.0 9.9 70 28-99 3-75 (93)
218 3qwp_A SET and MYND domain-con 96.9 0.0072 2.5E-07 52.9 11.1 99 107-205 293-399 (429)
219 3mkq_B Coatomer subunit alpha; 96.9 0.031 1.1E-06 41.5 12.7 130 38-203 12-141 (177)
220 2kc7_A BFR218_protein; tetratr 96.9 0.008 2.7E-07 40.1 8.9 58 73-130 6-64 (99)
221 3u64_A Protein TP_0956; tetrat 96.9 0.076 2.6E-06 43.0 15.4 91 194-286 180-281 (301)
222 1wy6_A Hypothetical protein ST 96.9 0.027 9.4E-07 39.2 10.8 140 223-381 18-157 (172)
223 3qwp_A SET and MYND domain-con 96.8 0.0058 2E-07 53.5 9.6 97 74-170 294-399 (429)
224 3mkq_B Coatomer subunit alpha; 96.8 0.091 3.1E-06 39.0 13.9 99 76-200 14-112 (177)
225 1pc2_A Mitochondria fission pr 96.7 0.022 7.5E-07 41.2 9.9 85 297-385 16-105 (152)
226 3mkq_A Coatomer beta'-subunit; 96.7 0.065 2.2E-06 51.4 16.5 157 75-275 607-764 (814)
227 3u64_A Protein TP_0956; tetrat 96.7 0.2 6.8E-06 40.6 18.6 113 140-252 152-282 (301)
228 1pc2_A Mitochondria fission pr 96.5 0.028 9.4E-07 40.7 9.5 81 85-171 16-100 (152)
229 4h7y_A Dual specificity protei 96.5 0.054 1.8E-06 38.7 10.4 103 176-280 12-127 (161)
230 2v5f_A Prolyl 4-hydroxylase su 96.4 0.023 8E-07 38.3 8.6 74 101-174 5-78 (104)
231 1wy6_A Hypothetical protein ST 96.4 0.15 5E-06 35.7 12.2 146 34-208 8-156 (172)
232 4b4t_P 26S proteasome regulato 96.1 0.66 2.3E-05 40.8 20.2 266 8-274 29-322 (445)
233 4h7y_A Dual specificity protei 95.8 0.23 7.9E-06 35.5 10.9 114 139-255 10-136 (161)
234 3lvg_A Clathrin heavy chain 1; 95.5 0.0012 4E-08 57.2 -1.9 316 30-368 82-429 (624)
235 1nzn_A CGI-135 protein, fissio 95.4 0.29 9.8E-06 34.0 10.2 83 83-171 17-103 (126)
236 4ady_A RPN2, 26S proteasome re 95.2 2.3 7.9E-05 40.9 20.9 229 39-276 382-623 (963)
237 2ff4_A Probable regulatory pro 94.8 0.3 1E-05 42.1 11.2 78 316-394 173-255 (388)
238 1nzn_A CGI-135 protein, fissio 94.7 0.47 1.6E-05 32.9 9.7 84 298-385 20-108 (126)
239 4gns_B Protein CSD3, chitin bi 94.3 0.53 1.8E-05 44.1 12.0 129 145-274 251-398 (754)
240 2ff4_A Probable regulatory pro 94.0 0.32 1.1E-05 41.9 9.4 200 30-251 32-249 (388)
241 4gns_B Protein CSD3, chitin bi 93.4 0.77 2.6E-05 43.0 11.4 133 70-203 251-397 (754)
242 4b4t_P 26S proteasome regulato 93.2 4.1 0.00014 35.7 22.3 196 45-240 30-246 (445)
243 1v54_E Cytochrome C oxidase po 93.1 0.69 2.4E-05 30.4 7.4 44 196-239 29-72 (109)
244 4fhn_B Nucleoporin NUP120; pro 92.8 3 0.0001 41.7 15.4 139 7-159 824-988 (1139)
245 3o48_A Mitochondria fission 1 92.8 1.7 6E-05 30.3 10.1 77 309-387 35-114 (134)
246 4fhn_B Nucleoporin NUP120; pro 92.6 9.2 0.00032 38.3 19.9 150 72-227 817-986 (1139)
247 4ady_A RPN2, 26S proteasome re 92.1 9 0.00031 37.0 23.9 312 34-360 342-672 (963)
248 2p58_C Putative type III secre 91.9 1.5 5.2E-05 28.6 7.8 86 9-105 21-107 (116)
249 3lvg_A Clathrin heavy chain 1; 90.8 0.00051 1.8E-08 59.3 -11.6 216 30-273 53-288 (624)
250 2uwj_G Type III export protein 90.7 1.4 4.8E-05 28.7 6.7 86 9-105 20-106 (115)
251 1y8m_A FIS1; mitochondria, unk 89.6 4.2 0.00014 28.8 12.3 74 310-385 35-111 (144)
252 1v54_E Cytochrome C oxidase po 89.5 3.2 0.00011 27.3 9.9 64 157-221 25-88 (109)
253 1wdy_A 2-5A-dependent ribonucl 89.4 2.5 8.6E-05 34.0 9.6 246 107-384 8-281 (285)
254 1zbp_A Hypothetical protein VP 88.0 1.8 6.2E-05 34.5 7.1 48 79-126 9-56 (273)
255 3ffl_A Anaphase-promoting comp 87.9 5.3 0.00018 29.2 9.0 99 32-130 21-151 (167)
256 3o48_A Mitochondria fission 1 87.7 5.5 0.00019 27.8 9.2 76 26-102 35-113 (134)
257 4b4t_R RPN7, 26S proteasome re 87.2 14 0.00049 32.1 13.4 98 144-241 133-237 (429)
258 2y69_E Cytochrome C oxidase su 86.7 6.4 0.00022 27.5 9.9 45 162-206 73-117 (152)
259 2y69_E Cytochrome C oxidase su 85.8 7.2 0.00024 27.3 9.5 64 46-110 68-131 (152)
260 4b4t_R RPN7, 26S proteasome re 85.2 10 0.00034 33.1 11.2 98 178-275 132-236 (429)
261 1zbp_A Hypothetical protein VP 84.9 13 0.00046 29.6 14.1 71 38-110 4-77 (273)
262 3ffl_A Anaphase-promoting comp 83.2 11 0.00039 27.5 9.4 120 144-276 22-151 (167)
263 4a1g_A Mitotic checkpoint seri 81.0 11 0.00038 27.1 8.0 53 332-384 83-136 (152)
264 1wdy_A 2-5A-dependent ribonucl 80.2 8.5 0.00029 30.8 8.5 19 37-55 8-26 (285)
265 1y8m_A FIS1; mitochondria, unk 79.3 14 0.00049 26.1 11.2 74 28-102 36-112 (144)
266 3txn_A 26S proteasome regulato 78.6 31 0.0011 29.6 26.2 296 32-344 20-344 (394)
267 3lpz_A GET4 (YOR164C homolog); 78.5 28 0.00095 29.0 18.1 111 145-270 38-159 (336)
268 3utm_A Tankyrase-1; tankyrase, 77.9 28 0.00097 28.7 13.3 77 299-384 227-308 (351)
269 3esl_A Checkpoint serine/threo 77.3 21 0.00073 27.0 9.1 53 295-347 95-148 (202)
270 1k1a_A B-cell lymphoma 3-encod 75.8 19 0.00064 27.9 9.1 26 149-174 13-38 (241)
271 2wvi_A Mitotic checkpoint seri 75.4 21 0.00072 26.0 8.5 52 297-348 78-130 (164)
272 2wpv_A GET4, UPF0363 protein Y 74.6 35 0.0012 28.1 22.2 112 145-271 36-158 (312)
273 4b4t_S RPN3, 26S proteasome re 73.1 23 0.0008 31.5 9.4 66 31-96 231-299 (523)
274 4aez_C MAD3, mitotic spindle c 72.0 18 0.00061 28.0 7.4 52 296-347 131-183 (223)
275 1k1a_A B-cell lymphoma 3-encod 70.8 23 0.0008 27.3 8.5 183 184-384 13-211 (241)
276 1qsa_A Protein (soluble lytic 68.9 72 0.0025 29.4 26.3 115 157-275 229-347 (618)
277 1bpo_A Protein (clathrin); cla 68.6 26 0.00091 30.5 8.4 113 9-127 343-455 (494)
278 2d2s_A Exocyst complex compone 68.6 38 0.0013 26.5 8.9 88 184-274 25-118 (235)
279 2ion_A PDCD4, programmed cell 67.6 32 0.0011 24.8 7.9 65 145-210 12-78 (152)
280 3bu8_A Telomeric repeat-bindin 65.5 21 0.00072 27.2 6.4 22 75-96 122-143 (235)
281 4aez_C MAD3, mitotic spindle c 65.4 24 0.00084 27.2 7.0 57 330-386 130-187 (223)
282 3jxi_A Vanilloid receptor-rela 64.5 12 0.00039 29.7 5.5 55 149-203 9-72 (260)
283 3eu9_A Huntingtin-interacting 64.4 11 0.00037 29.2 5.3 204 150-378 14-236 (240)
284 1qsa_A Protein (soluble lytic 64.4 88 0.003 28.8 29.7 112 262-377 229-347 (618)
285 3eiq_C Programmed cell death p 62.9 69 0.0024 27.0 11.9 68 316-384 219-288 (358)
286 2nsz_A Programmed cell death p 61.9 37 0.0013 23.5 9.3 65 145-210 10-76 (129)
287 3eu9_A Huntingtin-interacting 60.4 21 0.00072 27.4 6.4 16 40-55 15-30 (240)
288 3esl_A Checkpoint serine/threo 60.2 54 0.0018 24.9 12.5 48 83-130 95-144 (202)
289 4gq2_M Nucleoporin NUP120; bet 59.5 87 0.003 30.7 11.4 82 7-95 822-925 (950)
290 3qil_A Clathrin heavy chain 1; 58.8 3.7 0.00013 27.9 1.3 74 2-89 13-86 (125)
291 3hra_A Ankyrin repeat family p 58.0 22 0.00075 26.5 5.9 14 334-347 158-171 (201)
292 3txn_A 26S proteasome regulato 57.5 91 0.0031 26.7 25.6 169 103-274 21-208 (394)
293 3ljn_A Hypothetical protein; a 57.5 13 0.00044 31.3 4.8 93 146-247 21-116 (364)
294 4b4t_S RPN3, 26S proteasome re 57.4 1.1E+02 0.0036 27.4 12.2 64 67-130 231-299 (523)
295 3hra_A Ankyrin repeat family p 56.9 23 0.0008 26.3 5.9 14 42-55 13-26 (201)
296 2zu6_B Programmed cell death p 55.8 84 0.0029 25.8 11.8 26 145-170 6-31 (307)
297 3kea_A K1L; tropism, ANK repea 54.2 40 0.0014 27.1 7.1 235 7-272 8-243 (285)
298 2b7e_A PRE-mRNA processing pro 53.8 11 0.00038 21.9 2.5 29 159-187 3-31 (59)
299 4ets_A Ferric uptake regulatio 53.3 29 0.00098 25.3 5.5 47 70-116 35-84 (162)
300 2wpv_A GET4, UPF0363 protein Y 53.3 94 0.0032 25.6 21.9 112 104-236 36-158 (312)
301 3bu8_A Telomeric repeat-bindin 52.3 77 0.0026 24.3 7.7 48 83-130 88-143 (235)
302 2keb_A DNA polymerase subunit 51.9 46 0.0016 21.6 5.9 30 299-328 29-58 (101)
303 3kae_A CDC27, possible protein 50.4 73 0.0025 23.5 6.8 56 323-378 71-143 (242)
304 2d2s_A Exocyst complex compone 48.7 87 0.003 24.5 7.8 29 176-204 90-118 (235)
305 2xig_A Ferric uptake regulatio 48.5 71 0.0024 22.8 8.2 43 220-262 34-76 (150)
306 2fe3_A Peroxide operon regulat 48.5 69 0.0024 22.6 7.5 36 226-261 35-70 (145)
307 3t8k_A Uncharacterized protein 47.9 82 0.0028 23.3 10.0 23 224-246 47-69 (186)
308 2etb_A Transient receptor pote 47.6 15 0.00052 28.9 3.5 57 148-205 5-71 (256)
309 3eyy_A Putative iron uptake re 46.6 75 0.0026 22.5 6.9 59 304-364 9-67 (145)
310 3ltm_A Alpha-REP4; protein eng 46.5 90 0.0031 23.4 21.2 106 143-260 96-201 (211)
311 2fe3_A Peroxide operon regulat 46.4 75 0.0026 22.4 8.2 60 304-364 12-71 (145)
312 2ijq_A Hypothetical protein; s 45.7 84 0.0029 22.8 7.5 61 317-378 36-104 (161)
313 3jxi_A Vanilloid receptor-rela 45.6 17 0.00056 28.7 3.5 184 184-378 9-251 (260)
314 1mzb_A Ferric uptake regulatio 45.5 74 0.0025 22.1 6.7 36 227-262 33-68 (136)
315 3eyy_A Putative iron uptake re 45.3 74 0.0025 22.5 6.5 34 228-261 33-66 (145)
316 2zu6_B Programmed cell death p 44.5 1.3E+02 0.0045 24.7 12.2 68 317-385 169-238 (307)
317 2r9g_A AAA ATPase, central reg 44.3 1E+02 0.0035 23.3 9.9 54 190-244 27-85 (204)
318 3l6a_A Eukaryotic translation 44.0 1.5E+02 0.005 25.1 9.8 76 144-220 14-91 (364)
319 3kea_A K1L; tropism, ANK repea 43.5 1E+02 0.0035 24.6 8.0 111 149-272 35-151 (285)
320 3bqo_A Telomeric repeat-bindin 43.1 29 0.00099 26.1 3.9 21 75-95 125-145 (211)
321 1mzb_A Ferric uptake regulatio 43.1 81 0.0028 21.9 7.6 35 329-363 33-67 (136)
322 2xig_A Ferric uptake regulatio 42.7 89 0.003 22.2 8.9 60 304-364 17-76 (150)
323 3t8k_A Uncharacterized protein 42.4 1E+02 0.0034 22.8 9.4 65 147-211 40-108 (186)
324 2w57_A Ferric uptake regulatio 42.0 91 0.0031 22.2 7.6 35 329-363 32-66 (150)
325 2w57_A Ferric uptake regulatio 41.5 85 0.0029 22.3 6.3 60 203-263 8-68 (150)
326 1oyz_A Hypothetical protein YI 41.0 1.3E+02 0.0045 23.7 21.3 49 29-82 35-83 (280)
327 3twr_A Tankyrase-2; ankyrin re 40.9 57 0.0019 23.2 5.6 13 223-235 16-28 (165)
328 1n11_A Ankyrin; clathrin, BAND 39.5 1.8E+02 0.0062 24.9 10.6 86 37-126 50-135 (437)
329 1bpo_A Protein (clathrin); cla 39.5 2E+02 0.0068 25.3 11.0 82 81-172 343-425 (494)
330 3lpz_A GET4 (YOR164C homolog); 39.1 1.7E+02 0.0058 24.4 19.0 23 33-55 37-59 (336)
331 2uwj_G Type III export protein 38.7 83 0.0028 20.7 9.6 79 81-172 20-98 (115)
332 4a1g_A Mitotic checkpoint seri 38.0 1.1E+02 0.0038 21.9 12.8 47 84-130 82-130 (152)
333 3kae_A CDC27, possible protein 37.7 1.2E+02 0.0042 22.4 7.1 50 113-174 45-94 (242)
334 3aji_A 26S proteasome non-ATPa 37.6 1.3E+02 0.0044 22.7 7.5 20 148-167 9-28 (231)
335 1wgl_A TOLL-interacting protei 37.4 40 0.0014 19.5 3.2 21 260-280 36-56 (59)
336 2p58_C Putative type III secre 37.4 88 0.003 20.6 10.0 77 82-171 22-98 (116)
337 2fu4_A Ferric uptake regulatio 37.4 71 0.0024 19.6 7.8 60 304-364 7-67 (83)
338 3mwm_A ZUR, putative metal upt 37.1 95 0.0033 21.7 5.9 44 320-363 19-62 (139)
339 3ygs_P Procaspase 9; apoptosis 36.7 70 0.0024 20.7 4.8 31 158-192 53-83 (97)
340 2o03_A Probable zinc uptake re 36.5 1E+02 0.0035 21.2 6.2 43 321-363 17-59 (131)
341 3ljn_A Hypothetical protein; a 35.2 1.5E+02 0.005 24.7 7.9 12 361-372 253-264 (364)
342 2r9g_A AAA ATPase, central reg 35.0 1.5E+02 0.005 22.5 9.5 63 147-210 16-86 (204)
343 3ltj_A Alpharep-4; protein eng 34.7 1.4E+02 0.0047 22.1 20.4 17 211-227 151-167 (201)
344 1krq_A Ferritin; H-chain like 34.6 65 0.0022 23.5 4.9 19 158-176 51-69 (167)
345 3bqo_A Telomeric repeat-bindin 34.5 1.1E+02 0.0036 23.2 5.7 25 147-171 122-146 (211)
346 3bge_A Predicted ATPase; struc 34.3 1.5E+02 0.0051 22.4 8.0 31 156-186 21-51 (201)
347 2pnn_A Transient receptor pote 34.1 1.7E+02 0.0057 23.0 7.8 57 147-203 15-80 (273)
348 2qq8_A TBC1 domain family memb 33.9 1.7E+02 0.0057 24.3 7.8 44 199-242 215-258 (334)
349 4ets_A Ferric uptake regulatio 33.1 1.4E+02 0.0047 21.6 7.9 57 307-364 26-84 (162)
350 3eiq_C Programmed cell death p 32.9 2.2E+02 0.0076 23.9 15.9 59 69-128 56-116 (358)
351 3bge_A Predicted ATPase; struc 32.6 1.6E+02 0.0055 22.2 8.5 45 182-226 9-56 (201)
352 3ctd_A Putative ATPase, AAA fa 32.4 1.7E+02 0.0057 22.4 8.8 62 182-243 37-106 (213)
353 3mwm_A ZUR, putative metal upt 32.4 93 0.0032 21.8 5.2 47 146-192 17-63 (139)
354 2ion_A PDCD4, programmed cell 32.3 1.4E+02 0.0047 21.4 8.7 25 104-128 12-36 (152)
355 3f3f_C Nucleoporin NUP85; stru 32.3 1.5E+02 0.0051 26.8 7.4 69 85-161 499-568 (570)
356 2o03_A Probable zinc uptake re 31.8 1E+02 0.0036 21.2 5.4 46 147-192 15-60 (131)
357 1oai_A Nuclear RNA export fact 31.6 37 0.0013 19.7 2.4 24 44-67 33-56 (59)
358 1oy3_D Transcription factor in 30.8 1.6E+02 0.0054 23.0 7.2 80 300-387 172-256 (282)
359 2cos_A Serine/threonine protei 30.6 76 0.0026 17.9 3.7 37 334-375 10-48 (54)
360 2wvi_A Mitotic checkpoint seri 30.4 1.6E+02 0.0054 21.5 12.8 46 85-130 78-125 (164)
361 3ltm_A Alpha-REP4; protein eng 29.9 1.7E+02 0.0059 21.7 21.1 18 29-46 31-48 (211)
362 2ijq_A Hypothetical protein; s 29.8 1.6E+02 0.0055 21.4 8.4 60 34-95 36-103 (161)
363 4gq2_M Nucleoporin NUP120; bet 29.6 4.1E+02 0.014 26.0 13.6 131 73-226 816-950 (950)
364 1wty_A Hypothetical protein TT 29.5 1.3E+02 0.0045 20.3 6.3 75 263-342 4-80 (119)
365 1eum_A Ferritin 1; ECFTNA, met 29.2 1.6E+02 0.0055 21.2 7.7 106 158-272 51-156 (165)
366 1s3q_A Ferritin; ferroxidase, 28.6 1.7E+02 0.0059 21.3 7.9 108 158-274 53-160 (173)
367 1bd8_A P19INK4D CDK4/6 inhibit 28.5 1.1E+02 0.0038 21.2 5.4 17 110-126 8-24 (156)
368 3qz3_A Ferritin; structural ge 28.4 1.8E+02 0.0062 21.5 7.0 19 158-176 60-78 (184)
369 2rfa_A Transient receptor pote 28.3 1.9E+02 0.0065 21.8 8.3 24 220-243 159-182 (232)
370 3qye_A TBC1 domain family memb 27.7 1.8E+02 0.0063 23.9 7.1 47 198-244 209-255 (331)
371 3ctd_A Putative ATPase, AAA fa 27.3 2.1E+02 0.0071 21.9 8.7 67 145-211 35-109 (213)
372 2f6m_A Suppressor protein STP2 27.1 1E+02 0.0035 18.3 4.6 44 70-113 5-48 (65)
373 2cwy_A Hypothetical protein TT 26.1 1.3E+02 0.0043 19.4 4.5 32 189-220 13-44 (94)
374 2nsz_A Programmed cell death p 25.8 1.6E+02 0.0056 20.2 9.9 64 104-174 10-75 (129)
375 3hzj_A Rabgap1L, RAB GTPase-ac 25.8 2.5E+02 0.0084 22.9 7.5 45 199-243 176-220 (310)
376 2rfa_A Transient receptor pote 25.3 2.2E+02 0.0075 21.4 8.6 17 110-126 9-25 (232)
377 2cih_A Ferritin heavy chain; a 25.3 1.2E+02 0.0041 22.5 5.0 19 158-176 64-82 (183)
378 2crb_A Nuclear receptor bindin 24.8 1.4E+02 0.0049 19.2 4.6 25 351-375 17-41 (97)
379 3pvs_A Replication-associated 24.6 3.5E+02 0.012 23.5 11.8 153 116-275 166-358 (447)
380 3ka8_A Ferritin, middle subuni 24.1 1.7E+02 0.0057 21.5 5.5 18 158-175 60-77 (176)
381 1bd8_A P19INK4D CDK4/6 inhibit 23.7 1.8E+02 0.0062 20.1 5.7 15 42-56 10-24 (156)
382 1ug3_A EIF4GI, eukaryotic prot 23.4 3.2E+02 0.011 22.7 11.8 127 250-377 14-152 (339)
383 4g8k_A 2-5A-dependent ribonucl 23.1 3E+02 0.01 22.3 15.3 21 36-56 27-47 (337)
384 3aji_A 26S proteasome non-ATPa 22.6 2.5E+02 0.0084 21.1 8.7 16 186-201 12-27 (231)
385 1rw2_A ATP-dependent DNA helic 22.3 44 0.0015 24.0 1.9 51 329-382 73-127 (152)
386 3t5v_B Nuclear mRNA export pro 22.1 1.7E+02 0.0059 25.6 6.0 64 143-206 177-249 (455)
387 3b7b_A Euchromatic histone-lys 22.0 83 0.0028 24.0 3.8 14 40-53 17-30 (237)
388 3gvo_A Pumilio 2, pumilio homo 21.8 1.4E+02 0.0047 25.0 5.3 57 35-94 38-97 (351)
389 3qil_A Clathrin heavy chain 1; 21.6 57 0.002 22.3 2.2 17 189-205 44-60 (125)
390 3f3f_C Nucleoporin NUP85; stru 21.3 4.3E+02 0.015 23.9 8.3 54 66-120 515-568 (570)
391 2yru_A Steroid receptor RNA ac 20.5 2.1E+02 0.0071 19.4 5.7 42 164-205 48-89 (118)
392 1q2z_A ATP-dependent DNA helic 20.5 33 0.0011 23.5 0.9 51 329-382 42-96 (120)
393 4g8k_A 2-5A-dependent ribonucl 20.4 2.4E+02 0.0082 22.9 6.6 18 38-55 63-80 (337)
394 1rcd_A L ferritin; iron storag 20.0 79 0.0027 23.2 3.0 19 158-176 60-78 (173)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-34 Score=267.30 Aligned_cols=359 Identities=10% Similarity=-0.006 Sum_probs=231.7
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCC--------------CCCCCHHHH
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP--------------SSIPNHATF 70 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------------~~~~~~~~~ 70 (403)
+...|++++|+.+|+.+.. .++++.+++.++.+|.+.|++++|.++|+++.... +.+++..+|
T Consensus 127 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (597)
T 2xpi_A 127 YCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMC 203 (597)
T ss_dssp HHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHH
Confidence 4445666666666665542 24556666666666666666666666666322211 012345566
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH--------------------------------------HHHHH
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL--------------------------------------VDALC 112 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l--------------------------------------~~~~~ 112 (403)
+.++.+|.+.|++++|+++|+++.+.++.+...+..+ +..|.
T Consensus 204 ~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (597)
T 2xpi_A 204 YLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS 283 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc
Confidence 6666666666666666666666666555444433332 33344
Q ss_pred hcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
+.|++++|.++|+++... +++..+++.++..|.+.|++++|.++|+++.+.++. +..++..++.+|.+.|+
T Consensus 284 ~~g~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 354 (597)
T 2xpi_A 284 HEDELRRAEDYLSSINGL--------EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGE 354 (597)
T ss_dssp THHHHHHHHHHHHTSTTG--------GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTC
T ss_pred CcchHHHHHHHHHHhhcC--------CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCC
Confidence 556666666666665542 578899999999999999999999999999877654 66677777777777777
Q ss_pred hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 193 PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
+++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|++
T Consensus 355 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 432 (597)
T 2xpi_A 355 KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTT 432 (597)
T ss_dssp HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776552 44566777777777777777777777777766532 2466777777777777777777777777
Q ss_pred chhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc----CC
Q 041804 273 MPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL----GC 345 (403)
Q Consensus 273 ~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~ 345 (403)
+.+.+ ..+..+|..+...+ ++.++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 433 ~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 433 AARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 66542 22455555554444 5666777777776665332 5566667777777777777777777766554 44
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 346 SPD--EFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 346 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
.|+ ..+|..++.+|.+.|++++|.++++++.+.+
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 555 5666777777777777777777777666643
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4e-34 Score=266.09 Aligned_cols=362 Identities=10% Similarity=-0.001 Sum_probs=313.5
Q ss_pred ccccccccHHHHHHhhhhhcccC--------------CCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHH
Q 041804 3 TLSCYANDWKRALEFFNWVETDC--------------HFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA 68 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 68 (403)
..+.+.|++++|+++|+.+.... +.+++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~ 235 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYE 235 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhH
Confidence 45677899999999999654322 334568899999999999999999999999999865 22334
Q ss_pred HHHHH--------------------------------------HHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 69 TFRIM--------------------------------------FKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 69 ~~~~l--------------------------------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
++..+ +..|.+.|++++|.++|+++.+. +++..++..++.+
T Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~ 314 (597)
T 2xpi_A 236 AFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADT 314 (597)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHH
T ss_pred HHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHH
Confidence 43333 45566789999999999999887 3599999999999
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
|.+.|++++|..+|+++... .+.+..+++.++.++.+.|++++|.++++++.+.... +..+|+.++..|.+.
T Consensus 315 ~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 386 (597)
T 2xpi_A 315 LFVRSRFIDVLAITTKILEI-------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCV 386 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHHc-------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHh
Confidence 99999999999999998863 3557788999999999999999999999999876544 788999999999999
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 041804 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVL 270 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (403)
|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|.+.|++++|.++|
T Consensus 387 g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 464 (597)
T 2xpi_A 387 NKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYL 464 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998863 44678999999999999999999999999998743 47889999999999999999999999
Q ss_pred HhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHc----CCCCc--hhhHHHHHHHHHhcCCcchHHHHHHHHH
Q 041804 271 AEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIES----GIRPK--MDTYVMLLRKFGRWGFLRPVFVVWKKME 341 (403)
Q Consensus 271 ~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~----~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~ 341 (403)
+++.+.. ..+..+|+.+...+ ++.++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.
T Consensus 465 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 465 QSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 9998763 23677788777665 8899999999999875 66787 7899999999999999999999999998
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 342 ELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 342 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
+.+ +.+..+|..+..+|.+.|++++|.++++++.+..
T Consensus 544 ~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 544 LLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 875 5689999999999999999999999999999853
No 3
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4.6e-33 Score=248.98 Aligned_cols=201 Identities=14% Similarity=0.252 Sum_probs=127.8
Q ss_pred HHHHHHHHhCCCCCcH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC---------HHHH
Q 041804 162 REFWEEMDKRGVVKDL-HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG---------VDFA 231 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a 231 (403)
..+.+++.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHH
Confidence 3444455444443322 24555666666666666666666666666666666666666666655433 4566
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHc
Q 041804 232 MRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIES 308 (403)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~ 308 (403)
.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+| ++.++|.++|++|.+.
T Consensus 90 ~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 6666666666666666666666666666666666666666666666666666666666665 4566666666667777
Q ss_pred CCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhc
Q 041804 309 GIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDK 362 (403)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 362 (403)
|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 777788888888888888888888888888888888888888888887777653
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=6e-33 Score=248.22 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=162.2
Q ss_pred HHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC--------
Q 041804 87 MGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS-------- 156 (403)
Q Consensus 87 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------- 156 (403)
..+.+++.+.+.. +...++.+|++|++.|++++|.++|++|... ++.||..+||.||.+|++.+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~------Gv~pd~~tyn~Li~~c~~~~~~~~~~~~ 83 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN------GVQLSQYHYNVLLYVCSLAEAATESSPN 83 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH------TCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc------CCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence 3334444444433 2234555555555555555555555555554 55556666666665555443
Q ss_pred -ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHH
Q 041804 157 -WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVY 235 (403)
Q Consensus 157 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 235 (403)
.++.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 3688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCC
Q 041804 236 REMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK 294 (403)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 294 (403)
++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|..|+..||+.++..+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999987744
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.3e-29 Score=221.38 Aligned_cols=361 Identities=12% Similarity=0.020 Sum_probs=313.8
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
.+.+.|++++|++.+..+.+. .+.+...+..+...+...|++++|...++...... +.+..+|..+..++.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCCCH
Confidence 356789999999999988752 24456778888899999999999999999988865 46788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHH
Q 041804 84 NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE 163 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 163 (403)
++|+..|+++.+..+.+..+|..+..++...|++++|...++++.. ..+.+..++..+...+...|++++|.+
T Consensus 84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~~ 156 (388)
T 1w3b_A 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ-------YNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH-------HCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999999999888999999999999999999999999998876 335567788889999999999999999
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 164 FWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
.|+++.+..+. +..+|..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...+++..+...
T Consensus 157 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 234 (388)
T 1w3b_A 157 CYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234 (388)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 99999987655 67899999999999999999999999999874 44567888999999999999999999999988743
Q ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC-ChhhHHHHHHh---hCCHHHHHHHHHHHHHcCCCCchhhHHH
Q 041804 244 QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP-DVITYHCFFRC---LEKPREILGLFDRMIESGIRPKMDTYVM 319 (403)
Q Consensus 244 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (403)
.+..++..+...|.+.|++++|...|+++.+. .| +...+..+... .++.++|.+.++++.+.. +.+..++..
T Consensus 235 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 310 (388)
T 1w3b_A 235 -NHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNN 310 (388)
T ss_dssp -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHH
Confidence 36788999999999999999999999999876 34 34455555444 388999999999999874 347789999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
+...+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|...++++.+. .|+.
T Consensus 311 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~ 372 (388)
T 1w3b_A 311 LANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTF 372 (388)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCC
Confidence 9999999999999999999998763 557889999999999999999999999999874 4543
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=1.4e-27 Score=209.94 Aligned_cols=345 Identities=11% Similarity=0.021 Sum_probs=298.1
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
.++...|++++|...++...+ ..+.+..+|..+..++.+.|++++|...|+++.... +.+..+|..+..++...|+
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIK--QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHcCCHHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCC
Confidence 456678999999999998875 235678899999999999999999999999999865 3456789999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCR 162 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 162 (403)
+++|++.|+++.+..+.+...+..+...+...|++++|...|+++.. ..+.+..+|..+...+...|++++|.
T Consensus 117 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~g~~~~A~ 189 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE-------TQPNFAVAWSNLGCVFNAQGEIWLAI 189 (388)
T ss_dssp SSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999888889999999999999999999999999887 34567789999999999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
..|+++.+.++. +...|..+...+...|++++|...|++..... +.+..++..+..++...|++++|...|+.+.+..
T Consensus 190 ~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 190 HHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 999999998766 77889999999999999999999999998873 3457889999999999999999999999999874
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHH
Q 041804 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVM 319 (403)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~ 319 (403)
. .+..++..+...+.+.|++++|...|+++.+.. +.+..++..+...+ ++.++|...++++.+... .+..++..
T Consensus 268 p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~ 344 (388)
T 1w3b_A 268 P-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSN 344 (388)
T ss_dssp S-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHH
T ss_pred C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHH
Confidence 3 257789999999999999999999999998762 33566666655544 789999999999987532 35778999
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
+...+.+.|++++|...++++.+.. +.+...|..+...+.+.|+
T Consensus 345 l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 345 LASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence 9999999999999999999998753 4467788888777766653
No 7
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.95 E-value=2.7e-24 Score=192.83 Aligned_cols=346 Identities=12% Similarity=0.030 Sum_probs=274.5
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFN 91 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 91 (403)
..+...+..+.. ..+.+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|+..|+
T Consensus 9 ~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 84 (450)
T 2y4t_A 9 SGVDLGTENLYF--QSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLT 84 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccccccccccc--ccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444544442 234567889999999999999999999999998864 4678899999999999999999999999
Q ss_pred HHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcch---HHHHHH------------HHHHHhcC
Q 041804 92 KLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT---KIYNMI------------LRGWFKMS 156 (403)
Q Consensus 92 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~ 156 (403)
++.+.++.+..++..+..+|...|++++|...|+++... .+.+. .++..+ ...+...|
T Consensus 85 ~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 85 KVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS-------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999889999999999999999999999999998763 24444 555555 44589999
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 041804 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236 (403)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 236 (403)
++++|...|+++.+..+. +..++..+..+|...|++++|...|+++.+.. +.+..++..+...|...|++++|...|+
T Consensus 158 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 235 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR 235 (450)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987655 78899999999999999999999999998873 4577899999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHH------------HHHHHhcCcHHHHHHHHHhchhcCCCCCh-----hhHHHHHH---hhCCHH
Q 041804 237 EMREMGCQPSVVTCNTV------------IKLLCENGRVREAYAVLAEMPKKGCVPDV-----ITYHCFFR---CLEKPR 296 (403)
Q Consensus 237 ~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~---~~~~~~ 296 (403)
.+.+.... +...+..+ ...+...|++++|...|+++.+. .|+. ..+..+.. ..++.+
T Consensus 236 ~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 236 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 99976432 44445444 78899999999999999999875 3442 23433333 337899
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHH------------HHhcC-
Q 041804 297 EILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDA------------LIDKG- 363 (403)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g- 363 (403)
+|...++.+.+... .+..+|..+..+|...|++++|...++++.+.. +.+...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQMEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 99999999987643 267899999999999999999999999998853 3456677766633 44444
Q ss_pred ----CHHHHHHHHHHH
Q 041804 364 ----MLDMARKYDEEM 375 (403)
Q Consensus 364 ----~~~~a~~~~~~m 375 (403)
+.+++.+.++++
T Consensus 391 ~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKL 406 (450)
T ss_dssp STTCCTTHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHH
Confidence 556778888763
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.2e-24 Score=198.39 Aligned_cols=371 Identities=11% Similarity=-0.032 Sum_probs=301.8
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.+... .|++.++..+..++.+.|++++|...++++.+.. +.+..+|..+..++...|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhh
Confidence 4566789999999999999863 3789999999999999999999999999999875 4567899999999999999
Q ss_pred hHHHHHHHHHHhhcCCCc--------------------------------------------------------------
Q 041804 83 VNEAMGTFNKLDEFGLKD-------------------------------------------------------------- 100 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~-------------------------------------------------------------- 100 (403)
+++|+..|+++.+.++.+
T Consensus 89 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFF 168 (514)
T ss_dssp HHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHH
Confidence 999999999998877532
Q ss_pred -----------------HHHHHHHHHHHHh---cCCHHHHHHHHhcccc-----ccccccc--ccCcchHHHHHHHHHHH
Q 041804 101 -----------------EVSYCNLVDALCE---YKHVIEAQELCFGENK-----NVGFSGL--VEMNKTKIYNMILRGWF 153 (403)
Q Consensus 101 -----------------~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~l~~~~~ 153 (403)
...+......+.. .|++++|...++++.. ....... ..+.+..++..+...+.
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (514)
T 2gw1_A 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKF 248 (514)
T ss_dssp TTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHH
Confidence 3333334444443 8999999999988776 2000000 01456778899999999
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
..|++++|...|+++.+.+.. ..++..+..++...|++++|...++.+.... +.+..++..+...+...|+++.|..
T Consensus 249 ~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 325 (514)
T 2gw1_A 249 LKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGK 325 (514)
T ss_dssp HSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHH
T ss_pred HCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999999999999887655 8889999999999999999999999998874 4467788999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH---hhCCHHHHHHHHHHHHHcCC
Q 041804 234 VYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR---CLEKPREILGLFDRMIESGI 310 (403)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~ 310 (403)
.++.+.+.... +...+..+...|...|++++|...++++.+... .+...+..+.. ..++.++|...++.+.+...
T Consensus 326 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 326 DFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP-EAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 99999987543 677888999999999999999999999886521 13344443333 34889999999999886432
Q ss_pred C-Cc----hhhHHHHHHHHHh---cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 041804 311 R-PK----MDTYVMLLRKFGR---WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 311 ~-~~----~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 382 (403)
. ++ ..++..+...+.. .|++++|...++++.+.. +.+..++..+..+|.+.|++++|...+++..+.. |
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA--R 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--S
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc--c
Confidence 2 12 3388899999999 999999999999998864 5578899999999999999999999999999853 5
Q ss_pred Chhh
Q 041804 383 KPRE 386 (403)
Q Consensus 383 ~~~~ 386 (403)
+...
T Consensus 481 ~~~~ 484 (514)
T 2gw1_A 481 TMEE 484 (514)
T ss_dssp SHHH
T ss_pred ccHH
Confidence 5443
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.7e-23 Score=186.31 Aligned_cols=318 Identities=9% Similarity=-0.017 Sum_probs=259.9
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 50 SWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 50 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
+...+.+..... +.+...+..+...+.+.|++++|+.+|+++.+..+.+..++..+..++...|++++|...++++..
T Consensus 11 ~~~~~~~~~~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS--MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444433 456788999999999999999999999999998878999999999999999999999999999887
Q ss_pred cccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH---HHHHHH------------HHHHHHcCChh
Q 041804 130 NVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL---HSYSIY------------MDIMCKSGKPW 194 (403)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~ 194 (403)
..+.+..++..+...|.+.|++++|.+.|+++.+.++. +. ..+..+ ...+...|+++
T Consensus 89 -------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 89 -------LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160 (450)
T ss_dssp -------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred -------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence 33567889999999999999999999999999987544 44 566555 44488999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
+|...|+++.+.. +.+..++..+..+|.+.|++++|..+|+.+.+.. +.+..++..+...|...|++++|...|+++.
T Consensus 161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 238 (450)
T 2y4t_A 161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECL 238 (450)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999874 4577889999999999999999999999998864 3478899999999999999999999999998
Q ss_pred hcCCCCChhh-HHH---------------HHHhhCCHHHHHHHHHHHHHcCCC-Cc--hhhHHHHHHHHHhcCCcchHHH
Q 041804 275 KKGCVPDVIT-YHC---------------FFRCLEKPREILGLFDRMIESGIR-PK--MDTYVMLLRKFGRWGFLRPVFV 335 (403)
Q Consensus 275 ~~~~~p~~~~-~~~---------------l~~~~~~~~~a~~~~~~~~~~~~~-~~--~~~~~~li~~~~~~g~~~~a~~ 335 (403)
+. .|+... +.. .....++.++|...++.+.+.... |. ...+..+..++.+.|++++|..
T Consensus 239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 316 (450)
T 2y4t_A 239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIR 316 (450)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 65 454333 222 222338899999999999985432 11 3478888999999999999999
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 336 VWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
.++++.+.. +.+...|..+..+|...|++++|...++++.+ +.|+.
T Consensus 317 ~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~ 362 (450)
T 2y4t_A 317 VCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNEND 362 (450)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSC
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcch
Confidence 999998763 45789999999999999999999999999988 44554
No 10
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.2e-22 Score=181.05 Aligned_cols=341 Identities=9% Similarity=-0.093 Sum_probs=278.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+......+.+.|++++|+..|+++.... |+..+|..+..++...|++++|+..|+++.+.++.+..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 5567888899999999999999999999965 7999999999999999999999999999999998899999999999
Q ss_pred HHhcCCHHHHHHHHhcccccccccc-------------------------------------------------------
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSG------------------------------------------------------- 135 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~------------------------------------------------------- 135 (403)
+...|++++|...|+++....+...
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT 162 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence 9999999999999987754321000
Q ss_pred -----------------cccCcchHHHHHHHHHHHh---cCChhHHHHHHHHHHh-----C--CC------CCcHHHHHH
Q 041804 136 -----------------LVEMNKTKIYNMILRGWFK---MSWWGKCREFWEEMDK-----R--GV------VKDLHSYSI 182 (403)
Q Consensus 136 -----------------~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~--~~------~~~~~~~~~ 182 (403)
...+.+...+......+.. .|++++|...|+++.+ . .. +.+..++..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (514)
T 2gw1_A 163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH 242 (514)
T ss_dssp HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence 0001224444444444444 8999999999999987 3 11 124567888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGR 262 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (403)
+..++...|++++|...|+++.+.. |+..++..+...+...|+++.|...++.+.+... .+...+..+...|...|+
T Consensus 243 ~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~ 319 (514)
T 2gw1_A 243 TGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQN 319 (514)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999874 3378888999999999999999999999988643 367789999999999999
Q ss_pred HHHHHHHHHhchhcCCCCChhhHHHHHHhh---CCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHH
Q 041804 263 VREAYAVLAEMPKKGCVPDVITYHCFFRCL---EKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339 (403)
Q Consensus 263 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (403)
+++|...|++..+.... +...+..+...+ ++.++|...++.+.+.... +..++..+...+...|++++|...+++
T Consensus 320 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~ 397 (514)
T 2gw1_A 320 YDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDL 397 (514)
T ss_dssp TTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999875322 344455444443 7899999999999886433 567889999999999999999999999
Q ss_pred HHhcCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcC
Q 041804 340 MEELGC-SPD----EFAYNALVDALID---KGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 340 ~~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~ 379 (403)
+.+... .++ ...|..+..++.+ .|++++|...++++....
T Consensus 398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 876421 122 3488999999999 999999999999998853
No 11
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.92 E-value=6.9e-21 Score=165.21 Aligned_cols=307 Identities=13% Similarity=0.061 Sum_probs=223.8
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
++..+..+...+...|++++|...|+++.+.. +.+..++..+..++...|++++|+..|+++.+..+.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 45678888899999999999999999998865 4567889999999999999999999999999988778899999999
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccC---cchHHHHHH------------HHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEM---NKTKIYNMI------------LRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
++...|++++|...+++.... .+ .+...+..+ ...+...|++++|.+.++++.+..+.
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 152 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKS-------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW 152 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTS-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHcCChHHHHHHHHHHHhc-------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999999999999999988763 23 344555544 57778888888888888888776554
Q ss_pred CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--
Q 041804 175 KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNT-- 252 (403)
Q Consensus 175 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 252 (403)
+...+..+..++...|++++|...++.+.+.. +.+..++..+...+...|++++|...++.+.+.... +...+..
T Consensus 153 -~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (359)
T 3ieg_A 153 -DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYK 229 (359)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred -chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHH
Confidence 67778888888888888888888888887763 446677788888888888888888888888776322 2332221
Q ss_pred ----------HHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 041804 253 ----------VIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLR 322 (403)
Q Consensus 253 ----------li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (403)
+...+.+.|++++|...+++..+.. |+...+ ....+..+..
T Consensus 230 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~---------------------------~~~~~~~la~ 280 (359)
T 3ieg_A 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEY---------------------------TVRSKERICH 280 (359)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHH---------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHH---------------------------HHHHHHHHHH
Confidence 2444556666666666666555431 221100 0122444556
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 323 KFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
++...|++++|...+++..+.. +.+..+|..+..+|.+.|++++|...+++..+.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 6667777777777777776652 345666777777777777777777777776653
No 12
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.91 E-value=1.2e-21 Score=179.70 Aligned_cols=358 Identities=10% Similarity=0.002 Sum_probs=276.0
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.+... .+.++.++..+..++.+.|++++|+..|+++.+.. +.+..++..+..++...|+
T Consensus 33 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~ 108 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKYYQYAIEL--DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGN 108 (537)
T ss_dssp HHHHHTTCCC-CHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHhccHHHHHHHHHHHHhh--CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCC
Confidence 3556778999999999998752 24568889999999999999999999999988865 4567888999999999999
Q ss_pred hHHHHHHHHHHhhcCCC-cHH-----------------------------------------------------------
Q 041804 83 VNEAMGTFNKLDEFGLK-DEV----------------------------------------------------------- 102 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~-~~~----------------------------------------------------------- 102 (403)
+++|+..|+.+ ...+. ...
T Consensus 109 ~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (537)
T 3fp2_A 109 FTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSS 187 (537)
T ss_dssp HHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCC
T ss_pred HHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhcc
Confidence 99999988643 22221 100
Q ss_pred --------HHHHHHHHHH--------hcCCHHHHHHHHhcccccccccccccCcc-------hHHHHHHHHHHHhcCChh
Q 041804 103 --------SYCNLVDALC--------EYKHVIEAQELCFGENKNVGFSGLVEMNK-------TKIYNMILRGWFKMSWWG 159 (403)
Q Consensus 103 --------~~~~l~~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~ 159 (403)
....+...+. ..+++++|...++++.... +.+ ..++..+...+...|+++
T Consensus 188 ~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-------p~~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 188 NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-------TVDDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---------CCCHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-------CCcchhhHHHHHHHHHHHHHHHhcccHH
Confidence 1111111111 1247788888888877642 222 335777778889999999
Q ss_pred HHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 160 KCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 160 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
+|.+.|++..+.. |+..++..+...+...|++++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.
T Consensus 261 ~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999875 457889999999999999999999999999874 4467889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC-hhhHHHHHH---hhCCHHHHHHHHHHHHHcCCC----
Q 041804 240 EMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD-VITYHCFFR---CLEKPREILGLFDRMIESGIR---- 311 (403)
Q Consensus 240 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~---- 311 (403)
+.... +...+..+...|...|++++|...++++.+.. |+ ...+..+.. ..++.++|...++++.+....
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 414 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhh
Confidence 87533 56788999999999999999999999998763 33 334444433 348899999999998864311
Q ss_pred -CchhhHHHHHHHHHhc----------CCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 312 -PKMDTYVMLLRKFGRW----------GFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 312 -~~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
.....+......+... |++++|...++++.+.. +.+...+..+..+|.+.|++++|.+.|++..+..
T Consensus 415 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 415 HVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 1122244455677777 99999999999998864 5678899999999999999999999999999854
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.91 E-value=3e-20 Score=161.16 Aligned_cols=281 Identities=9% Similarity=-0.013 Sum_probs=225.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
+...+..+...+...|++++|+..|+++.+..+.+..++..+..++...|++++|...++++.. ..+.+..++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~ 74 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIA-------LKMDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HCTTCHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCcchHH
Confidence 4567888899999999999999999999999888999999999999999999999999999876 335567889
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCC---CCcHHHHHHH------------HHHHHHcCChhHHHHHHHHHHHcCCCC
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGV---VKDLHSYSIY------------MDIMCKSGKPWKAVKLYKEMKKKGIKM 210 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (403)
..+...+...|++++|...|++..+..+ . +...+..+ ...+...|++++|...++++.+.. +.
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~ 152 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VW 152 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CC
Confidence 9999999999999999999999998754 3 44555554 578888999999999999988874 45
Q ss_pred ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH
Q 041804 211 DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR 290 (403)
Q Consensus 211 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 290 (403)
+..++..+...+...|+++.|...++.+.+.. +.+...+..+...+...|++++|...|++..+. .|+...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~------ 223 (359)
T 3ieg_A 153 DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKR------ 223 (359)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchH------
Confidence 67788888899999999999999999988764 346788888999999999999999999888764 233221
Q ss_pred hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCH----HHHHHHHHHHHhcCCHH
Q 041804 291 CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDE----FAYNALVDALIDKGMLD 366 (403)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 366 (403)
+...+..+. .......+...+.+.|++++|...++++.+.. +.+. ..+..+..++.+.|+++
T Consensus 224 -------~~~~~~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 224 -------CFAHYKQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp -------HHHHHHHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred -------HHHHHHHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHH
Confidence 111111111 12233445677889999999999999998864 2233 23556788999999999
Q ss_pred HHHHHHHHHHHc
Q 041804 367 MARKYDEEMFAK 378 (403)
Q Consensus 367 ~a~~~~~~m~~~ 378 (403)
+|...+++..+.
T Consensus 290 ~A~~~~~~~~~~ 301 (359)
T 3ieg_A 290 EAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999999885
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.90 E-value=1.6e-20 Score=160.98 Aligned_cols=294 Identities=10% Similarity=-0.049 Sum_probs=215.9
Q ss_pred CcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHH
Q 041804 27 FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCN 106 (403)
Q Consensus 27 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 106 (403)
.+.++..+..+...+...|++++|..+|+++.+.. +.+...+..++.++...|++++|...++++.+..+.+..++..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 95 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFA 95 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 45566777788888888888888888888887765 3445566677788888888888888888888877778888888
Q ss_pred HHHHHHhcC-CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041804 107 LVDALCEYK-HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMD 185 (403)
Q Consensus 107 l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (403)
+...+...| ++++|...+++.... .+.+..++..+...+...|++++|.+.|++..+.... +...+..+..
T Consensus 96 l~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~ 167 (330)
T 3hym_B 96 VGCYYLMVGHKNEHARRYLSKATTL-------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHTT-------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHH
Confidence 888888888 888888888877663 3455667888888888888888888888888776544 4556667778
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHH
Q 041804 186 IMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG--------CQPSVVTCNTVIKLL 257 (403)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~ 257 (403)
.|...|++++|...+++..+.. +.+..++..+...+...|++++|...++.+.+.. .+....++..+...|
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~ 246 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVC 246 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHH
Confidence 8888888888888888877763 4456677777778888888888888887777642 123345677777777
Q ss_pred HhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHH
Q 041804 258 CENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVW 337 (403)
Q Consensus 258 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 337 (403)
...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.+
T Consensus 247 ~~~g~~~~A~~~~~~a~~~~---------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~ 293 (330)
T 3hym_B 247 RKLKKYAEALDYHRQALVLI---------------------------------PQNASTYSAIGYIHSLMGNFENAVDYF 293 (330)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------------------------TTCSHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhhC---------------------------------ccchHHHHHHHHHHHHhccHHHHHHHH
Confidence 77777777777777665431 114556777788888888888888888
Q ss_pred HHHHhcCCCCCHHHHHHHHHHH-HhcCCH
Q 041804 338 KKMEELGCSPDEFAYNALVDAL-IDKGML 365 (403)
Q Consensus 338 ~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 365 (403)
++..+.. +.+...+..+..++ ...|+.
T Consensus 294 ~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 294 HTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 8887653 44677777777777 345554
No 15
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.89 E-value=1.8e-19 Score=165.15 Aligned_cols=342 Identities=9% Similarity=-0.038 Sum_probs=264.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
....+..+...+.+.|++++|+..|+++.... +.+..+|..+..+|...|++++|++.|+++.+.++.+..++..+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~ 101 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRAS 101 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 35678889999999999999999999999875 4678899999999999999999999999999999889999999999
Q ss_pred HHHhcCCHHHHHHHHhccccccccccc------------------------------ccCcchH----------------
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGL------------------------------VEMNKTK---------------- 143 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~---------------- 143 (403)
++...|++++|...|+.+......... ...|+..
T Consensus 102 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 102 ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999999988644222100000 0001100
Q ss_pred --------------HHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCc-------HHHHHHHHHHHHHcCChh
Q 041804 144 --------------IYNMILRGWFK--------MSWWGKCREFWEEMDKRGVVKD-------LHSYSIYMDIMCKSGKPW 194 (403)
Q Consensus 144 --------------~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~ 194 (403)
....+...+.. .|++++|..+++++.+..+. + ..++..+...+...|+++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~ 260 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLL 260 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHH
Confidence 12222222222 24789999999999887544 3 235777778889999999
Q ss_pred HHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 195 KAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 195 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
+|...|+...+. .|+..++..+...+...|+++.|...++.+.+... .+..++..+...+...|++++|...|++..
T Consensus 261 ~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 261 DAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999987 45678888999999999999999999999998753 367889999999999999999999999998
Q ss_pred hcCCCCChhhHHHHHH---hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-----CC
Q 041804 275 KKGCVPDVITYHCFFR---CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG-----CS 346 (403)
Q Consensus 275 ~~~~~p~~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~ 346 (403)
+.... +...+..+.. ..++.++|...++++.+.... +...+..+...+...|++++|.+.++++.+.. ..
T Consensus 338 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 415 (537)
T 3fp2_A 338 SLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIH 415 (537)
T ss_dssp HHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhH
Confidence 75321 2334444433 348899999999999987533 56788999999999999999999999987642 11
Q ss_pred CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 041804 347 PDEFAYNALVDALIDK----------GMLDMARKYDEEMFAKG 379 (403)
Q Consensus 347 ~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~ 379 (403)
.....+.....++.+. |++++|...+++..+..
T Consensus 416 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 458 (537)
T 3fp2_A 416 VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD 458 (537)
T ss_dssp STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC
Confidence 2233345556777888 99999999999998853
No 16
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.88 E-value=1.7e-20 Score=163.57 Aligned_cols=290 Identities=11% Similarity=-0.025 Sum_probs=195.3
Q ss_pred ccCChhHHHH-HHHHhhhCCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHH
Q 041804 43 KFFEFDLSWN-LIHRMKDNPSSIP--NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIE 119 (403)
Q Consensus 43 ~~~~~~~a~~-~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 119 (403)
-.|++++|.. .+++........| +...+..+...+...|++++|+..|+++.+..+.+..++..+..++...|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 4477888887 7776555431122 345677788888888888888888888888877788888888888888888888
Q ss_pred HHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH---------------HH
Q 041804 120 AQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI---------------YM 184 (403)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~ 184 (403)
|...++++.. ..+.+..++..+...|...|++++|.+.++++....+. +...+.. .+
T Consensus 117 A~~~~~~al~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 117 AISALRRCLE-------LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp HHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTT
T ss_pred HHHHHHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHH
Confidence 8888887776 33556777888888888888888888888888776544 2222221 12
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 041804 185 DIMCKSGKPWKAVKLYKEMKKKGIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV 263 (403)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (403)
..+...|++++|...|+++.+..... +..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~ 267 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQS 267 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCH
Confidence 33336667777777777766653111 35566666667777777777777777766653 22455666666667777777
Q ss_pred HHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 264 REAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 264 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
++|...|+++.+. . +.+..++..+..++.+.|++++|...++++.+.
T Consensus 268 ~~A~~~~~~al~~--------------------------------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 268 EEAVAAYRRALEL--------------------------------Q-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHHHHHHHHHHHH--------------------------------C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------------------------------C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 7766666665542 1 124567788888888999999999999888764
Q ss_pred CCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 041804 344 GCS----------PDEFAYNALVDALIDKGMLDMARKYDEE 374 (403)
Q Consensus 344 ~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 374 (403)
... ....+|..+..+|.+.|++++|..++++
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 315 QRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp HHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred CCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 211 1267889999999999999999888764
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.87 E-value=5.7e-20 Score=160.16 Aligned_cols=301 Identities=10% Similarity=-0.041 Sum_probs=233.6
Q ss_pred ccccHHHHHH-hhhhhcccCCCcC--CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 7 YANDWKRALE-FFNWVETDCHFTH--TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 7 ~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
..|++++|++ .|+.........| +...+..+...+.+.|++++|...|+++.+.. +.+..+|..+..++...|++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCH
Confidence 4578888888 8876654222222 35678889999999999999999999999875 46788999999999999999
Q ss_pred HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHH---------------H
Q 041804 84 NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM---------------I 148 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------l 148 (403)
++|+..|+++.+..+.+..++..+..++...|++++|...++++.... +.+...+.. .
T Consensus 115 ~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (368)
T 1fch_A 115 LLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT-------PAYAHLVTPAEEGAGGAGLGPSKRI 187 (368)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------TTTGGGCC---------------CT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------cCcHHHHHHHHHHhhhhcccHHHHH
Confidence 999999999999988899999999999999999999999999887642 222222211 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 227 (403)
+..+...|++++|...|+++.+..+.. +..++..+..+|...|++++|...|+++.... +.+..++..+...+...|+
T Consensus 188 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 188 LGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCC
Confidence 333448899999999999998875442 57889999999999999999999999998873 4467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHH
Q 041804 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIE 307 (403)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~ 307 (403)
+++|...|+.+.+.. +.+...+..+...|.+.|++++|...|++..+. .|+...- ..
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~--------------------~~ 323 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNM--QRKSRGP--------------------RG 323 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHTC-------------------------
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCCCc--------------------cc
Confidence 999999999999874 346788999999999999999999999987753 1111000 00
Q ss_pred cCCCCchhhHHHHHHHHHhcCCcchHHHHHHHH
Q 041804 308 SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKM 340 (403)
Q Consensus 308 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 340 (403)
........+|..+..++...|++++|..++++.
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 001224678899999999999999999887643
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.87 E-value=1.1e-19 Score=155.78 Aligned_cols=260 Identities=11% Similarity=-0.037 Sum_probs=227.5
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-C
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH-L 82 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 82 (403)
.+...|++++|+++|+.+... .+.+...+..++.++...|++++|..+++++.+.. +.+..+|..+...+...| +
T Consensus 31 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 31 RHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhh
Confidence 345679999999999998853 24456677788899999999999999999999865 356788999999999999 9
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCR 162 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 162 (403)
+++|+..|++..+..+.+...+..+..++...|++++|...+++.... .+.+..++..+...|...|++++|.
T Consensus 107 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (330)
T 3hym_B 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL-------MKGCHLPMLYIGLEYGLTNNSKLAE 179 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------TTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------ccccHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999998888999999999999999999999999998773 3556677888999999999999999
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--------CCCChhhHHHHHHHHhhcCCHHHHHHH
Q 041804 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG--------IKMDVVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
+.+++..+..+. +..++..+...+...|++++|...+++..+.. .+....++..+..++...|++++|...
T Consensus 180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 258 (330)
T 3hym_B 180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY 258 (330)
T ss_dssp HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 999999988765 78899999999999999999999999988752 133456889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 235 YREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
++.+.+... .+...+..+...|...|++++|...|++..+.
T Consensus 259 ~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 259 HRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999998753 36788999999999999999999999998865
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.86 E-value=4e-17 Score=147.64 Aligned_cols=337 Identities=11% Similarity=0.019 Sum_probs=271.2
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHc----cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGK----FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT---- 79 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 79 (403)
.+++++|++.|+.... . .++..+..+...|.. .+++++|..+|++..+.+ +..++..|...|..
T Consensus 56 ~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~ 127 (490)
T 2xm6_A 56 TKDLTQAMDWFRRAAE-Q---GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGV 127 (490)
T ss_dssp CCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSS
T ss_pred CcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCC
Confidence 6789999999988875 2 457788888888888 899999999999988754 66777788888888
Q ss_pred cCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh-
Q 041804 80 AHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE----YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK- 154 (403)
Q Consensus 80 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 154 (403)
.+++++|+++|++..+.+ ++..+..+...|.. .++.++|...|++.... .+...+..+...|..
T Consensus 128 ~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g 196 (490)
T 2xm6_A 128 KVDKAESVKWFRLAAEQG--RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---------GNVWSCNQLGYMYSRG 196 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHhcC
Confidence 789999999999988754 66778888888887 78999999999887653 356778888888887
Q ss_pred ---cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh---
Q 041804 155 ---MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV--- 224 (403)
Q Consensus 155 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--- 224 (403)
.+++++|.+.|++..+.+ +..++..+...|.. .+++++|..+|++..+.| +...+..+...|..
T Consensus 197 ~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~ 270 (490)
T 2xm6_A 197 LGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLA 270 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTT
T ss_pred CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCC
Confidence 889999999999988864 56677888888876 789999999999988765 45566667777776
Q ss_pred -cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CcHHHHHHHHHhchhcCCCCChhhHHHHHHhh---C--
Q 041804 225 -SEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCEN-----GRVREAYAVLAEMPKKGCVPDVITYHCFFRCL---E-- 293 (403)
Q Consensus 225 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~-- 293 (403)
.++.++|...|+...+.| +...+..+...|... ++.++|...|++..+.+. ...+..+-..+ +
T Consensus 271 ~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~---~~a~~~lg~~y~~~g~~ 344 (490)
T 2xm6_A 271 GAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD---ATAQANLGAIYFRLGSE 344 (490)
T ss_dssp SSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCH
T ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCc
Confidence 789999999999988764 566777788888877 899999999999887642 22333222222 2
Q ss_pred -CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 041804 294 -KPREILGLFDRMIESGIRPKMDTYVMLLRKFGR----WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID----KGM 364 (403)
Q Consensus 294 -~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 364 (403)
+.++|.++|++..+.+ +...+..+...|.. .+++++|...|++..+.+ ++..+..+...|.+ .++
T Consensus 345 ~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d 418 (490)
T 2xm6_A 345 EEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERD 418 (490)
T ss_dssp HHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred ccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCC
Confidence 5788999999998864 56788888888888 889999999999998865 57788888888988 899
Q ss_pred HHHHHHHHHHHHHcCCC
Q 041804 365 LDMARKYDEEMFAKGLS 381 (403)
Q Consensus 365 ~~~a~~~~~~m~~~~~~ 381 (403)
.++|..+|++..+.+..
T Consensus 419 ~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 419 YVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHCCCC
Confidence 99999999999987743
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=1.6e-19 Score=157.10 Aligned_cols=285 Identities=9% Similarity=-0.082 Sum_probs=218.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
+...+..+...+.+.|++++|+.+|+++.+.. +.+..+|..+..++...|++++|+..|+++.+..+.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45568899999999999999999999999875 4578899999999999999999999999999998889999999999
Q ss_pred HHHhcCCHHHHHHHHhccccccccccccc---CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVE---MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV-KDLHSYSIYMD 185 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~ 185 (403)
+|...|++++|...++++....+...... ......+..+...+...|++++|.+.|+++.+..+. ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 99999999999999998876321000000 001233445688899999999999999999887543 26788999999
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 041804 186 IMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265 (403)
Q Consensus 186 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (403)
.|...|++++|.+.|+++.+.. +.+..++..+..+|...|++++|...|+.+.+... .+..++..+..+|.+.|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999998874 44678999999999999999999999999998743 357889999999999999999
Q ss_pred HHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHH
Q 041804 266 AYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKK 339 (403)
Q Consensus 266 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 339 (403)
|...|++..+. .|+...-. .......+...|..+..++...|+.+.+..+.++
T Consensus 300 A~~~~~~al~~--~~~~~~~~-------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSL--QRKSRNQQ-------------------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHH--HHCC-------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CcccCCCc-------------------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999988753 12110000 0000112456778888888888888887776654
No 21
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.85 E-value=1.6e-19 Score=154.62 Aligned_cols=253 Identities=10% Similarity=-0.035 Sum_probs=112.0
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
..|++++|+++|+.+... .+.+..++..+..++...|++++|...++++.+.. +.+..++..+...+...|++++|
T Consensus 33 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~~~~A 108 (327)
T 3cv0_A 33 KLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD--PKDIAVHAALAVSHTNEHNANAA 108 (327)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cCCHHHHHHHHHHHHHcCCHHHH
Confidence 344555555555444421 12234444444455555555555555555444432 22344444445555555555555
Q ss_pred HHHHHHHhhcCCCcHHHHHHH--------------HH-HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNL--------------VD-ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (403)
++.++++.+..+.+...+..+ .. .+...|++++|...++++.. ..+.+..++..+...
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~la~~ 181 (327)
T 3cv0_A 109 LASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALE-------MNPNDAQLHASLGVL 181 (327)
T ss_dssp HHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHH-------HSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHh-------hCCCCHHHHHHHHHH
Confidence 555555544443333333222 11 23344444455444444443 122234444444445
Q ss_pred HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHH
Q 041804 152 WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFA 231 (403)
Q Consensus 152 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 231 (403)
+...|++++|.+.++++.+..+. +..++..+..++...|++++|...|+++.+.. +.+..++..+...+...|++++|
T Consensus 182 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A 259 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLA 259 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 55555555555555544443322 34444444445555555555555555444432 22334444444444455555555
Q ss_pred HHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 232 MRVYREMREMGCQP-----------SVVTCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 232 ~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
...++.+.+..... +...+..+..++.+.|++++|..++++
T Consensus 260 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 55554444432111 233444444445555555555444443
No 22
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=7.9e-20 Score=159.12 Aligned_cols=260 Identities=7% Similarity=-0.076 Sum_probs=215.4
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.+... .+.+..++..+..++.+.|++++|+..|+++.+.. +.+..+|..+..+|...|+
T Consensus 73 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~ 148 (365)
T 4eqf_A 73 LKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAVSYTNTSH 148 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHcccc
Confidence 3456789999999999999852 34568899999999999999999999999999865 4568899999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHH----------HHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYC----------NLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
+++|+..|+++.+..+.+...+. .+...+...|++++|...++++.... ....+..++..+...|
T Consensus 149 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~~~~l~~~~ 223 (365)
T 4eqf_A 149 QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-----GDMIDPDLQTGLGVLF 223 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-----CSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-----cCccCHHHHHHHHHHH
Confidence 99999999999987765444443 34888999999999999999988742 1122688999999999
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHH
Q 041804 153 FKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAM 232 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 232 (403)
...|++++|.+.|++..+..+. +..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999987655 78899999999999999999999999999873 445788999999999999999999
Q ss_pred HHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 233 RVYREMREMGCQ-----------PSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 233 ~~~~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
..|+++.+.... .+...|..+..++...|+.+.+..+..+-
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 353 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGD 353 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTC
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhh
Confidence 999999875311 13678899999999999999998887763
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.83 E-value=4.2e-18 Score=145.65 Aligned_cols=281 Identities=9% Similarity=-0.044 Sum_probs=177.0
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
+...+..+...+...|++++|..+|+++.+.. +.+..++..+..++...|++++|...|+++.+..+.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 34455666777777777777777777776654 3456667777777777777777777777777766556666666666
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH-HH-HH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY-MD-IM 187 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~ 187 (403)
.+...|++++|...+++..... +.+...+..+... .|+......+ .. .+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~ 148 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ-------PQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFF 148 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS-------TTTTTC------------------------------------------CCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-------CccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHH
Confidence 7777777777766666655421 1111111111000 0011111111 11 25
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHH
Q 041804 188 CKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAY 267 (403)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 267 (403)
...|++++|...++++.+.. +.+..++..+...+...|++++|...++.+.+... .+...+..+...+...|++++|.
T Consensus 149 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~ 226 (327)
T 3cv0_A 149 AAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEAL 226 (327)
T ss_dssp TSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHH
Confidence 55666777777777766653 33556666677777777777777777777766532 24566777777777777777777
Q ss_pred HHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC
Q 041804 268 AVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP 347 (403)
Q Consensus 268 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 347 (403)
..|+++.+.. | .+..++..+...+...|++++|.+.++++.+.....
T Consensus 227 ~~~~~a~~~~--~-------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 273 (327)
T 3cv0_A 227 DAYNRALDIN--P-------------------------------GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGG 273 (327)
T ss_dssp HHHHHHHHHC--T-------------------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcC--C-------------------------------CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 7777665431 1 134567778888888899999999998887653111
Q ss_pred -----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 041804 348 -----------DEFAYNALVDALIDKGMLDMARKYDEEMF 376 (403)
Q Consensus 348 -----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 376 (403)
+...|..+..++.+.|++++|..++++..
T Consensus 274 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 274 TTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp CC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred ccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 47788899999999999999998887543
No 24
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.83 E-value=3.7e-16 Score=142.80 Aligned_cols=355 Identities=8% Similarity=0.060 Sum_probs=227.3
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHH-HhcCChH
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRY-VTAHLVN 84 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~ 84 (403)
...|++++|..+|+.+.. -.+.+...|..++..+.+.|++++|..+|++..... |+...|...+... ...|+.+
T Consensus 23 ~~~~~~~~a~~~~e~al~--~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~ 97 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVA--QFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLP 97 (530)
T ss_dssp HHSSCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTST
T ss_pred HHhCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchh
Confidence 346899999999999984 346678899999999999999999999999999865 7888888777533 4567777
Q ss_pred HHHH----HHHHHhhc-C--CCcHHHHHHHHHHHHh---------cCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 85 EAMG----TFNKLDEF-G--LKDEVSYCNLVDALCE---------YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 85 ~a~~----~~~~~~~~-~--~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.|.+ +|++.... | +.+...|...+....+ .|+++.|..+|++..... ..+....|...
T Consensus 98 ~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P------~~~~~~~~~~~ 171 (530)
T 2ooe_A 98 SYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP------MINIEQLWRDY 171 (530)
T ss_dssp THHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC------CTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch------hhhHHHHHHHH
Confidence 7665 77766543 3 2367788888777655 688999999998877631 11111222211
Q ss_pred HHHH-------------HhcCChh--------------------------------------------------------
Q 041804 149 LRGW-------------FKMSWWG-------------------------------------------------------- 159 (403)
Q Consensus 149 ~~~~-------------~~~~~~~-------------------------------------------------------- 159 (403)
.... .+.+++.
T Consensus 172 ~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~ 251 (530)
T 2ooe_A 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQT 251 (530)
T ss_dssp HHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSH
T ss_pred HHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcch
Confidence 1100 0111222
Q ss_pred ----HHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHHHcCCCCChhhHHHHHHH
Q 041804 160 ----KCREFWEEMDKRGVVKDLHSYSIYMDIMCK-------SGKPW-------KAVKLYKEMKKKGIKMDVVAYNTVIRA 221 (403)
Q Consensus 160 ----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~ll~~ 221 (403)
.+..+|++.....+. +...|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..++..
T Consensus 252 ~~~~~a~~~y~~al~~~p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~ 330 (530)
T 2ooe_A 252 LITKRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADY 330 (530)
T ss_dssp HHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 344455555444332 45566666666554 56665 677777776652123345666777777
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC-hhhHH--HHHH--hhCC
Q 041804 222 VGVSEGVDFAMRVYREMREMGCQPS--VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD-VITYH--CFFR--CLEK 294 (403)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~--~l~~--~~~~ 294 (403)
+.+.|+++.|..+|+.+.+. .|+ ...|..++..+.+.|++++|..+|++..+. .|. ...|. +.+. ..++
T Consensus 331 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~ 406 (530)
T 2ooe_A 331 EESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKD 406 (530)
T ss_dssp HHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCC
T ss_pred HHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCC
Confidence 77777777777777777764 333 246666777777777777777777776654 222 11111 1221 2466
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 295 PREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELG-CSP--DEFAYNALVDALIDKGMLDMARKY 371 (403)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 371 (403)
.++|..+|+...+... -+...|..++..+.+.|+.++|..+|++....+ ..| ....|...+....+.|+.+.+..+
T Consensus 407 ~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~ 485 (530)
T 2ooe_A 407 KSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 485 (530)
T ss_dssp HHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777766432 245667777777777777777777777776652 122 234666667776777777777777
Q ss_pred HHHHHH
Q 041804 372 DEEMFA 377 (403)
Q Consensus 372 ~~~m~~ 377 (403)
.+++.+
T Consensus 486 ~~r~~~ 491 (530)
T 2ooe_A 486 EKRRFT 491 (530)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777665
No 25
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.82 E-value=9.3e-16 Score=138.73 Aligned_cols=336 Identities=12% Similarity=0.079 Sum_probs=272.6
Q ss_pred cCCHHhHHHHHHHHHc----cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCC
Q 041804 28 THTTDTYNSVIDILGK----FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT----AHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 99 (403)
..++..+..+...|.. .+++++|..+|++..+.+ +..++..|...|.. .+++++|+++|++..+.+
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG-- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 4577888888888888 899999999999998864 67788889999998 999999999999998854
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh----cCChhHHHHHHHHHHhC
Q 041804 100 DEVSYCNLVDALCE----YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK----MSWWGKCREFWEEMDKR 171 (403)
Q Consensus 100 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 171 (403)
++..+..|...|.. .+++++|...|++.... .+...+..+...|.. .+++++|.+.|++..+.
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~ 180 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ 180 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 66778888888888 78999999999987663 356678888888887 78999999999999887
Q ss_pred CCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcCC
Q 041804 172 GVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV----SEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 172 ~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~ 243 (403)
+ +..++..+...|.. .+++++|.++|++..+.| +...+..+...|.. .+++++|..+|+...+.+
T Consensus 181 ~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~- 253 (490)
T 2xm6_A 181 G---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG- 253 (490)
T ss_dssp T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT-
T ss_pred C---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-
Confidence 4 67788899999988 899999999999998875 56677778777775 789999999999998764
Q ss_pred CCCHHHHHHHHHHHHh----cCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh-----CCHHHHHHHHHHHHHcCCCCch
Q 041804 244 QPSVVTCNTVIKLLCE----NGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL-----EKPREILGLFDRMIESGIRPKM 314 (403)
Q Consensus 244 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~~~a~~~~~~~~~~~~~~~~ 314 (403)
+...+..+...|.. .++.++|...|++..+.|...-......+.... .+.++|..++++..+.+ +.
T Consensus 254 --~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~ 328 (490)
T 2xm6_A 254 --NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DA 328 (490)
T ss_dssp --CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CH
T ss_pred --CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CH
Confidence 56677778888887 899999999999988764321111112222222 57899999999999875 45
Q ss_pred hhHHHHHHHHHhcC---CcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCChhhH
Q 041804 315 DTYVMLLRKFGRWG---FLRPVFVVWKKMEELGCSPDEFAYNALVDALID----KGMLDMARKYDEEMFAKGLSAKPREE 387 (403)
Q Consensus 315 ~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~ 387 (403)
..+..+...|...| ++++|.+.|++..+. .++..+..+...|.. .+++++|..+|++..+.|. |+....
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~-~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGL-SAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCC-HHHHHH
Confidence 57777777777766 789999999999886 467889999999998 8999999999999998863 555555
Q ss_pred HHHHHHh
Q 041804 388 LGTKLVQ 394 (403)
Q Consensus 388 ~~~~~~~ 394 (403)
++.....
T Consensus 405 Lg~~y~~ 411 (490)
T 2xm6_A 405 LGEIYYY 411 (490)
T ss_dssp HHHHHHH
T ss_pred HHHHHHc
Confidence 5555554
No 26
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=4e-17 Score=136.64 Aligned_cols=247 Identities=9% Similarity=0.044 Sum_probs=118.8
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCc-HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 77 YVTAHLVNEAMGTFNKLDEFGLKD-EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
....|++..|+..++......+.+ ......+.++|...|+++.|...++. ..+|+..++..+...+...
T Consensus 9 ~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----------~~~~~~~a~~~la~~~~~~ 78 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----------SSAPELQAVRMFAEYLASH 78 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----------TSCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----------cCChhHHHHHHHHHHHcCC
Confidence 344556666665555544433332 23444455566666666665554432 1234555555566666666
Q ss_pred CChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHH
Q 041804 156 SWWGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
++.++|.+.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..+...+.+.|++++|...
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~ 152 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKE 152 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 66666666666655544323 334444445556666666666665554 23445555555556666666666666
Q ss_pred HHHHHHcCCCCCHHHH---HHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH---hhCCHHHHHHHHHHHHHc
Q 041804 235 YREMREMGCQPSVVTC---NTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR---CLEKPREILGLFDRMIES 308 (403)
Q Consensus 235 ~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~---~~~~~~~a~~~~~~~~~~ 308 (403)
|+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+.. ..+++++|...+++..+.
T Consensus 153 l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 153 LKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66655542 222111 111222223345555555555544431 112222222111 113333333333333332
Q ss_pred CCCCchhhHHHHHHHHHhcCCcch-HHHHHHHHHhc
Q 041804 309 GIRPKMDTYVMLLRKFGRWGFLRP-VFVVWKKMEEL 343 (403)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~ 343 (403)
... +..++..++..+...|+.++ +.++++++.+.
T Consensus 230 ~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 230 DSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp CTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 221 44556666666666666544 44566665554
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.82 E-value=3.7e-17 Score=147.37 Aligned_cols=364 Identities=13% Similarity=-0.015 Sum_probs=243.0
Q ss_pred cccccccccHHHHHHhhhhhcc-------cCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhC-----CCC-CCCHH
Q 041804 2 ETLSCYANDWKRALEFFNWVET-------DCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDN-----PSS-IPNHA 68 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-----~~~-~~~~~ 68 (403)
+.++...|++++|++.|+.... ....+....+|+.+..+|...|++++|...+++..+. +.. .....
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~ 137 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPE 137 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHH
Confidence 4567778999999999987643 1112334678999999999999999999999877542 101 12355
Q ss_pred HHHHHHHHHHhc--CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH---hcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 69 TFRIMFKRYVTA--HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC---EYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 69 ~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
++..+..++... +++++|+..|++..+..+.++..+..+..++. ..++.++|...+++... ..+.+..
T Consensus 138 ~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~-------l~p~~~~ 210 (472)
T 4g1t_A 138 LDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR-------LNPDNQY 210 (472)
T ss_dssp HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH-------HCSSCHH
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh-------cCCcchH
Confidence 677666666654 46899999999999999888888777766644 45677788888877665 3345566
Q ss_pred HHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHH
Q 041804 144 IYNMILRGWFK----MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVI 219 (403)
Q Consensus 144 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 219 (403)
++..+...+.. .+++++|.+.+++.....+. +..++..+...|...|++++|...+++..+.. +-+..++..+.
T Consensus 211 ~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 288 (472)
T 4g1t_A 211 LKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIG 288 (472)
T ss_dssp HHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHH
Confidence 66666655544 46788999999999887665 77889999999999999999999999998873 33555666665
Q ss_pred HHHhh-------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC
Q 041804 220 RAVGV-------------------SEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 220 ~~~~~-------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 280 (403)
.+|.. .+..+.|...++...+... .+...+..+...|...|++++|...|++..+....|
T Consensus 289 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~ 367 (472)
T 4g1t_A 289 CCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTP 367 (472)
T ss_dssp HHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCC
Confidence 55532 2235678888888877643 356678889999999999999999999988764333
Q ss_pred Chh--hH---HHH-HHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHH
Q 041804 281 DVI--TY---HCF-FRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNA 354 (403)
Q Consensus 281 ~~~--~~---~~l-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 354 (403)
... .+ ..+ ....++.++|+..|++..+. .|+...... ....+..++++..+.. +.+..+|..
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~ 435 (472)
T 4g1t_A 368 VAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHV 435 (472)
T ss_dssp HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHH
T ss_pred hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 221 11 111 12336788999999998874 344332222 2234455666665553 567889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCCChhhH
Q 041804 355 LVDALIDKGMLDMARKYDEEMFAKG-LSAKPREE 387 (403)
Q Consensus 355 l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~ 387 (403)
+..+|...|++++|++.|++.++.+ ..|+..+.
T Consensus 436 LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 436 LAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHHHHHHHCC----------------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999999999998863 34554443
No 28
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.82 E-value=1.8e-17 Score=138.67 Aligned_cols=255 Identities=10% Similarity=0.057 Sum_probs=202.7
Q ss_pred cccccHHHHHHhhhhhcccCCCcCC--HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHT--TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
...|++..|++.++.+.. ..|+ ......+.++|...|+++.|+..++.. .+|+..++..+...+...++.
T Consensus 10 ~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-----~~~~~~a~~~la~~~~~~~~~ 81 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-----SAPELQAVRMFAEYLASHSRR 81 (291)
T ss_dssp HHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-----SCHHHHHHHHHHHHHHCSTTH
T ss_pred HHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-----CChhHHHHHHHHHHHcCCCcH
Confidence 356899999999877653 2333 345567789999999999999866542 357788899999999999999
Q ss_pred HHHHHHHHHHhhcC--CCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 84 NEAMGTFNKLDEFG--LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 84 ~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
++|++.++++...+ +.+...+..+..++...|++++|.+.+++ +.+..++..+...+.+.|++++|
T Consensus 82 ~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------------~~~~~~~~~l~~~~~~~g~~~~A 149 (291)
T 3mkr_A 82 DAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------------GDSLECMAMTVQILLKLDRLDLA 149 (291)
T ss_dssp HHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------------CCSHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------------CCCHHHHHHHHHHHHHCCCHHHH
Confidence 99999999998775 44888888999999999999999999876 35667889999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHH---HHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 162 REFWEEMDKRGVVKDLHSY---SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|+++
T Consensus 150 ~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 150 RKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998875 333211 12334444558999999999999988 4667888999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCcHHH-HHHHHHhchhcCCCCChhhHH
Q 041804 239 REMGCQPSVVTCNTVIKLLCENGRVRE-AYAVLAEMPKKGCVPDVITYH 286 (403)
Q Consensus 239 ~~~~~~~~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~~~p~~~~~~ 286 (403)
.+... -+..++..++..+...|+.++ +.++++++.+. .|+.....
T Consensus 227 l~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~~~ 272 (291)
T 3mkr_A 227 LDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPFIK 272 (291)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChHHH
Confidence 88753 377788889999999999875 57888888765 45544333
No 29
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.82 E-value=1.8e-20 Score=173.08 Aligned_cols=116 Identities=11% Similarity=0.126 Sum_probs=62.6
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDK---RGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (403)
..+||++|.+|++.|++++|.++|++|.+ .|+.||..|||+||++|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 34555555555555555555555544432 345555555555555555555555555555555555555555555555
Q ss_pred HHHHhhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041804 219 IRAVGVSEG-VDFAMRVYREMREMGCQPSVVTCNTVIKLL 257 (403)
Q Consensus 219 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 257 (403)
|.++++.|+ .+.|.++|++|.+.|+.||..+|++++..+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~ 246 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE 246 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence 555555554 244555555555555555555555555433
No 30
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.81 E-value=1.3e-18 Score=149.07 Aligned_cols=286 Identities=9% Similarity=0.061 Sum_probs=128.8
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
+.|...-|+.++|.++++.+. ++.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|
T Consensus 10 ~~ll~~~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g 75 (449)
T 1b89_A 10 QVLIEHIGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSG 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCC
Confidence 456667788999999999884 2359999999999999999999999652 67779999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
++++|+..++...+ ..+++.+.+.++.+|.+.|+++++.++++ .|+..+|+.+...|...|.+++|
T Consensus 76 ~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------------~pn~~a~~~IGd~~~~~g~yeeA 141 (449)
T 1b89_A 76 NWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFIN-------------GPNNAHIQQVGDRCYDEKMYDAA 141 (449)
T ss_dssp ----------------------------------CHHHHTTTTT-------------CC----------------CTTTH
T ss_pred CHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHHc-------------CCcHHHHHHHHHHHHHcCCHHHH
Confidence 99999997776666 34578889999999999999999887753 35667999999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 162 REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 142 ~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~---- 202 (449)
T 1b89_A 142 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH---- 202 (449)
T ss_dssp HHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT----
T ss_pred HHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH----
Confidence 9999977 38999999999999999999999988 2789999999999999999999665443
Q ss_pred CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhh--CCHHHHHHHHHHHHH-cCCCC------
Q 041804 242 GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCL--EKPREILGLFDRMIE-SGIRP------ 312 (403)
Q Consensus 242 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~a~~~~~~~~~-~~~~~------ 312 (403)
+...+.....++..|.+.|++++|..+++...... ......|+-+--.+ -++++..+.++.... ..++|
T Consensus 203 -L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~ 280 (449)
T 1b89_A 203 -IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAE 280 (449)
T ss_dssp -TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHH
T ss_pred -HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 22344445678999999999999999999887543 33455555443333 344544444443322 22222
Q ss_pred chhhHHHHHHHHHhcCCcchHHHH
Q 041804 313 KMDTYVMLLRKFGRWGFLRPVFVV 336 (403)
Q Consensus 313 ~~~~~~~li~~~~~~g~~~~a~~~ 336 (403)
+...|.-++-.|...++++.|...
T Consensus 281 ~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 281 QAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHH
Confidence 356788899999999999988874
No 31
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=166.71 Aligned_cols=154 Identities=10% Similarity=0.136 Sum_probs=127.1
Q ss_pred CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 041804 173 VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK---KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT 249 (403)
Q Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (403)
..--..||++||++|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 344567999999999999999999999988764 48999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCc-HHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCc------hhhHHHHHH
Q 041804 250 CNTVIKLLCENGR-VREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPK------MDTYVMLLR 322 (403)
Q Consensus 250 ~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~ 322 (403)
||++|.++++.|+ .++|.++|++|.+.|+.||..+|++++.+.++. .+++..+++ ..++.|+ ..+...|.+
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~-~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA-TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH-HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH-HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999999998 578999999999999999999999887655432 344444444 3344443 334445555
Q ss_pred HHHhcC
Q 041804 323 KFGRWG 328 (403)
Q Consensus 323 ~~~~~g 328 (403)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 665544
No 32
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.8e-18 Score=146.94 Aligned_cols=280 Identities=14% Similarity=0.085 Sum_probs=128.7
Q ss_pred HccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041804 42 GKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
-+.|++++|.++++++.. | .+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~~-----~--~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCNE-----P--AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCCC-----h--HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHH
Confidence 367889999999999832 3 49999999999999999999999652 47779999999999999999999
Q ss_pred HHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHH
Q 041804 122 ELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYK 201 (403)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 201 (403)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|.
T Consensus 82 ~yl~~ark~--------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~ 146 (449)
T 1b89_A 82 KYLQMARKK--------ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYN 146 (449)
T ss_dssp -----------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHH
T ss_pred HHHHHHHHh--------CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 977766653 3457788999999999999999998885 3677899999999999999999999999
Q ss_pred HHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCC
Q 041804 202 EMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPD 281 (403)
Q Consensus 202 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 281 (403)
.+ ..|..++.++.+.|+++.|.+.++++ .++.+|..++.+|...|+++.|......+. +.|+
T Consensus 147 ~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad 208 (449)
T 1b89_A 147 NV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD 208 (449)
T ss_dssp HT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH
T ss_pred Hh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh
Confidence 76 47899999999999999999999988 278999999999999999999977666543 2343
Q ss_pred hhhHHHHHH---hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHh-cCCCC------CHHH
Q 041804 282 VITYHCFFR---CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEE-LGCSP------DEFA 351 (403)
Q Consensus 282 ~~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~~~~------~~~~ 351 (403)
. ...++. ..|+++++..+++...... +-....|+-+.-+|++- ++++..+.++...+ .+++| +...
T Consensus 209 ~--l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~ 284 (449)
T 1b89_A 209 E--LEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHL 284 (449)
T ss_dssp H--HHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTC
T ss_pred h--HHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3 333443 4488999999999988654 34566777777777664 34444444443322 23333 4667
Q ss_pred HHHHHHHHHhcCCHHHHHH
Q 041804 352 YNALVDALIDKGMLDMARK 370 (403)
Q Consensus 352 ~~~l~~~~~~~g~~~~a~~ 370 (403)
|.-++-.|.+.++++.|..
T Consensus 285 w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhhchHHHHHH
Confidence 9999999999999998876
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=9.5e-17 Score=128.48 Aligned_cols=198 Identities=12% Similarity=-0.006 Sum_probs=125.4
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
++++..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+..+.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 5677889999999999999999999999999876 46788999999999999999999999999999998899999999
Q ss_pred HHHHHhc-----------CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc
Q 041804 108 VDALCEY-----------KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 108 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 176 (403)
..++... |++++|...+++... ..|.+..++..+...+...|++++|...|++..+.+ .+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-------~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~ 150 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER-------VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DT 150 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CC
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cc
Confidence 9998887 555555555555444 223334445555555555555555555555554444 24
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 041804 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYRE 237 (403)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (403)
...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|++++|...+++
T Consensus 151 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 151 PEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC-------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 4445555555555555555555555554442 22334444444444455555555444443
No 34
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.77 E-value=1e-16 Score=128.34 Aligned_cols=201 Identities=10% Similarity=-0.070 Sum_probs=168.0
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
+++...+..+...+.+.|++++|+..|++..+..+.+...+..+..++.+.|++++|...+++... ..|.+..
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------~~P~~~~ 74 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA-------RTPRYLG 74 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCcHH
Confidence 467778999999999999999999999999999988999999999999999999999999999887 4466788
Q ss_pred HHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 041804 144 IYNMILRGWFKM-----------SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV 212 (403)
Q Consensus 144 ~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (403)
.+..+...+... |++++|...|++..+..+. +...+..+..++...|++++|+..|++..+.. .+.
T Consensus 75 a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~ 151 (217)
T 2pl2_A 75 GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTP 151 (217)
T ss_dssp HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH
T ss_pred HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cch
Confidence 899999999999 9999999999999988766 78899999999999999999999999999987 688
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 213 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
..+..+..++...|++++|...|+.+.+..+ .+...+..+...+.+.|++++|...|++...
T Consensus 152 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 152 EIRSALAELYLSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 8999999999999999999999999998743 3678888899999999999999999987653
No 35
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=1.2e-14 Score=132.74 Aligned_cols=339 Identities=9% Similarity=-0.005 Sum_probs=238.0
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
+-+...|..++.. .+.|++++|..+|+++.+.. +.+...|...+..+.+.|++++|..+|++.....+ +...|...
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p-~~~lw~~~ 85 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVL-HIDLWKCY 85 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCC-CHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-ChHHHHHH
Confidence 4578899999984 78999999999999999875 45678899999999999999999999999999875 66677777
Q ss_pred HHHH-HhcCCHHHHHH----HHhcccccccccccccCcchHHHHHHHHHHHh---------cCChhHHHHHHHHHHhCCC
Q 041804 108 VDAL-CEYKHVIEAQE----LCFGENKNVGFSGLVEMNKTKIYNMILRGWFK---------MSWWGKCREFWEEMDKRGV 173 (403)
Q Consensus 108 ~~~~-~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~ 173 (403)
+... ...|+.+.|.+ +|+......+ ..+++...|...+....+ .|+++.|..+|++..+...
T Consensus 86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g----~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 86 LSYVRETKGKLPSYKEKMAQAYDFALDKIG----MEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHTTTSTTHHHHHHHHHHHHHHHTT----TSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHccchhhHHHHHHHHHHHHHHHCC----CCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 7543 34566666554 6665544321 123456778877776654 6889999999999887311
Q ss_pred CCcHHHHHHHHHHHH-------------HcCChh----------------------------------------------
Q 041804 174 VKDLHSYSIYMDIMC-------------KSGKPW---------------------------------------------- 194 (403)
Q Consensus 174 ~~~~~~~~~l~~~~~-------------~~~~~~---------------------------------------------- 194 (403)
.+....|........ ..+++.
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 111223322111000 011122
Q ss_pred --------------HHHHHHHHHHHcCCCCChhhHHHHHHHHhh-------cCCHH-------HHHHHHHHHHHcCCCCC
Q 041804 195 --------------KAVKLYKEMKKKGIKMDVVAYNTVIRAVGV-------SEGVD-------FAMRVYREMREMGCQPS 246 (403)
Q Consensus 195 --------------~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~ 246 (403)
.+..+|++.... .+-+...|..+...+.+ .|+++ .|..+|+...+.-.+.+
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 333445544443 12345566666666654 68876 88999998886323346
Q ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCCh--hhHHHHHH---hhCCHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 041804 247 VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV--ITYHCFFR---CLEKPREILGLFDRMIESGIRPKMDTYVMLL 321 (403)
Q Consensus 247 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 321 (403)
...|..++..+.+.|++++|..+|+++.+. .|+. ..|..... ..++.++|.++|++..+.... +...|....
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a 397 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHH
Confidence 788899999999999999999999999875 4542 35555444 346788999999999875322 233333322
Q ss_pred HH-HHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 322 RK-FGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 322 ~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
.. +...|++++|..+|++..+.. +.++..|..++..+.+.|+.++|..+|++.+..+
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 22 346899999999999998763 4568999999999999999999999999999874
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.9e-16 Score=126.42 Aligned_cols=225 Identities=14% Similarity=-0.022 Sum_probs=191.5
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc-------HHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD-------EVS 103 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~ 103 (403)
...+..+...+...|++++|...|++..+.. ++..+|..+..++...|++++|+..|++..+..+.+ ..+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 5678888999999999999999999998865 677889999999999999999999999988765443 688
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIY 183 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (403)
+..+..++...|++++|...+++.... .|+. ..+.+.|++++|.+.++++....+. +...+..+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 145 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE--------HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLE 145 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--------Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHH
Confidence 999999999999999999999888764 2332 3566778899999999999887544 66788889
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV 263 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (403)
...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++.+.+... .+...+..+...+...|++
T Consensus 146 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~ 223 (258)
T 3uq3_A 146 GKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQIAVKEY 223 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH-HHHHHHHHHHHHHHHHhhH
Confidence 999999999999999999998874 44678888999999999999999999999988743 3578888899999999999
Q ss_pred HHHHHHHHhchhc
Q 041804 264 REAYAVLAEMPKK 276 (403)
Q Consensus 264 ~~a~~~~~~~~~~ 276 (403)
++|...|++..+.
T Consensus 224 ~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 224 ASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999987754
No 37
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.74 E-value=9.9e-17 Score=133.59 Aligned_cols=226 Identities=8% Similarity=-0.117 Sum_probs=127.8
Q ss_pred cccccccHHHHHHhhhhhcccCCC--cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 4 LSCYANDWKRALEFFNWVETDCHF--THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
+...+|++++|++.|+.+...... +.+..++..+...+...|++++|...|++..+.. +.+..+|..+..++...|
T Consensus 14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~ 91 (275)
T 1xnf_A 14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAG 91 (275)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTT
T ss_pred ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHcc
Confidence 344557777777777766642111 1235566677777777777777777777766654 245666777777777777
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
++++|+..|++..+..+.+..++..+..++...|++++|...++++... .|+.......+..+...|++++|
T Consensus 92 ~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~A 163 (275)
T 1xnf_A 92 NFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--------DPNDPFRSLWLYLAEQKLDEKQA 163 (275)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHCHHHH
T ss_pred CHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHhcCHHHH
Confidence 7777777777777666556666666666666677777776666665542 12222233333344445666666
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHhhcCCHHHHHHHHHHH
Q 041804 162 REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK---MDVVAYNTVIRAVGVSEGVDFAMRVYREM 238 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 238 (403)
...+++....... +...+. ++..+...++.++|...++........ .+..++..+...|...|++++|...|+.+
T Consensus 164 ~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 241 (275)
T 1xnf_A 164 KEVLKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 241 (275)
T ss_dssp HHHHHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555443222 222222 444455555555565555555433110 01244455555555555555555555555
Q ss_pred HHc
Q 041804 239 REM 241 (403)
Q Consensus 239 ~~~ 241 (403)
.+.
T Consensus 242 l~~ 244 (275)
T 1xnf_A 242 VAN 244 (275)
T ss_dssp HTT
T ss_pred HhC
Confidence 543
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.73 E-value=3.9e-15 Score=123.68 Aligned_cols=226 Identities=11% Similarity=0.034 Sum_probs=128.6
Q ss_pred ccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCC
Q 041804 5 SCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN--HATFRIMFKRYVTAHL 82 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~ 82 (403)
+...|++++|++.|+.+... .+.+...+..+..++...|++++|+..+++..+.+ ..|+ ..+|..+...+...|+
T Consensus 13 ~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg~~~~~~~~ 89 (272)
T 3u4t_A 13 LFKNNNYAEAIEVFNKLEAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYGKILMKKGQ 89 (272)
T ss_dssp HHTTTCHHHHHHHHHHHHHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHHHHHHHccc
Confidence 44556666666666666532 12234456666666666666666666666666532 1111 2346666666666666
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCR 162 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 162 (403)
+++|+..|++..+..+.+..++..+..++...|++++|...+++.... .+.+..++..+...+...+++++|.
T Consensus 90 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 90 DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-------SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-------CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666556666666666666666666666666666552 2344455555552333334666666
Q ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHcCC---hhHHHHHHHHHHHcC-CCCC------hhhHHHHHHHHhhcCCHHHHH
Q 041804 163 EFWEEMDKRGVVKDLHSYSIYMDIMCKSGK---PWKAVKLYKEMKKKG-IKMD------VVAYNTVIRAVGVSEGVDFAM 232 (403)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~ll~~~~~~~~~~~a~ 232 (403)
+.|++..+..+. +...+..+..++...++ +++|...+++..+.. -.|+ ..++..+...|...|++++|.
T Consensus 163 ~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 241 (272)
T 3u4t_A 163 SSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD 241 (272)
T ss_dssp HHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 666666655433 34555556666666565 555666666655431 1122 134445555555566666666
Q ss_pred HHHHHHHHc
Q 041804 233 RVYREMREM 241 (403)
Q Consensus 233 ~~~~~~~~~ 241 (403)
..++++.+.
T Consensus 242 ~~~~~al~~ 250 (272)
T 3u4t_A 242 AAWKNILAL 250 (272)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666665554
No 39
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.73 E-value=7.6e-15 Score=120.47 Aligned_cols=202 Identities=12% Similarity=0.032 Sum_probs=119.1
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|++.|+++.+..+.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHH
Confidence 4455666666666666666666666666543 23455666666666666666666666666666655566666666666
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
+...|++++|...++++.... ..+.+..++..+...+...|++++|.+.|++..+.... +...+..+...+...
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDT-----LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKE 188 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCT-----TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHT
T ss_pred HHHHhHHHHHHHHHHHHHhCc-----cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHc
Confidence 666666666666666655410 11234455556666666666666666666666554433 455555666666666
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
|++++|...++.+.+.. +.+...+..+...+...|+.+.|.++++.+.+.
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666666666655542 234445555555555666666666666665554
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.73 E-value=5.4e-16 Score=127.71 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=188.6
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC-CCC----HHHHHHHHHH
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS-IPN----HATFRIMFKR 76 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l~~~ 76 (403)
+..+...|++++|++.|+.+... . .+..++..+..++...|++++|...+++..+..+. .|+ ..++..+..+
T Consensus 12 g~~~~~~~~~~~A~~~~~~a~~~-~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 88 (258)
T 3uq3_A 12 GNKFYKARQFDEAIEHYNKAWEL-H--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNA 88 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-S--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh-h--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHH
Confidence 34566789999999999999863 3 77889999999999999999999999998875310 112 5789999999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC
Q 041804 77 YVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS 156 (403)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (403)
+...|++++|+..|++..+..+. ...+...|++++|...+++... ..+.+..++..+...+...|
T Consensus 89 ~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 89 YHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAY-------VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHH-------cCcchHHHHHHHHHHHHHhc
Confidence 99999999999999999987654 2346677889999999998876 33556788999999999999
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 041804 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236 (403)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 236 (403)
++++|.+.|++..+..+. +..+|..+..++...|++++|...++...+.. +.+..++..+..++...|++++|...++
T Consensus 154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999987665 78899999999999999999999999999874 4467889999999999999999999999
Q ss_pred HHHHc
Q 041804 237 EMREM 241 (403)
Q Consensus 237 ~~~~~ 241 (403)
...+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98875
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=4.7e-14 Score=127.05 Aligned_cols=325 Identities=8% Similarity=-0.099 Sum_probs=189.7
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC----
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDN-------PSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG---- 97 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 97 (403)
.....|+.+..++...|++++|++.|++..+. ...+....+|+.+..+|...|++++|+..+++..+..
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888888888888888765431 0012345678888888888888888888888765431
Q ss_pred ----CCcHHHHHHHHHHHHhc--CCHHHHHHHHhcccccccccccccCcchHHHHHHHHH---HHhcCChhHHHHHHHHH
Q 041804 98 ----LKDEVSYCNLVDALCEY--KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG---WFKMSWWGKCREFWEEM 168 (403)
Q Consensus 98 ----~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~ 168 (403)
+....++..+..++... +++++|...|++.... .|.+...+..+... +...++.++|++.+++.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-------~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~a 201 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-------KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQA 201 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 12455666666555543 4678888888877653 23444455544444 33456677788888877
Q ss_pred HhCCCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 041804 169 DKRGVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244 (403)
Q Consensus 169 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (403)
.+.++. +..++..+...+.. .+++++|.+.+++..... +.+..++..+...|...|+++.|...++++.+..+.
T Consensus 202 l~l~p~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 202 IRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHHCSS-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred hhcCCc-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 776544 55556555554443 456778888888877663 445667777888888888888888888888776332
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 041804 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKF 324 (403)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (403)
+..++..+..+|...+....+.... .. ..........++|...++...+.... +..++..+...+
T Consensus 280 -~~~~~~~lg~~y~~~~~~~~~~~~~----------~~---~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~ 344 (472)
T 4g1t_A 280 -NAYLHCQIGCCYRAKVFQVMNLREN----------GM---YGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLH 344 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC-------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHH----------HH---HHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHH
Confidence 4555666655553321111000000 00 00001112234556666665554322 345566666677
Q ss_pred HhcCCcchHHHHHHHHHhcCCCCCH--HHHHHHHH-HHHhcCCHHHHHHHHHHHHH
Q 041804 325 GRWGFLRPVFVVWKKMEELGCSPDE--FAYNALVD-ALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 325 ~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~a~~~~~~m~~ 377 (403)
...|++++|.+.|++..+....+.. ..+..+.. .+.+.|++++|+..+++.++
T Consensus 345 ~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 345 ALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7777777777777776654322211 11222222 23456667777776666655
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=6.5e-15 Score=118.51 Aligned_cols=204 Identities=7% Similarity=-0.075 Sum_probs=124.6
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+++.+..+.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 45566666777777777777777777666643 2345666667777777777777777777776666556666666666
Q ss_pred HHHhc-CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 110 ALCEY-KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 110 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
.+... |++++|...++++.... ..+.+..++..+...+...|++++|.+.++++.+..+. +...+..+..++.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 158 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADP-----TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKM 158 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTST-----TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCc-----CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHH
Confidence 66666 67777666666655410 12233455666666666666666666666666555433 4555666666666
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
..|++++|...++.+.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 159 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 159 LAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 66666666666666655421134445555555555666666666666665543
No 43
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.72 E-value=1.1e-15 Score=124.81 Aligned_cols=203 Identities=8% Similarity=0.060 Sum_probs=138.6
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
.....|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|+..|+++.+..+.+..++..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHH
Confidence 345667777888888888888888888887754 356777888888888888888888888888887766778888888
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
..+...|++++|...+++... ..+.+..++..+...+...|++++|.+.++++.+.... +...+..+...+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~ 170 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALR-------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLA 170 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHH
Confidence 888888888888888877766 33455667777778888888888888888887766544 5667777777788
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
..|++++|...|+++.+.. +.+..++..+..++...|++++|...++.+.+..
T Consensus 171 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 171 NEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 8888888888887777663 3356677777777777777778877777777653
No 44
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.72 E-value=7.5e-15 Score=118.14 Aligned_cols=212 Identities=11% Similarity=-0.039 Sum_probs=180.2
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.+...+..+...+...|++++|++.|+++.+..+.+...+..+..++...|++++|...+++... ..+.+..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~ 78 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALS-------IKPDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCChHH
Confidence 45678889999999999999999999999998877899999999999999999999999998876 33557788
Q ss_pred HHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 145 YNMILRGWFKM-SWWGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 145 ~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
+..+...+... |++++|.+.++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 157 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTK 157 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHH
Confidence 99999999999 99999999999998832223 36788889999999999999999999998874 34577888999999
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHH
Q 041804 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYH 286 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 286 (403)
...|++++|...++.+.+.....+...+..+...+...|+.+.|..+++.+.+. .|+.....
T Consensus 158 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999999999999988744246777888888889999999999999988754 35544433
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.71 E-value=9.9e-16 Score=127.49 Aligned_cols=249 Identities=8% Similarity=-0.101 Sum_probs=192.5
Q ss_pred HHccCChhHHHHHHHHhhhCCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 41 LGKFFEFDLSWNLIHRMKDNPSSI--PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
+...|++++|+..|+++.+..... .+..++..+...+...|++++|+..|+++.+..+.+..++..+..++...|+++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence 345688999999999998863111 246688899999999999999999999999998889999999999999999999
Q ss_pred HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHH
Q 041804 119 EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVK 198 (403)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 198 (403)
+|...+++... ..+.+..++..+...|...|++++|.+.|+++.+..+ +.......+..+...|++++|..
T Consensus 95 ~A~~~~~~al~-------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~ 165 (275)
T 1xnf_A 95 AAYEAFDSVLE-------LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKE 165 (275)
T ss_dssp HHHHHHHHHHH-------HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHh-------cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHH
Confidence 99999999887 3355678899999999999999999999999988643 33344455556677899999999
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 199 LYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ---PSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
.++...... +++...+ .++..+...++.+.|...++...+.... .+...+..+...|...|++++|...|++..+
T Consensus 166 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 166 VLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 998887763 3444444 4677777888889999998887654211 1257788899999999999999999999887
Q ss_pred cCCCC-ChhhHHHHHHhhCCHHHHHHHH
Q 041804 276 KGCVP-DVITYHCFFRCLEKPREILGLF 302 (403)
Q Consensus 276 ~~~~p-~~~~~~~l~~~~~~~~~a~~~~ 302 (403)
. .| +...+...+...++.++|++.+
T Consensus 244 ~--~p~~~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 244 N--NVHNFVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp T--CCTTCHHHHHHHHHHHHHHHC----
T ss_pred C--CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 5 34 3444444444455666555443
No 46
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.71 E-value=4.8e-15 Score=128.19 Aligned_cols=233 Identities=10% Similarity=0.039 Sum_probs=196.3
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL-VNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
+..+|..+..++.+.|++++|+..+++..... +-+..+|+.+..++...|+ +++|+..|++..+..+.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence 35678888999999999999999999999875 3567889999999999996 99999999999999988999999999
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
.++...|++++|+..++++.. ..+.+..+|..+..++.+.|++++|+..|+++.+.++. +...|+.+..++.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~-------ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILN-------QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVIS 245 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHH-------hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 999999999999999999887 45778889999999999999999999999999998777 8889999999999
Q ss_pred H-cCChhHH-----HHHHHHHHHcCCCCChhhHHHHHHHHhhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041804 189 K-SGKPWKA-----VKLYKEMKKKGIKMDVVAYNTVIRAVGVSE--GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCEN 260 (403)
Q Consensus 189 ~-~~~~~~a-----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (403)
. .|..++| +..|++.+... +-+...|..+...+...| ++++|...+..+ +. .+.+...+..+...|.+.
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 8 6665777 48888888763 335678888888888877 688898888887 33 234667888888888886
Q ss_pred C---------cHHHHHHHHHhc-hh
Q 041804 261 G---------RVREAYAVLAEM-PK 275 (403)
Q Consensus 261 g---------~~~~a~~~~~~~-~~ 275 (403)
| ..++|.++|+++ .+
T Consensus 323 ~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 323 LENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred hcccccchHHHHHHHHHHHHHHHHH
Confidence 4 257888888887 44
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.71 E-value=9.8e-15 Score=119.82 Aligned_cols=208 Identities=10% Similarity=-0.006 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHH
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
...|..+...+...|++++|+..|+++.+..+.+..++..+..++...|++++|...++++... .+.+..++.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-------~~~~~~~~~ 109 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS-------DSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------CcCcHHHHH
Confidence 5678889999999999999999999999988778999999999999999999999999988763 355778899
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS 225 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 225 (403)
.+...|...|++++|.+.++++.+.+..| +...+..+..++...|++++|...+++..+.. +.+...+..+...+...
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 188 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKE 188 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHc
Confidence 99999999999999999999998833333 56788889999999999999999999998874 44677888999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhH
Q 041804 226 EGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITY 285 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 285 (403)
|++++|...++.+.+.. +.+...+..+...+...|+.++|...++++.+. .|+...+
T Consensus 189 g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 189 REYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp TCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 99999999999998763 346778888899999999999999999998875 3544433
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=4.4e-15 Score=123.38 Aligned_cols=236 Identities=10% Similarity=-0.001 Sum_probs=191.4
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCN 106 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~ 106 (403)
|+..+......+...|++++|+..|++..+.. +.+..++..+..++...|++++|+..|++..+.+.. ...+|..
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34566777889999999999999999999875 344558889999999999999999999999984321 3445899
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
+..++...|++++|...+++... ..+.+..++..+...|...|++++|.+.|++..+..+. +...|..+...
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 151 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVD-------RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQA 151 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH-------HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHh-------cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHH
Confidence 99999999999999999999887 34556788999999999999999999999999887554 67777777734
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHHHHH
Q 041804 187 MCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG---VDFAMRVYREMREMG-CQPS------VVTCNTVIKL 256 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~-~~~~------~~~~~~li~~ 256 (403)
+...+++++|.+.|++..+.. +.+...+..+..++...++ .+.|...++++.+.. -.|+ ...|..+...
T Consensus 152 ~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 230 (272)
T 3u4t_A 152 YYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYY 230 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 455569999999999999873 3346777778888888888 888999998887652 1233 2577888899
Q ss_pred HHhcCcHHHHHHHHHhchhc
Q 041804 257 LCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 257 ~~~~g~~~~a~~~~~~~~~~ 276 (403)
|...|++++|...|++..+.
T Consensus 231 ~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 231 YTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999998875
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.70 E-value=2.1e-15 Score=123.01 Aligned_cols=194 Identities=11% Similarity=0.037 Sum_probs=163.6
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
+..+...|++++|++.|+.+.. ..+.+...+..+..++...|++++|...++++.+.. +.+..++..+...+...|
T Consensus 30 a~~~~~~~~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~ 105 (243)
T 2q7f_A 30 MGRGSEFGDYEKAAEAFTKAIE--ENKEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYVVKE 105 (243)
T ss_dssp ------------CCTTHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHHHhc
Confidence 4456778999999999999884 234568899999999999999999999999998865 357888999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
++++|++.|+++.+..+.+...+..+...+...|++++|...+++... ..+.+..++..+...+.+.|++++|
T Consensus 106 ~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 106 MYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVE-------LNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp CHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------hCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999998888889999999999999999999999999876 3355778899999999999999999
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 162 REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
.+.|+++.+.... +..++..+..+|...|++++|...++++.+..
T Consensus 179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999887655 67889999999999999999999999998873
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=2.5e-15 Score=130.00 Aligned_cols=241 Identities=8% Similarity=-0.035 Sum_probs=201.2
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCC-hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFE-FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTA 80 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (403)
+.++...|++++|++.|+.+... .+.+..+|+.+..++...|+ +++|+..|++..... +.+..+|+.+..++...
T Consensus 104 g~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 104 RAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHc
Confidence 34566779999999999998852 24467899999999999997 999999999999976 45788999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh-cCChh
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK-MSWWG 159 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~ 159 (403)
|++++|+..|+++.+.++.+..+|..+..++...|++++|+..++++.. ..+.+..+|+.+..++.. .|..+
T Consensus 180 g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~-------l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 180 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK-------EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred cCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999988999999999999999999999999999887 446788999999999999 66658
Q ss_pred HH-----HHHHHHHHhCCCCCcHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC------
Q 041804 160 KC-----REFWEEMDKRGVVKDLHSYSIYMDIMCKSG--KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE------ 226 (403)
Q Consensus 160 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~------ 226 (403)
+| ++.|++.....+. +...|..+..++...| ++++|++.+..+ +. .+.+...+..+..+|.+.+
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccc
Confidence 87 5889998887766 7889999999999888 689999999888 33 3446678888888888864
Q ss_pred ---CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHH
Q 041804 227 ---GVDFAMRVYREM-REMGCQPS-VVTCNTVIKLLC 258 (403)
Q Consensus 227 ---~~~~a~~~~~~~-~~~~~~~~-~~~~~~li~~~~ 258 (403)
..++|..+++.+ .+. .|. ...|..+...+.
T Consensus 330 ~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 554 343 445555555443
No 51
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.69 E-value=3.1e-13 Score=129.60 Aligned_cols=329 Identities=11% Similarity=0.108 Sum_probs=169.7
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
.++...|.+++|..+|+.... .....+.++. ..+++++|.++.++. -+..+|..+..++...|+
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCC
Confidence 345555666666666665431 1111122211 445555555555533 123445555555555555
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccccccccc--------------------ccccCcch
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFS--------------------GLVEMNKT 142 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--------------------~~~~~~~~ 142 (403)
+++|+..|.+. .|...|..++.++.+.|++++|.+.+....+..... .....++.
T Consensus 1121 ~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ 1195 (1630)
T 1xi4_A 1121 VKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN 1195 (1630)
T ss_pred HHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH
Confidence 55555555332 344555555555555555555555554433320000 00001222
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 143 KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
..|..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+-.+|
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 33334444444555555555555442 14455555555555555555554443 1334555555555
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH--hhCCHHHHHH
Q 041804 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLEKPREILG 300 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~~~~~a~~ 300 (403)
...|++..|...... +..++..+..++..|.+.|.+++|+.+++...... ......|+-+.. +--++++..+
T Consensus 1261 ve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHH
Confidence 555555444443332 22355667788889999999999999997766432 223334433333 3234444444
Q ss_pred HHHHHHHcC-CCC------chhhHHHHHHHHHhcCCcchHHHHHHHHH----------h-cCCCCCHHHHHHHHHHHHhc
Q 041804 301 LFDRMIESG-IRP------KMDTYVMLLRKFGRWGFLRPVFVVWKKME----------E-LGCSPDEFAYNALVDALIDK 362 (403)
Q Consensus 301 ~~~~~~~~~-~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~~~----------~-~~~~~~~~~~~~l~~~~~~~ 362 (403)
.++...+.. ++| +...|.-++-.|.+.|+++.|....-+-. + ..-..|+..|...+..|...
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence 433333322 222 45678889999999999999884321110 0 01245777787777777766
Q ss_pred C---------------CHHHHHHHHH
Q 041804 363 G---------------MLDMARKYDE 373 (403)
Q Consensus 363 g---------------~~~~a~~~~~ 373 (403)
+ +.+++.++|.
T Consensus 1415 ~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1415 KPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred ChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 6 6666666654
No 52
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.68 E-value=1.4e-13 Score=114.45 Aligned_cols=225 Identities=10% Similarity=-0.004 Sum_probs=185.7
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHhhcCCCcHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT----AHLVNEAMGTFNKLDEFGLKDEVSY 104 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 104 (403)
.++.++..+...+...|++++|...|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +..++
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHH
Confidence 35678888888999999999999999998883 356778888888998 999999999999988865 77888
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCc
Q 041804 105 CNLVDALCE----YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK----MSWWGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 105 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 176 (403)
..+...|.. .+++++|...+++.... .+..++..+...|.. .+++++|.+.|++..+.+ +
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~ 145 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDL---------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---D 145 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHc---------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---c
Confidence 888888888 99999999999887663 266778888888888 899999999999988875 5
Q ss_pred HHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCCHH
Q 041804 177 LHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV----SEGVDFAMRVYREMREMGCQPSVV 248 (403)
Q Consensus 177 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~ 248 (403)
...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +..
T Consensus 146 ~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~ 219 (273)
T 1ouv_A 146 GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGG 219 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHH
Confidence 6677788888887 889999999999888774 45677778888888 889999999999888864 366
Q ss_pred HHHHHHHHHHh----cCcHHHHHHHHHhchhcC
Q 041804 249 TCNTVIKLLCE----NGRVREAYAVLAEMPKKG 277 (403)
Q Consensus 249 ~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 277 (403)
.+..+...|.. .+++++|...|++..+.+
T Consensus 220 a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 220 GCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77778888888 888888988888877653
No 53
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.67 E-value=5.7e-15 Score=131.66 Aligned_cols=341 Identities=11% Similarity=0.001 Sum_probs=178.8
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCCh---hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEF---DLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTA 80 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (403)
+..++|++++|++.|+.... .+ ++.++..+...|...|+. ++|..+|++..+. +...+..+...+...
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~-~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAE-LG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HT---CCTGGGTCC---------------------------------CHHHHHHHHHTC
T ss_pred HHHhCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhC
Confidence 44567888999998888764 32 344555666667777777 8888888887752 555666666655554
Q ss_pred C-----ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHH---HHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 81 H-----LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIE---AQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 81 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
+ ++++|+.+|++..+.|.++ .+..|...|...+..++ +...+..... ..+......+...|
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~~~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~---------~g~~~a~~~Lg~~y 151 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGEGN--TLIPLAMLYLQYPHSFPNVNAQQQISQWQA---------AGYPEAGLAQVLLY 151 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHH---------HTCTTHHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHH---------CCCHHHHHHHHHHH
Confidence 4 6788888888888755443 66666666666554332 3333332222 12234455666666
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC---ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc----
Q 041804 153 FKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG---KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS---- 225 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 225 (403)
...+.++.+......+.+.-...+...+..|...|...| ++++|++.|+...+.| .++...+..+...|...
T Consensus 152 ~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~ 230 (452)
T 3e4b_A 152 RTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGT 230 (452)
T ss_dssp HHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSS
T ss_pred HcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCC
Confidence 666644444333222222111123336666777777777 6777777777777665 33444444555555443
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCcHHHHHHHHHhchhcCCCCChhhHHHHHH--hhC-----CH
Q 041804 226 EGVDFAMRVYREMREMGCQPSVVTCNTVIKL-L--CENGRVREAYAVLAEMPKKGCVPDVITYHCFFR--CLE-----KP 295 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~--~~~-----~~ 295 (403)
+++++|...|+... . -+...+..+... | ...+++++|...|++..+.| +...+..+-. ..+ +.
T Consensus 231 ~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~ 303 (452)
T 3e4b_A 231 PDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYYEGKWVPADA 303 (452)
T ss_dssp CCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 56777777777765 2 244455555554 3 34667777777777766654 2222222211 123 56
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh----cCCHHH
Q 041804 296 REILGLFDRMIESGIRPKMDTYVMLLRKFGR----WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALID----KGMLDM 367 (403)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 367 (403)
++|..+|++.. . -+......|...|.. ..++++|...|++..+.|. ......|...|.. ..+.++
T Consensus 304 ~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~ 376 (452)
T 3e4b_A 304 KAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLN 376 (452)
T ss_dssp HHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHH
T ss_pred HHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHH
Confidence 67777776665 2 244455555555544 3367777777777766542 2344445555543 346677
Q ss_pred HHHHHHHHHHcC
Q 041804 368 ARKYDEEMFAKG 379 (403)
Q Consensus 368 a~~~~~~m~~~~ 379 (403)
|..+++...+.|
T Consensus 377 A~~~~~~A~~~g 388 (452)
T 3e4b_A 377 AYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHCC
Confidence 777777666655
No 54
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.66 E-value=6e-13 Score=127.65 Aligned_cols=283 Identities=11% Similarity=0.091 Sum_probs=194.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
...+...+...|.+++|..+|++... ...+.+.++. ..+++++|.++.++. .++.+|..+..++..
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~~------~~~A~~VLie---~i~nldrAiE~Aerv-----n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFDV------NTSAVQVLIE---HIGNLDRAYEFAERC-----NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCC------HHHHHHHHHH---HHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHh
Confidence 34478889999999999999999642 2223333333 778999999999855 468999999999999
Q ss_pred cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCh
Q 041804 114 YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193 (403)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (403)
.|++++|...|.+. .+...|..++.++.+.|++++|.+++....+... +....+.++.+|++.+++
T Consensus 1118 ~G~~kEAIdsYiKA------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~--e~~Idt~LafaYAKl~rl 1183 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFALAKTNRL 1183 (1630)
T ss_pred CCCHHHHHHHHHhc------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcc--cccccHHHHHHHHhhcCH
Confidence 99999999999653 4566788899999999999999999998877653 333334588899999888
Q ss_pred hHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 194 WKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 194 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
++...+ .. .++...|..+...|...|+++.|..+|..+ ..|..+..+|.+.|++++|.+.+++.
T Consensus 1184 eele~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1184 AELEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred HHHHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 854433 22 345667777888889999999999999875 37888889999999999999888876
Q ss_pred hhcCCCCChhhHHHHHHhh---------------------------------CCHHHHHHHHHHHHHcCCCCchhhHHHH
Q 041804 274 PKKGCVPDVITYHCFFRCL---------------------------------EKPREILGLFDRMIESGIRPKMDTYVML 320 (403)
Q Consensus 274 ~~~~~~p~~~~~~~l~~~~---------------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l 320 (403)
. +..+|..+-.+| |.+++|+.+++...... +-....|+-+
T Consensus 1248 ~------n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 N------STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred C------CHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 3 334443332222 44555555554444322 1122334334
Q ss_pred HHHHHhc--CCcchHHHHHHHHHhcCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 041804 321 LRKFGRW--GFLRPVFVVWKKMEELGCSP------DEFAYNALVDALIDKGMLDMAR 369 (403)
Q Consensus 321 i~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~ 369 (403)
...+++. ++..++.+.|..-. +++| +...|.-++-.|.+.|+++.|.
T Consensus 1321 aiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 4443332 22223333322111 1222 4556777788888888888777
No 55
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.64 E-value=7.1e-13 Score=110.10 Aligned_cols=222 Identities=9% Similarity=0.030 Sum_probs=189.6
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCChhhH
Q 041804 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDVVAY 215 (403)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (403)
.+..++..+...|...|++++|.+.|++..+. -+..++..+...|.. .+++++|...|++..+.+ +...+
T Consensus 4 ~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 4 QDPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 35667888999999999999999999999884 256788889999999 999999999999999886 67788
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHhchhcCCCCChhhHHH
Q 041804 216 NTVIRAVGV----SEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCE----NGRVREAYAVLAEMPKKGCVPDVITYHC 287 (403)
Q Consensus 216 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 287 (403)
..+...|.. .+++++|...|+...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 151 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTI 151 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHH
Confidence 889999999 999999999999999874 77888999999999 999999999999998875 2233322
Q ss_pred H---HHh----hCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCHHHHHHHH
Q 041804 288 F---FRC----LEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGR----WGFLRPVFVVWKKMEELGCSPDEFAYNALV 356 (403)
Q Consensus 288 l---~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 356 (403)
+ ... .++.++|...+++..+.+ +...+..+...|.. .+++++|.+.+++..+.+ +...+..+.
T Consensus 152 lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~ 225 (273)
T 1ouv_A 152 LGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLG 225 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHH
Confidence 2 222 467899999999998874 45778888889999 999999999999998864 377888889
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHcC
Q 041804 357 DALID----KGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 357 ~~~~~----~g~~~~a~~~~~~m~~~~ 379 (403)
..|.+ .+++++|.+++++..+.|
T Consensus 226 ~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 226 AMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 99999 999999999999999876
No 56
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.63 E-value=2e-13 Score=121.75 Aligned_cols=340 Identities=12% Similarity=0.039 Sum_probs=220.9
Q ss_pred CcccccccccH---HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccC-----ChhHHHHHHHHhhhCCCCCCCHHHHHH
Q 041804 1 RETLSCYANDW---KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFF-----EFDLSWNLIHRMKDNPSSIPNHATFRI 72 (403)
Q Consensus 1 L~~l~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~ 72 (403)
|+.++...|++ ++|++.|+.... . ++..+..+...+...+ ++++|..+|++..+.+ .++ ++..
T Consensus 41 Lg~~y~~~g~~~d~~~A~~~~~~A~~-~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g--~~~--A~~~ 111 (452)
T 3e4b_A 41 LADIQVGTRDPAQIKQAEATYRAAAD-T----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG--EGN--TLIP 111 (452)
T ss_dssp CC---------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT--CSS--CHHH
T ss_pred HHHHHHccCCCCCHHHHHHHHHHHHh-C----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC--CHH--HHHH
Confidence 45566677888 899999998874 1 6677777777565555 7899999999999876 233 7777
Q ss_pred HHHHHHhcCChHH---HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH----HHHHHHHhcccccccccccccCcchHHH
Q 041804 73 MFKRYVTAHLVNE---AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV----IEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 73 l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
|...|...+..+. +.+.+......| ++..+..+...|...+.+ +.+..++..... .+..++
T Consensus 112 Lg~~y~~~~~~~~~~~a~~~~~~a~~~g--~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~----------~~~~a~ 179 (452)
T 3e4b_A 112 LAMLYLQYPHSFPNVNAQQQISQWQAAG--YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN----------TTDICY 179 (452)
T ss_dssp HHHHHHHCGGGCTTCCHHHHHHHHHHHT--CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT----------TCTTHH
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc----------CCHHHH
Confidence 8888887665444 444454444433 566777888888887744 444444444333 223378
Q ss_pred HHHHHHHHhcC---ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc----CChhHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 146 NMILRGWFKMS---WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS----GKPWKAVKLYKEMKKKGIKMDVVAYNTV 218 (403)
Q Consensus 146 ~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (403)
..+...|.+.| +.++|.+.|++..+.|.. +...+..+...|... +++++|+.+|+... .| +...+..+
T Consensus 180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~L 254 (452)
T 3e4b_A 180 VELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSL 254 (452)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHH
T ss_pred HHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHH
Confidence 88999999999 999999999999998866 666556777777554 68999999999987 43 55566666
Q ss_pred HHH-H--hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----cHHHHHHHHHhchhcCCCCChhhHHHHHH
Q 041804 219 IRA-V--GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENG-----RVREAYAVLAEMPKKGCVPDVITYHCFFR 290 (403)
Q Consensus 219 l~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 290 (403)
... + ...+++++|...|++..+.| +...+..|...|. .| ++++|...|++.. .| +......+-.
T Consensus 255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~ 326 (452)
T 3e4b_A 255 AQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQ 326 (452)
T ss_dssp HHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHH
Confidence 665 3 56899999999999999876 6777788888887 55 9999999999988 43 3333332222
Q ss_pred hh--C-----CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 041804 291 CL--E-----KPREILGLFDRMIESGIRPKMDTYVMLLRKFGR----WGFLRPVFVVWKKMEELGCSPDEFAYNALVDAL 359 (403)
Q Consensus 291 ~~--~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (403)
.+ + +.++|..+|++..+.|. ......|...|.. ..++.+|...|+...+.|. ++.......+...
T Consensus 327 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~ 402 (452)
T 3e4b_A 327 IYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAP 402 (452)
T ss_dssp HHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTT
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHh
Confidence 22 2 68899999999988764 3455556666653 4689999999999998773 3333332223333
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 041804 360 IDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 360 ~~~g~~~~a~~~~~~m~~~ 378 (403)
...++..+|..+.++..+.
T Consensus 403 ~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 403 LTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 3345667788887776653
No 57
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.63 E-value=4.9e-14 Score=124.17 Aligned_cols=309 Identities=13% Similarity=-0.012 Sum_probs=217.8
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC-C-
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN--HATFRIMFKRYVTAHLVNEAMGTFNKLDEF----GL-K- 99 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~- 99 (403)
......+......+...|++++|...|++..+..+..|. ..++..+...+...|++++|+..|++.... +. +
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345667778889999999999999999999886511111 357888999999999999999999987554 21 2
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC--------------------hh
Q 041804 100 DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW--------------------WG 159 (403)
Q Consensus 100 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~ 159 (403)
...++..+...+...|++++|...+++........+ .......++..+...|...|+ ++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 566888899999999999999999887765321000 111224578888899999999 99
Q ss_pred HHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC----hhhHHHHHHHHhhcCCHH
Q 041804 160 KCREFWEEMDKR----GVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI-KMD----VVAYNTVIRAVGVSEGVD 229 (403)
Q Consensus 160 ~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~ 229 (403)
+|.+.+++..+. +.. ....++..+...|...|++++|...+++..+... .++ ..++..+...+...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 999888876542 111 1235678888889999999999999988765410 111 236777888888999999
Q ss_pred HHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHH
Q 041804 230 FAMRVYREMREMGCQ-PS----VVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDR 304 (403)
Q Consensus 230 ~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~ 304 (403)
+|...+++..+.... ++ ..++..+...|...|++++|...+++..+.. .
T Consensus 245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-------------------------~- 298 (406)
T 3sf4_A 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA-------------------------Q- 298 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------H-
T ss_pred HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-------------------------H-
Confidence 999999887754111 11 4567778888888899988888888765320 0
Q ss_pred HHHcCCC-CchhhHHHHHHHHHhcCCcchHHHHHHHHHhc----CCC-CCHHHHHHHHHHHHhcCCH
Q 041804 305 MIESGIR-PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL----GCS-PDEFAYNALVDALIDKGML 365 (403)
Q Consensus 305 ~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~ 365 (403)
..+.. ....++..+...|...|++++|.+.+++..+. +.. ....++..+...+...|+.
T Consensus 299 --~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 299 --ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp --HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred --hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 00000 11346677778888888999988888887542 211 1245566677777777765
No 58
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.62 E-value=8.9e-14 Score=108.17 Aligned_cols=167 Identities=18% Similarity=0.070 Sum_probs=97.6
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
++.+|..+..++.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+..+.......+.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHH
Confidence 34556666666666666666666666665543 2345556666666666666666666666666655555555666666
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
.+...++++.+...+.+... ..+.+..++..+...|.+.|++++|.+.|++..+..+. +..+|..+..+|.+
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~-------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA-------LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-------hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHH
Confidence 66666666666666555544 22344555555556666666666666666665555443 45555556666666
Q ss_pred cCChhHHHHHHHHHHHc
Q 041804 190 SGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~ 206 (403)
.|++++|++.|++..+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 66666666666655543
No 59
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.62 E-value=1.5e-13 Score=121.03 Aligned_cols=286 Identities=12% Similarity=0.012 Sum_probs=209.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccC
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD----EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEM 139 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 139 (403)
.+....+......+...|++++|+..|++..+..+.+ ..++..+...+...|++++|...+++........+ ..+
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~ 84 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQL 84 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-ccH
Confidence 4566778888999999999999999999999987765 35788899999999999999999887654311000 123
Q ss_pred cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCcHHHHHHHHHHHHHcCC--------------------hh
Q 041804 140 NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGV-----VKDLHSYSIYMDIMCKSGK--------------------PW 194 (403)
Q Consensus 140 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~ 194 (403)
....++..+...|...|++++|...+++..+... .....++..+...|...|+ ++
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 164 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ 164 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence 3456788889999999999999999988765321 1114478888888999999 88
Q ss_pred HHHHHHHHHHHc----CCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCcHH
Q 041804 195 KAVKLYKEMKKK----GIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ-PS----VVTCNTVIKLLCENGRVR 264 (403)
Q Consensus 195 ~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~ 264 (403)
+|...+++.... +..| ...++..+...+...|+++.|...+++..+.... ++ ..++..+...|...|+++
T Consensus 165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 244 (406)
T 3sf4_A 165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 244 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence 888888876543 1111 1346777778888889999999888887654111 11 236777788888888888
Q ss_pred HHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 265 EAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIR-PKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 265 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
+|...+++..+.. . ..+.. ....++..+...+...|++++|...+++..+.
T Consensus 245 ~A~~~~~~al~~~-------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 245 TASEYYKKTLLLA-------------------------R---QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHHHHHHHHHHHH-------------------------H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------------------------H---hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 8888887765320 0 00101 12456778888999999999999999988653
Q ss_pred CC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 344 GC-SPD----EFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 344 ~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.- .++ ..++..+...|.+.|++++|...+++..+.
T Consensus 297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 10 112 567888899999999999999999987764
No 60
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=6.6e-13 Score=112.28 Aligned_cols=218 Identities=10% Similarity=-0.064 Sum_probs=154.4
Q ss_pred hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-------cCCh-------HHHHHHHHHHhh-cCCCcHHHHHHHHHHHH
Q 041804 48 DLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT-------AHLV-------NEAMGTFNKLDE-FGLKDEVSYCNLVDALC 112 (403)
Q Consensus 48 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~~~~-~~~~~~~~~~~l~~~~~ 112 (403)
++|..+|++..... +.+...|..++..+.. .|++ ++|..+|++..+ ..+.+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 57777888777754 3456677777766653 4775 788888888887 46557778888888888
Q ss_pred hcCCHHHHHHHHhcccccccccccccCcchH-HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH-Hc
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGLVEMNKTK-IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC-KS 190 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 190 (403)
..|++++|..+|++.... .+.+.. +|..++..+.+.|++++|..+|++..+.+.. +...|........ ..
T Consensus 111 ~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~ 182 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI-------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 182 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS-------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTS
T ss_pred hcCCHHHHHHHHHHHHhc-------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHc
Confidence 888888888888877763 122333 6777888888888888888888888776543 4444544333322 25
Q ss_pred CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCcHHHHH
Q 041804 191 GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG-CQP--SVVTCNTVIKLLCENGRVREAY 267 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~ 267 (403)
|++++|.++|+...+.. +-+...|..++..+.+.|+++.|..+|+...+.. .+| ....|..++..+.+.|+.+.|.
T Consensus 183 ~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~ 261 (308)
T 2ond_A 183 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASIL 261 (308)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888877662 3356677777777888888888888888888752 343 3567777777777888888888
Q ss_pred HHHHhchhc
Q 041804 268 AVLAEMPKK 276 (403)
Q Consensus 268 ~~~~~~~~~ 276 (403)
.+++++.+.
T Consensus 262 ~~~~~a~~~ 270 (308)
T 2ond_A 262 KVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888877654
No 61
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.62 E-value=2.7e-13 Score=114.72 Aligned_cols=219 Identities=10% Similarity=0.012 Sum_probs=181.9
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHH-------ccCCh-------hHHHHHHHHhhhC-CCCCCCHHHHHHHHHH
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILG-------KFFEF-------DLSWNLIHRMKDN-PSSIPNHATFRIMFKR 76 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~ 76 (403)
++|+.+|+.+... .+.++..|..++..+. +.|++ ++|..+|++..+. . +.+...|..++..
T Consensus 33 ~~a~~~~~~al~~--~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~ 108 (308)
T 2ond_A 33 KRVMFAYEQCLLV--LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADY 108 (308)
T ss_dssp HHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHH
Confidence 6888999988752 3556888888888876 35886 9999999999983 4 3466789999999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHH-h
Q 041804 77 YVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWF-K 154 (403)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~ 154 (403)
+.+.|++++|..+|++..+..+.+.. +|..++..+.+.|++++|..+|++.... .+.+...|........ .
T Consensus 109 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~~a~~~~~~ 181 (308)
T 2ond_A 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-------ARTRHHVYVTAALMEYYC 181 (308)
T ss_dssp HHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-------TTCCTHHHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998776665 8999999999999999999999998874 2344555554444432 3
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHhhcCCHHHH
Q 041804 155 MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG-IKM--DVVAYNTVIRAVGVSEGVDFA 231 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a 231 (403)
.|++++|.++|++..+..+. +...|..++..+.+.|++++|..+|++..... ++| ....|..++....+.|+.+.|
T Consensus 182 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a 260 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI 260 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 69999999999999887555 78899999999999999999999999999863 455 356888889999999999999
Q ss_pred HHHHHHHHHcC
Q 041804 232 MRVYREMREMG 242 (403)
Q Consensus 232 ~~~~~~~~~~~ 242 (403)
..+++.+.+..
T Consensus 261 ~~~~~~a~~~~ 271 (308)
T 2ond_A 261 LKVEKRRFTAF 271 (308)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHc
Confidence 99999998864
No 62
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=4.2e-14 Score=124.93 Aligned_cols=282 Identities=13% Similarity=0.018 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH----HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE----VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
..+..+...+...|++++|+..|++..+..+.+. .++..+..++...|++++|...+++........+ ..+....
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMN-DRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc-CchHHHH
Confidence 3455667788889999999999999888876654 5778888888899999999988887654310000 1244567
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCcHHHHHHHHHHHHHcCC-----------------hhHHHHHHH
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRG-----VVKDLHSYSIYMDIMCKSGK-----------------PWKAVKLYK 201 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 201 (403)
++..+...|...|++++|.+.+++..+.. ......++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 78889999999999999999998876531 11234578888889999999 888888888
Q ss_pred HHHHc----CCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCcHHHHHHHHH
Q 041804 202 EMKKK----GIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ-PS----VVTCNTVIKLLCENGRVREAYAVLA 271 (403)
Q Consensus 202 ~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~~~~a~~~~~ 271 (403)
+..+. +..+ ...++..+...+...|++++|...+++..+.... ++ ...+..+...|...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 76543 1111 2346777788888899999999998887754211 11 2367778888888888888888887
Q ss_pred hchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc----CC-
Q 041804 272 EMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGI-RPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL----GC- 345 (403)
Q Consensus 272 ~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~- 345 (403)
+..+.. . ..+. .....++..+...+...|++++|...+++..+. +.
T Consensus 288 ~al~~~-------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 339 (411)
T 4a1s_A 288 RTLALA-------------------------V---ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339 (411)
T ss_dssp HHHHHH-------------------------H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHH-------------------------H---HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCh
Confidence 765420 0 0000 012346777788888899999999988887653 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 346 SPDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 346 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.....++..+..+|.+.|++++|..++++..+.
T Consensus 340 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 112446777888889999999999999888774
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=7.7e-14 Score=123.24 Aligned_cols=283 Identities=11% Similarity=-0.035 Sum_probs=212.5
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhc------CCCc
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH----ATFRIMFKRYVTAHLVNEAMGTFNKLDEF------GLKD 100 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~ 100 (403)
...+..+...+...|++++|+..|++..+.. +.+. .+|..+...|...|++++|+..|++..+. .+..
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 125 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGE 125 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHH
Confidence 3455667788899999999999999998865 2233 47888999999999999999999988765 1226
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC-----------------hhHHHH
Q 041804 101 EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW-----------------WGKCRE 163 (403)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~ 163 (403)
..++..+...|...|++++|...+++........+ ..+....++..+...|...|+ +++|.+
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~ 204 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVE 204 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHH
Confidence 67889999999999999999999988765321000 123445678899999999999 999999
Q ss_pred HHHHHHhC----CC-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhhcCCHHHHHH
Q 041804 164 FWEEMDKR----GV-VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK-MD----VVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 164 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
.+++..+. +. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|..
T Consensus 205 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (411)
T 4a1s_A 205 FYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAE 284 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 98876542 11 113357888899999999999999999998764111 11 2377888899999999999999
Q ss_pred HHHHHHHcCCC-----CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHc
Q 041804 234 VYREMREMGCQ-----PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIES 308 (403)
Q Consensus 234 ~~~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~ 308 (403)
.+++..+.... ....++..+...|...|++++|...+++..+. .....
T Consensus 285 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~~-- 337 (411)
T 4a1s_A 285 HYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI-------------------------AQELG-- 337 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHHT--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------------HHHCC--
Confidence 99988764211 12467788889999999999999999876542 01000
Q ss_pred CCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 309 GIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
.......++..+...|...|++++|.+.+++..+.
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 00112346777888889999999999999888764
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=2.1e-13 Score=105.97 Aligned_cols=168 Identities=12% Similarity=0.016 Sum_probs=133.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.+...|..+...|...|++++|++.|++..+..+.+..++..+..++...|++++|...+..... ..+.+..+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~ 75 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV-------LDTTSAEA 75 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCCCCHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-------cCchhHHH
Confidence 45677888888888899999999999998888877888888888888888888888888887766 33556667
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV 224 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 224 (403)
+..+...+...++++.+.+.+.+.....+. +...+..+..+|.+.|++++|++.|++..+.. +.+..++..+..+|.+
T Consensus 76 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~ 153 (184)
T 3vtx_A 76 YYILGSANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEG 153 (184)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHH
Confidence 777778888888888888888888776555 67777888888888888888888888877763 3456677777788888
Q ss_pred cCCHHHHHHHHHHHHHc
Q 041804 225 SEGVDFAMRVYREMREM 241 (403)
Q Consensus 225 ~~~~~~a~~~~~~~~~~ 241 (403)
.|++++|...|++..+.
T Consensus 154 ~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 154 KGLRDEAVKYFKKALEK 170 (184)
T ss_dssp TTCHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 88888888888877764
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=9.6e-15 Score=125.09 Aligned_cols=273 Identities=10% Similarity=0.014 Sum_probs=200.0
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCC--HHhHHHHHHHHHccCChhHHHHHHHHhhhC----CCCCCCHHHHHHHHHH
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHT--TDTYNSVIDILGKFFEFDLSWNLIHRMKDN----PSSIPNHATFRIMFKR 76 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~ 76 (403)
..+...|++++|++.|+.+.......+. ...+..+...+...|++++|...+++.... +..+....++..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 92 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNT 92 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3456789999999999998863211111 467889999999999999999999886543 1011225578889999
Q ss_pred HHhcCChHHHHHHHHHHhhcCCC------cHHHHHHHHHHHHhcCC--------------------HHHHHHHHhccccc
Q 041804 77 YVTAHLVNEAMGTFNKLDEFGLK------DEVSYCNLVDALCEYKH--------------------VIEAQELCFGENKN 130 (403)
Q Consensus 77 ~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~ 130 (403)
+...|++++|+..+++..+.... ...++..+...+...|+ +++|...+.+....
T Consensus 93 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~ 172 (338)
T 3ro2_A 93 LKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL 172 (338)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987664322 24478889999999999 99998888775542
Q ss_pred ccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-----CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 131 VGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGV-----VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
....+ ..+....++..+...+...|++++|.+.+++..+... .....++..+...+...|++++|...+++...
T Consensus 173 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 251 (338)
T 3ro2_A 173 VTALG-DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL 251 (338)
T ss_dssp HHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhcC-CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 10000 1123345788888999999999999999988764311 11234788888899999999999999988765
Q ss_pred cCCC-CC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 206 KGIK-MD----VVAYNTVIRAVGVSEGVDFAMRVYREMREMGC-----QPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 206 ~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
.... .+ ..++..+...+...|++++|...++...+... .....++..+...|...|++++|...+++..+
T Consensus 252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4111 11 45677788888999999999999988765411 11144677788899999999999999988765
Q ss_pred c
Q 041804 276 K 276 (403)
Q Consensus 276 ~ 276 (403)
.
T Consensus 332 ~ 332 (338)
T 3ro2_A 332 I 332 (338)
T ss_dssp C
T ss_pred H
Confidence 3
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=7.3e-14 Score=119.55 Aligned_cols=281 Identities=12% Similarity=0.007 Sum_probs=185.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc----HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD----EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.+......+...|++++|+..|+++.+..+.+ ...+..+...+...|++++|...+++........+ ..+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIG-DQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-ccHHHHHH
Confidence 34445556666667777777776666665443 34566666666677777777766665443210000 11233556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-Cc----HHHHHHHHHHHHHcCC--------------------hhHHHHH
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVV-KD----LHSYSIYMDIMCKSGK--------------------PWKAVKL 199 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~a~~~ 199 (403)
+..+...|...|++++|.+.+++..+.... ++ ..++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 788888888999999999888876543111 11 3477788888888888 8888888
Q ss_pred HHHHHHc----CCCC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCcHHHHHHH
Q 041804 200 YKEMKKK----GIKM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ-P----SVVTCNTVIKLLCENGRVREAYAV 269 (403)
Q Consensus 200 ~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~ 269 (403)
+++.... +..+ ...++..+...+...|+++.|...++...+.... + ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 8776543 1111 2336677777888888888888888877653110 1 123667777888888888888888
Q ss_pred HHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc----C
Q 041804 270 LAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGI-RPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL----G 344 (403)
Q Consensus 270 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~ 344 (403)
+++..+.. . ..+. .....++..+...+...|++++|...+++..+. +
T Consensus 246 ~~~al~~~-------------------------~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 246 YKKTLLLA-------------------------R---QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp HHHHHHHH-------------------------H---HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHH-------------------------H---hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 87755320 0 0000 012446777888899999999999999888653 1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 345 CS-PDEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 345 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
-. ....++..+...|.+.|++++|...+++..+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 11 12447778889999999999999999998874
No 67
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.60 E-value=1.5e-13 Score=123.35 Aligned_cols=216 Identities=10% Similarity=-0.035 Sum_probs=189.4
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh-HHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV-NEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELC 124 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 124 (403)
.+++++..++...... +.+...+..+...+...|++ ++|++.|++..+..+.+..+|..+..+|...|++++|...|
T Consensus 83 ~~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3667777787776654 35788999999999999999 99999999999999889999999999999999999999999
Q ss_pred hcccccccccccccCcchHHHHHHHHHHHhc---------CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-----
Q 041804 125 FGENKNVGFSGLVEMNKTKIYNMILRGWFKM---------SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS----- 190 (403)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 190 (403)
++.... .|+..++..+...+... |++++|.+.|++..+..+. +...|..+..+|...
T Consensus 161 ~~al~~--------~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~ 231 (474)
T 4abn_A 161 SGALTH--------CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTG 231 (474)
T ss_dssp HHHHTT--------CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhh--------CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhc
Confidence 998864 35578899999999999 9999999999999988766 788999999999998
Q ss_pred ---CChhHHHHHHHHHHHcCCC---CChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHH
Q 041804 191 ---GKPWKAVKLYKEMKKKGIK---MDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVR 264 (403)
Q Consensus 191 ---~~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 264 (403)
|++++|+..|++..+.. + -+...+..+..+|...|++++|...|++..+.... +...+..+...+...|+++
T Consensus 232 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~a~~~l~~~~~~lg~~~ 309 (474)
T 4abn_A 232 QNPKISQQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA-WPEPQQREQQLLEFLSRLT 309 (474)
T ss_dssp CCHHHHHHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHH
Confidence 99999999999999873 2 47788999999999999999999999999987533 5677888899999999999
Q ss_pred HHHHHHHhch
Q 041804 265 EAYAVLAEMP 274 (403)
Q Consensus 265 ~a~~~~~~~~ 274 (403)
+|...+..+.
T Consensus 310 eAi~~~~~~~ 319 (474)
T 4abn_A 310 SLLESKGKTK 319 (474)
T ss_dssp HHHHHTTTCC
T ss_pred HHHHHhcccc
Confidence 9998776653
No 68
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.58 E-value=9.8e-14 Score=124.46 Aligned_cols=217 Identities=8% Similarity=-0.021 Sum_probs=185.6
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCCh-hHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEF-DLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
+++++++..++.... ..+.+...+..+..++...|++ ++|+..|++..+.. +.+..+|..+..+|...|++++|+
T Consensus 82 ~~~~~al~~l~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 82 EEMEKTLQQMEEVLG--SAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHHHT--TCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhc--cCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 456777777776653 2345788999999999999999 99999999998875 345889999999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhc---------CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc---
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCEY---------KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM--- 155 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 155 (403)
+.|++..+..+. ..++..+..++... |++++|...+++... ..+.+...|..+..+|...
T Consensus 158 ~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~~~~ 229 (474)
T 4abn_A 158 TCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ-------MDVLDGRSWYILGNAYLSLYFN 229 (474)
T ss_dssp HHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHHHHh
Confidence 999999998865 68999999999999 999999999999887 4466788899999999998
Q ss_pred -----CChhHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCH
Q 041804 156 -----SWWGKCREFWEEMDKRGVV--KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGV 228 (403)
Q Consensus 156 -----~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 228 (403)
|++++|.+.|++..+..+. -+...|..+..+|...|++++|.+.|++..+.. +.+...+..+..++...|++
T Consensus 230 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~ 308 (474)
T 4abn_A 230 TGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRL 308 (474)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred hccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999987541 278899999999999999999999999998874 34566788888888888988
Q ss_pred HHHHHHHHHH
Q 041804 229 DFAMRVYREM 238 (403)
Q Consensus 229 ~~a~~~~~~~ 238 (403)
++|...+..+
T Consensus 309 ~eAi~~~~~~ 318 (474)
T 4abn_A 309 TSLLESKGKT 318 (474)
T ss_dssp HHHHHHTTTC
T ss_pred HHHHHHhccc
Confidence 8888755433
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.57 E-value=4.5e-13 Score=117.13 Aligned_cols=301 Identities=7% Similarity=-0.048 Sum_probs=184.4
Q ss_pred ccccccHHHHHHhhhhhcccC-CC--cCCHHhHHHHHHHH--HccCChhHHH-----------HHHHHhhhCCCCCCCHH
Q 041804 5 SCYANDWKRALEFFNWVETDC-HF--THTTDTYNSVIDIL--GKFFEFDLSW-----------NLIHRMKDNPSSIPNHA 68 (403)
Q Consensus 5 ~~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~~li~~~--~~~~~~~~a~-----------~~~~~~~~~~~~~~~~~ 68 (403)
..+++++++|..+++.+.... .. .++...|..++..- .-.+.++.+. +.++.+.... ++..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~---~~~~ 98 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ---ARLT 98 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT---HHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC---CCch
Confidence 346789999999998886522 11 23334444444332 2234444444 6777765532 2222
Q ss_pred H------HHHHHHHHHhcCChHHHHHHHHHHhhc----CCC--cHHHHHHHHHHHHhcCCHHHHHHHHhccccccccccc
Q 041804 69 T------FRIMFKRYVTAHLVNEAMGTFNKLDEF----GLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGL 136 (403)
Q Consensus 69 ~------~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (403)
. +......+...|++++|+..|++..+. +.+ ...++..+..++...|++++|...+.+........+.
T Consensus 99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 178 (383)
T 3ulq_A 99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence 2 223667788999999999999998775 211 5578899999999999999999998876653211100
Q ss_pred ccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-----CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----C
Q 041804 137 VEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV-----KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK----G 207 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~ 207 (403)
..+....+++.+...|...|++++|.+.|++..+.... ....++..+..+|...|++++|.+.+++..+. +
T Consensus 179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~ 258 (383)
T 3ulq_A 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN 258 (383)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence 02233456788888888888888888888776543111 11246777777888888888888888777662 2
Q ss_pred C-CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHhcCc---HHHHHHHHHhchhcCCC
Q 041804 208 I-KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG----CQPSVVTCNTVIKLLCENGR---VREAYAVLAEMPKKGCV 279 (403)
Q Consensus 208 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~ 279 (403)
. +....++..+...+.+.|++++|...+++..+.. -+.....+..+...|...|+ .++|..++++...
T Consensus 259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~---- 334 (383)
T 3ulq_A 259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML---- 334 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC----
T ss_pred cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC----
Confidence 2 2234466677777777777777777777765431 11112223445555555555 3444444433210
Q ss_pred CChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 041804 280 PDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 280 p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 342 (403)
.......+..+...|...|++++|.+.+++..+
T Consensus 335 ------------------------------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 ------------------------------YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp ------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------------------------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 001223455666677777777777777776654
No 70
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.56 E-value=5.1e-14 Score=119.24 Aligned_cols=246 Identities=11% Similarity=0.030 Sum_probs=174.5
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhC-------CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDN-------PSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEF---- 96 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 96 (403)
+.+..++..+...+...|++++|..+++++.+. . .+....++..+...|...|++++|+..|++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999999998872 1 1234567889999999999999999999998765
Q ss_pred --C-CC-cHHHHHHHHHHHHhcCCHHHHHHHHhccccccccc-ccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 97 --G-LK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFS-GLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 97 --~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
+ .+ ...++..+...+...|++++|...+++........ +...+....++..+...+...|++++|.+++++..+.
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 23 67889999999999999999999998877531000 0022445677889999999999999999999998764
Q ss_pred ------CCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCChhhH-------HHHHHHHhhcCCHHH
Q 041804 172 ------GVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-------GIKMDVVAY-------NTVIRAVGVSEGVDF 230 (403)
Q Consensus 172 ------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~-------~~ll~~~~~~~~~~~ 230 (403)
+..| ...++..+..+|...|++++|...++++.+. ...+..... ..+...+...+.+..
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGE 262 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCC
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 2122 3467888999999999999999999998763 112222211 222222333445555
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 231 AMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 231 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
+...+....... +....++..+...|.+.|++++|...|++..+
T Consensus 263 a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 263 YGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 556666655432 23566788899999999999999999998764
No 71
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.55 E-value=1.2e-12 Score=114.51 Aligned_cols=307 Identities=7% Similarity=-0.035 Sum_probs=207.5
Q ss_pred HHHccCChhHHHHHHHHhhhCCC-C--CCCHHHHHHHHHH--HHhcCChHHHH-----------HHHHHHhhcCCC-c--
Q 041804 40 ILGKFFEFDLSWNLIHRMKDNPS-S--IPNHATFRIMFKR--YVTAHLVNEAM-----------GTFNKLDEFGLK-D-- 100 (403)
Q Consensus 40 ~~~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~~l~~~--~~~~~~~~~a~-----------~~~~~~~~~~~~-~-- 100 (403)
.+.+.+++++|..+++++.+.-. . .++...|-.++.. ....++++.+. +.++.+.....+ +
T Consensus 21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 35578999999999998866421 1 1333333443332 22334444444 677766553322 1
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----
Q 041804 101 --EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV---- 174 (403)
Q Consensus 101 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---- 174 (403)
...+......+...|++++|...+++........+ .......++..+...|...|+++.|...+++..+....
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVK-DRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 11223366777889999999999988765321000 11124577889999999999999999999887653111
Q ss_pred --CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc----CC
Q 041804 175 --KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK-MD----VVAYNTVIRAVGVSEGVDFAMRVYREMREM----GC 243 (403)
Q Consensus 175 --~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~ 243 (403)
....+++.+..+|...|++++|...|++..+.... ++ ..++..+...|...|++++|...+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 12457888889999999999999999887754111 11 236778888899999999999999988763 22
Q ss_pred -CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 041804 244 -QPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLR 322 (403)
Q Consensus 244 -~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 322 (403)
+....++..+...|.+.|++++|...+++..+. ... .+.......+..+..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~~---~~~~~~~~~~~~l~~ 311 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY-------------------------SQK---AGDVIYLSEFEFLKS 311 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHH---HTCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------------HHH---cCCHHHHHHHHHHHH
Confidence 334567888889999999999999998876542 000 011111223566777
Q ss_pred HHHhcCC---cchHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 323 KFGRWGF---LRPVFVVWKKMEELGCSP-DEFAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 323 ~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
.+...|+ +++|..++++. +..| ....+..+...|.+.|++++|...+++..+.
T Consensus 312 ~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 312 LYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 7888888 67777777665 2223 3456778899999999999999999998763
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.52 E-value=2.1e-12 Score=100.22 Aligned_cols=166 Identities=8% Similarity=-0.091 Sum_probs=107.4
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 3455666667777777777777777766653 34566667777777777777777777777776665566666667777
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
+...|++++|...+++... ..+.+..++..+...+...|++++|.+.+++..+.... +...+..+..++...
T Consensus 86 ~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~ 157 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAE-------ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN-EGKVHRAIAFSYEQM 157 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHh-------cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHc
Confidence 7777777777776666554 22344555666666666666666666666666655433 455666666666666
Q ss_pred CChhHHHHHHHHHHHc
Q 041804 191 GKPWKAVKLYKEMKKK 206 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~ 206 (403)
|++++|...++...+.
T Consensus 158 ~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 158 GRHEEALPHFKKANEL 173 (186)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6666666666665543
No 73
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.50 E-value=1.4e-12 Score=121.78 Aligned_cols=166 Identities=10% Similarity=-0.051 Sum_probs=152.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
+..+|+.+..++.+.|++++|+..|++..+.. +-+..+|+.+..+|.+.|++++|+..|++..+..+.+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 47899999999999999999999999999865 3457899999999999999999999999999999889999999999
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
++...|++++|.+.|++..+ ..+.+..+|+.+...|.+.|++++|++.|++..+..+. +...+..+..++..
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~-------l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQ-------INPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHh
Confidence 99999999999999999887 44667889999999999999999999999999998766 78899999999999
Q ss_pred cCChhHHHHHHHHHHH
Q 041804 190 SGKPWKAVKLYKEMKK 205 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~ 205 (403)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999999888765
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=6.5e-13 Score=112.43 Aligned_cols=240 Identities=9% Similarity=-0.019 Sum_probs=167.0
Q ss_pred ccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-------CCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc---
Q 041804 137 VEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR-------GVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--- 206 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 206 (403)
..+.+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++....
T Consensus 22 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 101 (311)
T 3nf1_A 22 EIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREK 101 (311)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 44566788999999999999999999999998773 23335677888999999999999999999998765
Q ss_pred ---CC-CCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 207 ---GI-KMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM------GC-QPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 207 ---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
+- +....++..+...|...|++++|...++++.+. +. ......+..+...|...|++++|..++++..+
T Consensus 102 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 181 (311)
T 3nf1_A 102 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE 181 (311)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 22 223557888899999999999999999998865 21 22345688889999999999999999998865
Q ss_pred c------CCCCC-hhhHHHHHH---hhCCHHHHHHHHHHHHHc-------CCCCch-------hhHHHHHHHHHhcCCcc
Q 041804 276 K------GCVPD-VITYHCFFR---CLEKPREILGLFDRMIES-------GIRPKM-------DTYVMLLRKFGRWGFLR 331 (403)
Q Consensus 276 ~------~~~p~-~~~~~~l~~---~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~li~~~~~~g~~~ 331 (403)
. +..|. ...+..+.. ..++.++|...++++.+. ...+.. ..+..+...+...+.+.
T Consensus 182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (311)
T 3nf1_A 182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG 261 (311)
T ss_dssp HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3 21232 223333333 338899999999888753 111221 12223333445566777
Q ss_pred hHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 332 PVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 332 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
++...++...... +.+..++..+..+|.+.|++++|.+++++..+
T Consensus 262 ~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 262 EYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp CCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777776542 34567888999999999999999999998876
No 75
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.49 E-value=9e-10 Score=101.77 Aligned_cols=362 Identities=8% Similarity=0.021 Sum_probs=237.0
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCC---hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFE---FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV 83 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 83 (403)
..++++.+..+|+.+... ++.+...|...+..-.+.++ ++.+..+|++.......+|+...|..-+....+.++.
T Consensus 78 ~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~ 155 (679)
T 4e6h_A 78 SLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDI 155 (679)
T ss_dssp HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCS
T ss_pred hcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhccc
Confidence 346778888888888743 55667788888888888888 8888888888887642247888887777766555543
Q ss_pred --------HHHHHHHHHHhh-cCC---CcHHHHHHHHHHHHh---------cCCHHHHHHHHhcccccccccccccCcch
Q 041804 84 --------NEAMGTFNKLDE-FGL---KDEVSYCNLVDALCE---------YKHVIEAQELCFGENKNVGFSGLVEMNKT 142 (403)
Q Consensus 84 --------~~a~~~~~~~~~-~~~---~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 142 (403)
+.+.++|+.... .|. .+...|...+..... .++.+.+.++|++..... ...-.
T Consensus 156 ~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP------~~~~~ 229 (679)
T 4e6h_A 156 ITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP------MDCLE 229 (679)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC------CSSHH
T ss_pred ccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc------cHHHH
Confidence 334467766543 233 255677777665432 334566777776665421 00001
Q ss_pred -------------------------------------------------------------------------HHHHHHH
Q 041804 143 -------------------------------------------------------------------------KIYNMIL 149 (403)
Q Consensus 143 -------------------------------------------------------------------------~~~~~l~ 149 (403)
..|...+
T Consensus 230 ~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi 309 (679)
T 4e6h_A 230 SMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWI 309 (679)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHH
Confidence 1111111
Q ss_pred HHHHhcC-------ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHH-HHHHHHHHcCCCCChhhHHHHHHH
Q 041804 150 RGWFKMS-------WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAV-KLYKEMKKKGIKMDVVAYNTVIRA 221 (403)
Q Consensus 150 ~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~ll~~ 221 (403)
..--..+ ..+.+..+|++.....+. +...|...+..+...|+.++|. ++|++.... .+.+...|-..+..
T Consensus 310 ~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ 387 (679)
T 4e6h_A 310 RWESDNKLELSDDLHKARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQ 387 (679)
T ss_dssp HHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHhCCccccchhhHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 1111111 011223445554444333 5556666677777788888886 999998875 44566667777888
Q ss_pred HhhcCCHHHHHHHHHHHHHcCC---------CCC------------HHHHHHHHHHHHhcCcHHHHHHHHHhchhc-C-C
Q 041804 222 VGVSEGVDFAMRVYREMREMGC---------QPS------------VVTCNTVIKLLCENGRVREAYAVLAEMPKK-G-C 278 (403)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~---------~~~------------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~-~ 278 (403)
.-+.|+++.|..+|+.+.+... .|+ ..+|...+....+.|+.+.|..+|.+..+. + .
T Consensus 388 ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~ 467 (679)
T 4e6h_A 388 YELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV 467 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Confidence 8889999999999998876410 132 236777788888889999999999998765 2 1
Q ss_pred CCChhhHHHHHHh-hC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC--CHHHHHH
Q 041804 279 VPDVITYHCFFRC-LE-KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP--DEFAYNA 354 (403)
Q Consensus 279 ~p~~~~~~~l~~~-~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 354 (403)
.+......+.+.. ++ +.+.|..+|+...+. ..-+...+...+......|+.+.|..+|++.......+ ....|..
T Consensus 468 ~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~ 546 (679)
T 4e6h_A 468 TPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546 (679)
T ss_dssp CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2223333333332 23 478999999998876 23355667788888888899999999999988764221 3567888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 041804 355 LVDALIDKGMLDMARKYDEEMFAKG 379 (403)
Q Consensus 355 l~~~~~~~g~~~~a~~~~~~m~~~~ 379 (403)
+++.-.+.|+.+.+.++.+++.+.-
T Consensus 547 ~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 547 VIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 8888889999999999999998864
No 76
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.49 E-value=2.3e-11 Score=106.05 Aligned_cols=319 Identities=8% Similarity=-0.006 Sum_probs=201.1
Q ss_pred CcCCHHhHHHHHHHH--HccCChhHHHHHHHHhhhCCC-C--CCCHHHHHHHHHH--HHhcCChHHHH---------HHH
Q 041804 27 FTHTTDTYNSVIDIL--GKFFEFDLSWNLIHRMKDNPS-S--IPNHATFRIMFKR--YVTAHLVNEAM---------GTF 90 (403)
Q Consensus 27 ~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~-~--~~~~~~~~~l~~~--~~~~~~~~~a~---------~~~ 90 (403)
..|+..+-+.+-..| ...+++++|..+++++.+... . .++...|-.++.. ....+.+..+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345666666666666 789999999999998755320 1 1233334444332 12223333333 666
Q ss_pred HHHhhcCCC-cH----HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 91 NKLDEFGLK-DE----VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 91 ~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
+.+.....+ +. ..+......+...|++++|...+++........+ ..+....++..+...|...|+++.|...+
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVS-DDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 666543322 11 1334455667789999999999988765421100 11234567888999999999999999999
Q ss_pred HHHHhCC----C-CC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCC-ChhhHHHHHHHHhhcCCHHHHHHH
Q 041804 166 EEMDKRG----V-VK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK----GIKM-DVVAYNTVIRAVGVSEGVDFAMRV 234 (403)
Q Consensus 166 ~~~~~~~----~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 234 (403)
++..+.. . .+ ...+++.+..+|...|++++|.+.|++..+. +..+ ...++..+..+|...|+++.|...
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 8876531 1 11 2457788889999999999999999887663 1111 234677788888999999999999
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCC
Q 041804 235 YREMREM----GCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGI 310 (403)
Q Consensus 235 ~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~ 310 (403)
+++..+. +.+....++..+...|.+.|++++|...+++..+.....+.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------------------- 296 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSH---------------------------- 296 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCC----------------------------
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC----------------------------
Confidence 9988762 22223677888889999999999999999887653111110
Q ss_pred CCchhhHHHHHHHHHhcCC---cchHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 311 RPKMDTYVMLLRKFGRWGF---LRPVFVVWKKMEELGCSP-DEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 311 ~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
+.....+..+...+...++ +.+|...+++. +..| ....+..+...|.+.|++++|...+++..+
T Consensus 297 ~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 297 KFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp SCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111223334444445555 55555555542 1112 234556677777788888888887777654
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.48 E-value=7e-12 Score=97.22 Aligned_cols=164 Identities=11% Similarity=-0.025 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHH
Q 041804 102 VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYS 181 (403)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 181 (403)
..+..+...+...|++++|...++++.. ..+.+..++..+...+...|++++|.+.++++.+.... +...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 80 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYD-------ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVAT 80 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCC-------TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHH
Confidence 3455555555666666666666665554 22334555666666666666666666666666555333 455666
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041804 182 IYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENG 261 (403)
Q Consensus 182 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (403)
.+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 158 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMG 158 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcC
Confidence 66666666666666666666666552 3345566666666666677777777776666653 224566666666777777
Q ss_pred cHHHHHHHHHhchh
Q 041804 262 RVREAYAVLAEMPK 275 (403)
Q Consensus 262 ~~~~a~~~~~~~~~ 275 (403)
++++|...+++..+
T Consensus 159 ~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 159 RHEEALPHFKKANE 172 (186)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777766654
No 78
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.46 E-value=3.7e-12 Score=118.88 Aligned_cols=167 Identities=12% Similarity=-0.021 Sum_probs=151.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
-+..+|+.+...|.+.|++++|++.|++..+..+.+..++..+..+|.+.|++++|+..|++..+ ..+.+..+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~-------l~P~~~~a 79 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR-------ISPTFADA 79 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHH
Confidence 34678999999999999999999999999999988999999999999999999999999999887 44667889
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV 224 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 224 (403)
|..+...|.+.|++++|.+.|++..+.+.. +..+|+.+..+|...|++++|++.|++..+.. +-+...+..+..++..
T Consensus 80 ~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~ 157 (723)
T 4gyw_A 80 YSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQI 157 (723)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHh
Confidence 999999999999999999999999988766 78899999999999999999999999999874 3356789999999999
Q ss_pred cCCHHHHHHHHHHHHH
Q 041804 225 SEGVDFAMRVYREMRE 240 (403)
Q Consensus 225 ~~~~~~a~~~~~~~~~ 240 (403)
.|++++|.+.++++.+
T Consensus 158 ~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 158 VCDWTDYDERMKKLVS 173 (723)
T ss_dssp TTCCTTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888765
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.46 E-value=1.5e-11 Score=107.01 Aligned_cols=269 Identities=12% Similarity=0.012 Sum_probs=159.4
Q ss_pred cccccccHHHHHHhhhhhcccCCCcCCH----HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC----HHHHHHHHH
Q 041804 4 LSCYANDWKRALEFFNWVETDCHFTHTT----DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN----HATFRIMFK 75 (403)
Q Consensus 4 l~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~ 75 (403)
++...|++++|++.++....... ..+. .+++.+...+...|++++|...+++........++ ..++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 44556788888888777654221 1122 24556666777788888888887776542101112 223556677
Q ss_pred HHHhcCChHHHHHHHHHHhhcC----C---C-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHH
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFG----L---K-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~----~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (403)
.+...|++++|+..+++..+.. . + ....+..+...+...|++++|...+++........ +.+....++..
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~ 179 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY--QPQQQLQCLAM 179 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS--CGGGGHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc--CcHHHHHHHHH
Confidence 7778888888888887765532 1 2 34456667777778888888888777655432111 11113356667
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcH-HHHH-----HHHHHHHHcCChhHHHHHHHHHHHcCCCCC---hhhHHHH
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDL-HSYS-----IYMDIMCKSGKPWKAVKLYKEMKKKGIKMD---VVAYNTV 218 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l 218 (403)
+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...+++.......++ ...+..+
T Consensus 180 la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~l 259 (373)
T 1hz4_A 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 259 (373)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHH
Confidence 777777888888888888776543211111 1111 223346677888888877777654321111 2234556
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 219 IRAVGVSEGVDFAMRVYREMREM----GCQPSV-VTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
...+...|++++|...++..... |..++. ..+..+..++...|+.++|...+++...
T Consensus 260 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 260 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66777778888887777776543 111122 2455556667777777777777776553
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.45 E-value=9.8e-11 Score=101.86 Aligned_cols=281 Identities=7% Similarity=-0.085 Sum_probs=182.2
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------cHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH----ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK------DEV 102 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ 102 (403)
........+...|++++|...+++..... ...+. .+++.+...+...|++++|...+++....... ...
T Consensus 16 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 16 FNALRAQVAINDGNPDEAERLAKLALEEL-PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTC-CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 34455667778999999999999987754 12222 25677778889999999999999987764322 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccccccccccc-cCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----cH
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLV-EMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK----DL 177 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~----~~ 177 (403)
++..+...+...|++++|...+++........+.. .+....++..+...+...|++++|...+++........ ..
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 174 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL 174 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence 46778888999999999999998776532100000 02234566778888888999999999998876543221 23
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh-hhHH-----HHHHHHhhcCCHHHHHHHHHHHHHcCCCC---CHH
Q 041804 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV-VAYN-----TVIRAVGVSEGVDFAMRVYREMREMGCQP---SVV 248 (403)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~ 248 (403)
.++..+...+...|++++|...+++.......++. ..+. ..+..+...|+++.|...++........+ ...
T Consensus 175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 254 (373)
T 1hz4_A 175 QCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQG 254 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHH
Confidence 46777778888888888888888887654212111 1111 22234667888888888887766432211 122
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhc
Q 041804 249 TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKM-DTYVMLLRKFGRW 327 (403)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~ 327 (403)
.+..+...+...|++++|...+++..... ...+..++. ..+..+..++...
T Consensus 255 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~----------------------------~~~~~~~~~~~~~~~la~~~~~~ 306 (373)
T 1hz4_A 255 QWRNIARAQILLGEFEPAEIVLEELNENA----------------------------RSLRLMSDLNRNLLLLNQLYWQA 306 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------------------------HHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------------------------HhCcchhhHHHHHHHHHHHHHHh
Confidence 45566677777788888877777654320 011111111 2444556667777
Q ss_pred CCcchHHHHHHHHHh
Q 041804 328 GFLRPVFVVWKKMEE 342 (403)
Q Consensus 328 g~~~~a~~~~~~~~~ 342 (403)
|+.++|...+++...
T Consensus 307 g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 307 GRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 888888877777654
No 81
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.45 E-value=2.2e-11 Score=106.12 Aligned_cols=301 Identities=9% Similarity=-0.078 Sum_probs=198.9
Q ss_pred cccccHHHHHHhhhhhcccC-CC--cCCHHhHHHHHHHH--HccCChhHHH---------HHHHHhhhCCCCCCCH----
Q 041804 6 CYANDWKRALEFFNWVETDC-HF--THTTDTYNSVIDIL--GKFFEFDLSW---------NLIHRMKDNPSSIPNH---- 67 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~-~~--~~~~~~~~~li~~~--~~~~~~~~a~---------~~~~~~~~~~~~~~~~---- 67 (403)
..++++++|.++++.+.+.. .. ..+...|..++..- .-.+.+..+. +.++.+.... .+..
T Consensus 23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~~~~~l~ 100 (378)
T 3q15_A 23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQ--KKLTGLLK 100 (378)
T ss_dssp HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGG--HHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccC--CCCccHHH
Confidence 45788999999998875421 11 22334445544431 1123333333 6666665422 1111
Q ss_pred -HHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-----C-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 68 -ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-----K-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 68 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
..+......+...|++++|+..|++..+... + ...++..+..+|...|+++.|...+.+..............
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 1233455667889999999999999876521 1 55688899999999999999999988776532110000112
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDKR----GVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK----GIKMD 211 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 211 (403)
...+++.+...|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|...+++..+. +.+..
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 260 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH
Confidence 4567889999999999999999999887653 111 12357888999999999999999999998872 22333
Q ss_pred hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCc---HHHHHHHHHhchhcCCCCChhh
Q 041804 212 VVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ----PSVVTCNTVIKLLCENGR---VREAYAVLAEMPKKGCVPDVIT 284 (403)
Q Consensus 212 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~ 284 (403)
..++..+...+.+.|++++|...+++..+.... .....+..+...|...++ ..+|...+++... .
T Consensus 261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~---~----- 332 (378)
T 3q15_A 261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL---H----- 332 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC---H-----
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC---h-----
Confidence 667888999999999999999999999875321 123344555555556666 5555555544211 0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHh
Q 041804 285 YHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEE 342 (403)
Q Consensus 285 ~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 342 (403)
......+..+...|...|++++|...|++..+
T Consensus 333 --------------------------~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 333 --------------------------AYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------------------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 01123455677788888888888888887754
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.44 E-value=1.2e-09 Score=101.04 Aligned_cols=357 Identities=8% Similarity=-0.026 Sum_probs=232.8
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC---hHHHHH
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL---VNEAMG 88 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~ 88 (403)
.+.+..|+..... .+.|...|..++..+.+.+.++.+..+|+++...- +.+...|..-+..-.+.++ ++.+.+
T Consensus 49 ~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 49 SDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp SCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred HHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 3344455554432 35689999999999999999999999999999874 5677889988988888888 999999
Q ss_pred HHHHHhhcCC--CcHHHHHHHHHHHHhcCCH--------HHHHHHHhccccccccccccc--CcchHHHHHHHHHHHh--
Q 041804 89 TFNKLDEFGL--KDEVSYCNLVDALCEYKHV--------IEAQELCFGENKNVGFSGLVE--MNKTKIYNMILRGWFK-- 154 (403)
Q Consensus 89 ~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~-- 154 (403)
+|++.....+ ++...|...+....+.++. +...++|+...... |. ..+...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~v-----G~~d~~s~~iW~~Yi~f~~~~~ 199 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKC-----AIFEPKSIQFWNEYLHFLEHWK 199 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHT-----TTTCSSCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-----CcccccchHHHHHHHHHHHhcc
Confidence 9999998874 5777888888776665543 33446777665543 32 2345677777765442
Q ss_pred -------cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH-------------cCChhH-------------------
Q 041804 155 -------MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK-------------SGKPWK------------------- 195 (403)
Q Consensus 155 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~------------------- 195 (403)
.++++.+.++|++........-..+|......-.. ..+++.
T Consensus 200 ~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~ 279 (679)
T 4e6h_A 200 PVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNL 279 (679)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred ccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcc
Confidence 33456677777777653111111222111110000 001111
Q ss_pred ------------------------------------------------HHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 041804 196 ------------------------------------------------AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 196 ------------------------------------------------a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 227 (403)
+..+|++.... .+-+...|-..+..+...|+
T Consensus 280 p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 280 PITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSC
T ss_pred ccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCc
Confidence 22233333332 12233444445555556778
Q ss_pred HHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcC---------CCCC------------hhhH
Q 041804 228 VDFAM-RVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKG---------CVPD------------VITY 285 (403)
Q Consensus 228 ~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---------~~p~------------~~~~ 285 (403)
.+.|. .+|+..... .+.+...|-..+...-+.|+++.|..+|+.+.... -.|+ ...|
T Consensus 359 ~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vW 437 (679)
T 4e6h_A 359 DSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVY 437 (679)
T ss_dssp CTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHH
Confidence 88886 999998875 34466677778888889999999999999887531 0132 1234
Q ss_pred HHHHH---hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-CCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Q 041804 286 HCFFR---CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRW-GFLRPVFVVWKKMEELGCSPDEFAYNALVDALID 361 (403)
Q Consensus 286 ~~l~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (403)
...+. ..+..+.|..+|.+..+....+....|...+..-.+. ++++.|..+|+...+. ++.+...|..+++....
T Consensus 438 i~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 438 CVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHh
Confidence 43333 3366789999999998761112233444333333344 4589999999999876 45577788899998899
Q ss_pred cCCHHHHHHHHHHHHHcCC
Q 041804 362 KGMLDMARKYDEEMFAKGL 380 (403)
Q Consensus 362 ~g~~~~a~~~~~~m~~~~~ 380 (403)
.|+.+.|..+|++.+....
T Consensus 517 ~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 517 VNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HTCHHHHHHHHHHHTTTSS
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999999887654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.42 E-value=5.5e-11 Score=95.73 Aligned_cols=196 Identities=8% Similarity=-0.039 Sum_probs=156.5
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
.++..+......+...|++++|+..|++..+.. .+++...+..+..++...|++++|+..|++..+..+.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLT-NNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 466888999999999999999999999999875 2267788888999999999999999999999999988999999999
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCcch-------HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc---HH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT-------KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD---LH 178 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 178 (403)
.++...|++++|...+++.... .+.+. .+|..+...+...|++++|.+.|++..+. .|+ ..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA-------VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH-------CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 9999999999999999998873 23444 56888889999999999999999999886 344 46
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
.|..+..+|...| ...++.+...+ ..+...|.... ....+.+++|...+++..+..
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 7777777776554 33445555443 22344443333 234567899999999999874
No 84
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.42 E-value=4.3e-12 Score=105.65 Aligned_cols=233 Identities=11% Similarity=-0.026 Sum_probs=160.9
Q ss_pred cccHHHHHHhhhhhcc------cCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhC------CCCCCCHHHHHHHHH
Q 041804 8 ANDWKRALEFFNWVET------DCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDN------PSSIPNHATFRIMFK 75 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~ 75 (403)
.|++++|++.|+.... ....+....++..+..++...|++++|...+++..+. +..+....++..+..
T Consensus 14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~ 93 (283)
T 3edt_B 14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAV 93 (283)
T ss_dssp CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 4666666666665553 1122345678999999999999999999999988764 211234568899999
Q ss_pred HHHhcCChHHHHHHHHHHhhcC--------CCcHHHHHHHHHHHHhcCCHHHHHHHHhccccccccc-ccccCcchHHHH
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFG--------LKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFS-GLVEMNKTKIYN 146 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~ 146 (403)
+|...|++++|+..|++..+.. +....++..+..++...|++++|...+++........ +...+....++.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 173 (283)
T 3edt_B 94 LYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKN 173 (283)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 9999999999999999988761 2267889999999999999999999998877631000 001344567889
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC-------CCCCc-HHHHHHHHHHHHHcCChhHHHHHHHHHHH---c-C--CCCCh
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKR-------GVVKD-LHSYSIYMDIMCKSGKPWKAVKLYKEMKK---K-G--IKMDV 212 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~-~--~~~~~ 212 (403)
.+...|...|++++|.+.+++..+. ...+. ...|..+...+...+....+.. +..... . + .+...
T Consensus 174 ~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 252 (283)
T 3edt_B 174 NLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVN 252 (283)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHH
Confidence 9999999999999999999988753 11222 2334444444443333333322 222211 1 1 12234
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 213 VAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 213 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
.++..+...|...|++++|..++++..+.
T Consensus 253 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 253 TTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 57888899999999999999999988753
No 85
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=7.4e-11 Score=94.98 Aligned_cols=204 Identities=13% Similarity=-0.013 Sum_probs=159.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-KDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTK 143 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 143 (403)
.++..+......+...|++++|+..|++..+..+ ++...+..+..++...|++++|...+++... ..+.+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~ 77 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK-------KNYNLAN 77 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------TTCSHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH-------hCcchHH
Confidence 5678889999999999999999999999999998 6888888899999999999999999999887 4456788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC---hh
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL-------HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD---VV 213 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~ 213 (403)
++..+...|...|++++|.+.|++..+..+. +. ..|..+...+...|++++|+..|++..+. .|+ ..
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~ 154 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTD 154 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHH
Confidence 8999999999999999999999999887654 44 56888888999999999999999999876 444 45
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHH
Q 041804 214 AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCF 288 (403)
Q Consensus 214 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 288 (403)
.+..+..+|...| ..+++.+...+. .+...|.... ....+.+++|...|++..+. .|+......+
T Consensus 155 ~~~~l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~~~~~ 219 (228)
T 4i17_A 155 ALYSLGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTL--SPNRTEIKQM 219 (228)
T ss_dssp HHHHHHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred HHHHHHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc--CCCCHHHHHH
Confidence 6666766765443 344555554432 2344444433 33467789999999998875 4654444333
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.40 E-value=1.4e-11 Score=102.45 Aligned_cols=232 Identities=13% Similarity=0.019 Sum_probs=159.0
Q ss_pred HccCChhHHHHHHHHhhh-------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc------C-CC-cHHHHHH
Q 041804 42 GKFFEFDLSWNLIHRMKD-------NPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEF------G-LK-DEVSYCN 106 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~-~~~~~~~ 106 (403)
...|++++|+.++++..+ .. .+....++..+...|...|++++|+..|++..+. + .+ ...++..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHD-HPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSS-SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 345677777776666554 12 1234668899999999999999999999998865 2 22 7788999
Q ss_pred HHHHHHhcCCHHHHHHHHhccccccccc-ccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC------CCCC-cHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFS-GLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR------GVVK-DLH 178 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~ 178 (403)
+..++...|++++|...+.+........ +...+....++..+...|...|++++|.+.+++..+. +..| ...
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999999998876531000 0012455778899999999999999999999988765 1122 456
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc-------CCCCChh-hHHHHHHHHhhcCCHH------HHHHHHHHHHHcCCC
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKKK-------GIKMDVV-AYNTVIRAVGVSEGVD------FAMRVYREMREMGCQ 244 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~-~~~~ll~~~~~~~~~~------~a~~~~~~~~~~~~~ 244 (403)
++..+..+|...|++++|...+++..+. ...+... .+..+...+...+... .+...++.... ..+
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7888999999999999999999998764 1222322 3333333332222222 22222211111 111
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
....++..+...|...|++++|..+|++..+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2345788889999999999999999998764
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.34 E-value=1.3e-11 Score=92.02 Aligned_cols=146 Identities=10% Similarity=0.005 Sum_probs=119.1
Q ss_pred CcccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc
Q 041804 1 RETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTA 80 (403)
Q Consensus 1 L~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (403)
|+.++..+|++++|+..++.... ..+.++..+..+..+|.+.|++++|++.|++..+.. +.+..+|..+..+|...
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ--ERDPKAHRFLGLLYELE 78 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 67889999999999999998874 223346677789999999999999999999999875 45788999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHH-HhcccccccccccccCcchHHHHHHHHHHHhcCC
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQEL-CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW 157 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 157 (403)
|++++|+..|++..+..+.+..++..+..++.+.|+.+++... +++..+ ..|.+..+|......+...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~-------l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK-------LFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-------hCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999988999999999999999998776654 466665 335567777777777666654
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.30 E-value=2.3e-10 Score=94.13 Aligned_cols=189 Identities=8% Similarity=-0.087 Sum_probs=126.1
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVS 103 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~ 103 (403)
+.+...+..+...+.+.|++++|+..|+.+.+..+..|. ..++..+..+|...|++++|+..|++..+..+. ...+
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345778888899999999999999999999987511111 678889999999999999999999999998664 4667
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041804 104 YCNLVDALCE--------YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK 175 (403)
Q Consensus 104 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (403)
+..+..++.. .|++++|...|+++.... +.+......+ ..+..+...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------p~~~~~~~a~--------------~~~~~~~~~---- 146 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-------PNHELVDDAT--------------QKIRELRAK---- 146 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-------TTCTTHHHHH--------------HHHHHHHHH----
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-------cCchhHHHHH--------------HHHHHHHHH----
Confidence 8888889988 999999999999887642 2222222111 111111100
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHhhc----------CCHHHHHHHHHHHHHc
Q 041804 176 DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKM--DVVAYNTVIRAVGVS----------EGVDFAMRVYREMREM 241 (403)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~ 241 (403)
-...+..+..+|...|++++|+..|+.+.+..... ....+..+..+|... |++++|...|+.+.+.
T Consensus 147 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 147 LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 11124455556666666666666666666542111 123444555555544 6666666666666665
No 89
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.29 E-value=4.4e-10 Score=92.48 Aligned_cols=195 Identities=11% Similarity=-0.016 Sum_probs=145.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 64 IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD---EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
+.+...+..+...+.+.|++++|+..|+++.+..+.+ ..++..+..++...|++++|...|++.....+ ..+.
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p----~~~~ 87 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ----IDPR 87 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----TCTT
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----CCch
Confidence 3567788888999999999999999999999988766 78899999999999999999999999887421 1223
Q ss_pred chHHHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh
Q 041804 141 KTKIYNMILRGWFK--------MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV 212 (403)
Q Consensus 141 ~~~~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 212 (403)
...++..+..++.. .|++++|...|+++.+..+. +......+.. +...... -.
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~--------------~~~~~~~----~~ 148 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQK--------------IRELRAK----LA 148 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHH--------------HHHHHHH----HH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHH--------------HHHHHHH----HH
Confidence 35667788888888 99999999999999886543 2222222211 1111110 01
Q ss_pred hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhc----------CcHHHHHHHHHhchhcCCCC
Q 041804 213 VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP--SVVTCNTVIKLLCEN----------GRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 213 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~~~p 280 (403)
..+..+...|.+.|+++.|...|+.+.+..... ....+..+..+|... |++++|...|+++.+. .|
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p 226 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FP 226 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CT
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CC
Confidence 124567788999999999999999999874332 245677788888866 8999999999999876 45
Q ss_pred Chh
Q 041804 281 DVI 283 (403)
Q Consensus 281 ~~~ 283 (403)
+..
T Consensus 227 ~~~ 229 (261)
T 3qky_A 227 DSP 229 (261)
T ss_dssp TCT
T ss_pred CCh
Confidence 543
No 90
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.28 E-value=3.3e-10 Score=82.54 Aligned_cols=127 Identities=13% Similarity=0.133 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
..+...+...|++++|+.+|+++.+.++.+...+..+...+...|++++|...++++... .+.+...+..+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~ 77 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPRSAEAWYNLGN 77 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------CCCchHHHHHHHH
Confidence 334444444444444444444444443334444444444444444444444444443321 1222333444444
Q ss_pred HHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 151 GWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 151 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
.+...|++++|.+.++++.+.... +...+..+...+...|++++|...++++..
T Consensus 78 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 78 AYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 444444444444444444443222 333444444444444444444444444443
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.27 E-value=2.4e-10 Score=90.42 Aligned_cols=162 Identities=6% Similarity=-0.121 Sum_probs=84.8
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHH----------------HHHHHHhcCChHHHHHHHHHHhh
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRI----------------MFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
.+......+...|++++|+..|++..+.. |+ ...|.. +..+|.+.|++++|+..|++..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN---IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC---HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33344455566677777777776666643 32 334444 55566666666666666666666
Q ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCC
Q 041804 96 FGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW--WGKCREFWEEMDKRGV 173 (403)
Q Consensus 96 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~ 173 (403)
..+.+...+..+..++...|++++|...|++... ..|.+..++..+...|...|+ .+.+...+..... .
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-------~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~ 153 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ-------LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--P 153 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--C
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--C
Confidence 6655666666666666666666666666665554 224445555555555544332 2233333333321 1
Q ss_pred CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 174 VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 174 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
.|....+..+..++...|++++|...|++..+.
T Consensus 154 ~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 154 TKMQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 222223333344444555666666666655543
No 92
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.27 E-value=2.8e-10 Score=82.90 Aligned_cols=132 Identities=11% Similarity=0.114 Sum_probs=114.4
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL 111 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (403)
..+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...|+++...++.+...+..+...+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 357778889999999999999999988764 356778888999999999999999999999988877888899999999
Q ss_pred HhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG 172 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 172 (403)
...|++++|...++++... .+.+..++..+...+...|++++|.+.++++.+.+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALEL-------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HHhcCHHHHHHHHHHHHHh-------CCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 9999999999999888763 34567788889999999999999999999987653
No 93
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.26 E-value=5.6e-09 Score=85.90 Aligned_cols=145 Identities=8% Similarity=-0.001 Sum_probs=71.3
Q ss_pred HHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHH
Q 041804 86 AMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFW 165 (403)
Q Consensus 86 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 165 (403)
|+..|++..+.+.++..++..+..++...|++++|++++.+..... ....+...+..++..+.+.|+.+.|.+.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~-----~~~~~lea~~l~vqi~L~~~r~d~A~k~l 159 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDND-----EAEGTTELLLLAIEVALLNNNVSTASTIF 159 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSS-----CSTTHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-----CCcCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4555555554443333444455555555666666666655543320 00234455555556666666666666666
Q ss_pred HHHHhCCCCC-----cHHHHHHHHHH--HHHcC--ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 041804 166 EEMDKRGVVK-----DLHSYSIYMDI--MCKSG--KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236 (403)
Q Consensus 166 ~~~~~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 236 (403)
++|.+. .| +..+...+..+ ....| ++++|..+|+++.+. .|+..+-..++.++.+.|++++|...++
T Consensus 160 ~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 160 DNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVE 235 (310)
T ss_dssp HHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHH
Confidence 665543 22 13334444433 22223 556666666665443 2332222333335555666666666665
Q ss_pred HHH
Q 041804 237 EMR 239 (403)
Q Consensus 237 ~~~ 239 (403)
.+.
T Consensus 236 ~l~ 238 (310)
T 3mv2_B 236 LLL 238 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=8e-09 Score=84.99 Aligned_cols=175 Identities=9% Similarity=-0.014 Sum_probs=105.2
Q ss_pred HHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 161 CREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI-KMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 161 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
|...|++..+.+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 33455556777777778888888888877765542 1245566677777788888888888888877
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHhcC--cHHHHHHHHHhchhcCCCCCh----hhHHHHHHhhCCHHHHHHHHHHHH
Q 041804 240 EMGCQP-----SVVTCNTVIKL--LCENG--RVREAYAVLAEMPKKGCVPDV----ITYHCFFRCLEKPREILGLFDRMI 306 (403)
Q Consensus 240 ~~~~~~-----~~~~~~~li~~--~~~~g--~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~a~~~~~~~~ 306 (403)
+. .| +..+...+..+ ....| +..+|..+|+++.+. .|+. ..++ .....+++++|.+.++.+.
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHH
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHH
Confidence 65 34 23444444444 22223 777788888877654 3331 2233 2223366667766666554
Q ss_pred HcC---------CCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc
Q 041804 307 ESG---------IRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL 343 (403)
Q Consensus 307 ~~~---------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 343 (403)
+.. -+-++.++..+|......|+ +|.++++++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 321 02245555455555555665 677777777765
No 95
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.23 E-value=5.9e-10 Score=88.17 Aligned_cols=187 Identities=10% Similarity=0.046 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHH
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
...+......+...|++++|+..|++..+..+.+...+...- ... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~------------------~~~-------~~~~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTN------------------VDK-------NSEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHH------------------SCT-------TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhh------------------hcc-------hhhhhHHHHH
Confidence 344555667788999999999999999988766666555410 000 1112223344
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE 226 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 226 (403)
.+...|.+.|++++|...|++..+..+. +...+..+..++...|++++|...|++..+.. +-+..++..+..+|...+
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 5666666677777777777766666554 56666666677777777777777777766653 334555666655554443
Q ss_pred C--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhh
Q 041804 227 G--VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVIT 284 (403)
Q Consensus 227 ~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 284 (403)
+ ...+...++.... ..|....+.....++...|++++|...|++..+. .|+...
T Consensus 137 ~~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 137 EQEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 2 2334444444321 1222223333445555566777777777776654 455443
No 96
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.23 E-value=1.8e-10 Score=107.94 Aligned_cols=153 Identities=7% Similarity=-0.168 Sum_probs=77.8
Q ss_pred HccCChhHHHHHHHHhh--------hCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 42 GKFFEFDLSWNLIHRMK--------DNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
...|++++|++.+++.. +.. +.+...+..+..++...|++++|+..|++..+.++.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH
Confidence 44555555555555554 222 22334455555555555555555555555555554455555555555555
Q ss_pred cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCh
Q 041804 114 YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP 193 (403)
Q Consensus 114 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 193 (403)
.|++++|...|++... ..+.+...+..+..+|.+.|++++ .+.|++..+.++. +...|..+..++.+.|++
T Consensus 480 ~g~~~~A~~~~~~al~-------l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~ 550 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD-------TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDR 550 (681)
T ss_dssp HTCHHHHHHHHHHHHH-------HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred cCCHHHHHHHHHHHHH-------hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCH
Confidence 5555555555555444 223344445555555555555555 5555555544433 444555555555555555
Q ss_pred hHHHHHHHHHHH
Q 041804 194 WKAVKLYKEMKK 205 (403)
Q Consensus 194 ~~a~~~~~~~~~ 205 (403)
++|++.|++..+
T Consensus 551 ~~A~~~~~~al~ 562 (681)
T 2pzi_A 551 VGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHTSCT
T ss_pred HHHHHHHHhhcc
Confidence 555555554443
No 97
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.23 E-value=1.3e-08 Score=84.65 Aligned_cols=224 Identities=6% Similarity=-0.054 Sum_probs=181.4
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHhhcCCCcHHHHHHHHHHH----Hhc
Q 041804 41 LGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH--LVNEAMGTFNKLDEFGLKDEVSYCNLVDAL----CEY 114 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~----~~~ 114 (403)
..+....++|+.+++.+...+ +-+..+|+.--.++...+ ++++++.+++.+....+.+..+|+.-..++ ...
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhc
Confidence 334444579999999999876 345678999888888888 999999999999999988888888776666 555
Q ss_pred ---CCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChh--HHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Q 041804 115 ---KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWG--KCREFWEEMDKRGVVKDLHSYSIYMDIMCK 189 (403)
Q Consensus 115 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 189 (403)
+++++++..++++.. ..+.+..+|+.-.-...+.|.++ ++++.++++.+.++. |..+|+.-...+..
T Consensus 121 ~~~~~~~~EL~~~~~~l~-------~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLS-------SDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFS 192 (306)
T ss_dssp TTCCCTHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHS
T ss_pred cccCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 788999999998887 55788899999888888899888 999999999998887 88899888777777
Q ss_pred cCC------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhc
Q 041804 190 SGK------PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDF-AMRVYREMREMG--CQPSVVTCNTVIKLLCEN 260 (403)
Q Consensus 190 ~~~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~ 260 (403)
.+. ++++++.++.+.... +-|...|+.+-..+.+.|+... +..+...+.+.+ -..+...+..+...|.+.
T Consensus 193 l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~ 271 (306)
T 3dra_A 193 KKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQ 271 (306)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHT
T ss_pred ccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHcc
Confidence 776 888999999988875 4588888888888877777433 445555554432 134678888899999999
Q ss_pred CcHHHHHHHHHhchh
Q 041804 261 GRVREAYAVLAEMPK 275 (403)
Q Consensus 261 g~~~~a~~~~~~~~~ 275 (403)
|+.++|.++++.+.+
T Consensus 272 ~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 272 KKYNESRTVYDLLKS 286 (306)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999999875
No 98
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.22 E-value=6.2e-11 Score=88.39 Aligned_cols=146 Identities=10% Similarity=-0.079 Sum_probs=97.1
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH 116 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (403)
|..++...|++++|+..+....... +.+...+..+...|.+.|++++|++.|++..+..+.+..+|..+..++...|+
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445556677778877777776643 12234556677778888888888888888887777777788888888888888
Q ss_pred HHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHH-HHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 117 VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREF-WEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
+++|...|++... ..+.+..++..+...|.+.|++++|.+. +++..+..+. +..+|......+...|+
T Consensus 81 ~~~A~~~~~~al~-------~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVE-------LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCc
Confidence 8888877777665 3345566777777777777777665544 4666665544 55666666555555543
No 99
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.20 E-value=4.9e-08 Score=87.50 Aligned_cols=342 Identities=7% Similarity=-0.006 Sum_probs=218.1
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCC-hhHHHHHHHHhhhCCC-CCCCHHHHHHHHHHHH----hcCC
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFE-FDLSWNLIHRMKDNPS-SIPNHATFRIMFKRYV----TAHL 82 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~----~~~~ 82 (403)
++++.+..+|+.... ..|+...|...+....+.++ .+....+|+.....-+ .+++...|...+..+. ..++
T Consensus 28 ~~~e~~~~iferal~---~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLK---KSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHST---TCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhc---cCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 678899999988875 35799999998888877764 4667788887776421 2356778888777654 3467
Q ss_pred hHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhc-------------CCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 83 VNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEY-------------KHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.+.+.++|++....+.. -...|......-... +.+..|..++...... ....+...|...
T Consensus 105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~------~~~~s~~~W~~y 178 (493)
T 2uy1_A 105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL------IRGWSVKNAARL 178 (493)
T ss_dssp HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHH------HhhccHHHHHHH
Confidence 88899999999886444 333333332221111 1222333333333221 001123355555
Q ss_pred HHHHHhcC--C-----hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 041804 149 LRGWFKMS--W-----WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRA 221 (403)
Q Consensus 149 ~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 221 (403)
+..-...+ - .+.+..+|+++....+. +...|...+..+...|+++.|..+|++.... +.+...+. .
T Consensus 179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~-~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~ 251 (493)
T 2uy1_A 179 IDLEMENGMKLGGRPHESRMHFIHNYILDSFYY-AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----Y 251 (493)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----H
T ss_pred HHHHhcCCccCcchhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----H
Confidence 44432221 1 34567789988876544 6788999999999999999999999999988 33333332 2
Q ss_pred HhhcCCHHHHHHHHHHHHHcC------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHH--H
Q 041804 222 VGVSEGVDFAMRVYREMREMG------------CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYH--C 287 (403)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ 287 (403)
|+...+.+.. ++.+.+.- .......|...+..+.+.++.+.|..+|++. ... ..+...|. +
T Consensus 252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A 326 (493)
T 2uy1_A 252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCA 326 (493)
T ss_dssp HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHH
T ss_pred HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHH
Confidence 3222221221 23332210 0112345667777777788899999999998 321 12333332 2
Q ss_pred HHH-hhC-CHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCH
Q 041804 288 FFR-CLE-KPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGML 365 (403)
Q Consensus 288 l~~-~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 365 (403)
.+. .++ +.+.|..+|+...+.... ++..+...+....+.|+.+.|..+|+++. .....|...+..-...|+.
T Consensus 327 ~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~ 400 (493)
T 2uy1_A 327 FIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSM 400 (493)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCH
Confidence 222 223 588999999999875422 34456667777788999999999999973 3578899999888889999
Q ss_pred HHHHHHHHHHHH
Q 041804 366 DMARKYDEEMFA 377 (403)
Q Consensus 366 ~~a~~~~~~m~~ 377 (403)
+.+..++++...
T Consensus 401 ~~~r~v~~~~~~ 412 (493)
T 2uy1_A 401 ELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988875
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=2.9e-10 Score=87.39 Aligned_cols=159 Identities=13% Similarity=-0.023 Sum_probs=78.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHH
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRG 151 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 151 (403)
.+...+...|++++|+..|++..+..+.+...+..+..++...|++++|...+++.... .+ +...+..+...
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~-------~p-~~~~~~~~~~~ 82 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE-------YQ-DNSYKSLIAKL 82 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG-------GC-CHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc-------cC-ChHHHHHHHHH
Confidence 34444555555555555555555544445555555555555555555555555554432 11 22222111111
Q ss_pred -HHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-ChhhHHHHHHHHhhcCCHH
Q 041804 152 -WFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKM-DVVAYNTVIRAVGVSEGVD 229 (403)
Q Consensus 152 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~ 229 (403)
+...+....|...+++..+..+. +...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 11112223345555555554433 45555566666666666666666666655543221 2335555556666666666
Q ss_pred HHHHHHHHHH
Q 041804 230 FAMRVYREMR 239 (403)
Q Consensus 230 ~a~~~~~~~~ 239 (403)
+|...|+...
T Consensus 162 ~A~~~y~~al 171 (176)
T 2r5s_A 162 AIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 6666655544
No 101
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.20 E-value=1.1e-09 Score=84.21 Aligned_cols=163 Identities=10% Similarity=-0.040 Sum_probs=112.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHH-
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDAL- 111 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~- 111 (403)
.+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..+..+ ++..+..+....
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHH
Confidence 45566777788888888888888777654 34567778888888888888888888888777666 554433332221
Q ss_pred HhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc
Q 041804 112 CEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKS 190 (403)
Q Consensus 112 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 190 (403)
...+....+...+++... ..+.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...
T Consensus 85 ~~~~~~~~a~~~~~~al~-------~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~ 157 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELA-------ANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSAL 157 (176)
T ss_dssp HHHHTSCHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHH
T ss_pred HhhcccchHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHh
Confidence 122222345666666655 334567777888888888888888888888887776543 355777788888888
Q ss_pred CChhHHHHHHHHHHH
Q 041804 191 GKPWKAVKLYKEMKK 205 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~ 205 (403)
|+.++|...|++...
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 888888888876653
No 102
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.20 E-value=2.2e-09 Score=86.01 Aligned_cols=189 Identities=7% Similarity=-0.117 Sum_probs=126.4
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHH---HHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV---SYC 105 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~ 105 (403)
++..+..+...+.+.|++++|+..|+++....+..|. ..++..+..+|.+.|++++|+..|+++.+..+.+.. ++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 3456667778888899999999999998875422222 357788888999999999999999999888776432 455
Q ss_pred HHHHHHHh------------------cCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHH
Q 041804 106 NLVDALCE------------------YKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEE 167 (403)
Q Consensus 106 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 167 (403)
.+..++.. .|+.++|...|+++.... |.+..++...... ..+...
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-------P~~~~a~~a~~~l----------~~~~~~ 145 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-------PNSQYTTDATKRL----------VFLKDR 145 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-------TTCTTHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-------cCChhHHHHHHHH----------HHHHHH
Confidence 55555543 578999999999888742 2232222221110 011111
Q ss_pred HHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC--ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 168 MDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKM--DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 168 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
+. .....+...|.+.|++++|+..|+.+.+..... ....+..+..++.+.|+.++|...++.+...++
T Consensus 146 ~~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 LA--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HH--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HH--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 11 122345677888888888888888888762111 124577778888888888888888888877643
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.20 E-value=2.3e-09 Score=89.31 Aligned_cols=167 Identities=8% Similarity=-0.056 Sum_probs=111.4
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.+...+..+...+...|++++|+..|++..+..+.+...+..+..++.+.|++++|...++++... .+.....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-------~p~~~~~ 187 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-------DQDTRYQ 187 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-------GCSHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-------hcchHHH
Confidence 344556667777777788888888888877777777777777777777888888888777776653 1222222
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CChhhHHHHHHHHh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIK-MDVVAYNTVIRAVG 223 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~ 223 (403)
.......+...++.+.|.+.+++.....+. +...+..+...+...|++++|...|.++.+.... .+...+..+...+.
T Consensus 188 ~~~~~~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~ 266 (287)
T 3qou_A 188 GLVAQIELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILA 266 (287)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHH
Confidence 223333355666677777777777766554 6667777777777777777777777777766321 12456677777777
Q ss_pred hcCCHHHHHHHHHHHH
Q 041804 224 VSEGVDFAMRVYREMR 239 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~ 239 (403)
..|+.+.|...+++..
T Consensus 267 ~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 267 ALGTGDALASXYRRQL 282 (287)
T ss_dssp HHCTTCHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHH
Confidence 7777777776666554
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=6.6e-10 Score=93.00 Aligned_cols=171 Identities=9% Similarity=-0.036 Sum_probs=121.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhC----CCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------cH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDN----PSSIPN-HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK------DE 101 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~ 101 (403)
.|......|...|++++|...|++.... + .+++ ..+|+.+..+|...|++++|+..|++..+..+. ..
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4666677888999999999999877653 2 1122 568999999999999999999999988765432 24
Q ss_pred HHHHHHHHHHHhc-CCHHHHHHHHhcccccccccccccCc-chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--
Q 041804 102 VSYCNLVDALCEY-KHVIEAQELCFGENKNVGFSGLVEMN-KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL-- 177 (403)
Q Consensus 102 ~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 177 (403)
.++..+..+|... |++++|...+++........ +..+ ...++..+...+.+.|++++|...|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 195 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQ 195 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCccc
Confidence 5788899999996 99999999988876531000 0000 1345777777888888888888888887775443221
Q ss_pred ----HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 178 ----HSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 178 ----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..|..+..++...|++++|...|++..+.
T Consensus 196 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 228 (292)
T 1qqe_A 196 WSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (292)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 14566666777777777777777776543
No 105
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.20 E-value=1.1e-09 Score=91.39 Aligned_cols=169 Identities=6% Similarity=-0.054 Sum_probs=142.1
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
+.+...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++|+..++++....+.........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHH
Confidence 4456778888899999999999999999998875 35678899999999999999999999999988776544444445
Q ss_pred HHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-cHHHHHHHHHH
Q 041804 108 VDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK-DLHSYSIYMDI 186 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 186 (403)
...+...++.++|...+++... ..+.+...+..+...+...|++++|.+.|.++.+..+.. +...+..++..
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~-------~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~ 264 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA-------ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEI 264 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHH
T ss_pred HHHHHhhcccCccHHHHHHHHh-------cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHH
Confidence 5556777888888888888776 447788899999999999999999999999999876552 36789999999
Q ss_pred HHHcCChhHHHHHHHHHHH
Q 041804 187 MCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 187 ~~~~~~~~~a~~~~~~~~~ 205 (403)
+...|+.++|...|++...
T Consensus 265 ~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 265 LAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHCTTCHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHHHHHH
Confidence 9999999999999887654
No 106
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.19 E-value=3e-09 Score=89.00 Aligned_cols=210 Identities=10% Similarity=0.060 Sum_probs=141.2
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC----CC--cHHHHHHHHHHHHhcCCHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG----LK--DEVSYCNLVDALCEYKHVIE 119 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~ 119 (403)
++++|...|++. ...|...|++++|...|.+..+.. .+ ...+|+.+..+|...|++++
T Consensus 32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~ 95 (292)
T 1qqe_A 32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVN 95 (292)
T ss_dssp HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 488888887776 456788999999999999886642 22 35789999999999999999
Q ss_pred HHHHHhcccccccccccccC-cchHHHHHHHHHHHhc-CChhHHHHHHHHHHhCCCCC-c----HHHHHHHHHHHHHcCC
Q 041804 120 AQELCFGENKNVGFSGLVEM-NKTKIYNMILRGWFKM-SWWGKCREFWEEMDKRGVVK-D----LHSYSIYMDIMCKSGK 192 (403)
Q Consensus 120 a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~ 192 (403)
|...+++........ +.. .-..+++.+...|... |++++|...|++..+..... + ..++..+...+...|+
T Consensus 96 A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 173 (292)
T 1qqe_A 96 AVDSLENAIQIFTHR--GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ 173 (292)
T ss_dssp HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC
Confidence 999988776532000 101 1145677888888885 88888888888776532110 1 3467777888888888
Q ss_pred hhHHHHHHHHHHHcCCCCChh------hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH--
Q 041804 193 PWKAVKLYKEMKKKGIKMDVV------AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSV------VTCNTVIKLLC-- 258 (403)
Q Consensus 193 ~~~a~~~~~~~~~~~~~~~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~li~~~~-- 258 (403)
+++|+..|++..+........ .+..+..++...|+++.|...|++..+. .|+. ..+..++.+|.
T Consensus 174 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~ 251 (292)
T 1qqe_A 174 YIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEG 251 (292)
T ss_dssp HHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcC
Confidence 888888888887763222211 4556666777788888888888877653 2221 12334455553
Q ss_pred hcCcHHHHHHHHHhchh
Q 041804 259 ENGRVREAYAVLAEMPK 275 (403)
Q Consensus 259 ~~g~~~~a~~~~~~~~~ 275 (403)
..+++++|...|+.+..
T Consensus 252 ~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 252 DSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp CTTTHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHhccCCc
Confidence 34567777777766544
No 107
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.19 E-value=5.8e-10 Score=104.56 Aligned_cols=185 Identities=11% Similarity=-0.038 Sum_probs=142.2
Q ss_pred HhcCChHHHHHHHHHHh--------hcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 78 VTAHLVNEAMGTFNKLD--------EFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 78 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
...|++++|++.|++.. +..+.+...+..+..++...|++++|...+++... ..+.+...|..+.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~-------~~p~~~~a~~~lg 474 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE-------RVGWRWRLVWYRA 474 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HHCCCHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc-------cCcchHHHHHHHH
Confidence 66788999999999888 66666888888888889999999999998888876 4466778888888
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHH
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVD 229 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 229 (403)
..+...|++++|.+.|++..+..+. +...|..+..+|.+.|++++ ++.|++..+.+ +-+...+..+..++.+.|+++
T Consensus 475 ~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~ 551 (681)
T 2pzi_A 475 VAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRV 551 (681)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHH
Confidence 8899999999999999988887665 67788888888899999998 88898888774 346678888888888999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCc--------HHHHHHHHHhch
Q 041804 230 FAMRVYREMREMGCQPS-VVTCNTVIKLLCENGR--------VREAYAVLAEMP 274 (403)
Q Consensus 230 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~--------~~~a~~~~~~~~ 274 (403)
+|...|+++.+. .|+ ...+..+..++...++ +++|.+.+..+.
T Consensus 552 ~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~ 603 (681)
T 2pzi_A 552 GAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALP 603 (681)
T ss_dssp HHHHHHHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCC
Confidence 999988887765 343 4566666666655443 555555555443
No 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1.2e-09 Score=100.53 Aligned_cols=164 Identities=10% Similarity=-0.076 Sum_probs=119.8
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
.|++++|++.|+...+. .+.+...+..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|+
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 57889999999888742 24457888889999999999999999999988865 346778888999999999999999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc---CChhHHHHH
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM---SWWGKCREF 164 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~ 164 (403)
+.|++..+..+.+...+..+..++...|++++|.+.+++... ..+.+..++..+...+... |++++|.+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~ 150 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQ-------LLPEEPYITAQLLNWRRRLCDWRALDVLSAQ 150 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhhccccHHHHHHH
Confidence 999999988877888999999999999999999999988776 3355677888888888888 899999999
Q ss_pred HHHHHhCCCCCcHHHHHHH
Q 041804 165 WEEMDKRGVVKDLHSYSIY 183 (403)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~l 183 (403)
+++..+.+.. +...|..+
T Consensus 151 ~~~al~~~p~-~~~~~~~l 168 (568)
T 2vsy_A 151 VRAAVAQGVG-AVEPFAFL 168 (568)
T ss_dssp HHHHHHHTCC-CSCHHHHT
T ss_pred HHHHHhcCCc-ccChHHHh
Confidence 9988887654 33344433
No 109
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.15 E-value=9.9e-10 Score=101.15 Aligned_cols=154 Identities=4% Similarity=-0.148 Sum_probs=123.1
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQEL 123 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 123 (403)
.|++++|...+++..+.. +.+...|..+...+...|++++|++.|++..+..+.+..++..+..++...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999988865 346788999999999999999999999999999888999999999999999999999999
Q ss_pred HhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc---CChhHHHHHH
Q 041804 124 CFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS---GKPWKAVKLY 200 (403)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~ 200 (403)
+++... ..+.+...+..+...|.+.|++++|.+.|++..+.... +...+..+..++... |++++|.+.+
T Consensus 80 ~~~al~-------~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~ 151 (568)
T 2vsy_A 80 LQQASD-------AAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQV 151 (568)
T ss_dssp HHHHHH-------HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHHh-------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 999887 34567788999999999999999999999999988665 778899999999999 9999999999
Q ss_pred HHHHHcC
Q 041804 201 KEMKKKG 207 (403)
Q Consensus 201 ~~~~~~~ 207 (403)
++..+.+
T Consensus 152 ~~al~~~ 158 (568)
T 2vsy_A 152 RAAVAQG 158 (568)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998874
No 110
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.14 E-value=7.6e-09 Score=82.88 Aligned_cols=188 Identities=7% Similarity=-0.155 Sum_probs=130.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc-
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD---EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK- 141 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~- 141 (403)
+...+..+...+...|++++|+..|+++.+..+.+ ...+..+..++.+.|++++|...|+++.... +..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----P~~~~~ 77 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PTHPNI 77 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCcH
Confidence 44566677888999999999999999999877653 4688889999999999999999999987642 11121
Q ss_pred hHHHHHHHHHHHh------------------cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041804 142 TKIYNMILRGWFK------------------MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEM 203 (403)
Q Consensus 142 ~~~~~~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 203 (403)
..++..+..++.. .|++++|...|+++.+..+. +..++....... .+...+
T Consensus 78 ~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~ 146 (225)
T 2yhc_A 78 DYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL 146 (225)
T ss_dssp HHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH
Confidence 1244445555543 46677777777777765433 222222211100 000000
Q ss_pred HHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCcHHHHHHHHHhchhcC
Q 041804 204 KKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPS--VVTCNTVIKLLCENGRVREAYAVLAEMPKKG 277 (403)
Q Consensus 204 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 277 (403)
. .....+...|.+.|+++.|...|+.+.+..+... ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus 147 ~--------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 A--------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp H--------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred H--------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 0 0113456788899999999999999998743211 2568889999999999999999999888763
No 111
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.10 E-value=1.9e-08 Score=83.51 Aligned_cols=220 Identities=6% Similarity=-0.041 Sum_probs=180.5
Q ss_pred ccHHHHHHhhhhhcccCCCcC-CHHhHHHHHHHHHccC--ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHH----Hhc-
Q 041804 9 NDWKRALEFFNWVETDCHFTH-TTDTYNSVIDILGKFF--EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRY----VTA- 80 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~- 80 (403)
...++|++.++.+.. +.| +..+|+.--.++...| +++++++.++.+.... +.+..+|+.-...+ ...
T Consensus 47 e~s~~aL~~t~~~L~---~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 47 EYSERALHITELGIN---ELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CCSHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHH---HCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhcc
Confidence 344689999988875 334 4667888888998888 9999999999999876 45666777665555 555
Q ss_pred --CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH--HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC
Q 041804 81 --HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI--EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS 156 (403)
Q Consensus 81 --~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 156 (403)
+++++++.+++++.+.++.+..+|+.-..++...+.++ ++++.+.++.. ..+.|..+|+.-.......+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~-------~d~~N~sAW~~R~~ll~~l~ 194 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID-------TDLKNNSAWSHRFFLLFSKK 194 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHSSG
T ss_pred ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHhcc
Confidence 78999999999999999999999999998888889888 99999998887 55778888988888887777
Q ss_pred C------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhH-HHHHHHHHHHcC--CCCChhhHHHHHHHHhhcCC
Q 041804 157 W------WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWK-AVKLYKEMKKKG--IKMDVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 157 ~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~ 227 (403)
. ++++++.++++....+. |...|+-+...+.+.|+... +..+..++...+ -+.+...+..+...|.+.|+
T Consensus 195 ~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~ 273 (306)
T 3dra_A 195 HLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK 273 (306)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC
T ss_pred ccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC
Confidence 6 89999999999998888 99999999999999888554 555666655432 13467888999999999999
Q ss_pred HHHHHHHHHHHHHc
Q 041804 228 VDFAMRVYREMREM 241 (403)
Q Consensus 228 ~~~a~~~~~~~~~~ 241 (403)
.++|.++++.+.+.
T Consensus 274 ~~~A~~~~~~l~~~ 287 (306)
T 3dra_A 274 YNESRTVYDLLKSK 287 (306)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999863
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.10 E-value=1.9e-08 Score=79.73 Aligned_cols=163 Identities=10% Similarity=-0.041 Sum_probs=73.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC----CHHHHHHHHhcccccccccccccCcc
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK----HVIEAQELCFGENKNVGFSGLVEMNK 141 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (403)
+..++..+...|...+++++|+.+|++..+.+ ++..+..+...|.. + +.++|...|++.... .+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g--~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~---------g~ 84 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG--DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA---------GS 84 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT---------TC
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC---------CC
Confidence 34444444444444445555555554444422 33344444444444 3 444444444444221 22
Q ss_pred hHHHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCh
Q 041804 142 TKIYNMILRGWFK----MSWWGKCREFWEEMDKRGVV-KDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKKGIKMDV 212 (403)
Q Consensus 142 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~ 212 (403)
..++..|...|.. .+++++|.++|++..+.+.. .+..++..|...|.. .+++++|+.+|++..+. ..+.
T Consensus 85 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~ 162 (212)
T 3rjv_A 85 KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTG 162 (212)
T ss_dssp HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTT
T ss_pred HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCH
Confidence 3334444444443 44555555555555544321 013444555555554 44555555555555544 1122
Q ss_pred hhHHHHHHHHhhc------CCHHHHHHHHHHHHHcC
Q 041804 213 VAYNTVIRAVGVS------EGVDFAMRVYREMREMG 242 (403)
Q Consensus 213 ~~~~~ll~~~~~~------~~~~~a~~~~~~~~~~~ 242 (403)
..+..|...|... .+.++|...|+...+.|
T Consensus 163 ~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 163 YAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 3344444444322 14555555555555543
No 113
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.07 E-value=2.1e-08 Score=79.48 Aligned_cols=178 Identities=9% Similarity=-0.029 Sum_probs=145.2
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC----ChHHHH
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH----LVNEAM 87 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~ 87 (403)
.+|++.|+.... ..++.++..+...|...+++++|..+|++..+.+ +..++..+...|.. + ++++|+
T Consensus 3 ~eA~~~~~~aa~----~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 3 TEPGSQYQQQAE----AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp -CTTHHHHHHHH----TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred chHHHHHHHHHH----CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 357777777764 3578889999999999999999999999998864 67788888888887 6 899999
Q ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHh----cCCHHHHHHHHhcccccccccccccC-cchHHHHHHHHHHHh----cCCh
Q 041804 88 GTFNKLDEFGLKDEVSYCNLVDALCE----YKHVIEAQELCFGENKNVGFSGLVEM-NKTKIYNMILRGWFK----MSWW 158 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~ 158 (403)
++|++..+.+ ++.++..|...|.. .+++++|...|++.... +.. .+..++..|...|.. .+++
T Consensus 74 ~~~~~A~~~g--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~------~~~~~~~~a~~~Lg~~y~~g~g~~~d~ 145 (212)
T 3rjv_A 74 QLAEKAVEAG--SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD------SESDAAVDAQMLLGLIYASGVHGPEDD 145 (212)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS------TTSHHHHHHHHHHHHHHHHTSSSSCCH
T ss_pred HHHHHHHHCC--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc------CCCcchHHHHHHHHHHHHcCCCCCCCH
Confidence 9999997743 67788888888887 88999999999998875 211 236788889999988 8899
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-C-----ChhHHHHHHHHHHHcCC
Q 041804 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS-G-----KPWKAVKLYKEMKKKGI 208 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~~ 208 (403)
++|...|++..+.+ .+...+..|...|... | ++++|..+|+...+.|.
T Consensus 146 ~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 146 VKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 99999999998872 2445677787777653 3 89999999999998873
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.03 E-value=9e-09 Score=86.75 Aligned_cols=120 Identities=9% Similarity=-0.017 Sum_probs=57.4
Q ss_pred ccccHHHHHHhhhhhcccCC-----CcCC----HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCC--CC--CHHHHHHH
Q 041804 7 YANDWKRALEFFNWVETDCH-----FTHT----TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSS--IP--NHATFRIM 73 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~-----~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~l 73 (403)
.+|++++|.++++...+... +.++ ...|......|...|++++|...|.+..+.... .+ -..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46889999999987664111 1122 123444455555556666555555544331100 00 12345555
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcC----CC--cHHHHHHHHHHHHhcCCHHHHHHHHhcc
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFG----LK--DEVSYCNLVDALCEYKHVIEAQELCFGE 127 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (403)
..+|...|++++|+..|++..+.. -+ ...++..+..+|.. |++++|...+++.
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 555555555555555555543321 11 12334444444444 4444444444443
No 115
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.02 E-value=2.7e-08 Score=78.86 Aligned_cols=137 Identities=9% Similarity=-0.069 Sum_probs=109.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
.+..+...+...|++++|...|++.. .|+..+|..+..+|...|++++|+..|++..+..+.+..++..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 45567778888999999999998874 3678889999999999999999999999998888778888999999999
Q ss_pred hcCCHHHHHHHHhcccccccccc---------cccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 113 EYKHVIEAQELCFGENKNVGFSG---------LVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
..|++++|...+++.....+... ...+....++..+...|.+.|++++|.+.|++..+....
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999999888776321000 001123477888999999999999999999999887554
No 116
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.01 E-value=3.2e-07 Score=77.09 Aligned_cols=233 Identities=10% Similarity=0.021 Sum_probs=177.6
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHhhcCCCcHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH-LVNEAMGTFNKLDEFGLKDEVSYCNLVDAL 111 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 111 (403)
+++.+-....+.+..++|+++++.+...+ +-+..+|+.--..+...| .+++++.+++.+....+++..+|+.-..++
T Consensus 56 ~~~~~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 56 AMDYFRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34444444455566689999999999976 456678998888888888 599999999999999999999999988888
Q ss_pred Hhc-C-CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChh--------HHHHHHHHHHhCCCCCcHHHHH
Q 041804 112 CEY-K-HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWG--------KCREFWEEMDKRGVVKDLHSYS 181 (403)
Q Consensus 112 ~~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~ 181 (403)
... + ++++++..++++.. ..+.|..+|+.-.-...+.|.++ ++++.++++.+.++. |..+|+
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~-------~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~ 205 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLL-------PDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWG 205 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTS-------SCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 877 7 88999999999887 55778888888777777777777 899999999998877 889999
Q ss_pred HHHHHHHHcCC-------hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCH--------------------HHHHHH
Q 041804 182 IYMDIMCKSGK-------PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGV--------------------DFAMRV 234 (403)
Q Consensus 182 ~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~--------------------~~a~~~ 234 (403)
.....+.+.+. ++++++.++++.... +-|...|+.+-..+.+.|+. ......
T Consensus 206 ~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (349)
T 3q7a_A 206 WRWYLRVSRPGAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAF 284 (349)
T ss_dssp HHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC-------------
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHH
Confidence 98888888776 678899998888874 44777887766666655543 222222
Q ss_pred HHHHHHcC-----CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 235 YREMREMG-----CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 235 ~~~~~~~~-----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
...+...+ -.++......++..|...|+.++|.++++.+.+.
T Consensus 285 ~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 285 GFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp -CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222221 1356778888899999999999999999988643
No 117
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.95 E-value=2.5e-08 Score=71.54 Aligned_cols=94 Identities=9% Similarity=-0.081 Sum_probs=42.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
.+......+.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|+..|++..+.++.+..+|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD--PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34444444444444444444444444432 2234444444444444444444444444444444444444444444444
Q ss_pred hcCCHHHHHHHHhccc
Q 041804 113 EYKHVIEAQELCFGEN 128 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~ 128 (403)
..|++++|...|++..
T Consensus 93 ~~~~~~~A~~~~~~al 108 (126)
T 4gco_A 93 AMREWSKAQRAYEDAL 108 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH
Confidence 4444444444444433
No 118
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.95 E-value=1.4e-08 Score=85.49 Aligned_cols=193 Identities=8% Similarity=-0.087 Sum_probs=105.1
Q ss_pred cCChhHHHHHHHHhhhCCC---C--CCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------cHHHHHHHH
Q 041804 44 FFEFDLSWNLIHRMKDNPS---S--IPNH----ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK------DEVSYCNLV 108 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~---~--~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~ 108 (403)
.|++++|.+++++..+... . .++. ..|+.....|...|++++|...|.+..+.... -..+|..+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 83 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAG 83 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677778887776654210 0 1232 24566666777778888887777776553221 234566666
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccC-cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-----cHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEM-NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK-----DLHSYSI 182 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~ 182 (403)
.+|...|++++|...+++........ +.+ ....+++.+...|.. |++++|.+.|++..+..... ...++..
T Consensus 84 ~~~~~~g~~~~A~~~~~~Al~l~~~~--g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~ 160 (307)
T 2ifu_A 84 MMLKDLQRMPEAVQYIEKASVMYVEN--GTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGK 160 (307)
T ss_dssp HHHHHTTCGGGGHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 77777777777776666544321000 111 123455666666666 67777766666654321100 1345556
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKK----GIKMD-VVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
+..+|...|++++|+..|++.... +..+. ...+..+..++...|+++.|...|++..
T Consensus 161 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666666666666666666665543 11111 1133444445555566666666666655
No 119
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.95 E-value=8e-08 Score=80.34 Aligned_cols=166 Identities=13% Similarity=0.033 Sum_probs=122.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcch----HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-Cc--
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKT----KIYNMILRGWFKMSWWGKCREFWEEMDKRGVV-KD-- 176 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-- 176 (403)
+...+..+...|++++|...+++..... ...|+. ..+..+...+...+++++|...|++..+.... ++
T Consensus 78 l~~~i~~~~~~~~y~~a~~~~~~~l~~~-----~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKE-----EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhccc-----cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH
Confidence 3344677788899999999988876642 222332 23445777777888999999999999874322 22
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CCCCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc----CCC
Q 041804 177 --LHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-----GIKMD-VVAYNTVIRAVGVSEGVDFAMRVYREMREM----GCQ 244 (403)
Q Consensus 177 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~ 244 (403)
..+++.+..+|...|++++|+..|+++.+. +..+. ..++..+...|.+.|++++|...+++..+. +..
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~ 232 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcH
Confidence 236889999999999999999999998742 11222 237788888999999999999999988754 222
Q ss_pred CC-HHHHHHHHHHHHhcCc-HHHHHHHHHhch
Q 041804 245 PS-VVTCNTVIKLLCENGR-VREAYAVLAEMP 274 (403)
Q Consensus 245 ~~-~~~~~~li~~~~~~g~-~~~a~~~~~~~~ 274 (403)
+. ..+|..+..+|.+.|+ +++|.+.+++..
T Consensus 233 ~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 233 ALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp TTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 22 5678889999999994 699999888765
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.94 E-value=5.1e-10 Score=95.55 Aligned_cols=175 Identities=10% Similarity=0.009 Sum_probs=96.1
Q ss_pred cccHHHHHHhhhh----hcccCCCcCCHHhHHHHHHHHH------------ccCChhHHHHHHHHhhhCCCCCCCHHHHH
Q 041804 8 ANDWKRALEFFNW----VETDCHFTHTTDTYNSVIDILG------------KFFEFDLSWNLIHRMKDNPSSIPNHATFR 71 (403)
Q Consensus 8 ~~~~~~A~~~~~~----~~~~~~~~~~~~~~~~li~~~~------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 71 (403)
.+.+++|+..++. ... ++|+. .|........ ..+++++|...++...... +.+...+.
T Consensus 78 ~~~~e~al~~~~~Ge~~~l~---i~p~~-ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~--p~~a~~~~ 151 (336)
T 1p5q_A 78 PYGLERAIQRMEKGEHSIVY---LKPSY-AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEEK--LEQSTIVK 151 (336)
T ss_dssp CHHHHHHHTTCCTTCEEEEE---ECTTT-TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHHH--HHHHHHHH
T ss_pred chHHHHHHhcCCCCCeEEEE---ECCcc-ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHHH--HHHHHHHH
Confidence 4578888888776 332 23432 3322221111 3345566666665544422 12456788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCc---------------HHHHHHHHHHHHhcCCHHHHHHHHhccccccccccc
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLKD---------------EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGL 136 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 136 (403)
.+...+.+.|++++|+..|++..+..+.+ ..+|..+..++.+.|++++|...+++...
T Consensus 152 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~------- 224 (336)
T 1p5q_A 152 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE------- 224 (336)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 88999999999999999999998877664 34455555555555555555555544443
Q ss_pred ccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHH
Q 041804 137 VEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKA 196 (403)
Q Consensus 137 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 196 (403)
..+.+..++..+..+|...|++++|...|++..+..+. +...+..+..++...|+++++
T Consensus 225 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 22334444444445555555555555555544444333 334444444444444444444
No 121
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.94 E-value=4.1e-08 Score=74.23 Aligned_cols=127 Identities=12% Similarity=-0.013 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.+..+...+...|++++|...|++..+..+.+..++..+..++...|++++|...+.+... ..+.+..++..+
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~-------~~~~~~~~~~~~ 87 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIE-------LDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCcccHHHHHHH
Confidence 3444445555555555555555555554444555555555555555555555555554443 223334445555
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHH--HHHHHHHHHcCChhHHHHHHHHH
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSY--SIYMDIMCKSGKPWKAVKLYKEM 203 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~ 203 (403)
...+...|++++|.+.|++..+.... +...+ ..+...+...|++++|+..+...
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 55555555555555555555444332 22233 22222244455555555555443
No 122
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.93 E-value=1.4e-06 Score=78.12 Aligned_cols=312 Identities=6% Similarity=-0.080 Sum_probs=185.9
Q ss_pred CChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHhhc-C--CCcHHHHHHHHHHHH----hcCC
Q 041804 45 FEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL-VNEAMGTFNKLDEF-G--LKDEVSYCNLVDALC----EYKH 116 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-~--~~~~~~~~~l~~~~~----~~~~ 116 (403)
|+++.+..+|++....- |+...|..-+....+.++ .+....+|+..... | +.+...|...+..+. .+++
T Consensus 28 ~~~e~~~~iferal~~~---ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~ 104 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS---YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR 104 (493)
T ss_dssp TCHHHHHHHHHHHSTTC---CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred CCHHHHHHHHHHHhccC---CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence 88999999999999853 899999998888877764 45677788877654 3 347788888887754 3567
Q ss_pred HHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh-------------cCChhHHHHHHHHHHhCCCCCcHHHHHHH
Q 041804 117 VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK-------------MSWWGKCREFWEEMDKRGVVKDLHSYSIY 183 (403)
Q Consensus 117 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 183 (403)
.+.+.++|++.... +...-...|......-.. .+.+..|..+++.+...-...+...|...
T Consensus 105 ~~~vR~iy~rAL~~------P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y 178 (493)
T 2uy1_A 105 IEKIRNGYMRALQT------PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL 178 (493)
T ss_dssp HHHHHHHHHHHHTS------CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred HHHHHHHHHHHHhC------hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 88899999988763 111112223222221111 12233344444444321000133456555
Q ss_pred HHHHHHcC--C-----hhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 041804 184 MDIMCKSG--K-----PWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKL 256 (403)
Q Consensus 184 ~~~~~~~~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 256 (403)
+..-...+ - .+.+..+|+++... .+.+...|...+.-+.+.|+++.|..+++..... +.+...+. .
T Consensus 179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~ 251 (493)
T 2uy1_A 179 IDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----Y 251 (493)
T ss_dssp HHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----H
T ss_pred HHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----H
Confidence 55432211 1 23567889998876 3556778888888888999999999999999988 33333332 2
Q ss_pred HHhcCcHHHH-HHHHHhchhc-----CCCCC---hhhHHHHHHh---hCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 041804 257 LCENGRVREA-YAVLAEMPKK-----GCVPD---VITYHCFFRC---LEKPREILGLFDRMIESGIRPKMDTYVMLLRKF 324 (403)
Q Consensus 257 ~~~~g~~~~a-~~~~~~~~~~-----~~~p~---~~~~~~l~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 324 (403)
|+...+.++. ..+.+..... +..+. ...|...+.. .+..+.|..+|++. .. ...+...|......-
T Consensus 252 y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE 329 (493)
T 2uy1_A 252 YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIE 329 (493)
T ss_dssp HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHH
Confidence 2222111111 1111111000 00011 1223333332 35578899999988 32 122334444322222
Q ss_pred Hh-cCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 041804 325 GR-WGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEM 375 (403)
Q Consensus 325 ~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 375 (403)
.. .++.+.|..+|+...+.. +.++..|...++...+.|+.+.|..+|++.
T Consensus 330 ~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 330 YYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 337999999999998753 334667777888888999999999888875
No 123
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.92 E-value=4.6e-08 Score=81.82 Aligned_cols=171 Identities=11% Similarity=-0.063 Sum_probs=123.7
Q ss_pred HHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--c----HHHH
Q 041804 35 NSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA----TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--D----EVSY 104 (403)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~----~~~~ 104 (403)
...+..+...|++++|..+++.........|+.. .+..+...+...+++++|+..|++..+.... + ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3446778899999999999999988653334422 3345677777888999999999999885443 3 3378
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-cHHH
Q 041804 105 CNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR----GVVK-DLHS 179 (403)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~ 179 (403)
+.+..+|...|++++|...++++.......+...+....++..+...|.+.|++++|.+.+++..+. +..+ -..+
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999988774211000022233447888888888999999998888876542 2111 2567
Q ss_pred HHHHHHHHHHcCC-hhHHHHHHHHHHH
Q 041804 180 YSIYMDIMCKSGK-PWKAVKLYKEMKK 205 (403)
Q Consensus 180 ~~~l~~~~~~~~~-~~~a~~~~~~~~~ 205 (403)
|..+..+|.+.|+ +++|.+.|++...
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7888888888884 5888888877654
No 124
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.92 E-value=5e-08 Score=81.56 Aligned_cols=173 Identities=10% Similarity=-0.063 Sum_probs=123.7
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------cHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH----ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK------DEV 102 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ 102 (403)
.+...+..+...|++++|.+.+....+.....++. ..+..+...+...|++++|+..|++..+.... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 34456778889999999999999887754221211 23445666778889999999999998764332 245
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----CC-CcH
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG----VV-KDL 177 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~-~~~ 177 (403)
+++.+...|...|++++|...+++........+........++..+...|.+.|++++|.+.+++..+.. .. .-.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999887632100000101123578888999999999999999998876432 11 115
Q ss_pred HHHHHHHHHHHHcCChhHH-HHHHHHHHH
Q 041804 178 HSYSIYMDIMCKSGKPWKA-VKLYKEMKK 205 (403)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 205 (403)
.+|..+..+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 6788888888999999988 776776553
No 125
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.91 E-value=2.5e-07 Score=77.73 Aligned_cols=224 Identities=8% Similarity=-0.033 Sum_probs=174.1
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccC-ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc-C-C
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFF-EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTA-H-L 82 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~ 82 (403)
......++|+++++.+... .+-+..+|+.--.++...| .+++++..++.+.... +.+..+|+.-..++.+. + +
T Consensus 65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSC
T ss_pred HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCC
Confidence 3445567899999888752 2345677888888888888 5999999999999976 56788999888888877 7 8
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH--------HHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI--------EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
+++++++++++.+.++.+..+|+.-..++.+.+.++ ++++.+.++.. ..+.|..+|+.....+.+
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~-------~dp~N~SAW~~R~~lL~~ 213 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR-------VDGRNNSAWGWRWYLRVS 213 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHh
Confidence 999999999999999889999988777777666665 88888888877 457788899998888888
Q ss_pred cCC-------hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCh--------------------hHHHHHHHHHHHcC
Q 041804 155 MSW-------WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP--------------------WKAVKLYKEMKKKG 207 (403)
Q Consensus 155 ~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~ 207 (403)
.+. ++++++.+++.....+. |...|+-+-..+.+.|+. ........++...+
T Consensus 214 l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 214 RPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp STTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 876 68899999999988777 889999888888777765 12222222222221
Q ss_pred -----CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 208 -----IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 208 -----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
-.++......++..|...|+.++|.++++.+.+.
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1357778889999999999999999999998754
No 126
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.91 E-value=1.2e-08 Score=84.77 Aligned_cols=194 Identities=7% Similarity=0.014 Sum_probs=103.2
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
+...+..+...+...|++++|+..|++..+..+.+...+..+..++...|++++|...+++... ..+.+...+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~ 75 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-------LDGQSVKAH 75 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-------SCTTCHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCCCCHHHH
Confidence 3445556666666666666666666666666655666666666666666666666666666555 234455566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS 225 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 225 (403)
..+..+|...|++++|...|++..+.++. +...+...+....+. .+... +........+.+......+ ..+ ..
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~ 148 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IA 148 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HH
Confidence 66666666667777776666665543211 000111111111111 11111 1222223333344433333 222 25
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhc-CcHHHHHHHHHhchh
Q 041804 226 EGVDFAMRVYREMREMGCQPSV-VTCNTVIKLLCEN-GRVREAYAVLAEMPK 275 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~-g~~~~a~~~~~~~~~ 275 (403)
|+.+.|.+.++...+. .|+. .....+...+.+. +.+++|.++|....+
T Consensus 149 ~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 149 AERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 7777887777766654 3433 3333333334443 567888888887764
No 127
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.90 E-value=4.3e-08 Score=70.94 Aligned_cols=96 Identities=7% Similarity=-0.095 Sum_probs=46.8
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|+..+++..+..+.+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRN--PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4444455555555555555555555554432 22344444555555555555555555555554444444444444444
Q ss_pred HHhcCCHHHHHHHHhccc
Q 041804 111 LCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~ 128 (403)
+...|++++|...+++..
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 444445444444444433
No 128
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.90 E-value=5.5e-08 Score=73.49 Aligned_cols=131 Identities=9% Similarity=-0.055 Sum_probs=109.3
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|+..|++..+..+.+..++..+..+
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4567888889999999999999999988865 35688899999999999999999999999999887789999999999
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHH--HHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY--NMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
+...|++++|...+++.... .+.+...+ ......+.+.|++++|.+.+.....
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKV-------KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999988763 23344444 3444447788999999998877643
No 129
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.90 E-value=3.8e-08 Score=70.60 Aligned_cols=105 Identities=10% Similarity=0.021 Sum_probs=91.1
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
|..+.+.|++++|++.|+..... .+.+..+|..+..++.+.|++++|+..|++..+.+ +.+..+|..+..++...|
T Consensus 20 G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~ 95 (126)
T 4gco_A 20 GNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD--SKFIKGYIRKAACLVAMR 95 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh--hhhhHHHHHHHHHHHHCC
Confidence 34567889999999999998752 24568899999999999999999999999999875 456889999999999999
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
++++|++.|++..+..|.+..++..+..+
T Consensus 96 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 96 EWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999998888887776543
No 130
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.90 E-value=4.1e-08 Score=79.68 Aligned_cols=189 Identities=7% Similarity=-0.110 Sum_probs=131.1
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCHHHHHHH-------HHHHHhcCChHHHHHHHHHHhhcCCC------c---------
Q 041804 43 KFFEFDLSWNLIHRMKDNPSSIPNHATFRIM-------FKRYVTAHLVNEAMGTFNKLDEFGLK------D--------- 100 (403)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~------~--------- 100 (403)
..++...|.+.|.+..... +-....|..+ ...+.+.++..+++..+..-....+. +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence 5799999999999999876 3456788877 56666766677777777766552221 1
Q ss_pred ------HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 101 ------EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 101 ------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
......+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+...... .
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d 166 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-D 166 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-C
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-C
Confidence 234455667778888999998888887763 2332266666678888888888888887554431 1
Q ss_pred Cc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--hhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 175 KD--LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD--VVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 175 ~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
|. ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23667777788888888888888888775433243 2345556667777888888888888888763
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.89 E-value=7.4e-08 Score=68.73 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.|..+...+...|++++|++.|+++.+..+.+..++..+..++...|++++|...++++.. ..+.+..++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~l 83 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------LDPNNAEAWYNL 83 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-------hCCccHHHHHHH
Confidence 3444444444444444444444444443333334444444444444444444444443332 112223333444
Q ss_pred HHHHHhcCChhHHHHHHHHHHh
Q 041804 149 LRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
...+...|++++|...|+++.+
T Consensus 84 a~~~~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 84 GNAYYKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444444433
No 132
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.89 E-value=4.5e-08 Score=70.54 Aligned_cols=115 Identities=11% Similarity=0.040 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.+..+...+...|++++|+..|++.....+.+...+..+..++...|++++|...+.+... ..+.+..++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~ 86 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAIC-------IDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHh-------cCccCHHHHHHH
Confidence 3333444444444444444444444443333344444444444444444444444443333 112223334444
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG 191 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 191 (403)
...+...|++++|.+.|++..+..+. +...+..+..++...|
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLR 128 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHh
Confidence 44444444444444444444433222 3333444444444333
No 133
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.88 E-value=6.1e-08 Score=70.14 Aligned_cols=109 Identities=9% Similarity=0.038 Sum_probs=90.2
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~~~ 99 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--PTFIKGYTRKAAALEAMKD 99 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHHhh
Confidence 3456789999999999988742 34467888999999999999999999999988865 3567888899999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK 115 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (403)
+++|++.|++..+..+.+...+..+..++...|
T Consensus 100 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 100 YTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 999999999998887767778888777776655
No 134
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.88 E-value=3.1e-08 Score=76.00 Aligned_cols=84 Identities=5% Similarity=0.021 Sum_probs=37.0
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH-HHhcCCH--HH
Q 041804 43 KFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA-LCEYKHV--IE 119 (403)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~~ 119 (403)
..|++++|...++...... +.+...|..+..+|...|++++|+..|++..+..+.+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 4445555555555444432 23344455555555555555555555555554444444444444444 3344444 44
Q ss_pred HHHHHhccc
Q 041804 120 AQELCFGEN 128 (403)
Q Consensus 120 a~~~~~~~~ 128 (403)
|...+++..
T Consensus 100 A~~~~~~al 108 (177)
T 2e2e_A 100 TRAMIDKAL 108 (177)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444433
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.87 E-value=5.3e-09 Score=89.22 Aligned_cols=149 Identities=9% Similarity=-0.055 Sum_probs=125.7
Q ss_pred cccHHHHHHhhhhhcccCCCcC-CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC----------------HHHH
Q 041804 8 ANDWKRALEFFNWVETDCHFTH-TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN----------------HATF 70 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~ 70 (403)
.+++++|++.|+.... ..| +...+..+...+.+.|++++|+..|++..+.. |+ ..+|
T Consensus 126 L~~~~~A~~~~~~a~~---~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~~~~~ 199 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSE---EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL---EYESSFSNEEAQKAQALRLASH 199 (336)
T ss_dssp EEEEECCCCGGGCCHH---HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT---TTCCCCCSHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh---hccccCChHHHHHHHHHHHHHH
Confidence 3566677777766543 133 46788899999999999999999999998865 33 4789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 71 RIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 71 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
..+..+|.+.|++++|+..|++..+..+.+..++..+..++...|++++|...|++... ..+.+..++..+..
T Consensus 200 ~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~a~~~l~~ 272 (336)
T 1p5q_A 200 LNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQ-------LYPNNKAAKTQLAV 272 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCSSCHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------HCCCCHHHHHHHHH
Confidence 99999999999999999999999999988999999999999999999999999999887 44667788999999
Q ss_pred HHHhcCChhHH-HHHHHHHH
Q 041804 151 GWFKMSWWGKC-REFWEEMD 169 (403)
Q Consensus 151 ~~~~~~~~~~a-~~~~~~~~ 169 (403)
.+.+.|+++++ ...+..|.
T Consensus 273 ~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 273 CQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999988 44566554
No 136
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=4.3e-07 Score=71.82 Aligned_cols=129 Identities=12% Similarity=-0.100 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHH
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSI 182 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 182 (403)
.+..+...+...|++++|...+++.. .|+..++..+...|...|++++|.+.|++..+.... +...|..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~ 76 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQ 76 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHH
Confidence 45566777888899999999888764 246678888899999999999999999988877654 6778888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCC--------------C-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 183 YMDIMCKSGKPWKAVKLYKEMKKKGIK--------------M-DVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 183 l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
+..+|...|++++|...|+...+.... | ....+..+..++...|+++.|...|+...+..
T Consensus 77 lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 77 RGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 888999999999999999988875311 1 12567778888888888888888888888753
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.85 E-value=3.9e-08 Score=77.19 Aligned_cols=160 Identities=8% Similarity=-0.025 Sum_probs=96.9
Q ss_pred HccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhc----CC-C-cHHHHHHHHHHHHhcC
Q 041804 42 GKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEF----GL-K-DEVSYCNLVDALCEYK 115 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~~l~~~~~~~~ 115 (403)
...|++++|.++++.+... ......++..+...+...|++++|+..+++..+. +. + ...++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH--PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHTS--TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcCC--hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 3456777777744444332 1234556777777777777777777777776551 11 1 5566777778888888
Q ss_pred CHHHHHHHHhcccccccccccc-cC-cchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---CCCc--HHHHHHHHHHHH
Q 041804 116 HVIEAQELCFGENKNVGFSGLV-EM-NKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG---VVKD--LHSYSIYMDIMC 188 (403)
Q Consensus 116 ~~~~a~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~--~~~~~~l~~~~~ 188 (403)
++++|...+++........ + .+ ....++..+...+...|++++|...+++..... ..+. ..++..+..++.
T Consensus 81 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 158 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASL--PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQ 158 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 8888888777655431100 1 11 224456777778888888888888887765321 1111 233566667777
Q ss_pred HcCChhHHHHHHHHHHH
Q 041804 189 KSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~ 205 (403)
..|++++|.+.+++..+
T Consensus 159 ~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 159 QEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHH
Confidence 77777777777766554
No 138
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.85 E-value=9.3e-09 Score=85.37 Aligned_cols=196 Identities=8% Similarity=-0.057 Sum_probs=133.3
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
.+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|.+.|++++|+..+++..+..+.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 356778888999999999999999999998865 347888999999999999999999999999999888999999999
Q ss_pred HHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMC 188 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 188 (403)
.++...|++++|...+.+.....+.. ........+..+ .. ..+. -+..........+......+.. +
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~--~~~~~~~~~~~~--~~------~~~~-~~~~~~~~~~~~~~~i~~~l~~-l- 146 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQ--RLNFGDDIPSAL--RI------AKKK-RWNSIEERRIHQESELHSYLTR-L- 146 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHT--TCCCCSHHHHHH--HH------HHHH-HHHHHHHTCCCCCCHHHHHHHH-H-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccc--hhhHHHHHHHHH--HH------HHHH-HHHHHHHHHHhhhHHHHHHHHH-H-
Confidence 99999999999999998876532100 000011111111 11 1111 1222333333334444444433 2
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChh-hHHHHHHHHhhc-CCHHHHHHHHHHHHHc
Q 041804 189 KSGKPWKAVKLYKEMKKKGIKMDVV-AYNTVIRAVGVS-EGVDFAMRVYREMREM 241 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~-~~~~~a~~~~~~~~~~ 241 (403)
..|++++|++.++...+. .|+.. ....+...+.+. +.+++|.++|..+.+.
T Consensus 147 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 147 IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 368889998888877765 44443 333333334444 5678888888877653
No 139
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.85 E-value=6.3e-08 Score=71.67 Aligned_cols=101 Identities=9% Similarity=-0.063 Sum_probs=69.7
Q ss_pred CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHH
Q 041804 139 MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTV 218 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 218 (403)
|.+...+..+...+.+.|++++|...|++....++. +...|..+..+|...|++++|+..|++..+.. +-+...+..+
T Consensus 33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~l 110 (151)
T 3gyz_A 33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHH
Confidence 344556666677777777777777777777766555 66677777777777777777777777777663 3345566667
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc
Q 041804 219 IRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 219 l~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
..+|...|++++|...|+...+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777777777777777777765
No 140
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.85 E-value=8.6e-08 Score=68.36 Aligned_cols=115 Identities=14% Similarity=0.074 Sum_probs=96.3
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+..+...+...|++++|.++++++.... +.+..++..+...+...|++++|+..|+++.+..+.+..++..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 5678889999999999999999999998765 35678899999999999999999999999999887788999999999
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
+...|++++|...+++.... .+.+...+..+...+..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALEL-------DPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHh
Confidence 99999999999999987763 24445555555554443
No 141
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.85 E-value=5.7e-08 Score=69.96 Aligned_cols=122 Identities=10% Similarity=-0.029 Sum_probs=104.0
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
+.+...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|+..+++..+..+.+...+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 86 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRM 86 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHH
Confidence 3456778888999999999999999999988764 35678899999999999999999999999999887788999999
Q ss_pred HHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCCh
Q 041804 108 VDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 158 (403)
..++...|++++|...+++.... .+.+...+..+...+.+.|++
T Consensus 87 ~~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 87 GLALSSLNKHVEAVAYYKKALEL-------DPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhc-------CccchHHHHHHHHHHHHHhcC
Confidence 99999999999999999988763 345667778888888777664
No 142
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.84 E-value=3.3e-07 Score=74.41 Aligned_cols=194 Identities=8% Similarity=-0.099 Sum_probs=147.2
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHH-------HHHHHccCChhHHHHHHHHhhhCCCCCCC-------------
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSV-------IDILGKFFEFDLSWNLIHRMKDNPSSIPN------------- 66 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 66 (403)
+.+++..|.+.|..+... .+-....|..+ ..++.+.++..++...+..-.... |+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~---p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQIS---MSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCC---GGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCC---hhhhhhhhccCCccc
Confidence 468999999999999862 23347788887 567777777777777776665521 21
Q ss_pred ---------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccc
Q 041804 67 ---------HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLV 137 (403)
Q Consensus 67 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 137 (403)
...+-.....+...|++++|.++|+.+...++.+. ....+...+.+.+++++|+..|...... .
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~------~ 165 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW------P 165 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC------S
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc------C
Confidence 22344567888899999999999999988775566 7777777899999999999999865442 1
Q ss_pred cCc--chHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh
Q 041804 138 EMN--KTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK--DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVV 213 (403)
Q Consensus 138 ~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 213 (403)
.| ...++..+..++...|++++|++.|++.......| ..........++.+.|+.++|..+|+++... .|+..
T Consensus 166 -d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~ 242 (282)
T 4f3v_A 166 -DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPK 242 (282)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHH
T ss_pred -CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH
Confidence 12 13478888999999999999999999998654324 3446777788899999999999999999987 45533
Q ss_pred hH
Q 041804 214 AY 215 (403)
Q Consensus 214 ~~ 215 (403)
..
T Consensus 243 ~~ 244 (282)
T 4f3v_A 243 VA 244 (282)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 143
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.83 E-value=1.1e-06 Score=73.33 Aligned_cols=170 Identities=7% Similarity=-0.144 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH------HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc
Q 041804 68 ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE------VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK 141 (403)
Q Consensus 68 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (403)
..+...+..+...|++++|++.+.+..+...... ..+..+...+...|++++|...+++......... .....
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-DVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-CTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-chHHH
Confidence 3445566667777777777777777666543311 1233344455566666666666655443210000 00011
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHh---CCC-CC--cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC----CCC-
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDK---RGV-VK--DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG----IKM- 210 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~- 210 (403)
..+++.+...|...|++++|...|++..+ ... .+ ...++..+..+|...|++++|+..+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 33566666666666666666666665542 111 11 11355555566666666666666665554321 000
Q ss_pred ChhhHHHHHHHHhhcCCHHHH-HHHHHHH
Q 041804 211 DVVAYNTVIRAVGVSEGVDFA-MRVYREM 238 (403)
Q Consensus 211 ~~~~~~~ll~~~~~~~~~~~a-~~~~~~~ 238 (403)
-..+|..+..+|.+.|+.++| ...++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 023444455555555555555 4444443
No 144
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.83 E-value=1.8e-08 Score=74.58 Aligned_cols=99 Identities=10% Similarity=-0.088 Sum_probs=91.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
+...+..+...+.+.|++++|+..|++..... +.+...|..+..+|...|++++|+..|++..+..+.++..|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD--FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHH
Confidence 46688899999999999999999999999876 4578899999999999999999999999999999889999999999
Q ss_pred HHHhcCCHHHHHHHHhccccc
Q 041804 110 ALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~ 130 (403)
++...|++++|...|++....
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999988764
No 145
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.82 E-value=2.6e-08 Score=73.79 Aligned_cols=57 Identities=11% Similarity=-0.093 Sum_probs=23.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFG 126 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (403)
+..+...+...|++++|+..|++.....+.+...|..+..++...|++++|...+++
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 80 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSY 80 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 333333444444444444444444443333334444444444444444444444333
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.82 E-value=5.2e-08 Score=76.43 Aligned_cols=162 Identities=8% Similarity=-0.043 Sum_probs=118.5
Q ss_pred cccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhcC
Q 041804 6 CYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDN----PSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 6 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~ 81 (403)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++.... +..+....++..+...+...|
T Consensus 3 ~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ----CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 357999999996665543 12235778999999999999999999999987761 101223567888999999999
Q ss_pred ChHHHHHHHHHHhhc---CC--C--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 82 LVNEAMGTFNKLDEF---GL--K--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~---~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
++++|+..+++..+. .. + ...++..+...+...|++++|...+++........+ .......++..+...+..
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~ 159 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQ 159 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHH
Confidence 999999999987765 21 1 355688899999999999999999988764311000 111223456888899999
Q ss_pred cCChhHHHHHHHHHHh
Q 041804 155 MSWWGKCREFWEEMDK 170 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~ 170 (403)
.|++++|.+.+++..+
T Consensus 160 ~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 160 EKNLLEAQQHWLRARD 175 (203)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999987754
No 147
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=2.9e-08 Score=76.15 Aligned_cols=118 Identities=8% Similarity=-0.039 Sum_probs=59.6
Q ss_pred cccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHH-HHhcCCh--H
Q 041804 8 ANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKR-YVTAHLV--N 84 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~--~ 84 (403)
.|++++|++.|+..... .+.+...+..+..++...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcchH
Confidence 45555555555554431 12344555555555555555555555555555433 2344445555555 4455555 5
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
+|+..|++..+..+.+...+..+..++...|++++|...+++...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 555555555555544555555555555555555555555554443
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.81 E-value=6.2e-08 Score=71.74 Aligned_cols=100 Identities=8% Similarity=-0.064 Sum_probs=90.9
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLV 108 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 108 (403)
.+...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|+..|++.....+.++..+..+.
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg 96 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD--HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA 96 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 356678888999999999999999999998865 457889999999999999999999999999999988999999999
Q ss_pred HHHHhcCCHHHHHHHHhccccc
Q 041804 109 DALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
.++...|++++|...|++....
T Consensus 97 ~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 97 ECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999887764
No 149
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.75 E-value=1.5e-08 Score=79.39 Aligned_cols=144 Identities=11% Similarity=0.065 Sum_probs=67.9
Q ss_pred HHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcH----------------HHH
Q 041804 41 LGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDE----------------VSY 104 (403)
Q Consensus 41 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----------------~~~ 104 (403)
....|+++++.+.++.-.... ......+..+...+...|++++|+..|++..+..+.+. .++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 334455555555554332211 12344566677777777888888888877776554432 444
Q ss_pred HHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHH
Q 041804 105 CNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYM 184 (403)
Q Consensus 105 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 184 (403)
..+..++...|++++|...+++... ..+.+..++..+..+|...|++++|.+.|++..+..+. +...+..+.
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 163 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLK-------IDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSYE 163 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHH-------hCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHH
Confidence 4444455555555555555444443 12333444444444455555555555555444443322 333444444
Q ss_pred HHHHHcCChh
Q 041804 185 DIMCKSGKPW 194 (403)
Q Consensus 185 ~~~~~~~~~~ 194 (403)
.++...++.+
T Consensus 164 ~~~~~~~~~~ 173 (198)
T 2fbn_A 164 LCVNKLKEAR 173 (198)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444333333
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.75 E-value=2.3e-07 Score=66.47 Aligned_cols=94 Identities=12% Similarity=-0.092 Sum_probs=45.3
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+.++.+...+..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34444444555555555555555444432 2234444455555555555555555555555444444444444444444
Q ss_pred hcCCHHHHHHHHhccc
Q 041804 113 EYKHVIEAQELCFGEN 128 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~ 128 (403)
..|++++|...+++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 5555555444444433
No 151
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=2.4e-07 Score=66.46 Aligned_cols=105 Identities=10% Similarity=0.030 Sum_probs=88.2
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+..... .+.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..++...|+
T Consensus 12 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~ 87 (126)
T 3upv_A 12 KEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD--PNFVRAYIRKATAQIAVKE 87 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhC
Confidence 4566789999999999998852 24568899999999999999999999999999875 3567889999999999999
Q ss_pred hHHHHHHHHHHhhcC------CCcHHHHHHHHHHH
Q 041804 83 VNEAMGTFNKLDEFG------LKDEVSYCNLVDAL 111 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~ 111 (403)
+++|+..|++..+.. +.+...+..+..+.
T Consensus 88 ~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 88 YASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 999999999999877 55666666655543
No 152
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.73 E-value=5.3e-07 Score=63.41 Aligned_cols=91 Identities=12% Similarity=-0.078 Sum_probs=36.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
+..+...+...|++++|...|+...... +.+...+..+..++...|++++|...+++..+..+.+...+..+..++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLD--PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3334444444444444444444443322 12333344444444444444444444444444333333333344444444
Q ss_pred cCCHHHHHHHHhc
Q 041804 114 YKHVIEAQELCFG 126 (403)
Q Consensus 114 ~~~~~~a~~~~~~ 126 (403)
.|++++|...+++
T Consensus 85 ~~~~~~A~~~~~~ 97 (118)
T 1elw_A 85 LNRFEEAKRTYEE 97 (118)
T ss_dssp TTCHHHHHHHHHH
T ss_pred HhhHHHHHHHHHH
Confidence 4444444443333
No 153
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.73 E-value=3.8e-08 Score=77.03 Aligned_cols=156 Identities=11% Similarity=-0.057 Sum_probs=112.1
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC--------------HHHHHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN--------------HATFRI 72 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~~~ 72 (403)
..++++.+.+.++....+ .......+..+...+.+.|++++|...|++.....+..|+ ..+|..
T Consensus 16 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN 93 (198)
T ss_dssp ------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence 346677777777644321 1223557788889999999999999999999875422221 278889
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 73 MFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 73 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
+..+|...|++++|+..+++..+..+.+..++..+..++...|++++|...|++... ..+.+..++..+..++
T Consensus 94 la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 94 LATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS-------LNPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-------HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH-------HCCCcHHHHHHHHHHH
Confidence 999999999999999999999999888999999999999999999999999998876 3355677788888888
Q ss_pred HhcCChhHHH-HHHHHHHhC
Q 041804 153 FKMSWWGKCR-EFWEEMDKR 171 (403)
Q Consensus 153 ~~~~~~~~a~-~~~~~~~~~ 171 (403)
...++..++. ..|..+...
T Consensus 167 ~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp HHHHHHHC------------
T ss_pred HHHHHHHHHHHHHHHHHhcc
Confidence 7777777666 455555443
No 154
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.71 E-value=9.2e-08 Score=70.32 Aligned_cols=97 Identities=5% Similarity=-0.082 Sum_probs=55.2
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
...+..+...+.+.|++++|...|+...... +.+...|..+..++...|++++|+..|++....++.++..+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 3444455555556666666666666555543 23455555555666666666666666666665555555555555566
Q ss_pred HHhcCCHHHHHHHHhcccc
Q 041804 111 LCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (403)
+...|++++|...|++...
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 6666666666555555443
No 155
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.69 E-value=3.7e-05 Score=64.35 Aligned_cols=170 Identities=10% Similarity=-0.018 Sum_probs=118.9
Q ss_pred HccCChh-HHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 42 GKFFEFD-LSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL----------VNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 42 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
.+.|.++ +|+++++.+...+ +-+..+|+.--..+...+. +++++.+++.+....+.+..+|+.-..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3556654 7899999998876 3445567765444444333 5788888888888888888888888888
Q ss_pred HHhcC--CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 111 LCEYK--HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW-WGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 111 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
+...+ .+++++..+.++.. ..+.|..+|+.-.......|. ++++++.++.+.+.++. |..+|+.....+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~-------~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll 189 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLE-------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLL 189 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHH
T ss_pred HhccCcccHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence 77777 47888888888777 456777888877777777777 58888888888887777 777887777666
Q ss_pred HHc--------------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 188 CKS--------------GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 188 ~~~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
... +.++++++.+....... +-|...|+-+-..+
T Consensus 190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 655 23556666666666553 33555555443333
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.69 E-value=7e-07 Score=62.77 Aligned_cols=104 Identities=10% Similarity=-0.041 Sum_probs=87.9
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+..... .+.+...+..+..++...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 12 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~ 87 (118)
T 1elw_A 12 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK--PDWGKGYSRKAAALEFLNR 87 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhh
Confidence 3456789999999999998752 24468889999999999999999999999998865 3467889999999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
+++|...|++..+.++.+...+..+..+
T Consensus 88 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 88 FEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 9999999999999887777777666554
No 157
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.68 E-value=3.6e-07 Score=67.06 Aligned_cols=98 Identities=7% Similarity=-0.100 Sum_probs=81.5
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
..+...|++++|++.|+.+... .+.+...|..+..++.+.|++++|+..|++..... +.+...+..+..+|...|+
T Consensus 26 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD--INEPRFPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTC
T ss_pred HHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCC
Confidence 3556789999999999998752 24568889999999999999999999999999875 3566788899999999999
Q ss_pred hHHHHHHHHHHhhcCCCcHHHH
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSY 104 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~ 104 (403)
+++|+..|+...+..+.++...
T Consensus 102 ~~~A~~~~~~al~~~p~~~~~~ 123 (142)
T 2xcb_A 102 LDGAESGFYSARALAAAQPAHE 123 (142)
T ss_dssp HHHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHHHHHhCCCCcchH
Confidence 9999999999988765544433
No 158
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.66 E-value=1.2e-05 Score=67.21 Aligned_cols=218 Identities=6% Similarity=-0.059 Sum_probs=158.4
Q ss_pred ccH-HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCC----------hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHH
Q 041804 9 NDW-KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFE----------FDLSWNLIHRMKDNPSSIPNHATFRIMFKRY 77 (403)
Q Consensus 9 ~~~-~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 77 (403)
|.+ ++|++.++.+.. -.+-+..+|+.--.++...+. +++++.+++.+.... +.+..+|+.-..++
T Consensus 43 ~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~wlL 118 (331)
T 3dss_A 43 GELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLL 118 (331)
T ss_dssp TCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Confidence 444 478999988884 223345667766666555444 688999999998865 56888999988888
Q ss_pred HhcCC--hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC-HHHHHHHHhcccccccccccccCcchHHHHHHHHHHHh
Q 041804 78 VTAHL--VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH-VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFK 154 (403)
Q Consensus 78 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 154 (403)
.+.++ +++++.+++++.+.++.+..+|+.-..++...|. ++++++.+.++.. ..+.|..+|+.....+.+
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~-------~~p~N~SAW~~R~~ll~~ 191 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-------RNFSNYSSWHYRSCLLPQ 191 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH-------HCSCCHHHHHHHHHHHHH
T ss_pred hccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-------HCCCCHHHHHHHHHHHHH
Confidence 88884 8999999999999999999999998888888888 5899999888887 457788888877777665
Q ss_pred c--------------CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc-----------CChhHHHHHHHHHHHcCCC
Q 041804 155 M--------------SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS-----------GKPWKAVKLYKEMKKKGIK 209 (403)
Q Consensus 155 ~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~ 209 (403)
. +.++++++.+.......+. |..+|+-+-..+.+. +.++++++.++++.+. .
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~ 268 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--E 268 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--C
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--C
Confidence 5 4578899999999888777 888888666555554 3456777777777765 3
Q ss_pred CChhhHHHHH-----HHHhhcCCHHHHHHHHHHHHHc
Q 041804 210 MDVVAYNTVI-----RAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 210 ~~~~~~~~ll-----~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
||. .|..+. ......+..+++...+.++.+.
T Consensus 269 pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 269 PEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp TTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred ccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 443 232211 1122345556666666666654
No 159
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.65 E-value=2.4e-07 Score=66.52 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHH
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
..++..+...+.+.|++++|+..|++..+..+.+..+|..+..+|...|++++|+..+++.....+........-..+|.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34677788888888888888888888888887788888888888888888888888887765431000000001123566
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
.+..++...|++++|.+.|++....
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6677777778888888887777664
No 160
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.64 E-value=1.3e-06 Score=64.40 Aligned_cols=99 Identities=10% Similarity=-0.131 Sum_probs=89.9
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN----HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS 103 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 103 (403)
+.+...+..+...+...|++++|...|++..+.. |+ ...|..+..+|...|++++|+..+++..+..+.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHH
Confidence 3467788999999999999999999999999865 65 6788899999999999999999999999988778999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
+..+..++...|++++|...+++...
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999999999998876
No 161
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.63 E-value=4.9e-07 Score=68.20 Aligned_cols=101 Identities=13% Similarity=-0.034 Sum_probs=90.9
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
+.+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..|++..+..+.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 3456788899999999999999999999998865 34788899999999999999999999999999998899999999
Q ss_pred HHHHHhcCCHHHHHHHHhccccc
Q 041804 108 VDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
..++...|++++|...|++....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999988764
No 162
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.62 E-value=6.3e-07 Score=65.16 Aligned_cols=101 Identities=9% Similarity=-0.111 Sum_probs=91.7
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNL 107 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 107 (403)
+.+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|+..|++..+..+.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 4567889999999999999999999999988865 35678999999999999999999999999999988899999999
Q ss_pred HHHHHhcCCHHHHHHHHhccccc
Q 041804 108 VDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
..++...|++++|...+.+....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999887654
No 163
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.62 E-value=6.9e-07 Score=79.94 Aligned_cols=121 Identities=8% Similarity=-0.030 Sum_probs=100.9
Q ss_pred CcccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhc
Q 041804 1 RETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTA 80 (403)
Q Consensus 1 L~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 80 (403)
++..+...|++++|++.|+...+. .+.+..+|..+..++.+.|++++|+..+++..+.. +.+..+|..+..+|...
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--KKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHc
Confidence 355677889999999999998852 24458899999999999999999999999999975 45678999999999999
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHH--HHhcCCHHHHHHHHh
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDA--LCEYKHVIEAQELCF 125 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~a~~~~~ 125 (403)
|++++|++.|++..+..+.+...+..+..+ +.+.|++++|.+.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999887777777777766 888899999999988
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.61 E-value=6e-07 Score=67.72 Aligned_cols=102 Identities=12% Similarity=0.061 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.+...|..+...+...|++++|+..|++..+..+.+...|..+..+|...|++++|...+++... ..+.+..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~-------~~p~~~~~ 81 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV-------VDPKYSKA 81 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-------hCCCCHHH
Confidence 34567778888888888888888888888888777888888888888888888888888887776 33556777
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGV 173 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 173 (403)
|..+..+|...|++++|.+.|++..+...
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 88888888888888888888887776543
No 165
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.61 E-value=3.4e-07 Score=63.78 Aligned_cols=97 Identities=12% Similarity=-0.004 Sum_probs=48.2
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYCNLV 108 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 108 (403)
...+..+...+...|++++|...|++..+.. +.+...|..+..++...|++++|+..|++..+..+. +...+..+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLD--PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 3444445555555555555555555554432 233444555555555555555555555555554444 444455555
Q ss_pred HHHHhc-CCHHHHHHHHhcccc
Q 041804 109 DALCEY-KHVIEAQELCFGENK 129 (403)
Q Consensus 109 ~~~~~~-~~~~~a~~~~~~~~~ 129 (403)
.++... |++++|.+.+.+...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 555555 555555555444443
No 166
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.58 E-value=5.6e-07 Score=62.64 Aligned_cols=93 Identities=8% Similarity=-0.067 Sum_probs=80.6
Q ss_pred ccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC--CHHHHHHHHHHHHhc
Q 041804 3 TLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP--NHATFRIMFKRYVTA 80 (403)
Q Consensus 3 ~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 80 (403)
.++...|++++|+..|+..... .+.+...+..+..++...|++++|...+++..+.. +. +...+..+..++...
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI--EDEYNKDVWAAKADALRYI 89 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--CCTTCHHHHHHHHHHHTTC
T ss_pred HHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--cccchHHHHHHHHHHHHHH
Confidence 4566789999999999998752 24567889999999999999999999999999875 33 588999999999999
Q ss_pred -CChHHHHHHHHHHhhcCCC
Q 041804 81 -HLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 81 -~~~~~a~~~~~~~~~~~~~ 99 (403)
|++++|++.++......+.
T Consensus 90 ~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 90 EGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp SSCSHHHHHHHHHHGGGCCC
T ss_pred hCCHHHHHHHHHHHhhcccC
Confidence 9999999999999987765
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=1.9e-06 Score=63.46 Aligned_cols=100 Identities=7% Similarity=-0.087 Sum_probs=63.6
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD---EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK 141 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 141 (403)
.+...+..+...+...|++++|+..|++..+..+.+ ...+..+..++...|++++|...+++... ..+.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-------~~~~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIE-------KDGGD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HTSCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHh-------hCccC
Confidence 355667777777777777777777777777766544 55666666666666666666666665554 22334
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
...+..+..++...|++++|.+.|++..+.
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 455555566666666666666666665554
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.56 E-value=8.5e-07 Score=63.67 Aligned_cols=113 Identities=12% Similarity=0.095 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc----h
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK----T 142 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~ 142 (403)
...|..+...+...|++++|+..|++..+..+.+...+..+..++...|++++|...+++.....+ ...++ .
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~~~~~~ 79 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR----ENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----HSTTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc----ccchhHHHHH
Confidence 345667777778888888888888888777766777788888888888888888888777665310 00111 5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHH
Q 041804 143 KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMD 185 (403)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 185 (403)
.++..+...+...|++++|.+.|++..+.. |+......+..
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~ 120 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHH
Confidence 667778888888888888888888887754 34444444443
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.55 E-value=1.6e-06 Score=62.97 Aligned_cols=99 Identities=11% Similarity=0.040 Sum_probs=66.7
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHH
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKI 144 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 144 (403)
.+...|..+...+...|++++|+..|+...+..+.+...+..+..++...|++++|...+++... ..+.+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~-------~~p~~~~~ 79 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE-------LDGQSVKA 79 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-------hCchhHHH
Confidence 45666777777777777777777777777776666667777777777777777777777666655 22345556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
+..+..++...|++++|...|++..+
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 66666666666666666666666554
No 170
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=3.4e-06 Score=60.39 Aligned_cols=99 Identities=10% Similarity=0.086 Sum_probs=64.0
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCC----hhhH
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG--IKMD----VVAY 215 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~----~~~~ 215 (403)
..++..+...+.+.|++++|++.|++..+..+. +...|..+..+|...|++++|++.+++.++.. ..++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 345666777777777777777777777776555 66677777777777777777777777766542 1111 1244
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 216 NTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
..+..++...|+++.|...|++..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555566666666666666666553
No 171
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=1.1e-05 Score=71.41 Aligned_cols=171 Identities=9% Similarity=-0.070 Sum_probs=113.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc-chHHHHHHHHHHHhcCChhHHHHHHHHHHh----CCCCC-c
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN-KTKIYNMILRGWFKMSWWGKCREFWEEMDK----RGVVK-D 176 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~-~ 176 (403)
++..+...|...|++++|.+.+..+....... +... ...+.+.+-..+...|+++.|.++++.... .+..+ -
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 134 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQF--AKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLK 134 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS--CHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHH
Confidence 35667777888888888887777665432100 0011 112334444445567888898888877643 22222 3
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CC--CC-ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCC-C-C-
Q 041804 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--GI--KM-DVVAYNTVIRAVGVSEGVDFAMRVYREMREM--GCQ-P-S- 246 (403)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~--~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~- 246 (403)
..++..+...|...|++++|..+++++... +. .+ ...++..++..|...|++++|..+++..... .+. | .
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 214 (434)
T 4b4t_Q 135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT 214 (434)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH
Confidence 457788889999999999999999887654 11 11 2347788888999999999999999887653 121 1 1
Q ss_pred -HHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 247 -VVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 247 -~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
...+..+...+...|+++.|...|.+..+
T Consensus 215 ~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 215 VAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 24566667777888999999888877653
No 172
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=1e-06 Score=62.54 Aligned_cols=96 Identities=8% Similarity=-0.141 Sum_probs=86.5
Q ss_pred hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
.+..+...+.+.|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..+.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45667788999999999999999999875 3578899999999999999999999999999999889999999999999
Q ss_pred hcCCHHHHHHHHhccccc
Q 041804 113 EYKHVIEAQELCFGENKN 130 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~ 130 (403)
..|++++|...+++....
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 999999999999887653
No 173
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=2.5e-06 Score=61.15 Aligned_cols=110 Identities=10% Similarity=0.044 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCC----hhhH
Q 041804 142 TKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGI--KMD----VVAY 215 (403)
Q Consensus 142 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 215 (403)
...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...++....... .++ ..++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 345667777777788888888888877766543 566777777777778888888887777766521 111 4566
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 041804 216 NTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVI 254 (403)
Q Consensus 216 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 254 (403)
..+..++...|+++.|...|+.+.+.. |+......+.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~ 119 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence 666677777777777777777777653 3444444333
No 174
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.51 E-value=5e-06 Score=73.58 Aligned_cols=202 Identities=8% Similarity=-0.071 Sum_probs=141.6
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCC---------------HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--c
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPN---------------HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--D 100 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~ 100 (403)
...+.+.|++++|++.|..+.+......+ ..++..+...|...|++++|.+.+..+.+.-.. +
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677889999999999888875422111 124778889999999999999999887654322 2
Q ss_pred H----HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC----
Q 041804 101 E----VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG---- 172 (403)
Q Consensus 101 ~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---- 172 (403)
. .+.+.+...+...|+.+.+..++........... .......++..+...|...|++++|..+++++...-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~ 169 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK-RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD 169 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS-CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence 1 2333444445567888999888876554221100 223345678899999999999999999998875421
Q ss_pred C-CCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCC-C-C--hhhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 173 V-VKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK--GIK-M-D--VVAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 173 ~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~-~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
- .....++..++..|...|++++|..++++.... .+. | . ...+..+...+...++++.|...|....+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 113467888999999999999999999887653 122 1 1 23556666777889999999998887764
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.50 E-value=1.6e-07 Score=83.63 Aligned_cols=151 Identities=9% Similarity=-0.080 Sum_probs=116.6
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC-------------HHHHHHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN-------------HATFRIMFK 75 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~ 75 (403)
+++++|++.|+..... .+.....+..+...+.+.|++++|+..|++..+.....++ ..+|..+..
T Consensus 248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 4566666666554421 1223567888999999999999999999998885411111 578999999
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
+|.+.|++++|+..|++..+..+.+..+|..+..+|...|++++|...|++.... .+.+..++..+..++.+.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l-------~P~~~~a~~~l~~~~~~~ 398 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV-------NPQNKAARLQISMCQKKA 398 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-------C----CHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999889999999999999999999999999998773 355667788888888888
Q ss_pred CChhHHHH-HHHHH
Q 041804 156 SWWGKCRE-FWEEM 168 (403)
Q Consensus 156 ~~~~~a~~-~~~~~ 168 (403)
++++++.+ .+..|
T Consensus 399 ~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 399 KEHNERDRRIYANM 412 (457)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH
Confidence 88877653 34444
No 176
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.50 E-value=1e-06 Score=62.59 Aligned_cols=95 Identities=7% Similarity=-0.179 Sum_probs=68.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHH
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMIL 149 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 149 (403)
+..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|...+++... ..+.+..++..+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~-------l~P~~~~~~~~la 92 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM-------LDPKDIAVHAALA 92 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------hCCCCHHHHHHHH
Confidence 445566677778888888888887777766777777777777777777777777777665 3344566677777
Q ss_pred HHHHhcCChhHHHHHHHHHHhC
Q 041804 150 RGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
.++...|++++|...|++..+.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 7777777777777777776654
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.45 E-value=3.2e-06 Score=60.58 Aligned_cols=94 Identities=13% Similarity=-0.106 Sum_probs=69.7
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc---HHHHHHH
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH---ATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD---EVSYCNL 107 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~l 107 (403)
+..+...+...|++++|...|+...+.. +.+. .++..+..++...|++++|+..|++..+..+.+ ..++..+
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 4455667777888888888888877754 1222 467777778888888888888888888777665 6677778
Q ss_pred HHHHHhcCCHHHHHHHHhcccc
Q 041804 108 VDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
..++...|++++|...++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888888877765
No 178
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.43 E-value=8.9e-06 Score=58.21 Aligned_cols=93 Identities=5% Similarity=-0.123 Sum_probs=54.0
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCcH---HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc---hHHH
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLKDE---VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK---TKIY 145 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---~~~~ 145 (403)
.+...+...|++++|+..|+.+.+..+.+. ..+..+..++...|++++|...+++.... .+.+ ..++
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-------~p~~~~~~~~~ 79 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-------YPTHDKAAGGL 79 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTSTTHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-------CCCCcccHHHH
Confidence 345556666777777777776666555433 45556666666666666666666655542 1222 3445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
..+..++...|++++|...|+++.+.
T Consensus 80 ~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 80 LKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 55555566666666666666655554
No 179
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.39 E-value=1.8e-06 Score=73.60 Aligned_cols=96 Identities=13% Similarity=-0.053 Sum_probs=62.6
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHH------------------HHHHHHHHHHhcCChHHHHHHHHH
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA------------------TFRIMFKRYVTAHLVNEAMGTFNK 92 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~a~~~~~~ 92 (403)
...+..+...+.+.|++++|...|++..... |+.. .|..+..+|.+.|++++|+..|++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~ 255 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNI 255 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4456677778888888999998888877643 5443 555556666666666666666666
Q ss_pred HhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccc
Q 041804 93 LDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 93 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 129 (403)
..+..+.+..+|..+..+|...|++++|...|++...
T Consensus 256 al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 256 VLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6665555556666666666666666666666655544
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.38 E-value=7.8e-07 Score=62.74 Aligned_cols=89 Identities=6% Similarity=-0.084 Sum_probs=42.0
Q ss_pred cccHHHHHHhhhhhcccCC--CcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHH
Q 041804 8 ANDWKRALEFFNWVETDCH--FTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNE 85 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 85 (403)
.|++++|++.|+.... .+ .+.+..++..+..++...|++++|+..|++..+.. +.+..++..+..++...|++++
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHH
Confidence 3455555555555543 11 12233445555555555555555555555555443 2234445555555555555555
Q ss_pred HHHHHHHHhhcCCC
Q 041804 86 AMGTFNKLDEFGLK 99 (403)
Q Consensus 86 a~~~~~~~~~~~~~ 99 (403)
|+..|++..+..+.
T Consensus 80 A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 80 GVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhCCC
Confidence 55555555544433
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.37 E-value=8.8e-07 Score=79.24 Aligned_cols=88 Identities=10% Similarity=-0.037 Sum_probs=43.6
Q ss_pred HHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
..+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|++.+++..+..+.+..++..+..+|...|+++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 34444555555555555554432 2234455555555555555555555555555544444444555555555555555
Q ss_pred HHHHHHhccc
Q 041804 119 EAQELCFGEN 128 (403)
Q Consensus 119 ~a~~~~~~~~ 128 (403)
+|.+.+++..
T Consensus 92 eA~~~~~~al 101 (477)
T 1wao_1 92 AALRDYETVV 101 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5544444433
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.37 E-value=7.9e-07 Score=62.73 Aligned_cols=108 Identities=6% Similarity=-0.135 Sum_probs=86.9
Q ss_pred ccCChhHHHHHHHHhhhCCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHH
Q 041804 43 KFFEFDLSWNLIHRMKDNPSS-IPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQ 121 (403)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 121 (403)
..|++++|+..|++..+.+.. +.+..++..+..+|...|++++|+..|++..+..+.+..++..+..++...|++++|.
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 468999999999999986311 2345688999999999999999999999999999889999999999999999999999
Q ss_pred HHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 122 ELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
..+++..... ...|+...|...+..|.+.
T Consensus 82 ~~~~~al~~~-----p~~~~~~~~~~ai~~~~~~ 110 (117)
T 3k9i_A 82 ELLLKIIAET-----SDDETIQSYKQAILFYADK 110 (117)
T ss_dssp HHHHHHHHHH-----CCCHHHHHTHHHHHHHTTC
T ss_pred HHHHHHHHhC-----CCcHHHHHHHHHHHHHHHH
Confidence 9999877654 4566777777777777653
No 183
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=3.9e-06 Score=74.73 Aligned_cols=157 Identities=8% Similarity=-0.066 Sum_probs=83.0
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHh
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCF 125 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 125 (403)
++++|...|+...... +.....|..+...+.+.|++++|+..|++..+..+.+... ..+....
T Consensus 249 ~~~~A~~~~~~~~~~~--~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~------------~~~~~~~--- 311 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEK--LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL------------SEKESKA--- 311 (457)
T ss_dssp EEECCCCGGGSCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC------------CHHHHHH---
T ss_pred hcccCcchhhcCHHHH--HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC------------ChHHHHH---
Confidence 4455555554443321 1234578888899999999999999999988866553110 0000000
Q ss_pred cccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 126 GENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
..+....+|..+..+|.+.|++++|+..+++..+.... +..+|..+..+|...|++++|...|++..+
T Consensus 312 -----------~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 312 -----------SESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -----------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -----------HHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 00112234455555555555555555555555554433 455555555555555555555555555554
Q ss_pred cCCCCChhhHHHHHHHHhhcCCHHHHH
Q 041804 206 KGIKMDVVAYNTVIRAVGVSEGVDFAM 232 (403)
Q Consensus 206 ~~~~~~~~~~~~ll~~~~~~~~~~~a~ 232 (403)
.. +-+...+..+..++.+.++.+++.
T Consensus 380 l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 380 VN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp TC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 42 223334455555555555554443
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.35 E-value=5.2e-06 Score=71.55 Aligned_cols=137 Identities=9% Similarity=-0.050 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHH
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMI 148 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l 148 (403)
.+..+...+.+.|++++|+..|++..+.-.... .....+++. . ..+.+..+|..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~-----------~~~~~~~~~-------~-------~~~~~~~~~~nl 279 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR-----------AAAEDADGA-------K-------LQPVALSCVLNI 279 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH-----------HHSCHHHHG-------G-------GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc-----------cccChHHHH-------H-------HHHHHHHHHHHH
Confidence 466777788888888888888887765210000 000111110 0 112344556666
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCH
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGV 228 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 228 (403)
..+|.+.|++++|.+.+++..+.... +...|..+..+|...|++++|++.|++..+.. +.+...+..+..++...++.
T Consensus 280 a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~ 357 (370)
T 1ihg_A 280 GACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQ 357 (370)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHH
Confidence 66666667777777777666665443 55666666666777777777777776666652 22444555555555555555
Q ss_pred HHHH
Q 041804 229 DFAM 232 (403)
Q Consensus 229 ~~a~ 232 (403)
+++.
T Consensus 358 ~~a~ 361 (370)
T 1ihg_A 358 KDKE 361 (370)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 185
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.34 E-value=2.7e-06 Score=63.59 Aligned_cols=98 Identities=7% Similarity=-0.027 Sum_probs=63.9
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------c
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN----HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK------D 100 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~ 100 (403)
..++..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|...+++..+.... .
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 346777778888888888888888776653200111 136777778888888888888888776543211 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 101 EVSYCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
..++..+..++...|++++|...+++..
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455666666667777777766665544
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.34 E-value=4.9e-05 Score=69.32 Aligned_cols=173 Identities=10% Similarity=-0.037 Sum_probs=125.4
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL----------VNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
....++|++.++.+.... +.+..+|+.--.++...|+ ++++++.++.+.+..+++..+|..-..++.+
T Consensus 42 ~~~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 42 GELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp TCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 334567788898888865 3456678877777777766 8889999999998888888888888888888
Q ss_pred cC--CHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 114 YK--HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMS-WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 114 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
.+ +++++++.++++.+ ..+.+..+|+.-.....+.| .++++.+.++++.+.++. |..+|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~-------~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l 191 (567)
T 1dce_A 120 LPEPNWARELELCARFLE-------ADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQL 191 (567)
T ss_dssp CSSCCHHHHHHHHHHHHH-------HCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHh-------hccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhh
Confidence 88 66888888888877 44677888888877777888 788888888888887777 778888877776663
Q ss_pred --------------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC
Q 041804 191 --------------GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 191 --------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 227 (403)
+.++++++.+++..... +-|...|..+-..+.+.++
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 33455666666655542 3344555555444444443
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.33 E-value=6.6e-06 Score=61.40 Aligned_cols=137 Identities=8% Similarity=-0.077 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK------DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
..++..+...+...|++++|+..+++..+.... ...++..+...+...|++++|...+++........+ ....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~ 87 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAV 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcHH
Confidence 346777888888899999999998887664322 224666777777777888877777766544210000 0011
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHhC----CCC-CcHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDKR----GVV-KDLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (403)
...++..+...+...|++++|.+.+++..+. +.. ....++..+...+...|++++|.+.+++..
T Consensus 88 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 88 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 1334555556666666666666666554432 100 012334444555555555555555555443
No 188
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.33 E-value=4.5e-06 Score=71.95 Aligned_cols=124 Identities=6% Similarity=-0.088 Sum_probs=102.7
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhh----------------CCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKD----------------NPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLD 94 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~----------------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 94 (403)
...+..+...+.+.|++++|+..|++..+ .. +.+..+|..+..+|.+.|++++|+..+++..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~--~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ--PVALSCVLNIGACKLKMSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH--HHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34577888899999999999999998876 22 2345688999999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHH
Q 041804 95 EFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE 163 (403)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 163 (403)
+..+.+..++..+..+|...|++++|...+++.... .+.+..++..+...+...++.+++.+
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l-------~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI-------APEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 998889999999999999999999999999988763 34566677777777777776666544
No 189
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.32 E-value=5e-06 Score=62.45 Aligned_cols=100 Identities=13% Similarity=-0.032 Sum_probs=83.7
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhC--------CCC--------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHh
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDN--------PSS--------IPNHATFRIMFKRYVTAHLVNEAMGTFNKLD 94 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--------~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 94 (403)
...+......+.+.|++++|+..|...... ... +.+...|..+..+|.+.|++++|+..+++..
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888899999999999999887764 100 1234678889999999999999999999999
Q ss_pred hcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 95 EFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 95 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
+.++.+..+|..+..++...|++++|...|++....
T Consensus 91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 998889999999999999999999999999887763
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.31 E-value=5.8e-06 Score=62.07 Aligned_cols=117 Identities=11% Similarity=-0.013 Sum_probs=62.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
....+......+.+.|++++|+..|.+....-.. ............ .. ..+.+..+|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~-----------~~~~~~~~~~~~--~~----------~~~~~~~~~ 66 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDT-----------LILREKPGEPEW--VE----------LDRKNIPLY 66 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-----------HHHTSCTTSHHH--HH----------HHHTHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----------hcccCCCCHHHH--HH----------HHHHHHHHH
Confidence 3456778888999999999999999988775000 000000000000 00 112333445
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
..+..+|.+.|++++|...+++..+.++. +...|..+..+|...|++++|...|+...+.
T Consensus 67 ~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 67 ANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 55555555555555555555555554433 4455555555555555555555555555544
No 191
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.25 E-value=0.0001 Score=67.19 Aligned_cols=175 Identities=6% Similarity=-0.046 Sum_probs=145.2
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH----------VIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
...++|++.++++....+.+..+|+.--.++...++ +++++..++++.. ..+.+..+|+.-..
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~-------~~pK~y~aW~hR~w 115 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR-------VNPKSYGTWHHRCW 115 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH-------hCCCCHHHHHHHHH
Confidence 345688999999999999888999888888877777 8999999999887 55788899999999
Q ss_pred HHHhcC--ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhc--
Q 041804 151 GWFKMS--WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSG-KPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVS-- 225 (403)
Q Consensus 151 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-- 225 (403)
.+.+.+ +++++.+.++++.+.++. +..+|+.-..++.+.| .++++++.++++.+.. +-|...|+.....+.+.
T Consensus 116 ~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 116 LLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSC
T ss_pred HHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcc
Confidence 999999 679999999999999888 8999999988888989 8999999999998875 44777888777766553
Q ss_pred ------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 041804 226 ------------EGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265 (403)
Q Consensus 226 ------------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (403)
+.++++.+.++.+....+. +...|+.+-..+.+.++.++
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence 5578999999998887543 77788887777777666433
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.21 E-value=3e-06 Score=58.85 Aligned_cols=97 Identities=7% Similarity=-0.157 Sum_probs=79.8
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCc------HH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKD------EV 102 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~ 102 (403)
++...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|+..|++..+..+.+ ..
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 79 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ--PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSK 79 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHH
Confidence 346778889999999999999999999998865 4578889999999999999999999999999988776 66
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcc
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGE 127 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (403)
.+..+..++...|+.+.|...++++
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 6777777777777766665555444
No 193
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.18 E-value=1.7e-05 Score=58.09 Aligned_cols=99 Identities=13% Similarity=-0.037 Sum_probs=82.6
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC-----CH-----HHHHHHHHHHHhcCChHHHHHHHHHHhhc-----
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP-----NH-----ATFRIMFKRYVTAHLVNEAMGTFNKLDEF----- 96 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----- 96 (403)
..+......+.+.|++++|+..|++..+..+..| +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 4456677788899999999999998887551111 22 38999999999999999999999999998
Q ss_pred --CCCcHHHH----HHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 97 --GLKDEVSY----CNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 97 --~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
.+.+...| .....++...|++++|+..|++....
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 87788899 99999999999999999999887653
No 194
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.14 E-value=5.3e-06 Score=70.65 Aligned_cols=149 Identities=9% Similarity=-0.042 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHH
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYN 146 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (403)
...+..+...+.+.|++++|+..|++.....+.+. .+...++..++...+ ...+|.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l----------------~~~~~~ 234 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAV----------------KNPCHL 234 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHH----------------HTHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHH----------------HHHHHH
Confidence 34577778888899999999999999887654332 112233333333221 113577
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH-Hhhc
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRA-VGVS 225 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~ 225 (403)
.+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.. +-+...+..+... ....
T Consensus 235 nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~ 312 (338)
T 2if4_A 235 NIAACLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEK 312 (338)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHH
Confidence 7888888888888888888888776554 67788888888888888888888888876542 1233344444443 2334
Q ss_pred CCHHHHHHHHHHHHHc
Q 041804 226 EGVDFAMRVYREMREM 241 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~ 241 (403)
+..+.+..+|..+...
T Consensus 313 ~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 313 ALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ----------------
T ss_pred HHHHHHHHHHHHhhCC
Confidence 5667777778777654
No 195
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.12 E-value=7e-05 Score=66.69 Aligned_cols=63 Identities=6% Similarity=-0.102 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCC-C-cHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 143 KIYNMILRGWFKMSWWGKCREFWEEMDK-----RGVV-K-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
.+++.|...|...|++++|+.++++..+ .|.. | ...+.+.+-.++...+.+++|..+|..+++
T Consensus 394 ~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 394 MAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554444322 1211 1 223344455555666666677766666654
No 196
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.09 E-value=2.4e-05 Score=54.66 Aligned_cols=77 Identities=13% Similarity=-0.009 Sum_probs=40.0
Q ss_pred HHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 50 SWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 50 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
|+..|++..+.. +.+...+..+...|...|++++|+..|++..+..+.+...+..+..++...|++++|...+++..
T Consensus 4 a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 4 ITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp HHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444455444433 23344555555555555555555555555555554455555555555555555555555554443
No 197
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.09 E-value=5.6e-05 Score=55.39 Aligned_cols=104 Identities=13% Similarity=0.025 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-------cH-----HHHHHHHHHHHhcCCHHHHHHHHhccccccccc
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-------DE-----VSYCNLVDALCEYKHVIEAQELCFGENKNVGFS 134 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 134 (403)
...+......+...|++++|+..|++..+..+. +. ..|..+..++.+.|++++|+..+++......-.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 345667778888999999999999999887766 33 389999999999999999999877655410000
Q ss_pred ccccCcchHHH----HHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 135 GLVEMNKTKIY----NMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 135 ~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
....+.+...| .....++...|++++|+..|++..+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 00023344445 5555555555555555555555443
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.07 E-value=4.2e-05 Score=50.64 Aligned_cols=84 Identities=13% Similarity=0.087 Sum_probs=71.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
+...+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|+..|++..+..+.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD--PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 45678888899999999999999999988865 3467888999999999999999999999999988778888888877
Q ss_pred HHHhcC
Q 041804 110 ALCEYK 115 (403)
Q Consensus 110 ~~~~~~ 115 (403)
++...|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 776543
No 199
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.04 E-value=2.2e-05 Score=54.88 Aligned_cols=96 Identities=10% Similarity=-0.069 Sum_probs=75.1
Q ss_pred HHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 041804 12 KRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFN 91 (403)
Q Consensus 12 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 91 (403)
+.|++.|+.... ..+.+...+..+..++...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD--PTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 357778877764 234568899999999999999999999999998865 3567889999999999999999999999
Q ss_pred HHhhcCCC--cHHHHHHHHHHH
Q 041804 92 KLDEFGLK--DEVSYCNLVDAL 111 (403)
Q Consensus 92 ~~~~~~~~--~~~~~~~l~~~~ 111 (403)
+..+..+. +......+...+
T Consensus 78 ~al~~~~~~~~~~~~~~l~~~l 99 (115)
T 2kat_A 78 SGLAAAQSRGDQQVVKELQVFL 99 (115)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhccccccHHHHHHHHHHH
Confidence 98876543 334444443333
No 200
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.98 E-value=3.3e-05 Score=53.37 Aligned_cols=95 Identities=13% Similarity=0.028 Sum_probs=76.0
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcc---
Q 041804 65 PNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNK--- 141 (403)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 141 (403)
++...|..+...+...|++++|+..|++..+..+.+...+..+..++...|++++|...+++..... +.+
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------p~~~~~ 74 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-------STAEHV 74 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------SSTTSH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------CCccHH
Confidence 4567888899999999999999999999999988899999999999999999999999999887642 223
Q ss_pred ---hHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 142 ---TKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 142 ---~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
..++..+..++...|+++.|.+.++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 75 AIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 4455566666666666655554443
No 201
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.97 E-value=0.00011 Score=65.32 Aligned_cols=101 Identities=7% Similarity=-0.131 Sum_probs=67.5
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CC--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-----CC
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDK-----RG--VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-----GI 208 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 208 (403)
...+++.|...|...|++++|+.++++..+ .| .+-...+++.|...|...|++++|..++++..+. |.
T Consensus 350 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~ 429 (490)
T 3n71_A 350 VLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGP 429 (490)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 445677777777777777777777666543 22 2223467888999999999999999999887643 21
Q ss_pred -CCC-hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 209 -KMD-VVAYNTVIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 209 -~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
.|+ ..+...+-.++...+.+++|+.++..+++.
T Consensus 430 ~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 430 SHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 224455556666777778888887777653
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.90 E-value=9.7e-05 Score=48.77 Aligned_cols=82 Identities=16% Similarity=0.077 Sum_probs=68.7
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHH
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIY 145 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (403)
+...+..+...+...|++++|+..|++..+..+.+..++..+..++...|++++|...+++.... .+.+..++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-------~p~~~~~~ 80 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-------DPNNAEAK 80 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------CTTCHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-------CCCCHHHH
Confidence 45678889999999999999999999999988778999999999999999999999999988763 34455666
Q ss_pred HHHHHHHHh
Q 041804 146 NMILRGWFK 154 (403)
Q Consensus 146 ~~l~~~~~~ 154 (403)
..+...+.+
T Consensus 81 ~~l~~~~~~ 89 (91)
T 1na3_A 81 QNLGNAKQK 89 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666665544
No 203
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.88 E-value=0.00061 Score=49.25 Aligned_cols=111 Identities=6% Similarity=-0.076 Sum_probs=86.6
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhh----cCCHHHH
Q 041804 156 SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGV----SEGVDFA 231 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a 231 (403)
+++++|.+.|++..+.|.. +. . |...|...+.+++|+++|++..+.| +...+..|-..|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~~-~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM-FG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT-TH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH-hh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 4578889999988887733 33 2 6666777777888999999888875 56677777777777 7889999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCcHHHHHHHHHhchhcC
Q 041804 232 MRVYREMREMGCQPSVVTCNTVIKLLCE----NGRVREAYAVLAEMPKKG 277 (403)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 277 (403)
..+|+...+.| ++..+..|...|.. .++.++|...|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 99999988864 56777778888887 788888888888887765
No 204
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.86 E-value=6.9e-05 Score=50.81 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcc
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGE 127 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (403)
+...+..+..+|...|++++|+..|++..+.++.+..+|..+..+|...|++++|...+++.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34445555555555555555555555555555444445555555555555555555554443
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.84 E-value=6.6e-05 Score=50.91 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=65.0
Q ss_pred cCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC--cHHHHH
Q 041804 28 THTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK--DEVSYC 105 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 105 (403)
+.++..+..+..++.+.|++++|+..|++..+.. +.+..+|..+..+|...|++++|++.|++..+..+. +.....
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 81 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLS 81 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHH
Confidence 4467889999999999999999999999999876 345678999999999999999999999998875432 334333
Q ss_pred HHHHHH
Q 041804 106 NLVDAL 111 (403)
Q Consensus 106 ~l~~~~ 111 (403)
.+...+
T Consensus 82 ~l~~~l 87 (100)
T 3ma5_A 82 ELQDAK 87 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 333333
No 206
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.81 E-value=0.00045 Score=49.97 Aligned_cols=49 Identities=12% Similarity=0.029 Sum_probs=21.8
Q ss_pred cCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH----cCChhHHHHHHHHHHHc
Q 041804 155 MSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK----SGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 155 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~ 206 (403)
.+++++|.++|++..+.| +...+..|...|.. .+++++|..+|++..+.
T Consensus 74 ~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 344444444444444432 23344444444444 44444444444444444
No 207
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.76 E-value=0.0037 Score=52.62 Aligned_cols=143 Identities=7% Similarity=-0.110 Sum_probs=80.6
Q ss_pred CCCHHHHHHHHHHHH--hcC---ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh---cC--C---HHHHHHHHhccccc
Q 041804 64 IPNHATFRIMFKRYV--TAH---LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE---YK--H---VIEAQELCFGENKN 130 (403)
Q Consensus 64 ~~~~~~~~~l~~~~~--~~~---~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~---~~~a~~~~~~~~~~ 130 (403)
+.+..+|...+++.. ..+ +..+|+.+|++..+.+|.....+..+..+|.. .+ . .......+......
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 356666776665544 333 34789999999999888877777766665541 00 0 00000011110000
Q ss_pred ccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 041804 131 VGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKM 210 (403)
Q Consensus 131 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 210 (403)
. ..+.+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|.+.|++.... .|
T Consensus 271 ~-----~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P 341 (372)
T 3ly7_A 271 P-----ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RP 341 (372)
T ss_dssp G-----GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred c-----cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 0 234455566666555555566666666666666654 45555656666666666666666666666654 34
Q ss_pred ChhhH
Q 041804 211 DVVAY 215 (403)
Q Consensus 211 ~~~~~ 215 (403)
...+|
T Consensus 342 ~~~t~ 346 (372)
T 3ly7_A 342 GANTL 346 (372)
T ss_dssp SHHHH
T ss_pred CcChH
Confidence 44444
No 208
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.74 E-value=7.8e-05 Score=54.54 Aligned_cols=88 Identities=10% Similarity=0.015 Sum_probs=69.6
Q ss_pred HhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC----------HHHHHHHHhcccccccccccccCcchHHHHH
Q 041804 78 VTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH----------VIEAQELCFGENKNVGFSGLVEMNKTKIYNM 147 (403)
Q Consensus 78 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (403)
.+.+.+++|++.++...+..+.+...|..+..++...++ +++|+..|++... -.+.+..+|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~-------ldP~~~~A~~~ 85 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL-------IDPKKDEAVWC 85 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH-------HCTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH-------hCcCcHHHHHH
Confidence 455677888888888888888888888888888887765 4589999988887 44667788999
Q ss_pred HHHHHHhcC-----------ChhHHHHHHHHHHhCC
Q 041804 148 ILRGWFKMS-----------WWGKCREFWEEMDKRG 172 (403)
Q Consensus 148 l~~~~~~~~-----------~~~~a~~~~~~~~~~~ 172 (403)
+..+|...| ++++|.+.|++..+.+
T Consensus 86 LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 86 IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 999998775 7778888887777763
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.71 E-value=9.3e-05 Score=54.13 Aligned_cols=98 Identities=9% Similarity=0.018 Sum_probs=72.7
Q ss_pred ccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCcHHHHHHHHHHHH
Q 041804 43 KFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLV----------NEAMGTFNKLDEFGLKDEVSYCNLVDALC 112 (403)
Q Consensus 43 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 112 (403)
+.+.+++|++.++...+.. +.+...|..+..++...+++ ++|+..|++..+.++.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 3456777777777777765 34667777777777776654 59999999999999888889999999998
Q ss_pred hcC-----------CHHHHHHHHhcccccccccccccCcchHHHHHHHH
Q 041804 113 EYK-----------HVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILR 150 (403)
Q Consensus 113 ~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 150 (403)
..| ++++|.+.|++.... .|+...|...+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--------~P~~~~y~~al~ 132 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE--------QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh--------CCCCHHHHHHHH
Confidence 764 899999999988764 455544544433
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.47 E-value=0.00064 Score=45.64 Aligned_cols=83 Identities=10% Similarity=0.065 Sum_probs=63.8
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHA-TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYK 115 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 115 (403)
....+.+.|++++|...|++..+.. +.+.. .|..+..+|...|++++|+..|++..+..+.+..++.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 4567788899999999999988865 34567 88889999999999999999999999988776665532 4
Q ss_pred CHHHHHHHHhcccc
Q 041804 116 HVIEAQELCFGENK 129 (403)
Q Consensus 116 ~~~~a~~~~~~~~~ 129 (403)
.+.++...+++...
T Consensus 76 ~~~~a~~~~~~~~~ 89 (99)
T 2kc7_A 76 MVMDILNFYNKDMY 89 (99)
T ss_dssp HHHHHHHHHCCTTH
T ss_pred HHHHHHHHHHHHhc
Confidence 55666666655543
No 211
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.33 E-value=0.00075 Score=59.08 Aligned_cols=85 Identities=5% Similarity=-0.138 Sum_probs=47.1
Q ss_pred CChhHHHHHHHHhhh-----CCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHhh-----cCCC---cHHHHHHHHHH
Q 041804 45 FEFDLSWNLIHRMKD-----NPSSIPNH-ATFRIMFKRYVTAHLVNEAMGTFNKLDE-----FGLK---DEVSYCNLVDA 110 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~-----~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~---~~~~~~~l~~~ 110 (403)
|++++|+.++++..+ .|...|+. .+++.|..+|...|++++|+.++++..+ .|.. ...+++.|...
T Consensus 312 g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~ 391 (433)
T 3qww_A 312 KSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRL 391 (433)
T ss_dssp SCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHH
Confidence 455555555554432 12122332 4566666666666666666666666542 2322 44456666666
Q ss_pred HHhcCCHHHHHHHHhcccc
Q 041804 111 LCEYKHVIEAQELCFGENK 129 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~ 129 (403)
|...|++++|+.++++...
T Consensus 392 ~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 392 YMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHH
Confidence 6666766666666665543
No 212
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.24 E-value=0.014 Score=49.28 Aligned_cols=143 Identities=9% Similarity=-0.059 Sum_probs=84.3
Q ss_pred CcchHHHHHHHHHHHh--cC---ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH---cC-Ch-hHHHH---HHHHHHH
Q 041804 139 MNKTKIYNMILRGWFK--MS---WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCK---SG-KP-WKAVK---LYKEMKK 205 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~-~~-~~a~~---~~~~~~~ 205 (403)
+.+..+|...+++... .+ +..+|..+|++..+..+. ....|..+.-+|.. .+ .. ..... .++....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 4455566666655432 22 357788888888877554 44455544444431 11 11 11111 1111111
Q ss_pred -cCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhh
Q 041804 206 -KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVIT 284 (403)
Q Consensus 206 -~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 284 (403)
...+.+..++..+...+...|+++.|...++++...+ |+...|..+...+.-.|++++|.+.|++.... .|...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t 345 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANT 345 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcCh
Confidence 1124456677666666666788888888888888764 67667767777777888888888888877665 455555
Q ss_pred HH
Q 041804 285 YH 286 (403)
Q Consensus 285 ~~ 286 (403)
|.
T Consensus 346 ~~ 347 (372)
T 3ly7_A 346 LY 347 (372)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.15 E-value=0.0033 Score=55.01 Aligned_cols=65 Identities=9% Similarity=-0.026 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHhcCChhHHHHHHHHHHh-----CCC-CC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 141 KTKIYNMILRGWFKMSWWGKCREFWEEMDK-----RGV-VK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
...+++.+...|...|++++|+.++++..+ .|. .| ...+++.|...|...|++++|+.++++..+
T Consensus 339 ~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 339 MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345566777777777777777776666543 121 12 235677777788888888888888777654
No 214
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.04 E-value=0.027 Score=54.07 Aligned_cols=128 Identities=9% Similarity=0.022 Sum_probs=69.2
Q ss_pred HHHccCChhHHHH-HHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHH
Q 041804 40 ILGKFFEFDLSWN-LIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVI 118 (403)
Q Consensus 40 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 118 (403)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|+++.+. +. .-.......|+++
T Consensus 608 ~~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~---~~f~~~l~~~~~~ 669 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPD--------QD---QKFELALKVGQLT 669 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH---HHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCC--------cc---hheehhhhcCCHH
Confidence 3345677777765 44222 2122236666666777777777665521 10 1122345567777
Q ss_pred HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHH
Q 041804 119 EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVK 198 (403)
Q Consensus 119 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 198 (403)
.|.++.+.+ .+...|..+...+.+.++++.|++.|.++.. |..+...|...++.+...+
T Consensus 670 ~A~~~~~~~------------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 670 LARDLLTDE------------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHHHHHTTC------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhh------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 777765433 2345677777777777777777777776642 2233333444445444444
Q ss_pred HHHHHHHc
Q 041804 199 LYKEMKKK 206 (403)
Q Consensus 199 ~~~~~~~~ 206 (403)
+-+.....
T Consensus 729 ~~~~a~~~ 736 (814)
T 3mkq_A 729 LAKDAETT 736 (814)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 44444433
No 215
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.03 E-value=0.0054 Score=41.60 Aligned_cols=79 Identities=11% Similarity=0.005 Sum_probs=63.8
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCC-----CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHH
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNP-----SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVS 103 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 103 (403)
.+...+..+...+.+.|++..|..+|+...+.. ...+....+..+..++.+.|+++.|+..+++..+..|.+..+
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 456677889999999999999999998876531 113456788999999999999999999999999988777666
Q ss_pred HHHH
Q 041804 104 YCNL 107 (403)
Q Consensus 104 ~~~l 107 (403)
.+.+
T Consensus 83 ~~n~ 86 (104)
T 2v5f_A 83 NGNL 86 (104)
T ss_dssp HHHH
T ss_pred HhhH
Confidence 5544
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.02 E-value=0.011 Score=38.92 Aligned_cols=68 Identities=6% Similarity=-0.085 Sum_probs=52.3
Q ss_pred CcchHHHHHHHHHHHhcCC---hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 041804 139 MNKTKIYNMILRGWFKMSW---WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKG 207 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 207 (403)
+.+...+..+..++...++ .++|..++++..+.++. +..+...+...+.+.|++++|+..|+.+.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566667777777755444 68888888888887766 77788888888888888888888888888763
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.99 E-value=0.011 Score=38.99 Aligned_cols=70 Identities=14% Similarity=0.030 Sum_probs=50.2
Q ss_pred cCCHHhHHHHHHHHHccCC---hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC
Q 041804 28 THTTDTYNSVIDILGKFFE---FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK 99 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 99 (403)
+.|+..+..+..++...++ .++|..++++..+.+ +.+..+...+...+...|++++|+..|+++.+..++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d--p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE--PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566677777776654443 678888888877765 355677777777888888888888888888777665
No 218
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.95 E-value=0.0072 Score=52.93 Aligned_cols=99 Identities=6% Similarity=-0.078 Sum_probs=70.4
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccc-cccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-CC-cHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNV-GFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR-----GV-VK-DLH 178 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~-~~~ 178 (403)
.+..+.+.|++++|+.++++..... ..-+...+....+++.+...|...|++++|+.++++.... |. .| ...
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 3455667899999999988766432 1122233445667888999999999999999888876542 21 22 235
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 179 SYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 179 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
+++.|...|...|++++|..++++..+
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 678888888888999888888887654
No 219
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.94 E-value=0.031 Score=41.51 Aligned_cols=130 Identities=8% Similarity=0.023 Sum_probs=91.2
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHV 117 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 117 (403)
.......|+++.|.++.+.+ .+...|..|.......|+++-|+++|.+... +..+.-.|...|+.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCH
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCH
Confidence 45567789999999998776 3677999999999999999999999988876 66777777788888
Q ss_pred HHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHH
Q 041804 118 IEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAV 197 (403)
Q Consensus 118 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 197 (403)
+...++-+..... + -++.....+...|+++++.++|.+.-+. |- -.-.....|..+.|.
T Consensus 77 e~L~kla~iA~~~------g------~~n~af~~~l~lGdv~~~i~lL~~~~r~---~e------A~~~A~t~g~~~~a~ 135 (177)
T 3mkq_B 77 NKLSKMQNIAQTR------E------DFGSMLLNTFYNNSTKERSSIFAEGGSL---PL------AYAVAKANGDEAAAS 135 (177)
T ss_dssp HHHHHHHHHHHHT------T------CHHHHHHHHHHHTCHHHHHHHHHHTTCH---HH------HHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHC------c------cHHHHHHHHHHcCCHHHHHHHHHHCCCh---HH------HHHHHHHcCcHHHHH
Confidence 8777664443322 1 1566667777889999998888654321 11 111112245566666
Q ss_pred HHHHHH
Q 041804 198 KLYKEM 203 (403)
Q Consensus 198 ~~~~~~ 203 (403)
++.+.+
T Consensus 136 ~~~~~~ 141 (177)
T 3mkq_B 136 AFLEQA 141 (177)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 666554
No 220
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.008 Score=40.05 Aligned_cols=58 Identities=9% Similarity=0.019 Sum_probs=52.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCcHH-HHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 73 MFKRYVTAHLVNEAMGTFNKLDEFGLKDEV-SYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 73 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
....+...|++++|+..|++..+..+.+.. .+..+..++...|++++|...|++....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 456788899999999999999999888888 9999999999999999999999988764
No 221
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.89 E-value=0.076 Score=42.99 Aligned_cols=91 Identities=11% Similarity=0.026 Sum_probs=59.4
Q ss_pred hHHHHHHHHHHHcCCCCC---hhhHHHHHHHHhh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CcHH
Q 041804 194 WKAVKLYKEMKKKGIKMD---VVAYNTVIRAVGV-----SEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCEN-GRVR 264 (403)
Q Consensus 194 ~~a~~~~~~~~~~~~~~~---~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~ 264 (403)
..|...+++..+. .|+ -..|..+...|.+ .|+.++|.+.|++..+.+..-+..++......+++. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3556666666655 344 3467777777776 378888888888887764433466666677777774 7788
Q ss_pred HHHHHHHhchhcCCC--CChhhHH
Q 041804 265 EAYAVLAEMPKKGCV--PDVITYH 286 (403)
Q Consensus 265 ~a~~~~~~~~~~~~~--p~~~~~~ 286 (403)
.+.+.+++....... |+....+
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHH
Confidence 888888877766554 5544444
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.86 E-value=0.027 Score=39.25 Aligned_cols=140 Identities=14% Similarity=0.000 Sum_probs=101.6
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHH
Q 041804 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLF 302 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~ 302 (403)
...|.+++..++..+.... .+..-||.+|--....-+-+-..++++.+-.- -| +..|++.......+
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD-------is~C~NlKrVi~C~ 84 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD-------LDKCQNLKSVVECG 84 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-------GGGCSCTHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-------cHhhhcHHHHHHHH
Confidence 3467888888888877764 36666777776666666666666666655431 12 22345555555444
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 041804 303 DRMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLS 381 (403)
Q Consensus 303 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 381 (403)
-.+ ..+...++..+......|+-++-.+++..+... -+|++...-.+..||.+.|+..+|.+++.+.-++|++
T Consensus 85 ~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 85 VIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 332 236677888899999999999999999996543 3789999999999999999999999999999999974
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.83 E-value=0.0058 Score=53.54 Aligned_cols=97 Identities=5% Similarity=-0.174 Sum_probs=73.7
Q ss_pred HHHHHhcCChHHHHHHHHHHhhcC-----CC---cHHHHHHHHHHHHhcCCHHHHHHHHhccccccc-ccccccCcchHH
Q 041804 74 FKRYVTAHLVNEAMGTFNKLDEFG-----LK---DEVSYCNLVDALCEYKHVIEAQELCFGENKNVG-FSGLVEMNKTKI 144 (403)
Q Consensus 74 ~~~~~~~~~~~~a~~~~~~~~~~~-----~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~ 144 (403)
+..+.+.|++++|+.++++..+.. .. ...+++.+..+|...|++++|+.++++...... .-+...+....+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999887542 22 456788999999999999999999887654321 111133445567
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
++.|...|...|++++|+.++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 99999999999999999999988754
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.091 Score=39.02 Aligned_cols=99 Identities=8% Similarity=0.077 Sum_probs=52.3
Q ss_pred HHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhc
Q 041804 76 RYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKM 155 (403)
Q Consensus 76 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 155 (403)
.....|+++.|.++.+.+ .+...|..|.......|+++-|+..|.+... +..+.-.|.-.
T Consensus 14 LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------------~~~L~~Ly~~t 73 (177)
T 3mkq_B 14 LALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS---------------FDKLSFLYLVT 73 (177)
T ss_dssp HHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------------HHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------------HHHHHHHHHHh
Confidence 334556666666665543 3455666666666666666666666655443 34445555555
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHH
Q 041804 156 SWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLY 200 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 200 (403)
|+.+...++-+.....| -++....++...|+++++.++|
T Consensus 74 g~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL 112 (177)
T 3mkq_B 74 GDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIF 112 (177)
T ss_dssp TCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHH
Confidence 55555444444333322 2334444445555555555555
No 225
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.67 E-value=0.022 Score=41.18 Aligned_cols=85 Identities=14% Similarity=0.013 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcC---CcchHHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 041804 297 EILGLFDRMIESGIRPKMDTYVMLLRKFGRWG---FLRPVFVVWKKMEELGCSP--DEFAYNALVDALIDKGMLDMARKY 371 (403)
Q Consensus 297 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 371 (403)
.+.+-|.+..+.+. ++..+.-.+..++++.+ ++++++.++++..+.. .| +...+-.+.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 44555555555554 57777777788888877 5668888888887764 24 345555666778889999999999
Q ss_pred HHHHHHcCCCCChh
Q 041804 372 DEEMFAKGLSAKPR 385 (403)
Q Consensus 372 ~~~m~~~~~~p~~~ 385 (403)
++.+++ ++|+..
T Consensus 94 ~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 94 VRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHH--HCTTCH
T ss_pred HHHHHh--cCCCCH
Confidence 988887 456543
No 226
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.66 E-value=0.065 Score=51.36 Aligned_cols=157 Identities=10% Similarity=0.060 Sum_probs=109.9
Q ss_pred HHHHhcCChHHHHH-HHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHH
Q 041804 75 KRYVTAHLVNEAMG-TFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWF 153 (403)
Q Consensus 75 ~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 153 (403)
......+++++|.+ ++..+ ++......++..+.+.|..+.|.++.+. +. .-.....
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i-----~~~~~~~~~~~~l~~~~~~~~a~~~~~~-------------~~-----~~f~~~l 663 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNV-----EGKDSLTKIARFLEGQEYYEEALNISPD-------------QD-----QKFELAL 663 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGC-----CCHHHHHHHHHHHHHTTCHHHHHHHCCC-------------HH-----HHHHHHH
T ss_pred hHHHHhCCHHHHHHHHHhcC-----CchHHHHHHHHHHHhCCChHHheecCCC-------------cc-----hheehhh
Confidence 33446788888877 54221 1133347778888889999999876422 11 1134456
Q ss_pred hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHH
Q 041804 154 KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMR 233 (403)
Q Consensus 154 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 233 (403)
..|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|..+.. |..+...+...++.+...+
T Consensus 664 ~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~ 728 (814)
T 3mkq_A 664 KVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVT 728 (814)
T ss_dssp HHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHH
T ss_pred hcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHH
Confidence 789999999886544 2678999999999999999999999988753 3455566666788887777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 234 VYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
+-+.....|- ++....+|.+.|++++|.+++.++.+
T Consensus 729 ~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 729 LAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp HHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred HHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 7777666542 13444557778888888888887764
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.65 E-value=0.2 Score=40.61 Aligned_cols=113 Identities=9% Similarity=-0.116 Sum_probs=81.5
Q ss_pred cchHHHHHHHHH-HHh--cCC------hhHHHHHHHHHHhCCCCC-cHHHHHHHHHHHHHc-----CChhHHHHHHHHHH
Q 041804 140 NKTKIYNMILRG-WFK--MSW------WGKCREFWEEMDKRGVVK-DLHSYSIYMDIMCKS-----GKPWKAVKLYKEMK 204 (403)
Q Consensus 140 ~~~~~~~~l~~~-~~~--~~~------~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~ 204 (403)
+....|..++.+ +.. .|+ ...|...+++..+.+..- +...|..+...|.+. |+.++|.+.|++.+
T Consensus 152 ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL 231 (301)
T 3u64_A 152 VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLT 231 (301)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHH
Confidence 444556555543 333 233 466777888887764331 356899999999984 99999999999999
Q ss_pred HcCCCCChhhHHHHHHHHhhc-CCHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 041804 205 KKGIKMDVVAYNTVIRAVGVS-EGVDFAMRVYREMREMGCQ--PSVVTCNT 252 (403)
Q Consensus 205 ~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~~~~~~~~ 252 (403)
+.+..-+..++......++.. ++.+.+.+.+++....... |+....+.
T Consensus 232 ~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 232 RYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHH
Confidence 974322477788888888885 9999999999999998666 66544443
No 228
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.51 E-value=0.028 Score=40.65 Aligned_cols=81 Identities=9% Similarity=0.024 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhcCCCcHHHHHHHHHHHHhcC---CHHHHHHHHhcccccccccccccC-cchHHHHHHHHHHHhcCChhH
Q 041804 85 EAMGTFNKLDEFGLKDEVSYCNLVDALCEYK---HVIEAQELCFGENKNVGFSGLVEM-NKTKIYNMILRGWFKMSWWGK 160 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~ 160 (403)
.+.+-|.+..+.+.++..+...+..++++++ +.+++..++++.... ..+ .+...+-.+.-+|.+.|++++
T Consensus 16 ~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~------~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 16 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK------GSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CCccchHHHHHHHHHHHHHccCHHH
Confidence 3444444444444445555555555555555 344555555555442 101 123344445555566666666
Q ss_pred HHHHHHHHHhC
Q 041804 161 CREFWEEMDKR 171 (403)
Q Consensus 161 a~~~~~~~~~~ 171 (403)
|.+.++.+.+.
T Consensus 90 A~~y~~~lL~i 100 (152)
T 1pc2_A 90 ALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666554
No 229
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.46 E-value=0.054 Score=38.70 Aligned_cols=103 Identities=15% Similarity=0.175 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHcCCh------hHHHHHHHHHHHcCCCCChh-hHHHHHH------HHhhcCCHHHHHHHHHHHHHcC
Q 041804 176 DLHSYSIYMDIMCKSGKP------WKAVKLYKEMKKKGIKMDVV-AYNTVIR------AVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~ll~------~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|...+. .+...++++.|.++|+.+.+.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455666666666666666 6677777777665 455431 1111111 1123478889999999887764
Q ss_pred CCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCC
Q 041804 243 CQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 243 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 280 (403)
-.. ...|-.....-.+.|++.+|.+++......+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 343 6677777777788999999999998888765544
No 230
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.45 E-value=0.023 Score=38.35 Aligned_cols=74 Identities=4% Similarity=-0.041 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 101 EVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 101 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
...+..+...+.+.+++..|...++..............+...++..+..++.+.|+++.|...+++..+..+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 34455666666677777777776666554321110012345677888888888899999999888888876444
No 231
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.36 E-value=0.15 Score=35.72 Aligned_cols=146 Identities=12% Similarity=0.042 Sum_probs=73.7
Q ss_pred HHHHHHH--HHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-CcHHHHHHHHHH
Q 041804 34 YNSVIDI--LGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-KDEVSYCNLVDA 110 (403)
Q Consensus 34 ~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~l~~~ 110 (403)
...|+.+ +.-.|.+++..++..+.... .+..-+|.+|--....-+-+-..++++.+-+.-- .--.-...++.+
T Consensus 8 ~kkLmeAK~~ildG~v~qGveii~k~~~s----sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C 83 (172)
T 1wy6_A 8 IRKLMDAKKFLLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVEC 83 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHcCC----CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHH
Confidence 3344443 44567888888888777763 3555566666655555555555555544432110 011112233333
Q ss_pred HHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHc
Q 041804 111 LCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKS 190 (403)
Q Consensus 111 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 190 (403)
|.+.+.. ....+..+......|.-+.-.+++..+.. +.+|++.....+..+|.+.
T Consensus 84 ~~~~n~~------------------------se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Kl 138 (172)
T 1wy6_A 84 GVINNTL------------------------NEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRV 138 (172)
T ss_dssp HHHTTCC------------------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHT
T ss_pred HHHhcch------------------------HHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHh
Confidence 3332211 12234444555555555555555555433 2234555555566666666
Q ss_pred CChhHHHHHHHHHHHcCC
Q 041804 191 GKPWKAVKLYKEMKKKGI 208 (403)
Q Consensus 191 ~~~~~a~~~~~~~~~~~~ 208 (403)
|+..++.+++.+.-+.|+
T Consensus 139 g~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 139 GDERDATTLLIEACKKGE 156 (172)
T ss_dssp TCHHHHHHHHHHHHHTTC
T ss_pred cchhhHHHHHHHHHHhhh
Confidence 666666666666666554
No 232
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.10 E-value=0.66 Score=40.78 Aligned_cols=266 Identities=11% Similarity=0.106 Sum_probs=156.7
Q ss_pred cccHHHHHHhhhhhcc----cCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHH--HHHHHHHHHhcC
Q 041804 8 ANDWKRALEFFNWVET----DCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHAT--FRIMFKRYVTAH 81 (403)
Q Consensus 8 ~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~ 81 (403)
+++++.|++.+..+.+ ..+..-+......++..|...|+++...+.+..+....+..+...+ .+.++.......
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence 4789999988766654 2333445778889999999999999998888776654422222222 223333333344
Q ss_pred ChHH--HHHHHHHHhh--cC---CC--cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 82 LVNE--AMGTFNKLDE--FG---LK--DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 82 ~~~~--a~~~~~~~~~--~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
..+. -+.+.+.+.. .| +. .......|...+...|++.+|..++..+..... ......--...+..-++.|
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~-~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETY-GSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-SSSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHH
Confidence 3332 2222222211 11 11 233456788889999999999999988764310 0001122345678888999
Q ss_pred HhcCChhHHHHHHHHHHh----CCCCCc--HHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHHHHH----H
Q 041804 153 FKMSWWGKCREFWEEMDK----RGVVKD--LHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-GIKMDVVAYNTVIR----A 221 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~----~ 221 (403)
...+++..|..++.++.. ....|+ ...+..++..+...+++.+|...|.+.... ....|...+..++. +
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~ 267 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYF 267 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHH
Confidence 999999999999988642 222232 245666777788899999998888777543 11123322222211 1
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CcHHHHHHHHHhch
Q 041804 222 VGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCEN--GRVREAYAVLAEMP 274 (403)
Q Consensus 222 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g~~~~a~~~~~~~~ 274 (403)
..-.+..+.-..++........-++...|..++.+|... .+++.+...|....
T Consensus 268 ~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 268 LVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred HHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 111222122223333333332334677888888888764 45777777776544
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.81 E-value=0.23 Score=35.53 Aligned_cols=114 Identities=11% Similarity=0.027 Sum_probs=79.4
Q ss_pred CcchHHHHHHHHHHHhcCCh------hHHHHHHHHHHhCCCCCcH-HHHHHHHH------HHHHcCChhHHHHHHHHHHH
Q 041804 139 MNKTKIYNMILRGWFKMSWW------GKCREFWEEMDKRGVVKDL-HSYSIYMD------IMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 139 ~~~~~~~~~l~~~~~~~~~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 205 (403)
+.|..+|-..+...-+.|+. +...++|++.... ++|+. ..|...+. .+...+++++|.++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56777788888888878888 8888899888764 33332 11111111 12334899999999999987
Q ss_pred cCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 041804 206 KGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIK 255 (403)
Q Consensus 206 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 255 (403)
..-.. ...|....+.-.+.|+++.|.+++......+..|. ......++
T Consensus 89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~ 136 (161)
T 4h7y_A 89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR 136 (161)
T ss_dssp HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence 64343 66777777777899999999999999999876643 33444443
No 234
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=95.45 E-value=0.0012 Score=57.18 Aligned_cols=316 Identities=7% Similarity=-0.048 Sum_probs=168.9
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
|+..|..+|.+..+.|.+++-++++....+.. .++..=+.|+-+|++.++..+-++++. .++..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl~------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFIN------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTTS------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHHc------CCCcccHHHHHH
Confidence 45567777888888888888777777666543 333444577778888777665443321 124444556666
Q ss_pred HHHhcCCHHHHHHHHhccccccc--------------ccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 041804 110 ALCEYKHVIEAQELCFGENKNVG--------------FSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVK 175 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 175 (403)
-|...|.++.|.-+|..+..-.. +.......++.+|..+-.+|...+++.-|.-.--.+.-. |
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a 229 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A 229 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H
Confidence 67777777777666655443221 111123456677888888888888877776554444322 1
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc-CCC------CCHH
Q 041804 176 DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM-GCQ------PSVV 248 (403)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~ 248 (403)
| -...++..|-..|.+++-+.+++..... -+.....|+-|.-.|++- ++++..+.++..-.+ +++ -...
T Consensus 230 d--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ah 305 (624)
T 3lvg_A 230 D--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH 305 (624)
T ss_dssp S--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTT
T ss_pred H--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHh
Confidence 1 2334667778888888888888876643 234566777777777654 444444444432221 111 1234
Q ss_pred HHHHHHHHHHhcCcHHHHHHHHHhchhc-CCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 041804 249 TCNTVIKLLCENGRVREAYAVLAEMPKK-GCVPDVITYHCFFRCLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRW 327 (403)
Q Consensus 249 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 327 (403)
.|.-++..|.+-.+++.|.... .++ ...-+...|--++....+.+--.+...-.++ -.+...+-|+.++...
T Consensus 306 LW~ElvfLY~~ydE~DnA~ltM---i~h~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~----e~P~lL~DLL~vL~pr 378 (624)
T 3lvg_A 306 LWAELVFLYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLE----FKPLLLNDLLMVLSPR 378 (624)
T ss_dssp CHHHHHHHHHHHTCHHHHHHTT---TSCHHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTT----SCCTTSHHHHHHHCTT
T ss_pred hHHHHHHHHhcchhHHHHHHHH---HhCChhhccHHHHHHHHHHcchHHHHHHHHHHHHH----hChHHHHHHHHhcccc
Confidence 5666777777777777654321 111 0000111111111111222111111111111 1222345555555555
Q ss_pred CCcchHHHHHHHHHh----------cCCCCCHHHHHHHHHHHHhcCCHHHH
Q 041804 328 GFLRPVFVVWKKMEE----------LGCSPDEFAYNALVDALIDKGMLDMA 368 (403)
Q Consensus 328 g~~~~a~~~~~~~~~----------~~~~~~~~~~~~l~~~~~~~g~~~~a 368 (403)
=|..++.++|++.-. ..-..+..+-.++-+.|....+++.-
T Consensus 379 lDh~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEEDy~~L 429 (624)
T 3lvg_A 379 LDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQAL 429 (624)
T ss_dssp CCSTTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTCCHHH
T ss_pred CChHHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhhHHHH
Confidence 555555555554321 01123455556777788888876643
No 235
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.43 E-value=0.29 Score=33.99 Aligned_cols=83 Identities=7% Similarity=-0.015 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHH---HHHHHhcccccccccccccC-cchHHHHHHHHHHHhcCCh
Q 041804 83 VNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIE---AQELCFGENKNVGFSGLVEM-NKTKIYNMILRGWFKMSWW 158 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~ 158 (403)
...+.+-|......|.++..+-..+..++.+..+... +..++..+... ..+ ......-.|.-++.+.|++
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~------~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK------GSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT------SCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHHHhhhH
Confidence 3344455554444454555555555555555554444 55555555443 111 2333444555566666666
Q ss_pred hHHHHHHHHHHhC
Q 041804 159 GKCREFWEEMDKR 171 (403)
Q Consensus 159 ~~a~~~~~~~~~~ 171 (403)
++|.+.++.+.+.
T Consensus 91 ~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 91 EKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666666554
No 236
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=95.23 E-value=2.3 Score=40.88 Aligned_cols=229 Identities=7% Similarity=-0.155 Sum_probs=109.2
Q ss_pred HHHHccCChhHHHHHHHHhhhCC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC-----C-cH----HHHHHH
Q 041804 39 DILGKFFEFDLSWNLIHRMKDNP-SSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGL-----K-DE----VSYCNL 107 (403)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~----~~~~~l 107 (403)
-.....|+.++++.+++.....+ ...+....-..+.-+.+..|..+++..++.......- . +. .+...|
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556777777777777665421 0112233333444455556665566666666544321 0 01 111122
Q ss_pred HHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 108 VDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 108 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
..++.-.++ +++...+..+.... .......+--.+...+.-.|+.+....++..+.+.... +..-...+.-++
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd-----~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e-~vrR~aalgLGl 534 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND-----SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHG-NITRGLAVGLAL 534 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC-----CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCH-HHHHHHHHHHHH
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC-----CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcH-HHHHHHHHHHHh
Confidence 222223333 23333333333221 10001112223334455667766667777666553211 222222233334
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCChhh--HHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHH
Q 041804 188 CKSGKPWKAVKLYKEMKKKGIKMDVVA--YNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVRE 265 (403)
Q Consensus 188 ~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 265 (403)
...|+.+.+..+++.+.... .|...- ..++.-+|+..|+.....+++..+.+.. ..++.....+.-++...|+.+.
T Consensus 535 l~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 535 INYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp HTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSS
T ss_pred hhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHH
Confidence 46677777777777776541 222211 1233446677777777777777776541 2223333333334444666666
Q ss_pred HHHHHHhchhc
Q 041804 266 AYAVLAEMPKK 276 (403)
Q Consensus 266 a~~~~~~~~~~ 276 (403)
+.+++..+.+.
T Consensus 613 v~rlv~~L~~~ 623 (963)
T 4ady_A 613 VPRIVQLLSKS 623 (963)
T ss_dssp HHHHTTTGGGC
T ss_pred HHHHHHHHHhc
Confidence 66666665553
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.83 E-value=0.3 Score=42.08 Aligned_cols=78 Identities=10% Similarity=-0.064 Sum_probs=62.6
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCChhhHHHH
Q 041804 316 TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA-----KGLSAKPREELGT 390 (403)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~~~ 390 (403)
+...++..+...|++++|...+..+.... +-+...|..++.++.+.|+..+|.+.|++... .|+.|.+.+.--.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 34556778888999999999988887764 56888999999999999999999999988765 3999998876555
Q ss_pred HHHh
Q 041804 391 KLVQ 394 (403)
Q Consensus 391 ~~~~ 394 (403)
..+.
T Consensus 252 ~~il 255 (388)
T 2ff4_A 252 ERIL 255 (388)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.73 E-value=0.47 Score=32.93 Aligned_cols=84 Identities=13% Similarity=0.003 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcch---HHHHHHHHHhcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 041804 298 ILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRP---VFVVWKKMEELGCSP--DEFAYNALVDALIDKGMLDMARKYD 372 (403)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~ 372 (403)
+.+-|......|. |+..+--.+.+++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|.+++
T Consensus 20 ~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~ 97 (126)
T 1nzn_A 20 FEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKYV 97 (126)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444444443 566666667777777776555 777888777653 23 2333345566788888888888888
Q ss_pred HHHHHcCCCCChh
Q 041804 373 EEMFAKGLSAKPR 385 (403)
Q Consensus 373 ~~m~~~~~~p~~~ 385 (403)
+.+++ +.|+..
T Consensus 98 ~~lL~--~eP~n~ 108 (126)
T 1nzn_A 98 RGLLQ--TEPQNN 108 (126)
T ss_dssp HHHHH--HCTTCH
T ss_pred HHHHH--hCCCCH
Confidence 88887 445543
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.29 E-value=0.53 Score=44.09 Aligned_cols=129 Identities=9% Similarity=0.059 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC-hhHHHHHHHHHHHc------CCCCChh---
Q 041804 145 YNMILRGWFKMSW-WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK-PWKAVKLYKEMKKK------GIKMDVV--- 213 (403)
Q Consensus 145 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~------~~~~~~~--- 213 (403)
...++..+...++ ++.|..+|+++....+..+......++..+...++ --+|.+++.+..+. ..++...
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3455566666666 58899999999887543233223333433333332 22455555554321 1222111
Q ss_pred --------hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 214 --------AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 214 --------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
....=...+...|+++.|+.+-++....- +.+-.+|..|..+|...|+++.|+-.++.++
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222344567899999999999998863 3357899999999999999999999999875
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.97 E-value=0.32 Score=41.94 Aligned_cols=200 Identities=9% Similarity=-0.048 Sum_probs=103.2
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC-------CC-c
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVT-AHLVNEAMGTFNKLDEFG-------LK-D 100 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~-------~~-~ 100 (403)
+...+..|.....+.|+.-...++.+.+-..........+....+.-+-+ .+.....-..+......| .. |
T Consensus 32 ~~k~~~LL~~L~~~~g~~vsr~~L~~~lW~~~~~~~a~~~L~~~i~rLRk~L~~~~~~~~~i~~~~~~GY~l~~~~~~~D 111 (388)
T 2ff4_A 32 TPKQRAVLAMLVINRNRPVGVDALITALWEEWPPSGARASIHSYVSNLRKLLGGAGIDPRVVLAAAPPGYRLSIPDNTCD 111 (388)
T ss_dssp SHHHHHHHHHHHHTTTSEEEHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHGGGTSCHHHHEEECSSEEEECCCGGGBH
T ss_pred ChHHHHHHHHHHhCCCCcccHHHHHHHhCCCCCChhHHHHHHHHHHHHHHhhcccCCCCceEEEEECCEEEEcCCCccch
Confidence 45556555555666677766777777776654111223344443332221 111100000111111111 11 5
Q ss_pred HHHHHHHHHHHH---hcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChh-HHHHHHHHHHhCCCCCc
Q 041804 101 EVSYCNLVDALC---EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWG-KCREFWEEMDKRGVVKD 176 (403)
Q Consensus 101 ~~~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~ 176 (403)
...|..++.... ..|+.+.+...+.++.....- ..-++.. ...|- ....-+++..
T Consensus 112 ~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG---~~L~~~~-----------~~~w~~~~r~~l~~~~------- 170 (388)
T 2ff4_A 112 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRG---PVLDDLR-----------DFQFVEPFATALVEDK------- 170 (388)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS---STTGGGT-----------TSTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC---CCCCCCC-----------chhHHHHHHHHHHHHH-------
Confidence 555666554432 357888777777665543210 1111110 01111 1112222221
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 041804 177 LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMRE-----MGCQPSVVTCN 251 (403)
Q Consensus 177 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 251 (403)
..+...++..+...|+++++...+..+.... +.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 1244556677777888888887777776653 55777888888888888888888888877653 47777776543
No 241
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.44 E-value=0.77 Score=43.04 Aligned_cols=133 Identities=8% Similarity=-0.055 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCC-hHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcC-CHHHHHHHHhcccccc-----cccccc----
Q 041804 70 FRIMFKRYVTAHL-VNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYK-HVIEAQELCFGENKNV-----GFSGLV---- 137 (403)
Q Consensus 70 ~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~-----~~~~~~---- 137 (403)
...++..+...++ .+.|..+|+++.+.++. +......++..+...+ +--+|.+++.+..+.. ......
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3445555555666 57899999999987766 3333333343333332 2234555554433210 000000
Q ss_pred --cCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 041804 138 --EMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEM 203 (403)
Q Consensus 138 --~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 203 (403)
.+........-...+...|+++.|+++-++.....+. +-.+|..|..+|...|+++.|+-.++.+
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 0011122333356677889999999999999887555 6789999999999999999999988876
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.17 E-value=4.1 Score=35.73 Aligned_cols=196 Identities=8% Similarity=0.025 Sum_probs=119.9
Q ss_pred CChhHHHHHHHHhhhC----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHH----hcCC
Q 041804 45 FEFDLSWNLIHRMKDN----PSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALC----EYKH 116 (403)
Q Consensus 45 ~~~~~a~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 116 (403)
|+++.|++.+-.+.+. +...........++..|...++++...+.+..+.+...........+++.+. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877665532 2133456778889999999999999988887776554443333344444332 3333
Q ss_pred HH--HHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCc---HHHHHHHHHHHHH
Q 041804 117 VI--EAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR--GVVKD---LHSYSIYMDIMCK 189 (403)
Q Consensus 117 ~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 189 (403)
.+ .-..+.........-.-............|...|...|++.+|.+++..+... +.... ...+...++.|..
T Consensus 110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~ 189 (445)
T 4b4t_P 110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL 189 (445)
T ss_dssp THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 22 22333333222110000000113445677888999999999999999987542 22111 3466777888889
Q ss_pred cCChhHHHHHHHHHHHc----CCCCCh--hhHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 041804 190 SGKPWKAVKLYKEMKKK----GIKMDV--VAYNTVIRAVGVSEGVDFAMRVYREMRE 240 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~----~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 240 (403)
.+++..|..++...... ...|+. ..+...+..+...+++..|.+.|.++.+
T Consensus 190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99999999888886432 112221 2445556666778888888877777654
No 243
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.10 E-value=0.69 Score=30.35 Aligned_cols=44 Identities=11% Similarity=0.084 Sum_probs=21.0
Q ss_pred HHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHH
Q 041804 196 AVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMR 239 (403)
Q Consensus 196 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 239 (403)
+.+-++.+...++.|+..+..+.+++|.+.+++..|.++|+-++
T Consensus 29 ~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 29 LRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33334444444444555555555555555555555555554444
No 244
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.82 E-value=3 Score=41.72 Aligned_cols=139 Identities=9% Similarity=-0.054 Sum_probs=93.6
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCC---------------------CCC
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPS---------------------SIP 65 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---------------------~~~ 65 (403)
..+.++.|.++..|... ++...-.+..++..+|++++|...|.+....-. ...
T Consensus 824 ~~~~~~~~~~l~~~~~~------~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 897 (1139)
T 4fhn_B 824 LFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNL 897 (1139)
T ss_dssp HHSCTTHHHHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCS
T ss_pred HhhhHHHHHHHhhhccC------CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccccc
Confidence 34666677777666652 344445667889999999999999987532100 001
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-cH----HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCc
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK-DE----VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMN 140 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 140 (403)
-..-|..++..+.+.+.++.+.++-....+...+ +. ..|..+.+.+...|++++|...+..+... ..
T Consensus 898 l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~--------~~ 969 (1139)
T 4fhn_B 898 LSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT--------PL 969 (1139)
T ss_dssp SHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS--------SS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH--------HH
Confidence 1235778888999999999999888877665443 22 36888999999999999998887655432 22
Q ss_pred chHHHHHHHHHHHhcCChh
Q 041804 141 KTKIYNMILRGWFKMSWWG 159 (403)
Q Consensus 141 ~~~~~~~l~~~~~~~~~~~ 159 (403)
.......++...+..|..+
T Consensus 970 r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 970 KKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp CHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHHHHHHhCCChh
Confidence 3345566666666555543
No 245
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=92.75 E-value=1.7 Score=30.30 Aligned_cols=77 Identities=12% Similarity=0.054 Sum_probs=51.1
Q ss_pred CCCCchhhHHHHHHHHHhcCC---cchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 041804 309 GIRPKMDTYVMLLRKFGRWGF---LRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPR 385 (403)
Q Consensus 309 ~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 385 (403)
+..|+..+--.+.+++.+..+ ..+++.+++.+.+.+..-....+-.|.-++.+.|++++|.++.+.+.+ +.|+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 445566665566667766654 456788888887654111344555666788889999999998888877 556554
Q ss_pred hH
Q 041804 386 EE 387 (403)
Q Consensus 386 ~~ 387 (403)
-.
T Consensus 113 QA 114 (134)
T 3o48_A 113 QV 114 (134)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.62 E-value=9.2 Score=38.31 Aligned_cols=150 Identities=11% Similarity=-0.002 Sum_probs=84.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhccccccccccccc-------------
Q 041804 72 IMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVE------------- 138 (403)
Q Consensus 72 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------- 138 (403)
.++..+...+..+.+.++..... .++...-.+..++...|++++|...|.+............
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 35555666777776666543332 2555556677888999999999999988755331111000
Q ss_pred ---CcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCc----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 041804 139 ---MNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKD----LHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD 211 (403)
Q Consensus 139 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (403)
..-..-|..++..+-+.+.++.+.++-....+....-+ ...|..+.+.+...|++++|...+-.+..... -
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r 970 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K 970 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence 00112355666666666777666666555444321111 12466666777777777777766666554422 2
Q ss_pred hhhHHHHHHHHhhcCC
Q 041804 212 VVAYNTVIRAVGVSEG 227 (403)
Q Consensus 212 ~~~~~~ll~~~~~~~~ 227 (403)
......|+...+..+.
T Consensus 971 ~~cLr~LV~~lce~~~ 986 (1139)
T 4fhn_B 971 KSCLLDFVNQLTKQGK 986 (1139)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhCCC
Confidence 3344555555554444
No 247
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.10 E-value=9 Score=36.99 Aligned_cols=312 Identities=10% Similarity=-0.096 Sum_probs=165.6
Q ss_pred HHHHHHHHHccCChhHH-HHH-HHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCcHH--HHHHHH
Q 041804 34 YNSVIDILGKFFEFDLS-WNL-IHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFG-LKDEV--SYCNLV 108 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a-~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~--~~~~l~ 108 (403)
-..+.+++..+|--.+. ... .+.+.+. .+....-....-+....|+.++++.++......+ ..+.. .=..+.
T Consensus 342 A~~f~Naf~naG~~~D~~l~~~~~Wl~k~---~~~~k~sA~aSLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAlla 418 (963)
T 4ady_A 342 AVSVANGFMHAGTTDNSFIKANLPWLGKA---QNWAKFTATASLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYG 418 (963)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHCHHHHHHC---CTHHHHHHHHHHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCcchhhhcchhhhhcc---chHHHHHHHHHhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHH
Confidence 34667788888854333 221 2233332 2333333444556778899999999988876532 12222 223333
Q ss_pred HHHHhcCCHHHHHHHHhccccccc-ccccccCcchHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCcH--HHHHHHH
Q 041804 109 DALCEYKHVIEAQELCFGENKNVG-FSGLVEMNKTKIYNMILRGWFKMSW-WGKCREFWEEMDKRGVVKDL--HSYSIYM 184 (403)
Q Consensus 109 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~--~~~~~l~ 184 (403)
-+....|...++..++........ ..+....+....-..+.-+.+-.|. -+++.+.+..+....-. .. .+-..|.
T Consensus 419 LGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~~-~~~~~AalALG 497 (963)
T 4ady_A 419 LGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDSA-TSGEAAALGMG 497 (963)
T ss_dssp HHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCCH-HHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCH-HHHHHHHHHHh
Confidence 344455555567776666554321 0000112333334444444444443 24556666665543211 11 1222334
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH--hhcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhc
Q 041804 185 DIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV--GVSEGVDFAMRVYREMREMGCQPSVVTC--NTVIKLLCEN 260 (403)
Q Consensus 185 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~li~~~~~~ 260 (403)
..+.-.|+.+....++..+.+.. +..+...+..++ .-.|+.+.+..+++.+... ..|....- .++.-+|+..
T Consensus 498 li~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGT 573 (963)
T 4ady_A 498 LCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGT 573 (963)
T ss_dssp HHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTS
T ss_pred hhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCC
Confidence 44556678777788887776642 333444444444 4678989999998888764 12222222 2344567788
Q ss_pred CcHHHHHHHHHhchhcCCCCChhhHHHHHH-----hhCCHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCc-chHH
Q 041804 261 GRVREAYAVLAEMPKKGCVPDVITYHCFFR-----CLEKPREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFL-RPVF 334 (403)
Q Consensus 261 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~ 334 (403)
|+.....+++..+.+. ++...-...+. .++..+.+..++..+.+.+ .|....-..+.-+....|.. .++.
T Consensus 574 Gn~~aIq~LL~~~~~d---~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 574 GNNSAVKRLLHVAVSD---SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp CCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCHHHHHHHHHHhccC---CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 9988887899888764 22222222222 2245555566665554443 45555444555555555654 5788
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 041804 335 VVWKKMEELGCSPDEFAYNALVDALI 360 (403)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (403)
+++..+.. .+|..+-...+.++.
T Consensus 650 d~L~~L~~---D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 650 DVLDPLTK---DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred HHHHHHcc---CCCHHHHHHHHHHHH
Confidence 88888864 355555444444443
No 248
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=91.94 E-value=1.5 Score=28.63 Aligned_cols=86 Identities=8% Similarity=0.065 Sum_probs=62.2
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHH-hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTD-TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
..+++|.-+-+|+.. .++.+ +--.-+..+...|++++|..+.+.+. .||...|..|-. .+.|..+++.
T Consensus 21 H~HqEA~tIAdwL~~----~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHL----KGEEEAVQLIRLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHH--HHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHH
Confidence 468899999999985 23322 22233456778999999999887765 488888876654 6788888898
Q ss_pred HHHHHHhhcCCCcHHHHH
Q 041804 88 GTFNKLDEFGLKDEVSYC 105 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ 105 (403)
..+.++...|.+....|.
T Consensus 90 ~rL~~la~sg~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQDPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 888888887766444443
No 249
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=90.79 E-value=0.00051 Score=59.30 Aligned_cols=216 Identities=6% Similarity=0.004 Sum_probs=147.7
Q ss_pred CHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHH
Q 041804 30 TTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVD 109 (403)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 109 (403)
.+.+|..|..+..+.+.+.+|++-|-+. .|+..|..++.+..+.|.+++-++.+...++ ...++.+=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA-------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk-~~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCCC-------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST-TCCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHhC-------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH-HhcccccHHHHHH
Confidence 4668899999999999999987765322 3555688899999999999999988865554 3457777788999
Q ss_pred HHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-----------------
Q 041804 110 ALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRG----------------- 172 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----------------- 172 (403)
+|++.++..+.++. -..||..-...+..-|...|.++.|.-+|..+....
T Consensus 125 ayAk~~rL~elEef-------------l~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVd 191 (624)
T 3lvg_A 125 ALAKTNRLAELEEF-------------INGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVD 191 (624)
T ss_dssp HHHTSCSSSTTTST-------------TSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTT
T ss_pred HHHhhCcHHHHHHH-------------HcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHH
Confidence 99999987665443 223555555677788888888888877665542211
Q ss_pred ---CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 041804 173 ---VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT 249 (403)
Q Consensus 173 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 249 (403)
-.-++.||..+-.+|...+.+.-|.-.--.+.-. || -...++..|-..|.+++.+.+++..... -......
T Consensus 192 aArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGm 265 (624)
T 3lvg_A 192 GARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGM 265 (624)
T ss_dssp TTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHH
T ss_pred HHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHH
Confidence 1125668888888888888877665444333322 22 2234566777888888888888776632 2346777
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhc
Q 041804 250 CNTVIKLLCENGRVREAYAVLAEM 273 (403)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~~ 273 (403)
|+-|.-.|++- ++++..+.++..
T Consensus 266 FTELaILYsKY-~PeKlmEHlklf 288 (624)
T 3lvg_A 266 FTELAILYSKF-KPQKMREHLELF 288 (624)
T ss_dssp HHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred HHHHHHHHHhc-CHHHHHHHHHHH
Confidence 88888777764 455555555543
No 250
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=90.67 E-value=1.4 Score=28.73 Aligned_cols=86 Identities=12% Similarity=0.066 Sum_probs=62.3
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHH-hHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTD-TYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAM 87 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 87 (403)
..+++|.-+-+|+.. .++.+ +--.-+..+...|++++|..+.+.+. .||...|..|-. .+.|..+++.
T Consensus 20 H~HqEA~tIAdwL~~----~~~~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 20 HCHEEALCIAEWLER----LGQDEAARLIRISSLANQGRYQEALAFAHGNP-----WPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHH--HHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHh----CCcHHHHHHHHHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHH--HhcccHHHHH
Confidence 478899999999985 23322 22233456778999999988877664 488888876654 6889999999
Q ss_pred HHHHHHhhcCCCcHHHHH
Q 041804 88 GTFNKLDEFGLKDEVSYC 105 (403)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~ 105 (403)
..+.++...|.+....|.
T Consensus 89 ~rL~~la~sg~p~~q~Fa 106 (115)
T 2uwj_G 89 RRLAGLGGSSDPALADFA 106 (115)
T ss_dssp HHHHHHHTCSSHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHH
Confidence 988888887766444443
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.58 E-value=4.2 Score=28.83 Aligned_cols=74 Identities=11% Similarity=0.027 Sum_probs=48.3
Q ss_pred CCCchhhHHHHHHHHHhcCC---cchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChh
Q 041804 310 IRPKMDTYVMLLRKFGRWGF---LRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPR 385 (403)
Q Consensus 310 ~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 385 (403)
..|+..+--.+.+++.+..+ ..+++.+++.+.+.+-.-.....-.|.-++.+.|++++|.++.+.+++ +.|+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 34566665566667776664 456777888777653112233344555678888888888888888887 556554
No 252
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.47 E-value=3.2 Score=27.31 Aligned_cols=64 Identities=14% Similarity=0.016 Sum_probs=51.6
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 041804 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRA 221 (403)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 221 (403)
+.=+..+-++.+...+..|++....+.+++|-+.+++..|.++|+-.+.. ..+...+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHH
Confidence 44567788888888999999999999999999999999999999988876 23344567666643
No 253
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=89.41 E-value=2.5 Score=34.04 Aligned_cols=246 Identities=15% Similarity=0.090 Sum_probs=111.8
Q ss_pred HHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH---HHHHHH
Q 041804 107 LVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL---HSYSIY 183 (403)
Q Consensus 107 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l 183 (403)
.+...++.|+.+....+++.-..- ....+.. -.+.+...+..|+.+ +++.+.+.|..++. ...+.
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~~g~~~------~~~~~~~-g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~- 75 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLEGGANV------NFQEEEG-GWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATP- 75 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT------TCCCTTT-CCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCH-
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc------ccccCCC-CCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCH-
Confidence 344455667777766666542221 1010110 112344445566654 44444455544332 22222
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH-----------
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDV---VAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT----------- 249 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----------- 249 (403)
+...+..|+.+ +++.+.+.|..++. ..++.+. ..+..|+.+- ++.+.+.|..++...
T Consensus 76 L~~A~~~~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~ 146 (285)
T 1wdy_A 76 FLLAAIAGSVK----LLKLFLSKGADVNECDFYGFTAFM-EAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRK 146 (285)
T ss_dssp HHHHHHHTCHH----HHHHHHHTTCCTTCBCTTCCBHHH-HHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred HHHHHHcCCHH----HHHHHHHcCCCCCccCcccCCHHH-HHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhcc
Confidence 33344556654 44444555554432 2223333 3345666544 444445554443210
Q ss_pred -HHHHHHHHHhcCcHHHHHHHHHhchhcCCCC---ChhhHHHHHHhh--CCHHHHHHHHHHHHHcCCCCchhh--HHHHH
Q 041804 250 -CNTVIKLLCENGRVREAYAVLAEMPKKGCVP---DVITYHCFFRCL--EKPREILGLFDRMIESGIRPKMDT--YVMLL 321 (403)
Q Consensus 250 -~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~--~~~li 321 (403)
-...+...+..|+.+-+..+++.. |..+ +....+.+..+. +......++.+.+.+.|..++... -.+.+
T Consensus 147 ~g~t~L~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L 223 (285)
T 1wdy_A 147 GGATALMDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPL 223 (285)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHH
Confidence 012333445667776666665542 2222 222223333332 344444667777777777665421 12334
Q ss_pred HHHHhcCCcchHHHHHHHHHhcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 322 RKFGRWGFLRPVFVVWKKMEELGCSPD---EFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 322 ~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
...++.|+.+-+..+++. .|..++ ..-.+. +...++.|+. ++.+-+.+.|..|+.
T Consensus 224 ~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~-l~~A~~~~~~----~i~~~Ll~~Ga~~~~ 281 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTA-LLLAVELKLK----KIAELLCKRGASTDC 281 (285)
T ss_dssp HHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCH-HHHHHHTTCH----HHHHHHHHHSSCSCC
T ss_pred HHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcH-HHHHHHcCcH----HHHHHHHHcCCCCCc
Confidence 445566766544444331 333332 222223 3334455655 345555667776654
No 254
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=87.99 E-value=1.8 Score=34.51 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred hcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 041804 79 TAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFG 126 (403)
Q Consensus 79 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 126 (403)
+.|+++.|++....-.+..+.|...-..+++.+|-.|+++.|.+-++.
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~ 56 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQ 56 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344444444444444444444444444444444445555544444433
No 255
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=87.91 E-value=5.3 Score=29.17 Aligned_cols=99 Identities=8% Similarity=-0.069 Sum_probs=67.7
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHHHhhcC-------
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH-------ATFRIMFKRYVTAHLVNEAMGTFNKLDEFG------- 97 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------- 97 (403)
.++-.-+..+...|.++.|+-+.+.+.......|+. .++..+.+++...|++.+|...|++.....
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~ 100 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTS 100 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345556777888899988888777654322112331 255667788889999999999998853211
Q ss_pred -----------------CC-cHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 98 -----------------LK-DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 98 -----------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
.. +.+.---+..+|.+.+++++|+.+++.+...
T Consensus 101 s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 101 KVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred CccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 01 2234455788899999999999999887654
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=87.68 E-value=5.5 Score=27.83 Aligned_cols=76 Identities=11% Similarity=-0.084 Sum_probs=51.8
Q ss_pred CCcCCHHhHHHHHHHHHccCC---hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHH
Q 041804 26 HFTHTTDTYNSVIDILGKFFE---FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV 102 (403)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 102 (403)
+..|++.+--.+..++.+..+ ..+++.+++.+...+ ..-....+-.+.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~-~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 445666666666667776654 446778888777754 1113455666777888888888888888888887766443
No 257
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.22 E-value=14 Score=32.12 Aligned_cols=98 Identities=3% Similarity=-0.152 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC--CCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCChhhHHH---
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRG--VVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK-GIKMDVVAYNT--- 217 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~--- 217 (403)
+...+...|.+.|+++.|.+.+.++...- ...-...+-.++..+...+++..+...+.+.... .-.++....+.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 45678889999999999999999987642 2334567778888888999999999888887554 11122222111
Q ss_pred -HHHHHhhcCCHHHHHHHHHHHHHc
Q 041804 218 -VIRAVGVSEGVDFAMRVYREMREM 241 (403)
Q Consensus 218 -ll~~~~~~~~~~~a~~~~~~~~~~ 241 (403)
-...+...+++..|.+.|-+....
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 112234568888888888776654
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=86.69 E-value=6.4 Score=27.53 Aligned_cols=45 Identities=13% Similarity=0.077 Sum_probs=21.0
Q ss_pred HHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 041804 162 REFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
.+-++.+...+..|++......+++|-+.+++..|.++|+-.+.+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K 117 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 117 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 333444444444444444444444444444444444444444433
No 259
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=85.80 E-value=7.2 Score=27.29 Aligned_cols=64 Identities=5% Similarity=-0.000 Sum_probs=48.8
Q ss_pred ChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHH
Q 041804 46 EFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDA 110 (403)
Q Consensus 46 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 110 (403)
+.-+..+-++.+...+ ..|++......+++|-+.+++..|.++|+-++..-.....+|..+++-
T Consensus 68 D~wElrrglN~l~~~D-lVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYD-LVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSS-BCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccc-cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHH
Confidence 4446667777777776 679999999999999999999999999998877554445556666553
No 260
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.17 E-value=10 Score=33.10 Aligned_cols=98 Identities=11% Similarity=-0.027 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcC--CCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHc---CCCCCHHH--H
Q 041804 178 HSYSIYMDIMCKSGKPWKAVKLYKEMKKKG--IKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREM---GCQPSVVT--C 250 (403)
Q Consensus 178 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~--~ 250 (403)
.+...+...|.+.|+++.|.+.|.++...- ..--...+-.+++.+...+++..+...+.++... +..|+... .
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 367789999999999999999999998763 2333457778889999999999999999988654 22222211 1
Q ss_pred HHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 251 NTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 251 ~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
..-...+...+++..|...|-+...
T Consensus 212 ~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 212 TYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHhc
Confidence 1112233457889999888877654
No 261
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.87 E-value=13 Score=29.63 Aligned_cols=71 Identities=7% Similarity=-0.103 Sum_probs=55.3
Q ss_pred HHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC---cHHHHHHHHHH
Q 041804 38 IDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLK---DEVSYCNLVDA 110 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 110 (403)
+..+.+.|++++++.....-.+.. +-|...-..++..++-.|++++|.+-++...+..+. ....|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~--P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 345678899999999887777765 467788888999999999999999999998888766 33355555555
No 262
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=83.17 E-value=11 Score=27.47 Aligned_cols=120 Identities=10% Similarity=-0.007 Sum_probs=64.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCcH-------HHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCh-h
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRG-VVKDL-------HSYSIYMDIMCKSGKPWKAVKLYKEMKKKG-IKMDV-V 213 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-~ 213 (403)
++..-+..+...+.++.|+-+.+.+.... ..|+. .++..+.+++...+++..|...|++.++.. .-+.. .
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34555677777888888877766654321 12221 245566677788888888888888865431 11111 1
Q ss_pred hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchhc
Q 041804 214 AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPKK 276 (403)
Q Consensus 214 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 276 (403)
+...+ . ....... ......+...---+..+|.+.+++++|+.+++.+..+
T Consensus 102 ~~~~~-~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 102 VRPST-G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp ----------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred ccccc-c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 11111 0 0000000 0011223334344778899999999999999987654
No 263
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=80.96 E-value=11 Score=27.10 Aligned_cols=53 Identities=13% Similarity=0.103 Sum_probs=28.8
Q ss_pred hHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 332 PVFVVWKKMEELGCSP-DEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 332 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
.+.++|..|...|+-. -...|......+...|++++|.++|+.-++++-.|-.
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 3555555555554332 2344555555555566666666666666665555543
No 264
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=80.21 E-value=8.5 Score=30.78 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=10.7
Q ss_pred HHHHHHccCChhHHHHHHH
Q 041804 37 VIDILGKFFEFDLSWNLIH 55 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~ 55 (403)
.+...++.|+++....+++
T Consensus 8 ~L~~A~~~g~~~~v~~Ll~ 26 (285)
T 1wdy_A 8 LLIKAVQNEDVDLVQQLLE 26 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3445566677665555554
No 265
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=79.29 E-value=14 Score=26.13 Aligned_cols=74 Identities=11% Similarity=-0.063 Sum_probs=52.4
Q ss_pred cCCHHhHHHHHHHHHccCC---hhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHH
Q 041804 28 THTTDTYNSVIDILGKFFE---FDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEV 102 (403)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 102 (403)
.|+..+--.+..++.+..+ ..+++.+++.+...+ ..-.....-.|.-++.+.|++++|.+..+.+.+..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~-~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHC-CSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-ccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 5777776667777777764 456778888887754 1123445556777888889999999999888888876443
No 266
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=78.62 E-value=31 Score=29.57 Aligned_cols=296 Identities=11% Similarity=0.007 Sum_probs=161.0
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCC---HHHHHHHHHHHHhc-CChHHHHHHHHH----HhhcCCC--cH
Q 041804 32 DTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPN---HATFRIMFKRYVTA-HLVNEAMGTFNK----LDEFGLK--DE 101 (403)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-~~~~~a~~~~~~----~~~~~~~--~~ 101 (403)
.+...|...|.+.|+.++..+++.....--...|- ......++..+... +..+.-.++..+ ....... ..
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678889999999999999998877553211222 33466778877764 333333344333 3332111 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCcHHH
Q 041804 102 VSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKR--GVVKDLHS 179 (403)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~ 179 (403)
..=..++..|...|++.+|.+++.++.......+ ....-..++..-+..|...+++.++...+...... .+.+++..
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2233688999999999999988887776431100 11223445777778899999999999999876542 22233332
Q ss_pred HHHH----HHHHH-HcCChhHHHHHHHHHHHc-C-C-CC---ChhhHHHHHHHHhhcCCHHHHHHHHH-HHHHcCCCCCH
Q 041804 180 YSIY----MDIMC-KSGKPWKAVKLYKEMKKK-G-I-KM---DVVAYNTVIRAVGVSEGVDFAMRVYR-EMREMGCQPSV 247 (403)
Q Consensus 180 ~~~l----~~~~~-~~~~~~~a~~~~~~~~~~-~-~-~~---~~~~~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~ 247 (403)
...+ ...+. ..+++..|...|-+..+. . . .| +...|..+.... .++..+...++. .....-..|..
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl--~~~r~el~~~l~~~~~~~~~~pei 256 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIM--LGQSDDVNQLVSGKLAITYSGRDI 256 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH--TTCGGGHHHHHHSHHHHTTCSHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHH--cCCHHHHHHHhccccccccCCccH
Confidence 2222 12345 688999998887665432 1 1 11 112332222222 233222222221 11111124556
Q ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCCHHHHHHHHHHHHHcC----CCC-chhhHHHHHH
Q 041804 248 VTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEKPREILGLFDRMIESG----IRP-KMDTYVMLLR 322 (403)
Q Consensus 248 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~ 322 (403)
..+..++.+| +.+++.....++..... .+..|......+ ..+++.+.... +.| ...++..+..
T Consensus 257 ~~l~~L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~----------~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~ 324 (394)
T 3txn_A 257 DAMKSVAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL----------GTLYDTMLEQNLCRIIEPYSRVQVAHVAE 324 (394)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH----------HHHHHHHHHHHHHHHHTTCSEEEHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH----------HHHHHHHHHHHHHHHhHhhceeeHHHHHH
Confidence 6666677765 56778777777776543 233454322111 11222222111 112 3345556655
Q ss_pred HHHhcCCcchHHHHHHHHHhcC
Q 041804 323 KFGRWGFLRPVFVVWKKMEELG 344 (403)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~~ 344 (403)
.+.- ..++++..+-+|...|
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg 344 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDK 344 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTT
T ss_pred HHCc--CHHHHHHHHHHHHHCC
Confidence 5543 5778888888887654
No 267
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=78.52 E-value=28 Score=28.98 Aligned_cols=111 Identities=15% Similarity=0.228 Sum_probs=62.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHH----HHHHHHHcCCCCChhhHHHHHH
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVK----LYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
|.++..-|.+.+++++|.+++..-. ..+.+.|+...+-+ +++.+.+.++++|.....-++.
T Consensus 38 ~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 38 TRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4566667788888888888765432 12233344433333 3344555566677666666666
Q ss_pred HHhhcCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhcCcHHHHHHHH
Q 041804 221 AVGVSEGVD-FAMRVYREMR----EMG--CQPSVVTCNTVIKLLCENGRVREAYAVL 270 (403)
Q Consensus 221 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~ 270 (403)
.+.....-+ .=..+++.+. +.| ..-++.....+...|.+.+++.+|...|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 665444311 1122333333 223 2335666777778888888888877766
No 268
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=77.87 E-value=28 Score=28.73 Aligned_cols=77 Identities=12% Similarity=0.089 Sum_probs=37.1
Q ss_pred HHHHHHHHHcCCCCchhhH--HHHHHHHHhcCCcchHHHHHHHHHhcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHH
Q 041804 299 LGLFDRMIESGIRPKMDTY--VMLLRKFGRWGFLRPVFVVWKKMEELGCSPDE---FAYNALVDALIDKGMLDMARKYDE 373 (403)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~ 373 (403)
.++.+.+.+.|..++.... .+.+...++.|+.+ +++.+.+.|..++. .-.+.|. ..++.|+.+ +++
T Consensus 227 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~ga~~n~~d~~g~t~L~-~A~~~~~~~----~v~ 297 (351)
T 3utm_A 227 KQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND----VMEVLHKHGAKMNALDSLGQTALH-RAALAGHLQ----TCR 297 (351)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHH-HHHHHTCHH----HHH
T ss_pred HHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCCcCCCCCCHHH-HHHHcCcHH----HHH
Confidence 4556666666665543211 12344445666664 44444555544432 1223333 334556654 444
Q ss_pred HHHHcCCCCCh
Q 041804 374 EMFAKGLSAKP 384 (403)
Q Consensus 374 ~m~~~~~~p~~ 384 (403)
.+.+.|..|+.
T Consensus 298 ~Ll~~gad~~~ 308 (351)
T 3utm_A 298 LLLSYGSDPSI 308 (351)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHcCCCCCC
Confidence 55556665543
No 269
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.34 E-value=21 Score=27.03 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC
Q 041804 295 PREILGLFDRMIESGIRPK-MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP 347 (403)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 347 (403)
..+..++|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5588888888887766533 3567777777788888888888888888777777
No 270
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=75.76 E-value=19 Score=27.89 Aligned_cols=26 Identities=8% Similarity=-0.097 Sum_probs=14.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
+...+..|+.+.+..+++.+.+.+..
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~ 38 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRE 38 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 34445566666666666655555433
No 271
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=75.41 E-value=21 Score=26.04 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCC
Q 041804 297 EILGLFDRMIESGIRPK-MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPD 348 (403)
Q Consensus 297 ~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 348 (403)
+..++|..|...|+-.. ...|......+-..|++.+|.++|+.-.+.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 34555566655554322 23444555555555666666666665555555553
No 272
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.64 E-value=35 Score=28.12 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=69.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHH----HHHHHHHcCCCCChhhHHHHHH
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVK----LYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
|.++..-|.+.+++++|.+++..-.. .+.+.|+...|-+ +++.+.+.+++++.....-++.
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 56677778888888888887654321 2334455444433 3555566677888777777777
Q ss_pred HHhhcCCHH-HHHHHHHHHH----HcC--CCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Q 041804 221 AVGVSEGVD-FAMRVYREMR----EMG--CQPSVVTCNTVIKLLCENGRVREAYAVLA 271 (403)
Q Consensus 221 ~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 271 (403)
.+......+ .-.++++.+. +.| ..-++.....+...|.+.|++.+|...|-
T Consensus 101 l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 101 LIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 765533211 1233333333 332 22367778888889999888888887775
No 273
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.14 E-value=23 Score=31.47 Aligned_cols=66 Identities=12% Similarity=-0.025 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH--HH-HHHHHHHHHhcCChHHHHHHHHHHhhc
Q 041804 31 TDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH--AT-FRIMFKRYVTAHLVNEAMGTFNKLDEF 96 (403)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 96 (403)
...+|.+++.|...+.++.|..+..+..--....++. .. +-.+...+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3345566666666666666666666553210000111 11 112334445555666666665555443
No 274
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=72.04 E-value=18 Score=27.97 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCC
Q 041804 296 REILGLFDRMIESGIRPK-MDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSP 347 (403)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 347 (403)
++..++|..|...|+-.. ...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 445556666665554322 2345555555666666666666666666555555
No 275
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=70.78 E-value=23 Score=27.30 Aligned_cols=183 Identities=14% Similarity=0.117 Sum_probs=93.5
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChh---hHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHH
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVV---AYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVT--CNTVIKLLC 258 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~ 258 (403)
+...+..|+.+.+..+++.+.+.|..++.. -.+. +...+..|+.+- ++.+.+.|..++... -...+...+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~~~----v~~Ll~~g~~~~~~~~~g~t~l~~A~ 87 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTP-LHLAVITTLPSV----VRLLVTAGASPMALDRHGQTAAHLAC 87 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCH-HHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCH-HHHHHHcCCHHH----HHHHHHcCCCccccCCCCCCHHHHHH
Confidence 445567789888888888777766554432 2233 344456777654 444555665544321 112334445
Q ss_pred hcCcHHHHHHHHHhchhcCCCC---ChhhHHHHHHhh--CCHHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcCCc
Q 041804 259 ENGRVREAYAVLAEMPKKGCVP---DVITYHCFFRCL--EKPREILGLFDRMIESGIRPKMDT---YVMLLRKFGRWGFL 330 (403)
Q Consensus 259 ~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~--~~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~ 330 (403)
..|+.+-+..+++.....++.+ +....+.+..+. ++ .++++.+.+.|..++... -.+.+...+..|+.
T Consensus 88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~----~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~ 163 (241)
T 1k1a_A 88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTEC----QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSL 163 (241)
T ss_dssp HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTC----HHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCC----HHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCH
Confidence 6788877777776654222222 222222232222 22 345566666666554322 22344445566775
Q ss_pred chHHHHHHHHHhcCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCh
Q 041804 331 RPVFVVWKKMEELGCSPDEF---AYNALVDALIDKGMLDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 331 ~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 384 (403)
+-+ +.+.+.|..++.. -.+. +...++.|+.+ +++.+.+.|..|+.
T Consensus 164 ~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~ga~~~~ 211 (241)
T 1k1a_A 164 SMV----QLLLQHGANVNAQMYSGSSA-LHSASGRGLLP----LVRTLVRSGADSSL 211 (241)
T ss_dssp HHH----HHHHHTTCCTTCBCTTSCBH-HHHHHHHTCHH----HHHHHHHTTCCTTC
T ss_pred HHH----HHHHHcCCCCCCcCCCCCCH-HHHHHHcCCHH----HHHHHHhcCCCCCC
Confidence 544 4444555544322 1223 33345567654 45555566766553
No 276
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=68.86 E-value=72 Score=29.35 Aligned_cols=115 Identities=11% Similarity=-0.027 Sum_probs=60.8
Q ss_pred ChhHHHHHHHHHHhCCCCCcHHHHHHHHHHH----HHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHH
Q 041804 157 WWGKCREFWEEMDKRGVVKDLHSYSIYMDIM----CKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAM 232 (403)
Q Consensus 157 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 232 (403)
+.+.|...|....+...- +......+-... ...+...++...+...... .++.......+....+.++++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 567777777766543321 222222222222 2233244555555554433 233333444445455677888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 233 RVYREMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
..|+.|..... ....-.--+.+++...|+.++|..+|..+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 87777654311 1233333455666777888888777777653
No 277
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=68.64 E-value=26 Score=30.54 Aligned_cols=113 Identities=8% Similarity=0.001 Sum_probs=78.2
Q ss_pred ccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 041804 9 NDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMG 88 (403)
Q Consensus 9 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 88 (403)
++++.|+++-. +.|++--...|..-...+...|++++|-++-...+.. .-.+..|.+.+-..=...|+..-.+.
T Consensus 343 ~n~~lA~~lA~----R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~g--iLRt~~Ti~rFk~vp~~pgq~splL~ 416 (494)
T 1bpo_A 343 QNPDLALRMAV----RNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG--ILRTPDTIRRFQSVPAQPGQTSPLLQ 416 (494)
T ss_dssp CCHHHHHHHHH----HTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG--SSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred CCHHHHHHHHH----hcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCccc--cccCHHHHHHHhcCCCCCCCCCHHHH
Confidence 55666666554 3556666677888888899999999999888877653 24566666555554455567777788
Q ss_pred HHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcc
Q 041804 89 TFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGE 127 (403)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 127 (403)
.|..+.+.|.-+..--.-+++.-..+|+.+-.++++.+-
T Consensus 417 YF~~Ll~~g~Ln~~ESlEl~r~vL~q~r~~llekWl~e~ 455 (494)
T 1bpo_A 417 YFGILLDQGQLNKYESLELCRPVLQQGRKQLLEKWLKED 455 (494)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHhccCccchHHhhHHhHHHHhccHHHHHHHHHhcC
Confidence 888888777656555556666667777777777766543
No 278
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=68.63 E-value=38 Score=26.51 Aligned_cols=88 Identities=9% Similarity=0.060 Sum_probs=45.0
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc--CCCC----ChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKK--GIKM----DVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLL 257 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 257 (403)
++.+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+.+ .. .++.......+..+
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l-~~--~~~~~~~r~~v~~L 101 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSI-LS--SNEIVHLKSGTENM 101 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHH-HT--CSSHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHH-Hh--cCCHHHHHHHHHHH
Confidence 44555666677776666655443 2221 1112222233333333333444444444 22 34555566666777
Q ss_pred HhcCcHHHHHHHHHhch
Q 041804 258 CENGRVREAYAVLAEMP 274 (403)
Q Consensus 258 ~~~g~~~~a~~~~~~~~ 274 (403)
.+.|+.++|.++|=+..
T Consensus 102 ~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 102 IKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHCCChhHHHHHHHHHH
Confidence 77888888877775543
No 279
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=67.62 E-value=32 Score=24.76 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK--PWKAVKLYKEMKKKGIKM 210 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 210 (403)
.+.++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...++-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~-~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcch-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 567788888888999998888888532111 22233334444444322 345666777776665443
No 280
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=65.55 E-value=21 Score=27.25 Aligned_cols=22 Identities=9% Similarity=-0.070 Sum_probs=12.1
Q ss_pred HHHHhcCChHHHHHHHHHHhhc
Q 041804 75 KRYVTAHLVNEAMGTFNKLDEF 96 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~~ 96 (403)
..|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3455555566666555555543
No 281
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=65.43 E-value=24 Score=27.22 Aligned_cols=57 Identities=7% Similarity=0.049 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHhcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCChhh
Q 041804 330 LRPVFVVWKKMEELGCSP-DEFAYNALVDALIDKGMLDMARKYDEEMFAKGLSAKPRE 386 (403)
Q Consensus 330 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 386 (403)
.+.+.++|..|...|+-. -...|......+...|++.+|..+|+.-++++-.|-...
T Consensus 130 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL 187 (223)
T 4aez_C 130 IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187 (223)
T ss_dssp CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHH
T ss_pred cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHH
Confidence 468889999998887654 466788999999999999999999999999998885543
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.46 E-value=12 Score=29.66 Aligned_cols=55 Identities=5% Similarity=-0.169 Sum_probs=30.3
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHH-------HHHHHHHHHH--HcCChhHHHHHHHHH
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLH-------SYSIYMDIMC--KSGKPWKAVKLYKEM 203 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~--~~~~~~~a~~~~~~~ 203 (403)
+...++.|+.+....+++.+.+.+..++.. -.+.|..+.. +.|+.+-+..+++.-
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 444556677777777777666665544422 2233433332 456666665555544
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.42 E-value=11 Score=29.20 Aligned_cols=204 Identities=14% Similarity=0.121 Sum_probs=87.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCcHH--HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChh----hHHHHHHHHh
Q 041804 150 RGWFKMSWWGKCREFWEEMDKRGVVKDLH--SYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVV----AYNTVIRAVG 223 (403)
Q Consensus 150 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~ 223 (403)
...++.|+.+.+..++ +.|..++.. .-...+...+..|+.+-+ +.+.+.|..++.. ..+ .+...+
T Consensus 14 ~~A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~~~~~~~~~~~~~~t-~L~~A~ 84 (240)
T 3eu9_A 14 VKATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWAAINNRIDLV----KYYISKGAIVDQLGGDLNST-PLHWAT 84 (240)
T ss_dssp HHHHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHHHHTTCHHHH----HHHHHTTCCTTCCBTTTTBC-HHHHHH
T ss_pred HHHHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHHHHhCCHHHH----HHHHHcCCcchhhcCCcCCC-hhHHHH
Confidence 3345667765554444 444433221 112244555667776544 4444454333211 222 334445
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCCh---hhHHHHHHhh--CCH
Q 041804 224 VSEGVDFAMRVYREMREMGCQPSVV---TCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDV---ITYHCFFRCL--EKP 295 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~---~~~~~l~~~~--~~~ 295 (403)
..|+.+-+ +.+.+.|..++.. ..+ .+...+..|+.+-+..+++ .|..++. ...+.+..+. +..
T Consensus 85 ~~~~~~~v----~~Ll~~g~~~~~~~~~g~t-~l~~A~~~~~~~~~~~Ll~----~~~~~~~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 85 RQGHLSMV----VQLMKYGADPSLIDGEGCS-CIHLAAQFGHTSIVAYLIA----KGQDVDMMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp HHTCHHHH----HHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred HcCCHHHH----HHHHHcCCCCcccCCCCCC-HHHHHHHcCHHHHHHHHHh----cCCCccccCCCCCcHHHHHHHhCCh
Confidence 56776544 4444555554422 222 2334456677665444444 3333321 1112222222 222
Q ss_pred HHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHH
Q 041804 296 REILGLFDRMIESGIRPKMDT---YVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAY--NALVDALIDKGMLDMARK 370 (403)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~ 370 (403)
.+ +.+.+.+.|..++... -.+.+...+..|+.+-+.. +.+.|..++.... ...+....+.|+.+-+..
T Consensus 156 ~~---~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~ 228 (240)
T 3eu9_A 156 VD---PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL----LLEAGANVDAQNIKGESALDLAKQRKNVWMINH 228 (240)
T ss_dssp ST---THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHH----HHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred HH---HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHH
Confidence 22 2333444454443221 1133444556666654443 3344444432211 123445566777766555
Q ss_pred HHHHHHHc
Q 041804 371 YDEEMFAK 378 (403)
Q Consensus 371 ~~~~m~~~ 378 (403)
+++.....
T Consensus 229 L~~~~~~~ 236 (240)
T 3eu9_A 229 LQEARQAK 236 (240)
T ss_dssp HHHHC---
T ss_pred HHHhhhcc
Confidence 55544333
No 284
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=64.41 E-value=88 Score=28.77 Aligned_cols=112 Identities=11% Similarity=-0.028 Sum_probs=64.1
Q ss_pred cHHHHHHHHHhchhcCCCCChhhHH----HHHHhhC--C-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcCCcchHH
Q 041804 262 RVREAYAVLAEMPKKGCVPDVITYH----CFFRCLE--K-PREILGLFDRMIESGIRPKMDTYVMLLRKFGRWGFLRPVF 334 (403)
Q Consensus 262 ~~~~a~~~~~~~~~~~~~p~~~~~~----~l~~~~~--~-~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 334 (403)
+.+.|...+....+... .+..... .+..... . ..++...+....... ++.....-.+....+.|+++.|.
T Consensus 229 d~~~A~~~~~~~~~~~~-~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp CHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CHHHHHHHHHhhhhccC-CCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHH
Confidence 67888888877754321 1222222 2222221 2 345566666544432 23333344444555778999999
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 335 VVWKKMEELGCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
..|+.|..... ......--+..++...|+.++|..+|+.+..
T Consensus 306 ~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 98888765321 1233333445677788999999988888764
No 285
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.86 E-value=69 Score=26.99 Aligned_cols=68 Identities=19% Similarity=0.195 Sum_probs=43.1
Q ss_pred hHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCh
Q 041804 316 TYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM--LDMARKYDEEMFAKGLSAKP 384 (403)
Q Consensus 316 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~ 384 (403)
....++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+...+++..+...|+-+..
T Consensus 219 ki~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~ 288 (358)
T 3eiq_C 219 EIDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 288 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHH
Confidence 3567788888889999999998887632111 23344455555555433 34577778777777765433
No 286
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=61.94 E-value=37 Score=23.55 Aligned_cols=65 Identities=12% Similarity=0.147 Sum_probs=38.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCC
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK--PWKAVKLYKEMKKKGIKM 210 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~ 210 (403)
...++.-|...|+.++|.+.++++...... .......+..++-+.++ .+.+..++..+...|+-+
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~-~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is 76 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 76 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccH-HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 466788888888888888888887532111 22233334444444332 345667777776665443
No 287
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=60.37 E-value=21 Score=27.43 Aligned_cols=16 Identities=6% Similarity=0.144 Sum_probs=8.9
Q ss_pred HHHccCChhHHHHHHH
Q 041804 40 ILGKFFEFDLSWNLIH 55 (403)
Q Consensus 40 ~~~~~~~~~~a~~~~~ 55 (403)
..++.|+++....+++
T Consensus 15 ~A~~~g~~~~~~~Ll~ 30 (240)
T 3eu9_A 15 KATQYGIYERCRELVE 30 (240)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHH
Confidence 3455666665555554
No 288
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.23 E-value=54 Score=24.88 Aligned_cols=48 Identities=21% Similarity=0.180 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 83 VNEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
...+..+|..|...++. -...|......+...|++.+|..+|+.-...
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 44555666655555544 4455555555555566666666666555444
No 289
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.50 E-value=87 Score=30.67 Aligned_cols=82 Identities=9% Similarity=-0.032 Sum_probs=45.3
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCC---------------------
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP--------------------- 65 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--------------------- 65 (403)
..+.++-|.++..|+.. ++..--.+..+|...|++++|...|++...-- ..+
T Consensus 822 ~~~~~~~a~eL~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl-~~~~~~~~~~~~~~~ll~~~e~~~ 894 (950)
T 4gq2_M 822 LFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVL-YSHTSQFAVLREFQEIAEKYHHQN 894 (950)
T ss_dssp HTTCHHHHHHHGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTT-CSSCCSCGGGHHHHHHHHHTTTCS
T ss_pred HhcHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhc-ccCcccccchhhhhhccCcccccc
Confidence 34556666666666552 22222356677777788888877777554210 000
Q ss_pred -CHHHHHHHHHHHHhcCChHHHHHHHHHHhh
Q 041804 66 -NHATFRIMFKRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 66 -~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 95 (403)
...-|..++..+-+.+.++.+.++-+....
T Consensus 895 ~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 895 LLSCYYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 011455566666666666666666555554
No 290
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=58.80 E-value=3.7 Score=27.94 Aligned_cols=74 Identities=9% Similarity=0.119 Sum_probs=43.5
Q ss_pred cccccccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcC
Q 041804 2 ETLSCYANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAH 81 (403)
Q Consensus 2 ~~l~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 81 (403)
+.++.++++|++++.+... . ..|.-.|...+..++.+-|.++++-..+.| +...|.+++-.|...=
T Consensus 13 ~~~ykkN~rw~qSI~L~Kk----D------kLykDAietAa~S~d~elaEeLL~yFVe~g----~kEcF~A~LytCYdLl 78 (125)
T 3qil_A 13 GLVPRGSHMWKQSVELAKK----D------SLYKDAMQYASESKDTELAEELLQWFLQEE----KRECFGACLFTCYDLL 78 (125)
T ss_dssp CCCSSSCCCCSSCCCCCSC----C------CCSSHHHHTTTSSCCSHHHHHHHHHHTTSC----SHHHHHHHHHHHTTCS
T ss_pred cchhhccccHHHHHHHHHh----c------ccHHHHHHHHHHcCCHHHHHHHHHHHHHcC----chHHHHHHHHHHHhcc
Confidence 3456666677766665432 1 123445566666777777777777776654 5555666666666655
Q ss_pred ChHHHHHH
Q 041804 82 LVNEAMGT 89 (403)
Q Consensus 82 ~~~~a~~~ 89 (403)
+++-++++
T Consensus 79 rpDvVLEl 86 (125)
T 3qil_A 79 RPDVVLEL 86 (125)
T ss_dssp CTTHHHHT
T ss_pred ChHHHHHH
Confidence 55555543
No 291
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=58.00 E-value=22 Score=26.49 Aligned_cols=14 Identities=21% Similarity=0.119 Sum_probs=6.6
Q ss_pred HHHHHHHHhcCCCC
Q 041804 334 FVVWKKMEELGCSP 347 (403)
Q Consensus 334 ~~~~~~~~~~~~~~ 347 (403)
.++.+.+.+.|..+
T Consensus 158 ~~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 158 QDIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHHTTCCT
T ss_pred HHHHHHHHHCCCCC
Confidence 44444455554444
No 292
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=57.55 E-value=91 Score=26.69 Aligned_cols=169 Identities=9% Similarity=0.018 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC-hhHHHHHHHHHHhCCCCCcHHHH-
Q 041804 103 SYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW-WGKCREFWEEMDKRGVVKDLHSY- 180 (403)
Q Consensus 103 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~- 180 (403)
....|...|.+.|+.++...++.....-.. .............++..+....+ .+.-.++..+..+..-. ...+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~fl 97 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLS--SISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGG--GSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345556666666666666666555443220 00111223334555555555322 22223333222221000 11122
Q ss_pred -----HHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----hhhHHHHHHHHhhcCCHHHHHHHHHHHHHc--CCCCCHH
Q 041804 181 -----SIYMDIMCKSGKPWKAVKLYKEMKKKGIKMD-----VVAYNTVIRAVGVSEGVDFAMRVYREMREM--GCQPSVV 248 (403)
Q Consensus 181 -----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~ 248 (403)
.-++..|...|++.+|.+++..+.+.=-..| ..++..-++.|...+++..+...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 2567788888888888888888776411112 224555566777888888888888777643 2223333
Q ss_pred HHHH----HHHHHH-hcCcHHHHHHHHHhch
Q 041804 249 TCNT----VIKLLC-ENGRVREAYAVLAEMP 274 (403)
Q Consensus 249 ~~~~----li~~~~-~~g~~~~a~~~~~~~~ 274 (403)
.... -...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2221 223345 6788888887776653
No 293
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=57.51 E-value=13 Score=31.33 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=50.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH---HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDL---HSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
...+...+..|+.+.+..++ +.|..++. .-++. +...+..|+.+-+ +.+.+.|..++...-.+.+...
T Consensus 21 ~t~L~~Aa~~g~~~~v~~Ll----~~g~~~~~~d~~g~t~-L~~A~~~g~~~~v----~~Ll~~g~~~~~~~g~t~L~~A 91 (364)
T 3ljn_A 21 MEKIHVAARKGQTDEVRRLI----ETGVSPTIQNRFGCTA-LHLACKFGCVDTA----KYLASVGEVHSLWHGQKPIHLA 91 (364)
T ss_dssp HHHHHHHHHHTCHHHHHHHH----HTTCCTTCCCTTCCCH-HHHHHHHCCHHHH----HHHHHHCCCCCCBTTBCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHH----HcCCCccccCCCCCcH-HHHHHHcCCHHHH----HHHHHCCCCccccCCCCHHHHH
Confidence 34455555667766555544 44544433 22333 3444566766544 4444455444432222334445
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCH
Q 041804 223 GVSEGVDFAMRVYREMREMGCQPSV 247 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~ 247 (403)
+..|+.+-+..+++.....|..++.
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~ 116 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPES 116 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHcCCHHHHHHHHHhccccCCCHHH
Confidence 5778888888887776666665443
No 294
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=57.35 E-value=1.1e+02 Score=27.41 Aligned_cols=64 Identities=11% Similarity=0.144 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCCcHH--H-HHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 67 HATFRIMFKRYVTAHLVNEAMGTFNKLDEF--GLKDEV--S-YCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~--~-~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
...+|.+++.|...+.++.|..+..+..-- ...+.. . +--+.+.+.-.+++.+|.+.+......
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 457899999999999999999999987521 111211 1 223566777899999999988876654
No 295
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=56.94 E-value=23 Score=26.34 Aligned_cols=14 Identities=0% Similarity=-0.054 Sum_probs=7.3
Q ss_pred HccCChhHHHHHHH
Q 041804 42 GKFFEFDLSWNLIH 55 (403)
Q Consensus 42 ~~~~~~~~a~~~~~ 55 (403)
+..|+.+....++.
T Consensus 13 ~~~g~~~~v~~ll~ 26 (201)
T 3hra_A 13 ANQRDTKKVKEILQ 26 (201)
T ss_dssp HHTTCHHHHHHHHT
T ss_pred HHhccHHHHHHHHH
Confidence 44555555555554
No 296
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=55.83 E-value=84 Score=25.78 Aligned_cols=26 Identities=12% Similarity=0.256 Sum_probs=20.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHh
Q 041804 145 YNMILRGWFKMSWWGKCREFWEEMDK 170 (403)
Q Consensus 145 ~~~l~~~~~~~~~~~~a~~~~~~~~~ 170 (403)
...++.-|...|+.++|...++++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~ 31 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNL 31 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC
Confidence 45677888888899998888887643
No 297
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=54.22 E-value=40 Score=27.12 Aligned_cols=235 Identities=7% Similarity=-0.074 Sum_probs=110.2
Q ss_pred ccccHHHHHHhhhhhcccCCCcCCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHH
Q 041804 7 YANDWKRALEFFNWVETDCHFTHTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEA 86 (403)
Q Consensus 7 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 86 (403)
...+.++..+++..-. -...|..-.+ .+...+..|+.+-+..+++.-.... .++ -.+.+...+..|+.+-+
T Consensus 8 ~~~~~~~v~~lL~~~~---~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~---g~t~L~~A~~~g~~~~v 78 (285)
T 3kea_A 8 NTWKSKQLKSFLSSKD---TFKADVHGHS-ASYYAIADNNVRLVCTLLNAGALKN--LLE---NEFPLHQAATLEDTKIV 78 (285)
T ss_dssp GGCCHHHHHHHHHSTT---TTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTTGGGS--CCT---TCCHHHHHTTSSSCHHH
T ss_pred HhcCHHHHHHHHHhCC---CCccCCCCCC-HHHHHHHcCCHHHHHHHHhCCCCCC--CCC---CCCHHHHHHHcCCHHHH
Confidence 3455666666664321 1122222222 3445566788877766665422211 111 12344555667777665
Q ss_pred HHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHH
Q 041804 87 MGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWE 166 (403)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 166 (403)
..+++.-......+..-++.|.. .+..|+.+-+..+++.-..- ...+..-+.+.+...+..|+.+ +.+
T Consensus 79 ~~Ll~~ga~~~~~d~~g~t~L~~-A~~~g~~~~v~~Ll~~ga~~-------~~~~~~g~~t~L~~A~~~~~~~----~v~ 146 (285)
T 3kea_A 79 KILLFSGLDDSQFDDKGNTALYY-AVDSGNMQTVKLFVKKNWRL-------MFYGKTGWKTSFYHAVMLNDVS----IVS 146 (285)
T ss_dssp HHHHHTTCCTTCCCTTSCCHHHH-HHHTTCHHHHHHHHHHCGGG-------GGCSSSGGGSHHHHHHHTTCHH----HHH
T ss_pred HHHHHCCCCCCCcCCCCCcHHHH-HHHcCCHHHHHHHHhcCCCC-------CccCCCCCCCHHHHHHHcCCHH----HHH
Confidence 55554321111123333333333 34567777776666542211 1111111123344455566654 444
Q ss_pred HHHhCCCCC-cHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 041804 167 EMDKRGVVK-DLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQP 245 (403)
Q Consensus 167 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 245 (403)
.+.+.|..+ +...-.+.+...+..|+.+-+.-+++.-..-.. .|..-.++.+...+..|+.+ +.+.+.+.|..+
T Consensus 147 ~Ll~~g~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~-~~~~g~t~~L~~A~~~~~~~----~v~~Ll~~gad~ 221 (285)
T 3kea_A 147 YFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLLFIPDIKLAIDNKDIE----MLQALFKYDINI 221 (285)
T ss_dssp HHHTTSCTTCCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCT-TCCCBCCTTHHHHHHHTCHH----HHHHHTTSCBCS
T ss_pred HHHhCCCccccccCCccHHHHHHHcChHHHHHHHHHcCCCCCc-ccCCCCChHHHHHHHcCCHH----HHHHHHHcCCCC
Confidence 555555433 221233444555677887766666655333221 12222233233444566644 445556678777
Q ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 246 SVVTCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 246 ~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
+..... -+..|+.+-+.-+++.
T Consensus 222 ~~~~~~-----a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 222 YSANLE-----NVLLDDAEIAKMIIEK 243 (285)
T ss_dssp TTTTGG-----GGTTTCHHHHHHHHHH
T ss_pred CCCChh-----hhhcCCHHHHHHHHHc
Confidence 665421 1345666555555443
No 298
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=53.80 E-value=11 Score=21.87 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Q 041804 159 GKCREFWEEMDKRGVVKDLHSYSIYMDIM 187 (403)
Q Consensus 159 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 187 (403)
++|.+.|.+|++..-.++..+|...|+..
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 45666666665543333555677766666
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=53.35 E-value=29 Score=25.27 Aligned_cols=47 Identities=9% Similarity=0.101 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhc--CCC-cHHHHHHHHHHHHhcCC
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEF--GLK-DEVSYCNLVDALCEYKH 116 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~-~~~~~~~l~~~~~~~~~ 116 (403)
-..++..+...+..-.|.++++.+.+. ++. +..|.-.-+..+...|-
T Consensus 35 R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 35 REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 344555555555666666666666665 444 55555555555555553
No 300
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=53.30 E-value=94 Score=25.57 Aligned_cols=112 Identities=16% Similarity=0.021 Sum_probs=59.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHH----HHHHHHhCCCCCcHHH
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCRE----FWEEMDKRGVVKDLHS 179 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~ 179 (403)
|.++..=|.+.+++++|.+++..- ...+.+.|+...|.+ +.+-..+.+.+++...
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~g---------------------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~ 94 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQG---------------------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDIS 94 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHH---------------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH
Confidence 344445566667777777664332 222334455444443 3444555666667666
Q ss_pred HHHHHHHHHHcCChh-HHHHHHHHHHH----cC--CCCChhhHHHHHHHHhhcCCHHHHHHHHH
Q 041804 180 YSIYMDIMCKSGKPW-KAVKLYKEMKK----KG--IKMDVVAYNTVIRAVGVSEGVDFAMRVYR 236 (403)
Q Consensus 180 ~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 236 (403)
..-++..+..-..-+ .=.++++.+.+ .| ..-+......+...|.+.+++.+|...|-
T Consensus 95 ~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 95 VARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 666666654432211 11233333332 11 12255666677777777788777777653
No 301
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=52.29 E-value=77 Score=24.27 Aligned_cols=48 Identities=10% Similarity=-0.036 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhcCCCcHH--------HHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 83 VNEAMGTFNKLDEFGLKDEV--------SYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 83 ~~~a~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
.+.|+.+|+.+.+....+.. .-...+..|.+.|.+++|.+++++....
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 46899999998876532111 1224566789999999999999988764
No 302
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=51.90 E-value=46 Score=21.62 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=13.3
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcC
Q 041804 299 LGLFDRMIESGIRPKMDTYVMLLRKFGRWG 328 (403)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 328 (403)
.++.+++..-|+.|+..+..-++..|...+
T Consensus 29 e~L~eEfdefGi~~~d~VldKc~ELC~~y~ 58 (101)
T 2keb_A 29 QQLAEELQIFGLDCEEALIEKLVELCVQYG 58 (101)
T ss_dssp HHHHHHHHHHTCBCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 334444444444444444444444444333
No 303
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=50.43 E-value=73 Score=23.49 Aligned_cols=56 Identities=16% Similarity=0.033 Sum_probs=35.3
Q ss_pred HHHhcCCcchHHHHHHHHHhcCCC----------------CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 041804 323 KFGRWGFLRPVFVVWKKMEELGCS----------------PDE-FAYNALVDALIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 323 ~~~~~g~~~~a~~~~~~~~~~~~~----------------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 378 (403)
+|-+..++..|...++.+....+. .|. ..|+.+...|...|+.++|+..+..--..
T Consensus 71 Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 71 CYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 344555666666666555532221 233 34667778889999999999988765443
No 304
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=48.69 E-value=87 Score=24.46 Aligned_cols=29 Identities=21% Similarity=0.282 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 041804 176 DLHSYSIYMDIMCKSGKPWKAVKLYKEMK 204 (403)
Q Consensus 176 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 204 (403)
+.......+..+.+.|+.++|.++|-+..
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44445555566666677777766665543
No 305
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=48.53 E-value=71 Score=22.75 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=19.3
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 041804 220 RAVGVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGR 262 (403)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (403)
..+...+..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 34 ~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 34 SVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 3333333444455555555444444444444444444444443
No 306
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.53 E-value=69 Score=22.62 Aligned_cols=36 Identities=19% Similarity=0.192 Sum_probs=15.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041804 226 EGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENG 261 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (403)
+..-.|.++++.+.+.+...+..|...-+..+...|
T Consensus 35 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 35 MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 333444444444444443334444334444444444
No 307
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=47.86 E-value=82 Score=23.27 Aligned_cols=23 Identities=4% Similarity=0.011 Sum_probs=10.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC
Q 041804 224 VSEGVDFAMRVYREMREMGCQPS 246 (403)
Q Consensus 224 ~~~~~~~a~~~~~~~~~~~~~~~ 246 (403)
..++.+.-.++.+.+.+.|..++
T Consensus 47 ~~~~~~~~~~iv~~Ll~~Gadvn 69 (186)
T 3t8k_A 47 RNNNDEARYKISMFLINKGADIK 69 (186)
T ss_dssp TCSCHHHHHHHHHHHHHTTCCSS
T ss_pred HcCCcchHHHHHHHHHHCCCCCC
Confidence 34444444445555555554443
No 308
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=47.60 E-value=15 Score=28.88 Aligned_cols=57 Identities=11% Similarity=-0.109 Sum_probs=31.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCcH-------HHHHHHHHHHHHc---CChhHHHHHHHHHHH
Q 041804 148 ILRGWFKMSWWGKCREFWEEMDKRGVVKDL-------HSYSIYMDIMCKS---GKPWKAVKLYKEMKK 205 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 205 (403)
.+...+..|+.+.+..+++.+.+.|..++. .-++.|..+ +.. |+.+-+..+++.-..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g~~ 71 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQIDKD 71 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcCCc
Confidence 344556677777777777776666654332 333344333 334 666666655554443
No 309
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.56 E-value=75 Score=22.46 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=31.9
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
.+.+.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445566654432 23344444445 56677777777666545555555444555655553
No 310
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.49 E-value=90 Score=23.37 Aligned_cols=106 Identities=12% Similarity=-0.032 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 041804 143 KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAV 222 (403)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 222 (403)
.+-...+.+..+.++.+. ...+..+.+ .++...-...+.++.+.++.+ +...+..+.. .++..+-...+.++
T Consensus 96 ~vr~~a~~aL~~~~~~~~-~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL 167 (211)
T 3ltm_A 96 WVRQSAAVALGQIGDERA-VEPLIKALK---DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADAL 167 (211)
T ss_dssp HHHHHHHHHHHHHCCGGG-HHHHHHHTT---CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHH-HHHHHHHHh---CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHH
Confidence 334444444444444322 222333332 235445555555555555433 3333333332 23555555556666
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 041804 223 GVSEGVDFAMRVYREMREMGCQPSVVTCNTVIKLLCEN 260 (403)
Q Consensus 223 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 260 (403)
.+.+. +.+...+..+.+. ++..+-...+.++.+.
T Consensus 168 ~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 168 GEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 66555 3344444444442 3444444444444443
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=46.38 E-value=75 Score=22.43 Aligned_cols=60 Identities=12% Similarity=0.028 Sum_probs=35.5
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566665443 234445555556667777788777766545556555555566666654
No 312
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=45.71 E-value=84 Score=22.81 Aligned_cols=61 Identities=13% Similarity=-0.102 Sum_probs=43.7
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCC--CHHHHHHHHH-H-----HHhcCCHHHHHHHHHHHHHc
Q 041804 317 YVMLLRKFGRWGFLRPVFVVWKKMEELGCSP--DEFAYNALVD-A-----LIDKGMLDMARKYDEEMFAK 378 (403)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~g~~~~a~~~~~~m~~~ 378 (403)
|...+.. ...|++-+|-++|+..-...-.+ ....|..||. . ..+.|+...|..++.+....
T Consensus 36 ~~~~i~l-Fn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~ 104 (161)
T 2ijq_A 36 VVHGVRL-YNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQY 104 (161)
T ss_dssp HHHHHHH-HHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3333433 44599999999999996654345 5667777777 2 23589999999999988773
No 313
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=45.56 E-value=17 Score=28.73 Aligned_cols=184 Identities=8% Similarity=-0.036 Sum_probs=93.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCChh-------hHHHHHHHHh--hcCCHHHHHHHHHHHHHcC---------CC-
Q 041804 184 MDIMCKSGKPWKAVKLYKEMKKKGIKMDVV-------AYNTVIRAVG--VSEGVDFAMRVYREMREMG---------CQ- 244 (403)
Q Consensus 184 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~---------~~- 244 (403)
+...++.|+.+....+++.+.+.|..++.. -.+.|..+.. +.|+.+-+..+++.-...+ +.
T Consensus 9 L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~ 88 (260)
T 3jxi_A 9 LFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRD 88 (260)
T ss_dssp HHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCC
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccc
Confidence 344567899999888888888877665533 3345554442 5688877777777654321 10
Q ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChh-----------------hHHHHHHhh--CCHHHHHHHHHHH
Q 041804 245 PSVVTCNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVI-----------------TYHCFFRCL--EKPREILGLFDRM 305 (403)
Q Consensus 245 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-----------------~~~~l~~~~--~~~~~a~~~~~~~ 305 (403)
.+..-.+.| ...+..|+.+-+..+++ .|..++.. -.+.+..+. ++ .++.+.+
T Consensus 89 ~d~~g~t~L-~~A~~~g~~~~v~~Ll~----~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~----~~~v~~L 159 (260)
T 3jxi_A 89 VYYRGQTAL-HIAIERRCKHYVELLVE----KGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQ----PHIVHYL 159 (260)
T ss_dssp SSEESBCHH-HHHHHTTCHHHHHHHHH----TTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTC----HHHHHHH
T ss_pred cccCCCCHH-HHHHHcCCHHHHHHHHh----CCCCcCccccccccCcccccccccCCCCHHHHHHHcCC----HHHHHHH
Confidence 011222333 33456688765555554 34433322 223333333 33 3455566
Q ss_pred HH---cCCCCchh---hHHHHHHHHHhcCC-----cchHHHHHHHHHhcCCC----------CCHHHHHHHHHHHHhcCC
Q 041804 306 IE---SGIRPKMD---TYVMLLRKFGRWGF-----LRPVFVVWKKMEELGCS----------PDEFAYNALVDALIDKGM 364 (403)
Q Consensus 306 ~~---~~~~~~~~---~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~g~ 364 (403)
.+ .|..++.. -.+.|..++. .|+ .+...++++.+.+.|.. .|..-.+.| ...++.|+
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~-~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL-~~A~~~g~ 237 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVA-IADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL-MMAAKTGK 237 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHH-HCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH-HHHHHTTC
T ss_pred HhccccCCCCcccCCCCCcHHHHHHH-hccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH-HHHHHcCC
Confidence 66 56555432 2334444333 232 11123444444444322 222223333 44466788
Q ss_pred HHHHHHHHHHHHHc
Q 041804 365 LDMARKYDEEMFAK 378 (403)
Q Consensus 365 ~~~a~~~~~~m~~~ 378 (403)
.+-+..++++-...
T Consensus 238 ~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 238 IGIFQHIIRREIAD 251 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCc
Confidence 87777777665544
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=45.49 E-value=74 Score=22.12 Aligned_cols=36 Identities=22% Similarity=0.214 Sum_probs=18.2
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCc
Q 041804 227 GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGR 262 (403)
Q Consensus 227 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 262 (403)
..-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 444555555555555444444444444555555443
No 315
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=45.28 E-value=74 Score=22.47 Aligned_cols=34 Identities=21% Similarity=0.219 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 041804 228 VDFAMRVYREMREMGCQPSVVTCNTVIKLLCENG 261 (403)
Q Consensus 228 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 261 (403)
.-.|.++++.+.+.+...+..|.-.-+..+...|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 3344555555544444444444333444444444
No 316
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=44.49 E-value=1.3e+02 Score=24.66 Aligned_cols=68 Identities=18% Similarity=0.204 Sum_probs=42.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCChh
Q 041804 317 YVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM--LDMARKYDEEMFAKGLSAKPR 385 (403)
Q Consensus 317 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~ 385 (403)
...++.-|...|+.++|...++++..-.+. ...+...+..++-+.++ .+...+++..+.+.|+-+...
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~q 238 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVDQ 238 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 557788888999999999999988631111 12334444445554433 345667777777666654333
No 317
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=44.32 E-value=1e+02 Score=23.34 Aligned_cols=54 Identities=6% Similarity=0.036 Sum_probs=29.2
Q ss_pred cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC-----HHHHHHHHHHHHHcCCC
Q 041804 190 SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG-----VDFAMRVYREMREMGCQ 244 (403)
Q Consensus 190 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~~ 244 (403)
-.+++.|+-++-+|++.| .|.-..-..++.+.-..|. ...|...++.....|.+
T Consensus 27 GSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 85 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLP 85 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 456777777777777777 5554444445544444332 22344444444555543
No 318
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=43.97 E-value=1.5e+02 Score=25.09 Aligned_cols=76 Identities=12% Similarity=0.024 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 041804 144 IYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK--PWKAVKLYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 144 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
....++.-|...|+.++|.+.++++...+. -.......++......++ .+.+-.++..+...++-+.......+..
T Consensus 14 ~~~~ii~EY~~~~D~~Ea~~~l~eL~~p~~-~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~~~ls~~~~~~Gf~~ 91 (364)
T 3l6a_A 14 LTETVVTEYLNSGNANEAVNGVREMRAPKH-FLPEMLSKVIILSLDRSDEDKEKASSLISLLKQEGIATSDNFMQAFLN 91 (364)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCCGG-GHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCchh-hHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
Confidence 357788999999999999999999864210 011223333333333332 2455666777776655444333333333
No 319
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.54 E-value=1e+02 Score=24.59 Aligned_cols=111 Identities=9% Similarity=-0.092 Sum_probs=51.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh---hhHHHHHHHHhhc
Q 041804 149 LRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV---VAYNTVIRAVGVS 225 (403)
Q Consensus 149 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~ 225 (403)
+...+..|+.+-+..++ +.|..++...-.+.+...+..|+.+-+ +.+.+.|..++. .-.+.|. ..+..
T Consensus 35 L~~A~~~g~~~~v~~Ll----~~g~~~~~~~g~t~L~~A~~~g~~~~v----~~Ll~~ga~~~~~d~~g~t~L~-~A~~~ 105 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLL----NAGALKNLLENEFPLHQAATLEDTKIV----KILLFSGLDDSQFDDKGNTALY-YAVDS 105 (285)
T ss_dssp HHHHHHTTCHHHHHHHH----HTTGGGSCCTTCCHHHHHTTSSSCHHH----HHHHHTTCCTTCCCTTSCCHHH-HHHHT
T ss_pred HHHHHHcCCHHHHHHHH----hCCCCCCCCCCCCHHHHHHHcCCHHHH----HHHHHCCCCCCCcCCCCCcHHH-HHHHc
Confidence 34445567665544444 344333322112334444566666544 344445554432 2233333 33456
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 226 EGVDFAMRVYREMREMGCQPSVV---TCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 226 ~~~~~a~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
|+.+-+..++ +.|..++.. .+.+.+...+..|+.+-+..+++.
T Consensus 106 g~~~~v~~Ll----~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~ 151 (285)
T 3kea_A 106 GNMQTVKLFV----KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE 151 (285)
T ss_dssp TCHHHHHHHH----HHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT
T ss_pred CCHHHHHHHH----hcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 7765544444 445444332 212344445566776555444443
No 320
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=43.15 E-value=29 Score=26.09 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=10.2
Q ss_pred HHHHhcCChHHHHHHHHHHhh
Q 041804 75 KRYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 75 ~~~~~~~~~~~a~~~~~~~~~ 95 (403)
..|.+.|.+++|.++|++.-.
T Consensus 125 ~VCiekg~Fk~A~eiLkr~f~ 145 (211)
T 3bqo_A 125 AVCMENGNFKEAEEVFERIFG 145 (211)
T ss_dssp HHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHccchHHHHHHHHHHhc
Confidence 344555555555555555433
No 321
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=43.14 E-value=81 Score=21.91 Aligned_cols=35 Identities=14% Similarity=0.039 Sum_probs=14.8
Q ss_pred CcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041804 329 FLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363 (403)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (403)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 33 ~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 67 (136)
T 1mzb_A 33 RHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAG 67 (136)
T ss_dssp CSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
Confidence 34445555555544433333333333334444333
No 322
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=42.70 E-value=89 Score=22.23 Aligned_cols=60 Identities=7% Similarity=0.031 Sum_probs=32.9
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 304 RMIESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 344566654432 334455555555667777777777666544555555555566665554
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=42.40 E-value=1e+02 Score=22.76 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=31.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHH---HHHHHHHHHHH-cCChhHHHHHHHHHHHcCCCCC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLH---SYSIYMDIMCK-SGKPWKAVKLYKEMKKKGIKMD 211 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~ 211 (403)
+.+...+..|+.+.-.++.+.+.+.|..++.. -++.|..++.. ..+.....++.+.+.+.|..++
T Consensus 40 T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 40 NILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp THHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS
T ss_pred CHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC
Confidence 34444555565555556666666666555432 22233222222 1223334555666666665544
No 324
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.99 E-value=91 Score=22.16 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=16.0
Q ss_pred CcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041804 329 FLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363 (403)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (403)
..-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 32 ~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 66 (150)
T 2w57_A 32 QHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAG 66 (150)
T ss_dssp SSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 44455555555554443334444333344444444
No 325
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=41.47 E-value=85 Score=22.33 Aligned_cols=60 Identities=18% Similarity=0.319 Sum_probs=32.3
Q ss_pred HHHcCCCCChhhHHHHHHHHhhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCcH
Q 041804 203 MKKKGIKMDVVAYNTVIRAVGVSE-GVDFAMRVYREMREMGCQPSVVTCNTVIKLLCENGRV 263 (403)
Q Consensus 203 ~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 263 (403)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 8 l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 8 LKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 445555544432 23344444444 4556666666666665555555555556666666643
No 326
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=40.99 E-value=1.3e+02 Score=23.73 Aligned_cols=49 Identities=12% Similarity=-0.148 Sum_probs=24.7
Q ss_pred CCHHhHHHHHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCC
Q 041804 29 HTTDTYNSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHL 82 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 82 (403)
++...-...+..+.+.+.. .+...+..+... ++...-...+.++...+.
T Consensus 35 ~~~~vr~~A~~~L~~~~~~-~~~~~L~~~l~d----~~~~vR~~A~~aL~~l~~ 83 (280)
T 1oyz_A 35 HNSLKRISSARVLQLRGGQ-DAVRLAIEFCSD----KNYIRRDIGAFILGQIKI 83 (280)
T ss_dssp SSHHHHHHHHHHHHHHCCH-HHHHHHHHHHTC----SSHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHccCCc-hHHHHHHHHHcC----CCHHHHHHHHHHHHHhcc
Confidence 4444444555566665543 344444444432 455555555566666553
No 327
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=40.94 E-value=57 Score=23.18 Aligned_cols=13 Identities=8% Similarity=0.151 Sum_probs=6.3
Q ss_pred hhcCCHHHHHHHH
Q 041804 223 GVSEGVDFAMRVY 235 (403)
Q Consensus 223 ~~~~~~~~a~~~~ 235 (403)
++.|+.+.+..++
T Consensus 16 ~~~g~~~~v~~ll 28 (165)
T 3twr_A 16 AKAGDVETVKKLC 28 (165)
T ss_dssp HHHTCHHHHHHHC
T ss_pred HHhCCHHHHHHHH
Confidence 3455555444444
No 328
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=39.47 E-value=1.8e+02 Score=24.86 Aligned_cols=86 Identities=7% Similarity=-0.072 Sum_probs=39.6
Q ss_pred HHHHHHccCChhHHHHHHHHhhhCCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC
Q 041804 37 VIDILGKFFEFDLSWNLIHRMKDNPSSIPNHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH 116 (403)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 116 (403)
.+...+..|+.+-+.-+++.-.... ..+.. -.+.+...+..|+.+-+.-+++.-......+....+. +...+..|+
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~-g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~-L~~A~~~g~ 125 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVN--AKAKD-DQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP-LHIAAREGH 125 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTT-SCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH-HHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCC--CCCCC-CCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCC
Confidence 3455566777776666665422211 01111 1123444456677655544444321111122222222 233455677
Q ss_pred HHHHHHHHhc
Q 041804 117 VIEAQELCFG 126 (403)
Q Consensus 117 ~~~a~~~~~~ 126 (403)
.+-+..+++.
T Consensus 126 ~~~v~~Ll~~ 135 (437)
T 1n11_A 126 VETVLALLEK 135 (437)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 7777776654
No 329
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=39.45 E-value=2e+02 Score=25.32 Aligned_cols=82 Identities=11% Similarity=-0.001 Sum_probs=40.1
Q ss_pred CChHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChh
Q 041804 81 HLVNEAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWG 159 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 159 (403)
.+.+-|.++- .+.|++ -...|..-...+...|++++|.++.-.... +.-.+..+.+.+-..=..-|+..
T Consensus 343 ~n~~lA~~lA---~R~~LpGAd~L~~~~F~~l~~~g~y~~AA~~aA~sP~-------giLRt~~Ti~rFk~vp~~pgq~s 412 (494)
T 1bpo_A 343 QNPDLALRMA---VRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPK-------GILRTPDTIRRFQSVPAQPGQTS 412 (494)
T ss_dssp CCHHHHHHHH---HHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGG-------GSSCSHHHHHHHTTSCCCTTSCC
T ss_pred CCHHHHHHHH---HhcCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhCcc-------ccccCHHHHHHHhcCCCCCCCCC
Confidence 4444444433 334444 334455556666667777777766544433 33444444443333333334444
Q ss_pred HHHHHHHHHHhCC
Q 041804 160 KCREFWEEMDKRG 172 (403)
Q Consensus 160 ~a~~~~~~~~~~~ 172 (403)
-.+.+|..+.+.|
T Consensus 413 plL~YF~~Ll~~g 425 (494)
T 1bpo_A 413 PLLQYFGILLDQG 425 (494)
T ss_dssp HHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccC
Confidence 4455555555443
No 330
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=39.06 E-value=1.7e+02 Score=24.38 Aligned_cols=23 Identities=9% Similarity=0.008 Sum_probs=14.9
Q ss_pred hHHHHHHHHHccCChhHHHHHHH
Q 041804 33 TYNSVIDILGKFFEFDLSWNLIH 55 (403)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~ 55 (403)
.|-++..-|.+.+++++|++++-
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~ 59 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILA 59 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHH
Confidence 45555666677777777777654
No 331
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=38.66 E-value=83 Score=20.72 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=40.9
Q ss_pred CChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhH
Q 041804 81 HLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGK 160 (403)
Q Consensus 81 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 160 (403)
...++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.. ..||...|.+|.. .+.|-.++
T Consensus 20 H~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----------c~pdlepw~ALce--~rlGl~s~ 86 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ-DEAARLIRISSLANQGRYQEALAFAHGN----------PWPALEPWFALCE--WHLGLGAA 86 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHGGGTTC----------CCGGGHHHHHHHH--HHTTCHHH
T ss_pred hHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----------CCchHHHHHHHHH--HhcccHHH
Confidence 345566666666655444 2222223334455667777776654432 2455555555433 34555566
Q ss_pred HHHHHHHHHhCC
Q 041804 161 CREFWEEMDKRG 172 (403)
Q Consensus 161 a~~~~~~~~~~~ 172 (403)
+...+.++...|
T Consensus 87 le~rL~~la~sg 98 (115)
T 2uwj_G 87 LDRRLAGLGGSS 98 (115)
T ss_dssp HHHHHHHHHTCS
T ss_pred HHHHHHHHHhCC
Confidence 666555555543
No 332
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=37.99 E-value=1.1e+02 Score=21.94 Aligned_cols=47 Identities=15% Similarity=0.106 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 84 NEAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 84 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
+.+..+|..|...++. -...|......+-..|++.+|.++|+.-.+.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~ 130 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQN 130 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3477888888877765 6677778888888888888888888877666
No 333
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=37.73 E-value=1.2e+02 Score=22.38 Aligned_cols=50 Identities=16% Similarity=-0.031 Sum_probs=32.2
Q ss_pred hcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 041804 113 EYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGVV 174 (403)
Q Consensus 113 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 174 (403)
-.|....++-++..... .+..-|.. -+|.+..++..|...++.+....+.
T Consensus 45 yngEY~R~Lf~L~~lNT----------~Ts~YYk~--LCy~klKdYkkA~~~le~il~~kvd 94 (242)
T 3kae_A 45 LNGEYTRALFHLHKLNT----------CTSKYYES--LCYKKKKDYKKAIKSLESILEGKVE 94 (242)
T ss_dssp HTTCHHHHHHHHHTCCB----------HHHHHHHH--HHHHHTTCHHHHHHHHHHHHTTCSB
T ss_pred hcchHhHHHHHHHhcch----------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence 46778777766544321 11222222 3667889999999999999865544
No 334
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.62 E-value=1.3e+02 Score=22.71 Aligned_cols=20 Identities=5% Similarity=-0.138 Sum_probs=12.6
Q ss_pred HHHHHHhcCChhHHHHHHHH
Q 041804 148 ILRGWFKMSWWGKCREFWEE 167 (403)
Q Consensus 148 l~~~~~~~~~~~~a~~~~~~ 167 (403)
.+...++.|+.+....++..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~ 28 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILA 28 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHh
Confidence 35555666777776666654
No 335
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.43 E-value=40 Score=19.54 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=11.5
Q ss_pred cCcHHHHHHHHHhchhcCCCC
Q 041804 260 NGRVREAYAVLAEMPKKGCVP 280 (403)
Q Consensus 260 ~g~~~~a~~~~~~~~~~~~~p 280 (403)
.|+++.|+..+-.|...+..|
T Consensus 36 ~gdvd~aI~~LL~m~~~~~~~ 56 (59)
T 1wgl_A 36 RGNKDAAINSLLQMGEEPSGP 56 (59)
T ss_dssp TTCHHHHHHHHHHSSCCCCSC
T ss_pred CCCHHHHHHHHHcCcCCCCCC
Confidence 555666666665555444444
No 336
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=37.43 E-value=88 Score=20.64 Aligned_cols=77 Identities=9% Similarity=-0.014 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 82 LVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 82 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
..++|..+-+.+...+. ...+--+-+..+...|++++|..+.+.. ..||...|.+|.. .+.|..+++
T Consensus 22 ~HqEA~tIAdwL~~~~~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~----------c~pdlepw~ALce--~rlGl~s~l 88 (116)
T 2p58_C 22 YHEEANCIAEWLHLKGE-EEAVQLIRLSSLMNRGDYASALQQGNKL----------AYPDLEPWLALCE--YRLGLGSAL 88 (116)
T ss_dssp CHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTTCHHHHHHHHTTS----------CCGGGHHHHHHHH--HHHTCHHHH
T ss_pred HHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHcchhHHHHHHhcCCC----------CCchHHHHHHHHH--HhcccHHHH
Confidence 44555555555554443 2222222233344566666666554432 1355555544432 234444555
Q ss_pred HHHHHHHHhC
Q 041804 162 REFWEEMDKR 171 (403)
Q Consensus 162 ~~~~~~~~~~ 171 (403)
...+.++...
T Consensus 89 e~rL~~la~s 98 (116)
T 2p58_C 89 ESRLNRLARS 98 (116)
T ss_dssp HHHHHHHTTC
T ss_pred HHHHHHHHhC
Confidence 5555444444
No 337
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=37.43 E-value=71 Score=19.60 Aligned_cols=60 Identities=10% Similarity=0.197 Sum_probs=37.6
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcC-CcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC
Q 041804 304 RMIESGIRPKMDTYVMLLRKFGRWG-FLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 304 ~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 364 (403)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....++.+.+.|-
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Gl 67 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3456676655543 34455555554 566778888888776555566666666677766664
No 338
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=37.08 E-value=95 Score=21.70 Aligned_cols=44 Identities=11% Similarity=0.077 Sum_probs=20.4
Q ss_pred HHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041804 320 LLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363 (403)
Q Consensus 320 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (403)
++..+...++.-.|.++++.+.+.+...+..|.-.-++.+...|
T Consensus 19 Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 19 VSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCC
Confidence 34444444445555555555554443344444433344444444
No 339
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=36.71 E-value=70 Score=20.74 Aligned_cols=31 Identities=13% Similarity=0.460 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
.+.|.++++.+..+|.. +|..++.++...|+
T Consensus 53 ~~~ar~Lld~L~~rG~~----Af~~F~~aL~et~~ 83 (97)
T 3ygs_P 53 RDQARQLIIDLETRGSQ----ALPLFISCLEDTGQ 83 (97)
T ss_dssp HHHHHHHHHHHTTSCTT----HHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHcChH----HHHHHHHHHHHcCc
Confidence 34444444444444333 44444444443333
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=36.45 E-value=1e+02 Score=21.18 Aligned_cols=43 Identities=7% Similarity=0.037 Sum_probs=20.5
Q ss_pred HHHHHhcCCcchHHHHHHHHHhcCCCCCHHHHHHHHHHHHhcC
Q 041804 321 LRKFGRWGFLRPVFVVWKKMEELGCSPDEFAYNALVDALIDKG 363 (403)
Q Consensus 321 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 363 (403)
+..+...+..-.|.++++.+.+.+...+..|.-..++.+...|
T Consensus 17 l~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 17 STLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 3334444445555555555555443344444444444444444
No 341
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=35.16 E-value=1.5e+02 Score=24.66 Aligned_cols=12 Identities=8% Similarity=0.146 Sum_probs=4.9
Q ss_pred hcCCHHHHHHHH
Q 041804 361 DKGMLDMARKYD 372 (403)
Q Consensus 361 ~~g~~~~a~~~~ 372 (403)
+.|+.+-+..++
T Consensus 253 ~~g~~~~v~~Ll 264 (364)
T 3ljn_A 253 RAAMVLLTKELL 264 (364)
T ss_dssp HTCCHHHHHHHH
T ss_pred HhChHHHHHHHH
Confidence 344444333333
No 342
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=35.02 E-value=1.5e+02 Score=22.49 Aligned_cols=63 Identities=10% Similarity=-0.004 Sum_probs=40.8
Q ss_pred HHHHHHH---hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCh-----hHHHHHHHHHHHcCCCC
Q 041804 147 MILRGWF---KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKP-----WKAVKLYKEMKKKGIKM 210 (403)
Q Consensus 147 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~~~~ 210 (403)
.+++++. +-.+.+.|+-++-+|.+.| .|.-..-..++.+.-.-|.- ..|...++.....|.+-
T Consensus 16 d~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 16 DVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 3444443 4578999999999999999 77666666666666555532 24445555555556543
No 343
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=34.73 E-value=1.4e+02 Score=22.07 Aligned_cols=17 Identities=24% Similarity=0.222 Sum_probs=8.3
Q ss_pred ChhhHHHHHHHHhhcCC
Q 041804 211 DVVAYNTVIRAVGVSEG 227 (403)
Q Consensus 211 ~~~~~~~ll~~~~~~~~ 227 (403)
+..+-...+.++.+.++
T Consensus 151 ~~~vr~~A~~aL~~~~~ 167 (201)
T 3ltj_A 151 DGWVRQSAADALGEIGG 167 (201)
T ss_dssp SHHHHHHHHHHHHHHCS
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 44444445555555544
No 344
>1krq_A Ferritin; H-chain like four-helix bundle, binding protein; 2.70A {Campylobacter jejuni} SCOP: a.25.1.1
Probab=34.57 E-value=65 Score=23.46 Aligned_cols=19 Identities=0% Similarity=0.060 Sum_probs=11.5
Q ss_pred hhHHHHHHHHHHhCCCCCc
Q 041804 158 WGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~ 176 (403)
.+.|.++++.+...|..|+
T Consensus 51 ~~HA~~l~~~i~~~gG~~~ 69 (167)
T 1krq_A 51 SDHAKKLITYLNETDSHVE 69 (167)
T ss_dssp HHHHHHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHcCCCcc
Confidence 3556667777766665543
No 345
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=34.53 E-value=1.1e+02 Score=23.19 Aligned_cols=25 Identities=8% Similarity=0.082 Sum_probs=15.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKR 171 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~ 171 (403)
..+..|.+.|.+++|.++|++....
T Consensus 122 qAV~VCiekg~Fk~A~eiLkr~f~~ 146 (211)
T 3bqo_A 122 QAIAVCMENGNFKEAEEVFERIFGD 146 (211)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC--
T ss_pred HHHHHHHHccchHHHHHHHHHHhcC
Confidence 3445567777777777777775443
No 346
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=34.26 E-value=1.5e+02 Score=22.38 Aligned_cols=31 Identities=6% Similarity=-0.154 Sum_probs=15.8
Q ss_pred CChhHHHHHHHHHHhCCCCCcHHHHHHHHHH
Q 041804 156 SWWGKCREFWEEMDKRGVVKDLHSYSIYMDI 186 (403)
Q Consensus 156 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 186 (403)
.+.+.|+-++-+|++.|..|.-..-..++-+
T Consensus 21 SDpDAAly~LaRMl~~GEDp~~IaRRLvi~A 51 (201)
T 3bge_A 21 SAPDAALYWYARILTAGGDPLYVARRLLAIA 51 (201)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4555556666666655555444433333333
No 347
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=34.11 E-value=1.7e+02 Score=22.97 Aligned_cols=57 Identities=7% Similarity=-0.071 Sum_probs=34.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCC-------cHHHHHHHHHHHH--HcCChhHHHHHHHHH
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVK-------DLHSYSIYMDIMC--KSGKPWKAVKLYKEM 203 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~--~~~~~~~a~~~~~~~ 203 (403)
..+...++.|+.+.+..+++...+.+... +..-++.|..+.. +.|+.+-+..+++.-
T Consensus 15 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 15 RSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp HHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 34455567788888888888776655332 3334455555543 246666666666553
No 348
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=33.90 E-value=1.7e+02 Score=24.31 Aligned_cols=44 Identities=20% Similarity=0.331 Sum_probs=28.3
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 041804 199 LYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMG 242 (403)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 242 (403)
+++.+.+.|+.|...++..++..+.+.=.++.+.++++.+...|
T Consensus 215 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg 258 (334)
T 2qq8_A 215 LFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDG 258 (334)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcC
Confidence 34445555666666666666666666666677777777666654
No 349
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=33.11 E-value=1.4e+02 Score=21.61 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=29.4
Q ss_pred HcCCCCchhhHHHHHHHHHhcCCcchHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhcCC
Q 041804 307 ESGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKMEEL--GCSPDEFAYNALVDALIDKGM 364 (403)
Q Consensus 307 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 364 (403)
+.|.+++.. -..++..+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 26 ~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 26 QGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 455554332 334445555555566666666666554 434454444444455555553
No 350
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=32.87 E-value=2.2e+02 Score=23.94 Aligned_cols=59 Identities=15% Similarity=-0.028 Sum_probs=34.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCC--HHHHHHHHhccc
Q 041804 69 TFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKH--VIEAQELCFGEN 128 (403)
Q Consensus 69 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~ 128 (403)
....++.-|...++.++|...++++..-. ........++......++ -+.+-.++..+.
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~-~~~~~v~~~I~~aLdr~~~erE~~s~LLs~L~ 116 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE-MKSGVPVLAVSLALEGKASHREMTSKLLSDLC 116 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG-GGGGHHHHHHHHHTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch-hHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 45667888888899999999888765311 144444444444333332 233444555544
No 351
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=32.56 E-value=1.6e+02 Score=22.22 Aligned_cols=45 Identities=16% Similarity=0.053 Sum_probs=29.0
Q ss_pred HHHHHHH---HcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcC
Q 041804 182 IYMDIMC---KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSE 226 (403)
Q Consensus 182 ~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 226 (403)
.+|+++. +-++++.|+-++-+|++.|-.|.-..-..++.+.-..|
T Consensus 9 d~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 9 DLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 3455554 35788888888888888876665555555555544333
No 352
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=32.40 E-value=1.7e+02 Score=22.38 Aligned_cols=62 Identities=11% Similarity=0.082 Sum_probs=32.1
Q ss_pred HHHHHHHH---cCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC-----HHHHHHHHHHHHHcCC
Q 041804 182 IYMDIMCK---SGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG-----VDFAMRVYREMREMGC 243 (403)
Q Consensus 182 ~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~~~~~~~ 243 (403)
.+|+++.+ -++++.|+-++-+|++.|-.|.-..-..++.+.-..|. ...|...++.....|.
T Consensus 37 d~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~ 106 (213)
T 3ctd_A 37 DVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGF 106 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCC
Confidence 34444433 45677777777777777655555444444444433332 2334444444444444
No 353
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=32.37 E-value=93 Score=21.75 Aligned_cols=47 Identities=9% Similarity=0.192 Sum_probs=28.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 146 NMILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 146 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
..++..+...+..-.|.++++.+.+.+...+..|..--+..+...|-
T Consensus 17 ~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 17 AAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 34455555555566677777777766665565555555555555553
No 354
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=32.34 E-value=1.4e+02 Score=21.39 Aligned_cols=25 Identities=12% Similarity=-0.081 Sum_probs=14.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccc
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGEN 128 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~ 128 (403)
...++.-|...++.++|...++++.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~ 36 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELE 36 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhC
Confidence 3445555666666666666665553
No 355
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=32.28 E-value=1.5e+02 Score=26.82 Aligned_cols=69 Identities=7% Similarity=-0.018 Sum_probs=31.9
Q ss_pred HHHHHHHHHhhcCCC-cHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCChhHH
Q 041804 85 EAMGTFNKLDEFGLK-DEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSWWGKC 161 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 161 (403)
........+..+-+- +..-..-++..|.+.|-.+.|.+++..+-... ..+...+ ..+..|+++|+++.+
T Consensus 499 ~gr~~IselLpr~Pl~Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~-------l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 499 AKKMVIAELLPHYPFVTNDDIEWMLSICVEWRLPEIAKEIYTTLGNQM-------LSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp HHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHC--------------------------------
T ss_pred HHHHHHHHHhccCCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH-------HHCccHH-HHHHHHHHcCChhhc
Confidence 344444444443333 77778888999999999999999988776531 2222334 556677777776654
No 356
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=31.80 E-value=1e+02 Score=21.17 Aligned_cols=46 Identities=20% Similarity=0.203 Sum_probs=26.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Q 041804 147 MILRGWFKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK 192 (403)
Q Consensus 147 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 192 (403)
.++..+...+..-.|.++++.+.+.+...+..|..-.++.+...|-
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 3444444555566677777777666555555555555555555543
No 357
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=31.64 E-value=37 Score=19.66 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=18.8
Q ss_pred cCChhHHHHHHHHhhhCCCCCCCH
Q 041804 44 FFEFDLSWNLIHRMKDNPSSIPNH 67 (403)
Q Consensus 44 ~~~~~~a~~~~~~~~~~~~~~~~~ 67 (403)
.=+++.|...|..+...+.++|+.
T Consensus 33 ~Wd~~~A~~~F~~l~~~~~IP~eA 56 (59)
T 1oai_A 33 NWDYTRSAQAFTHLKAKGEIPEVA 56 (59)
T ss_dssp TTCHHHHHHHHHHHHHTTCSCGGG
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHH
Confidence 348999999999998877666653
No 358
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=30.81 E-value=1.6e+02 Score=23.04 Aligned_cols=80 Identities=10% Similarity=0.008 Sum_probs=40.1
Q ss_pred HHHHHHHHcCCCCchhh---HHHHHHHHHhcCCcchHHHHHHHHHhcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHH
Q 041804 300 GLFDRMIESGIRPKMDT---YVMLLRKFGRWGFLRPVFVVWKKMEELGCSPDEFAY--NALVDALIDKGMLDMARKYDEE 374 (403)
Q Consensus 300 ~~~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 374 (403)
++++.+.+.|..++... -.+.+...+..|+.+ +++.+.+.|..++.... .+-+...++.|+.+ +++.
T Consensus 172 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~----~v~~ 243 (282)
T 1oy3_D 172 EMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS----VLELLLKAGADPTARMYGGRTPLGSALLRPNPI----LARL 243 (282)
T ss_dssp HHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH----HHHH
T ss_pred HHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHH----HHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH----HHHH
Confidence 44555556666554432 223344445666654 44445555655543321 12234445666653 5555
Q ss_pred HHHcCCCCChhhH
Q 041804 375 MFAKGLSAKPREE 387 (403)
Q Consensus 375 m~~~~~~p~~~~~ 387 (403)
+++.|..|+....
T Consensus 244 Ll~~ga~~~~~~~ 256 (282)
T 1oy3_D 244 LRAHGAPEPEDGG 256 (282)
T ss_dssp HHHTTCCCCCCC-
T ss_pred HHHcCCCcCcCCC
Confidence 6677777665433
No 359
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=30.64 E-value=76 Score=17.90 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHH
Q 041804 334 FVVWKKMEELGCSPDEFAYNALVDALIDKGM--LDMARKYDEEM 375 (403)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~m 375 (403)
.+.++.+.+.|+++. ....++.+.|. .+.|++++.+|
T Consensus 10 ~qmlq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 10 RQMLQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 344555555555442 22344555555 66777766665
No 360
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=30.40 E-value=1.6e+02 Score=21.47 Aligned_cols=46 Identities=11% Similarity=0.143 Sum_probs=31.1
Q ss_pred HHHHHHHHHhhcCCC--cHHHHHHHHHHHHhcCCHHHHHHHHhccccc
Q 041804 85 EAMGTFNKLDEFGLK--DEVSYCNLVDALCEYKHVIEAQELCFGENKN 130 (403)
Q Consensus 85 ~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 130 (403)
.+..+|..|...++. -...|......+-..|++.+|.++|..-...
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 356667777666655 5566666666777777777777777766655
No 361
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=29.89 E-value=1.7e+02 Score=21.73 Aligned_cols=18 Identities=17% Similarity=0.091 Sum_probs=8.6
Q ss_pred CCHHhHHHHHHHHHccCC
Q 041804 29 HTTDTYNSVIDILGKFFE 46 (403)
Q Consensus 29 ~~~~~~~~li~~~~~~~~ 46 (403)
++...-...+..+.+.+.
T Consensus 31 ~~~~vR~~A~~~L~~~~~ 48 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGD 48 (211)
T ss_dssp SSHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 344444444455555544
No 362
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=29.83 E-value=1.6e+02 Score=21.36 Aligned_cols=60 Identities=10% Similarity=-0.057 Sum_probs=37.1
Q ss_pred HHHHHHHHHccCChhHHHHHHHHhhhCCCCCC--CHHHHHHHHH------HHHhcCChHHHHHHHHHHhh
Q 041804 34 YNSVIDILGKFFEFDLSWNLIHRMKDNPSSIP--NHATFRIMFK------RYVTAHLVNEAMGTFNKLDE 95 (403)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~------~~~~~~~~~~a~~~~~~~~~ 95 (403)
|...+..+-. |++-+|-++++..-... ..+ ....|..||. ...+.|+...|..++.+...
T Consensus 36 ~~~~i~lFn~-g~yfeaHEvLEe~W~~~-~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 36 VVHGVRLYNS-GEFHESHDCFEDEWYNY-GRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHTTTT-CSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4444444444 88888888888877654 234 4455666666 22356777777777776644
No 363
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.57 E-value=4.1e+02 Score=26.02 Aligned_cols=131 Identities=8% Similarity=-0.073 Sum_probs=73.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHH
Q 041804 73 MFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGW 152 (403)
Q Consensus 73 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 152 (403)
++..+...|..+-|.++. ..-+.++..--.+..+|...|++++|...|+++............++
T Consensus 816 l~~~L~~~~~~~~a~eL~----~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~----------- 880 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI----GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVL----------- 880 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG----GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGG-----------
T ss_pred HHHHHHHhcHHHHHHHHH----hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccch-----------
Confidence 555666677776655433 22223555556688889999999999999998765321110000011
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCh----hhHHHHHHHHhhcC
Q 041804 153 FKMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDV----VAYNTVIRAVGVSE 226 (403)
Q Consensus 153 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~ 226 (403)
.....++..... ......-|..++..+-+.+.++.+.++-+..++.--.-|. ..|+.++++.+..|
T Consensus 881 ------~~~~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 881 ------REFQEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp ------HHHHHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ------hhhhhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011111111110 0112346788888888888888888887777765212222 24566666665443
No 364
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=29.45 E-value=1.3e+02 Score=20.26 Aligned_cols=75 Identities=16% Similarity=0.146 Sum_probs=42.5
Q ss_pred HHHHHHHHHhchhcCCCCChhhHHHHHHhhCC-HHHHHHHHHHHHH-cCCCCchhhHHHHHHHHHhcCCcchHHHHHHHH
Q 041804 263 VREAYAVLAEMPKKGCVPDVITYHCFFRCLEK-PREILGLFDRMIE-SGIRPKMDTYVMLLRKFGRWGFLRPVFVVWKKM 340 (403)
Q Consensus 263 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 340 (403)
+.+|..-+++.... .+|......++..+.. .+.+.++.+...+ .|+ .+.++...++...+.|-.+.. +.|..|
T Consensus 4 ~~~al~~L~e~~~~--~~~~~~~dg~i~~fe~t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~w~~m 78 (119)
T 1wty_A 4 LARAVERLKAALER--PKDEFIRDSAIQRFEFTFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PFWLEM 78 (119)
T ss_dssp HHHHHHHHHHHHSS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HHHHHH
T ss_pred HHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HHHHHH
Confidence 45555555555433 3455555555555532 4455555555553 455 355677777777777776555 556666
Q ss_pred Hh
Q 041804 341 EE 342 (403)
Q Consensus 341 ~~ 342 (403)
.+
T Consensus 79 ~~ 80 (119)
T 1wty_A 79 LE 80 (119)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 365
>1eum_A Ferritin 1; ECFTNA, metal binding protein; 2.05A {Escherichia coli} SCOP: a.25.1.1
Probab=29.22 E-value=1.6e+02 Score=21.21 Aligned_cols=106 Identities=9% Similarity=0.045 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYRE 237 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (403)
.+.|.++++.+...|..|+...... -...+....+.++........ -...|..++..+...+++..+.- ++.
T Consensus 51 ~~HA~~l~~~i~~~gg~~~l~~i~~------p~~~~~~~~e~l~~al~~E~~-~~~~~~~l~~~a~~~~D~~~~~f-l~~ 122 (165)
T 1eum_A 51 MTHMQRLFDYLTDTGNLPRINTVES------PFAEYSSLDELFQETYKHEQL-ITQKINELAHAAMTNQDYPTFNF-LQW 122 (165)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCC------CCCCCSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCC------CCCCCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCChhHHHH-HHH
Confidence 4566777777776665544322100 001223334444443332111 22235666666665666543332 223
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHh
Q 041804 238 MREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAE 272 (403)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 272 (403)
+.+..+. .......++..+.+.|....+.-+|++
T Consensus 123 ~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~ 156 (165)
T 1eum_A 123 YVSEQHE-EEKLFKSIIDKLSLAGKSGEGLYFIDK 156 (165)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHcCCCccchhHHhH
Confidence 3322111 333444455555555554444555544
No 366
>1s3q_A Ferritin; ferroxidase, four helix bundle, iron storage, metal binding; 2.10A {Archaeoglobus fulgidus} SCOP: a.25.1.1 PDB: 1sq3_A 3kx9_A
Probab=28.64 E-value=1.7e+02 Score=21.35 Aligned_cols=108 Identities=6% Similarity=-0.015 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHH
Q 041804 158 WGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYRE 237 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 237 (403)
.+.|.++++.+..+|..|+....... ...+....+.++...... .--...++.++..+...+|+... .+++.
T Consensus 53 ~~HA~~l~~~i~~~gg~~~l~~i~~p------~~~~~~~~e~le~aL~~E-~~v~~~~~~l~~~a~~~~D~~t~-~fle~ 124 (173)
T 1s3q_A 53 LMHAMKMFDFVSERGGRVKLYAVEEP------PSEWDSPLAAFEHVYEHE-VNVTKRIHELVEMAMQEKDFATY-NFLQW 124 (173)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCBCCC------CCCCSSHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTCHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccCCCCCC------CCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcCChhHH-HHHHH
Confidence 45677777777777766543221100 112233444444443321 11233455666666656665432 22333
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhch
Q 041804 238 MREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMP 274 (403)
Q Consensus 238 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 274 (403)
+.+..+. .......++..+.+.|....+.-+|++-.
T Consensus 125 ~l~eq~e-~~~~l~~~l~~l~~~g~~~~g~~~~D~~l 160 (173)
T 1s3q_A 125 YVAEQVE-EEASALDIVEKLRLIGEDKRALLFLDKEL 160 (173)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhCCCcchHhHHhHHH
Confidence 3322111 23334444555555554445555665543
No 367
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=28.50 E-value=1.1e+02 Score=21.21 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=10.7
Q ss_pred HHHhcCCHHHHHHHHhc
Q 041804 110 ALCEYKHVIEAQELCFG 126 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~ 126 (403)
..+..|+.+.+..+++.
T Consensus 8 ~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 8 GAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHTCHHHHHHHHHT
T ss_pred HHHHhCCHHHHHHHHHh
Confidence 34556777777766655
No 368
>3qz3_A Ferritin; structural genomics, the center for structural genomics of I diseases, csgid, cytoplasmic, oxidoreductase; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: a.25.1.1
Probab=28.40 E-value=1.8e+02 Score=21.53 Aligned_cols=19 Identities=5% Similarity=0.170 Sum_probs=12.8
Q ss_pred hhHHHHHHHHHHhCCCCCc
Q 041804 158 WGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~ 176 (403)
.+.|.++++.+..+|..|.
T Consensus 60 ~~HA~~l~~~i~~~Gg~~~ 78 (184)
T 3qz3_A 60 MQHMQRLFTYVSETGALPI 78 (184)
T ss_dssp HHHHHHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHCCCCcc
Confidence 4567777777777776554
No 369
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=28.34 E-value=1.9e+02 Score=21.76 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=13.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 220 RAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 220 ~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
...+..++.+.+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 333455666666566666666554
No 370
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=27.66 E-value=1.8e+02 Score=23.92 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=32.6
Q ss_pred HHHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCCC
Q 041804 198 KLYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGCQ 244 (403)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 244 (403)
+++..+.+.|+.|...++..++..+.+.=.++.+.++++.+...|..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~ 255 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTE 255 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcH
Confidence 34555566677777777777777777766677777777777766543
No 371
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=27.30 E-value=2.1e+02 Score=21.87 Aligned_cols=67 Identities=7% Similarity=-0.022 Sum_probs=45.0
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC-----hhHHHHHHHHHHHcCCCCC
Q 041804 145 YNMILRGWF---KMSWWGKCREFWEEMDKRGVVKDLHSYSIYMDIMCKSGK-----PWKAVKLYKEMKKKGIKMD 211 (403)
Q Consensus 145 ~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~~ 211 (403)
.-.+++++. +-.+.+.|+-++-+|++.|..|.-..-..++-+.-.-|. ...|...++.....|.+--
T Consensus 35 HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~ 109 (213)
T 3ctd_A 35 HFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEG 109 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 344555554 457899999999999999988777666666666655543 2345555666666665433
No 372
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=27.12 E-value=1e+02 Score=18.27 Aligned_cols=44 Identities=5% Similarity=0.120 Sum_probs=24.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHh
Q 041804 70 FRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCE 113 (403)
Q Consensus 70 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 113 (403)
++.++..++...-.+.++..+.+..+.|.-+..+|.--++..++
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGTIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 44555555555555556666666665554455555555555444
No 373
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=26.06 E-value=1.3e+02 Score=19.43 Aligned_cols=32 Identities=13% Similarity=0.144 Sum_probs=15.7
Q ss_pred HcCChhHHHHHHHHHHHcCCCCChhhHHHHHH
Q 041804 189 KSGKPWKAVKLYKEMKKKGIKMDVVAYNTVIR 220 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 220 (403)
..|++-+|.++++..-.....|....|..+|+
T Consensus 13 n~g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq 44 (94)
T 2cwy_A 13 RAGRYYEVHEVLEPYWLKATGEERRLLQGVIL 44 (94)
T ss_dssp HTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCChHHHHHHHHHHHhhCCCchHHHHHHHHH
Confidence 34666666666666555432233334444444
No 374
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=25.79 E-value=1.6e+02 Score=20.19 Aligned_cols=64 Identities=9% Similarity=0.013 Sum_probs=30.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhcccccccccccccCcchHHHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCC
Q 041804 104 YCNLVDALCEYKHVIEAQELCFGENKNVGFSGLVEMNKTKIYNMILRGWFKMSW--WGKCREFWEEMDKRGVV 174 (403)
Q Consensus 104 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 174 (403)
...++.-|...|+.++|...++++.. +.-....+...+..+.-+.++ .+.+..++..+...|+-
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~-------p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEV-------PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTC-------GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCC-------CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 34556666666666666666666542 111122223333333333321 34455666666655544
No 375
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=25.77 E-value=2.5e+02 Score=22.88 Aligned_cols=45 Identities=7% Similarity=0.020 Sum_probs=34.3
Q ss_pred HHHHHHHcCCCCChhhHHHHHHHHhhcCCHHHHHHHHHHHHHcCC
Q 041804 199 LYKEMKKKGIKMDVVAYNTVIRAVGVSEGVDFAMRVYREMREMGC 243 (403)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 243 (403)
++..+.+.|+.|...++..++..+++.=.++.+.++++.+...|.
T Consensus 176 L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~ 220 (310)
T 3hzj_A 176 LHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGL 220 (310)
T ss_dssp HHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 455566667888888888888888777778888888888887764
No 376
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=25.31 E-value=2.2e+02 Score=21.42 Aligned_cols=17 Identities=12% Similarity=-0.125 Sum_probs=10.5
Q ss_pred HHHhcCCHHHHHHHHhc
Q 041804 110 ALCEYKHVIEAQELCFG 126 (403)
Q Consensus 110 ~~~~~~~~~~a~~~~~~ 126 (403)
..+..|+.+....+++.
T Consensus 9 ~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 9 LAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHTTCHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHh
Confidence 34556777776666654
No 377
>2cih_A Ferritin heavy chain; apoferritin, ferroxidase, DI-iron non-heme protein, iron storage, iron, metal-binding, oxidoreductase, phosphorylation; 1.5A {Homo sapiens} PDB: 2chi_A 2cei_A 1fha_A 2fha_A 2cn7_A 2iu2_A 2clu_A 2cn6_A 3ajo_A 3ajq_A 3ajp_A 3erz_A 3es3_A 2z6m_A 1r03_A
Probab=25.29 E-value=1.2e+02 Score=22.51 Aligned_cols=19 Identities=11% Similarity=0.034 Sum_probs=12.7
Q ss_pred hhHHHHHHHHHHhCCCCCc
Q 041804 158 WGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~ 176 (403)
.+.|.++++.+..+|..|+
T Consensus 64 ~~HA~kl~~~i~~rgg~~~ 82 (183)
T 2cih_A 64 REHAEKLMKLQNQRGGRIF 82 (183)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHCCCccc
Confidence 4567777777777765554
No 378
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=24.80 E-value=1.4e+02 Score=19.15 Aligned_cols=25 Identities=16% Similarity=0.179 Sum_probs=14.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH
Q 041804 351 AYNALVDALIDKGMLDMARKYDEEM 375 (403)
Q Consensus 351 ~~~~l~~~~~~~g~~~~a~~~~~~m 375 (403)
.+..-.+.+.+.|++++|++..++.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kA 41 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKA 41 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHH
Confidence 3444556667777777776555443
No 379
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.57 E-value=3.5e+02 Score=23.55 Aligned_cols=153 Identities=11% Similarity=0.018 Sum_probs=0.0
Q ss_pred CHHHHHHHHhccccc-------ccccccccCcchHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC----CCcHHHHHHHH
Q 041804 116 HVIEAQELCFGENKN-------VGFSGLVEMNKTKIYNMILRGWFKMSWWGKCREFWEEMDKRGV----VKDLHSYSIYM 184 (403)
Q Consensus 116 ~~~~a~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~ 184 (403)
..++...++...... . +...+..+...++.. ..|+...+..+++.+..... .....+...+-
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~-----~~~i~~~al~~L~~~--~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~ 238 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQ-----DIVLPDETRRAIAEL--VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLT 238 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTS-----SEECCHHHHHHHHHH--HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhhccc-----cCcCCHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHH
Q ss_pred HHHHHc------------------------CChhHHHHHHHHHHHcCCCCChhhHHHHHHHHhhcCC-----HHHHHHHH
Q 041804 185 DIMCKS------------------------GKPWKAVKLYKEMKKKGIKMDVVAYNTVIRAVGVSEG-----VDFAMRVY 235 (403)
Q Consensus 185 ~~~~~~------------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~ 235 (403)
.+..+. ++.+.|+.++.+|.+.|..|....-..+..+.-..|. ...|...+
T Consensus 239 ~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~ 318 (447)
T 3pvs_A 239 EIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAW 318 (447)
T ss_dssp HHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHH
T ss_pred HHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHH
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHhchh
Q 041804 236 REMREMGCQPSVVTCNTVIKLLCENGRVREAYAVLAEMPK 275 (403)
Q Consensus 236 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 275 (403)
+.....|.+-........+-.++.+-....+...++....
T Consensus 319 ~~~~~~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 319 DCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 380
>3ka8_A Ferritin, middle subunit; iron storage, DIIRON, iron, metal-binding, oxidoreductase; 1.35A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 3ka9_A 3ka3_A 1mfr_A 3ka4_A 3rbc_A 3re7_A 3rgd_A 4das_A* 3ka6_A 3shx_A 3sh6_A 3se1_A 1bg7_A
Probab=24.11 E-value=1.7e+02 Score=21.53 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=11.3
Q ss_pred hhHHHHHHHHHHhCCCCC
Q 041804 158 WGKCREFWEEMDKRGVVK 175 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~ 175 (403)
.+.|.++++.+..+|..|
T Consensus 60 ~~HA~kl~~~i~~rgg~~ 77 (176)
T 3ka8_A 60 REHAEKFMKYQNKRGGRV 77 (176)
T ss_dssp HHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHcCCCe
Confidence 456677777776666444
No 381
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=23.73 E-value=1.8e+02 Score=20.06 Aligned_cols=15 Identities=20% Similarity=0.175 Sum_probs=6.9
Q ss_pred HccCChhHHHHHHHH
Q 041804 42 GKFFEFDLSWNLIHR 56 (403)
Q Consensus 42 ~~~~~~~~a~~~~~~ 56 (403)
+..|+.+.+..+++.
T Consensus 10 ~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 10 AARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHTCHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHh
Confidence 344455444444444
No 382
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=23.45 E-value=3.2e+02 Score=22.67 Aligned_cols=127 Identities=13% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCcHHHHHHHHHhchhcCCCCChhhHHHHHHhhCC----HHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 041804 250 CNTVIKLLCENGRVREAYAVLAEMPKKGCVPDVITYHCFFRCLEK----PREILGLFDRMIESGIRPKMDTYVMLLRKFG 325 (403)
Q Consensus 250 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~ 325 (403)
...++.-|...|+.++|...++++......| ......+..++.+ .+.+..++..+.+.++-+.......+-+.+.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~-~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~ 92 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLF-IFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILE 92 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHh
Q ss_pred hcC----CcchHHHHHHHHHhc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 041804 326 RWG----FLRPVFVVWKKMEEL----GCSPDEFAYNALVDALIDKGMLDMARKYDEEMFA 377 (403)
Q Consensus 326 ~~g----~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 377 (403)
... |...|...+.++... |+-|-...+..+...+...|........+-+...
T Consensus 93 ~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~~~l~~~g~~~~fl~~vl~~l~ 152 (339)
T 1ug3_A 93 LAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREITKPLRPLGKAASLLLEILGLLC 152 (339)
T ss_dssp HHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHTTTHHHHTCHHHHHHHHHHHHH
T ss_pred hChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhccchHHHHHHHHHHHHH
No 383
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=23.10 E-value=3e+02 Score=22.30 Aligned_cols=21 Identities=14% Similarity=0.053 Sum_probs=11.6
Q ss_pred HHHHHHHccCChhHHHHHHHH
Q 041804 36 SVIDILGKFFEFDLSWNLIHR 56 (403)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~ 56 (403)
+.+...++.|+++-+..+++.
T Consensus 27 t~L~~Av~~g~~~~V~~LL~~ 47 (337)
T 4g8k_A 27 HLLIKAVQNEDVDLVQQLLEG 47 (337)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHC
Confidence 344444566776665555543
No 384
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=22.55 E-value=2.5e+02 Score=21.05 Aligned_cols=16 Identities=19% Similarity=-0.051 Sum_probs=7.9
Q ss_pred HHHHcCChhHHHHHHH
Q 041804 186 IMCKSGKPWKAVKLYK 201 (403)
Q Consensus 186 ~~~~~~~~~~a~~~~~ 201 (403)
..+..|+.+.+..++.
T Consensus 12 ~A~~~g~~~~v~~ll~ 27 (231)
T 3aji_A 12 NLAYSGKLDELKERIL 27 (231)
T ss_dssp HHHHHTCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHH
Confidence 3444555555554444
No 385
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=22.27 E-value=44 Score=24.01 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=32.9
Q ss_pred CcchHHHHHHHHHhcCCC-CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCC
Q 041804 329 FLRPVFVVWKKMEELGCS-PDEFAYNALVDALI---DKGMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p 382 (403)
++++|.+.+..|++.-+. -.+..||.++..+- ..++. ..+|+.++.+++.|
T Consensus 73 ~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~LK~~l~~~~l---~~FW~~Iv~~~lgL 127 (152)
T 1rw2_A 73 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 127 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHSCC---HHHHHHHHHHTCSS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCccc
Confidence 578888888888764222 35678888877654 23333 55666777776654
No 386
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=22.09 E-value=1.7e+02 Score=25.59 Aligned_cols=64 Identities=9% Similarity=0.189 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCcH--------HHHHH-HHHHHHHcCChhHHHHHHHHHHHc
Q 041804 143 KIYNMILRGWFKMSWWGKCREFWEEMDKRGVVKDL--------HSYSI-YMDIMCKSGKPWKAVKLYKEMKKK 206 (403)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~ 206 (403)
...|.+...|.+.++.+.|..+++.+...+..|+. .+|.- +...++..+++.+|.+.+....+.
T Consensus 177 ~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 177 YLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 34677888999999999999999888777653322 23332 334556788888888887776554
No 387
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=22.01 E-value=83 Score=23.99 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=6.1
Q ss_pred HHHccCChhHHHHH
Q 041804 40 ILGKFFEFDLSWNL 53 (403)
Q Consensus 40 ~~~~~~~~~~a~~~ 53 (403)
..+..|+.+-+..+
T Consensus 17 ~A~~~g~~~~v~~L 30 (237)
T 3b7b_A 17 AAAEAGHVDICHML 30 (237)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCcHHHHHHH
Confidence 33445555443333
No 388
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=21.83 E-value=1.4e+02 Score=24.96 Aligned_cols=57 Identities=2% Similarity=-0.051 Sum_probs=36.1
Q ss_pred HHHHHHHHccCChhHHHHHHHHhhhCCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHh
Q 041804 35 NSVIDILGKFFEFDLSWNLIHRMKDNPSSIPNH---ATFRIMFKRYVTAHLVNEAMGTFNKLD 94 (403)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 94 (403)
..++....+.+..++...+|+++...- ... ..-|.++.-+...+..+.-..+++.+.
T Consensus 38 sR~lQ~~l~~~~~~~~~~i~~ei~~~~---~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~ 97 (351)
T 3gvo_A 38 SRFIQQKLERATPAERQIVFNEILQAA---YQLMTDVFGNYVIQKFFEFGSLDQKLALATRIR 97 (351)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHGGGH---HHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred hHHHHHHHhhCCHHHHHHHHHHHHHhH---HHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHH
Confidence 455666667788888888888876421 110 013456666777777777777777664
No 389
>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}
Probab=21.56 E-value=57 Score=22.28 Aligned_cols=17 Identities=18% Similarity=0.011 Sum_probs=6.7
Q ss_pred HcCChhHHHHHHHHHHH
Q 041804 189 KSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 189 ~~~~~~~a~~~~~~~~~ 205 (403)
.+++.+-|.++++-..+
T Consensus 44 ~S~d~elaEeLL~yFVe 60 (125)
T 3qil_A 44 ESKDTELAEELLQWFLQ 60 (125)
T ss_dssp SSCCSHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 33344444444443333
No 390
>3f3f_C Nucleoporin NUP85; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_C 3f3p_C 3ewe_B
Probab=21.29 E-value=4.3e+02 Score=23.92 Aligned_cols=54 Identities=11% Similarity=0.024 Sum_probs=24.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCcHHHHHHHHHHHHhcCCHHHH
Q 041804 66 NHATFRIMFKRYVTAHLVNEAMGTFNKLDEFGLKDEVSYCNLVDALCEYKHVIEA 120 (403)
Q Consensus 66 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 120 (403)
+..-...++..|.+.|-.+.|.++++.+-..-..+...+ ..+..|++.|+++..
T Consensus 515 Tndd~e~vL~iCa~l~L~~~ar~I~k~~g~k~l~~g~~g-eAL~~f~rA~~~~~V 568 (570)
T 3f3f_C 515 TNDDIEWMLSICVEWRLPEIAKEIYTTLGNQMLSAHNII-ESIANFSRAGKYELV 568 (570)
T ss_dssp SHHHHHHHHHHHHHHTCHHHHHHHHHHHHC-------------------------
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHCccHH-HHHHHHHHcCChhhc
Confidence 445567788899999999999999988877666655666 556667777777654
No 391
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=20.54 E-value=2.1e+02 Score=19.44 Aligned_cols=42 Identities=5% Similarity=-0.135 Sum_probs=23.4
Q ss_pred HHHHHHhCCCCCcHHHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 041804 164 FWEEMDKRGVVKDLHSYSIYMDIMCKSGKPWKAVKLYKEMKK 205 (403)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 205 (403)
+|+.+.+..+.|++..-..-+..+...++++.|.++...+..
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555544444444455566677777777666654
No 392
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=20.46 E-value=33 Score=23.47 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=29.9
Q ss_pred CcchHHHHHHHHHhcCCC-CCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHHcCCCC
Q 041804 329 FLRPVFVVWKKMEELGCS-PDEFAYNALVDALI---DKGMLDMARKYDEEMFAKGLSA 382 (403)
Q Consensus 329 ~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~---~~g~~~~a~~~~~~m~~~~~~p 382 (403)
++++|.+.+..|++.-+. -.+..||.++..+- ..++. ..+|..++.+++.|
T Consensus 42 ~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~~~~~l---~~FW~~iv~~~lgL 96 (120)
T 1q2z_A 42 YFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKVEIKQL---NHFWEIVVQDGITL 96 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTST---THHHHHHHHTTCCS
T ss_pred hHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHhhhH---HHHHHHHHHCCcCC
Confidence 566777777777654222 35677777776553 23333 45566666666544
No 393
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=20.36 E-value=2.4e+02 Score=22.93 Aligned_cols=18 Identities=11% Similarity=-0.010 Sum_probs=9.4
Q ss_pred HHHHHccCChhHHHHHHH
Q 041804 38 IDILGKFFEFDLSWNLIH 55 (403)
Q Consensus 38 i~~~~~~~~~~~a~~~~~ 55 (403)
+...+..|+.+-+.-+++
T Consensus 63 Lh~A~~~g~~~iv~~Ll~ 80 (337)
T 4g8k_A 63 LHNAVQMSREDIVELLLR 80 (337)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 344456677655544443
No 394
>1rcd_A L ferritin; iron storage; 2.00A {Rana catesbeiana} SCOP: a.25.1.1 PDB: 1rcg_A 1rci_A 1rcc_A 1rce_A
Probab=20.03 E-value=79 Score=23.20 Aligned_cols=19 Identities=16% Similarity=0.038 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHhCCCCCc
Q 041804 158 WGKCREFWEEMDKRGVVKD 176 (403)
Q Consensus 158 ~~~a~~~~~~~~~~~~~~~ 176 (403)
.+.|.++++.+..+|..|+
T Consensus 60 ~~HA~~l~~~i~~rgg~~~ 78 (173)
T 1rcd_A 60 KEHAEKLIEYQNQRGGRVF 78 (173)
T ss_dssp HHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHcCCeee
Confidence 4566777777777665554
Done!