Query 041805
Match_columns 215
No_of_seqs 199 out of 1623
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 18:37:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041805.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041805hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1E-28 3.4E-33 222.3 7.9 155 1-159 290-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.9 1.2E-24 4.1E-29 209.7 10.3 152 3-158 285-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 99.9 8.9E-22 3E-26 177.8 10.3 149 2-154 284-448 (591)
4 1vt4_I APAF-1 related killer D 99.8 5.7E-21 2E-25 179.6 7.5 133 3-151 297-436 (1221)
5 2qen_A Walker-type ATPase; unk 98.0 7.3E-05 2.5E-09 62.0 11.3 139 1-151 200-348 (350)
6 2fna_A Conserved hypothetical 97.8 0.0001 3.6E-09 61.1 10.2 138 1-150 206-355 (357)
7 1w5s_A Origin recognition comp 96.8 0.002 7E-08 54.5 6.7 137 1-146 212-386 (412)
8 2qby_B CDC6 homolog 3, cell di 94.3 0.88 3E-05 37.7 12.8 126 1-136 194-339 (384)
9 2qby_A CDC6 homolog 1, cell di 91.3 2.3 7.9E-05 34.8 11.1 126 1-136 194-348 (386)
10 2r9u_A Variable lymphocyte rec 88.2 0.41 1.4E-05 35.5 3.6 31 183-213 71-104 (174)
11 1fnn_A CDC6P, cell division co 88.0 1.6 5.5E-05 36.0 7.6 148 1-158 190-387 (389)
12 4fcg_A Uncharacterized protein 87.1 0.26 8.9E-06 40.5 2.1 32 183-214 118-150 (328)
13 4b8c_D Glucose-repressible alc 87.0 0.26 8.9E-06 45.3 2.3 32 183-214 284-316 (727)
14 3g39_A Variable lymphocyte rec 86.8 0.52 1.8E-05 34.7 3.5 31 183-213 68-101 (170)
15 2v1u_A Cell division control p 86.7 12 0.0004 30.5 14.8 126 1-136 198-351 (387)
16 4b8c_D Glucose-repressible alc 86.6 0.37 1.3E-05 44.3 3.0 33 183-215 261-294 (727)
17 4fcg_A Uncharacterized protein 86.3 0.31 1.1E-05 40.0 2.1 33 183-215 95-128 (328)
18 2r9u_A Variable lymphocyte rec 85.4 0.75 2.6E-05 34.0 3.8 21 189-209 55-75 (174)
19 3e6j_A Variable lymphocyte rec 83.7 0.85 2.9E-05 35.2 3.5 25 183-207 126-151 (229)
20 3g39_A Variable lymphocyte rec 83.2 0.98 3.3E-05 33.1 3.5 21 189-209 52-72 (170)
21 1dce_A Protein (RAB geranylger 83.0 0.55 1.9E-05 41.8 2.4 22 190-211 462-483 (567)
22 2v9t_B SLIT homolog 2 protein 82.2 1.1 3.7E-05 34.3 3.6 24 183-206 94-119 (220)
23 2je0_A Acidic leucine-rich nuc 81.9 1.3 4.3E-05 31.4 3.6 20 189-208 62-82 (149)
24 2wfh_A SLIT homolog 2 protein 81.1 0.9 3.1E-05 34.1 2.7 26 183-208 68-95 (193)
25 1njg_A DNA polymerase III subu 80.6 2.1 7.3E-05 32.2 4.7 48 1-50 182-229 (250)
26 3rfe_A Platelet glycoprotein I 79.7 1.4 4.6E-05 31.2 3.1 27 183-210 24-50 (130)
27 4g8a_A TOLL-like receptor 4; l 79.5 1.2 4.1E-05 39.1 3.3 27 183-209 90-118 (635)
28 1w8a_A SLIT protein; signaling 78.1 1.8 6.1E-05 32.3 3.5 18 189-206 100-117 (192)
29 2v70_A SLIT-2, SLIT homolog 2 78.1 1.8 6.1E-05 33.1 3.6 30 185-214 122-153 (220)
30 3e6j_A Variable lymphocyte rec 78.0 1.5 5.1E-05 33.7 3.1 32 183-214 102-135 (229)
31 2wfh_A SLIT homolog 2 protein 76.8 2.2 7.4E-05 32.0 3.6 27 183-209 92-120 (193)
32 1dce_A Protein (RAB geranylger 76.5 1.3 4.6E-05 39.3 2.7 31 183-214 477-508 (567)
33 2ell_A Acidic leucine-rich nuc 76.4 1.1 3.8E-05 32.4 1.9 21 189-209 69-90 (168)
34 2ell_A Acidic leucine-rich nuc 76.2 0.72 2.5E-05 33.5 0.7 20 189-208 118-137 (168)
35 1w8a_A SLIT protein; signaling 75.9 2 6.7E-05 32.1 3.1 25 185-209 71-96 (192)
36 4g8a_A TOLL-like receptor 4; l 75.3 1.8 6.2E-05 37.9 3.2 27 183-209 114-142 (635)
37 3o53_A Protein LRIM1, AGAP0063 75.2 1.1 3.7E-05 36.3 1.6 31 183-213 205-236 (317)
38 1ogq_A PGIP-2, polygalacturona 73.7 1.4 4.6E-05 35.7 1.8 31 183-213 140-172 (313)
39 2v9t_B SLIT homolog 2 protein 73.0 2.6 9E-05 32.1 3.3 26 185-210 73-99 (220)
40 1ogq_A PGIP-2, polygalacturona 72.6 1.1 3.7E-05 36.3 1.0 32 183-214 116-149 (313)
41 1p9a_G Platelet glycoprotein I 72.6 3.2 0.00011 33.1 3.8 27 183-209 114-142 (290)
42 4eco_A Uncharacterized protein 72.1 1.4 4.7E-05 39.6 1.6 33 183-215 197-250 (636)
43 2o6r_A Variable lymphocyte rec 71.9 3.7 0.00013 29.8 3.8 27 183-209 90-118 (177)
44 3vq2_A TLR4, TOLL-like recepto 71.3 2.8 9.6E-05 36.8 3.5 23 185-207 97-120 (606)
45 2ifg_A High affinity nerve gro 71.1 2.2 7.4E-05 34.8 2.5 25 186-210 74-99 (347)
46 4ay9_X Follicle-stimulating ho 71.0 2.1 7.2E-05 35.1 2.5 27 183-209 192-220 (350)
47 1wwl_A Monocyte differentiatio 71.0 2.3 8E-05 34.2 2.7 25 183-208 267-291 (312)
48 1a9n_A U2A', U2A'; complex (nu 70.8 2.5 8.5E-05 30.8 2.6 20 189-208 86-105 (176)
49 2ifg_A High affinity nerve gro 70.6 2.2 7.6E-05 34.7 2.5 27 183-209 46-74 (347)
50 3a79_B TLR6, VLRB.59, TOLL-lik 69.8 3.5 0.00012 36.0 3.8 31 183-213 464-496 (562)
51 2o6r_A Variable lymphocyte rec 69.8 3.9 0.00013 29.7 3.5 27 183-209 66-94 (177)
52 2v70_A SLIT-2, SLIT homolog 2 69.5 3.6 0.00012 31.3 3.4 24 189-212 103-127 (220)
53 3rgz_A Protein brassinosteroid 69.4 2.3 7.8E-05 39.0 2.5 31 183-213 671-703 (768)
54 2ft3_A Biglycan; proteoglycan, 69.3 2.8 9.5E-05 33.9 2.8 25 189-213 239-263 (332)
55 1xku_A Decorin; proteoglycan, 69.1 2.9 9.9E-05 33.7 2.9 23 190-212 239-261 (330)
56 2o6q_A Variable lymphocyte rec 69.0 3.8 0.00013 32.1 3.5 26 183-208 75-102 (270)
57 1p9a_G Platelet glycoprotein I 68.9 2.7 9.4E-05 33.6 2.6 26 183-208 91-117 (290)
58 3g06_A SSPH2 (leucine-rich rep 68.7 3.4 0.00012 37.2 3.5 30 183-214 255-284 (622)
59 2z80_A TOLL-like receptor 2, v 67.6 1.3 4.3E-05 36.4 0.4 31 184-214 269-301 (353)
60 1a9n_A U2A', U2A'; complex (nu 67.6 3.3 0.00011 30.2 2.7 21 189-209 111-131 (176)
61 3o6n_A APL1; leucine-rich repe 67.5 4.1 0.00014 33.7 3.5 17 190-206 140-156 (390)
62 2z66_A Variable lymphocyte rec 67.3 3.7 0.00013 32.7 3.1 19 189-207 197-215 (306)
63 3o53_A Protein LRIM1, AGAP0063 67.0 2.6 9E-05 33.9 2.2 32 183-214 183-214 (317)
64 1hqc_A RUVB; extended AAA-ATPa 66.4 47 0.0016 26.3 11.7 125 1-142 165-304 (324)
65 3t6q_A CD180 antigen; protein- 66.4 4.2 0.00014 35.7 3.5 25 189-213 276-300 (606)
66 4eco_A Uncharacterized protein 66.2 3.2 0.00011 37.1 2.8 23 190-212 512-534 (636)
67 2o6s_A Variable lymphocyte rec 65.9 5.1 0.00017 29.9 3.5 27 183-209 90-118 (208)
68 1ds9_A Outer arm dynein; leuci 65.8 0.46 1.6E-05 35.7 -2.5 27 183-210 62-89 (198)
69 2z7x_B TOLL-like receptor 1, v 65.7 3.3 0.00011 35.7 2.7 27 183-209 435-462 (520)
70 3m19_A Variable lymphocyte rec 65.7 5 0.00017 31.0 3.5 26 183-208 121-148 (251)
71 1xku_A Decorin; proteoglycan, 65.7 4.8 0.00016 32.4 3.5 26 185-210 93-119 (330)
72 2je0_A Acidic leucine-rich nuc 65.2 3.1 0.00011 29.2 2.1 20 189-208 111-130 (149)
73 2z80_A TOLL-like receptor 2, v 65.0 3.4 0.00012 33.7 2.5 20 189-208 122-141 (353)
74 2z7x_B TOLL-like receptor 1, v 65.0 2.7 9.2E-05 36.2 2.0 31 183-214 83-115 (520)
75 3rgz_A Protein brassinosteroid 64.8 3.2 0.00011 38.0 2.5 32 183-214 647-680 (768)
76 3v47_A TOLL-like receptor 5B a 64.5 4.6 0.00016 34.0 3.3 20 185-204 96-116 (455)
77 2o6s_A Variable lymphocyte rec 64.3 5.7 0.0002 29.6 3.5 27 183-209 114-142 (208)
78 3a79_B TLR6, VLRB.59, TOLL-lik 64.2 3.9 0.00013 35.7 2.9 30 183-213 114-145 (562)
79 4ecn_A Leucine-rich repeat pro 64.1 2.5 8.5E-05 39.8 1.6 33 183-215 439-492 (876)
80 3j0a_A TOLL-like receptor 5; m 63.8 4.4 0.00015 37.5 3.3 20 185-204 90-110 (844)
81 2ft3_A Biglycan; proteoglycan, 63.3 5 0.00017 32.4 3.2 26 185-210 95-121 (332)
82 2o6q_A Variable lymphocyte rec 62.6 6.1 0.00021 30.9 3.5 26 183-208 147-174 (270)
83 3oja_A Leucine-rich immune mol 62.5 3 0.0001 36.1 1.8 31 183-213 205-236 (487)
84 3vq2_A TLR4, TOLL-like recepto 62.2 5.9 0.0002 34.8 3.7 32 183-214 118-153 (606)
85 3pfi_A Holliday junction ATP-d 62.1 56 0.0019 26.1 9.5 135 1-150 181-327 (338)
86 2xot_A Amphoterin-induced prot 61.9 5.5 0.00019 32.7 3.2 18 190-207 162-179 (361)
87 4ezg_A Putative uncharacterize 61.8 3.7 0.00012 30.5 2.0 30 183-213 151-180 (197)
88 4ecn_A Leucine-rich repeat pro 60.9 4.7 0.00016 37.9 2.9 23 190-212 752-774 (876)
89 2xot_A Amphoterin-induced prot 60.9 6.1 0.00021 32.4 3.4 18 189-206 110-127 (361)
90 4ezg_A Putative uncharacterize 60.7 4.2 0.00014 30.2 2.1 18 190-207 135-153 (197)
91 3m19_A Variable lymphocyte rec 60.4 7.9 0.00027 29.8 3.8 26 183-208 145-172 (251)
92 3zyi_A Leucine-rich repeat-con 60.3 6.8 0.00023 33.2 3.6 26 183-208 137-164 (452)
93 3oja_B Anopheles plasmodium-re 59.8 6.5 0.00022 34.8 3.5 19 189-207 145-163 (597)
94 3v47_A TOLL-like receptor 5B a 59.5 7.2 0.00025 32.7 3.6 25 185-209 364-389 (455)
95 3t6q_A CD180 antigen; protein- 59.1 6.2 0.00021 34.6 3.2 29 185-213 74-104 (606)
96 3g06_A SSPH2 (leucine-rich rep 59.0 6.3 0.00022 35.4 3.3 30 183-214 75-104 (622)
97 2id5_A Lingo-1, leucine rich r 58.9 7.4 0.00025 33.0 3.6 18 189-206 102-119 (477)
98 2id5_A Lingo-1, leucine rich r 58.8 6.7 0.00023 33.3 3.3 25 185-209 73-98 (477)
99 3cvr_A Invasion plasmid antige 58.2 6.8 0.00023 34.9 3.3 21 194-214 210-230 (571)
100 2z63_A TOLL-like receptor 4, v 57.9 6 0.00021 34.3 2.9 17 190-206 469-485 (570)
101 4glp_A Monocyte differentiatio 57.5 7.3 0.00025 31.1 3.2 23 183-206 265-287 (310)
102 1ozn_A Reticulon 4 receptor; N 56.8 8.2 0.00028 30.2 3.4 29 185-213 73-104 (285)
103 3oja_A Leucine-rich immune mol 56.7 5 0.00017 34.6 2.2 32 183-214 183-214 (487)
104 3rfs_A Internalin B, repeat mo 56.3 9.1 0.00031 29.9 3.5 21 189-209 155-175 (272)
105 1ozn_A Reticulon 4 receptor; N 55.8 9.7 0.00033 29.8 3.6 27 183-209 143-171 (285)
106 3zyj_A Leucine-rich repeat-con 55.8 8.8 0.0003 32.3 3.6 24 183-206 199-222 (440)
107 1in4_A RUVB, holliday junction 55.7 79 0.0027 25.4 9.9 135 1-150 177-324 (334)
108 2z62_A TOLL-like receptor 4, v 55.7 9.1 0.00031 29.8 3.4 24 184-207 141-165 (276)
109 2z81_A CD282 antigen, TOLL-lik 55.1 6.1 0.00021 34.1 2.5 17 189-205 96-112 (549)
110 1jl5_A Outer protein YOPM; leu 54.6 10 0.00034 32.4 3.7 31 183-213 145-175 (454)
111 1xeu_A Internalin C; cellular 54.6 7.3 0.00025 30.5 2.7 26 183-208 77-102 (263)
112 2z62_A TOLL-like receptor 4, v 54.5 11 0.00036 29.4 3.6 24 187-210 196-219 (276)
113 1xeu_A Internalin C; cellular 54.0 7.8 0.00027 30.3 2.8 18 189-206 148-165 (263)
114 3rfs_A Internalin B, repeat mo 53.1 11 0.00037 29.4 3.5 27 183-209 123-151 (272)
115 3o6n_A APL1; leucine-rich repe 52.6 6.8 0.00023 32.3 2.3 21 190-210 294-314 (390)
116 4ay9_X Follicle-stimulating ho 52.6 6.9 0.00024 31.9 2.3 27 183-209 44-73 (350)
117 1h6u_A Internalin H; cell adhe 52.5 8.2 0.00028 30.9 2.7 25 183-207 77-101 (308)
118 2xwt_C Thyrotropin receptor; s 52.2 8.7 0.0003 29.2 2.7 27 183-209 194-223 (239)
119 3rw6_A Nuclear RNA export fact 51.5 4.6 0.00016 32.3 1.0 23 184-206 188-211 (267)
120 2z81_A CD282 antigen, TOLL-lik 51.2 9.2 0.00031 33.0 3.0 26 183-208 465-490 (549)
121 2z63_A TOLL-like receptor 4, v 51.1 11 0.00038 32.5 3.5 32 183-214 114-149 (570)
122 2xwt_C Thyrotropin receptor; s 51.0 5.5 0.00019 30.4 1.4 14 195-208 134-148 (239)
123 1o6v_A Internalin A; bacterial 50.3 9 0.00031 32.5 2.7 26 183-208 82-107 (466)
124 4glp_A Monocyte differentiatio 50.1 9.4 0.00032 30.4 2.7 26 185-210 241-270 (310)
125 1wwl_A Monocyte differentiatio 50.0 12 0.0004 29.9 3.3 23 189-211 251-273 (312)
126 1sxj_B Activator 1 37 kDa subu 50.0 29 0.00099 27.3 5.7 47 1-49 163-210 (323)
127 3zyi_A Leucine-rich repeat-con 49.1 13 0.00043 31.5 3.5 24 183-206 210-233 (452)
128 2z66_A Variable lymphocyte rec 48.8 12 0.00041 29.5 3.1 30 184-213 167-198 (306)
129 1ziw_A TOLL-like receptor 3; i 48.4 14 0.00047 32.9 3.7 19 189-207 119-137 (680)
130 4fmz_A Internalin; leucine ric 48.3 10 0.00036 30.4 2.7 25 183-207 80-104 (347)
131 3zyj_A Leucine-rich repeat-con 48.0 12 0.0004 31.5 3.1 20 189-208 110-129 (440)
132 1jl5_A Outer protein YOPM; leu 47.5 15 0.00052 31.3 3.7 31 183-213 229-259 (454)
133 1h6t_A Internalin B; cell adhe 46.7 12 0.0004 29.8 2.7 26 183-208 82-107 (291)
134 3oja_B Anopheles plasmodium-re 45.3 9.1 0.00031 33.8 2.0 21 190-210 300-320 (597)
135 1ziw_A TOLL-like receptor 3; i 44.9 17 0.00058 32.3 3.8 18 190-207 503-520 (680)
136 3cvr_A Invasion plasmid antige 43.7 16 0.00055 32.4 3.4 19 190-208 139-157 (571)
137 1h6t_A Internalin B; cell adhe 42.3 14 0.00047 29.3 2.5 18 189-206 132-149 (291)
138 1h6u_A Internalin H; cell adhe 42.0 15 0.00051 29.3 2.7 19 189-207 127-145 (308)
139 4fmz_A Internalin; leucine ric 41.3 15 0.00052 29.4 2.7 26 183-208 102-127 (347)
140 2chg_A Replication factor C sm 40.4 33 0.0011 24.9 4.3 45 1-47 158-202 (226)
141 3j0a_A TOLL-like receptor 5; m 38.3 19 0.00064 33.3 3.0 26 189-214 121-148 (844)
142 2vda_B Maltoporin; sugar trans 37.9 15 0.00051 18.0 1.2 16 39-54 9-24 (28)
143 3e4g_A ATP synthase subunit S, 37.2 21 0.00071 26.6 2.6 23 183-205 52-75 (176)
144 3bz5_A Internalin-J, INLJ; leu 36.0 20 0.00069 30.5 2.7 19 189-207 83-101 (457)
145 2ast_B S-phase kinase-associat 34.0 13 0.00045 29.6 1.1 15 190-204 117-131 (336)
146 3rw6_A Nuclear RNA export fact 33.4 16 0.00056 29.0 1.6 18 190-207 169-186 (267)
147 1m9s_A Internalin B; cell inva 33.3 23 0.00078 31.6 2.7 30 183-213 79-108 (605)
148 1o6v_A Internalin A; bacterial 32.0 26 0.00088 29.6 2.7 30 183-213 104-133 (466)
149 1m9s_A Internalin B; cell inva 30.2 37 0.0013 30.2 3.5 18 189-206 129-146 (605)
150 3zq7_A KDP operon transcriptio 29.6 52 0.0018 21.4 3.4 36 86-121 29-66 (102)
151 1utg_A Uteroglobin; steroid bi 29.5 74 0.0025 19.7 3.9 53 39-92 1-54 (70)
152 3rjp_A COVR; winged helix-turn 28.4 58 0.002 20.8 3.5 31 86-116 23-55 (96)
153 1iqp_A RFCS; clamp loader, ext 27.7 1.7E+02 0.0059 22.7 6.9 45 1-47 166-210 (327)
154 3k69_A Putative transcription 27.0 1.1E+02 0.0038 22.0 5.1 47 91-137 15-62 (162)
155 2z9m_A Response regulator YYCF 26.8 83 0.0028 21.2 4.2 34 86-119 37-72 (120)
156 3bz5_A Internalin-J, INLJ; leu 26.7 30 0.001 29.4 2.2 25 183-207 56-80 (457)
157 2v79_A DNA replication protein 25.8 44 0.0015 23.6 2.6 86 73-158 15-114 (135)
158 2vn2_A DNAD, chromosome replic 24.7 1.7E+02 0.0058 19.9 5.6 83 73-158 15-114 (128)
159 2jzy_A Transcriptional regulat 24.4 79 0.0027 21.0 3.7 31 86-116 29-61 (112)
160 2ca6_A RAN GTPase-activating p 24.4 23 0.00079 29.0 1.0 17 189-205 242-258 (386)
161 2ca6_A RAN GTPase-activating p 24.3 21 0.00072 29.2 0.8 16 189-204 120-135 (386)
162 1gxq_A PHOB, phosphate regulon 21.8 82 0.0028 20.6 3.3 31 86-116 32-64 (106)
163 2hwv_A DNA-binding response re 21.5 1E+02 0.0035 20.8 3.8 31 86-116 44-76 (121)
164 2pmu_A Response regulator PHOP 21.3 91 0.0031 20.6 3.5 31 86-116 35-67 (110)
165 2zhj_A Annexin A4; zynogen gra 20.9 2.2E+02 0.0076 22.9 6.3 71 28-101 20-90 (322)
166 3q9v_A DNA-binding response re 20.7 98 0.0034 21.4 3.6 33 85-117 60-94 (133)
167 2zxj_A Transcriptional regulat 20.7 1.5E+02 0.005 20.2 4.5 35 85-119 36-72 (120)
168 3d0s_A Transcriptional regulat 20.2 2.5E+02 0.0086 20.4 6.2 42 104-146 178-219 (227)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.95 E-value=1e-28 Score=222.26 Aligned_cols=155 Identities=11% Similarity=0.078 Sum_probs=127.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHH-HhcCCchhHHHHH
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINK-LQRILHPSILEVL 79 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~-l~~~~~~~i~~~l 79 (215)
|++|+++|||+||.++||+... .+++.+++++|+++|+|+||||+++|+.|+.++ +.|...+.. ++.....++..+|
T Consensus 290 l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l 367 (549)
T 2a5y_B 290 VTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECIT 367 (549)
T ss_dssp CCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCS
T ss_pred CCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHH
Confidence 6799999999999999987643 468889999999999999999999999998875 444444433 4443556789999
Q ss_pred HHhhcCccHHHHHHHH-----------HHhhccCCCCHHHHHHHHHHc--CCch-----------hhhHHHHHhccCcee
Q 041805 80 KISYDGLDNKEKNIFL-----------DVACFFQGEDVNLVMKFLNAS--GFYP-----------KLGRSVLVDKSLIVK 135 (215)
Q Consensus 80 ~~Sy~~L~~~~k~~fl-----------~~a~fp~~~~~~~l~~~w~~~--g~~~-----------~~~l~~L~~~~Ll~~ 135 (215)
.+||+.||++.|.||+ |||+||++++.. +.+|+++ |++. ..+|++|+++||++.
T Consensus 368 ~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~ 445 (549)
T 2a5y_B 368 PYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLS 445 (549)
T ss_dssp SSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSE
T ss_pred hcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeE
Confidence 9999999999999999 999999998555 8899999 7764 237999999999998
Q ss_pred ccC---CeEEecHHHHHHHHHHHhhcc
Q 041805 136 SNN---NKITMHDLLQELGRDIVSKES 159 (215)
Q Consensus 136 ~~~---~~~~mHdlvr~~a~~i~~~e~ 159 (215)
... ++|+|||+||+||+.++.+++
T Consensus 446 ~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 446 GKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp EECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 653 469999999999998887664
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.91 E-value=1.2e-24 Score=209.68 Aligned_cols=152 Identities=18% Similarity=0.225 Sum_probs=132.8
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCC-----------
Q 041805 3 ALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRIL----------- 71 (215)
Q Consensus 3 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~----------- 71 (215)
+|+++||++||...++.. .+++.+++++|+++|+|+||||+++|++|+.++ ..|+..++++....
T Consensus 285 ~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~ 360 (1249)
T 3sfz_A 285 GLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYD 360 (1249)
T ss_dssp SCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTT
T ss_pred CCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccc
Confidence 499999999999998433 234556789999999999999999999998866 47999998876532
Q ss_pred chhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCchhhhHHHHHhccCceeccCCe---EEecHH
Q 041805 72 HPSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNK---ITMHDL 146 (215)
Q Consensus 72 ~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~~~~---~~mHdl 146 (215)
...+..+|.+||+.||+++|+||+|||+||+++ +.+.++.+|.+++...+.++++|+++||++...+++ |+||++
T Consensus 361 ~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l 440 (1249)
T 3sfz_A 361 YEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDL 440 (1249)
T ss_dssp HHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHH
Confidence 146999999999999999999999999999986 889999999988878889999999999999887665 999999
Q ss_pred HHHHHHHHHhhc
Q 041805 147 LQELGRDIVSKE 158 (215)
Q Consensus 147 vr~~a~~i~~~e 158 (215)
||+||++.+.++
T Consensus 441 ~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 441 QVDFLTEKNRSQ 452 (1249)
T ss_dssp HHHHHHHHTGGG
T ss_pred HHHHHHhhhhHH
Confidence 999999987665
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.86 E-value=8.9e-22 Score=177.81 Aligned_cols=149 Identities=19% Similarity=0.254 Sum_probs=126.0
Q ss_pred CCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCC----------
Q 041805 2 EALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRIL---------- 71 (215)
Q Consensus 2 ~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~---------- 71 (215)
++|+++||++||...++.. .....+.+.+|+++|+|+||||+.+|+.++.+. ..|+..++.+....
T Consensus 284 ~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~ 359 (591)
T 1z6t_A 284 SSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSY 359 (591)
T ss_dssp SSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSS
T ss_pred CCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhcccc
Confidence 5899999999999998542 223346788999999999999999999998764 36888888876532
Q ss_pred -chhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCchhhhHHHHHhccCceeccCC---eEEecH
Q 041805 72 -HPSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNN---KITMHD 145 (215)
Q Consensus 72 -~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~~~---~~~mHd 145 (215)
...+..++..||+.||++.|.||++||+||+|+ +.+.++.+|.+++.....++++|+++||+....++ +|+||+
T Consensus 360 ~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~ 439 (591)
T 1z6t_A 360 DYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHD 439 (591)
T ss_dssp CCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCH
T ss_pred chHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcH
Confidence 257999999999999999999999999999875 77889999987655667899999999999976533 599999
Q ss_pred HHHHHHHHH
Q 041805 146 LLQELGRDI 154 (215)
Q Consensus 146 lvr~~a~~i 154 (215)
++|++++..
T Consensus 440 lv~~~~~~~ 448 (591)
T 1z6t_A 440 LQVDFLTEK 448 (591)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999999887
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.82 E-value=5.7e-21 Score=179.57 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=111.6
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCCC--CHHHHHHHHHHHhcCCchhHHHHHH
Q 041805 3 ALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYER--EKEVWESAINKLQRILHPSILEVLK 80 (215)
Q Consensus 3 ~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~k--~~~~w~~~l~~l~~~~~~~i~~~l~ 80 (215)
+|+++|||+||++.. +.. ..++..+| |+|+||||+++|+.|+++ +...|+.. ....+..+|.
T Consensus 297 ~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLe 360 (1221)
T 1vt4_I 297 TLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIE 360 (1221)
T ss_dssp CCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHc-CCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHH
Confidence 799999999999984 433 12233333 999999999999999987 67888753 3578999999
Q ss_pred HhhcCccHHH-HHHHHHHhhccCCC--CHHHHHHHHHHcCC-chhhhHHHHHhccCceecc-CCeEEecHHHHHHH
Q 041805 81 ISYDGLDNKE-KNIFLDVACFFQGE--DVNLVMKFLNASGF-YPKLGRSVLVDKSLIVKSN-NNKITMHDLLQELG 151 (215)
Q Consensus 81 ~Sy~~L~~~~-k~~fl~~a~fp~~~--~~~~l~~~w~~~g~-~~~~~l~~L~~~~Ll~~~~-~~~~~mHdlvr~~a 151 (215)
+||+.||++. |+||++||+||+++ +.+.++.+|+++|. .++.+|++|+++||++..+ .++|+|||++++++
T Consensus 361 lSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 9999999999 99999999999986 77889999999864 3577999999999999863 56799999998865
No 5
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.95 E-value=7.3e-05 Score=61.98 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=86.2
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCC-CCHHHHHHHHHHHhcCCchhHHHHH
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYE-REKEVWESAINKLQRILHPSILEVL 79 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~-k~~~~w~~~l~~l~~~~~~~i~~~l 79 (215)
+.||+.+|+.+++.... +..... --.+.+..|++.|+|.|+++..++..+.. .+...+ ...+.. .+...+
T Consensus 200 l~pl~~~e~~~~l~~~~-~~~~~~-~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~ 270 (350)
T 2qen_A 200 VKPFDKDTSVEFLKRGF-REVNLD-VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLE----VAKGLI 270 (350)
T ss_dssp CCCCCHHHHHHHHHHHH-HTTTCC-CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHH----HHHHHH
T ss_pred CCCCCHHHHHHHHHHHH-HHcCCC-CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHH----HHHHHH
Confidence 57999999999998754 222111 11346788999999999999998875422 222222 111110 111111
Q ss_pred HHhhcCc---cHHHHHHHHHHhhccCCCCHHHHHHHHHHc--CCch---hhhHHHHHhccCceeccCCeEEe-cHHHHHH
Q 041805 80 KISYDGL---DNKEKNIFLDVACFFQGEDVNLVMKFLNAS--GFYP---KLGRSVLVDKSLIVKSNNNKITM-HDLLQEL 150 (215)
Q Consensus 80 ~~Sy~~L---~~~~k~~fl~~a~fp~~~~~~~l~~~w~~~--g~~~---~~~l~~L~~~~Ll~~~~~~~~~m-Hdlvr~~ 150 (215)
.-.+..+ ++..+..+..+|+ ...+...+....... |... ..+++.|.+.+||... +++|++ |.++|++
T Consensus 271 ~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~ 347 (350)
T 2qen_A 271 MGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATV 347 (350)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHH
T ss_pred HHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHH
Confidence 1122222 7889999999998 234666666655322 3332 5679999999999876 577876 5677765
Q ss_pred H
Q 041805 151 G 151 (215)
Q Consensus 151 a 151 (215)
-
T Consensus 348 ~ 348 (350)
T 2qen_A 348 L 348 (350)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.84 E-value=0.0001 Score=61.13 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=85.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccCC-CCHHHHHH-HHHHHhcCCchhHHHH
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLYE-REKEVWES-AINKLQRILHPSILEV 78 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~~-k~~~~w~~-~l~~l~~~~~~~i~~~ 78 (215)
++||+.+|+.+++....-......+.. ..|++.|+|.|+++..++..+.. .+.+.|-. ..+.. ...+...
T Consensus 206 l~~l~~~e~~~~l~~~~~~~~~~~~~~----~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 277 (357)
T 2fna_A 206 LKPFSREEAIEFLRRGFQEADIDFKDY----EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA----KKLILKE 277 (357)
T ss_dssp ECCCCHHHHHHHHHHHHHHHTCCCCCH----HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH----HHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCcH----HHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH----HHHHHHH
Confidence 479999999999987541111112222 78999999999999999876532 23333321 11111 0112222
Q ss_pred HH-Hhh--cCccHHHHHHHHHHhhccCCCCHHHHHHHHH-HcC--Cc---hhhhHHHHHhccCceeccCCeEEe-cHHHH
Q 041805 79 LK-ISY--DGLDNKEKNIFLDVACFFQGEDVNLVMKFLN-ASG--FY---PKLGRSVLVDKSLIVKSNNNKITM-HDLLQ 148 (215)
Q Consensus 79 l~-~Sy--~~L~~~~k~~fl~~a~fp~~~~~~~l~~~w~-~~g--~~---~~~~l~~L~~~~Ll~~~~~~~~~m-Hdlvr 148 (215)
+. +.+ ..|++..+..+..+|+- . +...+..... ..| .. ...+++.|++.++|... ++.|++ |.+++
T Consensus 278 l~~~~~~~~~l~~~~~~~l~~la~g--~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~-~~~y~f~~~~~~ 353 (357)
T 2fna_A 278 FENFLHGREIARKRYLNIMRTLSKC--G-KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE-GEKYCPSEPLIS 353 (357)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHTTC--B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES-SSCEEESSHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHcC--C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec-CCEEEecCHHHH
Confidence 22 222 16889999999999982 2 5566554432 234 22 25689999999999876 467885 67888
Q ss_pred HH
Q 041805 149 EL 150 (215)
Q Consensus 149 ~~ 150 (215)
++
T Consensus 354 ~~ 355 (357)
T 2fna_A 354 LA 355 (357)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 7
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.84 E-value=0.002 Score=54.54 Aligned_cols=137 Identities=11% Similarity=0.018 Sum_probs=79.7
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc------CCchhHHhhhccc------CCC---CHHHHHH
Q 041805 1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ------GVPLALKVLGCFL------YER---EKEVWES 62 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~------GlPLal~~ig~~L------~~k---~~~~w~~ 62 (215)
++||+.++++++|...+ |...... .+....|++.|+ |.|..+..+.... .+. +...+..
T Consensus 212 l~~l~~~e~~~ll~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~ 288 (412)
T 1w5s_A 212 LPAYKSRELYTILEQRAELGLRDTVWE---PRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRK 288 (412)
T ss_dssp CCCCCHHHHHHHHHHHHHHHBCTTSCC---HHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 57999999999997654 3322222 356678888899 9997555443221 111 2344444
Q ss_pred HHHHHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccC----CCCHHHHHHHH-----HHcCCc------hhhhHHHH
Q 041805 63 AINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQ----GEDVNLVMKFL-----NASGFY------PKLGRSVL 127 (215)
Q Consensus 63 ~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~----~~~~~~l~~~w-----~~~g~~------~~~~l~~L 127 (215)
++..... ...+.-+++.||++.+.++..+|.++. .++...+...+ ...|.. ...+++.|
T Consensus 289 ~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L 362 (412)
T 1w5s_A 289 AVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHL 362 (412)
T ss_dssp HHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHH
T ss_pred HHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 3332110 234556788999999999999997652 22455444333 222322 14679999
Q ss_pred HhccCceecc-----CCeEEecHH
Q 041805 128 VDKSLIVKSN-----NNKITMHDL 146 (215)
Q Consensus 128 ~~~~Ll~~~~-----~~~~~mHdl 146 (215)
++.+||.... .|+|++|++
T Consensus 363 ~~~gli~~~~~~~~~~g~~~~~~l 386 (412)
T 1w5s_A 363 TSLGLVDAKPSGRGMRGRTTLFRL 386 (412)
T ss_dssp HHTTSEEEECC-------CCEEEE
T ss_pred HhCCCEEeecccCCCCCceeEEEe
Confidence 9999998653 344555544
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.30 E-value=0.88 Score=37.67 Aligned_cols=126 Identities=16% Similarity=-0.038 Sum_probs=76.5
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CCch-hHHhhhccc----C--CCCHHHHHHHHHHH
Q 041805 1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ---GVPL-ALKVLGCFL----Y--EREKEVWESAINKL 67 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~---GlPL-al~~ig~~L----~--~k~~~~w~~~l~~l 67 (215)
++|++.++..++|...+ |.....++ +....+++.|+ |-|. |+.++-... . .-+...+..+++..
T Consensus 194 l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 194 FKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp ECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 47899999999999875 33222222 34566777777 8776 443322211 1 12577777777654
Q ss_pred hcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccCCCCH-HHHHHHHHHcCCch------hhhHHHHHhccCceec
Q 041805 68 QRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGEDV-NLVMKFLNASGFYP------KLGRSVLVDKSLIVKS 136 (215)
Q Consensus 68 ~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~~~-~~l~~~w~~~g~~~------~~~l~~L~~~~Ll~~~ 136 (215)
. ...+..+++.|+++.+..+..++....+-+. +....+....|..+ ..+++.|...++++..
T Consensus 271 ~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 271 E-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR 339 (384)
T ss_dssp H-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred h-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence 2 2456778899999888888877761110111 12233333334222 4578899999999864
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.28 E-value=2.3 Score=34.82 Aligned_cols=126 Identities=11% Similarity=0.035 Sum_probs=75.1
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CCchhH-Hhhhccc-----CC---CCHHHHHHHHH
Q 041805 1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ---GVPLAL-KVLGCFL-----YE---REKEVWESAIN 65 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~---GlPLal-~~ig~~L-----~~---k~~~~w~~~l~ 65 (215)
++|++.++..++|...+ +...... .++...+++.++ |.|..+ .++.... .+ -+...++.++.
T Consensus 194 l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~ 270 (386)
T 2qby_A 194 FPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKE 270 (386)
T ss_dssp ECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHH
Confidence 47899999999999865 2222222 345566777777 988743 3322221 11 14556666655
Q ss_pred HHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccC-C--C-CHHHH----HHHHHHcCCch------hhhHHHHHhcc
Q 041805 66 KLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQ-G--E-DVNLV----MKFLNASGFYP------KLGRSVLVDKS 131 (215)
Q Consensus 66 ~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~-~--~-~~~~l----~~~w~~~g~~~------~~~l~~L~~~~ 131 (215)
... ...+.-++..+|+..+..+..++.+.+ + . +...+ ..+-...|..+ ..+++.|.+.+
T Consensus 271 ~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~g 343 (386)
T 2qby_A 271 EIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVG 343 (386)
T ss_dssp HHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHT
T ss_pred HHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCC
Confidence 432 245667788899988888888886432 2 1 34333 22222233322 45799999999
Q ss_pred Cceec
Q 041805 132 LIVKS 136 (215)
Q Consensus 132 Ll~~~ 136 (215)
+++..
T Consensus 344 li~~~ 348 (386)
T 2qby_A 344 ILTAK 348 (386)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 99864
No 10
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=88.23 E-value=0.41 Score=35.51 Aligned_cols=31 Identities=13% Similarity=0.372 Sum_probs=20.2
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc-cccC
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG-MKVC 213 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~-~~~l 213 (215)
.+|.. | .+.+|++|+|++|+|+.++.+ ++.|
T Consensus 71 ~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 104 (174)
T 2r9u_A 71 AIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNL 104 (174)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccChhHhCCcchhhEEECCCCccceeCHHHhccc
Confidence 55554 3 567777777777777777765 4443
No 11
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=87.97 E-value=1.6 Score=36.02 Aligned_cols=148 Identities=13% Similarity=0.048 Sum_probs=83.4
Q ss_pred CCCCCHHHHHHHHHHhhc---CCCCCCchHHHHHHHHHHHh---------cCCchhHHhhhc-ccC-----C---CCHHH
Q 041805 1 MEALEYHLALERFSRHAF---KQNHPDVGYEELSSKAMKYA---------QGVPLALKVLGC-FLY-----E---REKEV 59 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af---~~~~~~~~~~~~~~~iv~~c---------~GlPLal~~ig~-~L~-----~---k~~~~ 59 (215)
++|++.++..+++...+- ...... .+....+++.+ +|.|..+..+.. ... + -+...
T Consensus 190 ~~pl~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~ 266 (389)
T 1fnn_A 190 FSPYTKDQIFDILLDRAKAGLAEGSYS---EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPED 266 (389)
T ss_dssp CCCCBHHHHHHHHHHHHHHHBCTTSSC---HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhcCCCCCC---HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHH
Confidence 478999999999988752 122222 35667788888 687644433222 111 1 13334
Q ss_pred HHHHHHHHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhcc---CC--CCHHHHHHHHHH----cCCch------hhhH
Q 041805 60 WESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF---QG--EDVNLVMKFLNA----SGFYP------KLGR 124 (215)
Q Consensus 60 w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp---~~--~~~~~l~~~w~~----~g~~~------~~~l 124 (215)
...+....... .+.-.+..|+++.+.++..++.+. .+ .+...+...+.. .|..+ ..++
T Consensus 267 v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l 339 (389)
T 1fnn_A 267 VRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYL 339 (389)
T ss_dssp HHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 44444332211 122335668888888888888665 33 355555544432 33221 3579
Q ss_pred HHHHhccCceeccC-------CeEE-------ecHHHHHHHHHHHhhc
Q 041805 125 SVLVDKSLIVKSNN-------NKIT-------MHDLLQELGRDIVSKE 158 (215)
Q Consensus 125 ~~L~~~~Ll~~~~~-------~~~~-------mHdlvr~~a~~i~~~e 158 (215)
+.|.+.+++..... |+++ .|++++.+...+..+|
T Consensus 340 ~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 340 NDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp HHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 99999999997543 3322 4566666666555443
No 12
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=87.14 E-value=0.26 Score=40.46 Aligned_cols=32 Identities=16% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
.+|..+ .+.+|++|+|++|+|..+|.++..|+
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~ 150 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLN 150 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCT
T ss_pred chhHHHhccCCCCEEECCCCccccCcHHHhcCc
Confidence 677766 66788888888888888887776654
No 13
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=87.04 E-value=0.26 Score=45.30 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=19.8
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
++|..| .+.+|++|+|++|+|..+|.+++.|+
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLC 316 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCT
T ss_pred ccChhhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 556655 55666666666666666666655554
No 14
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=86.80 E-value=0.52 Score=34.68 Aligned_cols=31 Identities=16% Similarity=0.336 Sum_probs=20.4
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc-cccC
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG-MKVC 213 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~-~~~l 213 (215)
.+|.. | .+.+|++|+|++|+|+.++.+ ++.|
T Consensus 68 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l 101 (170)
T 3g39_A 68 VLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNL 101 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccChhhccCCCCCCEEECCCCccCEeCHHHhcCC
Confidence 55554 3 567788888888888777764 4433
No 15
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=86.71 E-value=12 Score=30.55 Aligned_cols=126 Identities=14% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCCCCHHHHHHHHHHhh---cCCCCCCchHHHHHHHHHHHhc---CCch-hHHhhhcccC-----C---CCHHHHHHHHH
Q 041805 1 MEALEYHLALERFSRHA---FKQNHPDVGYEELSSKAMKYAQ---GVPL-ALKVLGCFLY-----E---REKEVWESAIN 65 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~a---f~~~~~~~~~~~~~~~iv~~c~---GlPL-al~~ig~~L~-----~---k~~~~w~~~l~ 65 (215)
++|++.++..+++...+ +......+ +....+++.++ |.|- ++.++..... + -+...++.++.
T Consensus 198 l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~ 274 (387)
T 2v1u_A 198 FPPYTAPQLRDILETRAEEAFNPGVLDP---DVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARA 274 (387)
T ss_dssp BCCCCHHHHHHHHHHHHHHHBCTTTBCS---SHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHhhccCCCCCH---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 47899999999999874 33222222 34556777777 9983 3333222211 1 25666776666
Q ss_pred HHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhccCCC---CHHHHHH----HHHHcCCch------hhhHHHHHhccC
Q 041805 66 KLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFFQGE---DVNLVMK----FLNASGFYP------KLGRSVLVDKSL 132 (215)
Q Consensus 66 ~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~---~~~~l~~----~w~~~g~~~------~~~l~~L~~~~L 132 (215)
... ...+.-++..|+++.+..++.++....+. ....+.+ +....|..+ ..+++.|...++
T Consensus 275 ~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gl 347 (387)
T 2v1u_A 275 EIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGI 347 (387)
T ss_dssp HHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred HHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCC
Confidence 542 23466678899999888888787543332 3443333 222334322 457899999999
Q ss_pred ceec
Q 041805 133 IVKS 136 (215)
Q Consensus 133 l~~~ 136 (215)
++..
T Consensus 348 i~~~ 351 (387)
T 2v1u_A 348 VKSR 351 (387)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 9974
No 16
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=86.58 E-value=0.37 Score=44.32 Aligned_cols=33 Identities=21% Similarity=0.419 Sum_probs=27.7
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccCCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCET 215 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~~ 215 (215)
.+|..| .+.+|++|+|++|+|+.+|.++..|.+
T Consensus 261 ~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 261 ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 788877 778999999999999999988877653
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=86.25 E-value=0.31 Score=39.98 Aligned_cols=33 Identities=15% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccCCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCET 215 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~~ 215 (215)
.+|..+ .+++|++|+|++|+|..+|.+++.|++
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~ 128 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAG 128 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTT
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCC
Confidence 788876 789999999999999999998877653
No 18
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=85.44 E-value=0.75 Score=33.99 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=12.7
Q ss_pred CCCCceEEEcCCCCccccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+++|++|+|++|+|+.++.+
T Consensus 55 ~l~~L~~L~Ls~N~l~~i~~~ 75 (174)
T 2r9u_A 55 HLVNLQQLYFNSNKLTAIPTG 75 (174)
T ss_dssp TCTTCCEEECCSSCCCCCCTT
T ss_pred CCcCCCEEECCCCCCCccChh
Confidence 456666666666666666554
No 19
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=83.68 E-value=0.85 Score=35.18 Aligned_cols=25 Identities=20% Similarity=0.389 Sum_probs=12.3
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccc
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~ 207 (215)
++|..+ .+.+|++|+|++|+|..++
T Consensus 126 ~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 126 ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred ccCcccccCCCCCEEECCCCcCCccC
Confidence 444444 3455555555555555544
No 20
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=83.20 E-value=0.98 Score=33.13 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=13.0
Q ss_pred CCCCceEEEcCCCCccccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+.+|++|+|++|+|+.++.+
T Consensus 52 ~l~~L~~L~Ls~N~l~~l~~~ 72 (170)
T 3g39_A 52 RLTQLTRLDLDNNQLTVLPAG 72 (170)
T ss_dssp TCTTCSEEECCSSCCCCCCTT
T ss_pred CcccCCEEECCCCCcCccChh
Confidence 456666666666666666654
No 21
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=83.00 E-value=0.55 Score=41.84 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=9.3
Q ss_pred CCCceEEEcCCCCccccccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWDGMK 211 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~~~~ 211 (215)
+.+|++|+|++|+|+.+|.++.
T Consensus 462 l~~L~~L~Ls~N~l~~lp~~~~ 483 (567)
T 1dce_A 462 LLLVTHLDLSHNRLRALPPALA 483 (567)
T ss_dssp GTTCCEEECCSSCCCCCCGGGG
T ss_pred cccCcEeecCcccccccchhhh
Confidence 3444444444444444443333
No 22
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=82.22 E-value=1.1 Score=34.34 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=13.6
Q ss_pred CCCCC-C-CCCCceEEEcCCCCcccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L 206 (215)
.+|.. | .+.+|++|+|++|+|..+
T Consensus 94 ~l~~~~f~~l~~L~~L~L~~N~l~~~ 119 (220)
T 2v9t_B 94 ELPKSLFEGLFSLQLLLLNANKINCL 119 (220)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred ccCHhHccCCCCCCEEECCCCCCCEe
Confidence 44444 2 356666666666666655
No 23
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=81.93 E-value=1.3 Score=31.36 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=12.2
Q ss_pred CCCCceEEEcCCCCccc-ccc
Q 041805 189 SAKKLVFLEMPNSSIEQ-LWD 208 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~-L~~ 208 (215)
.+.+|++|+|++|+|.. +|.
T Consensus 62 ~l~~L~~L~Ls~n~i~~~~~~ 82 (149)
T 2je0_A 62 KLNKLKKLELSDNRVSGGLEV 82 (149)
T ss_dssp CCTTCCEEECCSSCCCSCTHH
T ss_pred cCCCCCEEECCCCcccchHHH
Confidence 45666666666666665 443
No 24
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=81.08 E-value=0.9 Score=34.13 Aligned_cols=26 Identities=12% Similarity=0.204 Sum_probs=18.6
Q ss_pred CCCC-CC-CCCCceEEEcCCCCcccccc
Q 041805 183 SLPS-NI-SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|. .| .+.+|++|+|++|+|+.++.
T Consensus 68 ~i~~~~f~~l~~L~~L~Ls~N~l~~i~~ 95 (193)
T 2wfh_A 68 TLSNQSFSNMTQLLTLILSYNRLRCIPP 95 (193)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred EeCHhHccCCCCCCEEECCCCccCEeCH
Confidence 4443 35 56888888888888888774
No 25
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=80.55 E-value=2.1 Score=32.18 Aligned_cols=48 Identities=10% Similarity=-0.001 Sum_probs=35.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhc
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGC 50 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~ 50 (215)
++|++.+|..+++...+....... -.+....|++.|+|.|..+..+..
T Consensus 182 l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~ 229 (250)
T 1njg_A 182 LKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD 229 (250)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 578999999999998874332211 135567899999999988876543
No 26
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=79.66 E-value=1.4 Score=31.20 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=21.3
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
++|..+ +.+|++|+|++|+|+.|+.+.
T Consensus 24 ~vP~~l-p~~l~~L~Ls~N~l~~l~~~~ 50 (130)
T 3rfe_A 24 SLPTAF-PVDTTELVLTGNNLTALPPGL 50 (130)
T ss_dssp TSCSCC-CTTCSEEECTTSCCSSCCTTT
T ss_pred cCCCCC-CcCCCEEECCCCcCCccChhh
Confidence 566654 367899999999999998764
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=79.51 E-value=1.2 Score=39.09 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=16.9
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+++|++|+|++|+|+.++.+
T Consensus 90 ~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 90 TIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 44443 4 467777777777777777644
No 28
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=78.13 E-value=1.8 Score=32.27 Aligned_cols=18 Identities=17% Similarity=0.241 Sum_probs=10.9
Q ss_pred CCCCceEEEcCCCCcccc
Q 041805 189 SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L 206 (215)
.+.+|++|+|++|+|..+
T Consensus 100 ~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp TCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEEECCCCcCCee
Confidence 456666666666666555
No 29
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=78.10 E-value=1.8 Score=33.09 Aligned_cols=30 Identities=7% Similarity=0.138 Sum_probs=20.6
Q ss_pred CCCC-CCCCceEEEcCCCCcccc-ccccccCC
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQL-WDGMKVCE 214 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L-~~~~~~l~ 214 (215)
|..| .+.+|++|+|++|+|+.+ |..++.++
T Consensus 122 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~ 153 (220)
T 2v70_A 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH 153 (220)
T ss_dssp TTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred HhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence 4555 567888888888888877 55555443
No 30
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=78.03 E-value=1.5 Score=33.72 Aligned_cols=32 Identities=25% Similarity=0.207 Sum_probs=24.9
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
.+|.. | .+.+|++|+|++|+|..+|.++..++
T Consensus 102 ~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~ 135 (229)
T 3e6j_A 102 VLPSAVFDRLVHLKELFMCCNKLTELPRGIERLT 135 (229)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCT
T ss_pred ccChhHhCcchhhCeEeccCCcccccCcccccCC
Confidence 55554 4 57889999999999999988877664
No 31
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=76.77 E-value=2.2 Score=31.97 Aligned_cols=27 Identities=22% Similarity=0.438 Sum_probs=21.6
Q ss_pred CCCC-CC-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPS-NI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
++|. .| .+.+|++|+|++|+|..++.+
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 5554 45 678999999999999998875
No 32
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=76.47 E-value=1.3 Score=39.32 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=27.2
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
++|..| .+++|++|+|++|+|+.+| ++..|+
T Consensus 477 ~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~ 508 (567)
T 1dce_A 477 ALPPALAALRCLEVLQASDNALENVD-GVANLP 508 (567)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCS
T ss_pred ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCC
Confidence 888888 7899999999999999999 776665
No 33
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=76.40 E-value=1.1 Score=32.37 Aligned_cols=21 Identities=29% Similarity=0.056 Sum_probs=13.8
Q ss_pred CCCCceEEEcCCCCccc-cccc
Q 041805 189 SAKKLVFLEMPNSSIEQ-LWDG 209 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~-L~~~ 209 (215)
.+.+|++|+|++|+|.. +|..
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~ 90 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDML 90 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHH
T ss_pred cCCCCCEEECcCCcCchHHHHH
Confidence 56677777777777766 4433
No 34
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=76.23 E-value=0.72 Score=33.46 Aligned_cols=20 Identities=25% Similarity=0.258 Sum_probs=11.9
Q ss_pred CCCCceEEEcCCCCcccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+++|++|+|++|+|..++.
T Consensus 118 ~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 118 KLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp SCSCCCEEECCSSGGGTSTT
T ss_pred cCCCCCEEEeeCCcCcchHH
Confidence 44566666666666665554
No 35
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=75.87 E-value=2 Score=32.06 Aligned_cols=25 Identities=16% Similarity=0.353 Sum_probs=18.5
Q ss_pred CCCC-CCCCceEEEcCCCCccccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
|..| .+.+|++|+|++|+|+.++.+
T Consensus 71 ~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 71 PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred HhHcCCcccCCEEECCCCcCCccCHH
Confidence 5556 567888888888888877654
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=75.30 E-value=1.8 Score=37.95 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=16.9
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|+.++.+
T Consensus 114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 142 (635)
T 4g8a_A 114 SLALGAFSGLSSLQKLVAVETNLASLENF 142 (635)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCCSTTC
T ss_pred CCCHHHhcCCCCCCEEECCCCcCCCCChh
Confidence 45543 4 466777777777777776643
No 37
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=75.25 E-value=1.1 Score=36.32 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=17.2
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|..| .+.+|++|+|++|+|+.+|..+..+
T Consensus 205 ~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l 236 (317)
T 3o53_A 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (317)
T ss_dssp EECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred cchhhhcccCcccEEECcCCcccchhhHhhcC
Confidence 444444 4456666666666666666555443
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=73.66 E-value=1.4 Score=35.73 Aligned_cols=31 Identities=26% Similarity=0.327 Sum_probs=20.2
Q ss_pred CCCCCC-CCCCceEEEcCCCCcc-ccccccccC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIE-QLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~-~L~~~~~~l 213 (215)
.+|..| .+++|++|+|++|+|. .+|.++..+
T Consensus 140 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 172 (313)
T 1ogq_A 140 TLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172 (313)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCC
T ss_pred cCChHHhcCCCCCeEECcCCcccCcCCHHHhhh
Confidence 456555 5677777777777776 666665544
No 39
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=73.00 E-value=2.6 Score=32.12 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=21.2
Q ss_pred CCCC-CCCCceEEEcCCCCcccccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
|..| .+.+|++|+|++|+|+.++.+.
T Consensus 73 ~~~~~~l~~L~~L~Ls~N~l~~l~~~~ 99 (220)
T 2v9t_B 73 PDAFQGLRSLNSLVLYGNKITELPKSL 99 (220)
T ss_dssp TTTTTTCSSCCEEECCSSCCCCCCTTT
T ss_pred HHHhhCCcCCCEEECCCCcCCccCHhH
Confidence 6666 6789999999999999888764
No 40
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=72.64 E-value=1.1 Score=36.32 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCCCCC-CCCCceEEEcCCCCcc-ccccccccCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIE-QLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~-~L~~~~~~l~ 214 (215)
.+|..| .+++|++|+|++|+|. .+|..+..++
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 149 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC
Confidence 566666 5678888888888887 6776666554
No 41
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=72.55 E-value=3.2 Score=33.15 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=17.8
Q ss_pred CCCC-CC-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPS-NI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|. .| .+.+|++|+|++|+|..++.+
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~ 142 (290)
T 1p9a_G 114 SLPLGALRGLGELQELYLKGNELKTLPPG 142 (290)
T ss_dssp CCCSSTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred ccCHHHHcCCCCCCEEECCCCCCCccChh
Confidence 4543 34 567777777777777777654
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=72.05 E-value=1.4 Score=39.59 Aligned_cols=33 Identities=18% Similarity=0.119 Sum_probs=28.8
Q ss_pred CCCCCC-CCCCceEEEcCCCCccc------------------cccccc--cCCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQ------------------LWDGMK--VCET 215 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~------------------L~~~~~--~l~~ 215 (215)
.+|..+ ++++|++|+|++|+|.. +|.++. +|++
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred cCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 588887 78999999999999999 999887 7653
No 43
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=71.94 E-value=3.7 Score=29.84 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=17.1
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|..++.+
T Consensus 90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 118 (177)
T 2o6r_A 90 SLPNGVFDKLTQLKELALDTNQLKSVPDG 118 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCHHHhhCCcccCEEECcCCcceEeCHH
Confidence 44443 3 456777777777777777654
No 44
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=71.35 E-value=2.8 Score=36.85 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=14.4
Q ss_pred CCCC-CCCCceEEEcCCCCccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~ 207 (215)
|..| .+.+|++|+|++|+|..++
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~~ 120 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASLE 120 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCSS
T ss_pred hhhcCCcccCCEEEccCCcccccc
Confidence 5555 5566666666666666665
No 45
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=71.07 E-value=2.2 Score=34.77 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=17.8
Q ss_pred CCC-CCCCceEEEcCCCCcccccccc
Q 041805 186 SNI-SAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 186 ~~~-~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
..| .+.+|++|+|++|+|..+|.+.
T Consensus 74 ~~~~~l~~L~~L~l~~N~l~~~~~~~ 99 (347)
T 2ifg_A 74 DAFHFTPRLSRLNLSFNALESLSWKT 99 (347)
T ss_dssp TGGGSCSCCCEEECCSSCCSCCCSTT
T ss_pred HHhcCCcCCCEEeCCCCccceeCHHH
Confidence 344 5778888888888888777653
No 46
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=70.98 E-value=2.1 Score=35.10 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+++|++|||++|+|+.+|.+
T Consensus 192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 192 ELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp CCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred CCCHHHhccCcccchhhcCCCCcCccChh
Confidence 78875 4 679999999999999999864
No 47
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=70.98 E-value=2.3 Score=34.17 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=13.5
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~ 208 (215)
++|..+. ++|++|||++|+|+.+|.
T Consensus 267 ~ip~~~~-~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 267 QVPKGLP-AKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp SCCSSCC-SEEEEEECCSSCCCSCCC
T ss_pred hhhhhcc-CCceEEECCCCCCCCChh
Confidence 4554444 555555555555555543
No 48
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=70.76 E-value=2.5 Score=30.85 Aligned_cols=20 Identities=30% Similarity=0.306 Sum_probs=12.6
Q ss_pred CCCCceEEEcCCCCcccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+.+|++|+|++|+|..++.
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~ 105 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGD 105 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGG
T ss_pred cCCCCCEEECCCCcCCcchh
Confidence 45666666666666666654
No 49
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=70.59 E-value=2.2 Score=34.71 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=19.8
Q ss_pred CCCC-CC-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPS-NI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|. .| .+.+|++|+|++|+|+.++.+
T Consensus 46 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 74 (347)
T 2ifg_A 46 HLELRDLRGLGELRNLTIVKSGLRFVAPD 74 (347)
T ss_dssp EECGGGSCSCCCCSEEECCSSCCCEECTT
T ss_pred CcChhHhccccCCCEEECCCCccceeCHH
Confidence 4553 45 678888888888888888754
No 50
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=69.82 E-value=3.5 Score=36.03 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=22.7
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccc-cccC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDG-MKVC 213 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~-~~~l 213 (215)
++|..+ .+.+|++|+|++|+|+.+|.+ .+.+
T Consensus 464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l 496 (562)
T 3a79_B 464 SIPKDVTHLQALQELNVASNQLKSVPDGVFDRL 496 (562)
T ss_dssp CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTC
T ss_pred ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcC
Confidence 677654 677888888888888888876 4444
No 51
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=69.80 E-value=3.9 Score=29.71 Aligned_cols=27 Identities=30% Similarity=0.498 Sum_probs=20.0
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|+.++.+
T Consensus 66 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 94 (177)
T 2o6r_A 66 SLPDGVFDKLTKLTILYLHENKLQSLPNG 94 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred EeChhHccCCCccCEEECCCCCccccCHH
Confidence 55554 3 578888888888888888765
No 52
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=69.45 E-value=3.6 Score=31.32 Aligned_cols=24 Identities=17% Similarity=0.101 Sum_probs=15.6
Q ss_pred CCCCceEEEcCCCCcccc-cccccc
Q 041805 189 SAKKLVFLEMPNSSIEQL-WDGMKV 212 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L-~~~~~~ 212 (215)
.+.+|++|+|++|+|..+ |..+..
T Consensus 103 ~l~~L~~L~Ls~N~l~~~~~~~~~~ 127 (220)
T 2v70_A 103 GLESLKTLMLRSNRITCVGNDSFIG 127 (220)
T ss_dssp TCSSCCEEECTTSCCCCBCTTSSTT
T ss_pred CCcCCCEEECCCCcCCeECHhHcCC
Confidence 567777777777777776 333433
No 53
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=69.38 E-value=2.3 Score=39.03 Aligned_cols=31 Identities=16% Similarity=0.450 Sum_probs=16.1
Q ss_pred CCCCCC-CCCCceEEEcCCCCcc-ccccccccC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIE-QLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~-~L~~~~~~l 213 (215)
.+|..+ .+++|++|||++|++. .+|...+.|
T Consensus 671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l 703 (768)
T 3rgz_A 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGC
T ss_pred CCChHHhCCCCCCEEECCCCcccCcCChHHhCC
Confidence 455554 4555555555555555 444444443
No 54
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=69.26 E-value=2.8 Score=33.93 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=14.7
Q ss_pred CCCCceEEEcCCCCccccccccccC
Q 041805 189 SAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+.+|++|+|++|+|..+|.++..+
T Consensus 239 ~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp GCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred CCCCCCEEECCCCcCeecChhhhcC
Confidence 3456666666666666666555444
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=69.06 E-value=2.9 Score=33.74 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=11.4
Q ss_pred CCCceEEEcCCCCcccccccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWDGMKV 212 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~~~~~ 212 (215)
+.+|++|+|++|+|..+|.++..
T Consensus 239 l~~L~~L~L~~N~l~~lp~~l~~ 261 (330)
T 1xku_A 239 TPHLRELHLNNNKLVKVPGGLAD 261 (330)
T ss_dssp STTCCEEECCSSCCSSCCTTTTT
T ss_pred CCCCCEEECCCCcCccCChhhcc
Confidence 34555555555555555544433
No 56
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=69.00 E-value=3.8 Score=32.06 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=15.3
Q ss_pred CCCCCC--CCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNI--SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~--~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|... .+++|++|+|++|+|..++.
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~~ 102 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQALPI 102 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCCCCCT
T ss_pred eeChhhhcCCCCCCEEECCCCcCCcCCH
Confidence 444432 35666666666666666653
No 57
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=68.86 E-value=2.7 Score=33.56 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=20.4
Q ss_pred CCCCCC-CCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~ 208 (215)
++|..+ .+.+|++|+|++|+|+.++.
T Consensus 91 ~l~~~~~~l~~L~~L~l~~N~l~~l~~ 117 (290)
T 1p9a_G 91 SLPLLGQTLPALTVLDVSFNRLTSLPL 117 (290)
T ss_dssp SCCCCTTTCTTCCEEECCSSCCCCCCS
T ss_pred cCchhhccCCCCCEEECCCCcCcccCH
Confidence 677766 56888888888888888873
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=68.71 E-value=3.4 Score=37.18 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=17.7
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
++|. .+.+|++|+|++|+|+.+|.++++|+
T Consensus 255 ~lp~--~~~~L~~L~Ls~N~L~~lp~~l~~l~ 284 (622)
T 3g06_A 255 SLPM--LPSGLLSLSVYRNQLTRLPESLIHLS 284 (622)
T ss_dssp CCCC--CCTTCCEEECCSSCCCSCCGGGGGSC
T ss_pred cCCc--ccccCcEEeCCCCCCCcCCHHHhhcc
Confidence 4444 34566666666666666666655544
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=67.65 E-value=1.3 Score=36.38 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=21.0
Q ss_pred CCCCC-CCCCceEEEcCCCCcccccccc-ccCC
Q 041805 184 LPSNI-SAKKLVFLEMPNSSIEQLWDGM-KVCE 214 (215)
Q Consensus 184 lP~~~-~~~~L~~L~L~~s~i~~L~~~~-~~l~ 214 (215)
+|+.+ .+++|++|+|++|+|+.+|.++ +.++
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~ 301 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGIFDRLT 301 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHHHhcCC
Confidence 34444 5677888888888888888764 4443
No 60
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=67.63 E-value=3.3 Score=30.17 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=13.4
Q ss_pred CCCCceEEEcCCCCccccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+++|++|+|++|.|..++..
T Consensus 111 ~l~~L~~L~l~~N~i~~~~~~ 131 (176)
T 1a9n_A 111 SLKSLTYLCILRNPVTNKKHY 131 (176)
T ss_dssp GCTTCCEEECCSSGGGGSTTH
T ss_pred cCCCCCEEEecCCCCCCcHhH
Confidence 456677777777766666553
No 61
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=67.53 E-value=4.1 Score=33.70 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=8.4
Q ss_pred CCCceEEEcCCCCcccc
Q 041805 190 AKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L 206 (215)
+++|++|+|++|+|..+
T Consensus 140 l~~L~~L~L~~n~l~~~ 156 (390)
T 3o6n_A 140 TPKLTTLSMSNNNLERI 156 (390)
T ss_dssp CTTCCEEECCSSCCCBC
T ss_pred CCCCcEEECCCCccCcc
Confidence 44455555555554444
No 62
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=67.29 E-value=3.7 Score=32.66 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=9.8
Q ss_pred CCCCceEEEcCCCCccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~ 207 (215)
.+.+|++|+|++|+|..++
T Consensus 197 ~l~~L~~L~L~~N~l~~~~ 215 (306)
T 2z66_A 197 SLSSLQVLNMSHNNFFSLD 215 (306)
T ss_dssp TCTTCCEEECTTSCCSBCC
T ss_pred CCCCCCEEECCCCccCccC
Confidence 3455555555555555443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=67.04 E-value=2.6 Score=33.94 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=24.4
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
.+|....+.+|++|+|++|+|..++.++..++
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~ 214 (317)
T 3o53_A 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214 (317)
T ss_dssp EEECCCCCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred ccccccccccCCEEECCCCcCCcchhhhcccC
Confidence 55665567889999999999988887766554
No 64
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=66.40 E-value=47 Score=26.27 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=72.6
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhcccC------CC---CHHHHHHHHHHHhcCC
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFLY------ER---EKEVWESAINKLQRIL 71 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L~------~k---~~~~w~~~l~~l~~~~ 71 (215)
+++++.+|...++.+.+....... -.+....++++|+|.|-.+..+...+. +. +......++..
T Consensus 165 l~~~~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~----- 237 (324)
T 1hqc_A 165 LEYYTPEELAQGVMRDARLLGVRI--TEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA----- 237 (324)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH-----
T ss_pred cCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH-----
Confidence 468899999999988773322211 235667889999999987765543321 11 23333333322
Q ss_pred chhHHHHHHHhhcCccHHHHHHHHHHhhccCC--CCHHHHHHHHHHcCCch---hhhHH-HHHhccCceeccCCeEE
Q 041805 72 HPSILEVLKISYDGLDNKEKNIFLDVACFFQG--EDVNLVMKFLNASGFYP---KLGRS-VLVDKSLIVKSNNNKIT 142 (215)
Q Consensus 72 ~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~--~~~~~l~~~w~~~g~~~---~~~l~-~L~~~~Ll~~~~~~~~~ 142 (215)
+..++..++...+..+..+.....+ .+...+...+ |... ...++ .+++.+++...+.|+..
T Consensus 238 -------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l---gi~~~tl~~~l~~~~i~~~li~~~~~g~~~ 304 (324)
T 1hqc_A 238 -------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATAL---SEDPGTLEEVHEPYLIRQGLLKRTPRGRVP 304 (324)
T ss_dssp -------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT---TSCHHHHHHHTHHHHHHTTSEEEETTEEEE
T ss_pred -------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh---CCCHHHHHHHHhHHHHHhcchhcCCcccee
Confidence 2334566777777777776644332 3555555543 3322 12233 37889999876666533
No 65
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=66.39 E-value=4.2 Score=35.73 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=15.3
Q ss_pred CCCCceEEEcCCCCccccccccccC
Q 041805 189 SAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+++|++|+|++|+|+.+|.++..+
T Consensus 276 ~l~~L~~L~l~~n~l~~lp~~l~~l 300 (606)
T 3t6q_A 276 CFSGLQELDLTATHLSELPSGLVGL 300 (606)
T ss_dssp TCTTCSEEECTTSCCSCCCSSCCSC
T ss_pred cccCCCEEeccCCccCCCChhhccc
Confidence 4566666666666666666655544
No 66
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=66.18 E-value=3.2 Score=37.14 Aligned_cols=23 Identities=13% Similarity=0.012 Sum_probs=10.7
Q ss_pred CCCceEEEcCCCCcccccccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWDGMKV 212 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~~~~~ 212 (215)
+.+|++|+|++|+|..+|.++..
T Consensus 512 l~~L~~L~Ls~N~l~~ip~~~~~ 534 (636)
T 4eco_A 512 LPYLVGIDLSYNSFSKFPTQPLN 534 (636)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGG
T ss_pred CCCcCEEECCCCCCCCcChhhhc
Confidence 34444444444444444444433
No 67
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=65.93 E-value=5.1 Score=29.85 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=18.0
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|..++.+
T Consensus 90 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 118 (208)
T 2o6s_A 90 SLPNGVFDKLTQLKELALNTNQLQSLPDG 118 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCHhHhcCccCCCEEEcCCCcCcccCHh
Confidence 44543 3 567777777777777777654
No 68
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=65.81 E-value=0.46 Score=35.72 Aligned_cols=27 Identities=11% Similarity=0.202 Sum_probs=18.1
Q ss_pred CCCCCC-CCCCceEEEcCCCCcccccccc
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
.+| .+ .+++|++|+|++|+|+.+|...
T Consensus 62 ~l~-~~~~l~~L~~L~l~~n~l~~l~~~~ 89 (198)
T 1ds9_A 62 KIS-SLSGMENLRILSLGRNLIKKIENLD 89 (198)
T ss_dssp CCC-CHHHHTTCCEEEEEEEEECSCSSHH
T ss_pred ccc-ccccCCCCCEEECCCCCcccccchh
Confidence 556 33 5677777777777777776543
No 69
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=65.71 E-value=3.3 Score=35.69 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=18.3
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
++|..+ .+.+|++|+|++|+|+.+|.+
T Consensus 435 ~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 435 SIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred ccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 566544 566777777777777777765
No 70
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=65.71 E-value=5 Score=30.99 Aligned_cols=26 Identities=27% Similarity=0.358 Sum_probs=18.4
Q ss_pred CCCCC-C-CCCCceEEEcCCCCcccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.. | .+.+|++|+|++|+|+.++.
T Consensus 121 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 148 (251)
T 3m19_A 121 SLPSGVFDRLTKLKELRLNTNQLQSIPA 148 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CcChhHhccCCcccEEECcCCcCCccCH
Confidence 55554 3 46788888888888877775
No 71
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=65.68 E-value=4.8 Score=32.40 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=18.4
Q ss_pred CCCC-CCCCceEEEcCCCCcccccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
|..| .+++|++|+|++|+|+.+|.+.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~ 119 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKM 119 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhh
Confidence 5555 5677888888887777777554
No 72
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=65.23 E-value=3.1 Score=29.21 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=11.7
Q ss_pred CCCCceEEEcCCCCcccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+++|++|+|++|+|..++.
T Consensus 111 ~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 111 KLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp GCTTCCEEECTTCGGGGSTT
T ss_pred hCCCCCEEeCcCCcccchHH
Confidence 44566666666666665543
No 73
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=65.00 E-value=3.4 Score=33.72 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=11.9
Q ss_pred CCCCceEEEcCCCCcccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+++|++|+|++|+|+.++.
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~ 141 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGE 141 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCS
T ss_pred CCccCCEEECCCCCCcccCc
Confidence 44566666666666666554
No 74
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=64.97 E-value=2.7 Score=36.23 Aligned_cols=31 Identities=6% Similarity=0.199 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceEEEcCCCCccc--cccccccCC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQ--LWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~--L~~~~~~l~ 214 (215)
.+|.. .+.+|++|+|++|+|.. +|..++.|+
T Consensus 83 ~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~ 115 (520)
T 2z7x_B 83 KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMS 115 (520)
T ss_dssp EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCT
T ss_pred ecCcc-ccCCccEEeccCCccccccchhhhccCC
Confidence 56665 66777777777777765 345555544
No 75
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=64.83 E-value=3.2 Score=38.04 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.2
Q ss_pred CCCCCC-CCCCceEEEcCCCCcc-ccccccccCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIE-QLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~-~L~~~~~~l~ 214 (215)
.+|..+ .++.|++|+|++|+|. .+|.+++.|+
T Consensus 647 ~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 647 YIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred cCCHHHhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 677776 6788888888888887 7777776664
No 76
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=64.52 E-value=4.6 Score=34.00 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=10.1
Q ss_pred CCCC-CCCCceEEEcCCCCcc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIE 204 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~ 204 (215)
|..| .+++|++|+|++|+|.
T Consensus 96 ~~~~~~l~~L~~L~L~~n~l~ 116 (455)
T 3v47_A 96 TGAFNGLANLEVLTLTQCNLD 116 (455)
T ss_dssp TTTTTTCTTCCEEECTTSCCB
T ss_pred hhhccCcccCCEEeCCCCCCC
Confidence 3344 3455555555555554
No 77
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=64.32 E-value=5.7 Score=29.57 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=21.4
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|..++.+
T Consensus 114 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 142 (208)
T 2o6s_A 114 SLPDGVFDKLTQLKDLRLYQNQLKSVPDG 142 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCHhHhccCCcCCEEECCCCccceeCHH
Confidence 55654 4 578999999999999888865
No 78
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=64.19 E-value=3.9 Score=35.74 Aligned_cols=30 Identities=10% Similarity=0.109 Sum_probs=17.1
Q ss_pred CCCCCCCCCCceEEEcCCCCccccc--cccccC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLW--DGMKVC 213 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~--~~~~~l 213 (215)
++|.. .+.+|++|+|++|+|..++ ..+++|
T Consensus 114 ~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l 145 (562)
T 3a79_B 114 NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNL 145 (562)
T ss_dssp EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGC
T ss_pred ccCcc-ccccCCEEECCCCCccccCchHhhccc
Confidence 55555 5566666666666666554 344443
No 79
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=64.14 E-value=2.5 Score=39.80 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=28.3
Q ss_pred CCCCCC-CCCCceEEEcCCCCccc------------------cccccc--cCCC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQ------------------LWDGMK--VCET 215 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~------------------L~~~~~--~l~~ 215 (215)
.+|+.| ++++|++|+|++|+|.. +|.++. +|++
T Consensus 439 ~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~ 492 (876)
T 4ecn_A 439 FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492 (876)
T ss_dssp EECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred chhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCC
Confidence 489888 78999999999999998 998877 6653
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=63.77 E-value=4.4 Score=37.54 Aligned_cols=20 Identities=15% Similarity=0.169 Sum_probs=9.6
Q ss_pred CCCC-CCCCceEEEcCCCCcc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIE 204 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~ 204 (215)
|..| .+.+|++|+|++|+|.
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~ 110 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLS 110 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCS
T ss_pred HhHccCCcccCEeeCcCCCCC
Confidence 4444 3445555555555544
No 81
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=63.26 E-value=5 Score=32.37 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=16.5
Q ss_pred CCCC-CCCCceEEEcCCCCcccccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
|..| .+.+|++|+|++|+|..+|.+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~ 121 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNL 121 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSC
T ss_pred HhHhhCcCCCCEEECCCCcCCccCccc
Confidence 4444 4567777777777777666544
No 82
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=62.62 E-value=6.1 Score=30.86 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=15.8
Q ss_pred CCCCC-C-CCCCceEEEcCCCCcccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.. | .+.+|++|+|++|+|..++.
T Consensus 147 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 147 SLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCHhHccCCcccceeEecCCcCcEeCh
Confidence 44443 3 45667777777777766654
No 83
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=62.55 E-value=3 Score=36.09 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=16.6
Q ss_pred CCCCCC-CCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|+.| .+.+|++|+|++|+|..+|..+..+
T Consensus 205 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l 236 (487)
T 3oja_A 205 FMGPEFQSAAGVTWISLRNNKLVLIEKALRFS 236 (487)
T ss_dssp EECGGGGGGTTCSEEECTTSCCCEECTTCCCC
T ss_pred CCCHhHcCCCCccEEEecCCcCcccchhhccC
Confidence 344444 4455666666666666665554443
No 84
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=62.17 E-value=5.9 Score=34.76 Aligned_cols=32 Identities=22% Similarity=0.071 Sum_probs=21.9
Q ss_pred CCC-CCC-CCCCceEEEcCCCCcc--ccccccccCC
Q 041805 183 SLP-SNI-SAKKLVFLEMPNSSIE--QLWDGMKVCE 214 (215)
Q Consensus 183 ~lP-~~~-~~~~L~~L~L~~s~i~--~L~~~~~~l~ 214 (215)
.+| ..| .+.+|++|+|++|+|. .+|.++++|+
T Consensus 118 ~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 153 (606)
T 3vq2_A 118 SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLT 153 (606)
T ss_dssp CSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCT
T ss_pred cccccccCCCCCCCEEeCCCCcccceechHhHhhcC
Confidence 444 334 6778888888888887 4677776654
No 85
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=62.14 E-value=56 Score=26.08 Aligned_cols=135 Identities=13% Similarity=0.065 Sum_probs=72.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhccc------CCC---CHHHHHHHHHHHhcCC
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFL------YER---EKEVWESAINKLQRIL 71 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L------~~k---~~~~w~~~l~~l~~~~ 71 (215)
+++++.++...++.+.+-... ..--.+....+++.+.|.|-.+..+...+ .+. +......++
T Consensus 181 l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~------- 251 (338)
T 3pfi_A 181 LEFYKDSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEAL------- 251 (338)
T ss_dssp CCCCCHHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH-------
T ss_pred CCCcCHHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHH-------
Confidence 467888888888887762211 11123456677788888885444322211 010 222222222
Q ss_pred chhHHHHHHHhhcCccHHHHHHHHHHhhccCCC--CHHHHHHHHHHcCCchhhhHH-HHHhccCceeccCCeEEecHHHH
Q 041805 72 HPSILEVLKISYDGLDNKEKNIFLDVACFFQGE--DVNLVMKFLNASGFYPKLGRS-VLVDKSLIVKSNNNKITMHDLLQ 148 (215)
Q Consensus 72 ~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~~--~~~~l~~~w~~~g~~~~~~l~-~L~~~~Ll~~~~~~~~~mHdlvr 148 (215)
..+..+...+....++.+..++-. .+. +...+.....-..-.....++ .|++.+++.....|++....-+.
T Consensus 252 -----~~~~~~~~~l~~~e~~~l~~l~~~-~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~t~~~~~ 325 (338)
T 3pfi_A 252 -----NSLGVNELGFDAMDLRYLELLTAA-KQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYS 325 (338)
T ss_dssp -----HHHTCCTTCCCHHHHHHHHHHHHS-CSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred -----HHhCCcccCCCHHHHHHHHHHHHh-cCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccccHHHHH
Confidence 223344455666556666666655 322 555555433211111133455 88999999988788766655444
Q ss_pred HH
Q 041805 149 EL 150 (215)
Q Consensus 149 ~~ 150 (215)
.+
T Consensus 326 ~~ 327 (338)
T 3pfi_A 326 AL 327 (338)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 86
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=61.92 E-value=5.5 Score=32.75 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=8.4
Q ss_pred CCCceEEEcCCCCccccc
Q 041805 190 AKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~ 207 (215)
+.+|++|||++|+|+.++
T Consensus 162 l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 162 LPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CTTCCEEECCSSCCCCCC
T ss_pred CCcCCEEECCCCCCCccC
Confidence 344444444444444444
No 87
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=61.79 E-value=3.7 Score=30.52 Aligned_cols=30 Identities=10% Similarity=0.124 Sum_probs=19.3
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|....+++|++|+|++|+|..++ ++..+
T Consensus 151 ~~~~l~~l~~L~~L~l~~n~i~~~~-~l~~l 180 (197)
T 4ezg_A 151 DIMPLKTLPELKSLNIQFDGVHDYR-GIEDF 180 (197)
T ss_dssp CCGGGGGCSSCCEEECTTBCCCCCT-TGGGC
T ss_pred ccHhhcCCCCCCEEECCCCCCcChH-HhccC
Confidence 4453335677888888888887765 44444
No 88
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=60.92 E-value=4.7 Score=37.92 Aligned_cols=23 Identities=4% Similarity=-0.087 Sum_probs=10.9
Q ss_pred CCCceEEEcCCCCcccccccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWDGMKV 212 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~~~~~ 212 (215)
+.+|+.|+|++|+|..+|.++..
T Consensus 752 l~~L~~L~Ls~N~L~~lp~~l~~ 774 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSSFPTQPLN 774 (876)
T ss_dssp CTTCCEEECCSSCCSSCCCGGGG
T ss_pred CCCcCEEEeCCCCCCccchhhhc
Confidence 34455555555555444444433
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=60.91 E-value=6.1 Score=32.44 Aligned_cols=18 Identities=22% Similarity=0.194 Sum_probs=11.5
Q ss_pred CCCCceEEEcCCCCcccc
Q 041805 189 SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L 206 (215)
.+.+|++|+|++|+|..+
T Consensus 110 ~l~~L~~L~L~~N~i~~~ 127 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVV 127 (361)
T ss_dssp TCTTCCEEECCSSCCCEE
T ss_pred CCcCCCEEECCCCcccEE
Confidence 456666666666666655
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=60.71 E-value=4.2 Score=30.18 Aligned_cols=18 Identities=11% Similarity=0.250 Sum_probs=9.1
Q ss_pred CCCceEEEcCCCC-ccccc
Q 041805 190 AKKLVFLEMPNSS-IEQLW 207 (215)
Q Consensus 190 ~~~L~~L~L~~s~-i~~L~ 207 (215)
+++|++|+|++|+ |..++
T Consensus 135 l~~L~~L~L~~n~~i~~~~ 153 (197)
T 4ezg_A 135 LPKVNSIDLSYNGAITDIM 153 (197)
T ss_dssp CSSCCEEECCSCTBCCCCG
T ss_pred CCCCCEEEccCCCCccccH
Confidence 4455555555554 44443
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=60.39 E-value=7.9 Score=29.82 Aligned_cols=26 Identities=15% Similarity=0.327 Sum_probs=21.2
Q ss_pred CCCC-CC-CCCCceEEEcCCCCcccccc
Q 041805 183 SLPS-NI-SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~-~~-~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|. .| .+.+|++|+|++|+|..++.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 172 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPH 172 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred ccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence 6666 35 67899999999999998875
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=60.26 E-value=6.8 Score=33.16 Aligned_cols=26 Identities=31% Similarity=0.311 Sum_probs=16.1
Q ss_pred CCCCC-C-CCCCceEEEcCCCCcccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.. | .+.+|++|+|++|+|+.++.
T Consensus 137 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 164 (452)
T 3zyi_A 137 VIPSGAFEYLSKLRELWLRNNPIESIPS 164 (452)
T ss_dssp BCCTTTSSSCTTCCEEECCSCCCCEECT
T ss_pred ccChhhhcccCCCCEEECCCCCcceeCH
Confidence 44443 3 45677777777777766664
No 93
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=59.82 E-value=6.5 Score=34.76 Aligned_cols=19 Identities=32% Similarity=0.471 Sum_probs=10.3
Q ss_pred CCCCceEEEcCCCCccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~ 207 (215)
.+.+|++|+|++|+|..++
T Consensus 145 ~l~~L~~L~Ls~N~l~~~~ 163 (597)
T 3oja_B 145 NTPKLTTLSMSNNNLERIE 163 (597)
T ss_dssp TCTTCCEEECCSSCCCBCC
T ss_pred cCCCCCEEEeeCCcCCCCC
Confidence 4455555555555555544
No 94
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=59.47 E-value=7.2 Score=32.73 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=16.7
Q ss_pred CCCC-CCCCceEEEcCCCCccccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
|..| .+.+|++|+|++|+|+.++.+
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~ 389 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDG 389 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred hhhccccccccEEECCCCccccCCHh
Confidence 5555 557777777777777776654
No 95
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=59.12 E-value=6.2 Score=34.62 Aligned_cols=29 Identities=10% Similarity=0.056 Sum_probs=17.3
Q ss_pred CCCC-CCCCceEEEcCCCCcccc-ccccccC
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQL-WDGMKVC 213 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L-~~~~~~l 213 (215)
|..| .+++|++|+|++|+|..+ |..+..+
T Consensus 74 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 104 (606)
T 3t6q_A 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGP 104 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCSEECTTTTSSC
T ss_pred hhhccCccccCeeeCCCCcccccChhhhccc
Confidence 5555 566777777777777665 3344333
No 96
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=59.04 E-value=6.3 Score=35.45 Aligned_cols=30 Identities=23% Similarity=0.098 Sum_probs=22.9
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
++|. .+++|++|+|++|+|+.+|.+..+|+
T Consensus 75 ~lp~--~l~~L~~L~Ls~N~l~~lp~~l~~L~ 104 (622)
T 3g06_A 75 SLPA--LPPELRTLEVSGNQLTSLPVLPPGLL 104 (622)
T ss_dssp CCCC--CCTTCCEEEECSCCCSCCCCCCTTCC
T ss_pred CCCC--cCCCCCEEEcCCCcCCcCCCCCCCCC
Confidence 6777 46888888888888888887665553
No 97
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=58.91 E-value=7.4 Score=33.03 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=10.5
Q ss_pred CCCCceEEEcCCCCcccc
Q 041805 189 SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L 206 (215)
.+.+|++|+|++|+|..+
T Consensus 102 ~l~~L~~L~Ls~n~i~~~ 119 (477)
T 2id5_A 102 GLSNLTKLDISENKIVIL 119 (477)
T ss_dssp TCTTCCEEECTTSCCCEE
T ss_pred CCCCCCEEECCCCccccC
Confidence 455666666666665554
No 98
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=58.81 E-value=6.7 Score=33.31 Aligned_cols=25 Identities=16% Similarity=0.204 Sum_probs=20.0
Q ss_pred CCCC-CCCCceEEEcCCCCccccccc
Q 041805 185 PSNI-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
|..| .+.+|++|+|++|+|..++.+
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~ 98 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLG 98 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcc
Confidence 5666 678889999999888888865
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=58.15 E-value=6.8 Score=34.88 Aligned_cols=21 Identities=10% Similarity=0.301 Sum_probs=13.8
Q ss_pred eEEEcCCCCccccccccccCC
Q 041805 194 VFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 194 ~~L~L~~s~i~~L~~~~~~l~ 214 (215)
++|+|++|+|+.+|.++..|+
T Consensus 210 ~~L~Ls~N~l~~lp~~l~~l~ 230 (571)
T 3cvr_A 210 IFFRCRENRITHIPENILSLD 230 (571)
T ss_dssp EEEECCSSCCCCCCGGGGGSC
T ss_pred eEEecCCCcceecCHHHhcCC
Confidence 777777777777776665543
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=57.90 E-value=6 Score=34.26 Aligned_cols=17 Identities=35% Similarity=0.731 Sum_probs=7.6
Q ss_pred CCCceEEEcCCCCcccc
Q 041805 190 AKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L 206 (215)
+.+|++|+|++|+|..+
T Consensus 469 l~~L~~L~l~~n~l~~~ 485 (570)
T 2z63_A 469 LRNLTFLDLSQCQLEQL 485 (570)
T ss_dssp CTTCCEEECTTSCCCEE
T ss_pred ccCCCEEECCCCccccC
Confidence 34444444444444444
No 101
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=57.46 E-value=7.3 Score=31.11 Aligned_cols=23 Identities=17% Similarity=0.489 Sum_probs=10.9
Q ss_pred CCCCCCCCCCceEEEcCCCCcccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L 206 (215)
++|..+. ++|++|+|++|+|+.+
T Consensus 265 ~lp~~~~-~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 265 QVPKGLP-AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp SCCSCCC-SCCSCEECCSCCCCSC
T ss_pred chhhhhc-CCCCEEECCCCcCCCC
Confidence 3444332 4555555555555544
No 102
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=56.81 E-value=8.2 Score=30.22 Aligned_cols=29 Identities=7% Similarity=0.101 Sum_probs=17.7
Q ss_pred CCCC-CCCCceEEEcCCCC-cccc-ccccccC
Q 041805 185 PSNI-SAKKLVFLEMPNSS-IEQL-WDGMKVC 213 (215)
Q Consensus 185 P~~~-~~~~L~~L~L~~s~-i~~L-~~~~~~l 213 (215)
|..| .+++|++|+|++|+ +..+ +..+..+
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l 104 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGL 104 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCC
Confidence 4445 46777777777776 7666 4444433
No 103
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=56.70 E-value=5 Score=34.64 Aligned_cols=32 Identities=9% Similarity=0.183 Sum_probs=24.3
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccCC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVCE 214 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l~ 214 (215)
.+|....+.+|++|+|++|+|..+|.++..++
T Consensus 183 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 214 (487)
T 3oja_A 183 DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAA 214 (487)
T ss_dssp EEECCCCCTTCCEEECCSSCCCEECGGGGGGT
T ss_pred cccccccCCCCCEEECCCCCCCCCCHhHcCCC
Confidence 45555567889999999999988887766553
No 104
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=56.28 E-value=9.1 Score=29.90 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=13.3
Q ss_pred CCCCceEEEcCCCCccccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+.+|++|+|++|+|..++.+
T Consensus 155 ~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 155 KLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp TCTTCCEEECCSSCCCCCCTT
T ss_pred cCccCCEEECCCCCcCccCHH
Confidence 456666777776666666543
No 105
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=55.83 E-value=9.7 Score=29.78 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=18.1
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|+.++.+
T Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 143 ALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred ccCHhHhccCCCccEEECCCCcccccCHH
Confidence 44443 4 567788888888877777653
No 106
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=55.82 E-value=8.8 Score=32.30 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=12.6
Q ss_pred CCCCCCCCCCceEEEcCCCCcccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L 206 (215)
.+|....+.+|++|+|++|+|..+
T Consensus 199 ~~~~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 199 EIPNLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCTTCSSCCEEECTTSCCCEE
T ss_pred cccccCCCcccCEEECCCCccCcc
Confidence 444433455555555555555554
No 107
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.72 E-value=79 Score=25.44 Aligned_cols=135 Identities=14% Similarity=0.160 Sum_probs=70.1
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHhhhccc------CC---CCHHHHHHHHHHHhcCC
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKVLGCFL------YE---REKEVWESAINKLQRIL 71 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ig~~L------~~---k~~~~w~~~l~~l~~~~ 71 (215)
+++.+.++-.+++.+.+-.... .-..+.+..|++.+.|-|-.+..+-..+ .+ -+....+.+++.+.
T Consensus 177 Ld~~~~~~l~~iL~~~~~~~~~--~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~--- 251 (334)
T 1in4_A 177 LDFYTVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN--- 251 (334)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHHcCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC---
Confidence 4788889999999887621111 1224567888899999886443222111 11 13333344443322
Q ss_pred chhHHHHHHHhhcCccHHHHHHHHHHhhccCC-C-CHHHHHHHHHHcCCch-hhhHH-HHHhccCceeccCCeEEecHHH
Q 041805 72 HPSILEVLKISYDGLDNKEKNIFLDVACFFQG-E-DVNLVMKFLNASGFYP-KLGRS-VLVDKSLIVKSNNNKITMHDLL 147 (215)
Q Consensus 72 ~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp~~-~-~~~~l~~~w~~~g~~~-~~~l~-~L~~~~Ll~~~~~~~~~mHdlv 147 (215)
.....++...+..+..++-...+ . ..+.+..... ++... +..++ .|...++++....|++....-.
T Consensus 252 ---------~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~~~~ 321 (334)
T 1in4_A 252 ---------IDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLG-VEADTLSEVYEPYLLQAGFLARTPRGRIVTEKAY 321 (334)
T ss_dssp ---------CCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHT-SCHHHHHHHTHHHHHHTTSEEEETTEEEECHHHH
T ss_pred ---------CCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhC-CCcchHHHHHHHHHHHcCCeecccccHHhhHHHH
Confidence 12234455444444444333322 2 4444443322 22111 22222 7889999999888887665544
Q ss_pred HHH
Q 041805 148 QEL 150 (215)
Q Consensus 148 r~~ 150 (215)
+.+
T Consensus 322 ~~~ 324 (334)
T 1in4_A 322 KHL 324 (334)
T ss_dssp HHT
T ss_pred HHh
Confidence 443
No 108
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=55.65 E-value=9.1 Score=29.79 Aligned_cols=24 Identities=21% Similarity=0.537 Sum_probs=14.1
Q ss_pred CCCCC-CCCCceEEEcCCCCccccc
Q 041805 184 LPSNI-SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 184 lP~~~-~~~~L~~L~L~~s~i~~L~ 207 (215)
+|..| .+.+|++|+|++|+|+.++
T Consensus 141 l~~~~~~l~~L~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 141 LPEYFSNLTNLEHLDLSSNKIQSIY 165 (276)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCEEC
T ss_pred CchhhccCCCCCEEECCCCCCCcCC
Confidence 45555 4566666666666666554
No 109
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=55.06 E-value=6.1 Score=34.12 Aligned_cols=17 Identities=12% Similarity=0.292 Sum_probs=10.0
Q ss_pred CCCCceEEEcCCCCccc
Q 041805 189 SAKKLVFLEMPNSSIEQ 205 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~ 205 (215)
.+++|++|+|++|+|..
T Consensus 96 ~l~~L~~L~Ls~n~l~~ 112 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQT 112 (549)
T ss_dssp TCTTCCEEECTTCCCSS
T ss_pred cCCCCcEEECCCCcccc
Confidence 45566666666666653
No 110
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=54.64 E-value=10 Score=32.43 Aligned_cols=31 Identities=23% Similarity=0.235 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|+-..+++|++|+|++|+|+.+|.....|
T Consensus 145 ~lp~~~~l~~L~~L~l~~N~l~~lp~~~~~L 175 (454)
T 1jl5_A 145 KLPELQNSSFLKIIDVDNNSLKKLPDLPPSL 175 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSCCSCCCCCCTTC
T ss_pred CCcccCCCCCCCEEECCCCcCcccCCCcccc
Confidence 5664226677777777777777776655444
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=54.58 E-value=7.3 Score=30.50 Aligned_cols=26 Identities=19% Similarity=0.157 Sum_probs=17.5
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.-..+++|++|+|++|+|+.++.
T Consensus 77 ~~~~l~~l~~L~~L~L~~N~l~~l~~ 102 (263)
T 1xeu_A 77 DLSPLKDLTKLEELSVNRNRLKNLNG 102 (263)
T ss_dssp CCGGGTTCSSCCEEECCSSCCSCCTT
T ss_pred CChhhccCCCCCEEECCCCccCCcCc
Confidence 45552366778888888888777653
No 112
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=54.45 E-value=11 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.311 Sum_probs=17.4
Q ss_pred CCCCCCceEEEcCCCCcccccccc
Q 041805 187 NISAKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 187 ~~~~~~L~~L~L~~s~i~~L~~~~ 210 (215)
.+...+|++|+|++|+|+.++.+.
T Consensus 196 ~~~~~~L~~L~L~~n~l~~~~~~~ 219 (276)
T 2z62_A 196 AFKEIRLKELALDTNQLKSVPDGI 219 (276)
T ss_dssp SSCSCCEEEEECCSSCCSCCCTTT
T ss_pred ccCCCcccEEECCCCceeecCHhH
Confidence 345567888888888888887653
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=54.01 E-value=7.8 Score=30.33 Aligned_cols=18 Identities=22% Similarity=0.274 Sum_probs=8.3
Q ss_pred CCCCceEEEcCCCCcccc
Q 041805 189 SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L 206 (215)
.+++|++|+|++|+|..+
T Consensus 148 ~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 148 FLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp GCTTCCEEECTTSCCCBC
T ss_pred cCCCCCEEECCCCcCcch
Confidence 334444444444444444
No 114
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=53.06 E-value=11 Score=29.42 Aligned_cols=27 Identities=26% Similarity=0.565 Sum_probs=18.0
Q ss_pred CCCCC-C-CCCCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+.+|++|+|++|+|..++.+
T Consensus 123 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 123 SLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 44443 3 567788888888877777654
No 115
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=52.64 E-value=6.8 Score=32.29 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=10.8
Q ss_pred CCCceEEEcCCCCcccccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~~~ 210 (215)
+.+|++|+|++|+|..+|.+.
T Consensus 294 l~~L~~L~L~~n~l~~~~~~~ 314 (390)
T 3o6n_A 294 IPTLKVLDLSHNHLLHVERNQ 314 (390)
T ss_dssp CTTCCEEECCSSCCCCCGGGH
T ss_pred CCCCCEEECCCCcceecCccc
Confidence 345555555555555555433
No 116
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=52.58 E-value=6.9 Score=31.94 Aligned_cols=27 Identities=7% Similarity=0.100 Sum_probs=20.4
Q ss_pred CCCCC-C-CCCCceEEEcCCCCcc-ccccc
Q 041805 183 SLPSN-I-SAKKLVFLEMPNSSIE-QLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~~~L~~L~L~~s~i~-~L~~~ 209 (215)
++|+. | .+.+|++|+|++|+|. .++.+
T Consensus 44 ~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~ 73 (350)
T 4ay9_X 44 VIQKGAFSGFGDLEKIEISQNDVLEVIEAD 73 (350)
T ss_dssp EECTTSSTTCTTCCEEEEECCTTCCEECTT
T ss_pred CcCHHHHcCCCCCCEEECcCCCCCCccChh
Confidence 78864 5 6789999999999974 45543
No 117
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=52.52 E-value=8.2 Score=30.90 Aligned_cols=25 Identities=16% Similarity=0.238 Sum_probs=17.6
Q ss_pred CCCCCCCCCCceEEEcCCCCccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~ 207 (215)
.+|.-..+++|++|+|++|+|+.++
T Consensus 77 ~~~~~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 77 DLAPLKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp CCGGGTTCCSCCEEECCSCCCSCCG
T ss_pred CChhHccCCCCCEEEccCCcCCCch
Confidence 5555336678888888888887765
No 118
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=52.24 E-value=8.7 Score=29.23 Aligned_cols=27 Identities=11% Similarity=0.211 Sum_probs=18.3
Q ss_pred CCCCC-C-CC-CCceEEEcCCCCccccccc
Q 041805 183 SLPSN-I-SA-KKLVFLEMPNSSIEQLWDG 209 (215)
Q Consensus 183 ~lP~~-~-~~-~~L~~L~L~~s~i~~L~~~ 209 (215)
.+|.. | .+ .+|++|+|++|+|+.+|.+
T Consensus 194 ~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~ 223 (239)
T 2xwt_C 194 VIDKDAFGGVYSGPSLLDVSQTSVTALPSK 223 (239)
T ss_dssp EECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred cCCHHHhhccccCCcEEECCCCccccCChh
Confidence 44433 4 45 6788888888888877754
No 119
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=51.52 E-value=4.6 Score=32.30 Aligned_cols=23 Identities=17% Similarity=0.330 Sum_probs=15.8
Q ss_pred CCCCC-CCCCceEEEcCCCCcccc
Q 041805 184 LPSNI-SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 184 lP~~~-~~~~L~~L~L~~s~i~~L 206 (215)
+|..+ .+.+|++|+|++|+|..+
T Consensus 188 l~~~~~~l~~L~~L~Ls~N~i~~~ 211 (267)
T 3rw6_A 188 MSSIVQKAPNLKILNLSGNELKSE 211 (267)
T ss_dssp GTTHHHHSTTCCEEECTTSCCCSG
T ss_pred chhHHhhCCCCCEEECCCCccCCc
Confidence 34433 567788888888888766
No 120
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=51.22 E-value=9.2 Score=32.97 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=14.3
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~ 208 (215)
++|....+.+|++|+|++|+|+.++.
T Consensus 465 ~ip~~~~l~~L~~L~Ls~N~l~~~~~ 490 (549)
T 2z81_A 465 TLPDASLFPVLLVMKISRNQLKSVPD 490 (549)
T ss_dssp SCCCGGGCTTCCEEECCSSCCCCCCT
T ss_pred cCCCcccCccCCEEecCCCccCCcCH
Confidence 45544345556666666666655543
No 121
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=51.15 E-value=11 Score=32.53 Aligned_cols=32 Identities=25% Similarity=0.192 Sum_probs=21.9
Q ss_pred CCCC-CC-CCCCceEEEcCCCCccc--cccccccCC
Q 041805 183 SLPS-NI-SAKKLVFLEMPNSSIEQ--LWDGMKVCE 214 (215)
Q Consensus 183 ~lP~-~~-~~~~L~~L~L~~s~i~~--L~~~~~~l~ 214 (215)
.+|. .| .+++|++|+|++|+|.. +|.++++|+
T Consensus 114 ~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~ 149 (570)
T 2z63_A 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149 (570)
T ss_dssp CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCT
T ss_pred cCCCccccccccccEEecCCCccceecChhhhcccC
Confidence 4444 24 66788888888888875 677766654
No 122
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=51.04 E-value=5.5 Score=30.38 Aligned_cols=14 Identities=14% Similarity=0.237 Sum_probs=7.7
Q ss_pred EEEcCCC-Ccccccc
Q 041805 195 FLEMPNS-SIEQLWD 208 (215)
Q Consensus 195 ~L~L~~s-~i~~L~~ 208 (215)
+|+|++| +|+.++.
T Consensus 134 ~L~l~~N~~l~~i~~ 148 (239)
T 2xwt_C 134 ILEITDNPYMTSIPV 148 (239)
T ss_dssp EEEEESCTTCCEECT
T ss_pred EEECCCCcchhhcCc
Confidence 5555555 5555543
No 123
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=50.26 E-value=9 Score=32.55 Aligned_cols=26 Identities=23% Similarity=0.212 Sum_probs=14.1
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.-..+++|++|+|++|+|..++.
T Consensus 82 ~~~~~~~l~~L~~L~l~~n~l~~~~~ 107 (466)
T 1o6v_A 82 DITPLKNLTKLVDILMNNNQIADITP 107 (466)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred CchhhhccccCCEEECCCCccccChh
Confidence 34432245666666666666665553
No 124
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=50.09 E-value=9.4 Score=30.41 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=21.0
Q ss_pred CCCC-CC---CCceEEEcCCCCcccccccc
Q 041805 185 PSNI-SA---KKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 185 P~~~-~~---~~L~~L~L~~s~i~~L~~~~ 210 (215)
|..+ .+ ++|++|+|++|+|+.+|.++
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~ 270 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFAGLEQVPKGL 270 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSSCCCSCCSCC
T ss_pred hhhHHhccCcCcCCEEECCCCCCCchhhhh
Confidence 6555 33 69999999999999998865
No 125
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=49.97 E-value=12 Score=29.92 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.0
Q ss_pred CCCCceEEEcCCCCccccccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWDGMK 211 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~~~~ 211 (215)
.+.+|++|+|++|+|+.+|.++.
T Consensus 251 ~l~~L~~L~Ls~N~l~~ip~~~~ 273 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLKQVPKGLP 273 (312)
T ss_dssp CCTTCCEEECTTSCCSSCCSSCC
T ss_pred hcCCCCEEECCCCccChhhhhcc
Confidence 57899999999999999988764
No 126
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.96 E-value=29 Score=27.32 Aligned_cols=47 Identities=13% Similarity=-0.013 Sum_probs=31.8
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchh-HHhhh
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLA-LKVLG 49 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLa-l~~ig 49 (215)
+.|++.++..+++...+....... -.+....+++.|+|.|.. +..+.
T Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~ 210 (323)
T 1sxj_B 163 YSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQ 210 (323)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468999999999998763222111 134567899999999954 44443
No 127
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=49.09 E-value=13 Score=31.47 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=12.8
Q ss_pred CCCCCCCCCCceEEEcCCCCcccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L 206 (215)
.+|....+.+|++|+|++|+|..+
T Consensus 210 ~~~~~~~l~~L~~L~Ls~N~l~~~ 233 (452)
T 3zyi_A 210 DMPNLTPLVGLEELEMSGNHFPEI 233 (452)
T ss_dssp SCCCCTTCTTCCEEECTTSCCSEE
T ss_pred ccccccccccccEEECcCCcCccc
Confidence 444433455556666666555554
No 128
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=48.79 E-value=12 Score=29.53 Aligned_cols=30 Identities=27% Similarity=0.481 Sum_probs=21.1
Q ss_pred CCCCC-CCCCceEEEcCCCCcccc-ccccccC
Q 041805 184 LPSNI-SAKKLVFLEMPNSSIEQL-WDGMKVC 213 (215)
Q Consensus 184 lP~~~-~~~~L~~L~L~~s~i~~L-~~~~~~l 213 (215)
+|..| .+++|++|+|++|+|..+ +..++.+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 198 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 198 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCC
Confidence 56666 568888888888888877 4444443
No 129
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=48.44 E-value=14 Score=32.93 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=11.4
Q ss_pred CCCCceEEEcCCCCccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~ 207 (215)
.+++|++|+|++|++...+
T Consensus 119 ~l~~L~~L~Ls~n~l~~~~ 137 (680)
T 1ziw_A 119 KQKNLITLDLSHNGLSSTK 137 (680)
T ss_dssp TCTTCCEEECCSSCCSCCC
T ss_pred ccCCCCEEECCCCcccccC
Confidence 4566666666666665543
No 130
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=48.35 E-value=10 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceEEEcCCCCccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~ 207 (215)
.+|.-..+++|++|+|++|+|..++
T Consensus 80 ~~~~~~~l~~L~~L~L~~n~i~~~~ 104 (347)
T 4fmz_A 80 DISPLSNLVKLTNLYIGTNKITDIS 104 (347)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCG
T ss_pred cchhhhcCCcCCEEEccCCcccCch
Confidence 5555336788888888888888775
No 131
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=48.02 E-value=12 Score=31.50 Aligned_cols=20 Identities=15% Similarity=0.192 Sum_probs=14.3
Q ss_pred CCCCceEEEcCCCCcccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+.+|++|+|++|+|+.++.
T Consensus 110 ~l~~L~~L~L~~n~l~~~~~ 129 (440)
T 3zyj_A 110 GLANLNTLELFDNRLTTIPN 129 (440)
T ss_dssp TCSSCCEEECCSSCCSSCCT
T ss_pred CCccCCEEECCCCcCCeeCH
Confidence 45677777777777777765
No 132
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=47.48 E-value=15 Score=31.27 Aligned_cols=31 Identities=19% Similarity=0.043 Sum_probs=18.2
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|+-..+.+|++|+|++|+|+.+|.....|
T Consensus 229 ~lp~~~~l~~L~~L~l~~N~l~~l~~~~~~L 259 (454)
T 1jl5_A 229 ELPELQNLPFLTTIYADNNLLKTLPDLPPSL 259 (454)
T ss_dssp SCCCCTTCTTCCEEECCSSCCSSCCSCCTTC
T ss_pred cccccCCCCCCCEEECCCCcCCccccccccc
Confidence 5564335666777777777666666544333
No 133
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=46.74 E-value=12 Score=29.76 Aligned_cols=26 Identities=15% Similarity=0.230 Sum_probs=18.7
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.-..+++|++|+|++|+|+.++.
T Consensus 82 ~~~~l~~l~~L~~L~l~~n~l~~~~~ 107 (291)
T 1h6t_A 82 DIKPLANLKNLGWLFLDENKVKDLSS 107 (291)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCGGG
T ss_pred CCcccccCCCCCEEECCCCcCCCChh
Confidence 45553367888888888888887653
No 134
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=45.34 E-value=9.1 Score=33.80 Aligned_cols=21 Identities=10% Similarity=0.172 Sum_probs=10.5
Q ss_pred CCCceEEEcCCCCcccccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWDGM 210 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~~~ 210 (215)
+.+|++|+|++|+|..+|.++
T Consensus 300 l~~L~~L~Ls~N~l~~i~~~~ 320 (597)
T 3oja_B 300 IPTLKVLDLSHNHLLHVERNQ 320 (597)
T ss_dssp CTTCCEEECCSSCCCCCGGGH
T ss_pred CCCCcEEECCCCCCCccCccc
Confidence 345555555555555554443
No 135
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=44.91 E-value=17 Score=32.31 Aligned_cols=18 Identities=28% Similarity=0.761 Sum_probs=9.4
Q ss_pred CCCceEEEcCCCCccccc
Q 041805 190 AKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~ 207 (215)
+++|++|+|++|+|..+|
T Consensus 503 l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLW 520 (680)
T ss_dssp CTTCCEEECCSSCCGGGG
T ss_pred ccccCEEeCCCCCccccc
Confidence 445555555555555544
No 136
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=43.71 E-value=16 Score=32.41 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=9.4
Q ss_pred CCCceEEEcCCCCcccccc
Q 041805 190 AKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~~ 208 (215)
+.+|++|+|++|+|+.+|.
T Consensus 139 l~~L~~L~Ls~N~l~~lp~ 157 (571)
T 3cvr_A 139 PALLEYINADNNQLTMLPE 157 (571)
T ss_dssp CTTCCEEECCSSCCSCCCC
T ss_pred CccccEEeCCCCccCcCCC
Confidence 3445555555555544444
No 137
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=42.28 E-value=14 Score=29.31 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=10.5
Q ss_pred CCCCceEEEcCCCCcccc
Q 041805 189 SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L 206 (215)
.+.+|++|+|++|+|..+
T Consensus 132 ~l~~L~~L~l~~n~l~~~ 149 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI 149 (291)
T ss_dssp GCTTCCEEECCSSCCCCC
T ss_pred CCCCCCEEEccCCcCCcc
Confidence 445566666666665555
No 138
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=42.03 E-value=15 Score=29.32 Aligned_cols=19 Identities=16% Similarity=0.148 Sum_probs=11.2
Q ss_pred CCCCceEEEcCCCCccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~ 207 (215)
.+++|++|+|++|+|..++
T Consensus 127 ~l~~L~~L~l~~n~l~~~~ 145 (308)
T 1h6u_A 127 GLSNLQVLYLDLNQITNIS 145 (308)
T ss_dssp TCTTCCEEECCSSCCCCCG
T ss_pred CCCCCCEEECCCCccCcCc
Confidence 4556666666666665554
No 139
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=41.30 E-value=15 Score=29.44 Aligned_cols=26 Identities=12% Similarity=0.105 Sum_probs=15.9
Q ss_pred CCCCCCCCCCceEEEcCCCCcccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWD 208 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~ 208 (215)
.+|.-..+.+|++|+|++|+|..++.
T Consensus 102 ~~~~~~~l~~L~~L~l~~n~i~~~~~ 127 (347)
T 4fmz_A 102 DISALQNLTNLRELYLNEDNISDISP 127 (347)
T ss_dssp CCGGGTTCTTCSEEECTTSCCCCCGG
T ss_pred CchHHcCCCcCCEEECcCCcccCchh
Confidence 44433356677777777777766654
No 140
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=40.37 E-value=33 Score=24.93 Aligned_cols=45 Identities=9% Similarity=-0.099 Sum_probs=31.0
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHh
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKV 47 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ 47 (215)
++|++.++..+++.+.+....... -.+....+++.++|.|..+..
T Consensus 158 ~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~ 202 (226)
T 2chg_A 158 FKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAIN 202 (226)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 478999999999998773222111 134567788999999985543
No 141
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=38.31 E-value=19 Score=33.29 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=17.4
Q ss_pred CCCCceEEEcCCCCccccc--cccccCC
Q 041805 189 SAKKLVFLEMPNSSIEQLW--DGMKVCE 214 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~--~~~~~l~ 214 (215)
.+++|++|||++|++..+. ..+++|+
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~ 148 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLN 148 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCS
T ss_pred ccCCCCEEECCCCcccccccchhHhhCC
Confidence 5678888888888887764 3344443
No 142
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=37.93 E-value=15 Score=18.03 Aligned_cols=16 Identities=25% Similarity=0.403 Sum_probs=12.9
Q ss_pred cCCchhHHhhhcccCC
Q 041805 39 QGVPLALKVLGCFLYE 54 (215)
Q Consensus 39 ~GlPLal~~ig~~L~~ 54 (215)
.-+|||+.++++.+..
T Consensus 9 rklplavav~agv~~a 24 (28)
T 2vda_B 9 RKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCTHHHHHHHHTTCC
T ss_pred ccCchHHHHHHHHhHh
Confidence 4689999999887754
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=37.21 E-value=21 Score=26.58 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=15.9
Q ss_pred CCCCCC-CCCCceEEEcCCCCccc
Q 041805 183 SLPSNI-SAKKLVFLEMPNSSIEQ 205 (215)
Q Consensus 183 ~lP~~~-~~~~L~~L~L~~s~i~~ 205 (215)
.||..+ ..-+|+.|||++|.|..
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~Itd 75 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSCIMS 75 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCCCCG
T ss_pred cCCcccCCCceEeEEeCcCCCccH
Confidence 677765 34568888888887654
No 144
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=36.00 E-value=20 Score=30.50 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=14.0
Q ss_pred CCCCceEEEcCCCCccccc
Q 041805 189 SAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L~ 207 (215)
.+++|++|+|++|+|+.++
T Consensus 83 ~l~~L~~L~Ls~N~l~~~~ 101 (457)
T 3bz5_A 83 QNTNLTYLACDSNKLTNLD 101 (457)
T ss_dssp TCTTCSEEECCSSCCSCCC
T ss_pred cCCCCCEEECcCCCCceee
Confidence 5677777777777777764
No 145
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=34.04 E-value=13 Score=29.64 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=8.2
Q ss_pred CCCceEEEcCCCCcc
Q 041805 190 AKKLVFLEMPNSSIE 204 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~ 204 (215)
+++|++|+|++|++.
T Consensus 117 ~~~L~~L~L~~~~l~ 131 (336)
T 2ast_B 117 CSKLQNLSLEGLRLS 131 (336)
T ss_dssp BCCCSEEECTTCBCC
T ss_pred CCCCCEEeCcCcccC
Confidence 455555555555554
No 146
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=33.40 E-value=16 Score=29.02 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.8
Q ss_pred CCCceEEEcCCCCccccc
Q 041805 190 AKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 190 ~~~L~~L~L~~s~i~~L~ 207 (215)
+.+|++|+|++|+|..+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~ 186 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLD 186 (267)
T ss_dssp CTTCCEEECTTSCCCCCG
T ss_pred CCCCCEEECCCCCCCCCc
Confidence 468999999999998875
No 147
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=33.32 E-value=23 Score=31.60 Aligned_cols=30 Identities=20% Similarity=0.228 Sum_probs=19.9
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|....+.+|++|+|++|+|..++ ++..|
T Consensus 79 ~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l 108 (605)
T 1m9s_A 79 DIKPLTNLKNLGWLFLDENKIKDLS-SLKDL 108 (605)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCCCT-TSTTC
T ss_pred CChhhccCCCCCEEECcCCCCCCCh-hhccC
Confidence 4554336778888888888887766 34443
No 148
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=31.99 E-value=26 Score=29.60 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=20.1
Q ss_pred CCCCCCCCCCceEEEcCCCCccccccccccC
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLWDGMKVC 213 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~~~~~~l 213 (215)
.+|.-..+.+|++|+|++|+|+.++. ++.+
T Consensus 104 ~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l 133 (466)
T 1o6v_A 104 DITPLANLTNLTGLTLFNNQITDIDP-LKNL 133 (466)
T ss_dssp CCGGGTTCTTCCEEECCSSCCCCCGG-GTTC
T ss_pred cChhhcCCCCCCEEECCCCCCCCChH-HcCC
Confidence 44443367888888888888887763 4433
No 149
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=30.19 E-value=37 Score=30.22 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=8.8
Q ss_pred CCCCceEEEcCCCCcccc
Q 041805 189 SAKKLVFLEMPNSSIEQL 206 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~L 206 (215)
.+.+|+.|+|++|+|..+
T Consensus 129 ~l~~L~~L~Ls~N~l~~l 146 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI 146 (605)
T ss_dssp GCTTCSEEECCSSCCCCC
T ss_pred CCCccCEEECCCCccCCc
Confidence 344455555555555444
No 150
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=29.57 E-value=52 Score=21.37 Aligned_cols=36 Identities=6% Similarity=-0.063 Sum_probs=24.8
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHcCCchh
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNASGFYPK 121 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~g~~~~ 121 (215)
|++.+.+++.++..-|... +++.++ .+|..+.....
T Consensus 29 Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~ 66 (102)
T 3zq7_A 29 LTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHS 66 (102)
T ss_dssp CCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTH
T ss_pred cCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCcc
Confidence 6677778888888888665 887766 56765444333
No 151
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=29.51 E-value=74 Score=19.65 Aligned_cols=53 Identities=13% Similarity=0.134 Sum_probs=32.5
Q ss_pred cCCchhHHhhhcccCCCCHHHHHHHHHHHhcCCc-hhHHHHHHHhhcCccHHHHH
Q 041805 39 QGVPLALKVLGCFLYEREKEVWESAINKLQRILH-PSILEVLKISYDGLDNKEKN 92 (215)
Q Consensus 39 ~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~~-~~i~~~l~~Sy~~L~~~~k~ 92 (215)
||-|....++..++.+ +..+....++.+...++ .+-..-++-.+|.|++..|.
T Consensus 1 ~~Cpal~~~v~~~l~~-s~~~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~ 54 (70)
T 1utg_A 1 GICPRFAHVIENLLLG-TPSSYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRE 54 (70)
T ss_dssp CCCHHHHHHHHHHHHS-CHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CCchhHHHHHHHHhcC-CHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 4667778888888877 55666666665543322 23344566677777765543
No 152
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=28.45 E-value=58 Score=20.82 Aligned_cols=31 Identities=6% Similarity=0.068 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHc
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNAS 116 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~ 116 (215)
|++.+.+++.++..-|... +++.++ .+|..+
T Consensus 23 Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~ 55 (96)
T 3rjp_A 23 LTKREYDLLNILMTNMNRVMTREELLSNVWKYD 55 (96)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSC
T ss_pred cCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCC
Confidence 6777888888888888765 887776 567543
No 153
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=27.68 E-value=1.7e+02 Score=22.67 Aligned_cols=45 Identities=16% Similarity=-0.060 Sum_probs=31.3
Q ss_pred CCCCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHhcCCchhHHh
Q 041805 1 MEALEYHLALERFSRHAFKQNHPDVGYEELSSKAMKYAQGVPLALKV 47 (215)
Q Consensus 1 v~~L~~~ea~~Lf~~~af~~~~~~~~~~~~~~~iv~~c~GlPLal~~ 47 (215)
+.|++.++...++...+...... --.+....+++.++|-|..+..
T Consensus 166 ~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~ 210 (327)
T 1iqp_A 166 FRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAIN 210 (327)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHH
T ss_pred ecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHH
Confidence 46899999999998877332211 1234567888999999886544
No 154
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=27.01 E-value=1.1e+02 Score=22.03 Aligned_cols=47 Identities=11% Similarity=0.008 Sum_probs=31.8
Q ss_pred HHHHHHHhhccCCC-CHHHHHHHHHHcCCchhhhHHHHHhccCceecc
Q 041805 91 KNIFLDVACFFQGE-DVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSN 137 (215)
Q Consensus 91 k~~fl~~a~fp~~~-~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~ 137 (215)
=++..|+|..+... +.+.+.....-..-.....+..|...+++....
T Consensus 15 lr~l~~La~~~~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 15 VHSILYLDAHRDSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp HHHHHHHHTTTTSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEEC
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeec
Confidence 35667888776543 666666554433334467899999999998764
No 155
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=26.76 E-value=83 Score=21.16 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=24.2
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHcCCc
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNASGFY 119 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~g~~ 119 (215)
|++.+..++.++..-|... +++.++ .+|..+...
T Consensus 37 Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~ 72 (120)
T 2z9m_A 37 LTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFG 72 (120)
T ss_dssp CCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTCCS
T ss_pred CCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCC
Confidence 6777888888888888766 887766 568644333
No 156
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=26.75 E-value=30 Score=29.42 Aligned_cols=25 Identities=16% Similarity=0.040 Sum_probs=20.8
Q ss_pred CCCCCCCCCCceEEEcCCCCccccc
Q 041805 183 SLPSNISAKKLVFLEMPNSSIEQLW 207 (215)
Q Consensus 183 ~lP~~~~~~~L~~L~L~~s~i~~L~ 207 (215)
.+|.-..+++|++|+|++|+|+.++
T Consensus 56 ~~~~l~~l~~L~~L~Ls~n~l~~~~ 80 (457)
T 3bz5_A 56 DMTGIEKLTGLTKLICTSNNITTLD 80 (457)
T ss_dssp CCTTGGGCTTCSEEECCSSCCSCCC
T ss_pred cChhhcccCCCCEEEccCCcCCeEc
Confidence 5674347899999999999999986
No 157
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=25.80 E-value=44 Score=23.56 Aligned_cols=86 Identities=16% Similarity=0.117 Sum_probs=48.7
Q ss_pred hhHHHHHHHhhcCccHHHHHHHHHHhhcc---C--CC-CHHHHHHHHHHcCCchhhhHHHHHhccCceecc----CC---
Q 041805 73 PSILEVLKISYDGLDNKEKNIFLDVACFF---Q--GE-DVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSN----NN--- 139 (215)
Q Consensus 73 ~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp---~--~~-~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~----~~--- 139 (215)
-.|...|-.-|..|.-....+.+.+-++- . .+ +.+.+........-.....++.|++++||.+.. +|
T Consensus 15 ~~ip~~LL~~y~~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~ 94 (135)
T 2v79_A 15 STIPNLLLTHYKQLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKF 94 (135)
T ss_dssp EEEEHHHHHHHHHHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEE
T ss_pred ccchHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceE
Confidence 34555666667665544444433333322 1 22 555544332221112255799999999999832 33
Q ss_pred -eEEecHHHHHHHHHHHhhc
Q 041805 140 -KITMHDLLQELGRDIVSKE 158 (215)
Q Consensus 140 -~~~mHdlvr~~a~~i~~~e 158 (215)
.|.+-.++..+......+.
T Consensus 95 ~~ydL~pL~ekL~~~~~~~~ 114 (135)
T 2v79_A 95 EKYSLQPLWGKLYEYIQLAQ 114 (135)
T ss_dssp EEEECHHHHHHHHHHHHHHH
T ss_pred EEeeHHHHHHHHHHHHHHHH
Confidence 4899899988876664443
No 158
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.73 E-value=1.7e+02 Score=19.95 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=49.0
Q ss_pred hhHHHHHHHhhcC--ccHHHHHHHHHHhhcc---CCC-CHHHHHHHHHHcCCch---hhhHHHHHhccCceecc----CC
Q 041805 73 PSILEVLKISYDG--LDNKEKNIFLDVACFF---QGE-DVNLVMKFLNASGFYP---KLGRSVLVDKSLIVKSN----NN 139 (215)
Q Consensus 73 ~~i~~~l~~Sy~~--L~~~~k~~fl~~a~fp---~~~-~~~~l~~~w~~~g~~~---~~~l~~L~~~~Ll~~~~----~~ 139 (215)
-.+...+..-|.. |++..-.+++++.-|- ..+ +...+... .|... ...++.|..+++|.... +|
T Consensus 15 ~~i~~~ll~~y~~lgLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~---l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g 91 (128)
T 2vn2_A 15 IAVPKLLLGHYKQLGLGEGELVLLLHMQSFFEEGVLFPTPAELAER---MTVSAAECMEMVRRLLQKGMIAIEEHTDEQG 91 (128)
T ss_dssp EEEEHHHHTTTTTTTCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHT---SSSCHHHHHHHHHHHHHTTSSEECC------
T ss_pred eechHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHH---HCcCHHHHHHHHHHHHHCCCEEEEeEECCCC
Confidence 3445556666774 4444444555555442 122 55555443 33333 45799999999999753 22
Q ss_pred ----eEEecHHHHHHHHHHHhhc
Q 041805 140 ----KITMHDLLQELGRDIVSKE 158 (215)
Q Consensus 140 ----~~~mHdlvr~~a~~i~~~e 158 (215)
.|.+-.++..++.....+.
T Consensus 92 ~~~~~Ydl~pl~~kL~~~~~~~~ 114 (128)
T 2vn2_A 92 IRNEKYTLEPLWEKLVHHLYTQA 114 (128)
T ss_dssp ----CEECHHHHHHHHHHHHHHH
T ss_pred cEEEEEehHHHHHHHHHHHHHHH
Confidence 4899999888876654443
No 159
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=24.44 E-value=79 Score=21.03 Aligned_cols=31 Identities=16% Similarity=-0.006 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHc
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNAS 116 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~ 116 (215)
|++.+.+++.++..-|... +++.++ .+|...
T Consensus 29 Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~ 61 (112)
T 2jzy_A 29 LTGKEYVLLELLLQRTGEVLPRSLISSLVWNMN 61 (112)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCC
T ss_pred cCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCC
Confidence 6777788888888878665 887776 567654
No 160
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=24.40 E-value=23 Score=28.99 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=10.8
Q ss_pred CCCCceEEEcCCCCccc
Q 041805 189 SAKKLVFLEMPNSSIEQ 205 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~~ 205 (215)
.+++|++|+|++|+|..
T Consensus 242 ~~~~L~~L~L~~n~i~~ 258 (386)
T 2ca6_A 242 SWPNLRELGLNDCLLSA 258 (386)
T ss_dssp GCTTCCEEECTTCCCCH
T ss_pred cCCCcCEEECCCCCCch
Confidence 44567777777776654
No 161
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=24.29 E-value=21 Score=29.22 Aligned_cols=16 Identities=19% Similarity=0.229 Sum_probs=11.2
Q ss_pred CCCCceEEEcCCCCcc
Q 041805 189 SAKKLVFLEMPNSSIE 204 (215)
Q Consensus 189 ~~~~L~~L~L~~s~i~ 204 (215)
.+++|++|+|++|+|.
T Consensus 120 ~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 120 KHTPLEHLYLHNNGLG 135 (386)
T ss_dssp HCTTCCEEECCSSCCH
T ss_pred hCCCCCEEECcCCCCC
Confidence 4567777777777764
No 162
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=21.80 E-value=82 Score=20.58 Aligned_cols=31 Identities=3% Similarity=-0.001 Sum_probs=22.9
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHc
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNAS 116 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~ 116 (215)
|++.+..++.++..-|... +++.++ .+|...
T Consensus 32 Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~ 64 (106)
T 1gxq_A 32 MGPTEFKLLHFFMTHPERVYSREQLLNHVWGTN 64 (106)
T ss_dssp CCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSS
T ss_pred cCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCC
Confidence 6777888888888877665 887776 567543
No 163
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=21.53 E-value=1e+02 Score=20.84 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=23.3
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHc
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNAS 116 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~ 116 (215)
|++....++.++..-|... +++.++ .+|...
T Consensus 44 Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~ 76 (121)
T 2hwv_A 44 LTHREFELLYYLAKHIGQVMTREHLLQTVWGYD 76 (121)
T ss_dssp CCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGG
T ss_pred CCHHHHHHHHHHHHcCCeEEcHHHHHHHHcCCC
Confidence 6777788888888888665 888776 578654
No 164
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=21.32 E-value=91 Score=20.57 Aligned_cols=31 Identities=6% Similarity=-0.059 Sum_probs=23.0
Q ss_pred ccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHc
Q 041805 86 LDNKEKNIFLDVACFFQGE-DVNLVM-KFLNAS 116 (215)
Q Consensus 86 L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~ 116 (215)
|++....++.++..-|... +++.++ .+|...
T Consensus 35 Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~ 67 (110)
T 2pmu_A 35 LSPTEFTLLRYFVINAGTVLSKPKILDHVWRYD 67 (110)
T ss_dssp CCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTT
T ss_pred cCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCC
Confidence 6777788888888888665 888776 567654
No 165
>2zhj_A Annexin A4; zynogen granule, membrane binding protein, metal binding protein, calcium, calcium/phospholipid-binding; 1.35A {Rattus norvegicus} PDB: 2zhi_A 2zoc_A 1ann_A 1i4a_A 1aow_A
Probab=20.90 E-value=2.2e+02 Score=22.94 Aligned_cols=71 Identities=15% Similarity=0.088 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhcCCchhHHhhhcccCCCCHHHHHHHHHHHhcCCchhHHHHHHHhhcCccHHHHHHHHHHhhcc
Q 041805 28 EELSSKAMKYAQGVPLALKVLGCFLYEREKEVWESAINKLQRILHPSILEVLKISYDGLDNKEKNIFLDVACFF 101 (215)
Q Consensus 28 ~~~~~~iv~~c~GlPLal~~ig~~L~~k~~~~w~~~l~~l~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~fp 101 (215)
..-++.+-+.+.|+=-==.++-..|..++..++..+...+...-.+++...|+. .++.+.++++..+...|
T Consensus 20 ~~Da~~L~kA~kG~GtdE~~li~IL~~rs~~qr~~I~~~Y~~~~g~~L~~~lks---elsG~fe~~l~~l~~~~ 90 (322)
T 2zhj_A 20 TEDAQVLRKAMKGLGTDEDAIIGVLACRNTAQRQEIRTAYKSTIGRDLLEDLKS---ELSSNFEQVILGMMTPT 90 (322)
T ss_dssp HHHHHHHHHHHSSSSCCHHHHHHHHTTSCHHHHHHHHHHHHHHHCSCHHHHHHH---HCCHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhCchHHHHHHh---hcCccHHHHHHHHcCCc
Confidence 455777777788763323334444555677777776666554334445555543 24455566655555544
No 166
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=20.72 E-value=98 Score=21.45 Aligned_cols=33 Identities=12% Similarity=-0.081 Sum_probs=23.8
Q ss_pred CccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHcC
Q 041805 85 GLDNKEKNIFLDVACFFQGE-DVNLVM-KFLNASG 117 (215)
Q Consensus 85 ~L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~g 117 (215)
.|++.+.+++.++..-|... +++.++ .+|..+.
T Consensus 60 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~ 94 (133)
T 3q9v_A 60 RLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRL 94 (133)
T ss_dssp CCCHHHHHHHHHHTTSTTCEEEHHHHHHHHHTTCC
T ss_pred EcCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCC
Confidence 36777888888888877665 887766 5686543
No 167
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=20.68 E-value=1.5e+02 Score=20.20 Aligned_cols=35 Identities=11% Similarity=0.096 Sum_probs=24.1
Q ss_pred CccHHHHHHHHHHhhccCCC-CHHHHH-HHHHHcCCc
Q 041805 85 GLDNKEKNIFLDVACFFQGE-DVNLVM-KFLNASGFY 119 (215)
Q Consensus 85 ~L~~~~k~~fl~~a~fp~~~-~~~~l~-~~w~~~g~~ 119 (215)
.|++..-+++.+++--|... +++.+. .+|......
T Consensus 36 ~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~ 72 (120)
T 2zxj_A 36 ELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFG 72 (120)
T ss_dssp CCCHHHHHHHHHHHTTTTCCBCHHHHHHHHHCTTCCS
T ss_pred EcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCC
Confidence 36777777888888777665 887766 678654333
No 168
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=20.23 E-value=2.5e+02 Score=20.36 Aligned_cols=42 Identities=10% Similarity=0.051 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHcCCchhhhHHHHHhccCceeccCCeEEecHH
Q 041805 104 EDVNLVMKFLNASGFYPKLGRSVLVDKSLIVKSNNNKITMHDL 146 (215)
Q Consensus 104 ~~~~~l~~~w~~~g~~~~~~l~~L~~~~Ll~~~~~~~~~mHdl 146 (215)
.+...++.+....--.....+..|.+.++|... .+++.++|.
T Consensus 178 ~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~~-~~~i~i~d~ 219 (227)
T 3d0s_A 178 LTQEEIAQLVGASRETVNKALADFAHRGWIRLE-GKSVLISDS 219 (227)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE-TTEEEESCH
T ss_pred CCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEec-CCEEEEcCH
Confidence 466777766443322235679999999999886 678888874
Done!