Query Summary

Your job contains 1 sequence.

Parameters

Threshold: 0.001

Maximum number of alignments shown: 100

BLAST filter: on

Query Sequence

>041808
MCETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTL
SFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRS
WKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGKKKKIK
LKFTSKKWRRYLVMLGR

High Scoring Gene Products

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041808
        (197 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2085725 - symbol:NDR1 "AT3G20600" species:3702...   150  9.4e-11   1
TAIR|locus:2085715 - symbol:AT3G20590 "AT3G20590" species...   144  7.2e-10   1
TAIR|locus:2085735 - symbol:AT3G20610 "AT3G20610" species...   112  4.2e-06   1


>TAIR|locus:2085725 [details] [associations]
            symbol:NDR1 "AT3G20600" species:3702 "Arabidopsis
            thaliana" [GO:0009816 "defense response to bacterium, incompatible
            interaction" evidence=IMP] [GO:0009817 "defense response to fungus,
            incompatible interaction" evidence=IMP] [GO:0009626 "plant-type
            hypersensitive response" evidence=IMP] [GO:0042742 "defense
            response to bacterium" evidence=IMP] [GO:0046658 "anchored to
            plasma membrane" evidence=IDA] [GO:0005515 "protein binding"
            evidence=IPI] [GO:0010942 "positive regulation of cell death"
            evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA;TAS]
            [GO:0009814 "defense response, incompatible interaction"
            evidence=IMP] [GO:0004871 "signal transducer activity"
            evidence=TAS] [GO:0006952 "defense response" evidence=TAS]
            [GO:0016020 "membrane" evidence=ISS] EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0009817 GO:GO:0010942 GO:GO:0009626
            GO:GO:0009816 GO:GO:0046658 EMBL:AP000410 EMBL:AF021346
            EMBL:EF470696 EMBL:EF470697 EMBL:EF470704 EMBL:EF470706
            EMBL:BT002004 EMBL:BT006267 IPI:IPI00545993 RefSeq:NP_188696.1
            UniGene:At.38209 IntAct:O48915 STRING:O48915 PRIDE:O48915
            DNASU:821607 EnsemblPlants:AT3G20600.1 GeneID:821607
            KEGG:ath:AT3G20600 TAIR:At3g20600 eggNOG:NOG321916
            HOGENOM:HOG000090922 InParanoid:O48915 OMA:SFIFTAG PhylomeDB:O48915
            ProtClustDB:CLSN2685045 Genevestigator:O48915 Uniprot:O48915
        Length = 219

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 43/145 (29%), Positives = 70/145 (48%)

Query:    30 RPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFL---- 85
             R   P  ++    IP +G   +  D  N TL+F +  +NPNKD  I +DD+ L F     
Sbjct:    37 RADKPKCSIQNFFIPALGKDPNSRD--NTTLNFMVRCDNPNKDKGIYYDDVHLNFSTINT 94

Query:    86 --FGQDA---AATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDF 140
                   A       TVP F     K  +  GQ   +N ++   LR+ +  NG+A+ ++D 
Sbjct:    95 TKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKPLNNQT--VLRA-VLPNGSAVFRLDL 151

Query:   141 ATKFRYKTIGIKSKHHGAKLQGDVQ 165
              T+ R+K +  K+K +G ++  DV+
Sbjct:   152 KTQVRFKIVFWKTKRYGVEVGADVE 176


>TAIR|locus:2085715 [details] [associations]
            symbol:AT3G20590 "AT3G20590" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP000410
            HOGENOM:HOG000090922 ProtClustDB:CLSN2685045 IPI:IPI00541639
            RefSeq:NP_188695.2 UniGene:At.53404 EnsemblPlants:AT3G20590.1
            GeneID:821606 KEGG:ath:AT3G20590 TAIR:At3g20590 eggNOG:NOG305584
            InParanoid:Q9LJT9 OMA:ELGRKCC PhylomeDB:Q9LJT9
            Genevestigator:Q9LJT9 Uniprot:Q9LJT9
        Length = 255

 Score = 144 (55.7 bits), Expect = 7.2e-10, P = 7.2e-10
 Identities = 46/146 (31%), Positives = 71/146 (48%)

Query:    30 RPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLF--- 86
             R K P  ++    IP +  + S  D  N TL+F +  +NPNKD  I +DD+ LTF     
Sbjct:    37 RAKKPKCSIQNFYIPALSKNLSSRD--NTTLNFMVRCDNPNKDKGIYYDDVHLTFSTINT 94

Query:    87 ----GQDAA--ATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDF 140
                   D    A  TVP F     K  +  GQ   +N ++   LR+ +  NG+A+ ++D 
Sbjct:    95 TTTNSSDLVLVANYTVPKFYQGHKKKAKKWGQVWPLNNQT--VLRA-VLPNGSAVFRLDL 151

Query:   141 ATKFRYKTIGIKSK-HHGAKLQGDVQ 165
              T  R+K +  K+K +   K+  DV+
Sbjct:   152 KTHVRFKIVFWKTKWYRRIKVGADVE 177


>TAIR|locus:2085735 [details] [associations]
            symbol:AT3G20610 "AT3G20610" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005886
            "plasma membrane" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AP000410
            HOGENOM:HOG000090922 IPI:IPI00531967 RefSeq:NP_683581.1
            UniGene:At.53405 EnsemblPlants:AT3G20610.1 GeneID:821608
            KEGG:ath:AT3G20610 TAIR:At3g20610 eggNOG:NOG281602
            InParanoid:Q9LJT8 OMA:NEDGATK PhylomeDB:Q9LJT8
            ProtClustDB:CLSN2917946 Genevestigator:Q9LJT8 Uniprot:Q9LJT8
        Length = 222

 Score = 112 (44.5 bits), Expect = 4.2e-06, P = 4.2e-06
 Identities = 36/135 (26%), Positives = 66/135 (48%)

Query:    34 PTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFL--FGQDA- 90
             P  ++    IP +  S   +D  N TL+F + ++N N    I ++D+ L+F       + 
Sbjct:    41 PRCSIHYFYIPALNKSLISSD--NTTLNFMVRLKNINAKQGIYYEDLHLSFSTRINNSSL 98

Query:    91 -AATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKFRYKTI 149
               A  TVP F     K  +  GQ++  N ++   +  ++  NG+A+ +VD   + +YK +
Sbjct:    99 LVANYTVPRFYQGHEKKAKKWGQALPFNNQT---VIQAVLPNGSAIFRVDLKMQVKYKVM 155

Query:   150 GIKSKHHGAKLQGDV 164
               K+K +  KL+  V
Sbjct:   156 SWKTKRY--KLKASV 168


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.133   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      197       154   0.00088  105 3  11 22  0.38    32
                                                     30  0.41    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  576 (61 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.57u 0.15s 14.72t   Elapsed:  00:00:01
  Total cpu time:  14.57u 0.15s 14.72t   Elapsed:  00:00:01
  Start:  Sat May 11 05:56:34 2013   End:  Sat May 11 05:56:35 2013

Back to top