BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041808
(197 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O48915|NDR1_ARATH Protein NDR1 OS=Arabidopsis thaliana GN=NDR1 PE=1 SV=1
Length = 219
Score = 90.1 bits (222), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 91/187 (48%), Gaps = 15/187 (8%)
Query: 5 RNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFAL 64
RN L + GL +L LWLSLR P ++ IP +G P N TL+F +
Sbjct: 12 RNCCTCCLSFIFTAGLTSLFLWLSLRADKPKCSIQNFFIPALG--KDPNSRDNTTLNFMV 69
Query: 65 EVENPNKDSSINFDDIILTFLFGQDA---------AATDTVPSFDLDKNKDREIRGQSVN 115
+NPNKD I +DD+ L F TVP F K + GQ
Sbjct: 70 RCDNPNKDKGIYYDDVHLNFSTINTTKINSSALVLVGNYTVPKFYQGHKKKAKKWGQVKP 129
Query: 116 INGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHHGAKLQGDVQLGKDGKISGK 175
+N ++ + ++ NG+A+ ++D T+ R+K + K+K +G ++ DV++ DG + +
Sbjct: 130 LNNQT---VLRAVLPNGSAVFRLDLKTQVRFKIVFWKTKRYGVEVGADVEVNGDG-VKAQ 185
Query: 176 KKKIKLK 182
KK IK+K
Sbjct: 186 KKGIKMK 192
>sp|Q8VZ13|Y1816_ARATH Uncharacterized protein At1g08160 OS=Arabidopsis thaliana
GN=At1g08160 PE=2 SV=1
Length = 221
Score = 39.7 bits (91), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 10/137 (7%)
Query: 24 ILWLSLRPKNPTVTVVELTIP--PIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDI- 80
I +L+LRPK TV ++ IG++ D N S+ ++ NP K S+ + +
Sbjct: 57 ITYLTLRPKRLIYTVEAASVQEFAIGNND---DHINAKFSYVIKSYNPEKHVSVRYHSMR 113
Query: 81 ILTFLFGQDAAATDTVPSFDLDKNKDR---EIRGQSVNINGRSWKSLRSSISKNGTALLK 137
I T Q A + P KN+ R ++ +V ++ + + LR+ SK GT ++
Sbjct: 114 ISTAHHNQSVAHKNISPFKQRPKNETRIETQLVSHNVALSKFNARDLRAEKSK-GTIEME 172
Query: 138 VDFATKFRYKTIGIKSK 154
V + YKT +S+
Sbjct: 173 VYITARVSYKTWIFRSR 189
>sp|Q8N5K1|CISD2_HUMAN CDGSH iron-sulfur domain-containing protein 2 OS=Homo sapiens
GN=CISD2 PE=1 SV=1
Length = 135
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 12 LQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNK 71
L+++ LG++AL+ +L++RP P + ++ ++ ENP
Sbjct: 39 LRLLPFLGVLALLGYLAVRPFLP----------------KKKQQKDSLINLKIQKENPKV 82
Query: 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSV 114
+ IN +D+ LT + T P+ D NK E+ G +V
Sbjct: 83 VNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 125
>sp|Q05B71|CISD2_BOVIN CDGSH iron-sulfur domain-containing protein 2 OS=Bos taurus
GN=CISD2 PE=2 SV=1
Length = 135
Score = 36.6 bits (83), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 12 LQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNK 71
L+++ LG++AL+ +L++RP P + ++ ++ ENP
Sbjct: 39 LRLLPFLGVLALLGYLAVRPFLP----------------KKKQQKDSLINLKIQKENPKV 82
Query: 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSV 114
+ IN +D+ LT + T P+ D NK E+ G +V
Sbjct: 83 VNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 125
>sp|Q9CQB5|CISD2_MOUSE CDGSH iron-sulfur domain-containing protein 2 OS=Mus musculus
GN=Cisd2 PE=1 SV=1
Length = 135
Score = 36.2 bits (82), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 12 LQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNK 71
L+++ LG++AL+ +L++RP P + ++ ++ ENP
Sbjct: 39 LRLLPFLGVLALLGYLAVRPFFP----------------KKKQQKDSLINLKIQKENPKV 82
Query: 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSV 114
+ IN +D+ LT + T P+ D NK E+ G +V
Sbjct: 83 VNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNELTGDNV 125
>sp|Q5I027|CISD2_XENTR CDGSH iron-sulfur domain-containing protein 2 OS=Xenopus tropicalis
GN=cisd2 PE=2 SV=1
Length = 135
Score = 32.7 bits (73), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 12 LQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNK 71
L+++ LG++AL+ +L++RP P + ++ ++ ENP
Sbjct: 39 LRLLPFLGVLALLGYLAIRPFLP----------------KKKQQKDSLINLKIQKENPKV 82
Query: 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSV 114
+ IN +D+ L + T P D NK E+ G +V
Sbjct: 83 VNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNV 125
>sp|Q6AZG1|CID2B_XENLA CDGSH iron-sulfur domain-containing protein 2B OS=Xenopus laevis
GN=cisd2-b PE=2 SV=1
Length = 135
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 12 LQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNK 71
L+++ LG++AL+ +L++RP P + ++ ++ ENP
Sbjct: 39 LRLLPFLGVLALLGYLAIRPFLP----------------KKKQQKDSLINLKIQKENPKV 82
Query: 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSV 114
+ IN +D+ L + T P D NK E+ G +V
Sbjct: 83 VNEINIEDLHLAKAAYCRCWRSKTFPVCDGSHNKHNELTGDNV 125
>sp|P29539|RIF1_YEAST Telomere length regulator protein RIF1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RIF1 PE=1 SV=3
Length = 1916
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%)
Query: 147 KTIGIKSKHHGAKL-------QGDVQLGKDGKISGKKKK----IKLKFTSKKWRRYLVML 195
KTIG K KHH +L G+ LG DG ++ +K+ F SKK RR + L
Sbjct: 1816 KTIGGKEKHHEIQLGQAHTEADGEPLLGGDGNEDATSREATPSLKVHFFSKKSRRLVARL 1875
>sp|C1C524|CISD2_LITCT CDGSH iron-sulfur domain-containing protein 2 OS=Lithobates
catesbeiana GN=cisd2 PE=2 SV=1
Length = 135
Score = 30.0 bits (66), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 22/103 (21%), Positives = 45/103 (43%), Gaps = 16/103 (15%)
Query: 12 LQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNK 71
L+++ LG++AL+ +L++RP P + ++ ++ ENP
Sbjct: 39 LRLLPFLGVLALLGYLAIRPFLP----------------KKKQQKDSLINLKIQKENPKV 82
Query: 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSV 114
+ I+ +D+ + + + T P D NK E+ G +V
Sbjct: 83 VNEIDIEDLRIAKVAYCRCWRSKTFPVCDGSHNKHNELTGDNV 125
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.136 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,927,503
Number of Sequences: 539616
Number of extensions: 2893891
Number of successful extensions: 7154
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7149
Number of HSP's gapped (non-prelim): 21
length of query: 197
length of database: 191,569,459
effective HSP length: 111
effective length of query: 86
effective length of database: 131,672,083
effective search space: 11323799138
effective search space used: 11323799138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)