Query 041808
Match_columns 197
No_of_seqs 133 out of 758
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 10:51:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041808.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041808hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03160 uncharacterized prote 100.0 1.3E-36 2.9E-41 245.7 22.5 178 2-182 35-218 (219)
2 PF03168 LEA_2: Late embryogen 99.4 3.4E-13 7.4E-18 95.5 7.8 96 63-162 1-101 (101)
3 smart00769 WHy Water Stress an 98.6 6.9E-07 1.5E-11 63.6 10.4 82 55-139 12-95 (100)
4 PF07092 DUF1356: Protein of u 97.1 0.024 5.2E-07 46.3 13.3 81 28-110 95-176 (238)
5 COG5608 LEA14-like dessication 96.6 0.2 4.3E-06 38.2 14.5 92 32-133 31-124 (161)
6 PF12751 Vac7: Vacuolar segreg 95.5 0.071 1.5E-06 46.5 7.7 37 56-93 346-382 (387)
7 PLN03160 uncharacterized prote 92.9 4.3 9.4E-05 32.9 14.8 99 2-107 38-146 (219)
8 KOG3950 Gamma/delta sarcoglyca 87.5 2.2 4.7E-05 35.2 6.3 74 4-77 32-127 (292)
9 TIGR02588 conserved hypothetic 82.0 4.5 9.8E-05 29.8 5.3 53 11-72 9-63 (122)
10 PF14155 DUF4307: Domain of un 81.4 11 0.00025 27.1 7.3 70 17-98 14-86 (112)
11 PRK10893 lipopolysaccharide ex 77.6 33 0.00072 27.1 9.6 20 30-49 37-56 (192)
12 PF12505 DUF3712: Protein of u 69.6 38 0.00082 24.6 7.5 65 90-156 2-67 (125)
13 COG4698 Uncharacterized protei 65.8 5.5 0.00012 31.3 2.4 38 4-43 11-48 (197)
14 PF11322 DUF3124: Protein of u 60.7 28 0.00061 25.8 5.2 71 55-128 20-92 (125)
15 PF09624 DUF2393: Protein of u 57.5 58 0.0013 24.3 6.8 64 23-97 35-100 (149)
16 PF08113 CoxIIa: Cytochrome c 54.6 8.3 0.00018 21.6 1.2 17 11-27 8-24 (34)
17 KOG3927 Na+/K+ ATPase, beta su 48.3 22 0.00048 30.3 3.4 33 16-49 57-92 (300)
18 PF04790 Sarcoglycan_1: Sarcog 47.7 1.7E+02 0.0036 24.5 12.1 12 61-72 89-100 (264)
19 PRK06531 yajC preprotein trans 46.6 12 0.00025 27.3 1.3 13 22-34 13-25 (113)
20 PF05170 AsmA: AsmA family; I 46.5 96 0.0021 28.6 7.7 67 76-144 469-535 (604)
21 PF12505 DUF3712: Protein of u 45.3 56 0.0012 23.7 4.8 27 56-83 98-124 (125)
22 PF11906 DUF3426: Protein of u 44.6 1.3E+02 0.0027 22.3 7.3 58 36-96 48-106 (149)
23 PRK05529 cell division protein 44.5 47 0.001 27.4 4.8 15 33-47 58-72 (255)
24 PRK13150 cytochrome c-type bio 42.3 52 0.0011 25.4 4.3 23 4-26 6-28 (159)
25 PF04478 Mid2: Mid2 like cell 37.7 17 0.00036 27.9 1.0 22 14-35 60-81 (154)
26 PRK13159 cytochrome c-type bio 36.4 1E+02 0.0023 23.6 5.2 23 4-26 6-28 (155)
27 PF09911 DUF2140: Uncharacteri 35.1 54 0.0012 25.8 3.6 19 16-34 13-31 (187)
28 PF09604 Potass_KdpF: F subuni 34.5 22 0.00047 18.7 0.8 21 13-33 4-24 (25)
29 PF06092 DUF943: Enterobacteri 34.0 30 0.00066 26.6 1.9 18 15-32 12-29 (157)
30 PF10907 DUF2749: Protein of u 33.2 50 0.0011 21.5 2.5 14 19-32 15-28 (66)
31 PRK14762 membrane protein; Pro 33.1 58 0.0013 17.0 2.3 16 7-22 3-18 (27)
32 PF07705 CARDB: CARDB; InterP 33.0 1.5E+02 0.0032 19.6 6.2 43 56-101 17-59 (101)
33 PF13598 DUF4139: Domain of un 32.3 2.9E+02 0.0064 23.0 7.9 43 62-109 170-212 (317)
34 PRK14759 potassium-transportin 30.8 29 0.00062 18.9 0.9 21 13-33 8-28 (29)
35 PF15012 DUF4519: Domain of un 30.4 57 0.0012 20.6 2.4 13 20-32 44-56 (56)
36 PF06129 Chordopox_G3: Chordop 30.2 94 0.002 22.4 3.8 30 60-89 51-86 (109)
37 TIGR03545 conserved hypothetic 29.9 1.9E+02 0.0041 26.9 6.7 43 33-85 42-87 (555)
38 PF06024 DUF912: Nucleopolyhed 29.8 85 0.0018 22.1 3.5 25 6-30 63-88 (101)
39 PF01102 Glycophorin_A: Glycop 28.0 30 0.00065 25.5 0.9 30 11-40 71-101 (122)
40 COG0316 sufA Fe-S cluster asse 27.3 75 0.0016 22.9 2.9 12 63-74 90-101 (110)
41 PF09865 DUF2092: Predicted pe 27.2 3.3E+02 0.0072 21.9 7.9 37 55-92 36-74 (214)
42 TIGR02115 potass_kdpF K+-trans 26.2 17 0.00037 19.3 -0.4 20 14-33 4-23 (26)
43 COG1589 FtsQ Cell division sep 25.8 93 0.002 25.8 3.7 33 13-45 37-69 (269)
44 PF11395 DUF2873: Protein of u 25.5 35 0.00076 19.7 0.7 11 20-30 23-33 (43)
45 PF05399 EVI2A: Ectropic viral 24.8 79 0.0017 25.6 2.8 19 6-24 131-149 (227)
46 PF13396 PLDc_N: Phospholipase 24.0 1.1E+02 0.0024 17.8 2.8 16 17-32 31-46 (46)
47 PF03100 CcmE: CcmE; InterPro 23.1 1.1E+02 0.0024 22.5 3.3 8 81-88 83-90 (131)
48 PF05545 FixQ: Cbb3-type cytoc 22.9 42 0.0009 20.2 0.8 11 23-33 24-34 (49)
49 PRK05886 yajC preprotein trans 22.9 38 0.00082 24.4 0.7 11 24-34 17-27 (109)
50 PF02468 PsbN: Photosystem II 22.1 1.2E+02 0.0025 18.2 2.5 22 11-32 9-30 (43)
51 PF05781 MRVI1: MRVI1 protein; 20.8 93 0.002 28.7 2.9 27 5-31 478-504 (538)
52 PTZ00382 Variant-specific surf 20.7 82 0.0018 22.0 2.0 16 15-30 77-93 (96)
53 PF12321 DUF3634: Protein of u 20.6 52 0.0011 23.7 1.0 17 22-38 10-28 (108)
54 PF07509 DUF1523: Protein of u 20.2 4.4E+02 0.0094 20.7 7.6 21 29-49 24-44 (175)
No 1
>PLN03160 uncharacterized protein; Provisional
Probab=100.00 E-value=1.3e-36 Score=245.70 Aligned_cols=178 Identities=19% Similarity=0.205 Sum_probs=146.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHhheeeEeeCCCCEEEEEEEEecceeCCCC--CCCCcceEEEEEEEEEcCCCeeEEEEcc
Q 041808 2 CETRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTIPPIGDSSS--PADDSNGTLSFALEVENPNKDSSINFDD 79 (197)
Q Consensus 2 ~~~r~~c~~~~~~i~~~~i~~li~~lvlrP~~P~~~V~s~~l~~~~~~~~--~~~~l~~~l~~~l~~~NPN~~~~i~Y~~ 79 (197)
||++||+++++++++++++++.++|++|||++|+|+|+++++++|++++. ++..+|++++++++++|||. ++|+|++
T Consensus 35 ~~~~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~~ 113 (219)
T PLN03160 35 NCIKCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYSN 113 (219)
T ss_pred cceEEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEcC
Confidence 34445555444555555666677888999999999999999999998642 22357888889999999999 8999999
Q ss_pred eEEEEEECCeEeeecccCCeeecCCCeeEEEEeeeeeCc---hhhHHHhcccccCceEEEEEEEEEEEEEEEEEEEEceE
Q 041808 80 IILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNING---RSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHH 156 (197)
Q Consensus 80 ~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~~~~~~v~l~~---~~~~~l~~d~~~~g~v~l~v~~~~~vr~k~g~~~s~~~ 156 (197)
+++.++|+|+.+|++.+|+|+|++++++.++.. +++.. ....+|.+|.+ +|.++|+++++.++|+++|.+.++++
T Consensus 114 ~~~~v~Y~g~~vG~a~~p~g~~~ar~T~~l~~t-v~~~~~~~~~~~~L~~D~~-~G~v~l~~~~~v~gkVkv~~i~k~~v 191 (219)
T PLN03160 114 TTTTIYYGGTVVGEARTPPGKAKARRTMRMNVT-VDIIPDKILSVPGLLTDIS-SGLLNMNSYTRIGGKVKILKIIKKHV 191 (219)
T ss_pred eEEEEEECCEEEEEEEcCCcccCCCCeEEEEEE-EEEEeceeccchhHHHHhh-CCeEEEEEEEEEEEEEEEEEEEEEEE
Confidence 999999999999999999999999999988742 22111 11367999999 99999999999999999999999999
Q ss_pred eeEEEEEEEeC-CCCccccCCceeeEE
Q 041808 157 GAKLQGDVQLG-KDGKISGKKKKIKLK 182 (197)
Q Consensus 157 ~~~v~C~v~v~-~~g~~~~~~c~~~~~ 182 (197)
.++++|++.++ .+.++.+++|+.+++
T Consensus 192 ~~~v~C~v~V~~~~~~i~~~~C~~~~~ 218 (219)
T PLN03160 192 VVKMNCTMTVNITSQAIQGQKCKRHVD 218 (219)
T ss_pred EEEEEeEEEEECCCCEEeccEeccccc
Confidence 99999999999 567888999987654
No 2
>PF03168 LEA_2: Late embryogenesis abundant protein; InterPro: IPR004864 Different types of LEA proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress [, ]. The function of these proteins is unknown. ; PDB: 3BUT_A 1XO8_A 1YYC_A.
Probab=99.45 E-value=3.4e-13 Score=95.49 Aligned_cols=96 Identities=17% Similarity=0.280 Sum_probs=67.2
Q ss_pred EEEEEcCCCeeEEEEcceEEEEEECCeEee-ecccCCeeecCCCeeEEEEeeeeeCchh-hHHHhcccccCceEEEEEEE
Q 041808 63 ALEVENPNKDSSINFDDIILTFLFGQDAAA-TDTVPSFDLDKNKDREIRGQSVNINGRS-WKSLRSSISKNGTALLKVDF 140 (197)
Q Consensus 63 ~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg-~~~vp~f~q~~~~t~~~~~~~v~l~~~~-~~~l~~d~~~~g~v~l~v~~ 140 (197)
+|+++|||. ++++|+++++.++|+|+.+| ....|+|+|++++++.+... +.++... ...+.++. +|..++++.+
T Consensus 1 ~l~v~NPN~-~~i~~~~~~~~v~~~g~~v~~~~~~~~~~i~~~~~~~v~~~-v~~~~~~l~~~l~~~~--~~~~~~~v~~ 76 (101)
T PF03168_consen 1 TLSVRNPNS-FGIRYDSIEYDVYYNGQRVGTGGSLPPFTIPARSSTTVPVP-VSVDYSDLPRLLKDLL--AGRVPFDVTY 76 (101)
T ss_dssp EEEEEESSS-S-EEEEEEEEEEEESSSEEEEEEECE-EEESSSCEEEEEEE-EEEEHHHHHHHHHHHH--HTTSCEEEEE
T ss_pred CEEEECCCc-eeEEEeCEEEEEEECCEEEECccccCCeEECCCCcEEEEEE-EEEcHHHHHHHHHhhh--ccccceEEEE
Confidence 589999999 99999999999999999999 78889999999999998852 4444333 34444433 4455667777
Q ss_pred EEEEEEEE-EE--EEEceEeeEEEE
Q 041808 141 ATKFRYKT-IG--IKSKHHGAKLQG 162 (197)
Q Consensus 141 ~~~vr~k~-g~--~~s~~~~~~v~C 162 (197)
++++++++ +. +.+.+++++.+|
T Consensus 77 ~~~g~~~v~~~~~~~~~~v~~~~~~ 101 (101)
T PF03168_consen 77 RIRGTFKVLGTPIFGSVRVPVSCEC 101 (101)
T ss_dssp EEEEEEE-EE-TTTSCEEEEEEEEE
T ss_pred EEEEEEEEcccceeeeEEEeEEeEC
Confidence 77777774 33 334444444444
No 3
>smart00769 WHy Water Stress and Hypersensitive response.
Probab=98.61 E-value=6.9e-07 Score=63.64 Aligned_cols=82 Identities=20% Similarity=0.223 Sum_probs=65.8
Q ss_pred CcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeEEEEeeeeeCchhhHHHhcccccCce
Q 041808 55 DSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGT 133 (197)
Q Consensus 55 ~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~~~~~~v~l~~~~~~~l~~d~~~~g~ 133 (197)
..+.++.+++++.|||. ..+.|++++..++|+|..+|++..+ ++..++++++.+... +.++......+..++. +|.
T Consensus 12 ~~~~~~~l~l~v~NPN~-~~l~~~~~~y~l~~~g~~v~~g~~~~~~~ipa~~~~~v~v~-~~~~~~~~~~~~~~l~-~~~ 88 (100)
T smart00769 12 GLEIEIVLKVKVQNPNP-FPIPVNGLSYDLYLNGVELGSGEIPDSGTLPGNGRTVLDVP-VTVNLFLAEALIWHIA-NGE 88 (100)
T ss_pred ceEEEEEEEEEEECCCC-CccccccEEEEEEECCEEEEEEEcCCCcEECCCCcEEEEEE-EEeehhHhHHHHHhhc-cCC
Confidence 57889999999999999 8999999999999999999999996 899999999998753 4444445566667776 553
Q ss_pred -EEEEEE
Q 041808 134 -ALLKVD 139 (197)
Q Consensus 134 -v~l~v~ 139 (197)
.+.+++
T Consensus 89 ~~~y~l~ 95 (100)
T smart00769 89 EIPYRLD 95 (100)
T ss_pred CccEEEE
Confidence 444333
No 4
>PF07092 DUF1356: Protein of unknown function (DUF1356); InterPro: IPR009790 This family consists of several hypothetical mammalian proteins of around 250 residues in length. The function of this family is unknown.
Probab=97.10 E-value=0.024 Score=46.34 Aligned_cols=81 Identities=12% Similarity=0.223 Sum_probs=54.7
Q ss_pred EeeCCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccCC-eeecCCCe
Q 041808 28 SLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPS-FDLDKNKD 106 (197)
Q Consensus 28 vlrP~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~-f~q~~~~t 106 (197)
.+-|+.-.++-.++.......+... .....++.-.+.++|||. ..+.-.++.+++.|....+|.+.... ...++++.
T Consensus 95 FLfPRsV~v~~~gv~s~~V~f~~~~-~~v~l~itn~lNIsN~NF-y~V~Vt~~s~qv~~~~~VVG~~~~~~~~~I~Prs~ 172 (238)
T PF07092_consen 95 FLFPRSVTVSPVGVKSVTVSFNPDK-STVQLNITNTLNISNPNF-YPVTVTNLSIQVLYMKTVVGKGKNSNITVIGPRSS 172 (238)
T ss_pred EEeCcEEEEecCcEEEEEEEEeCCC-CEEEEEEEEEEEccCCCE-EEEEEEeEEEEEEEEEeEEeeeEecceEEecccCC
Confidence 3458765554444443333232211 135556666789999998 89999999999999999999887753 35667766
Q ss_pred eEEE
Q 041808 107 REIR 110 (197)
Q Consensus 107 ~~~~ 110 (197)
+.+.
T Consensus 173 ~q~~ 176 (238)
T PF07092_consen 173 KQVN 176 (238)
T ss_pred ceEE
Confidence 6554
No 5
>COG5608 LEA14-like dessication related protein [Defense mechanisms]
Probab=96.64 E-value=0.2 Score=38.22 Aligned_cols=92 Identities=14% Similarity=0.204 Sum_probs=67.5
Q ss_pred CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeeccc-CCeeecCCCeeEEE
Q 041808 32 KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTV-PSFDLDKNKDREIR 110 (197)
Q Consensus 32 ~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~t~~~~ 110 (197)
++|.+.--.+..-... .....+-.++.++|||. +.+-...++..++-+|..+|.+.. .++..++++...++
T Consensus 31 ~~p~ve~~ka~wGkvt-------~s~~EiV~t~KiyNPN~-fPipVtgl~y~vymN~Iki~eG~~~k~~~v~p~S~~tvd 102 (161)
T COG5608 31 KKPGVESMKAKWGKVT-------NSETEIVGTLKIYNPNP-FPIPVTGLQYAVYMNDIKIGEGEILKGTTVPPNSRETVD 102 (161)
T ss_pred CCCCceEEEEEEEEEe-------ccceEEEEEEEecCCCC-cceeeeceEEEEEEcceEeeccccccceEECCCCeEEEE
Confidence 6777777777665542 23567888999999999 899999999999999999998777 57999999999988
Q ss_pred EeeeeeCc-hhhHHHhcccccCce
Q 041808 111 GQSVNING-RSWKSLRSSISKNGT 133 (197)
Q Consensus 111 ~~~v~l~~-~~~~~l~~d~~~~g~ 133 (197)
. .+.++. ...+-+...+. +|.
T Consensus 103 v-~l~~d~~~~ke~w~~hi~-ngE 124 (161)
T COG5608 103 V-PLRLDNSKIKEWWVTHIE-NGE 124 (161)
T ss_pred E-EEEEehHHHHHHHHHHhh-ccC
Confidence 4 344442 22333444555 444
No 6
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=95.47 E-value=0.071 Score=46.45 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=31.2
Q ss_pred cceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeee
Q 041808 56 SNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAAT 93 (197)
Q Consensus 56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~ 93 (197)
--.-|++++.+.|||- +.|..++.++.||-+-..+|.
T Consensus 346 qELmfdl~V~A~NPn~-~~V~I~d~dldIFAKS~yvg~ 382 (387)
T PF12751_consen 346 QELMFDLTVEAFNPNW-FTVTIDDMDLDIFAKSRYVGT 382 (387)
T ss_pred ceEEEeeEEEEECCCe-EEEEeccceeeeEecCCccCc
Confidence 3567899999999999 999999999999977655554
No 7
>PLN03160 uncharacterized protein; Provisional
Probab=92.87 E-value=4.3 Score=32.87 Aligned_cols=99 Identities=10% Similarity=0.049 Sum_probs=53.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHhheeeEeeCC--CCEEEEEEEEecc-------eeCCCCCC-CCcceEEEEEEEEEcCCC
Q 041808 2 CETRNFYLWLLQIVGLLGLIALILWLSLRPK--NPTVTVVELTIPP-------IGDSSSPA-DDSNGTLSFALEVENPNK 71 (197)
Q Consensus 2 ~~~r~~c~~~~~~i~~~~i~~li~~lvlrP~--~P~~~V~s~~l~~-------~~~~~~~~-~~l~~~l~~~l~~~NPN~ 71 (197)
|||.|+|.+++++++++++++++++=-=.|+ .-.++++++.++. +|++-.-. ..-|.+. +.+... |.
T Consensus 38 ~c~~~~~a~~l~l~~v~~~l~~~vfrPk~P~~~v~~v~l~~~~~~~~~~~~~~~n~tl~~~v~v~NPN~-~~~~Y~--~~ 114 (219)
T PLN03160 38 KCCGCITATLLILATTILVLVFTVFRVKDPVIKMNGVTVTKLELINNTTLRPGTNITLIADVSVKNPNV-ASFKYS--NT 114 (219)
T ss_pred EEHHHHHHHHHHHHHHHHheeeEEEEccCCeEEEEEEEEeeeeeccCCCCceeEEEEEEEEEEEECCCc-eeEEEc--Ce
Confidence 6788888888888878877777666555564 3555666655532 22210000 0012222 234443 34
Q ss_pred eeEEEEcceEEEEEECCeEeeecccCCeeecCCCee
Q 041808 72 DSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDR 107 (197)
Q Consensus 72 ~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~ 107 (197)
.+.++|+...+.- ..+..+..++..+..-+.+
T Consensus 115 ~~~v~Y~g~~vG~----a~~p~g~~~ar~T~~l~~t 146 (219)
T PLN03160 115 TTTIYYGGTVVGE----ARTPPGKAKARRTMRMNVT 146 (219)
T ss_pred EEEEEECCEEEEE----EEcCCcccCCCCeEEEEEE
Confidence 4788998764432 3445555555555555544
No 8
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=87.49 E-value=2.2 Score=35.19 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=39.7
Q ss_pred chhhHHHHHHHHHHHHHH---HhheeeE----eeCC---CCEEEEEEEEeccee-------C---CCCCCC--CcceEEE
Q 041808 4 TRNFYLWLLQIVGLLGLI---ALILWLS----LRPK---NPTVTVVELTIPPIG-------D---SSSPAD--DSNGTLS 61 (197)
Q Consensus 4 ~r~~c~~~~~~i~~~~i~---~li~~lv----lrP~---~P~~~V~s~~l~~~~-------~---~~~~~~--~l~~~l~ 61 (197)
||+-|..+++++++++++ ++.+|+. |.|. .-+++=+.+++..-. . .+.+.. .+...=+
T Consensus 32 WRKrcLY~fvLlL~i~ivvNLalTiWIlkVm~Fs~dGmG~Lkit~~GirleG~sefl~pl~akei~Sr~~~~l~~~S~rn 111 (292)
T KOG3950|consen 32 WRKRCLYTFVLLLMILIVVNLALTIWILKVMNFSPDGMGNLKITKKGIRLEGDSEFLQPLYAKEIHSRPGSPLYLQSARN 111 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccccceEEccCcEEEechhhhhhhhhhhhhhcCCCCceEEEeccC
Confidence 455555555555555554 4677752 5564 344444555554311 1 111111 2444556
Q ss_pred EEEEEEcCCCeeEEEE
Q 041808 62 FALEVENPNKDSSINF 77 (197)
Q Consensus 62 ~~l~~~NPN~~~~i~Y 77 (197)
+++.++|||.++.=+.
T Consensus 112 vtvnarn~~g~v~~~l 127 (292)
T KOG3950|consen 112 VTVNARNPNGKVTGQL 127 (292)
T ss_pred eeEEccCCCCceeeeE
Confidence 7899999999765443
No 9
>TIGR02588 conserved hypothetical protein TIGR02588. The function of this protein is unknown. It is always found as part of a two-gene operon with TIGR02587, a protein that appears to span the membrane seven times. It is found in Nostoc sp. PCC 7120, Agrobacterium tumefaciens, Sinorhizobium meliloti, and Gloeobacter violaceus, so far, all of which are bacterial.
Probab=82.02 E-value=4.5 Score=29.77 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhhee--eEeeCCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCe
Q 041808 11 LLQIVGLLGLIALILW--LSLRPKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKD 72 (197)
Q Consensus 11 ~~~~i~~~~i~~li~~--lvlrP~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~ 72 (197)
.+..+++++++.+++| +.-+++.|.+++......+- ...++.+-++++|--.+
T Consensus 9 ~Is~~ill~viglv~y~~l~~~~~pp~l~v~~~~~~r~---------~~gqyyVpF~V~N~gg~ 63 (122)
T TIGR02588 9 GISTLILAAMFGLVAYDWLRYSNKAAVLEVAPAEVERM---------QTGQYYVPFAIHNLGGT 63 (122)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCeEEEeehheeEE---------eCCEEEEEEEEEeCCCc
Confidence 3455566667777776 45667889998877665432 34567778888887764
No 10
>PF14155 DUF4307: Domain of unknown function (DUF4307)
Probab=81.44 E-value=11 Score=27.13 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=33.2
Q ss_pred HHHHHHhheeeEee-CCCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeee--
Q 041808 17 LLGLIALILWLSLR-PKNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAAT-- 93 (197)
Q Consensus 17 ~~~i~~li~~lvlr-P~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~-- 93 (197)
++.+++++.|+.++ ...|.++-+. ..|++.+ .-..+++++++-. |.....=... ...|++..+|.
T Consensus 14 ~vv~~~~~~w~~~~~~~~~~v~~~~---~gf~vv~----d~~v~v~f~Vtr~-~~~~a~C~Vr----A~~~d~aeVGrre 81 (112)
T PF14155_consen 14 VVVAGAVVAWFGYSQFGSPPVSAEV---IGFEVVD----DSTVEVTFDVTRD-PGRPAVCIVR----ALDYDGAEVGRRE 81 (112)
T ss_pred HHHHHHHHhHhhhhhccCCCceEEE---EEEEECC----CCEEEEEEEEEEC-CCCCEEEEEE----EEeCCCCEEEEEE
Confidence 33344556666555 4556553333 3444433 1234444444433 6552211111 22467788884
Q ss_pred cccCC
Q 041808 94 DTVPS 98 (197)
Q Consensus 94 ~~vp~ 98 (197)
..+||
T Consensus 82 V~vp~ 86 (112)
T PF14155_consen 82 VLVPP 86 (112)
T ss_pred EEECC
Confidence 55666
No 11
>PRK10893 lipopolysaccharide exporter periplasmic protein; Provisional
Probab=77.63 E-value=33 Score=27.14 Aligned_cols=20 Identities=10% Similarity=0.052 Sum_probs=16.5
Q ss_pred eCCCCEEEEEEEEecceeCC
Q 041808 30 RPKNPTVTVVELTIPPIGDS 49 (197)
Q Consensus 30 rP~~P~~~V~s~~l~~~~~~ 49 (197)
.++.|.|..++++...|+.+
T Consensus 37 ~~~~Pdy~~~~~~~~~yd~~ 56 (192)
T PRK10893 37 NNNDPTYQSQHTDTVVYNPE 56 (192)
T ss_pred CCCCCCEEEeccEEEEECCC
Confidence 46789999999999888754
No 12
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=69.60 E-value=38 Score=24.58 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=41.1
Q ss_pred EeeecccCCeeecCCCeeEEEEeeeee-CchhhHHHhcccccCceEEEEEEEEEEEEEEEEEEEEceE
Q 041808 90 AAATDTVPSFDLDKNKDREIRGQSVNI-NGRSWKSLRSSISKNGTALLKVDFATKFRYKTIGIKSKHH 156 (197)
Q Consensus 90 ~lg~~~vp~f~q~~~~t~~~~~~~v~l-~~~~~~~l~~d~~~~g~v~l~v~~~~~vr~k~g~~~s~~~ 156 (197)
++|...+|+....+..+..+.-+.+++ +.+...++.+++-.+..+.+.++.+ .+.++|.+.....
T Consensus 2 ~f~~~~lP~~~~~~~~~~~~~~~~l~i~d~~~f~~f~~~~~~~~~~~l~l~g~--~~~~~g~l~~~~i 67 (125)
T PF12505_consen 2 PFATLDLPQIKIKGNGTISIIDQTLTITDQDAFTQFVTALLFNEEVTLTLRGK--TDTHLGGLPFSGI 67 (125)
T ss_pred ceEEEECCCEEecCCceEEEeeeeEEecCHHHHHHHHHHHHhCCcEEEEEEEe--eeEEEccEEEEEE
Confidence 578889999998444444444355665 4455677777765355666666655 4677888754433
No 13
>COG4698 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.82 E-value=5.5 Score=31.33 Aligned_cols=38 Identities=21% Similarity=0.356 Sum_probs=23.1
Q ss_pred chhhHHHHHHHHHHHHHHHhheeeEeeCCCCEEEEEEEEe
Q 041808 4 TRNFYLWLLQIVGLLGLIALILWLSLRPKNPTVTVVELTI 43 (197)
Q Consensus 4 ~r~~c~~~~~~i~~~~i~~li~~lvlrP~~P~~~V~s~~l 43 (197)
++..|.+++++.++++ ++++.+++.|+.|...+.+++=
T Consensus 11 WKw~f~iLLAln~l~~--~~i~~~vlsp~ee~t~~~~a~~ 48 (197)
T COG4698 11 WKWLFFILLALNTLLA--VLIALFVLSPREEPTHLEDASE 48 (197)
T ss_pred HHHHHHHHHHHHHHHH--HHhheeeccCCCCCchhhccCc
Confidence 3455555555444443 5666678999997766666543
No 14
>PF11322 DUF3124: Protein of unknown function (DUF3124); InterPro: IPR021471 This bacterial family of proteins has no known function.
Probab=60.75 E-value=28 Score=25.76 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=45.1
Q ss_pred CcceEEEEEEEEEcCCCeeEEEEcceEEEEEE--CCeEeeecccCCeeecCCCeeEEEEeeeeeCchhhHHHhccc
Q 041808 55 DSNGTLSFALEVENPNKDSSINFDDIILTFLF--GQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSI 128 (197)
Q Consensus 55 ~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y--~g~~lg~~~vp~f~q~~~~t~~~~~~~v~l~~~~~~~l~~d~ 128 (197)
....+|+.+|++||.+.+-.++-.+.+ +| +|..+-+--=.|.+.+|-.+..+-.+.-+..+..++.|.=++
T Consensus 20 ~~~~~Lt~tLSiRNtd~~~~i~i~~v~---Yydt~G~lvr~yl~~Pi~L~Pl~t~~~vV~e~D~~GGsGANFiv~W 92 (125)
T PF11322_consen 20 HRPFNLTATLSIRNTDPTDPIYITSVD---YYDTDGKLVRSYLDKPIYLKPLATTEFVVEESDTSGGSGANFIVEW 92 (125)
T ss_pred CceEeEEEEEEEEcCCCCCCEEEEEEE---EECCCCeEhHHhcCCCeEcCCCceEEEEEecccCCCCccceEEEEE
Confidence 356778999999999998777655432 34 455665555568888888888765432333333444444444
No 15
>PF09624 DUF2393: Protein of unknown function (DUF2393); InterPro: IPR013417 The function of this protein is unknown. It is always found as part of a two-gene operon with IPR013416 from INTERPRO, a protein that appears to span the membrane seven times. It has so far been found in the bacteria Anabaena sp. (strain PCC 7120), Agrobacterium tumefaciens, Rhizobium meliloti, and Gloeobacter violaceus.
Probab=57.52 E-value=58 Score=24.27 Aligned_cols=64 Identities=13% Similarity=0.088 Sum_probs=41.3
Q ss_pred hheeeEeeC--CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC
Q 041808 23 LILWLSLRP--KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP 97 (197)
Q Consensus 23 li~~lvlrP--~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp 97 (197)
+++|.++.. +.|+.++.+.+- +. .+-.+.+..+++|-.+ ..+..=.+++.+..++...++....
T Consensus 35 ~~~~~~l~~~~~~~~~~~~~~~~--l~--------~~~~~~v~g~V~N~g~-~~i~~c~i~~~l~~~~~~~~n~~~~ 100 (149)
T PF09624_consen 35 FFGYYWLDKYLKKIELTLTSQKR--LQ--------YSESFYVDGTVTNTGK-FTIKKCKITVKLYNDKQVSGNKFKE 100 (149)
T ss_pred HHHHHHHhhhcCCceEEEeeeee--ee--------eccEEEEEEEEEECCC-CEeeEEEEEEEEEeCCCccCchhhh
Confidence 444444444 456666655533 32 2456788899999988 6888888888888866555554443
No 16
>PF08113 CoxIIa: Cytochrome c oxidase subunit IIa family; InterPro: IPR012538 This family consists of the cytochrome c oxidase subunit IIa family. The bax-type cytochrome c oxidase from Thermus thermophilus is known as a two subunit enzyme. From its crystal structure, it was discovered that an additional transmembrane helix, subunit IIa, spans the membrane. This subunit consists of 34 residues forming one helix across the membrane. The presence of this subunit seems to be important for the function of cytochrome c oxidases [].; PDB: 2QPD_C 3QJR_C 3EH5_C 3BVD_C 3S39_C 3QJU_C 3QJS_C 4EV3_C 3QJT_C 4FA7_C ....
Probab=54.56 E-value=8.3 Score=21.64 Aligned_cols=17 Identities=29% Similarity=0.682 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHhheee
Q 041808 11 LLQIVGLLGLIALILWL 27 (197)
Q Consensus 11 ~~~~i~~~~i~~li~~l 27 (197)
.++++.++++.++++|+
T Consensus 8 al~vv~iLt~~ILvFWf 24 (34)
T PF08113_consen 8 ALGVVMILTAFILVFWF 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHH
Confidence 34566677788888885
No 17
>KOG3927 consensus Na+/K+ ATPase, beta subunit [Inorganic ion transport and metabolism]
Probab=48.31 E-value=22 Score=30.28 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=19.2
Q ss_pred HHHHHHHhheee---EeeCCCCEEEEEEEEecceeCC
Q 041808 16 GLLGLIALILWL---SLRPKNPTVTVVELTIPPIGDS 49 (197)
Q Consensus 16 ~~~~i~~li~~l---vlrP~~P~~~V~s~~l~~~~~~ 49 (197)
++.+++++.+|+ .+-|+.|.+. ++..=..+.+.
T Consensus 57 ~la~lf~~~~~~~~~tidp~~P~~~-~~~~~PGl~~~ 92 (300)
T KOG3927|consen 57 VLAALFAGCMWFMLQTIDPKVPKYK-DSGANPGLSFR 92 (300)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccc-ccCCCCceeec
Confidence 444445555554 4789999999 55322334443
No 18
>PF04790 Sarcoglycan_1: Sarcoglycan complex subunit protein; InterPro: IPR006875 The dystrophin glycoprotein complex (DGC) is a membrane-spanning complex that links the interior cytoskeleton to the extracellular matrix in muscle. The sarcoglycan complex is a subcomplex within the DGC and is composed of several muscle-specific, transmembrane proteins (alpha-, beta-, gamma-, delta- and zeta-sarcoglycan). The sarcoglycans are asparagine-linked glycosylated proteins with single transmembrane domains. This family contains beta, gamma and delta members [, ].; GO: 0007010 cytoskeleton organization, 0016012 sarcoglycan complex, 0016021 integral to membrane
Probab=47.65 E-value=1.7e+02 Score=24.51 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=8.5
Q ss_pred EEEEEEEcCCCe
Q 041808 61 SFALEVENPNKD 72 (197)
Q Consensus 61 ~~~l~~~NPN~~ 72 (197)
++++.++|+|..
T Consensus 89 ~v~~~~r~~~g~ 100 (264)
T PF04790_consen 89 NVTLNARNENGS 100 (264)
T ss_pred ceEEEEecCCCc
Confidence 456777888875
No 19
>PRK06531 yajC preprotein translocase subunit YajC; Validated
Probab=46.61 E-value=12 Score=27.28 Aligned_cols=13 Identities=8% Similarity=0.227 Sum_probs=8.3
Q ss_pred HhheeeEeeCCCC
Q 041808 22 ALILWLSLRPKNP 34 (197)
Q Consensus 22 ~li~~lvlrP~~P 34 (197)
+.++|+.+||+.=
T Consensus 13 ~~i~yf~iRPQkK 25 (113)
T PRK06531 13 LGLIFFMQRQQKK 25 (113)
T ss_pred HHHHHheechHHH
Confidence 3445667999754
No 20
>PF05170 AsmA: AsmA family; InterPro: IPR007844 The AsmA protein is involved in the assembly of outer membrane proteins in Escherichia coli []. AsmA mutations were isolated as extragenic suppressors of an OmpF assembly mutant []. AsmA may have a role in LPS biogenesis [].
Probab=46.47 E-value=96 Score=28.62 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=36.2
Q ss_pred EEcceEEEEEECCeEeeecccCCeeecCCCeeEEEEeeeeeCchhhHHHhcccccCceEEEEEEEEEEE
Q 041808 76 NFDDIILTFLFGQDAAATDTVPSFDLDKNKDREIRGQSVNINGRSWKSLRSSISKNGTALLKVDFATKF 144 (197)
Q Consensus 76 ~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~~~~~~v~l~~~~~~~l~~d~~~~g~v~l~v~~~~~v 144 (197)
.-+++.+.+ |+|..=|++.+..-.+++.-+-..+++++++.+-.......+.. .|...++++++++.
T Consensus 469 ~l~~l~~~l-~~G~~~~~~~ld~~~~~~~~~~~~~~~~v~l~~Ll~~~~~~~~l-~G~~~~~~~l~g~G 535 (604)
T PF05170_consen 469 TLDPLSAKL-YGGSLSGSASLDARQDPPQYSLNLNLRGVQLQPLLQDLALPDPL-SGTGDLNLDLTGQG 535 (604)
T ss_pred EEeeeeEec-CCcEEEEEEEEeccCCCccEEEeeeeCCcchHHHHhhhccccCc-eEEEEEEEEEEeCC
Confidence 334555555 88888888888754444444444445556654321111222334 67776666665543
No 21
>PF12505 DUF3712: Protein of unknown function (DUF3712); InterPro: IPR022185 This domain family is found in eukaryotes, and is approximately 130 amino acids in length.
Probab=45.26 E-value=56 Score=23.65 Aligned_cols=27 Identities=19% Similarity=0.392 Sum_probs=20.1
Q ss_pred cceEEEEEEEEEcCCCeeEEEEcceEEE
Q 041808 56 SNGTLSFALEVENPNKDSSINFDDIILT 83 (197)
Q Consensus 56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~ 83 (197)
-..++..++.+.||.. +++..+++.+.
T Consensus 98 ~g~~~~~~~~l~NPS~-~ti~lG~v~~~ 124 (125)
T PF12505_consen 98 DGINLNATVTLPNPSP-LTIDLGNVTLN 124 (125)
T ss_pred CcEEEEEEEEEcCCCe-EEEEeccEEEe
Confidence 3556777888999988 78877776654
No 22
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=44.63 E-value=1.3e+02 Score=22.27 Aligned_cols=58 Identities=17% Similarity=0.175 Sum_probs=41.2
Q ss_pred EEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEE-ECCeEeeeccc
Q 041808 36 VTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFL-FGQDAAATDTV 96 (197)
Q Consensus 36 ~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~-Y~g~~lg~~~v 96 (197)
-.++.+++++..+...+ ..+..+.++.+++|... ....|-.+++++. -+|+.+.+-.+
T Consensus 48 ~~~~~l~i~~~~~~~~~--~~~~~l~v~g~i~N~~~-~~~~~P~l~l~L~D~~g~~l~~r~~ 106 (149)
T PF11906_consen 48 RDIDALKIESSDLRPVP--DGPGVLVVSGTIRNRAD-FPQALPALELSLLDAQGQPLARRVF 106 (149)
T ss_pred cCcceEEEeeeeEEeec--CCCCEEEEEEEEEeCCC-CcccCceEEEEEECCCCCEEEEEEE
Confidence 35555555444433211 24667888999999998 7999999999998 57888887555
No 23
>PRK05529 cell division protein FtsQ; Provisional
Probab=44.51 E-value=47 Score=27.42 Aligned_cols=15 Identities=7% Similarity=0.175 Sum_probs=12.2
Q ss_pred CCEEEEEEEEeccee
Q 041808 33 NPTVTVVELTIPPIG 47 (197)
Q Consensus 33 ~P~~~V~s~~l~~~~ 47 (197)
.|.|.|.++.++.-.
T Consensus 58 Sp~~~v~~I~V~Gn~ 72 (255)
T PRK05529 58 SPLLALRSIEVAGNM 72 (255)
T ss_pred CCceEEEEEEEECCc
Confidence 689999999998543
No 24
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=42.28 E-value=52 Score=25.40 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=11.3
Q ss_pred chhhHHHHHHHHHHHHHHHhhee
Q 041808 4 TRNFYLWLLQIVGLLGLIALILW 26 (197)
Q Consensus 4 ~r~~c~~~~~~i~~~~i~~li~~ 26 (197)
.|++++++++++++.++++|+++
T Consensus 6 ~rRl~~v~~~~~~~~~a~~Lvl~ 28 (159)
T PRK13150 6 KNRLWVVCAVLAGLGLTTALVLY 28 (159)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666555544444444444443
No 25
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=37.68 E-value=17 Score=27.90 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=15.1
Q ss_pred HHHHHHHHHhheeeEeeCCCCE
Q 041808 14 IVGLLGLIALILWLSLRPKNPT 35 (197)
Q Consensus 14 ~i~~~~i~~li~~lvlrP~~P~ 35 (197)
..++++++++++|+..|++.-.
T Consensus 60 g~ill~il~lvf~~c~r~kktd 81 (154)
T PF04478_consen 60 GPILLGILALVFIFCIRRKKTD 81 (154)
T ss_pred HHHHHHHHHhheeEEEecccCc
Confidence 3455667777778888887643
No 26
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=36.43 E-value=1e+02 Score=23.64 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=11.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhee
Q 041808 4 TRNFYLWLLQIVGLLGLIALILW 26 (197)
Q Consensus 4 ~r~~c~~~~~~i~~~~i~~li~~ 26 (197)
.|++++++++++.+.++++|+++
T Consensus 6 ~rRl~~v~~~~~~~~~a~~Lv~~ 28 (155)
T PRK13159 6 KQRLWLVIGVLTAAALAVTLIVL 28 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666555555544444445444
No 27
>PF09911 DUF2140: Uncharacterized protein conserved in bacteria (DUF2140); InterPro: IPR018672 This family of conserved hypothetical proteins has no known function.
Probab=35.14 E-value=54 Score=25.83 Aligned_cols=19 Identities=16% Similarity=0.480 Sum_probs=12.3
Q ss_pred HHHHHHHhheeeEeeCCCC
Q 041808 16 GLLGLIALILWLSLRPKNP 34 (197)
Q Consensus 16 ~~~~i~~li~~lvlrP~~P 34 (197)
+++++++.++..+++|+.|
T Consensus 13 ~~l~~~~~~~~~~~~~~~~ 31 (187)
T PF09911_consen 13 LNLAFVIVVFFRLFQPSEP 31 (187)
T ss_pred HHHHHHhheeeEEEccCCC
Confidence 3444455666678889876
No 28
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=34.48 E-value=22 Score=18.67 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhheeeEeeCCC
Q 041808 13 QIVGLLGLIALILWLSLRPKN 33 (197)
Q Consensus 13 ~~i~~~~i~~li~~lvlrP~~ 33 (197)
..++.+++.+.+++-.++|.+
T Consensus 4 ~~~v~~~L~~YL~~aLl~PEr 24 (25)
T PF09604_consen 4 GGIVAVALFVYLFYALLRPER 24 (25)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 344445555555555677753
No 29
>PF06092 DUF943: Enterobacterial putative membrane protein (DUF943); InterPro: IPR010351 This family consists of several hypothetical proteins from Escherichia coli, Yersinia pestis and Salmonella typhi.
Probab=34.01 E-value=30 Score=26.62 Aligned_cols=18 Identities=50% Similarity=0.846 Sum_probs=11.8
Q ss_pred HHHHHHHHhheeeEeeCC
Q 041808 15 VGLLGLIALILWLSLRPK 32 (197)
Q Consensus 15 i~~~~i~~li~~lvlrP~ 32 (197)
++++++++.++|+.+||-
T Consensus 12 l~l~~~~~y~~W~~~rpV 29 (157)
T PF06092_consen 12 LFLLACILYFLWLTLRPV 29 (157)
T ss_pred HHHHHHHHHhhhhccCCe
Confidence 344444448888888884
No 30
>PF10907 DUF2749: Protein of unknown function (DUF2749); InterPro: IPR024475 This bacterial family of proteins represent the TrbJ and TrbK genes of the Ti plasmid conjugative transfer operon [].
Probab=33.16 E-value=50 Score=21.51 Aligned_cols=14 Identities=14% Similarity=0.560 Sum_probs=10.5
Q ss_pred HHHHhheeeEeeCC
Q 041808 19 GLIALILWLSLRPK 32 (197)
Q Consensus 19 ~i~~li~~lvlrP~ 32 (197)
+.+..+.|++.+|+
T Consensus 15 a~a~~atwviVq~~ 28 (66)
T PF10907_consen 15 AAAGAATWVIVQPR 28 (66)
T ss_pred hhhceeEEEEECCC
Confidence 33457788899998
No 31
>PRK14762 membrane protein; Provisional
Probab=33.09 E-value=58 Score=17.03 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=9.9
Q ss_pred hHHHHHHHHHHHHHHH
Q 041808 7 FYLWLLQIVGLLGLIA 22 (197)
Q Consensus 7 ~c~~~~~~i~~~~i~~ 22 (197)
+..|++++++++|+..
T Consensus 3 i~lw~i~iifligllv 18 (27)
T PRK14762 3 IILWAVLIIFLIGLLV 18 (27)
T ss_pred eHHHHHHHHHHHHHHH
Confidence 3456677777777643
No 32
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=32.99 E-value=1.5e+02 Score=19.63 Aligned_cols=43 Identities=14% Similarity=0.339 Sum_probs=28.0
Q ss_pred cceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccCCeee
Q 041808 56 SNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDL 101 (197)
Q Consensus 56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q 101 (197)
..-.+.++++++|.-.. . -++..+.++.+|..++...++++..
T Consensus 17 ~g~~~~i~~~V~N~G~~-~--~~~~~v~~~~~~~~~~~~~i~~L~~ 59 (101)
T PF07705_consen 17 PGEPVTITVTVKNNGTA-D--AENVTVRLYLDGNSVSTVTIPSLAP 59 (101)
T ss_dssp TTSEEEEEEEEEE-SSS----BEEEEEEEEETTEEEEEEEESEB-T
T ss_pred CCCEEEEEEEEEECCCC-C--CCCEEEEEEECCceeccEEECCcCC
Confidence 34567888889997552 2 3456777777888887777755543
No 33
>PF13598 DUF4139: Domain of unknown function (DUF4139)
Probab=32.30 E-value=2.9e+02 Score=23.05 Aligned_cols=43 Identities=7% Similarity=0.097 Sum_probs=30.2
Q ss_pred EEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccCCeeecCCCeeEE
Q 041808 62 FALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDKNKDREI 109 (197)
Q Consensus 62 ~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~~~t~~~ 109 (197)
+..+++|+. ++..-...+.++.+|..+|.+.++. .+++....+
T Consensus 170 l~a~~~n~~---~~~L~~G~~~v~~dg~~vG~~~l~~--~~~ge~~~l 212 (317)
T PF13598_consen 170 LVARFKNTS---GLPLLPGPVSVYRDGTFVGESRLPH--TAPGEEFEL 212 (317)
T ss_pred EEEEEECCC---CCcccCCcEEEEECCEEEEeeecCC--CCCCCEEEE
Confidence 345677774 4555678999999999999999986 334444444
No 34
>PRK14759 potassium-transporting ATPase subunit F; Provisional
Probab=30.81 E-value=29 Score=18.88 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhheeeEeeCCC
Q 041808 13 QIVGLLGLIALILWLSLRPKN 33 (197)
Q Consensus 13 ~~i~~~~i~~li~~lvlrP~~ 33 (197)
..++.+++.+.+++-.+||..
T Consensus 8 ~~~va~~L~vYL~~ALlrPEr 28 (29)
T PRK14759 8 AGAVSLGLLIYLTYALLRPER 28 (29)
T ss_pred HHHHHHHHHHHHHHHHhCccc
Confidence 444455555555555678853
No 35
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=30.41 E-value=57 Score=20.58 Aligned_cols=13 Identities=31% Similarity=0.835 Sum_probs=8.2
Q ss_pred HHHhheeeEeeCC
Q 041808 20 LIALILWLSLRPK 32 (197)
Q Consensus 20 i~~li~~lvlrP~ 32 (197)
++++++|+.-||+
T Consensus 44 ~Ivv~vy~kTRP~ 56 (56)
T PF15012_consen 44 FIVVFVYLKTRPR 56 (56)
T ss_pred HHhheeEEeccCC
Confidence 3446667777774
No 36
>PF06129 Chordopox_G3: Chordopoxvirus G3 protein; InterPro: IPR010367 This family consists of several poxvirus specific G3 proteins. The function of this family is unknown.
Probab=30.16 E-value=94 Score=22.43 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=17.3
Q ss_pred EEEEEEEEcCCC----eeEEEEcce--EEEEEECCe
Q 041808 60 LSFALEVENPNK----DSSINFDDI--ILTFLFGQD 89 (197)
Q Consensus 60 l~~~l~~~NPN~----~~~i~Y~~~--~~~v~Y~g~ 89 (197)
..-++-+.|||. .+..+||+. .+.+.|+|.
T Consensus 51 ~~~t~lF~~~~~~~~~~v~l~Yds~~~~Vtv~~~~~ 86 (109)
T PF06129_consen 51 LLNTVLFLNPDKPVSSQVILYYDSRSGTVTVAYKNK 86 (109)
T ss_pred ceeeEEecCCCcccccceEEEEccCCCeEEEEECCc
Confidence 333566778873 356677643 456666553
No 37
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=29.94 E-value=1.9e+02 Score=26.95 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=24.1
Q ss_pred CCEEEEEEEEecceeCCCCCCCCcceEEEE-EEEEEcCCCe--eEEEEcceEEEEE
Q 041808 33 NPTVTVVELTIPPIGDSSSPADDSNGTLSF-ALEVENPNKD--SSINFDDIILTFL 85 (197)
Q Consensus 33 ~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~-~l~~~NPN~~--~~i~Y~~~~~~v~ 85 (197)
--+++|.+++++-|. ..+++ .+++.||... --+..+++.+.+.
T Consensus 42 GreV~Ig~V~lslfp----------l~l~i~gl~Vanp~~~~~~~~~i~~i~~~v~ 87 (555)
T TIGR03545 42 GAKVEIAQVDTGLFP----------LQLSIQGLQVTDPDKPMRNLFEIDRINASLD 87 (555)
T ss_pred CCeEEEeEEEeeecC----------CeEEEeeEEEeCCCCCCCCeEEeeEEEEEec
Confidence 345667666554331 22333 3677888742 1367777777654
No 38
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=29.83 E-value=85 Score=22.08 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=13.6
Q ss_pred hhHHHHHHHHHHHHHHHhheeeE-ee
Q 041808 6 NFYLWLLQIVGLLGLIALILWLS-LR 30 (197)
Q Consensus 6 ~~c~~~~~~i~~~~i~~li~~lv-lr 30 (197)
.++..+++++.++.++.+|.|++ +|
T Consensus 63 iili~lls~v~IlVily~IyYFVILR 88 (101)
T PF06024_consen 63 IILISLLSFVCILVILYAIYYFVILR 88 (101)
T ss_pred chHHHHHHHHHHHHHHhhheEEEEEe
Confidence 34445555555555555666665 44
No 39
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=27.98 E-value=30 Score=25.50 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhheeeEeeC-CCCEEEEEE
Q 041808 11 LLQIVGLLGLIALILWLSLRP-KNPTVTVVE 40 (197)
Q Consensus 11 ~~~~i~~~~i~~li~~lvlrP-~~P~~~V~s 40 (197)
+-+++.++|++++|.|++-|- |.+...++.
T Consensus 71 ~gv~aGvIg~Illi~y~irR~~Kk~~~~~~p 101 (122)
T PF01102_consen 71 FGVMAGVIGIILLISYCIRRLRKKSSSDVQP 101 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCC
Confidence 334445556666777766433 334444443
No 40
>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]
Probab=27.33 E-value=75 Score=22.92 Aligned_cols=12 Identities=42% Similarity=0.650 Sum_probs=9.4
Q ss_pred EEEEEcCCCeeE
Q 041808 63 ALEVENPNKDSS 74 (197)
Q Consensus 63 ~l~~~NPN~~~~ 74 (197)
.++++|||.+..
T Consensus 90 ~F~~~NPNA~~~ 101 (110)
T COG0316 90 GFTFKNPNAKSS 101 (110)
T ss_pred ceEEECCCCCcc
Confidence 479999998653
No 41
>PF09865 DUF2092: Predicted periplasmic protein (DUF2092); InterPro: IPR019207 This entry represents various hypothetical prokaryotic proteins of unknown function.
Probab=27.21 E-value=3.3e+02 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=28.7
Q ss_pred CcceEEEEEEEEEcCCCeeEEEEc--ceEEEEEECCeEee
Q 041808 55 DSNGTLSFALEVENPNKDSSINFD--DIILTFLFGQDAAA 92 (197)
Q Consensus 55 ~l~~~l~~~l~~~NPN~~~~i~Y~--~~~~~v~Y~g~~lg 92 (197)
.+...-+.++.++=||+ +.+.+. ..+..++|+|..+-
T Consensus 36 klq~~~~~~v~v~RPdk-lr~~~~gd~~~~~~~yDGkt~T 74 (214)
T PF09865_consen 36 KLQFSSSGTVTVQRPDK-LRIDRRGDGADREFYYDGKTFT 74 (214)
T ss_pred eEEEEEEEEEEEeCCCe-EEEEEEcCCcceEEEECCCEEE
Confidence 35566677899999998 999983 45788899987654
No 42
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=26.23 E-value=17 Score=19.26 Aligned_cols=20 Identities=30% Similarity=0.610 Sum_probs=11.1
Q ss_pred HHHHHHHHHhheeeEeeCCC
Q 041808 14 IVGLLGLIALILWLSLRPKN 33 (197)
Q Consensus 14 ~i~~~~i~~li~~lvlrP~~ 33 (197)
.++.+++.+.++|-.+||.+
T Consensus 4 ~~l~~~L~~YL~~aLl~PEr 23 (26)
T TIGR02115 4 LVLAVGLFIYLFYALLRPER 23 (26)
T ss_pred HHHHHHHHHHHHHHHhCHHh
Confidence 34445555555555677754
No 43
>COG1589 FtsQ Cell division septal protein [Cell envelope biogenesis, outer membrane]
Probab=25.78 E-value=93 Score=25.77 Aligned_cols=33 Identities=18% Similarity=0.378 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhheeeEeeCCCCEEEEEEEEecc
Q 041808 13 QIVGLLGLIALILWLSLRPKNPTVTVVELTIPP 45 (197)
Q Consensus 13 ~~i~~~~i~~li~~lvlrP~~P~~~V~s~~l~~ 45 (197)
..+.++++.++++|...-+..|.|.+..+.+++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~v~G 69 (269)
T COG1589 37 LYLVLLLLVLVVLWVLILLSLPYFPIRKVSVSG 69 (269)
T ss_pred HHHHHHHHHHHHHheehhhhcCCccceEEEEec
Confidence 344455556677888888999999999999986
No 44
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=25.54 E-value=35 Score=19.66 Aligned_cols=11 Identities=36% Similarity=1.081 Sum_probs=5.7
Q ss_pred HHHhheeeEee
Q 041808 20 LIALILWLSLR 30 (197)
Q Consensus 20 i~~li~~lvlr 30 (197)
+...|+|+++.
T Consensus 23 imliif~f~le 33 (43)
T PF11395_consen 23 IMLIIFWFSLE 33 (43)
T ss_pred HHHHHHHHHHh
Confidence 33455676543
No 45
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=24.78 E-value=79 Score=25.62 Aligned_cols=19 Identities=11% Similarity=0.259 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHhh
Q 041808 6 NFYLWLLQIVGLLGLIALI 24 (197)
Q Consensus 6 ~~c~~~~~~i~~~~i~~li 24 (197)
.+|.++++++++++.+.|+
T Consensus 131 LIClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 131 LICLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4567777777776665543
No 46
>PF13396 PLDc_N: Phospholipase_D-nuclease N-terminal
Probab=24.00 E-value=1.1e+02 Score=17.80 Aligned_cols=16 Identities=31% Similarity=0.521 Sum_probs=10.3
Q ss_pred HHHHHHhheeeEeeCC
Q 041808 17 LLGLIALILWLSLRPK 32 (197)
Q Consensus 17 ~~~i~~li~~lvlrP~ 32 (197)
++-++..++|++++++
T Consensus 31 ~~P~iG~i~Yl~~gr~ 46 (46)
T PF13396_consen 31 FFPIIGPILYLIFGRK 46 (46)
T ss_pred HHHHHHHhheEEEeCC
Confidence 3556667778777653
No 47
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=23.13 E-value=1.1e+02 Score=22.49 Aligned_cols=8 Identities=0% Similarity=0.214 Sum_probs=4.2
Q ss_pred EEEEEECC
Q 041808 81 ILTFLFGQ 88 (197)
Q Consensus 81 ~~~v~Y~g 88 (197)
++.|.|.|
T Consensus 83 ~i~V~Y~G 90 (131)
T PF03100_consen 83 EIPVVYTG 90 (131)
T ss_dssp EEEEEEES
T ss_pred EEEEEECC
Confidence 45555554
No 48
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.93 E-value=42 Score=20.18 Aligned_cols=11 Identities=36% Similarity=0.570 Sum_probs=5.9
Q ss_pred hheeeEeeCCC
Q 041808 23 LILWLSLRPKN 33 (197)
Q Consensus 23 li~~lvlrP~~ 33 (197)
.+++.+++|+.
T Consensus 24 gi~~w~~~~~~ 34 (49)
T PF05545_consen 24 GIVIWAYRPRN 34 (49)
T ss_pred HHHHHHHcccc
Confidence 33344567763
No 49
>PRK05886 yajC preprotein translocase subunit YajC; Validated
Probab=22.85 E-value=38 Score=24.44 Aligned_cols=11 Identities=9% Similarity=0.422 Sum_probs=6.6
Q ss_pred heeeEeeCCCC
Q 041808 24 ILWLSLRPKNP 34 (197)
Q Consensus 24 i~~lvlrP~~P 34 (197)
..|+.+||+.=
T Consensus 17 ~yF~~iRPQkK 27 (109)
T PRK05886 17 FMYFASRRQRK 27 (109)
T ss_pred HHHHHccHHHH
Confidence 33456899743
No 50
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.11 E-value=1.2e+02 Score=18.16 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhheeeEeeCC
Q 041808 11 LLQIVGLLGLIALILWLSLRPK 32 (197)
Q Consensus 11 ~~~~i~~~~i~~li~~lvlrP~ 32 (197)
+.+..+++++....+|..|.|.
T Consensus 9 i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 9 IFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred HHHHHHHHHHHhhhhhheeCCC
Confidence 4455567788888888888763
No 51
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=20.85 E-value=93 Score=28.73 Aligned_cols=27 Identities=19% Similarity=0.280 Sum_probs=14.2
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeEeeC
Q 041808 5 RNFYLWLLQIVGLLGLIALILWLSLRP 31 (197)
Q Consensus 5 r~~c~~~~~~i~~~~i~~li~~lvlrP 31 (197)
+-+|.++++++++.+++.|+.-++|++
T Consensus 478 K~LWIsvAliVLLAaLlSfLtg~~fq~ 504 (538)
T PF05781_consen 478 KVLWISVALIVLLAALLSFLTGLFFQR 504 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 455666655555555554555455544
No 52
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=20.70 E-value=82 Score=22.03 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=8.5
Q ss_pred HHHHHHHHhheeeE-ee
Q 041808 15 VGLLGLIALILWLS-LR 30 (197)
Q Consensus 15 i~~~~i~~li~~lv-lr 30 (197)
+++.+++.+++|++ +|
T Consensus 77 ~~v~~lv~~l~w~f~~r 93 (96)
T PTZ00382 77 AVVGGLVGFLCWWFVCR 93 (96)
T ss_pred hHHHHHHHHHhheeEEe
Confidence 34445555666654 44
No 53
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=20.60 E-value=52 Score=23.72 Aligned_cols=17 Identities=41% Similarity=0.823 Sum_probs=9.2
Q ss_pred HhheeeEe--eCCCCEEEE
Q 041808 22 ALILWLSL--RPKNPTVTV 38 (197)
Q Consensus 22 ~li~~lvl--rP~~P~~~V 38 (197)
++++||++ +-..|.|.|
T Consensus 10 ~li~~Lv~~~r~~~~vf~i 28 (108)
T PF12321_consen 10 ALIFWLVFVDRRGLPVFEI 28 (108)
T ss_pred HHHHHHHHccccCceEEEE
Confidence 36677653 333466643
No 54
>PF07509 DUF1523: Protein of unknown function (DUF1523); InterPro: IPR011088 This entry is represented by Bacteriophage phiNM3, A0EWY4 from SWISSPROT. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The members of this family are restricted to the Gammaproteobacteria and Epsilonproteobacteria, the function of these proteins is unknown.
Probab=20.15 E-value=4.4e+02 Score=20.71 Aligned_cols=21 Identities=10% Similarity=0.134 Sum_probs=16.1
Q ss_pred eeCCCCEEEEEEEEecceeCC
Q 041808 29 LRPKNPTVTVVELTIPPIGDS 49 (197)
Q Consensus 29 lrP~~P~~~V~s~~l~~~~~~ 49 (197)
..|+.=..+|.+..+.+.+++
T Consensus 24 ~lP~~dvvrItgtevkR~d~~ 44 (175)
T PF07509_consen 24 TLPQYDVVRITGTEVKRMDLD 44 (175)
T ss_pred cCCcceEEEEeceEEEEecCC
Confidence 458888888888888877554
Done!