Query 041808
Match_columns 197
No_of_seqs 133 out of 758
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 18:39:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041808.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041808hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1yyc_A LEA protein, putative l 98.5 1.3E-06 4.5E-11 67.3 11.9 102 32-142 43-145 (174)
2 1xo8_A AT1G01470; structural g 98.3 6.5E-07 2.2E-11 67.5 5.7 103 32-143 20-123 (151)
3 3but_A Uncharacterized protein 97.5 0.0014 4.7E-08 48.3 11.3 55 56-111 16-71 (136)
4 3s8f_C Cytochrome C oxidase po 37.3 14 0.00048 20.1 1.2 17 11-27 8-24 (34)
5 2l0d_A Cell surface protein; s 33.6 1.2E+02 0.004 20.9 8.3 45 56-103 17-61 (114)
6 2knc_B Integrin beta-3; transm 31.3 30 0.001 22.4 2.4 17 10-26 16-32 (79)
7 1nrp_R Receptor based peptide 30.0 8.4 0.00029 19.0 -0.4 14 64-77 6-19 (26)
8 1nro_R Receptor based peptide 27.7 13 0.00043 18.5 -0.0 14 64-77 6-19 (27)
9 2k9j_B Integrin beta-3; transm 25.1 45 0.0015 18.9 2.1 16 11-26 16-31 (43)
10 3p5s_A CD38 molecule; cyclic A 20.8 21 0.00071 28.9 0.0 29 5-33 9-37 (278)
No 1
>1yyc_A LEA protein, putative late embryogenesis abundant protein; structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana}
Probab=98.53 E-value=1.3e-06 Score=67.26 Aligned_cols=102 Identities=17% Similarity=0.147 Sum_probs=80.7
Q ss_pred CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeEEE
Q 041808 32 KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDREIR 110 (197)
Q Consensus 32 ~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~~~ 110 (197)
+.|++++.++++.+++. ..+++.+.++++|||. ..+.+..++..+.-+|..++++..+ ++..++++++.+.
T Consensus 43 ~~PeV~v~~v~~~~~~l-------~~~~~~l~LrV~NPN~-~pLpi~gi~Y~L~vnG~~lasG~s~~~~tIpa~g~~~v~ 114 (174)
T 1yyc_A 43 PTPEATVDDVDFKGVTR-------DGVDYHAKVSVKNPYS-QSIPICQISYILKSATRTIASGTIPDPGSLVGSGTTVLD 114 (174)
T ss_dssp CCCEEEEEEEEEEEECS-------SSEEEEEEEEEEECSS-SCCBCCSEEEEEEESSSCEEEEEESCCCBCCSSEEEEEE
T ss_pred CCCEEEEEEeEEecccc-------ceEEEEEEEEEECCCC-CCccccceEEEEEECCEEEEEEecCCCceECCCCcEEEE
Confidence 78999999999987754 3588999999999999 8999999999999999999999997 6899999999988
Q ss_pred EeeeeeCchhhHHHhcccccCceEEEEEEEEE
Q 041808 111 GQSVNINGRSWKSLRSSISKNGTALLKVDFAT 142 (197)
Q Consensus 111 ~~~v~l~~~~~~~l~~d~~~~g~v~l~v~~~~ 142 (197)
.. +.++.....++.+++...+.++.+++...
T Consensus 115 Vp-v~v~~~~l~~~~~~l~~~~~i~Y~L~g~L 145 (174)
T 1yyc_A 115 VP-VKVAYSIAVSLMKDMCTDWDIDYQLDIGL 145 (174)
T ss_dssp EE-EEESHHHHHHTCCCCCSSEEECEEEEEEE
T ss_pred EE-EEEEHHHHHHHHHhcCCCCccceEEEEEE
Confidence 52 44544444555566653556666555533
No 2
>1xo8_A AT1G01470; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, unknown function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Probab=98.34 E-value=6.5e-07 Score=67.51 Aligned_cols=103 Identities=14% Similarity=0.147 Sum_probs=77.8
Q ss_pred CCCEEEEEEEEecceeCCCCCCCCcceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccC-CeeecCCCeeEEE
Q 041808 32 KNPTVTVVELTIPPIGDSSSPADDSNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVP-SFDLDKNKDREIR 110 (197)
Q Consensus 32 ~~P~~~V~s~~l~~~~~~~~~~~~l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp-~f~q~~~~t~~~~ 110 (197)
+.|++++.++++.+++. ...++.+.++++|||. ..+.++.++..+.-+|..++++..+ ++..++++++.+.
T Consensus 20 ~~P~v~v~~v~~~~~~~-------~~~~~~~~l~V~NPN~-~~lpi~gi~y~l~vng~~lasG~~~~~~~ipa~g~~~v~ 91 (151)
T 1xo8_A 20 PKPEGSVTDVDLKDVNR-------DSVEYLAKVSVTNPYS-HSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMTALD 91 (151)
T ss_dssp CSCCCBCSEEEECCCTT-------TEECEEEEEEEECSSS-SCCCCEEEEEEEESSSSCEEEEEEEECCCCSSSSEEEEE
T ss_pred CCCEEEEEEeEEeccCc-------ceeEEEEEEEEECCCC-CCcccccEEEEEEECCEEEEEEecCCCcEECCCCcEEEE
Confidence 68999999999877643 4678999999999999 8999999999999999999999996 7899999999987
Q ss_pred EeeeeeCchhhHHHhcccccCceEEEEEEEEEE
Q 041808 111 GQSVNINGRSWKSLRSSISKNGTALLKVDFATK 143 (197)
Q Consensus 111 ~~~v~l~~~~~~~l~~d~~~~g~v~l~v~~~~~ 143 (197)
.. +.++.....++..++...+.++.+++....
T Consensus 92 vp-v~v~~~~l~~~~~~l~~~~~i~Y~l~g~l~ 123 (151)
T 1xo8_A 92 IP-VVVPYSILFNLARDVGVDWDIDYELQIGLT 123 (151)
T ss_dssp EC-CCEEHHHHHHHHHHHHHHSEEEEEEEEEEE
T ss_pred EE-EEEEHHHHHHHHHhcccCCcccEEEEEEEE
Confidence 42 233323333444444325567766655443
No 3
>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}
Probab=97.55 E-value=0.0014 Score=48.30 Aligned_cols=55 Identities=11% Similarity=0.038 Sum_probs=49.3
Q ss_pred cceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeeccc-CCeeecCCCeeEEEE
Q 041808 56 SNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTV-PSFDLDKNKDREIRG 111 (197)
Q Consensus 56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~v-p~f~q~~~~t~~~~~ 111 (197)
-...+.+.+++.|||. ..+.++.++..+...|..+|++.. ..+..++.+++.+..
T Consensus 16 ~~t~~~~~l~V~NPN~-~~l~i~gl~y~v~lng~~la~G~s~~~~~I~~~g~~~v~v 71 (136)
T 3but_A 16 SQTEIVALAKVRNEDV-VPIVVSGYHYTIEMNGVKVADGYENSPVTVKPASATTLKF 71 (136)
T ss_dssp SEEEEEEEEEEECCSS-SCEEEEEEEEEEEETTEEEEEEEECCCEEECTTCEEEEEE
T ss_pred cEEEEEEEEEEeCCCC-cceeeeceEEEEEECCEEEEeeeecCceEECCCCcEEEEE
Confidence 4678999999999998 899999999999999999999875 689999999888774
No 4
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=37.31 E-value=14 Score=20.09 Aligned_cols=17 Identities=35% Similarity=0.765 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhheee
Q 041808 11 LLQIVGLLGLIALILWL 27 (197)
Q Consensus 11 ~~~~i~~~~i~~li~~l 27 (197)
.++.++++|+.++++|+
T Consensus 8 Tl~~V~ilg~~I~i~W~ 24 (34)
T 3s8f_C 8 ALAVILVLTLTILVFWL 24 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHHHH
Confidence 34566677777777774
No 5
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=33.57 E-value=1.2e+02 Score=20.91 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=32.1
Q ss_pred cceEEEEEEEEEcCCCeeEEEEcceEEEEEECCeEeeecccCCeeecC
Q 041808 56 SNGTLSFALEVENPNKDSSINFDDIILTFLFGQDAAATDTVPSFDLDK 103 (197)
Q Consensus 56 l~~~l~~~l~~~NPN~~~~i~Y~~~~~~v~Y~g~~lg~~~vp~f~q~~ 103 (197)
-+...++++.++|.-.... .++.+.++.+|..++...+++..-|.
T Consensus 17 ~~~~~ti~atVkN~G~~~a---~~~~V~ly~~g~~v~t~~v~~LaaG~ 61 (114)
T 2l0d_A 17 PNTVNTMTATIENQGNKDS---TSFNVSLLVDGIVVDTQTVTSLESEN 61 (114)
T ss_dssp TTSEEEEEEEEEECSSSCB---CCEEEEEEETTEEEEEEEESCBCBTC
T ss_pred CCCeEEEEEEEEECCCCCC---CCEEEEEEECCEEEcceecccccCCC
Confidence 3556788889999876332 55778888899999888776644444
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=31.30 E-value=30 Score=22.38 Aligned_cols=17 Identities=35% Similarity=0.804 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhhee
Q 041808 10 WLLQIVGLLGLIALILW 26 (197)
Q Consensus 10 ~~~~~i~~~~i~~li~~ 26 (197)
.+++.++++|++++++|
T Consensus 16 gvi~gilliGllllliw 32 (79)
T 2knc_B 16 SVMGAILLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34555677788777777
No 7
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=30.05 E-value=8.4 Score=18.97 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=9.4
Q ss_pred EEEEcCCCeeEEEE
Q 041808 64 LEVENPNKDSSINF 77 (197)
Q Consensus 64 l~~~NPN~~~~i~Y 77 (197)
+..+|||.|..-.+
T Consensus 6 fllrnpndkyepfw 19 (26)
T 1nrp_R 6 FLLRNPNDKYEPFW 19 (26)
T ss_pred hhhcCCCcccCccc
Confidence 35789999754443
No 8
>1nro_R Receptor based peptide NRP; serine proteinase/receptor; 3.10A {Homo sapiens}
Probab=27.65 E-value=13 Score=18.49 Aligned_cols=14 Identities=21% Similarity=0.330 Sum_probs=9.1
Q ss_pred EEEEcCCCeeEEEE
Q 041808 64 LEVENPNKDSSINF 77 (197)
Q Consensus 64 l~~~NPN~~~~i~Y 77 (197)
+..+|||.+..-.+
T Consensus 6 fllrnpndkyepfw 19 (27)
T 1nro_R 6 FLLRNPNDKYEPFW 19 (27)
T ss_pred ccccCCCcccCccc
Confidence 35789998754333
No 9
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=25.15 E-value=45 Score=18.89 Aligned_cols=16 Identities=38% Similarity=0.922 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHhhee
Q 041808 11 LLQIVGLLGLIALILW 26 (197)
Q Consensus 11 ~~~~i~~~~i~~li~~ 26 (197)
.++.++++|++++++|
T Consensus 16 vi~~ivliGl~lLliw 31 (43)
T 2k9j_B 16 VMGAILLIGLAALLIW 31 (43)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455677788777777
No 10
>3p5s_A CD38 molecule; cyclic ADP ribose, ECTO-ADP-ribosyl cyclase, glycosida hydrolase; HET: NAG AVU; 1.95A {Bos taurus}
Probab=20.83 E-value=21 Score=28.95 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeEeeCCC
Q 041808 5 RNFYLWLLQIVGLLGLIALILWLSLRPKN 33 (197)
Q Consensus 5 r~~c~~~~~~i~~~~i~~li~~lvlrP~~ 33 (197)
|++|..++++++++.++++++-+.+.|+.
T Consensus 9 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~ 37 (278)
T 3p5s_A 9 KKLCWCVLLFFLVAGITGGAIGIYKWHYS 37 (278)
T ss_dssp -----------------------------
T ss_pred eEEeehHHHHHHHHHHHhheeeEEeccCC
Confidence 34444333333333333333444444543
Done!