Query 041810
Match_columns 750
No_of_seqs 163 out of 232
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 10:52:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041810.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041810hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2215 Exocyst complex subuni 100.0 9E-65 2E-69 576.1 30.0 663 23-719 4-673 (673)
2 KOG2346 Uncharacterized conser 100.0 3.8E-30 8.2E-35 278.2 21.6 317 22-387 22-343 (636)
3 PF04124 Dor1: Dor1-like famil 99.8 2.3E-18 5E-23 188.5 31.9 317 43-378 4-336 (338)
4 KOG2215 Exocyst complex subuni 99.7 3.4E-16 7.4E-21 179.9 20.2 335 142-520 282-636 (673)
5 PF08700 Vps51: Vps51/Vps67; 99.7 2.6E-16 5.6E-21 138.9 12.4 86 28-113 1-86 (87)
6 KOG2069 Golgi transport comple 99.7 9.1E-14 2E-18 155.6 32.8 344 29-394 17-376 (581)
7 PF15469 Sec5: Exocyst complex 99.3 1.1E-10 2.4E-15 117.1 16.9 172 67-247 2-182 (182)
8 KOG2033 Low density lipoprotei 99.0 8.3E-05 1.8E-09 85.6 48.9 272 39-322 10-309 (863)
9 KOG2347 Sec5 subunit of exocys 99.0 6.4E-06 1.4E-10 96.7 39.7 615 28-703 166-895 (934)
10 PF06248 Zw10: Centromere/kine 98.9 9.3E-05 2E-09 87.5 46.3 446 46-514 7-530 (593)
11 PF10191 COG7: Golgi complex c 98.6 0.00012 2.7E-09 88.7 36.2 405 24-469 1-442 (766)
12 PF04100 Vps53_N: Vps53-like, 98.6 0.00033 7.2E-09 78.5 36.0 339 31-391 2-383 (383)
13 PF10475 DUF2450: Protein of u 98.5 1.3E-05 2.9E-10 86.5 22.4 220 27-258 7-235 (291)
14 PF06148 COG2: COG (conserved 97.3 0.00013 2.8E-09 69.8 2.6 88 25-115 5-92 (133)
15 KOG2180 Late Golgi protein sor 97.1 1.1 2.3E-05 53.3 37.8 410 22-471 8-466 (793)
16 PF10392 COG5: Golgi transport 97.0 0.0082 1.8E-07 57.5 11.5 90 26-115 1-95 (132)
17 PF04437 RINT1_TIP1: RINT-1 / 96.8 0.19 4.2E-06 58.4 23.0 365 275-685 31-430 (494)
18 KOG2307 Low density lipoprotei 96.5 1.3 2.8E-05 51.2 25.4 93 20-115 20-112 (705)
19 KOG4182 Uncharacterized conser 95.5 6.3 0.00014 45.0 30.6 220 24-256 2-240 (828)
20 KOG3691 Exocyst complex subuni 95.2 0.46 9.9E-06 57.3 15.6 152 49-214 46-205 (982)
21 PF04048 Sec8_exocyst: Sec8 ex 94.9 0.36 7.7E-06 46.9 11.7 123 24-156 12-141 (142)
22 PF03081 Exo70: Exo70 exocyst 87.6 22 0.00048 39.5 16.9 83 416-507 140-234 (371)
23 PF04091 Sec15: Exocyst comple 80.7 95 0.0021 34.1 18.4 57 646-702 218-285 (311)
24 KOG2344 Exocyst component prot 79.1 1.1E+02 0.0024 37.0 18.7 256 218-509 190-477 (623)
25 PF15290 Syntaphilin: Golgi-lo 76.4 14 0.0003 39.6 8.9 48 33-82 54-107 (305)
26 PF01031 Dynamin_M: Dynamin ce 66.9 42 0.00091 36.3 10.5 77 312-394 194-275 (295)
27 PF04420 CHD5: CHD5-like prote 54.9 38 0.00082 33.6 6.9 64 49-115 40-103 (161)
28 KOG2176 Exocyst complex, subun 53.6 5.3E+02 0.011 32.0 49.8 124 50-177 45-170 (800)
29 PF06419 COG6: Conserved oligo 49.7 5.5E+02 0.012 31.1 45.3 76 220-295 190-279 (618)
30 KOG4572 Predicted DNA-binding 49.1 6.2E+02 0.014 31.5 19.3 197 71-323 349-545 (1424)
31 smart00762 Cog4 COG4 transport 41.3 1.7E+02 0.0036 32.4 10.0 89 202-291 5-101 (324)
32 PF06046 Sec6: Exocyst complex 39.5 7E+02 0.015 29.4 18.1 373 240-677 79-472 (566)
33 KOG2163 Centromere/kinetochore 38.5 8E+02 0.017 29.7 15.7 76 415-507 432-508 (719)
34 cd02680 MIT_calpain7_2 MIT: do 37.9 1.3E+02 0.0027 26.3 6.5 51 160-216 19-73 (75)
35 PF04444 Dioxygenase_N: Catech 36.2 56 0.0012 28.4 4.1 50 197-246 3-56 (74)
36 COG2231 Uncharacterized protei 35.1 55 0.0012 34.0 4.5 69 10-82 119-188 (215)
37 COG2959 HemX Uncharacterized e 33.4 7.7E+02 0.017 28.0 16.6 121 49-204 63-188 (391)
38 COG2178 Predicted RNA-binding 33.1 5.8E+02 0.012 26.5 17.0 164 38-212 7-185 (204)
39 PF08318 COG4: COG4 transport 32.8 5.3E+02 0.012 28.5 12.3 85 202-287 5-97 (331)
40 PF08631 SPO22: Meiosis protei 32.7 5.5E+02 0.012 27.4 12.1 187 157-366 3-191 (278)
41 PF04129 Vps52: Vps52 / Sac2 f 32.1 9E+02 0.02 28.5 42.9 74 35-115 6-79 (508)
42 PF09730 BicD: Microtubule-ass 30.5 9.3E+02 0.02 29.8 14.4 76 29-105 244-320 (717)
43 PRK15380 pathogenicity island 29.7 31 0.00067 36.6 1.7 61 551-620 35-100 (319)
44 PF07739 TipAS: TipAS antibiot 27.0 3E+02 0.0064 24.9 7.7 82 601-703 37-118 (118)
45 PRK11020 hypothetical protein; 26.2 3.7E+02 0.008 25.4 7.8 60 49-111 5-68 (118)
46 smart00745 MIT Microtubule Int 25.2 3.5E+02 0.0076 22.8 7.3 44 160-204 21-64 (77)
47 COG2882 FliJ Flagellar biosynt 25.2 4.8E+02 0.01 25.8 8.9 55 50-110 38-96 (148)
48 PF11047 SopD: Salmonella oute 25.1 99 0.0022 33.5 4.5 21 551-571 35-58 (319)
49 cd02678 MIT_VPS4 MIT: domain c 25.1 3.7E+02 0.008 22.9 7.4 52 160-213 19-70 (75)
50 PF04849 HAP1_N: HAP1 N-termin 24.9 9.7E+02 0.021 26.5 12.3 141 33-181 159-303 (306)
51 PF13176 TPR_7: Tetratricopept 24.2 86 0.0019 22.6 2.8 20 155-174 7-26 (36)
52 PF04212 MIT: MIT (microtubule 23.4 3.2E+02 0.007 22.6 6.6 23 160-182 18-40 (69)
53 PF01865 PhoU_div: Protein of 23.2 7.9E+02 0.017 24.9 11.8 58 45-102 7-64 (214)
54 PF14182 YgaB: YgaB-like prote 22.8 5.4E+02 0.012 22.8 9.6 66 37-107 4-69 (79)
55 cd02684 MIT_2 MIT: domain cont 22.2 4.3E+02 0.0093 22.8 7.2 52 160-213 19-70 (75)
56 PF13779 DUF4175: Domain of un 20.9 1.5E+03 0.033 28.5 14.2 41 143-183 536-576 (820)
No 1
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-65 Score=576.06 Aligned_cols=663 Identities=29% Similarity=0.360 Sum_probs=585.0
Q ss_pred hhhhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 23 DRLKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLA 102 (750)
Q Consensus 23 ~~~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs 102 (750)
.+...|..+.|+|+.|+++..+ ..+++++++|+++..+++++++.|+++||.||.+||++||||++||.||++|.|++.
T Consensus 4 ~~~s~f~~~~~t~~~~i~~~~~-~~e~dl~~~~~~~~~l~~as~e~~r~~~~~ny~~fI~~skEi~~le~el~~l~~~l~ 82 (673)
T KOG2215|consen 4 DDDSSFEDEKITPSSYIPSKSK-KKESDLQQLCSELVALNKASAETLRQKVSMNYKAFIRTSKEISDLEMELYQLPKFLI 82 (673)
T ss_pred CccccCcccccCccccccchhh-hhhhhHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHhcCcccccccchHHHhHHhhh
Confidence 4456789999999999999999 889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhhhh--hcCCcccccccccc-ccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHH--
Q 041810 103 TQSALVQGLAEGARIDSLFAV--TEDSDDDDISSLKN-EGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTV-- 177 (750)
Q Consensus 103 ~q~~lI~~L~~~~~l~~L~e~--veg~~~e~l~~~~~-~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l-- 177 (750)
+|.++++++.+++.. +..+. .++.+.- +....+ +.+....+|+.++++.+|.+.+.+ .+.|...++-.+...
T Consensus 83 ~Q~~~~~~l~~~~~~-d~~~~~s~~s~sn~-~~~~~~~~l~~~~~~~~~~fl~~l~~~~~~~-~dg~l~~~D~~~~~~~q 159 (673)
T KOG2215|consen 83 EQNNVIQSLLNGVLQ-DLSEDESLESLSNT-LLSLEDIHLGDVVKNLVKGFLKNLNTLLFES-VDGALEAFDFEKFLPSQ 159 (673)
T ss_pred hccchHHHhhccccc-cccccccccccCCc-cccccCCchhHHHHHHHHHHHHhhhhhhhcc-chHHHhhcchhhhccch
Confidence 999999999998852 22221 2221111 111111 112245789999999999999999 888888776544311
Q ss_pred HhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhh
Q 041810 178 REAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQS 257 (750)
Q Consensus 178 ~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~ 257 (750)
..+.. ..++ .....+..++.|...|++.+.+...++++...++..++-.|++||.++.++.+.++.+..++...+..
T Consensus 160 ~~~~~--~~~~-~L~~~~~~~~~r~~~l~d~~~~~a~~~~~~~~e~~~a~~~li~l~~~~~~~~i~~~~~~~~~~~~~ea 236 (673)
T KOG2215|consen 160 KTLKT--DFSH-DLNSVKITHDKRKESLTDLSLRLAAQINIKDEESWEAQLNLIRLGYSRMYHNILAQRPTLWVNMLIQA 236 (673)
T ss_pred HHHHH--HHHh-hhhhhhhhhchhhhHHHHHHHHHhhccccchHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHH
Confidence 11111 1111 14567778999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCCC--CcchhhhHHHHHHHHHHHHHHHHHHHhccccccCCcHHHH
Q 041810 258 LRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGEE--PAYSSELVTWAVKETEDFALLLERHILASAAAAGGLRVVT 335 (750)
Q Consensus 258 L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~--~~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~~~~ 335 (750)
.++....++..|-+.++.+.|..+..+..+-...|++. |++...-+.|..++++.|-.+|..+.+.++.++..++..+
T Consensus 237 ~R~~l~~~~~~~qa~~~~~~~~~~S~A~~e~~~~~~~e~~~s~~~~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~ 316 (673)
T KOG2215|consen 237 KRLSLQTSPMERQATFPKLRFSAISWALTESLISFGEENLPSYSDEEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAAS 316 (673)
T ss_pred HHHHHhhCccccccccchHHHhcCCcccCcccccccCCCCcccchhhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcc
Confidence 99888777788999999999999999999999999998 8899999999999999999999999998888888999999
Q ss_pred HHHHHHHHhhhhhhhcCCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCCCCCcccCCCC
Q 041810 336 ETIQICLGHCSLLEARGLALSPVILRSFRPSVEHALSAYLKRIEKSSAALAAADDWLLAYPPAGARPFSSTNSLNTAVGS 415 (750)
Q Consensus 336 ecv~~a~~~c~~L~~vGLDl~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~g~~~~~~~~~~ 415 (750)
.|.+.+..+|..|+.+||-+...|..++. ++++++.+.++.+.....+..-++|....++-..+... + ....
T Consensus 317 ~~~~~~~~~~~~Lq~~~lfl~~~ll~~~~--~~~~le~~~r~~~~~~~~l~el~~~~~at~~~l~~~s~---~---~~a~ 388 (673)
T KOG2215|consen 317 ACLQLALTICKPLQMRELFLLNLLLKIFS--VERALERDFRVAQRRHHQLVELGRWSRSTKRLLFKHSE---S---LSAY 388 (673)
T ss_pred cchhhhhhhhhhhhHhHhhhhhHHHHHhh--hhhhhhhhHHHHhhhHHHHHHhhhhcccchHHHHHHHH---H---HHHH
Confidence 99999999999999999999999999999 89999999999999999999999999763332211110 0 1134
Q ss_pred ccccchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHhCCCCCcchhhccccccchhccccchHHH
Q 041810 416 QPKLSTSAHKFNALVQELLEDIGPLENLKLDGPALDGVFQAFNSYVSLLINALPGSTENEENLEGFSNKIVSMAETESQQ 495 (750)
Q Consensus 416 ~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~qq 495 (750)
.+..|+++++|.-++++|.+|++++.+.+.+..++..+.+.++.|++.+.++++++.++++..+....+++++|++..+|
T Consensus 389 ~~~~~~~~~r~~~~~~d~~~~l~~~~~~e~~s~~~~~~~q~~~~~ldtl~~~l~~s~~e~~~~~s~~a~iv~~a~~~~~q 468 (673)
T KOG2215|consen 389 RCRDTDEASRFLQVVQDFSEDLCDILKFEQGSKCLYTSFQVLNKELDTLGRQLPRSYEEQGPARSMVAEIVKRAEHTSEQ 468 (673)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHcccchhhcCchHHHHHHHHHHhhhhHHH
Confidence 57999999999999999999999999999999999999999999999999999999888877778888999999999999
Q ss_pred HHHHHhHHHHHHhHHHHHHHhhccCcCCcccCCcCCcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccc
Q 041810 496 VALLANASLLADELLPRAALKLLPLSSNRMEMTPRRASDRQNRFPEQREWKRKLQRLVDRLRDSFCRTHALDIIFTEDGE 575 (750)
Q Consensus 496 ~~ll~Na~~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~~~l~~~~~kl~~~fc~~~~~~~i~~~~~~ 575 (750)
++.++++.++.++.||+...+-.+. ..+..|...+++++.++ |.++|++++-.+.++|++-||+++.+.++|.++|.
T Consensus 469 L~~ig~~lt~~~~~Llr~~le~s~~-l~~~~E~~~~ald~r~~--~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~ 545 (673)
T KOG2215|consen 469 LTLIGLDLTIRDEALLRSKLESSQL-LEGFKEGIADALDNRNR--EEESWVRYLLQTESALKDLSEELSDLGVIYLRQIS 545 (673)
T ss_pred HHHHHhhHHHHHHhhhhhhHHHhhh-hhcchhhHHHHHHhhhh--HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhh
Confidence 9999999999999999988755311 23346666778888887 89999999999999999999999999999999999
Q ss_pred cccchhhHhhccCCCCCCCCCCChHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHhcCChhhHHhhhcCC
Q 041810 576 IRLNAEIYTCMDESMEEPEWFPSPIFQELFIKLTRMASIASDMFVGRERFATILLMRLTETVILWLADDQSFWAEIEEGP 655 (750)
Q Consensus 576 ~~l~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v~~~ls~~~~~w~~~e~~~ 655 (750)
+++++++|.+ ++||++|.+.+.|+.+++|++.||++..++||++|+||+++|+ |+||-.+++++
T Consensus 546 ~~~e~d~~~n-------------l~~q~v~~~~~~~~~le~d~~l~k~~l~~~lLe~L~e~~~~~l---Q~l~~~~~~~~ 609 (673)
T KOG2215|consen 546 HELEGDGWLN-------------LSSQLVVSKKQLMHLLEKDLPLGKLELAFQLLELLAETLSIAL---QSLWLKIDDEA 609 (673)
T ss_pred cccccceEEe-------------hhHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHHHH---HHHHhhhcccc
Confidence 9999988855 7899999999999999999999999999999999999999999 89999999999
Q ss_pred ccCCccchhhhhhHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHHhcCCCCCCCCCCChHH
Q 041810 656 KPLGPLGLQQFYLDMEFVMLFSSQGRYLSRNLQQVIKNIIARAIEVVAATGIDPYSVLPEDDWF 719 (750)
Q Consensus 656 ~~~~~~glqq~~Ldm~f~~~~a~~g~~~s~~~~~~~~~~~~~a~~~~~~~g~dp~~~l~~d~wf 719 (750)
.|.+|.|++|||+||.|.++++.++||+.+..+.+-+-.+.++.+.|+++|++|++.+|.++||
T Consensus 610 dP~~~~~~~q~i~~m~~~v~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~v~~~s~l~~~d~f 673 (673)
T KOG2215|consen 610 DPNIFAGIRQLILDMELPVCIAAFDRIEGELGSKIMQLNTLRAEAKFDAMGVNPQSDLPVDDVF 673 (673)
T ss_pred CcchHHHHHHHHHHhhhhhhHHHhhhhhHHhhhhhHHHHHHHHHhhcccccCCccccccccccC
Confidence 9999999999999999999999999999999999999999999999999999999999999998
No 2
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.97 E-value=3.8e-30 Score=278.24 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=264.5
Q ss_pred hhhhhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---
Q 041810 22 SDRLKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMR--- 98 (750)
Q Consensus 22 ~~~~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~--- 98 (750)
.-+...+++++||||.|+.++.++|+..+|.+.+.+|+...+++++|||+.||+|||+||.++++|++|++++.+|.
T Consensus 22 plsptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eM 101 (636)
T KOG2346|consen 22 PLSPTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEM 101 (636)
T ss_pred CCCccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchh
Confidence 34567889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHH
Q 041810 99 NLLATQSALVQGLAEGARIDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVR 178 (750)
Q Consensus 99 ~lLs~q~~lI~~L~~~~~l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~ 178 (750)
.-|++.++.|+++++++. .+|.++++.+.+ +- ...+.+ +.++++.++|..|..|+..+.|.+|+...-.|+..+.
T Consensus 102 d~L~~~ms~i~~~s~~l~-g~L~ekre~I~k--Lg-~~~~ll-rkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~ 176 (636)
T KOG2346|consen 102 DGLEEVMSSIQSKSDGLA-GSLFEKRELIKK--LG-QRPPLL-RKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLR 176 (636)
T ss_pred hhHHHHHHHHhhhhcccc-chhHHhHHHHHH--hc-CCccch-hhhHHHhhhHHHHHHhccccccchhhccccccccchh
Confidence 778888999999999986 678888776544 22 223333 6799999999999999999999999999999999999
Q ss_pred hhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCCcHH-HHHHHHHhHHHHHHHhhh
Q 041810 179 EAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDGPRS-HTLLLKSHHQRLQSYVQS 257 (750)
Q Consensus 179 ~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A-~~lFL~~rs~~L~~~lr~ 257 (750)
+|++.| .++....++++++.+++.+|...+++++...+...+|+.+|..||++... +..+|.+-...|
T Consensus 177 qY~~~p-----sfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~del~~~lL~~~eqsL------ 245 (636)
T KOG2346|consen 177 QYDGRP-----SFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPVDELKAKLLEKLEQSL------ 245 (636)
T ss_pred hcCCCC-----cHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCChHHHHHHHHHHHhccc------
Confidence 999877 78999999999999999999999999887788999999999999999876 777777665553
Q ss_pred ccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHH
Q 041810 258 LRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGEEPAYSSELVTWAVKETEDFALLLERHILASAAAAGGLRVVTET 337 (750)
Q Consensus 258 L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~~~~ec 337 (750)
+++.+..+-+++|+-.+..++.-+ ..++.+.....+ ++++++.+..+
T Consensus 246 -------DvL~~~d~~~s~fv~~l~s~a~t~-------------------------~alv~~~~~~e~-~~~d~S~~vRA 292 (636)
T KOG2346|consen 246 -------DVLQIKDEEASTFVEDLDSSADTE-------------------------SALVHPAKIHED-AVRDFSEAVRA 292 (636)
T ss_pred -------hhheeecccccccccchhhhhhhh-------------------------hhhhhhhhhhhc-cccchHHHHHH
Confidence 446777777788888887777665 334444443333 45788888888
Q ss_pred HHHHHHhh-hhhhhcCCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041810 338 IQICLGHC-SLLEARGLALSPVILRSFRPSVEHALSAYLKRIEKSSAALAA 387 (750)
Q Consensus 338 v~~a~~~c-~~L~~vGLDl~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~ 387 (750)
.+..+.-. ..+--.|++|.+++.+++.....+-+..++.||.+.++....
T Consensus 293 ldr~fr~s~~r~~~~a~~l~~~~~el~~~v~~~e~~l~l~ri~~~f~~~L~ 343 (636)
T KOG2346|consen 293 LDRIFRDSEERLFKLARALTAMLPELLLSVLLRECFLILNRIYQDFRQLLD 343 (636)
T ss_pred HHHHcccccchHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87776632 334447888999999999888888888888888888766443
No 3
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.84 E-value=2.3e-18 Score=188.45 Aligned_cols=317 Identities=15% Similarity=0.157 Sum_probs=257.3
Q ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhh
Q 041810 43 SQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEGARIDSLFA 122 (750)
Q Consensus 43 l~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~~L~e 122 (750)
+.+.+.+++...-..|...++.+...++...++||..||.+++....+..++..+++.+......+..|.+.+. .+..
T Consensus 4 l~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~--~f~~ 81 (338)
T PF04124_consen 4 LTSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQ--RFSS 81 (338)
T ss_pred cccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH
Confidence 34677788888889999999999999999999999999999999999999999999999999888888887662 3332
Q ss_pred hhcCCccccccccccccC--ccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHH
Q 041810 123 VTEDSDDDDISSLKNEGL--SNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISE 200 (750)
Q Consensus 123 ~veg~~~e~l~~~~~~~~--~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~e 200 (750)
+......+.- ...... .+.+.-+.|+|.-+|.||..++|++|+++...+++....+++.+ .++.|..+++.
T Consensus 82 ~~~~~~~~r~--~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~-----lv~~i~~ev~~ 154 (338)
T PF04124_consen 82 KAQKISEERK--KASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIP-----LVKSIAQEVEA 154 (338)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCch-----hHHHHHHHHHH
Confidence 2221111100 000000 02356789999999999999999999999999999988888765 68899999999
Q ss_pred HHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCCcHH--HHHHHHHhHHHHHHHhhhccccccccccchhHHhHHHHH
Q 041810 201 QRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDGPRS--HTLLLKSHHQRLQSYVQSLRSSSSLSGGALTATVSQLVF 278 (750)
Q Consensus 201 r~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A--~~lFL~~rs~~L~~~lr~L~~eg~~~~~~YI~~LS~~fF 278 (750)
-...+...|...++.| +.-+.+.+.|++|.|++..+++ +..||.+|...++..+..+...+. ..|+.++..+|-
T Consensus 155 ~~~~ml~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~~---~~~lkr~iei~R 230 (338)
T PF04124_consen 155 ALQQMLSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSDP---YRYLKRYIEIYR 230 (338)
T ss_pred HHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhhH---HHHHHHHHHHHH
Confidence 9999999999999887 8888999999999999987655 899999999999998888876553 699999999999
Q ss_pred HHHHHHHHHHHhhcCCC-Cc----------chhhhHHHHHHHHHHHHHHHHHHHhccccccCCcH-HHHHHHHHHHHhhh
Q 041810 279 STIAQAARDSLAVFGEE-PA----------YSSELVTWAVKETEDFALLLERHILASAAAAGGLR-VVTETIQICLGHCS 346 (750)
Q Consensus 279 s~I~~t~~~f~~~F~d~-~~----------~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~-~~~ecv~~a~~~c~ 346 (750)
..+.+++..|+++|+++ +. ..+.+..|+.+.+..|...+++++-... +..+. ++.+|+ --|.
T Consensus 231 ~~~fdiitqY~aIF~~e~~~~~~~~~~~~~~~~~l~sw~~~~v~~~l~~L~~~L~~~~--~~~~~sll~q~~----y~~~ 304 (338)
T PF04124_consen 231 EHLFDIITQYRAIFPDESSTSVSLQDRPKFIPSELFSWALHRVSSFLETLEMYLPRVD--ESSRESLLTQLM----YFAS 304 (338)
T ss_pred HHHHHHHHHHHHHcCCccccccccccccccChhHHHHHHHHHHHHHHHHHHHHhhccc--cchHHHHHHHHH----HHHH
Confidence 99999999999999933 11 1367888999999999999999984442 12222 223444 3347
Q ss_pred hhhhcCCcchHHHHhhhhHHHHHHHHHHHHHH
Q 041810 347 LLEARGLALSPVILRSFRPSVEHALSAYLKRI 378 (750)
Q Consensus 347 ~L~~vGLDl~~~L~~lL~p~ve~al~~~~~~i 378 (750)
.|..+|.||++++.+.|...+.+.+..++...
T Consensus 305 S~~r~g~DF~~ll~~~~~~~~~~~f~~~~~~a 336 (338)
T PF04124_consen 305 SFGRVGADFRPLLAPLFERAVLNLFETSVSTA 336 (338)
T ss_pred hcCccCCChHHHhHHHHHHHHHHHHHHHHHhc
Confidence 78889999999999999999999988877654
No 4
>KOG2215 consensus Exocyst complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=3.4e-16 Score=179.93 Aligned_cols=335 Identities=16% Similarity=0.130 Sum_probs=263.6
Q ss_pred cchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC-
Q 041810 142 NMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPS-TR- 219 (750)
Q Consensus 142 ~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s-~~- 219 (750)
+...|..+.++.++.++++++|..+..+.-...+... .+ ....+-..+..+.--|...|...++.+. ..
T Consensus 282 ~~~~W~~~~~e~~~~~v~~~~~~~s~~~~~l~~~~~~----~~-----~~~~~~~~Lq~~~lfl~~~ll~~~~~~~~le~ 352 (673)
T KOG2215|consen 282 EEVLWLEELVELFKLLVAHNAFKTSLEAIHLRAASAC----LQ-----LALTICKPLQMRELFLLNLLLKIFSVERALER 352 (673)
T ss_pred hhhchhhhhhHHHHHHHHhccchhhHHHHHhhhcccc----hh-----hhhhhhhhhhHhHhhhhhHHHHHhhhhhhhhh
Confidence 4578999999999999999999999888644433221 11 1235666677777778888877776321 11
Q ss_pred -hHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCCCCcc
Q 041810 220 -GVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGEEPAY 298 (750)
Q Consensus 220 -~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~~ 298 (750)
....++....|+.||+..+|...||..|+..+ ...+........ ....+++.+...+..+.. |...|.|
T Consensus 353 ~~r~~~~~~~~l~el~~~~~at~~~l~~~s~~~-~a~~~~~~~~~~--------r~~~~~~d~~~~l~~~~~-~e~~s~~ 422 (673)
T KOG2215|consen 353 DFRVAQRRHHQLVELGRWSRSTKRLLFKHSESL-SAYRCRDTDEAS--------RFLQVVQDFSEDLCDILK-FEQGSKC 422 (673)
T ss_pred hHHHHhhhHHHHHHhhhhcccchHHHHHHHHHH-HHHHhhhhhhhH--------HHHHHHHHHHHHHHHHhh-hccchHH
Confidence 12556667888999999999999999999988 554443332221 145566666666677777 8887888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhhhhhhcCCcchHHHHhhhhHHHHHH--HHHHHH
Q 041810 299 SSELVTWAVKETEDFALLLERHILASAAAAGGLRVVTETIQICLGHCSLLEARGLALSPVILRSFRPSVEHA--LSAYLK 376 (750)
Q Consensus 299 ~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~~~~ecv~~a~~~c~~L~~vGLDl~~~L~~lL~p~ve~a--l~~~~~ 376 (750)
.....+|+..+++.|...+.+++.... .+.+++++|++.+..+|.+|...|+|+.+.++.++|..++.. +..+.+
T Consensus 423 ~~~~~q~~~~~ldtl~~~l~~s~~e~~---~~~s~~a~iv~~a~~~~~qL~~ig~~lt~~~~~Llr~~le~s~~l~~~~E 499 (673)
T KOG2215|consen 423 LYTSFQVLNKELDTLGRQLPRSYEEQG---PARSMVAEIVKRAEHTSEQLTLIGLDLTIRDEALLRSKLESSQLLEGFKE 499 (673)
T ss_pred HHHHHHHHHHHHHHHHHHcccchhhcC---chHHHHHHHHHHhhhhHHHHHHHHhhHHHHHHhhhhhhHHHhhhhhcchh
Confidence 889999999999999988888885443 567899999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHh-ccCcccc--CCCCCCCCCC------C------CCCcccCCCCccccchhHHHHHHHHHHHHhhhcccc
Q 041810 377 RIEKSSAALAA-ADDWLLA--YPPAGARPFS------S------TNSLNTAVGSQPKLSTSAHKFNALVQELLEDIGPLE 441 (750)
Q Consensus 377 ~i~e~i~~~~~-~d~W~~~--~~~~~~~~~~------g------~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~ 441 (750)
-|++++.++.+ ++.|+++ .++.++..+. | ++.+..++ +|++|++..+.|.+.+..+++-..++.
T Consensus 500 ~~~~ald~r~~~ee~W~~~~L~t~s~Lk~l~ee~~~~gv~~~~~~~~~~e~d-~~~nl~~q~v~~~~~~~~~le~d~~l~ 578 (673)
T KOG2215|consen 500 GIADALDNRNREEESWVRYLLQTESALKDLSEELSDLGVIYLRQISHELEGD-GWLNLSSQLVVSKKQLMHLLEKDLPLG 578 (673)
T ss_pred hHHHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHhhhhcccccc-eEEehhHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999 9999987 7888877755 3 33455455 999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHHHHHHHhCCCCCcchhhccccccchhccccchHHHHHHHHhHHHHHHhHHHHHHHhhccC
Q 041810 442 NLKLDGPALDGVFQAFNSYVSLLINALPGSTENEENLEGFSNKIVSMAETESQQVALLANASLLADELLPRAALKLLPL 520 (750)
Q Consensus 442 ~~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~qq~~ll~Na~~l~d~llp~~~~~~~~~ 520 (750)
.+.+..++++++.+..-.|++++.....+..++. .+ .++-.+|.+..+|.+..++.+.
T Consensus 579 k~~l~~~lLe~L~e~~~~~lQ~l~~~~~~~~dP~---------~~------------~~~~q~i~~m~~~v~~~~~~~~ 636 (673)
T KOG2215|consen 579 KLELAFQLLELLAETLSIALQSLWLKIDDEADPN---------IF------------AGIRQLILDMELPVCIAAFDRI 636 (673)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhccccCcc---------hH------------HHHHHHHHHhhhhhhHHHhhhh
Confidence 9999999999999988888898887766553332 12 5666677888888888877543
No 5
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=99.69 E-value=2.6e-16 Score=138.91 Aligned_cols=86 Identities=40% Similarity=0.567 Sum_probs=83.6
Q ss_pred ccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 28 FKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSAL 107 (750)
Q Consensus 28 f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~l 107 (750)
|++++|||+.|+++++++.+.++|++++.+|...++..+++||++||+||++||.||+||+.|+++|.+|+++|+++...
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~ 80 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQS 80 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhh
Q 041810 108 VQGLAE 113 (750)
Q Consensus 108 I~~L~~ 113 (750)
++.+++
T Consensus 81 ~~~l~~ 86 (87)
T PF08700_consen 81 IQSLQE 86 (87)
T ss_pred HHHhhc
Confidence 998764
No 6
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=9.1e-14 Score=155.61 Aligned_cols=344 Identities=15% Similarity=0.175 Sum_probs=270.3
Q ss_pred cCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 29 KSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALV 108 (750)
Q Consensus 29 ~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI 108 (750)
.+++|+ .||.++. .++.+++++.+..|...+...+..++..-..||..||++++-+...=.++...++.+-+.--..
T Consensus 17 ~~~~~~--~~v~~l~-~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~ 93 (581)
T KOG2069|consen 17 NSPEMD--AYVRELT-TKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQL 93 (581)
T ss_pred cCchhH--HHHHHHc-CCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhh
Confidence 556665 7898874 5678999999999999999999999999999999999999888888888888887776666666
Q ss_pred HHHhhhhhhhhhhhhhcCCcc-ccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCC
Q 041810 109 QGLAEGARIDSLFAVTEDSDD-DDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLS 187 (750)
Q Consensus 109 ~~L~~~~~l~~L~e~veg~~~-e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~ 187 (750)
..|..++. .+....+.... +.+...- ..-...+.-+.++|+.+|.|+..++|++|.++-.-+-+.-...+..|
T Consensus 94 ~~L~s~~~--~f~~~~~~i~e~~~~~~~~-l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~p--- 167 (581)
T KOG2069|consen 94 PELTSPCK--RFQDFAEEISEHRRLNSLT-LDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTIP--- 167 (581)
T ss_pred HHhhhHHH--HHHHHHHHhhHhHHHHHHH-HhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccch---
Confidence 66666552 12111111000 0000000 00012345689999999999999999999999877766555444433
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCCcHH--HHHHHHHhHHHHHHHhhhcccccccc
Q 041810 188 RSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDGPRS--HTLLLKSHHQRLQSYVQSLRSSSSLS 265 (750)
Q Consensus 188 ~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A--~~lFL~~rs~~L~~~lr~L~~eg~~~ 265 (750)
.++.|...+.+-+..+.++|.+.++.| +...++.+.|.+|.+.+....+ +-.||.+|..++.+.+..|.....
T Consensus 168 --vi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I~~~~~-- 242 (581)
T KOG2069|consen 168 --VIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDISTNNP-- 242 (581)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcccccH--
Confidence 688999999999999999999999865 5678999999999999887765 889999999999998888876554
Q ss_pred ccchhHHhHHHHHHHHHHHHHHHHhhcCCCCc------------chhhhHHHHHHHHHHHHHHHHHHHhccccccCCcH-
Q 041810 266 GGALTATVSQLVFSTIAQAARDSLAVFGEEPA------------YSSELVTWAVKETEDFALLLERHILASAAAAGGLR- 332 (750)
Q Consensus 266 ~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~------------~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~- 332 (750)
-.|+++...++-.++..+...|+++|++..+ -.+.|..|+...+..|+.++.+-+.-.. ..++
T Consensus 243 -~~~l~~~i~~~r~~lf~~i~qY~aifpe~~~~~n~~~~~~~~~~~~~~~~w~~~~~ss~l~~i~~~~~~~~---~~l~~ 318 (581)
T KOG2069|consen 243 -YLYLKKTIEIIRVNLFDIITQYLAVFPEDEGDLNPNGDVRYKNITDLLISWVLSKISSFLQLIEMMLKKGI---ESLEH 318 (581)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcccCCCccCchhhhhhhHHHhhccHHHHHHHHHHhhh---chHHH
Confidence 5999999999999999999999999998521 1478999999999999999998775443 3444
Q ss_pred HHHHHHHHHHHhhhhhhhcCCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCcccc
Q 041810 333 VVTETIQICLGHCSLLEARGLALSPVILRSFRPSVEHALSAYLKRIEKSSAALAAADDWLLA 394 (750)
Q Consensus 333 ~~~ecv~~a~~~c~~L~~vGLDl~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~ 394 (750)
++-.|+-.+++ +..+|+||+..+.++|...+.+-+..|.....+.+.....+..|...
T Consensus 319 vl~~cmyf~~S----F~rvg~Dfr~~lap~f~~~vl~~F~knvqe~vEkfq~el~~y~~i~~ 376 (581)
T KOG2069|consen 319 VLGQLMYFALS----FGRVGLDFRGLLAPLLECVVLQRFMKNVEEATEKFELELESYYLIQS 376 (581)
T ss_pred HHHHHHHHHHh----hccccchhcccccHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccc
Confidence 34477766555 55699999999999999999999999999999999998888888753
No 7
>PF15469 Sec5: Exocyst complex component Sec5
Probab=99.28 E-value=1.1e-10 Score=117.11 Aligned_cols=172 Identities=14% Similarity=0.185 Sum_probs=132.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhhh--hhhhhhhhcCCccccccccccc
Q 041810 67 EEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNL------LATQSALVQGLAEGAR--IDSLFAVTEDSDDDDISSLKNE 138 (750)
Q Consensus 67 sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~l------Ls~q~~lI~~L~~~~~--l~~L~e~veg~~~e~l~~~~~~ 138 (750)
++||..|++||.+||++.++|..+..+|...+.- +......+........ +..+.++.+...+ +. ....
T Consensus 2 ~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~--l~-~~l~ 78 (182)
T PF15469_consen 2 EDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADK--LR-NALE 78 (182)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH--HH-HHHH
Confidence 6899999999999999999999999999877743 4444444544443321 1222222211100 11 0000
Q ss_pred cCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhh-hcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 041810 139 GLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAK-HRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPS 217 (750)
Q Consensus 139 ~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~-~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s 217 (750)
.. +..++++++|..|.-+|..++|+.||..|.+++.++.++. +.+ .++.+..+|+.+...+...|.+.+.++.
T Consensus 79 ~l-~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~-----vf~~v~~eve~ii~~~r~~l~~~L~~~~ 152 (182)
T PF15469_consen 79 FL-QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVP-----VFQKVWSEVEKIIEEFREKLWEKLLSPP 152 (182)
T ss_pred HH-HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 11 4578999999999999999999999999999999999875 333 7899999999999999999999999988
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHh
Q 041810 218 TRGVELRSAVLALKKLGDGPRSHTLLLKSH 247 (750)
Q Consensus 218 ~~~~elr~aV~lL~rLG~~~~A~~lFL~~r 247 (750)
.+..+..+.|..|..||..+.-.-.||.++
T Consensus 153 ~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 153 SSQEEFLKLIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHcC
Confidence 888899999999999999887777777643
No 8
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=99.00 E-value=8.3e-05 Score=85.56 Aligned_cols=272 Identities=13% Similarity=0.120 Sum_probs=168.0
Q ss_pred HHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 041810 39 VASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEGARID 118 (750)
Q Consensus 39 v~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~ 118 (750)
|..++...+-.||+..++++++..+.-.++||+.|=+-|..-|+++++|.+|.+--..|...++.-..-..+|..++.-.
T Consensus 10 vd~LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~L~~~I~~t~~ncrsL~a~svA~ 89 (863)
T KOG2033|consen 10 VDTLFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADKLASDIANTRVNCRSLHANSVAK 89 (863)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccC
Confidence 45667778889999999999999999999999999999999999999999998776666665555555555554322100
Q ss_pred hhhhhhcC-CccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHH---HHH
Q 041810 119 SLFAVTED-SDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAI---FSL 194 (750)
Q Consensus 119 ~L~e~veg-~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~---~~i 194 (750)
. -..-+. ...|..| + ..-..+.|.+.|+.+=-++...+|=+|+.+|..++.+-+++-...+.+ +.. ..+
T Consensus 90 t-p~raeqnp~~e~~Y-g----~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss-~ll~nfP~l 162 (863)
T KOG2033|consen 90 T-PGRAEQNPAGEHLY-G----TAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSS-MLLKNFPAL 162 (863)
T ss_pred C-cchhhcCchhhHHH-H----HHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCc-HHHhhcHHH
Confidence 0 000000 0111233 1 112467899999999999999999999999999987766332221111 111 111
Q ss_pred HHHHHHHH---HHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCC--cHHHHHHHHHhHHHHHHHhhhccccccccccch
Q 041810 195 QSAISEQR---QKLADQLAGTICQPSTRGVELRSAVLALKKLGDG--PRSHTLLLKSHHQRLQSYVQSLRSSSSLSGGAL 269 (750)
Q Consensus 195 ~~ki~er~---~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~--~~A~~lFL~~rs~~L~~~lr~L~~eg~~~~~~Y 269 (750)
..+...-+ ..+..+-...+.+++.+-.....++..+.-|.+. +++.++||..|...|.+.+.. .++ ++..-
T Consensus 163 ~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLdesdpsqvLelFL~~Rk~~il~lLn~-~p~---~~~~v 238 (863)
T KOG2033|consen 163 TNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLDESDPSQVLELFLEKRKEHILHLLND-GPS---EPRRV 238 (863)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhc-CCC---ccchh
Confidence 11111111 2333333333444555545556566555555554 578999999999999999887 332 23344
Q ss_pred hHHhHHHHHHHHHHHHHHHHhhcCCC-------------------CcchhhhHHHHHHHHHHHHHHHHHHHh
Q 041810 270 TATVSQLVFSTIAQAARDSLAVFGEE-------------------PAYSSELVTWAVKETEDFALLLERHIL 322 (750)
Q Consensus 270 I~~LS~~fFs~I~~t~~~f~~~F~d~-------------------~~~~S~LV~Wa~~eie~f~~l~~rqv~ 322 (750)
...+|.+ ...|+.|+..-.++|-.. +.+-+.+-.|...-.+.-+..+-|+..
T Consensus 239 ka~il~~-v~vl~~Tl~qv~elfl~~~Llfstle~c~gq~~~~~i~emE~~l~~sf~~lpesim~f~pr~lv 309 (863)
T KOG2033|consen 239 KATILNI-VDVLKKTLAQVEELFLHGELLFSTLEVCNGQYKCELIREMEADLAYSFEKLPESIMDFVPRHLV 309 (863)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHhccHHHHHHHHhcCCccCCCCchHHHHHHHHHHHhhHHHHhhccchhcc
Confidence 4455443 244455555555555321 122355667777766666666666553
No 9
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=6.4e-06 Score=96.71 Aligned_cols=615 Identities=14% Similarity=0.174 Sum_probs=330.1
Q ss_pred ccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----HHHH
Q 041810 28 FKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMR-----NLLA 102 (750)
Q Consensus 28 f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~-----~lLs 102 (750)
|.++||+|.=|+...=+..+-++++.--..|..-...=.+-=+..|-.|...||..=+++..++.-+.+.. ....
T Consensus 166 l~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~ 245 (934)
T KOG2347|consen 166 LRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHGSGTT 245 (934)
T ss_pred cccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccchHHH
Confidence 79999999999998766666666555444444333333344456677899999999999999998888833 1222
Q ss_pred HHHHHHHHHhhhhh--hhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhh
Q 041810 103 TQSALVQGLAEGAR--IDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREA 180 (750)
Q Consensus 103 ~q~~lI~~L~~~~~--l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~ 180 (750)
..-+.|.+++.... .+++.++.+..-+ .- ..-... ...++|+.+|...+.-+.-++|+-+|.-|++++....+.
T Consensus 246 ~l~n~i~~~~s~ad~iF~~vl~Rk~~ADs--tR-svL~~l-qRfkfLFnLp~~ier~i~kGeYd~vvndYekAKsl~~~t 321 (934)
T KOG2347|consen 246 KLENCIKNSTSRADLIFEDVLERKDKADS--TR-SVLGVL-QRFKFLFNLPSNIERSIKKGEYDTVVNDYEKAKSLFGKT 321 (934)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhccccccc--HH-HHHHHH-HHHHHHHhcchhhhhHhhcCCceeeccchhhHHHhhccc
Confidence 22233333333221 1222221111000 00 000001 246799999999999999999999999999999887653
Q ss_pred hhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCCc-----------HHHHHHHHHhHH
Q 041810 181 KHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDGP-----------RSHTLLLKSHHQ 249 (750)
Q Consensus 181 ~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~-----------~A~~lFL~~rs~ 249 (750)
. .+ .++.+-..++.|+..+...|.+.+..+...-.+..+.|.+|.-|.-.. +-..-++..+.-
T Consensus 322 ~-v~-----~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~wq~I~~q~k~i~~L~~s~~~ 395 (934)
T KOG2347|consen 322 E-VN-----LFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPVWQCIGVQNKRILGLLESCWD 395 (934)
T ss_pred c-cH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCchhhhccccchHHHhhhhhcch
Confidence 2 22 588899999999999999999999887777788999999998654321 111122222222
Q ss_pred HHHHHhhhcc---------cc--------------------------ccccccchhHHhHHHHHHHHHHHHHHHHhhcCC
Q 041810 250 RLQSYVQSLR---------SS--------------------------SSLSGGALTATVSQLVFSTIAQAARDSLAVFGE 294 (750)
Q Consensus 250 ~L~~~lr~L~---------~e--------------------------g~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d 294 (750)
.....+..++ .. .+..-.+||.+|+.+..+.+-.-=+--...|.+
T Consensus 396 ~~~~~l~~~~~~~~~~q~s~~g~~~S~t~s~~~~~~~q~~~~~~~~~k~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G 475 (934)
T KOG2347|consen 396 DHVARLEGLRLSDKWTQPSQNGVHLSDTASSMENSQNQVINEWKIREKTPERVNFIEKLTDLLLSQLPIFWKLAISYFNG 475 (934)
T ss_pred hHHHHhhcccccccccchhhcccccCchHHHHhhhhhhhccchhhhhhchHHHHHHHHHHHHHHHhCcHHHHHHHHHhcc
Confidence 2222222222 00 122335899999999888775443333334443
Q ss_pred -----CCcc-hhhh-----HHHHHHHHHHHHHHHHHHHhc---c---c----------ccc-CCcHHHHHHHHHHHHhhh
Q 041810 295 -----EPAY-SSEL-----VTWAVKETEDFALLLERHILA---S---A----------AAA-GGLRVVTETIQICLGHCS 346 (750)
Q Consensus 295 -----~~~~-~S~L-----V~Wa~~eie~f~~l~~rqv~~---~---~----------~aa-~~l~~~~ecv~~a~~~c~ 346 (750)
..-+ -|.+ ...++.--+.|..++..-... . + ... ..+.-++.|++.++.-|.
T Consensus 476 ~~~~~~sq~~~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~ 555 (934)
T KOG2347|consen 476 DLFSPSSQVQDSDINKMEQNNEVREKREVFHSLVELALMDRFTLSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKACQ 555 (934)
T ss_pred cccCcccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccccCCcCCcccccccCccchhHHHHhHHHHH
Confidence 2111 1111 111222222333333322110 0 0 001 112234799999999998
Q ss_pred hhhhcCCcchHHHHhhhhHHHHHH-------HHHHHHHHHHHHHHHHhccCccccCCCCCCCC--CCCCCCcccCCCCcc
Q 041810 347 LLEARGLALSPVILRSFRPSVEHA-------LSAYLKRIEKSSAALAAADDWLLAYPPAGARP--FSSTNSLNTAVGSQP 417 (750)
Q Consensus 347 ~L~~vGLDl~~~L~~lL~p~ve~a-------l~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~--~~g~~~~~~~~~~~~ 417 (750)
.|..-- ++....++|-.+-. +..-+++-.|.++.++..+.|.+......-+. ... -.|-
T Consensus 556 sL~ale----~~P~~~lq~Iq~li~~~rl~~~~~~~~~~~e~is~l~~re~W~~~s~~~rn~s~t~LP-~~fE------- 623 (934)
T KOG2347|consen 556 SLEALE----SLPHDALQPIQKLITEARLQCLSSWMRASTERISTLAKRETWIPDSILERNRSITYLP-LAFE------- 623 (934)
T ss_pred HHHHhh----hChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhhhcccchhhhh-HHHH-------
Confidence 887633 22224445444443 34555666788888899999998722211000 000 0000
Q ss_pred ccchhHHHHHHHHH-HHHhhhccccccccchhHHHHHHHHHHHHHHHHHHhCC---C-CCcchhhc---cc---cccch-
Q 041810 418 KLSTSAHKFNALVQ-ELLEDIGPLENLKLDGPALDGVFQAFNSYVSLLINALP---G-STENEENL---EG---FSNKI- 485 (750)
Q Consensus 418 ~LT~S~~~F~~~v~-~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~---~-~~~~~~~~---~~---~~~~~- 485 (750)
..+-|+..=.+.+. .+=-.++..--+++...+.+.+..+-...+.+++.--. . +.+-..+. ++ .+..+
T Consensus 624 t~ivssl~q~~~~~l~~~gEa~~f~~~~~~~~i~el~I~~~~~fl~c~e~L~~h~~~~~~~~~q~~t~~~~~~~~~~~~q 703 (934)
T KOG2347|consen 624 TVIVSSLEQVNSVLLSFEGEAALFEQPDMQAEIEELSISVRLAFLNCFEDLAIHLEQIGADLSQLTTQIEGQNGFSNAHQ 703 (934)
T ss_pred HHHhhhHHhhhhHHhhccccccccCchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCchhhcccccccccccccccc
Confidence 00011111111111 11111111111122222222222222222222211100 0 00000000 00 00000
Q ss_pred -hccccc-------hHHHHHHHHhHHHHHHhHHHHHHHhhccCcCCcccCCcCCcCCCCCCChhhHHHHHHHHHHHHHHH
Q 041810 486 -VSMAET-------ESQQVALLANASLLADELLPRAALKLLPLSSNRMEMTPRRASDRQNRFPEQREWKRKLQRLVDRLR 557 (750)
Q Consensus 486 -v~~a~t-------~~qq~~ll~Na~~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~~~l~~~~~kl~ 557 (750)
--.+.| +.+-+.++.|.-|.-+.+.|..-..++-. ... +..+ .| .....+..+..+|.
T Consensus 704 ed~~~ns~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~~------~~~--~~k~----iE--~is~s~s~l~s~l~ 769 (934)
T KOG2347|consen 704 EDISINSADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKYT------WLL--SRKN----IE--DISMSLSGLGSKLF 769 (934)
T ss_pred hhhhcccccccCChhheeEEEeccHHHHHHHHHHHHHHHHHHH------hhc--cccc----HH--HHHHHHHHHHHHHH
Confidence 001222 33347789998888888888887766311 110 0111 12 23345666667777
Q ss_pred HHHHHHHHHHhhcCcccccccchhhHhhccCCCCCCCC--CCChHHHH---HHHHHHHHHHhhhhhhcchhHHHHHHHHH
Q 041810 558 DSFCRTHALDIIFTEDGEIRLNAEIYTCMDESMEEPEW--FPSPIFQE---LFIKLTRMASIASDMFVGRERFATILLMR 632 (750)
Q Consensus 558 ~~fc~~~~~~~i~~~~~~~~l~~~~y~~~~~~~~~~~~--~ps~~fq~---lf~~l~~l~~~~~~~~~g~e~~~~~ll~r 632 (750)
.+|-...+--+.-+ +.+.|| + ....| .|+ +|+. +=.-|--|--+..++|.+ .+.|+.+
T Consensus 770 e~Yi~~k~~~i~~a------lEp~~~---~---~~~~W~~~~~-~~~irdYa~E~l~~lV~VhaEvf~i----ap~Ll~k 832 (934)
T KOG2347|consen 770 ENYIEDKADPIRGA------LEPYLL---D---GGIQWGMAPP-VKGIRDYAKEALHNLVAVHAEVFAI----APQLLDK 832 (934)
T ss_pred HHHHHHhhhhhhhc------ccchhh---c---cccccccCCC-ccchHHHHHHHHHHHHHHHHHHHhc----CHHHHHH
Confidence 77766555544322 444444 2 12344 333 4442 222222233334556665 5788889
Q ss_pred HHHHHHHHhcCChhhHHhhhcCCccCCccchhhhhhHHHHHHHHHhcCCCcChhHHHHHHHHHHHHHHHHH
Q 041810 633 LTETVILWLADDQSFWAEIEEGPKPLGPLGLQQFYLDMEFVMLFSSQGRYLSRNLQQVIKNIIARAIEVVA 703 (750)
Q Consensus 633 l~e~v~~~ls~~~~~w~~~e~~~~~~~~~glqq~~Ldm~f~~~~a~~g~~~s~~~~~~~~~~~~~a~~~~~ 703 (750)
+.+.+|.-+|+ +|-..+......+.+.|.=|.++|..|+-.+- |+|.......-++ -|+++-.
T Consensus 833 iL~~~ve~i~d--~L~~l~~~~v~s~S~nG~lQi~vdl~~l~~~l--~~Ylt~~a~~slk----qale~l~ 895 (934)
T KOG2347|consen 833 ILGETVEGISD--ELLRLFSCDVQSFSANGALQIMVDLEYLEDVL--GPYLTKDAKESLK----QALEALS 895 (934)
T ss_pred HHHHHHHHHHH--HHHHHhhhhhhccCCCcceeeeeeHHHHHHHH--HHhccHHHHHHHH----HHHHHhh
Confidence 88888888885 77888887899999999999999999999998 9999877665544 3555543
No 10
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.89 E-value=9.3e-05 Score=87.54 Aligned_cols=446 Identities=17% Similarity=0.117 Sum_probs=270.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhhhhhhhhhh-
Q 041810 46 MNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQG-LAEGARIDSLFAV- 123 (750)
Q Consensus 46 ~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~-L~~~~~l~~L~e~- 123 (750)
.+.+++.....+|.+...++..+.+..+-+||..|+.-.....++-.+..++.+-+. .+++. ..+.+. ..+.+.
T Consensus 7 l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~---d~l~~~~~~~i~-~~l~~a~ 82 (593)
T PF06248_consen 7 LSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREIN---DLLQSEIENEIQ-PQLRDAA 82 (593)
T ss_pred CCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHhhccchhH-HHHHHHH
Confidence 344788888889999999999999999999999999877777777555554443331 12221 111110 111111
Q ss_pred --hcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHH
Q 041810 124 --TEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQ 201 (750)
Q Consensus 124 --veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er 201 (750)
+....+|.-+...-...-+.++.+.+..+.++..+.+++|..|.+.+++++..+...+.........+..|+.+....
T Consensus 83 ~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~l 162 (593)
T PF06248_consen 83 EELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSEL 162 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHH
Confidence 111111100000000011457788999999999999999999999999999999886443333345789999999999
Q ss_pred HHHHHHHHHHHhcC------CCC------------------ChH--HHHHHHHHHHhcCCCcHHHHHHHHHhH-HHHHHH
Q 041810 202 RQKLADQLAGTICQ------PST------------------RGV--ELRSAVLALKKLGDGPRSHTLLLKSHH-QRLQSY 254 (750)
Q Consensus 202 ~~~L~~~L~~~l~~------~s~------------------~~~--elr~aV~lL~rLG~~~~A~~lFL~~rs-~~L~~~ 254 (750)
+..|...|...... ++. ... .+...+..|-.||.-+.....|-+.-- ..|+-.
T Consensus 163 r~~L~~~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~Pl 242 (593)
T PF06248_consen 163 RENLQYQLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPL 242 (593)
T ss_pred HHHHHHHHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHH
Confidence 99999999877541 111 111 288999999999988765443333211 223333
Q ss_pred hhhcc----cc--cc-c--cccchhHHh-------HHHHHHHHHHHHHHHHhhcCCCCcch-hhhHHHHHHHHHHHHHHH
Q 041810 255 VQSLR----SS--SS-L--SGGALTATV-------SQLVFSTIAQAARDSLAVFGEEPAYS-SELVTWAVKETEDFALLL 317 (750)
Q Consensus 255 lr~L~----~e--g~-~--~~~~YI~~L-------S~~fFs~I~~t~~~f~~~F~d~~~~~-S~LV~Wa~~eie~f~~l~ 317 (750)
|..-. .+ ++ . ..+.|.... -..+|+.|..+..-....+...+.-. +-+..+...-.......+
T Consensus 243 I~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~~~~~~~~~l~~~~g~~i~~~ls~~l 322 (593)
T PF06248_consen 243 ISHPSSIVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLLSLPSSDSSLSESFGDHIWPRLSELL 322 (593)
T ss_pred hcCCCCcccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHH
Confidence 32100 00 01 0 012333221 25778888888777776664432211 345666666777777777
Q ss_pred HHHHhccc--cccCCcHHHHHHHHHHHHhhhhhhhcCCcc--hHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCccc
Q 041810 318 ERHILASA--AAAGGLRVVTETIQICLGHCSLLEARGLAL--SPVILRSFRPSVEHALSAYLKRIEKSSAALAAADDWLL 393 (750)
Q Consensus 318 ~rqv~~~~--~aa~~l~~~~ecv~~a~~~c~~L~~vGLDl--~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~ 393 (750)
-...+.+. .....+.....-++.+...+..|++.|+-- ...|.......=...+..-+..+.+..+..+..|.+..
T Consensus 323 I~~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~lgf~~~~~~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm~~~~~~~ 402 (593)
T PF06248_consen 323 ISNCLSPAIPTSASELQEFEEVLESVEEFEEALKELGFLSSDNTELSEFVDNIETHFANKRCQDILDKARDLMLRDLHDT 402 (593)
T ss_pred HHhhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCcCCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 77765543 122355555667777888899999999822 23333333333333444555566777888888888775
Q ss_pred c-CCCC---CCCCC-----------------C----CCCCcccCCCCccccchhHHHHHHHHHHHHhhhccccccccchh
Q 041810 394 A-YPPA---GARPF-----------------S----STNSLNTAVGSQPKLSTSAHKFNALVQELLEDIGPLENLKLDGP 448 (750)
Q Consensus 394 ~-~~~~---~~~~~-----------------~----g~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~ 448 (750)
. -.|. ..... . ...... -.-..|..|.|+..|+.++.+.+.+++. -+......
T Consensus 403 v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~c~IS~s~~~l~~L~~~~L~ea~~-~~~~~a~~ 480 (593)
T PF06248_consen 403 VKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSL-FQFPRCRISKSAQELVELAHQTLKEACK-SSERCAAQ 480 (593)
T ss_pred eEecccccccCCCCCCCcccchhhcccchhcccCcccccccc-ccCCcceechhHHHHHHHHHHHHHHHhc-CChhhHHH
Confidence 4 2211 00000 0 011011 1225679999999999999999999933 34445555
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCcchhhccccccchhccccchHHHHHHH-HhHHHHHHhHHHHHH
Q 041810 449 ALDGVFQAFNSYVSLLINALPGSTENEENLEGFSNKIVSMAETESQQVALL-ANASLLADELLPRAA 514 (750)
Q Consensus 449 ~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~qq~~ll-~Na~~l~d~llp~~~ 514 (750)
+...+.++|.-|...+ |.... +.=++.+|+.++. .|+.||+..++-...
T Consensus 481 l~~~~r~i~~ly~~~v----P~~h~-------------~~l~~ip~~aalf~NdC~ylah~l~~l~~ 530 (593)
T PF06248_consen 481 LFQTARDIFELYRAVV----PVYHK-------------KLLESIPQQAALFHNDCMYLAHHLLTLGH 530 (593)
T ss_pred HHHHHHHHHHHHHHHc----cHHHH-------------hhcccccHHHHhHhcchHHHHHHHHHhHH
Confidence 6666777777777543 22110 1115567886665 679999998887765
No 11
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=98.61 E-value=0.00012 Score=88.71 Aligned_cols=405 Identities=15% Similarity=0.161 Sum_probs=245.1
Q ss_pred hhhhccCCCCChhHHHHHhhhcCCHH----H----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHH
Q 041810 24 RLKAFKSSQFDPDAYVASKSQHMNEK----E----IRHLCSYLVELKKASAEEMRRCVYANYAAFI----RTSKEISVLE 91 (750)
Q Consensus 24 ~~~~f~~~~Fdpe~Yv~~ll~~~~e~----e----L~~~~~~L~~lk~~t~sdLqknVY~NY~~FI----~aSkEIs~LE 91 (750)
|+..|.+++|||-+||+..++..+.+ . +-.+..+|+-..++++.. +-+.=.+=+ ++.+||..|+
T Consensus 1 d~s~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~----le~~~~q~l~~~Pr~~~ev~~l~ 76 (766)
T PF10191_consen 1 DLSAFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNAS----LEETSQQALQRVPRVLREVDRLR 76 (766)
T ss_pred ChhhhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhccHHHHHHHHHH
Confidence 46789999999999999999954332 2 445555555444444433 334444444 6899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhh--hhhhh------hhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCH
Q 041810 92 GQLLSMRNLLATQSALVQGLAEGAR--IDSLF------AVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRV 163 (750)
Q Consensus 92 ~Em~~L~~lLs~q~~lI~~L~~~~~--l~~L~------e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~f 163 (750)
.|...|++-|..-...+........ +..|. .+.+. +. + -+.+...|- .+-.++|..++.+++
T Consensus 77 ~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~-a~-------~-~L~EA~~w~-~l~~~v~~~~~~~d~ 146 (766)
T PF10191_consen 77 QEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEA-AR-------E-TLQEADNWS-TLSAEVDDLFESGDI 146 (766)
T ss_pred HHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHH-HH-------H-HHHHHHhHH-HHHHHHHHHHhcCCH
Confidence 9999999888777766665433221 11111 11111 11 0 011344565 488899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCChHHHHHHHHHHHhcCCCcHH
Q 041810 164 DEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLAD----QLAGTICQPSTRGVELRSAVLALKKLGDGPRS 239 (750)
Q Consensus 164 eeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~----~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A 239 (750)
+.+.+.+...++.+.-..+.|+-. .=+..++.-+++|.. +|...+.+ -....++..+..+.++|+.++.
T Consensus 147 ~~~a~~l~~m~~sL~~l~~~pd~~-----~r~~~le~l~nrLEa~vsp~Lv~al~~--~~~~~~~~~~~if~~i~R~~~l 219 (766)
T PF10191_consen 147 AKIADRLAEMQRSLAVLQDVPDYE-----ERRQQLEALKNRLEALVSPQLVQALNS--RDVDAAKEYVKIFSSIGREPQL 219 (766)
T ss_pred HHHHHHHHHHHHHHHHHcCCCchh-----HHHHHHHHHHHHHHHHhhHHHHHHHHh--cCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999888877332 222333333333333 44444443 3357899999999999999999
Q ss_pred HHHHHHHhHHHHHHHhhhcccccc-ccccchhHHhHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHHH
Q 041810 240 HTLLLKSHHQRLQSYVQSLRSSSS-LSGGALTATVSQLVFSTIAQAARDSLAVFGEEPAYSSELVTWAVKETEDFALLLE 318 (750)
Q Consensus 240 ~~lFL~~rs~~L~~~lr~L~~eg~-~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~eie~f~~l~~ 318 (750)
...|-++|...++..=........ .....++...-..+.+.+..=..|...+|++... .+..-..+-+......|.
T Consensus 220 ~~~Y~~~r~~~l~~~W~~~~~~~~~~~~~~~L~~fyd~ll~~l~~E~~w~~~vF~~~~~---~~~~ll~~~L~~L~PS~~ 296 (766)
T PF10191_consen 220 EQYYCKCRKAPLQRLWQEYCQSDQSQSFAEWLPSFYDELLSLLHQELKWCSQVFPDESP---VLPKLLAETLSALQPSFP 296 (766)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchh---HHHHHHHHHHHhcCccHH
Confidence 999999999999888766544442 1225677777788888888888999999998632 233333333333333333
Q ss_pred HHHhccc-cccC--CcHHHHHHHHHHHHhhhhhhh--cC----Cc---chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041810 319 RHILASA-AAAG--GLRVVTETIQICLGHCSLLEA--RG----LA---LSPVILRSFRPSVEHALSAYLKRIEKSSAALA 386 (750)
Q Consensus 319 rqv~~~~-~aa~--~l~~~~ecv~~a~~~c~~L~~--vG----LD---l~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~ 386 (750)
.++-..- .+.+ .|....++-+++...+..|+. .. .+ +..++..++.|. ......|-..=+..+...+
T Consensus 297 ~~l~~al~~~~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~~~l~~~~~l~~al~~PF-~~~q~~Yg~lE~~~L~~~L 375 (766)
T PF10191_consen 297 SRLSSALKRAGPETKLETLIELYQATEHFARNLEHLLSSLPGESNLSKVEELLQALFEPF-KPYQQRYGELERRFLSAQL 375 (766)
T ss_pred HHHHHHHhhcCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 3321110 0112 366667777776655544443 11 11 222333333333 3333333322222222211
Q ss_pred hccCccccCCCCCCCCCCCCCCcccCCCCccccchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHH
Q 041810 387 AADDWLLAYPPAGARPFSSTNSLNTAVGSQPKLSTSAHKFNALVQELLEDIGPLENLKLDGPALDGVFQAFNSYVSLLIN 466 (750)
Q Consensus 387 ~~d~W~~~~~~~~~~~~~g~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~ 466 (750)
.......+ .+ ..+-=.|..+..+....+.+=++-|..+..--=...++..|..+|..|+..+..
T Consensus 376 -----~~l~~~~~--~~---------~d~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~y~~~~~~ 439 (766)
T PF10191_consen 376 -----SALDLESA--EL---------SDAVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQYLSSLTA 439 (766)
T ss_pred -----HhcccCCC--cH---------HHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 11111000 00 012225677778888888888888888865554456678999999999997766
Q ss_pred hCC
Q 041810 467 ALP 469 (750)
Q Consensus 467 al~ 469 (750)
+++
T Consensus 440 ~l~ 442 (766)
T PF10191_consen 440 TLR 442 (766)
T ss_pred HHH
Confidence 554
No 12
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=98.58 E-value=0.00033 Score=78.51 Aligned_cols=339 Identities=15% Similarity=0.210 Sum_probs=217.2
Q ss_pred CCCChhHHHHHhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 31 SQFDPDAYVASKSQ-HMNEKEIRHLCSYLVELKKASAEEMRRCVYANY-------AAFIRTSKEISVLEGQLLSMRNLLA 102 (750)
Q Consensus 31 ~~Fdpe~Yv~~ll~-~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY-------~~FI~aSkEIs~LE~Em~~L~~lLs 102 (750)
|+|||-.|++.++. +.+..+|..+-+.+.+.++.+++++.+.|-+.= ..+-.|-..|.+|-..+.+++..=.
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998 467789999999999999999999998885422 2244455567777777777776666
Q ss_pred HHHHHHHHHhhhhhhhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhh
Q 041810 103 TQSALVQGLAEGARIDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKH 182 (750)
Q Consensus 103 ~q~~lI~~L~~~~~l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~ 182 (750)
.-...|..++.++. .|-- +|-.+- .--+.+ +.++-|....+.|..++..|+|.++..++.-...++.....
T Consensus 82 ~sE~~V~~it~dIk--~LD~-----AKrNLT-~SIT~L-krL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~ 152 (383)
T PF04100_consen 82 ESEQMVQEITRDIK--QLDN-----AKRNLT-QSITTL-KRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKP 152 (383)
T ss_pred HHHHHHHHHHHHHH--HHHH-----HHHHHH-HHHHHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHc
Confidence 66666666666552 2210 000000 000001 56788999999999999999999999999998888855433
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC---------CCCChHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHH
Q 041810 183 RCTLSRSAIFSLQSAISEQRQKLADQLAGTICQ---------PSTRGVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQS 253 (750)
Q Consensus 183 ~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~---------~s~~~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~ 253 (750)
-.+++ .+..+..++...+..|.+++..++.. +......+..|+..+--||..- ++-++.-.-+..-.
T Consensus 153 yksi~--~I~~L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~--r~~li~wf~~~qL~ 228 (383)
T PF04100_consen 153 YKSIP--QIAELSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDV--REELIDWFCNKQLK 228 (383)
T ss_pred ccCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchH--HHHHHHHHHHHHHH
Confidence 22222 57889999999999999999887542 1112347889999998888864 33333333333333
Q ss_pred Hhhhc-cccccccccchhHHhHHHHHHHHHHHHHHHH----hhcCCCCcch-hhhHHHHHHHHHHHHHHHHHHHhccccc
Q 041810 254 YVQSL-RSSSSLSGGALTATVSQLVFSTIAQAARDSL----AVFGEEPAYS-SELVTWAVKETEDFALLLERHILASAAA 327 (750)
Q Consensus 254 ~lr~L-~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~----~~F~d~~~~~-S~LV~Wa~~eie~f~~l~~rqv~~~~~a 327 (750)
..+.+ +..+. ..-++.+.+ .|.=++.+...|. .+||..=.+. ...+.+|.-==+.+..++.+. ...
T Consensus 229 eY~~iF~~~~e---~~~Ld~i~R-Ry~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~--~~~-- 300 (383)
T PF04100_consen 229 EYRRIFRENDE---AASLDNIDR-RYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKR--KSE-- 300 (383)
T ss_pred HHHHHHccccc---ccchhhHHH-HHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhc--CCC--
Confidence 33333 33333 244455553 3344444455554 5566431111 122233322222333344331 111
Q ss_pred cCCcHHHHHHHHHHHHhhhhhhh-c-C------------------CcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041810 328 AGGLRVVTETIQICLGHCSLLEA-R-G------------------LALSPVILRSFRPSVEHALSAYLKRIEKSSAALAA 387 (750)
Q Consensus 328 a~~l~~~~ecv~~a~~~c~~L~~-v-G------------------LDl~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~ 387 (750)
.+......|++.++..=..|.. . | -.|...+...|.|++---++.--+.+.+.+...+.
T Consensus 301 -~dv~~Ll~aLq~T~~FE~~L~~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~ 379 (383)
T PF04100_consen 301 -LDVKLLLKALQKTLEFEKELAKRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFIS 379 (383)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHh
Confidence 4556678899888776444443 2 1 25777889999999988888888888888999999
Q ss_pred ccCc
Q 041810 388 ADDW 391 (750)
Q Consensus 388 ~d~W 391 (750)
+++|
T Consensus 380 ~~~w 383 (383)
T PF04100_consen 380 EEKW 383 (383)
T ss_pred hcCC
Confidence 9999
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.53 E-value=1.3e-05 Score=86.46 Aligned_cols=220 Identities=17% Similarity=0.181 Sum_probs=161.0
Q ss_pred hccCCCCChhHHHHHhhh-c-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 27 AFKSSQFDPDAYVASKSQ-H-MNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQ 104 (750)
Q Consensus 27 ~f~~~~Fdpe~Yv~~ll~-~-~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q 104 (750)
.|=+++|||..|.-+.+. . .+.+++....++|....+.....|-+.|-+||..|..+-+.|..++.++..--..+.+.
T Consensus 7 ~yF~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~ 86 (291)
T PF10475_consen 7 IYFDEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNL 86 (291)
T ss_pred hhcCCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344569999999755444 4 56789999999999999999999999999999999999999999999998888887777
Q ss_pred HHHHHHHhhhhh-----hhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHh
Q 041810 105 SALVQGLAEGAR-----IDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVRE 179 (750)
Q Consensus 105 ~~lI~~L~~~~~-----l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~ 179 (750)
+..+....+... +-.+..++..... +. + .+ +.++-+.+.-..++.++++++|..|++++..+++.+..
T Consensus 87 R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~--ll---~-~L-~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~ 159 (291)
T PF10475_consen 87 RRNLKSADENLTKSGLEILRLQRKRQNLKK--LL---E-KL-EQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEE 159 (291)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HH---H-HH-HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 777777766542 1111111111000 11 0 01 34667888888999999999999999999999999988
Q ss_pred hhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCChHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhh
Q 041810 180 AKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQ--PSTRGVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQS 257 (750)
Q Consensus 180 ~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~--~s~~~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~ 257 (750)
+.+-. +++.+..++.+....+.++|-..+.. ....+..=.+....-.-||+...+++-+..+....|......
T Consensus 160 l~~~~-----c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~~f~~~i~~~~~~ 234 (291)
T PF10475_consen 160 LKGYS-----CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQMHFTSAIHSTTFS 234 (291)
T ss_pred cccch-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 76654 67888888888888888887777653 134444444445555667777777777766666666555554
Q ss_pred c
Q 041810 258 L 258 (750)
Q Consensus 258 L 258 (750)
+
T Consensus 235 v 235 (291)
T PF10475_consen 235 V 235 (291)
T ss_pred H
Confidence 3
No 14
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=97.31 E-value=0.00013 Score=69.80 Aligned_cols=88 Identities=18% Similarity=0.330 Sum_probs=14.1
Q ss_pred hhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 25 LKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQ 104 (750)
Q Consensus 25 ~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q 104 (750)
.+.|..|+|||+.||.+..+.. .|..++++|......+.++|-..|=+||..||.-|..+..++..+.+|+.-|...
T Consensus 5 ~~~F~~~~Fd~d~Fl~~~~~~~---~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~~~ 81 (133)
T PF06148_consen 5 KEEFTKPDFDVDEFLSSNRRYV---SLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLSQF 81 (133)
T ss_dssp ------------------------------------------------------------------------HHHHHHHH
T ss_pred ccccCCCCCCHHHHHHHccCCC---CHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHHHH
Confidence 4678999999999999944444 4556667999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHhhhh
Q 041810 105 SALVQGLAEGA 115 (750)
Q Consensus 105 ~~lI~~L~~~~ 115 (750)
+..|.+..+.+
T Consensus 82 ~~~v~~~~~~l 92 (133)
T PF06148_consen 82 REEVESVRDEL 92 (133)
T ss_dssp HHHHHHHHHS-
T ss_pred HHHHHHHHHHH
Confidence 88887766543
No 15
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.09 E-value=1.1 Score=53.25 Aligned_cols=410 Identities=15% Similarity=0.166 Sum_probs=235.0
Q ss_pred hhhhhhccCCCCChhHHHHHhhh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 22 SDRLKAFKSSQFDPDAYVASKSQ-HMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNL 100 (750)
Q Consensus 22 ~~~~~~f~~~~Fdpe~Yv~~ll~-~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~l 100 (750)
..-.+.|.+|+|+.=.|+..++- +.+..+|..+.+++....+..+.+++.+|-.+=|.=-+.-+-..+.+.-|.+|.+.
T Consensus 8 ~~I~q~~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~eL~~~ 87 (793)
T KOG2180|consen 8 YDINQMIPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEELFQK 87 (793)
T ss_pred HHHHHhcCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHHHHHH
Confidence 34467888899999999999987 57889999999999999999999999999766555444433344444444444444
Q ss_pred HHHHHH-------HHHHHhhhhhhhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHH
Q 041810 101 LATQSA-------LVQGLAEGARIDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEG 173 (750)
Q Consensus 101 Ls~q~~-------lI~~L~~~~~l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~ 173 (750)
+.+.++ .|..++.++. .| +.+|-.+- .--+.+ +.+.-|.+--+.|.+++..|.|.+|+..+...
T Consensus 88 i~eiks~ae~Te~~V~eiTrdIK--qL-----D~AKkNLT-tSiT~L-~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai 158 (793)
T KOG2180|consen 88 IQEIKSVAESTEAMVQEITRDIK--QL-----DFAKKNLT-TSITTL-HRLHMLVTGVESLNALLSKRSYGEAASPLQAI 158 (793)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH--hh-----hHHHhhHH-HHHHHH-HHHHHHHHHHHHHHHHHhhccHHHHHhHHHHH
Confidence 444333 3333333321 11 00110000 000001 45677889999999999999999999999887
Q ss_pred HHHHHh---hhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH----------HHHHHHHHhcCCCcHHH
Q 041810 174 QNTVRE---AKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVEL----------RSAVLALKKLGDGPRSH 240 (750)
Q Consensus 174 ~~~l~~---~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~el----------r~aV~lL~rLG~~~~A~ 240 (750)
-.+++. |++.+ .+..+...++..+..|..++.+.+... .++++. ..++..+--|. +.-+
T Consensus 159 ~~ll~~F~~Yk~v~-----~I~~Ls~si~~~k~~l~~qi~~df~~~-F~~~~~~~~~~~l~~l~daC~v~d~le--psvr 230 (793)
T KOG2180|consen 159 LQLLNHFIAYKSVD-----EIANLSESIDKLKKSLLSQIFQDFKAA-FSGGETHEEALLLQKLSDACLVVDALE--PSVR 230 (793)
T ss_pred HHHHHHHHHhcchH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCccHHHHHHHHHHHHHHhC--CccH
Confidence 777754 44444 578899999999999999999887642 122222 22222222121 1223
Q ss_pred HHHHHHhHHHHHHHhhhccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCC----CCcch-hhhHHHHHHHHHHHHH
Q 041810 241 TLLLKSHHQRLQSYVQSLRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGE----EPAYS-SELVTWAVKETEDFAL 315 (750)
Q Consensus 241 ~lFL~~rs~~L~~~lr~L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d----~~~~~-S~LV~Wa~~eie~f~~ 315 (750)
+.+++.+=...-....++=.++.- ...++++.+.+ .-++.-..+|...|+. .=.+. -..+.+|..==+....
T Consensus 231 eelIkwf~~qqL~ey~~IF~en~E--~a~LDkidrRY-~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~ 307 (793)
T KOG2180|consen 231 EELIKWFCSQQLEEYEQIFRENEE--AASLDKLDRRY-AWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLES 307 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHh--hhhhhhHHHHH-HHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHH
Confidence 333332222222222222222211 35556665443 3445556666655542 21111 2334455544444555
Q ss_pred HHHHHHhccccccCCcHHHHHHHHHHHHhhhhhhh-cC-------------------CcchHHHHhhhhHHHHHHHHHHH
Q 041810 316 LLERHILASAAAAGGLRVVTETIQICLGHCSLLEA-RG-------------------LALSPVILRSFRPSVEHALSAYL 375 (750)
Q Consensus 316 l~~rqv~~~~~aa~~l~~~~ecv~~a~~~c~~L~~-vG-------------------LDl~~~L~~lL~p~ve~al~~~~ 375 (750)
++++.--. .+.....-+++.++..=..|.- .| -.|...+...|.|++.--++..-
T Consensus 308 Il~~~~~~-----~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qe 382 (793)
T KOG2180|consen 308 ILKRRKKE-----PDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQE 382 (793)
T ss_pred HHHHhhhC-----ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHH
Confidence 55554421 3556667777777766555543 22 36777888999999888888777
Q ss_pred HHHHHHHHHHHhccCccccCCCCCCCCCCCCCCcccCCCCccccchhHHHHHHHHHHHHhhhcccccc-c-cchhHHHHH
Q 041810 376 KRIEKSSAALAAADDWLLAYPPAGARPFSSTNSLNTAVGSQPKLSTSAHKFNALVQELLEDIGPLENL-K-LDGPALDGV 453 (750)
Q Consensus 376 ~~i~e~i~~~~~~d~W~~~~~~~~~~~~~g~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~-~-L~~~~~~~l 453 (750)
..+.+-+...+.+.+|... |.+. ++.....|.+|+.-|.. +..-+-.+..|..- + +.+... ..
T Consensus 383 k~l~ellek~v~e~~~~~~-p~~~------------~~~~s~vlpSsadlF~~-Ykkcltq~~~Ls~n~dpl~~~~~-~f 447 (793)
T KOG2180|consen 383 KELSELLEKFVSEEKWDGE-PKSN------------TDEESLVLPSSADLFVA-YKKCLTQCSELSENNDPLIALLA-VF 447 (793)
T ss_pred HHHHHHHHHHHhhhccCCC-CCCC------------cccccccCccHHHHHHH-HHHHHHHHHHhccCCchHHHHHH-HH
Confidence 7788888888899999862 1111 11123456666665543 34444455555433 2 332222 44
Q ss_pred HHHHHHHHH-HHHHhCCCC
Q 041810 454 FQAFNSYVS-LLINALPGS 471 (750)
Q Consensus 454 ~~lf~~y~~-~l~~al~~~ 471 (750)
.+..+.|-. .|...+|..
T Consensus 448 ~k~LreYa~kil~~~lP~~ 466 (793)
T KOG2180|consen 448 SKWLREYAQKILLGNLPDT 466 (793)
T ss_pred HHHHHHHHHHHhhccCCcc
Confidence 445555554 334445554
No 16
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=96.99 E-value=0.0082 Score=57.46 Aligned_cols=90 Identities=20% Similarity=0.218 Sum_probs=76.1
Q ss_pred hhccCCCCChhHHHHHhhh-----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 26 KAFKSSQFDPDAYVASKSQ-----HMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNL 100 (750)
Q Consensus 26 ~~f~~~~Fdpe~Yv~~ll~-----~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~l 100 (750)
+.|-+|+|||..|...++. +.+.-++..--.+|..-.+.++..|++.|..||...+.-+..|..+++.+..++..
T Consensus 1 e~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~ 80 (132)
T PF10392_consen 1 EAFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSS 80 (132)
T ss_pred CCCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 3588999999999999998 23345666666777777789999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHhhhh
Q 041810 101 LATQSALVQGLAEGA 115 (750)
Q Consensus 101 Ls~q~~lI~~L~~~~ 115 (750)
+......+.-|...+
T Consensus 81 v~~L~~s~~RL~~eV 95 (132)
T PF10392_consen 81 VESLQSSYERLRSEV 95 (132)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888777777766655
No 17
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=96.80 E-value=0.19 Score=58.36 Aligned_cols=365 Identities=15% Similarity=0.194 Sum_probs=158.6
Q ss_pred HHHHHHHHHHHHHHHhhcC-------CCC--cchhhhHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhh
Q 041810 275 QLVFSTIAQAARDSLAVFG-------EEP--AYSSELVTWAVKETEDFALLLERHILASAAAAGGLRVVTETIQICLGHC 345 (750)
Q Consensus 275 ~~fFs~I~~t~~~f~~~F~-------d~~--~~~S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~~~~ecv~~a~~~c 345 (750)
.-||+.|...++++...+. +.. .+.+....|++..+..-..-+...+.... .+-+..+.-|.-++..=
T Consensus 31 Ew~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl~~~l~~~~---~~~~~l~HlI~e~~~FD 107 (494)
T PF04437_consen 31 EWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKLRSDLPELL---DDPSLLSHLIDEILSFD 107 (494)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHHHHHH--TT---S-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHHHHHHHhhc---cChhHHHHHHHHHHHHH
Confidence 4566666666666632221 111 23466677877777777777777664333 45566777777766665
Q ss_pred hhhhhc-CCcc-------hHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCCCCCcccCCCCc
Q 041810 346 SLLEAR-GLAL-------SPVI-LRSFRPSVEHALSAYLKRIEKSSAALAAADDWLLAYPPAGARPFSSTNSLNTAVGSQ 416 (750)
Q Consensus 346 ~~L~~v-GLDl-------~~~L-~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~g~~~~~~~~~~~ 416 (750)
..|.+. |.+- .-+. ...+.+=++--.+...+|..+ | ..++|.|...+.-. ..+...
T Consensus 108 ~~L~~~~~y~~d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~-i--~~s~~aw~~~~~~~------------~~~~~~ 172 (494)
T PF04437_consen 108 KELRSLYGYPGDWQGSTLDVLCQPDWFDRWLNAEKEFALERFDE-I--ISSPDAWQIDYDDV------------EADSDE 172 (494)
T ss_dssp HHHHHTS---S------CGGGS-HHHHHHHHHHHHHHHHHHHH------------------H------------TTSSGG
T ss_pred HHHHHHcCCCCccchhHHHHhcchHHHHHHHHHHHHHHHHHHhh-h--cccchhhhhhhccc------------cCCchh
Confidence 555552 3332 2222 222222222223333444443 2 34688898774221 012345
Q ss_pred cccchhHHHHHHHHHHHHhhhccccccccchhHH-HHHHHHHHHHHHHHHHhCCCCCc----chhhccccccchhccccc
Q 041810 417 PKLSTSAHKFNALVQELLEDIGPLENLKLDGPAL-DGVFQAFNSYVSLLINALPGSTE----NEENLEGFSNKIVSMAET 491 (750)
Q Consensus 417 ~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~-~~l~~lf~~y~~~l~~al~~~~~----~~~~~~~~~~~~v~~a~t 491 (750)
.+.|.++.+|++++..+.+.+.+|.+....--.+ +.=..+++.|.+.|...+..-.. ..... +. ..
T Consensus 173 ~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L~~~~~~~~~~~s~~~~~~---~~------~~ 243 (494)
T PF04437_consen 173 LKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRLSQSLEAFESSTSTLASLS---GD------SG 243 (494)
T ss_dssp GG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHHHHHHHHHHHT----SCEE---HH------HH
T ss_pred hcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhcc---CC------ch
Confidence 7999999999999999999999998877655444 44445666666666554211000 00000 00 11
Q ss_pred hHHHHHHHHhHHHHHHhHHHHHHH------hhccCcCCc--ccCCcCCcC-CCCCCCh-hhHHHHHHHHHHHHHHHHHHH
Q 041810 492 ESQQVALLANASLLADELLPRAAL------KLLPLSSNR--MEMTPRRAS-DRQNRFP-EQREWKRKLQRLVDRLRDSFC 561 (750)
Q Consensus 492 ~~qq~~ll~Na~~l~d~llp~~~~------~~~~~~~~~--~~~~~~~~~-~~~~~~~-e~~e~~~~l~~~~~kl~~~fc 561 (750)
..+=..++.+|.||...|---... ++......+ ..+..++.. ...+.+- .....++...++.+++-++++
T Consensus 244 l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~ 323 (494)
T PF04437_consen 244 LERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANETSSEEGSIFDETISAYEKLRKRMLESIVDRVV 323 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHHHTT--S-TTHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhcccccccccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223367788888888644222111 111111100 000000000 0001111 223344444445555555555
Q ss_pred HHHHHHhh-cCcccccccchhhHhhccCCCCCCCCCCChHHHHHHHHHHHHHH-hhhhhhcchhHHHHHHHHHHHHHHHH
Q 041810 562 RTHALDII-FTEDGEIRLNAEIYTCMDESMEEPEWFPSPIFQELFIKLTRMAS-IASDMFVGRERFATILLMRLTETVIL 639 (750)
Q Consensus 562 ~~~~~~~i-~~~~~~~~l~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~-~~~~~~~g~e~~~~~ll~rl~e~v~~ 639 (750)
+.+=-.+= |.. ...|..+....+.-.+-||+=+-..+..|++.=. +.. .+... ....+-+++.+.+..
T Consensus 324 ~~~k~~lk~Y~k-------~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~-~L~~~--~f~~i~r~ia~~l~~ 393 (494)
T PF04437_consen 324 KEFKASLKAYFK-------RSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLER-SLPPA--DFRRIWRRIASKLDD 393 (494)
T ss_dssp HHHHHHTHHHHT---------GGGT-------------GGGHHHHHHHHHHHHHHHT-S--HH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-------ccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHH-HcCHH--HHHHHHHHHHHHHHH
Confidence 44322221 221 1112222222122234677766666666644333 333 22222 244556666666655
Q ss_pred HhcCChhhHHhhhcCCccCCccchhhhhhHHHHHHHHHhcCCCcCh
Q 041810 640 WLADDQSFWAEIEEGPKPLGPLGLQQFYLDMEFVMLFSSQGRYLSR 685 (750)
Q Consensus 640 ~ls~~~~~w~~~e~~~~~~~~~glqq~~Ldm~f~~~~a~~g~~~s~ 685 (750)
| +|+.|=- .+.+.+.|..||..||+.+..+ ++.|..+
T Consensus 394 ~------l~~~Il~-~n~Fs~~Ga~Ql~~D~~~L~~~--~~~~~~~ 430 (494)
T PF04437_consen 394 Y------LWESILM-SNKFSRAGAAQLQFDMRALFSV--FSQYTPR 430 (494)
T ss_dssp H------HHHTTTT-TS-B-HHHHHHHHHHHHHHHTT--S--TTSG
T ss_pred H------HHHHhhh-cCeeChhHHHHHHHHHHHHHHH--HHhhccC
Confidence 5 6764433 3388999999999999887655 4777644
No 18
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.48 E-value=1.3 Score=51.23 Aligned_cols=93 Identities=17% Similarity=0.245 Sum_probs=70.6
Q ss_pred CchhhhhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 20 TLSDRLKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRN 99 (750)
Q Consensus 20 ~~~~~~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~ 99 (750)
++==+-..|..+|||.|.|+....+..+.++||+ +|.---..+...|-..+-+.|..|+--|--...|..-+.+|+.
T Consensus 20 kLcFdk~eFmkedFdve~f~s~~R~~v~letLrd---dLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~q 96 (705)
T KOG2307|consen 20 KLCFDKTEFMKEDFDVERFMSLARQKVDLETLRD---DLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQ 96 (705)
T ss_pred ccccChhhhccccCCHHHHHHHHhccCCHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHh
Confidence 4555678899999999999999988888777764 4444444666778889999999999988877777777777777
Q ss_pred HHHHHHHHHHHHhhhh
Q 041810 100 LLATQSALVQGLAEGA 115 (750)
Q Consensus 100 lLs~q~~lI~~L~~~~ 115 (750)
-|...+.-|.++...+
T Consensus 97 pL~qlreei~s~rgsV 112 (705)
T KOG2307|consen 97 PLNQLREEIKSTRGSV 112 (705)
T ss_pred HHHHHHHHHHHHHhhH
Confidence 7766666666544433
No 19
>KOG4182 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.46 E-value=6.3 Score=44.99 Aligned_cols=220 Identities=14% Similarity=0.147 Sum_probs=127.8
Q ss_pred hhhhccCCCCChhHHHHHhhhcC-----------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 041810 24 RLKAFKSSQFDPDAYVASKSQHM-----------NEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEG 92 (750)
Q Consensus 24 ~~~~f~~~~Fdpe~Yv~~ll~~~-----------~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~ 92 (750)
|+..|.+..|||-.||+..++.. -++-|++++.+|+-........+...--.-...-=+++|+...|..
T Consensus 2 Dlg~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~ 81 (828)
T KOG4182|consen 2 DLGAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQA 81 (828)
T ss_pred CCccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHH
Confidence 35578999999999999998821 2356777777777666555555444433334445579999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhhhhhhhhhcCC-cc-ccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHH
Q 041810 93 QLLSMRNLLATQSALVQGLAEG--ARIDSLFAVTEDS-DD-DDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALA 168 (750)
Q Consensus 93 Em~~L~~lLs~q~~lI~~L~~~--~~l~~L~e~veg~-~~-e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ 168 (750)
|...|+..++...-.+...... -||.+| ++++.. ++ |--| ++ + ..-.-+..+..+|..-.+.++...|-+
T Consensus 82 Da~~Lq~kma~il~el~~aegesadCiAaL-aRldn~kQkleaA~---es-L-QdaaGl~nL~a~lED~Fa~gDL~~aad 155 (828)
T KOG4182|consen 82 DAHRLQEKMAAILLELAAAEGESADCIAAL-ARLDNKKQKLEAAK---ES-L-QDAAGLGNLLAELEDGFARGDLKGAAD 155 (828)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHH-HHhccHHHHHHHHH---HH-H-HhhccHHHHHHHHHHHhhcCCchhHHH
Confidence 9999998887654444433221 123333 122211 00 0000 00 0 111235567778888888999988888
Q ss_pred HHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHH----HHHHHhcCCCCChHHHHHHHHHHHhcCCCcHHHHHHH
Q 041810 169 ALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLAD----QLAGTICQPSTRGVELRSAVLALKKLGDGPRSHTLLL 244 (750)
Q Consensus 169 ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~----~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A~~lFL 244 (750)
-+...++.+......+ .+...+.+++.-..+|.. .|.+.+..+.+ .....-+..++|.|+..+--..|=
T Consensus 156 kLaalqkcL~A~~ela-----efAe~qkQlE~~edRLEAlaqPrltda~a~~kt--d~AQd~r~I~irIgRfkqLelqY~ 228 (828)
T KOG4182|consen 156 KLAALQKCLHAQEELA-----EFAERQKQLEDFEDRLEALAQPRLTDAFAEGKT--DQAQDFRQIFIRIGRFKQLELQYR 228 (828)
T ss_pred HHHHHHHHHHHHHHhH-----HHHHHHHHHHHHHHHHHHHcCchHHHHHHccCh--HHHHHHHHHHHHHhhhHHHHHHHH
Confidence 8888777775433332 233333333333333222 33333332222 234455678899999887766666
Q ss_pred HHhHHHHHHHhh
Q 041810 245 KSHHQRLQSYVQ 256 (750)
Q Consensus 245 ~~rs~~L~~~lr 256 (750)
+.+.+-++..-.
T Consensus 229 ~Vq~k~ikQlWe 240 (828)
T KOG4182|consen 229 AVQKKFIKQLWE 240 (828)
T ss_pred HHHHHHHHHHHH
Confidence 666665554433
No 20
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.46 Score=57.27 Aligned_cols=152 Identities=16% Similarity=0.121 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhh
Q 041810 49 KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIR-------TSKEISVLEGQLLSMRNLLATQSALVQGLAEGARIDSLF 121 (750)
Q Consensus 49 ~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~-------aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~~L~ 121 (750)
+++....+.|.+-=+.....||+.|.++|..|-+ ++.+|.+-..-...+++-|.+.+.+|++=.+.. ..+|
T Consensus 46 e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeL--qklw 123 (982)
T KOG3691|consen 46 EPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDEL--QKLW 123 (982)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH--HHHH
Confidence 4444444445554556788999999988888765 888999999999999999999998886544433 2333
Q ss_pred hhhcCCccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHh-hhhcCCCChHHHHHHHHHHHH
Q 041810 122 AVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVRE-AKHRCTLSRSAIFSLQSAISE 200 (750)
Q Consensus 122 e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~-~~~~~~~~~~~~~~i~~ki~e 200 (750)
. ++ .+.. + +-..+ +.++-+..+|+.+.-||+-++|-+|-+++.++-..+.. +.... .+..++.+++-
T Consensus 124 ~--~~-~q~K-~--Vi~vL-~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VE-----gLs~l~~ele~ 191 (982)
T KOG3691|consen 124 A--EN-SQYK-K--VIEVL-KEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVE-----GLSDLRSELEG 191 (982)
T ss_pred H--hh-hhHH-H--HHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-----hhhHHHHHHHH
Confidence 2 11 1100 0 00001 34667889999999999999999999999999888753 22222 35678888888
Q ss_pred HHHHHHHHHHHHhc
Q 041810 201 QRQKLADQLAGTIC 214 (750)
Q Consensus 201 r~~~L~~~L~~~l~ 214 (750)
+...|.+.|.+++.
T Consensus 192 ~~~~L~~~L~eELv 205 (982)
T KOG3691|consen 192 LLSHLEDILIEELV 205 (982)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888888876
No 21
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=94.87 E-value=0.36 Score=46.86 Aligned_cols=123 Identities=15% Similarity=0.177 Sum_probs=83.5
Q ss_pred hhhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-------HHHHHHHHHHHHHH
Q 041810 24 RLKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIR-------TSKEISVLEGQLLS 96 (750)
Q Consensus 24 ~~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~-------aSkEIs~LE~Em~~ 96 (750)
+=..+-.++|+|=..+-.++-+.+. ++.+...++.++++.++..|+.-|-+||..|=+ +...|+.-...+.+
T Consensus 12 ~W~~~~~~~~~pv~~al~~ld~ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~ 90 (142)
T PF04048_consen 12 EWPFMLTDDFNPVELALSLLDDSSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRE 90 (142)
T ss_pred HHHHHhcCCCcHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445668999999999888876543 688888999999999999999999999999976 55556666666677
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHH
Q 041810 97 MRNLLATQSALVQGLAEGARIDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEV 156 (750)
Q Consensus 97 L~~lLs~q~~lI~~L~~~~~l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv 156 (750)
++.-|.+-+..+.+-+... ..||..... .++ .-+ .+ +.++.+..+|+.+|.
T Consensus 91 lK~~L~~ak~~L~~~~~eL--~~L~~~s~~-~~~----mi~-iL-~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 91 LKESLQEAKSLLGCRREEL--KELWQRSQE-YKE----MIE-IL-DQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHhcCCHHH--HHHHHHHHH-HHH----HHH-HH-HHHHHHHHhHHHHhc
Confidence 7776766666665433322 333322111 000 000 11 456788889998874
No 22
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=87.61 E-value=22 Score=39.48 Aligned_cols=83 Identities=19% Similarity=0.219 Sum_probs=46.3
Q ss_pred ccccchhHHHHHHHHHHHHhhhccccccccchhHH------------HHHHHHHHHHHHHHHHhCCCCCcchhhcccccc
Q 041810 416 QPKLSTSAHKFNALVQELLEDIGPLENLKLDGPAL------------DGVFQAFNSYVSLLINALPGSTENEENLEGFSN 483 (750)
Q Consensus 416 ~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~------------~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~ 483 (750)
-..+|..+..|.+.+-++-+-+..+....-.+.-. +.-...|..|+..++.+|-..-+. +.
T Consensus 140 Vh~lT~~vm~yl~~L~~y~~~l~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ii~~L~~~Le~------ks- 212 (371)
T PF03081_consen 140 VHPLTSYVMNYLKRLAEYRDTLESILQSDGDGNWLSESGPPSESSSSTDSQSSLSSYIADIISALESNLEA------KS- 212 (371)
T ss_dssp --HHHHHHHHHHHHHHCTHHHHHHCCCTT-GGGGS-SS--GGGS---CCHHHHHHHHHHHHHHHHHHHHHH------HH-
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCccchHHHHHHHHHHHHHHHHHH------HH-
Confidence 45999999999999999988888886554321100 113334444444444443321100 00
Q ss_pred chhccccchHHHHHHHHhHHHHHH
Q 041810 484 KIVSMAETESQQVALLANASLLAD 507 (750)
Q Consensus 484 ~~v~~a~t~~qq~~ll~Na~~l~d 507 (750)
+..+ ..--+++|++.|..||..
T Consensus 213 ~~y~--d~~l~~iFLlNN~~yI~~ 234 (371)
T PF03081_consen 213 KSYK--DPALRYIFLLNNYHYILK 234 (371)
T ss_dssp CCHC--THHHHHHHHHHHHHHHHC
T ss_pred hccc--cHHHHHHHHHHHHHHHHH
Confidence 0010 112278999999999994
No 23
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=80.72 E-value=95 Score=34.14 Aligned_cols=57 Identities=19% Similarity=0.273 Sum_probs=29.3
Q ss_pred hhHHhh-hcCCccCCccchhhhhhHHHHHHHHHhcC-----C---Cc--ChhHHHHHHHHHHHHHHHH
Q 041810 646 SFWAEI-EEGPKPLGPLGLQQFYLDMEFVMLFSSQG-----R---YL--SRNLQQVIKNIIARAIEVV 702 (750)
Q Consensus 646 ~~w~~~-e~~~~~~~~~glqq~~Ldm~f~~~~a~~g-----~---~~--s~~~~~~~~~~~~~a~~~~ 702 (750)
.|++.+ .+.++.+.+.|++||-+|++|+..||..- + -. -..++|.++=+...-.+.|
T Consensus 218 ~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y 285 (311)
T PF04091_consen 218 SLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEY 285 (311)
T ss_dssp HHHHHHT---------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH-------
T ss_pred HHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHH
Confidence 455544 24788889999999999999999999554 1 11 1457777777766666777
No 24
>KOG2344 consensus Exocyst component protein and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.14 E-value=1.1e+02 Score=37.03 Aligned_cols=256 Identities=14% Similarity=0.143 Sum_probs=128.5
Q ss_pred CChHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhccccccc--------------cc---cchhHHhHHHHHHH
Q 041810 218 TRGVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLRSSSSL--------------SG---GALTATVSQLVFST 280 (750)
Q Consensus 218 ~~~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~eg~~--------------~~---~~YI~~LS~~fFs~ 280 (750)
...+.++..+.-++.-|...+.+..|...|...+...+..|+.+... .+ ..+++-+-.++|..
T Consensus 190 ~v~~dLk~Ia~~mi~~gy~~eC~~~Y~~vrk~i~~e~l~~L~~e~ls~~~vq~~~we~le~~I~~Wi~~~kv~v~~lf~~ 269 (623)
T KOG2344|consen 190 DVMTDLKAIAQRMIAAGYEKECFKVYKSIRKSILDESLVNLGVEKLSIEDVQRMDWEVLEGKIKKWIKAVKVAVSVLFEG 269 (623)
T ss_pred hhHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHhcCeeeccHHHHhhccHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34569999999999999999999999999999999999988877621 00 12223333555555
Q ss_pred HHHHHHHHHhhcCCCCcchhhhHH-HHHHHHHHHHHHHHHHHhccccc-cCCcHHHHHHHHHHHHhhhhhhhcCCcchHH
Q 041810 281 IAQAARDSLAVFGEEPAYSSELVT-WAVKETEDFALLLERHILASAAA-AGGLRVVTETIQICLGHCSLLEARGLALSPV 358 (750)
Q Consensus 281 I~~t~~~f~~~F~d~~~~~S~LV~-Wa~~eie~f~~l~~rqv~~~~~a-a~~l~~~~ecv~~a~~~c~~L~~vGLDl~~~ 358 (750)
=+..|.. +|.+. .... =|-.+|.+=+.+ ++++=.++ +.+=+...+-..+. ++.+. =-++.+-
T Consensus 270 E~~Lcd~---If~~~-----~~~~~~cF~eI~~~~~~---~ll~F~eava~~kr~pEklf~iL----d~y~~-i~~l~p~ 333 (623)
T KOG2344|consen 270 EKKLCDQ---IFSDL-----ESIVESCFPEIVKEAAL---QLLSFPEAVAISKRSPEKLFKLL----DLYET-IVELRPD 333 (623)
T ss_pred HHHHHHH---HcCcc-----chHHHHHHHHHHHHHHH---HhhccchheeeccCCHHHHHHHH----HHHHH-HHHHHHH
Confidence 5555444 55543 1112 222222222211 22221100 00001111111111 11000 0134455
Q ss_pred HHhhhh----HHHHHHHHHHHHHHHHHHHHHHhccCcccc-CCCCCCCCCCCCCCcccCCCCccccchhHHHHHHHHHHH
Q 041810 359 ILRSFR----PSVEHALSAYLKRIEKSSAALAAADDWLLA-YPPAGARPFSSTNSLNTAVGSQPKLSTSAHKFNALVQEL 433 (750)
Q Consensus 359 L~~lL~----p~ve~al~~~~~~i~e~i~~~~~~d~W~~~-~~~~~~~~~~g~~~~~~~~~~~~~LT~S~~~F~~~v~~f 433 (750)
++.+|. +.+......-..++.+.+.....+-.=... .++.. +. .+|.-.+||.++..|.+.+-++
T Consensus 334 ie~lF~~~~~s~vr~~~~~~~~rL~~~~~~~~~efe~~I~~d~sk~--pv--------~gG~VHpLTryvmnyl~~L~dy 403 (623)
T KOG2344|consen 334 IERLFSDASCSEVRSQALSLLKRLGEGVRSIFVEFESAIRKDSSKT--PV--------PGGGVHPLTRYVMNYLNFLADY 403 (623)
T ss_pred HHHhccCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC--CC--------CCCCcChhHHHHHHHHHHHHHH
Confidence 555555 555566666666666666554422111111 11111 11 1124469999999999988877
Q ss_pred Hhhhcccccc-----ccchh--HHHHHHHHHHHHHHHHHHhCCCCCcchhhccccccchhccccchH-HHHHHHHhHHHH
Q 041810 434 LEDIGPLENL-----KLDGP--ALDGVFQAFNSYVSLLINALPGSTENEENLEGFSNKIVSMAETES-QQVALLANASLL 505 (750)
Q Consensus 434 ~ed~~~L~~~-----~L~~~--~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~-qq~~ll~Na~~l 505 (750)
-.-+..+.-- .+... ..+.-..++..|+--++.++.+.-+... +.. ...+ +-+|++.|..+|
T Consensus 404 ~~tL~~il~~~~~~~~~~~~~~~~~~~~s~l~~~~~~ii~~L~~nLd~Ks-------~~Y---~D~aL~~lFlmNN~~yi 473 (623)
T KOG2344|consen 404 KDTLEQLLMEDPVDTSLPKSESEDESSNSLLAVHIARIILALECNLDTKS-------KLY---KDPALSYLFLMNNLHYI 473 (623)
T ss_pred HHHHHHHHhccccccccCcccccccccccHHHHHHHHHHHHHHhhhHHHH-------hhc---cchhhHHHHHHhhHHHH
Confidence 6666555332 12222 1122223455555555555544322111 001 1111 338999999999
Q ss_pred HHhH
Q 041810 506 ADEL 509 (750)
Q Consensus 506 ~d~l 509 (750)
+..+
T Consensus 474 v~kv 477 (623)
T KOG2344|consen 474 VQKV 477 (623)
T ss_pred HHHH
Confidence 9643
No 25
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=76.36 E-value=14 Score=39.62 Aligned_cols=48 Identities=25% Similarity=0.338 Sum_probs=33.7
Q ss_pred CChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhHHHHHH
Q 041810 33 FDPDAYVASKSQHMNEKEIRHLCSYLVELKKASA------EEMRRCVYANYAAFIR 82 (750)
Q Consensus 33 Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~------sdLqknVY~NY~~FI~ 82 (750)
=+||.|++.+=+. |--||+++.+|.+-.+++. .+||...|+=...+|+
T Consensus 54 P~PEQYLTPLQQK--EV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIE 107 (305)
T PF15290_consen 54 PNPEQYLTPLQQK--EVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIE 107 (305)
T ss_pred CCHHHhcChHHHH--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4899999998554 5678888888877665544 3666666666666664
No 26
>PF01031 Dynamin_M: Dynamin central region; InterPro: IPR000375 Dynamin is a microtubule-associated force-producing protein of 100 Kd which is involved in the production of microtubule bundles. At the N terminus of dynamin is a GTPase domain (see IPR001401 from INTERPRO), and at the C terminus is a PH domain (see IPR001849 from INTERPRO). Between these two domains lies a central region of unknown function, which this entry represents.; GO: 0005525 GTP binding; PDB: 3ZVR_A 2AKA_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D 1JWY_B 1JX2_B 3SZR_A ....
Probab=66.90 E-value=42 Score=36.27 Aligned_cols=77 Identities=9% Similarity=0.139 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhccccccCCcHHHHHHHHHHHHh----hhhhhhcCCcchHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041810 312 DFALLLERHILASAAAAGGLRVVTETIQICLGH----CSLLEARGLALSPVILRSFRPSVEHALSAYLKRIEKSSAALAA 387 (750)
Q Consensus 312 ~f~~l~~rqv~~~~~aa~~l~~~~ecv~~a~~~----c~~L~~vGLDl~~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~ 387 (750)
.|-.++++|+-.-. .-+.+|++.+... +..+....+.=-|.|...+...+.+.++.......+.|..++.
T Consensus 194 afe~Li~~~i~~l~------~Pa~~cv~~V~~~l~~i~~~~~~~~~~~fp~L~~~i~~~v~~~l~~~~~~a~~~i~~li~ 267 (295)
T PF01031_consen 194 AFESLIRKQIEKLE------EPALQCVEEVHEELQRIVEQVLEKEFERFPNLKEAIKEAVQQLLEECREPAKEMIENLID 267 (295)
T ss_dssp HHHHHHHHHHHTTH------HHHHHHHHHHHHHHHHHHHHHHCHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhhcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37778888873222 1123444444333 3333333444346788888889999999999999999999888
Q ss_pred ccC-cccc
Q 041810 388 ADD-WLLA 394 (750)
Q Consensus 388 ~d~-W~~~ 394 (750)
-|. +.-+
T Consensus 268 ~E~~~i~T 275 (295)
T PF01031_consen 268 MELSYINT 275 (295)
T ss_dssp HHTTS--T
T ss_pred HhcccCCC
Confidence 776 5443
No 27
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=54.93 E-value=38 Score=33.63 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 041810 49 KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEGA 115 (750)
Q Consensus 49 ~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~ 115 (750)
++.++++.|+.+++++...- +.-.+|.+..+.-+.+.+++.|+.++++.++..+..+......+
T Consensus 40 ~~~~~l~~Ei~~l~~E~~~i---S~qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~~~~~~~~~~~~~ 103 (161)
T PF04420_consen 40 KEQRQLRKEILQLKRELNAI---SAQDEFAKWAKLNRKLDKLEEELEKLNKSLSSEKSSFDKSLSKV 103 (161)
T ss_dssp HHHHHHHHHHHHHHHHHTTS----TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666655444331 66679999999999999999999999999999988887765543
No 28
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.60 E-value=5.3e+02 Score=32.01 Aligned_cols=124 Identities=15% Similarity=0.188 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh--hhhhhhhhcCC
Q 041810 50 EIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEGAR--IDSLFAVTEDS 127 (750)
Q Consensus 50 eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~--l~~L~e~veg~ 127 (750)
+-...-.+|....+.-+.++.+..=.||+.||.+-+|+.++.+|..+|++.++....-++....... .+.|....-.+
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~~~ 124 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRTQS 124 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556777777888889999999999999999999999999999999999887776666544321 11221111000
Q ss_pred ccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 041810 128 DDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTV 177 (750)
Q Consensus 128 ~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l 177 (750)
.+ +. ... ...+.---+.|+-..+.-.+.+++|=.|++.++..++..
T Consensus 125 rn--it-~ai-~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~lE~~y 170 (800)
T KOG2176|consen 125 RN--IT-EAI-ELLTLCLPVLELYSKLQEQMSEKQYYPALKTLESLEKVY 170 (800)
T ss_pred hh--HH-HHH-HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 00 00 000 000111246677778888899999999999999987765
No 29
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=49.72 E-value=5.5e+02 Score=31.08 Aligned_cols=76 Identities=13% Similarity=0.009 Sum_probs=58.2
Q ss_pred hHHHHHHHHHHHhc-CCCcHHHHHHHHHhHHHHHHHh-hhcccccc------------ccccchhHHhHHHHHHHHHHHH
Q 041810 220 GVELRSAVLALKKL-GDGPRSHTLLLKSHHQRLQSYV-QSLRSSSS------------LSGGALTATVSQLVFSTIAQAA 285 (750)
Q Consensus 220 ~~elr~aV~lL~rL-G~~~~A~~lFL~~rs~~L~~~l-r~L~~eg~------------~~~~~YI~~LS~~fFs~I~~t~ 285 (750)
.+.+++|+..|..= .......+.|-.+|++.+-... .++...|. -||..||+.+=--+.+.++.=.
T Consensus 190 ~~~l~~al~~L~~rp~lf~~~l~~~~~~R~~~l~~~F~~aLt~g~~~~~~~rPIel~AhDP~RYvGDmLAwvHq~~a~E~ 269 (618)
T PF06419_consen 190 SPLLRRALRYLRERPVLFNYCLDEFAEARSKALLRRFLDALTRGGPGGSPSRPIELHAHDPLRYVGDMLAWVHQAIASER 269 (618)
T ss_pred chHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCchhhhccChHHHHHHHHHHHHHHhhhHH
Confidence 46888998887542 2334579999999999887775 55544433 2788999999999999999988
Q ss_pred HHHHhhcCCC
Q 041810 286 RDSLAVFGEE 295 (750)
Q Consensus 286 ~~f~~~F~d~ 295 (750)
+-...+|...
T Consensus 270 E~l~~Lf~~~ 279 (618)
T PF06419_consen 270 EFLESLFKFD 279 (618)
T ss_pred HHHHHHhccc
Confidence 8888999864
No 30
>KOG4572 consensus Predicted DNA-binding transcription factor, interacts with stathmin [Transcription; General function prediction only; Signal transduction mechanisms]
Probab=49.08 E-value=6.2e+02 Score=31.55 Aligned_cols=197 Identities=15% Similarity=0.176 Sum_probs=108.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCccccccccccccCccchhHHHHh
Q 041810 71 RCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEGARIDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEF 150 (750)
Q Consensus 71 knVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~el 150 (750)
+.=-+||.+|-.+-+-.+.|+--+..-..++.+|+.+.+.+..... . .+. +. .-.-+
T Consensus 349 kldNQemkafKGiedRf~aLd~miaSC~rlvnEqKeLahgflAn~k-e-----aek-----ik------------Dan~L 405 (1424)
T KOG4572|consen 349 KLDNQEMKAFKGIEDRFSALDFMIASCERLVNEQKELAHGFLANIK-E-----AEK-----IK------------DANKL 405 (1424)
T ss_pred hhcchhhHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-h-----ccc-----cc------------ccccC
Confidence 3445799999999999999999999999999999999999876552 0 000 11 11112
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 041810 151 LETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVELRSAVLAL 230 (750)
Q Consensus 151 pdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL 230 (750)
| |+|. + +++.++--..+. ..+..|+.+|++-+++++.-|.-++.---.. .|
T Consensus 406 P---dic~-----e-------Han~lliifeN~-----refldikqkcdqaKQEiakNLhtRlk~ccfq---------ml 456 (1424)
T KOG4572|consen 406 P---DICE-----E-------HANCLLIIFENF-----REFLDIKQKCDQAKQEIAKNLHTRLKGCCFQ---------ML 456 (1424)
T ss_pred C---hHHH-----H-------HHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHHHHHHhhhhhhhee---------eh
Confidence 2 2333 2 222222222221 1467799999999999999988776522111 11
Q ss_pred HhcCCCcHHHHHHHHHhHHHHHHHhhhccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHH
Q 041810 231 KKLGDGPRSHTLLLKSHHQRLQSYVQSLRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGEEPAYSSELVTWAVKET 310 (750)
Q Consensus 231 ~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~ei 310 (750)
-++..+.. -...|......++.++.-+..-.+. |..|--.++.++-.-+.. ..|..--++-..-...|..=-..--
T Consensus 457 ~adqdgek-~~allel~ieale~hmdiieairda-P~lYclaVsEiVRRklfi--ke~eEWaga~skd~aqf~eaEekkR 532 (1424)
T KOG4572|consen 457 DADQDGEK-DIALLELKIEALEIHMDIIEAIRDA-PILYCLAVSEIVRRKLFI--KELEEWAGAHSKDCAQFSEAEEKKR 532 (1424)
T ss_pred hhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHH--HHHHHHHHhhhhhhHhhhhHHHHHH
Confidence 11111111 1223445556666655544333332 467777777666544322 2222222211111122322223335
Q ss_pred HHHHHHHHHHHhc
Q 041810 311 EDFALLLERHILA 323 (750)
Q Consensus 311 e~f~~l~~rqv~~ 323 (750)
+.|...|++|.+.
T Consensus 533 EqfGk~fkKhFLh 545 (1424)
T KOG4572|consen 533 EQFGKKFKKHFLH 545 (1424)
T ss_pred HHHHHHHHHHHHH
Confidence 7888899998764
No 31
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=41.28 E-value=1.7e+02 Score=32.39 Aligned_cols=89 Identities=16% Similarity=0.136 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhccccccc------cccchhHHh
Q 041810 202 RQKLADQLAGTICQP--STRGVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLRSSSSL------SGGALTATV 273 (750)
Q Consensus 202 ~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~eg~~------~~~~YI~~L 273 (750)
++.|...+.+++... .-...++.+...+..-||..+++.+.|-+.-...|....|.+..+... .+..|+..+
T Consensus 5 ~~~L~~~~~~~F~~Av~~~D~~~i~rffkLFpllg~~eeGL~~Y~~yic~~Ia~~ar~~~~~~~~~~~~~~~~~~~a~~l 84 (324)
T smart00762 5 RETLTELFKERFDEAVKAQDVPELTRFFKLFPLIGMEEEGLELYSKYICDIIADKARSLLNELAGASDDTRAAVFYADTL 84 (324)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccccCChHhhHHHHHHHHHHHHHHHHHHHhhccccccccccccchHHHHH
Confidence 344444444444431 234679999999999999999999999888777777766665433221 245687777
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 041810 274 SQLVFSTIAQAARDSLAV 291 (750)
Q Consensus 274 S~~fFs~I~~t~~~f~~~ 291 (750)
+.+ |-.|+.++++...+
T Consensus 85 t~L-fe~ia~ii~~h~~~ 101 (324)
T smart00762 85 THL-FENVATIIEQHQPV 101 (324)
T ss_pred HHH-HHHHHHHHHhccHH
Confidence 766 67777777766543
No 32
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=39.51 E-value=7e+02 Score=29.40 Aligned_cols=373 Identities=14% Similarity=0.141 Sum_probs=125.6
Q ss_pred HHHHHHHhHHHHHHHhhhcc--ccccccccchhHHhHHHHHHHHHHHHHHHHhhcCCCCcchhhhHHHHHHHHHHHHHHH
Q 041810 240 HTLLLKSHHQRLQSYVQSLR--SSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGEEPAYSSELVTWAVKETEDFALLL 317 (750)
Q Consensus 240 ~~lFL~~rs~~L~~~lr~L~--~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~~~S~LV~Wa~~eie~f~~l~ 317 (750)
++.|++.=...++.++.+.. ..+......++..+. .++..|..+...-..+||..-.....++.|--..+..+..-+
T Consensus 79 r~~~~~~l~~sv~~~~~~~~~~~~~~~~l~~~l~~l~-~~~~DL~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~l~~l 157 (566)
T PF06046_consen 79 RQKFFEALRESVEERFEQAEEREENKSWLARHLEALR-WVLEDLQVVKDDVVPCFPPEYDIFNTYVSMYHNALSDHLQEL 157 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHH-HHHHHHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555322 222222235788888 999999999999999999653335666666666666665544
Q ss_pred HHHHhccccccCCcHHHHHHHHHHHHhhhhhhhcCCcchHHHHhhhhHH-HHHHHHHHHHHHHHHHHHHH------hccC
Q 041810 318 ERHILASAAAAGGLRVVTETIQICLGHCSLLEARGLALSPVILRSFRPS-VEHALSAYLKRIEKSSAALA------AADD 390 (750)
Q Consensus 318 ~rqv~~~~~aa~~l~~~~ecv~~a~~~c~~L~~vGLDl~~~L~~lL~p~-ve~al~~~~~~i~e~i~~~~------~~d~ 390 (750)
. ...-.+..+-.+.. -.-.|...|...|+...-.|.++|-+. +++.++.|+.+++..++.-. ..++
T Consensus 158 ~----~~~l~~~~ll~ll~---W~~~Y~~~m~~~~l~~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~ 230 (566)
T PF06046_consen 158 I----SPDLEANDLLSLLS---WVNTYPSIMGHPDLAIKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKD 230 (566)
T ss_dssp -----------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c----cCCCCHHHHhhhee---chhhChHhhcCCcccchhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 22111122222222 234555688888887555556555554 46777788888877765533 3456
Q ss_pred ccccCCCCCCCCCCCCCCcccCCCCccccchhHHHHHHHHHHHHhhhccccccccchh----HHHHHHHHHHHHHHHHHH
Q 041810 391 WLLAYPPAGARPFSSTNSLNTAVGSQPKLSTSAHKFNALVQELLEDIGPLENLKLDGP----ALDGVFQAFNSYVSLLIN 466 (750)
Q Consensus 391 W~~~~~~~~~~~~~g~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~----~~~~l~~lf~~y~~~l~~ 466 (750)
|.-..+|... . ...--|+...-+..|+.+-++=+ +..+.+. +++.+...+..|-..+..
T Consensus 231 w~~~~~Pe~~-----------~--dg~y~t~~~~difqmi~qql~va----~~~l~~~v~~~v~~~~~~~l~~~~~~~~~ 293 (566)
T PF06046_consen 231 WSEEKEPEED-----------E--DGYYHTPLPVDIFQMINQQLDVA----SESLQGKVLQRVLEELANFLKSYQDAWQE 293 (566)
T ss_dssp HHC-S--EE------------T--TS-EE-HHHHHHHHHHHHHHHHH----HHTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCCCcC-----------C--CCCeecCcHHHHHHHHHHHHHHH----HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 7765444410 1 12355667788888888877766 4455444 444455556666665555
Q ss_pred hCCCCCcchhhc-cccccchhccccchHHHHHHHHhHHHHHHhHHHHHHHhhccCcCCcccCCcCCcCCCCCCChhhHHH
Q 041810 467 ALPGSTENEENL-EGFSNKIVSMAETESQQVALLANASLLADELLPRAALKLLPLSSNRMEMTPRRASDRQNRFPEQREW 545 (750)
Q Consensus 467 al~~~~~~~~~~-~~~~~~~v~~a~t~~qq~~ll~Na~~l~d~llp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~ 545 (750)
.+.....+-... ....+ .-..+-.+|++.|+....+ .......++.+.-.. +.......=
T Consensus 294 ~~~~~~~~~~~~~~~~~~-----~~~~eyliA~~N~~~~~~~-~~~~l~~~~~~~~~~-------------~~~~~~~~~ 354 (566)
T PF06046_consen 294 FKEEHFKDRSSVKPKENP-----PGYLEYLIAVANNCLRCRD-YVESLEQKFEEKVSQ-------------KYMERISSD 354 (566)
T ss_dssp HHHHHHHHHHHHHHCC-------S-HHHHHHHHHHHHHHHHH-HHHHHHHHHHTTS-H-------------HHHHHHHHH
T ss_pred HHHHHHHhhhcccccccc-----cchHHHHHHHhccHHHHHH-HHHHHHHhcccccch-------------HHHhhhhhh
Confidence 442211100000 00000 0112234778888888875 444444454322110 000001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCcccccccchhhHhhccCCCCCCCCCCChHHHHHHHHHHHHHHhhhhhhc-chhH
Q 041810 546 KRKLQRLVDRLRDSFCRTHALDIIFTEDGEIRLNAEIYTCMDESMEEPEWFPSPIFQELFIKLTRMASIASDMFV-GRER 624 (750)
Q Consensus 546 ~~~l~~~~~kl~~~fc~~~~~~~i~~~~~~~~l~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~-g~e~ 624 (750)
...+...++.+..+.|+ ++++.|+.+ |.|. + +.--.+.|+-+.+.+.+-..+..-. .|.-. =+..
T Consensus 355 ~~~~~~~~~~l~~~~~~-~L~~~if~D-----l~p~-~----~~Lft~~W~~~~~~~~I~~Ti~dY~---~d~~~~l~~~ 420 (566)
T PF06046_consen 355 LEELMDGFDDLAKECCQ-YLLEEIFND-----LKPH-F----KKLFTKKWYSGEAVDTICATIEDYL---QDFQHYLRPP 420 (566)
T ss_dssp HCTTHHHHHHHHHHHHH-HHHHHHHHC-----THHH-H----CTTTSGGGCTS-HHHHHHHHHHHHH---HHHCCCS-HH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH-----hHHH-H----HHhCcCcCcCcchHHHHHHHHHHHH---HHHHHhcccc
Confidence 23356677777777555 555555542 3222 1 1112367877765555555543322 23222 2333
Q ss_pred HHHHHHHHHHHHHHH-HhcCChhhHHhhhc-CC----ccCCccchhhhhhHHHHHHHHH
Q 041810 625 FATILLMRLTETVIL-WLADDQSFWAEIEE-GP----KPLGPLGLQQFYLDMEFVMLFS 677 (750)
Q Consensus 625 ~~~~ll~rl~e~v~~-~ls~~~~~w~~~e~-~~----~~~~~~glqq~~Ldm~f~~~~a 677 (750)
....|+.++.+.+|. |+. .+-. +. ..-.+.+..++.-|.+=+..+-
T Consensus 421 ~~~~l~~~~~~~~v~~Yl~-------~l~~kk~~~~~~~~~~~~a~~i~~D~~~l~~~F 472 (566)
T PF06046_consen 421 YFQELIEELHDRVVKEYLR-------ALMKKKIKFKNKEERKEAAERIRRDAEQLKSFF 472 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHH-------GGGG---------CCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHhhhhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677777555554 433 2222 21 3346889999999998777765
No 33
>KOG2163 consensus Centromere/kinetochore protein zw10 involved in mitotic chromosome segregation [Cell cycle control, cell division, chromosome partitioning]
Probab=38.50 E-value=8e+02 Score=29.74 Aligned_cols=76 Identities=17% Similarity=0.188 Sum_probs=52.3
Q ss_pred CccccchhHHHHHHHHHHHHhhhccccccccchhHHHHHHHHHHHHHHHHHHhCCCCCcchhhccccccchhccccchHH
Q 041810 415 SQPKLSTSAHKFNALVQELLEDIGPLENLKLDGPALDGVFQAFNSYVSLLINALPGSTENEENLEGFSNKIVSMAETESQ 494 (750)
Q Consensus 415 ~~~~LT~S~~~F~~~v~~f~ed~~~L~~~~L~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~q 494 (750)
..|..|.|+..|+.++.+.+++++-=-.-+-...+-..+..+|.-|+..+ |. ++-++-++-+|
T Consensus 432 prC~vSeSa~~fvnL~~~tL~~at~ss~dq~a~~la~~arni~hly~~vV----P~-------------khrell~siPq 494 (719)
T KOG2163|consen 432 PRCTVSESAINFVNLLRDTLKAATASSDDQAAAKLALTARNIVHLYVIVV----PR-------------KHRELLSSIPQ 494 (719)
T ss_pred cceeecHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHh----hH-------------HHHHHHHhcch
Confidence 56799999999999999999998754434444445555666777676543 21 11222366788
Q ss_pred HHHHHH-hHHHHHH
Q 041810 495 QVALLA-NASLLAD 507 (750)
Q Consensus 495 q~~ll~-Na~~l~d 507 (750)
|-+|.. |+.||..
T Consensus 495 ~AaifhNNCmyi~h 508 (719)
T KOG2163|consen 495 MAAIFHNNCMYISH 508 (719)
T ss_pred HHHHHhcccHHHHH
Confidence 888875 5888886
No 34
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=37.91 E-value=1.3e+02 Score=26.32 Aligned_cols=51 Identities=14% Similarity=0.240 Sum_probs=32.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHH----HHHHHHHHHHHHHhcCC
Q 041810 160 ERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAIS----EQRQKLADQLAGTICQP 216 (750)
Q Consensus 160 er~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~----er~~~L~~~L~~~l~~~ 216 (750)
.++|++|.++|..+=+++..-++ +..-..|+.|+. +...+ ++.|...+..|
T Consensus 19 ~gny~eA~~lY~~ale~~~~ekn-----~~~k~~i~~K~~~~a~~yl~R-AE~Lk~~l~~~ 73 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTSN-----ETMDQALQTKLKQLARQALDR-AEALKESMSKA 73 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcC-----hhhHHHHHHHHHHHHHHHHHH-HHHHHHHhccc
Confidence 68999999999998776655322 234566777775 33333 55555555544
No 35
>PF04444 Dioxygenase_N: Catechol dioxygenase N terminus; InterPro: IPR007535 This domain is the N-terminal region of catechol, chlorocatechol or hydroxyquinol 1,2-dioxygenase proteins. This region is always found adjacent to the dioxygenase domain (IPR000627 from INTERPRO). Dioxygenases catalyse the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms. Cleavage of aromatic rings is one of the most important functions of dioxygenases, which play key roles in the degradation of aromatic compounds. The substrates of ring-cleavage dioxygenases can be classified into two groups according to the mode of scission of the aromatic ring. Intradiol enzymes use a non-haem Fe(III) to cleave the aromatic ring between two hydroxyl groups (ortho-cleavage), whereas extradiol enzymes (IPR000486 from INTERPRO) use a non-haem Fe(II) to cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon (meta-cleavage) []. These two subfamilies differ in sequence, structural fold, iron ligands, and the orientation of second sphere active site amino acid residues. Enzymes that belong to the intradiol family include catechol 1,2-dioxygenase (1,2-CTD) (1.13.11.1 from EC); protocatechuate 3,4-dioxygenase (3,4-PCD) (1.13.11.3 from EC); and chlorocatechol 1,2-dioxygenase (1.13.11.1 from EC) [].; GO: 0005506 iron ion binding, 0018576 catechol 1,2-dioxygenase activity, 0009712 catechol-containing compound metabolic process, 0055114 oxidation-reduction process; PDB: 3O6R_B 1S9A_A 3O6J_A 3O5U_B 3O32_B 3HHY_A 3HHX_A 3HJS_A 3HJQ_A 3HKP_A ....
Probab=36.23 E-value=56 Score=28.37 Aligned_cols=50 Identities=22% Similarity=0.221 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCCcHH---HHHH-HHH
Q 041810 197 AISEQRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDGPRS---HTLL-LKS 246 (750)
Q Consensus 197 ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~~~A---~~lF-L~~ 246 (750)
++.+....|++-|.+-++...++..|-..++.+|.++|+..+. ++.| |.+
T Consensus 3 R~~~i~~~lv~~lh~~i~e~~lT~~E~~~av~~L~~~G~~~E~~Ll~DvlGle~ 56 (74)
T PF04444_consen 3 RLKEIMARLVRHLHDFIREVDLTEDEWWAAVDFLNRVGQRNEFILLSDVLGLEH 56 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHTTHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCchhhhhhhhccch
Confidence 4566667777777777777778889999999999999876553 7777 665
No 36
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]
Probab=35.10 E-value=55 Score=33.95 Aligned_cols=69 Identities=20% Similarity=0.188 Sum_probs=41.3
Q ss_pred CCcccccCCcCchhhhhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHH
Q 041810 10 GDSAELEGNLTLSDRLKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKA-SAEEMRRCVYANYAAFIR 82 (750)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~-t~sdLqknVY~NY~~FI~ 82 (750)
+-+|++...+. +..+=.|+.|.|-||+|.+.++......... -.+++.++-+. +.+++. +|+||.+-|.
T Consensus 119 ~iKGIG~ETaD-sILlYa~~rp~FVvD~Yt~R~l~rlg~i~~k-~ydeik~~fe~~l~~~~~--lyqe~HAlIv 188 (215)
T COG2231 119 SIKGIGKETAD-SILLYALDRPVFVVDKYTRRLLSRLGGIEEK-KYDEIKELFEENLPENLR--LYQEFHALIV 188 (215)
T ss_pred ccCCcchhhHH-HHHHHHhcCcccchhHHHHHHHHHhcccccc-cHHHHHHHHHhcchhHHH--HHHHHHHHHH
Confidence 34566555533 5668889999999999999999865443222 12223322221 223333 6777776664
No 37
>COG2959 HemX Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=33.39 E-value=7.7e+02 Score=28.04 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcCCc
Q 041810 49 KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEGARIDSLFAVTEDSD 128 (750)
Q Consensus 49 ~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~~L~e~veg~~ 128 (750)
.++...+.++. .....+++|+..-+|-..|-....|+..++.+.....+.+++....+..++.+
T Consensus 63 ~~l~a~~~q~~--~~~~aqe~q~l~~ql~~~~~~~q~el~~l~~~~~~~~~ql~e~Q~~v~~is~~-------------- 126 (391)
T COG2959 63 QELQALQQQLK--ALQLAQENQKLLAQLESLIAQQQAELDRLERQLETLQKQLSELQKKVATISGS-------------- 126 (391)
T ss_pred HHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccC--------------
Confidence 44555555555 33567788998999999999999999999999999999888876666665421
Q ss_pred cccccccccccCccchhHHHHhHHHH-----HHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHH
Q 041810 129 DDDISSLKNEGLSNMENWSVEFLETL-----EVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQ 203 (750)
Q Consensus 129 ~e~l~~~~~~~~~~~l~wL~elpdeL-----Dv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~ 203 (750)
+.-+|+..--|-| ..+...++.+.|+.+++.+...|..+.+. .+..++.+|..=.+
T Consensus 127 -------------~~~dWllaEad~Ll~lA~rkL~l~~DV~TAv~lLk~aD~~La~~NdP------~l~~~R~Aia~Dia 187 (391)
T COG2959 127 -------------DRKDWLLAEADFLLKLAGRKLVLDQDVTTAVALLKSADARLAAMNDP------SLIAVRRAIANDIA 187 (391)
T ss_pred -------------ChhhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHhccCc------hHHHHHHHHHHHHH
Confidence 1234554433332 35566899999999999999999876542 34455544444333
Q ss_pred H
Q 041810 204 K 204 (750)
Q Consensus 204 ~ 204 (750)
.
T Consensus 188 ~ 188 (391)
T COG2959 188 A 188 (391)
T ss_pred H
Confidence 3
No 38
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.11 E-value=5.8e+02 Score=26.52 Aligned_cols=164 Identities=15% Similarity=0.081 Sum_probs=83.2
Q ss_pred HHHHhhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhh
Q 041810 38 YVASKSQHMNE--KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQG-LAEG 114 (750)
Q Consensus 38 Yv~~ll~~~~e--~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~-L~~~ 114 (750)
++++.|++... +++.++-.++..+...+...+++- .|=.|.+...++...+.+|+..|.+.-....+ ..+
T Consensus 7 si~~~L~e~d~~REE~l~lsRei~r~s~~aI~~~H~~------~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~- 79 (204)
T COG2178 7 SIREVLQEKDKAREEALKLSREIVRLSGEAIFLLHRG------DFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVT- 79 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhc-
Confidence 34445543322 455555555555555555554443 36666666666666666666666666555551 111
Q ss_pred hhhhhhhhhhcCCccc------cccccccc--cCccchhHHHHhHHHHH----HHHhccCHHHHHHHHHHHHHHHHhhhh
Q 041810 115 ARIDSLFAVTEDSDDD------DISSLKNE--GLSNMENWSVEFLETLE----VLLAERRVDEALAALEEGQNTVREAKH 182 (750)
Q Consensus 115 ~~l~~L~e~veg~~~e------~l~~~~~~--~~~~~l~wL~elpdeLD----v~IAer~feeAV~ll~k~~~~l~~~~~ 182 (750)
..+++=||-..-. .+...++. .+..-+.=+.|+..+|- ..+.+++|++|-+.+.--+++...+..
T Consensus 80 ---~a~QEyvEA~~l~~~l~~~~~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~lY~~Lm~ 156 (204)
T COG2178 80 ---TALQEYVEATLLYSILKDGRLPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKLYEELME 156 (204)
T ss_pred ---chHHHHHHHHHHHHHHhcCCCCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 1222222210000 00000000 00011334455555555 456799999998888777777766544
Q ss_pred cCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 183 RCTLSRSAIFSLQSAISEQRQKLADQLAGT 212 (750)
Q Consensus 183 ~~~~~~~~~~~i~~ki~er~~~L~~~L~~~ 212 (750)
. +-.......++.|.+.-+..+-....+.
T Consensus 157 f-dyP~~l~~~LR~K~Dvar~~lekt~~dl 185 (204)
T COG2178 157 F-DYPKALVPGLRQKQDVARSLLEKTKSDL 185 (204)
T ss_pred c-CCchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3 1112234478888887776666554433
No 39
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=32.79 E-value=5.3e+02 Score=28.47 Aligned_cols=85 Identities=15% Similarity=0.150 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHhcCC--CCChHHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhccccc------cccccchhHHh
Q 041810 202 RQKLADQLAGTICQP--STRGVELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLRSSS------SLSGGALTATV 273 (750)
Q Consensus 202 ~~~L~~~L~~~l~~~--s~~~~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~eg------~~~~~~YI~~L 273 (750)
++.|.+.+.+++... .-...++.+...+..-||..+++.+.|-+.=...|....+..-... ...++.|...+
T Consensus 5 ~~~L~~~f~~~F~~A~~~~D~~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~~~~~~~~~~~l 84 (331)
T PF08318_consen 5 RESLCEIFLKKFDEAAQANDVAQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSDSRSPVFYADAL 84 (331)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccHHHHH
Confidence 344444444444331 2346799999999999999999999988776666666555432111 12234555555
Q ss_pred HHHHHHHHHHHHHH
Q 041810 274 SQLVFSTIAQAARD 287 (750)
Q Consensus 274 S~~fFs~I~~t~~~ 287 (750)
..+ |-.|+.++++
T Consensus 85 t~L-Fe~ia~ii~~ 97 (331)
T PF08318_consen 85 TKL-FEHIATIIEQ 97 (331)
T ss_pred HHH-HHHHHHHHHH
Confidence 433 4444444444
No 40
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=32.71 E-value=5.5e+02 Score=27.41 Aligned_cols=187 Identities=13% Similarity=0.072 Sum_probs=94.6
Q ss_pred HHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhcCCC
Q 041810 157 LLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRGVELRSAVLALKKLGDG 236 (750)
Q Consensus 157 ~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~~elr~aV~lL~rLG~~ 236 (750)
...+++++-|..++.|++..+... +|.....+-..+-..-..+.++ =.+......=++++..+|-+.++.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~------~~~~~~~La~~~yn~G~~l~~~----~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSL------DPDMAEELARVCYNIGKSLLSK----KDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcC------CcHHHHHHHHHHHHHHHHHHHc----CCChHHHHHHHHHHHHHHHhhhhc
Confidence 357999999999999999887511 1122333333333333222221 001111122467777777554444
Q ss_pred cHHHHHHHHHhHHHHHHHhhhccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCCCCcch-hhhHHHHH-HHHHHHH
Q 041810 237 PRSHTLLLKSHHQRLQSYVQSLRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGEEPAYS-SELVTWAV-KETEDFA 314 (750)
Q Consensus 237 ~~A~~lFL~~rs~~L~~~lr~L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d~~~~~-S~LV~Wa~-~eie~f~ 314 (750)
.....-+..-|-..++...+..-..++ ..|..+ ...+++.-..-|++.|... =.+-.|.+ .-.+.+.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~---~~~~~k--------a~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDT---YESVEK--------ALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCC---hHHHHH--------HHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 444333333344444444444333332 234433 2222333366688765543 34444544 2245556
Q ss_pred HHHHHHHhccccccCCcHHHHHHHHHHHHhhhhhhhcCCcchHHHHhhhhHH
Q 041810 315 LLLERHILASAAAAGGLRVVTETIQICLGHCSLLEARGLALSPVILRSFRPS 366 (750)
Q Consensus 315 ~l~~rqv~~~~~aa~~l~~~~ecv~~a~~~c~~L~~vGLDl~~~L~~lL~p~ 366 (750)
+.+.+-|.+......++..+..|++....++..+ .+-.+.+.|...+.|.
T Consensus 142 ~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~~~~--a~~~ld~~l~~r~~~~ 191 (278)
T PF08631_consen 142 EILMRMIRSVDHSESNFDSILHHIKQLAEKSPEL--AAFCLDYLLLNRFKSS 191 (278)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHhhCcHH--HHHHHHHHHHHHhCCC
Confidence 6666666544322368888888888888877643 3333334444444443
No 41
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=32.11 E-value=9e+02 Score=28.47 Aligned_cols=74 Identities=16% Similarity=0.141 Sum_probs=56.3
Q ss_pred hhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 041810 35 PDAYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQGLAEG 114 (750)
Q Consensus 35 pe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~~~ 114 (750)
.+.|+++ .+++.++..++.... ..=+.|......-.+.-=.+|.||..|...-.+|...|...+.+...|..-
T Consensus 6 i~dy~~e------~~~~~~Lh~~i~~cd-~~L~~le~~L~~Fq~~L~~iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~ 78 (508)
T PF04129_consen 6 IQDYLKE------SENFADLHNQIQECD-SILESLEEMLSNFQNDLGSISSEIRSLQERSSSLNVKLKNRKAVEEKLSPF 78 (508)
T ss_pred HHHHHHH------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3456665 356777777776544 445567777777777777899999999999999999999999988888775
Q ss_pred h
Q 041810 115 A 115 (750)
Q Consensus 115 ~ 115 (750)
+
T Consensus 79 i 79 (508)
T PF04129_consen 79 I 79 (508)
T ss_pred H
Confidence 5
No 42
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=30.45 E-value=9.3e+02 Score=29.83 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=57.3
Q ss_pred cCCCCChhHH-HHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 29 KSSQFDPDAY-VASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQS 105 (750)
Q Consensus 29 ~~~~Fdpe~Y-v~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~ 105 (750)
.++.|.|.-- |.+++.+.+..+|+.+++.|.... .=...|..++-+.=+++=.+..+.+++...+..|...|...+
T Consensus 244 ~~~~~~p~~~lv~DLfSEl~~~EiqKL~qQL~qve-~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~ 320 (717)
T PF09730_consen 244 KSESFSPAPSLVSDLFSELNLSEIQKLKQQLLQVE-REKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALR 320 (717)
T ss_pred CCCCCCCCCcccchhhhhcchHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567877554 889999999999999999999885 556677777777777777777777777766666666555433
No 43
>PRK15380 pathogenicity island 1 protein SopD2; Provisional
Probab=29.74 E-value=31 Score=36.62 Aligned_cols=61 Identities=26% Similarity=0.444 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH---HHHHHHhhcC-cccccccchhhHhhccCCCCCCCCCCChHHHHHHHHHHHHHH-hhhhhhc
Q 041810 551 RLVDRLRDSFC---RTHALDIIFT-EDGEIRLNAEIYTCMDESMEEPEWFPSPIFQELFIKLTRMAS-IASDMFV 620 (750)
Q Consensus 551 ~~~~kl~~~fc---~~~~~~~i~~-~~~~~~l~~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~-~~~~~~~ 620 (750)
+.-||+||+|| .++||+.+|+ -+|-.|=.+. -|+-++ +.| +.+ .-|.+|+++|. -..|.|+
T Consensus 35 G~WDR~KD~FrsekK~eALEvLy~lIhg~~R~~~~---Em~Vdv---~gm-~KI--yAF~qL~qlA~Pa~QD~F~ 100 (319)
T PRK15380 35 GVWDRFKDCFRTHKKQEVLEVLYTLIHGCERENQA---ELNVDI---TGM-EKI--HAFTQLKQYANPSQQDRFV 100 (319)
T ss_pred chHHHHHHHHhcccHHHHHHHHHHHHcccccCCcc---cccccc---ccH-HHH--HHHHHHHHhcCccccceEE
Confidence 44599999999 7899999986 2332222110 012111 112 111 45888888876 3355554
No 44
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=26.96 E-value=3e+02 Score=24.92 Aligned_cols=82 Identities=22% Similarity=0.300 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHhcCChhhHHhhhcCCccCCccchhhhhhHHHHHHHHHhcC
Q 041810 601 FQELFIKLTRMASIASDMFVGRERFATILLMRLTETVILWLADDQSFWAEIEEGPKPLGPLGLQQFYLDMEFVMLFSSQG 680 (750)
Q Consensus 601 fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v~~~ls~~~~~w~~~e~~~~~~~~~glqq~~Ldm~f~~~~a~~g 680 (750)
|+.||.+|.++-.-.-+ .+-+ -++.|..|..+.+-.|--.+.+++ .||-+++++-.-..... +
T Consensus 37 ~~~l~~~l~~~~~~g~~--p~s~-evq~l~~~~~~~~~~~~~~~~~~~------------~~l~~~y~~~~~~~~~~--~ 99 (118)
T PF07739_consen 37 WDELFAELAALMEEGVD--PDSP-EVQELAERWMELINQFTGGDPELL------------RGLAQMYVEDPRFAAMY--D 99 (118)
T ss_dssp HHHHHHHHHHHHHHT----TT-H-HHHHHHHHHHHHHHHSS---HHHH------------HHHHHHTTSTHHHHHHH--G
T ss_pred HHHHHHHHHHHHHcCCC--cCCH-HHHHHHHHHHHHHHHHhCCCHHHH------------HHHHHHHHcCHHHHhhc--c
Confidence 77788888777553222 2222 378888898888865544455555 56777776554444433 3
Q ss_pred CCcChhHHHHHHHHHHHHHHHHH
Q 041810 681 RYLSRNLQQVIKNIIARAIEVVA 703 (750)
Q Consensus 681 ~~~s~~~~~~~~~~~~~a~~~~~ 703 (750)
...+.. +..-|.+|+++|+
T Consensus 100 ~~~~~~----~~~fi~~Ai~~y~ 118 (118)
T PF07739_consen 100 KKFGPG----LAEFIEKAIEAYA 118 (118)
T ss_dssp -GGSTT----HHHHHHHHHHHHH
T ss_pred ccCCHH----HHHHHHHHHHHHC
Confidence 122223 3345888888875
No 45
>PRK11020 hypothetical protein; Provisional
Probab=26.15 E-value=3.7e+02 Score=25.39 Aligned_cols=60 Identities=25% Similarity=0.359 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 041810 49 KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRN----LLATQSALVQGL 111 (750)
Q Consensus 49 ~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~----lLs~q~~lI~~L 111 (750)
.||+++-+.|-.+.+..+.-.++.=-+-|.+| .+||.+|+.++..|++ .|+..+..+.+|
T Consensus 5 ~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf---~~E~~~l~k~I~~lk~~~~~~lske~~~l~~l 68 (118)
T PRK11020 5 NEIKRLSDRLDAIRHKLAAASLRGDAEKYAQF---EKEKATLEAEIARLKEVQSQKLSKEAQKLMKL 68 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57888888888888888877777767777777 5899999999999984 455555555554
No 46
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=25.23 E-value=3.5e+02 Score=22.79 Aligned_cols=44 Identities=11% Similarity=0.078 Sum_probs=30.1
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHH
Q 041810 160 ERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQK 204 (750)
Q Consensus 160 er~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~ 204 (750)
.+++++|+.++.+|-..+...-..+. ++.....+..++.+-..+
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~~~~~~~-~~~~~~~~~~k~~eyl~r 64 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLEGIKVES-DSKRREAVKAKAAEYLDR 64 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHH
Confidence 68999999999999888876544331 233345666666665555
No 47
>COG2882 FliJ Flagellar biosynthesis chaperone [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=25.22 E-value=4.8e+02 Score=25.79 Aligned_cols=55 Identities=24% Similarity=0.384 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 50 EIRHLCSYLVELKKASAEEMRRCV----YANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQG 110 (750)
Q Consensus 50 eL~~~~~~L~~lk~~t~sdLqknV----Y~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~ 110 (750)
.|..+..+=.+.-....+.+..-| +.||+.||.. |+..+.+-++.++.++..+..
T Consensus 38 qL~~l~~y~~ey~q~~~~k~~~G~s~~q~~nyq~fI~~------Le~~I~q~~~~~~~~~~~ve~ 96 (148)
T COG2882 38 QLKMLSGYRNEYEQNLNEKLKSGVSAAQWQNYQQFISQ------LEVAIDQQQSQLSKLRKQVEQ 96 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444333 4699999875 666666666666655555544
No 48
>PF11047 SopD: Salmonella outer protein D; InterPro: IPR022747 The proteins in this entry are also known as secreted effector proteins. Effector proteins function to alter host cell physiology and promote bacterial survival in host tissues. They contribute to the formation of Salmonella-induced filaments (Sifs) in infected epithelial cells and to replication in macrophages []. SopD is a type III virulence effector protein whose structure consists of 38% alpha-helix and 26% beta-strand [].; GO: 0009405 pathogenesis, 0033644 host cell membrane
Probab=25.08 E-value=99 Score=33.49 Aligned_cols=21 Identities=29% Similarity=0.665 Sum_probs=17.9
Q ss_pred HHHHHHHHHHH---HHHHHHhhcC
Q 041810 551 RLVDRLRDSFC---RTHALDIIFT 571 (750)
Q Consensus 551 ~~~~kl~~~fc---~~~~~~~i~~ 571 (750)
+.-||++|+|| .++||+.+|+
T Consensus 35 GlWDKfKD~FRseKK~EALe~LY~ 58 (319)
T PF11047_consen 35 GLWDKFKDWFRSEKKQEALEVLYD 58 (319)
T ss_pred hhHHHHHHHHhcccHHHHHHHHHH
Confidence 44599999999 7889999986
No 49
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=25.07 E-value=3.7e+02 Score=22.90 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=32.9
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041810 160 ERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTI 213 (750)
Q Consensus 160 er~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l 213 (750)
.++|++|+.+|..+=..+..+-.... ++.....++.++.+-..+ ++.|...+
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~~~k~e~-~~~~k~~~~~k~~eyl~R-aE~LK~~l 70 (75)
T cd02678 19 AGNYEEALRLYQHALEYFMHALKYEK-NPKSKESIRAKCTEYLDR-AEKLKEYL 70 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 78999999999998887766533221 233345666666665555 44444443
No 50
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=24.91 E-value=9.7e+02 Score=26.51 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=81.4
Q ss_pred CChhHHHHHhhhcCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 33 FDPDAYVASKSQHMNE--KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSALVQG 110 (750)
Q Consensus 33 Fdpe~Yv~~ll~~~~e--~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~lI~~ 110 (750)
..--..++..++..-+ ..|+...+.|........+.=|++|-.=..+|-.|+..|..|..|+..=..-...|..-|..
T Consensus 159 ~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~ 238 (306)
T PF04849_consen 159 CIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITS 238 (306)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333456666654322 45555555555555556667788888889999999999999999998888777788788887
Q ss_pred HhhhhhhhhhhhhhcCCccccccccccccCccchhHHHHhHHHHHHHHh--ccCHHHHHHHHHHHHHHHHhhh
Q 041810 111 LAEGARIDSLFAVTEDSDDDDISSLKNEGLSNMENWSVEFLETLEVLLA--ERRVDEALAALEEGQNTVREAK 181 (750)
Q Consensus 111 L~~~~~l~~L~e~veg~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IA--er~feeAV~ll~k~~~~l~~~~ 181 (750)
|...+ ..+..+......| ..++...+.--.+.=..|-.-+. +-+|.+...++..++.-++.+.
T Consensus 239 Llsqi--vdlQ~r~k~~~~E------nEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR 303 (306)
T PF04849_consen 239 LLSQI--VDLQQRCKQLAAE------NEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLR 303 (306)
T ss_pred HHHHH--HHHHHHHHHHhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 77655 2343332221111 00010001111111112222221 4567777777777777766554
No 51
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=24.15 E-value=86 Score=22.58 Aligned_cols=20 Identities=10% Similarity=0.194 Sum_probs=16.1
Q ss_pred HHHHhccCHHHHHHHHHHHH
Q 041810 155 EVLLAERRVDEALAALEEGQ 174 (750)
Q Consensus 155 Dv~IAer~feeAV~ll~k~~ 174 (750)
+++...++|++|+++++++=
T Consensus 7 ~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 7 RIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999998854
No 52
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=23.44 E-value=3.2e+02 Score=22.62 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=19.4
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhh
Q 041810 160 ERRVDEALAALEEGQNTVREAKH 182 (750)
Q Consensus 160 er~feeAV~ll~k~~~~l~~~~~ 182 (750)
.++|++|++++.++-..+...-.
T Consensus 18 ~g~~~~A~~~Y~~ai~~l~~~~~ 40 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYLMQALK 40 (69)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhc
Confidence 78999999999999888866543
No 53
>PF01865 PhoU_div: Protein of unknown function DUF47; InterPro: IPR018445 This family includes prokaryotic proteins of unknown function, as well as a protein annotated as the pit accessory protein from Rhizobium meliloti (Sinorhizobium meliloti) (O30498 from SWISSPROT). However, the function of this protein is also unknown (Pit stands for Phosphate transport) [].; PDB: 2OLT_C 2IIU_C 3L39_A.
Probab=23.21 E-value=7.9e+02 Score=24.86 Aligned_cols=58 Identities=17% Similarity=0.131 Sum_probs=45.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 45 HMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLA 102 (750)
Q Consensus 45 ~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs 102 (750)
...++.+.++-.++.+....+.+-|+..+-.||..+-...++|..+|++=-++++-+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~i~~lE~~aD~i~~~i~ 64 (214)
T PF01865_consen 7 KSPEKKFFDHFEEVAEASVLLAELLEAYLEGDYEDVEELLEEIKELEHEADEIKREIR 64 (214)
T ss_dssp --TTHHHHHHHHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445778888888888888888888887767999999999999999999999885543
No 54
>PF14182 YgaB: YgaB-like protein
Probab=22.79 E-value=5.4e+02 Score=22.77 Aligned_cols=66 Identities=18% Similarity=0.238 Sum_probs=46.0
Q ss_pred HHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 37 AYVASKSQHMNEKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNLLATQSAL 107 (750)
Q Consensus 37 ~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~lLs~q~~l 107 (750)
.-|...++.| +++..+.++|.+.. ....+|+..=-+ ..-..+-.||+.|+.++..+++....|..-
T Consensus 4 ~LV~eQm~tM--D~LL~LQsElERCq-eIE~eL~~l~~e--a~l~~i~~EI~~mkk~Lk~Iq~~Fe~QTee 69 (79)
T PF14182_consen 4 KLVSEQMKTM--DKLLFLQSELERCQ-EIEKELKELERE--AELHSIQEEISQMKKELKEIQRVFEKQTEE 69 (79)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHH--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666554 56777777777666 344444444333 455667789999999999999999988763
No 55
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=22.22 E-value=4.3e+02 Score=22.76 Aligned_cols=52 Identities=15% Similarity=0.087 Sum_probs=34.3
Q ss_pred ccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041810 160 ERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLADQLAGTI 213 (750)
Q Consensus 160 er~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~L~~~l 213 (750)
.++|++|+.+|..+=..+..+-... .++.....|+.++.+-..+ ++.|...+
T Consensus 19 ~g~y~eA~~lY~~ale~~~~~~k~e-~~~~~k~~lr~k~~eyl~R-AE~LK~~l 70 (75)
T cd02684 19 RGDAAAALSLYCSALQYFVPALHYE-TDAQRKEALRQKVLQYVSR-AEELKALI 70 (75)
T ss_pred hccHHHHHHHHHHHHHHHHHHHhhC-CCHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 6899999999999887776643322 2333456677777766666 55555444
No 56
>PF13779 DUF4175: Domain of unknown function (DUF4175)
Probab=20.88 E-value=1.5e+03 Score=28.49 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=37.1
Q ss_pred chhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhc
Q 041810 143 MENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHR 183 (750)
Q Consensus 143 ~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~ 183 (750)
..+-|.++.+.+.-+..+++.++|-+++...+.++..+...
T Consensus 536 ~~~dL~~mmd~ie~la~~G~~~~A~q~L~qlq~mmenmq~~ 576 (820)
T PF13779_consen 536 SQQDLQRMMDRIEELARSGRMDEARQLLEQLQQMMENMQNA 576 (820)
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc
Confidence 36789999999999999999999999999999999988653
Done!