Query 041810
Match_columns 750
No_of_seqs 163 out of 232
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 18:41:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041810.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041810hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2d2s_A Exocyst complex compone 100.0 6.4E-45 2.2E-49 376.0 22.7 219 142-369 13-233 (235)
2 2b1e_A Exocyst complex compone 82.8 71 0.0024 36.4 32.2 193 221-440 121-333 (564)
3 2pft_A Exocytosis protein; hel 82.3 74 0.0025 36.2 29.1 39 221-259 115-153 (571)
4 2crb_A Nuclear receptor bindin 61.0 31 0.0011 30.1 7.7 45 154-199 22-66 (97)
5 3swh_A MUNC13-1, protein UNC-1 50.7 2.5E+02 0.0087 29.8 21.8 129 357-517 5-139 (341)
6 3vkg_A Dynein heavy chain, cyt 45.6 6.2E+02 0.021 35.1 20.1 32 81-112 1930-1961(3245)
7 2a2f_X Exocyst complex compone 41.9 3.3E+02 0.011 28.6 25.7 268 357-680 7-292 (325)
8 2fzt_A Hypothetical protein TM 41.4 1.5E+02 0.0053 24.6 8.6 56 147-208 4-59 (79)
9 1elw_A TPR1-domain of HOP; HOP 28.3 1.9E+02 0.0065 22.8 7.7 86 152-246 9-98 (118)
10 1g6u_A Domain swapped dimer; d 26.9 89 0.003 22.8 4.3 40 21-66 5-44 (48)
11 3t98_B Nucleoporin NUP58/NUP45 25.6 2.9E+02 0.01 23.8 8.3 66 34-100 5-80 (93)
12 2v71_A Nuclear distribution pr 24.6 5E+02 0.017 25.3 13.9 119 48-177 9-128 (189)
13 3haj_A Human pacsin2 F-BAR; pa 21.8 8.1E+02 0.028 26.8 15.3 153 49-212 84-251 (486)
14 2kck_A TPR repeat; tetratricop 20.3 3.1E+02 0.011 21.3 7.4 22 155-176 14-35 (112)
15 2hr2_A Hypothetical protein; a 20.2 1.7E+02 0.0059 27.5 6.3 59 144-206 99-157 (159)
No 1
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=100.00 E-value=6.4e-45 Score=376.00 Aligned_cols=219 Identities=20% Similarity=0.267 Sum_probs=197.9
Q ss_pred cchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCC-CChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCh
Q 041810 142 NMENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCT-LSRSAIFSLQSAISEQRQKLADQLAGTICQPSTRG 220 (750)
Q Consensus 142 ~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~-~~~~~~~~i~~ki~er~~~L~~~L~~~l~~~s~~~ 220 (750)
+.++|+.++||+|||+||+|+||+||++++++++.+..+++..+ .+.+....|+.|+++|++.|+++|.+++.+ +.++
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~~~ 91 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SNEI 91 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSH
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCH
Confidence 67899999999999999999999999999999999988765321 234567899999999999999999999976 6778
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhccccccccccchhHHhHHHHHHHHHHHHHHHHhhcCC-CCcch
Q 041810 221 VELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLRSSSSLSGGALTATVSQLVFSTIAQAARDSLAVFGE-EPAYS 299 (750)
Q Consensus 221 ~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~eg~~~~~~YI~~LS~~fFs~I~~t~~~f~~~F~d-~~~~~ 299 (750)
.+++++|++|+|||++++||++||++|+.+|++++|++.++|+ +..||.++|.+||+.|++|+++|+.+|++ +|.|+
T Consensus 92 ~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~gd--~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~~~~~~ 169 (235)
T 2d2s_A 92 VHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSVDN--PTNYLTQLAVIRFQTIKKTVEDFQDIFKELGAKIS 169 (235)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--CCS--HHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHH
T ss_pred HHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccc
Confidence 8999999999999999999999999999999999999988885 58999999999999999999999999999 77899
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhccccccCCcHHHHHHHHHHHHhhhhhhhcCCcchHHHHhhhhHHHHH
Q 041810 300 SELVTWAVKETEDFALLLERHILASAAAAGGLRVVTETIQICLGHCSLLEARGLALSPVILRSFRPSVEH 369 (750)
Q Consensus 300 S~LV~Wa~~eie~f~~l~~rqv~~~~~aa~~l~~~~ecv~~a~~~c~~L~~vGLDl~~~L~~lL~p~ve~ 369 (750)
|+||.||++|++.|+.+|+||+++ . +++.+ +||+++++||++|+++||||+|+|+++|+|++++
T Consensus 170 S~lV~Wa~~eve~f~~l~~rqv~~-~---~~l~~--ecv~i~~~~~~~L~~vGLd~~~~L~~ll~~~~~~ 233 (235)
T 2d2s_A 170 SILVDWCSDEVDNHFKLIDKQLLN-D---EMLSP--GSIKSSRKQIDGLKAVGLDFVYKLDEFIKKNSDK 233 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-------CCH--HHHHHHHHHHHGGGGGTCCCHHHHHHHHHTTGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHccC-C---ccHHH--HHHHHHHHHHHHHHHcCCChHHHHHHHHhhhHhh
Confidence 999999999999999999999987 3 57754 9999999999999999999999999999999886
No 2
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=82.82 E-value=71 Score=36.37 Aligned_cols=193 Identities=9% Similarity=0.012 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhcccc--------------ccccccchhHHhHHHHHHHHHHHHH
Q 041810 221 VELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLRSS--------------SSLSGGALTATVSQLVFSTIAQAAR 286 (750)
Q Consensus 221 ~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~~e--------------g~~~~~~YI~~LS~~fFs~I~~t~~ 286 (750)
.+++....++++.|........|-+.|+..|...++.+... |.-....|+..+ ..+|..=...+
T Consensus 121 ~~L~~Ia~~m~~~g~~~~~~~iY~~~R~~~l~~sL~~L~~~~k~~~~~~~~~~e~~~~~i~~~~~a~-~~l~~~E~~L~- 198 (564)
T 2b1e_A 121 GALSWILDYFHGNSEGSIIQDILVGERSKLILKCMAFLEPFAKEISTAKNAPYEKGSSGMNSYTEAL-LGFIANEKSLV- 198 (564)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTTSTTCC------------CCSTHHHHHHHH-HHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhhhccccccccCCchhhhccHHHHHHHHH-HHHHHHHHHHH-
Confidence 47889999999999999999999999999999998866321 111225677666 33343333333
Q ss_pred HHHhhcCCCCc-chhhhHHHHHHHHHHHHHHHHHHHh-ccccc-cCCcHH--HHHHHHHHHHhhhhhhhcCCcchHHHHh
Q 041810 287 DSLAVFGEEPA-YSSELVTWAVKETEDFALLLERHIL-ASAAA-AGGLRV--VTETIQICLGHCSLLEARGLALSPVILR 361 (750)
Q Consensus 287 ~f~~~F~d~~~-~~S~LV~Wa~~eie~f~~l~~rqv~-~~~~a-a~~l~~--~~ecv~~a~~~c~~L~~vGLDl~~~L~~ 361 (750)
..+|+..+. ....|..-|..-+..|..+++--.. ....- ...+.+ +.+|+.-. ...|..........+..
T Consensus 199 --~~vf~~~~~~~~~~f~~i~~~~l~~~~~~l~~~~~~~k~~~~~~~f~~l~~~~~l~~~---~~~~~~~~~~~~~~~~~ 273 (564)
T 2b1e_A 199 --DDLYSQYTESKPHVLSQILSPLISAYAKLFGANLKIVRSNLENFGFFSFELVESINDV---KKSLRGKELQNYNLLQD 273 (564)
T ss_dssp --HHHSCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCTHHHHHHHHHHHH---HHHTTTCCCTTHHHHHH
T ss_pred --HHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcchhHHHHHHHHHHH---HHHHcccccchHHHHHH
Confidence 468887433 3566777777777767666662210 01000 012221 23444222 24444333333334444
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhccCcc-ccCCCCCCCCCCCCCCcccCCCCccccchhHHHHHHHHHHHHhhhccc
Q 041810 362 SFRPSVEHALSAYLKRIEKSSAALAAADDWL-LAYPPAGARPFSSTNSLNTAVGSQPKLSTSAHKFNALVQELLEDIGPL 440 (750)
Q Consensus 362 lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~-~~~~~~~~~~~~g~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed~~~L 440 (750)
++++ +.++....+..+.+.|+... .. ...|+.| .-..||..++.|.+.+-++..-+..+
T Consensus 274 ~l~~-L~~~~~~~~~ef~~~i~~~~----~~~~~~p~dG---------------~Vh~lT~~vmnyl~~l~~y~~~l~~~ 333 (564)
T 2b1e_A 274 CTQE-VRQVTQSLFRDAIDRIIKKA----NSISTIPSNN---------------GVTEATVDTMSRLRKFSEYKNGCLGA 333 (564)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHHHHH----HHSCSCCTTC---------------CCCHHHHHHHHHHHHHGGGHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHHHhcc----CCCCCCCCCC---------------cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3332 23333333444444443321 11 1112222 34689999999999988887554443
No 3
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=82.32 E-value=74 Score=36.21 Aligned_cols=39 Identities=10% Similarity=0.146 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHhHHHHHHHhhhcc
Q 041810 221 VELRSAVLALKKLGDGPRSHTLLLKSHHQRLQSYVQSLR 259 (750)
Q Consensus 221 ~elr~aV~lL~rLG~~~~A~~lFL~~rs~~L~~~lr~L~ 259 (750)
..|+..+.+|+.-|...+.++.|-..|+..|.+.+..|.
T Consensus 115 ~~L~~Ia~~m~~~g~~~~~~~~Y~~~R~~~l~~sL~~L~ 153 (571)
T 2pft_A 115 RDVVRISRWLVEYGRNQDFMNVYYQIRSSQLDRSIKGLK 153 (571)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 379999999999999999999999999999999998884
No 4
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=60.98 E-value=31 Score=30.06 Aligned_cols=45 Identities=24% Similarity=0.242 Sum_probs=31.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHH
Q 041810 154 LEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAIS 199 (750)
Q Consensus 154 LDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~ 199 (750)
=+-++..++||+|+++..++-.+|.+.-+.. .++.+..+|+.+-+
T Consensus 22 Ae~ll~~gkydeAIech~kAa~yL~eAmklt-qs~qa~~SLqLQrd 66 (97)
T 2crb_A 22 ADRLLAAGKYEEAISCHRKATTYLSEAMKLT-ESEQAHLSLELQRD 66 (97)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHHHH
Confidence 4678999999999999999999997765443 23334445544333
No 5
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=50.68 E-value=2.5e+02 Score=29.77 Aligned_cols=129 Identities=15% Similarity=0.051 Sum_probs=90.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCCCCCCCCCCCCcccCCCCccccchhHHHHHHHHHHHHhh
Q 041810 357 PVILRSFRPSVEHALSAYLKRIEKSSAALAAADDWLLAYPPAGARPFSSTNSLNTAVGSQPKLSTSAHKFNALVQELLED 436 (750)
Q Consensus 357 ~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~~~~~~~~~~~g~~~~~~~~~~~~~LT~S~~~F~~~v~~f~ed 436 (750)
+-....|.|.|.+=++.+.+++.+-|...+..|+|.+..+.+ ...+=|+|++-..++++++++-
T Consensus 5 ~~~~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~~~~~~~----------------~~~~hSsSvvDif~~~~Q~~~~ 68 (341)
T 3swh_A 5 PEYPAWFEPFVIQWLDENEEVSRDFLHGALERDKKDGFQQTS----------------EHALFSCSVVDVFSQLNQSFEI 68 (341)
T ss_dssp ----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSS----------------SSCCSCTHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc----------------cCccccchHHHHHHHHHHHHHH
Confidence 345678999999999999999999999999999999874321 1236678899999999999999
Q ss_pred hcccccccc------chhHHHHHHHHHHHHHHHHHHhCCCCCcchhhccccccchhccccchHHHHHHHHhHHHHHHhHH
Q 041810 437 IGPLENLKL------DGPALDGVFQAFNSYVSLLINALPGSTENEENLEGFSNKIVSMAETESQQVALLANASLLADELL 510 (750)
Q Consensus 437 ~~~L~~~~L------~~~~~~~l~~lf~~y~~~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~qq~~ll~Na~~l~d~ll 510 (750)
...|.-|+- .-.+.+.+++....|.+.+.+-.+....++ + ..+-+.++.|...+.. .|
T Consensus 69 ~~~L~WpD~~~~~~f~t~l~~~i~~~~~~Y~~~l~~~~~~~~~~e------~---------~~~~Cv~lNNie~lR~-~L 132 (341)
T 3swh_A 69 IKKLECPDPQIVGHYMRRFAKTISNVLLQYADIVSKDFASYCSKE------K---------EKVPCILMNNTQQLRV-QL 132 (341)
T ss_dssp HHHSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTT------S---------CHHHHHHHHHHHHHHH-HH
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh------c---------ccchhhhcccHHHHHH-HH
Confidence 999987774 233566667777779998877655322121 1 0234677888888874 44
Q ss_pred HHHHHhh
Q 041810 511 PRAALKL 517 (750)
Q Consensus 511 p~~~~~~ 517 (750)
......+
T Consensus 133 ~~l~~~l 139 (341)
T 3swh_A 133 EKMFEAM 139 (341)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 4444444
No 6
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=45.57 E-value=6.2e+02 Score=35.13 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041810 81 IRTSKEISVLEGQLLSMRNLLATQSALVQGLA 112 (750)
Q Consensus 81 I~aSkEIs~LE~Em~~L~~lLs~q~~lI~~L~ 112 (750)
.+|++.|..|+.++..++..|.+.......+.
T Consensus 1930 ~et~~~V~~l~~~L~~~~~~L~~k~~ea~~~l 1961 (3245)
T 3vkg_A 1930 RDTEAQVKDLQVSLAQKNRELDVKNEQANQKL 1961 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33777777777777777766666544444443
No 7
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=41.89 E-value=3.3e+02 Score=28.63 Aligned_cols=268 Identities=10% Similarity=0.054 Sum_probs=125.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhccCcccc--CCCCCCCCCC---CC--CC-cccCCCCccccchhHHHHHH
Q 041810 357 PVILRSFRPSVEHALSAYLKRIEKSSAALAAADDWLLA--YPPAGARPFS---ST--NS-LNTAVGSQPKLSTSAHKFNA 428 (750)
Q Consensus 357 ~~L~~lL~p~ve~al~~~~~~i~e~i~~~~~~d~W~~~--~~~~~~~~~~---g~--~~-~~~~~~~~~~LT~S~~~F~~ 428 (750)
.+|..++..+.+-.+.... ..++..+.+|++.|. .+..--.+.. +. .. -...-++..+-|+..-..++
T Consensus 7 ~~L~~l~d~Y~elLl~~~~----~~f~~il~~D~y~Pm~V~~~eey~~v~~~~~~~~~~~~~~~fP~~lPFS~~vP~~c~ 82 (325)
T 2a2f_X 7 ELLHNMRDHYNEVLLQRWV----HVFREILDKEQFLPMVVQNTEEYECIIERFPFHSEQLENAPFPKKFPFSRMVPEVYH 82 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTCBCCCCCHHHHHHHHTTSCCCCCCCC----CCCSSSBTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHhcCCCCeeeeCCHHHHHHHHhcCCCCCcccccCCCCcccCccHHHHHHHH
Confidence 3455556666555544444 444555688998875 1111100000 00 00 00123566677888877788
Q ss_pred HHHHHHhhhcccccc------ccchhHHHHHHHHHHHHHH-HHHHhCCCCCcchhhccccccchhccccchHHHHHHHHh
Q 041810 429 LVQELLEDIGPLENL------KLDGPALDGVFQAFNSYVS-LLINALPGSTENEENLEGFSNKIVSMAETESQQVALLAN 501 (750)
Q Consensus 429 ~v~~f~ed~~~L~~~------~L~~~~~~~l~~lf~~y~~-~l~~al~~~~~~~~~~~~~~~~~v~~a~t~~qq~~ll~N 501 (750)
.|..|++++..-..- ++...+...+..++..-+. .|.+-+..+. -+.+|-.-|+.|
T Consensus 83 ~ir~fi~~~~~F~~~~~~~~~eidd~lrks~d~LL~~~v~~~L~~~i~~~~-----------------~~l~qi~Qi~iN 145 (325)
T 2a2f_X 83 QAKEFMYACMKFAEELTLSPNEVAAMVRKAANLLLTRSFSGCLSVVFRQPS-----------------ITLTQLIQIIID 145 (325)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-----------------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhccC-----------------CcHHHHHHHHHH
Confidence 887777777655432 2333333444444433222 2222222211 123455668899
Q ss_pred HHHHHHhH--HHHHHHhhccCcCCcccCCcCCcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccc
Q 041810 502 ASLLADEL--LPRAALKLLPLSSNRMEMTPRRASDRQNRFPEQREWKRKLQRLVDRLRDSFCRTHALDIIFTEDGEIRLN 579 (750)
Q Consensus 502 a~~l~d~l--lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~e~~~~l~~~~~kl~~~fc~~~~~~~i~~~~~~~~l~ 579 (750)
..++...+ |.....+.....+.+ . ..+.. .++ ..+...++-...-|+++|-+++-+.+-
T Consensus 146 l~~le~ac~~le~~l~~~~~~~~~~---~-l~a~~---------~f~-~~r~~Ae~~I~~~v~~KIDdfl~la~y----- 206 (325)
T 2a2f_X 146 TQYLEKAGPFLDEFVCHMTNTERSV---S-QTPSA---------MFH-VARQDAEKQVGLRICSKIDEFFELSAY----- 206 (325)
T ss_dssp HHHHHTTHHHHHHHHHHHHTCCC-----------C---------CSC-CCTTHHHHHHHHHHHHHHHHHHTTCCT-----
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc---c-hhHHH---------HHH-HHHHHHHHHHHHHHHHHHHHHHHhccc-----
Confidence 99987532 222222332111100 0 00000 011 112333455556678899999833222
Q ss_pred hhhHhhccCCCCCCCCCCChHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHhcCChhhHHhhh-cCCccC
Q 041810 580 AEIYTCMDESMEEPEWFPSPIFQELFIKLTRMASIASDMFVGRERFATILLMRLTETVILWLADDQSFWAEIE-EGPKPL 658 (750)
Q Consensus 580 ~~~y~~~~~~~~~~~~~ps~~fq~lf~~l~~l~~~~~~~~~g~e~~~~~ll~rl~e~v~~~ls~~~~~w~~~e-~~~~~~ 658 (750)
|=.+.+|.-=||.--+.|-.=|+.+=+ +--.+-+. +...+..+ ...++| ..+|+.+- ++++.+
T Consensus 207 -------DW~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~~--v~~~~~~~----a~~his--~~l~~~Ll~~~vk~i 270 (325)
T 2a2f_X 207 -------DWLLVEPPGIASAFITDMISYLKSTFD-SFAFKLPH--IAQAACRR----TFEHIA--EKIYSIMYDEDVKQI 270 (325)
T ss_dssp -------TCC----CCSCCHHHHHHHHHHHHHHH-TTTTTSHH--HHHHHHHH----HHHHHH--HHHHHHHTC------
T ss_pred -------CCCCCCCCCCccHHHHHHHHHHHHHHH-HHHcCCHH--HHHHHHHH----HHHHHH--HHHHHHhcCcchhhc
Confidence 211122222477766666555554433 11112221 22222222 233445 35666555 477999
Q ss_pred CccchhhhhhHHHHHHHHHhcC
Q 041810 659 GPLGLQQFYLDMEFVMLFSSQG 680 (750)
Q Consensus 659 ~~~glqq~~Ldm~f~~~~a~~g 680 (750)
.+.|++||=+|++|+..||...
T Consensus 271 n~~av~~~~~Dv~~lE~fa~~~ 292 (325)
T 2a2f_X 271 STGALTQINLDLMQCEFFAASE 292 (325)
T ss_dssp CCTTHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999653
No 8
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=41.39 E-value=1.5e+02 Score=24.59 Aligned_cols=56 Identities=5% Similarity=0.097 Sum_probs=42.1
Q ss_pred HHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHHHH
Q 041810 147 SVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLADQ 208 (750)
Q Consensus 147 L~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~~~ 208 (750)
+.++-..+|-+|.+.+|+.-..++.+-++.+..++.. -.+.|..+=..|...+.+.
T Consensus 4 I~EIEk~ID~aIE~edyE~L~~LL~kREkLlk~L~~e------~l~~i~EkDk~R~~~Ik~~ 59 (79)
T 2fzt_A 4 IDEIERKIDEAIEKEDYETLLSLLNKRKELMEGLPKD------KLSEILEKDRKRLEIIEKR 59 (79)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCcHH------HHHHHHHHHHHHHHHHHHH
Confidence 5667788999999999999999999999998865432 3456666655665555544
No 9
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=28.29 E-value=1.9e+02 Score=22.82 Aligned_cols=86 Identities=20% Similarity=0.142 Sum_probs=43.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHH---HHHHHHHHHhc-CCCCChHHHHHHH
Q 041810 152 ETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQ---KLADQLAGTIC-QPSTRGVELRSAV 227 (750)
Q Consensus 152 deLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~---~L~~~L~~~l~-~~s~~~~elr~aV 227 (750)
..-..+...++|++|+..+.++-.... +.+ ... .....+..... .-...+.+.+. .|. .........
T Consensus 9 ~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~----~~~-~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a 79 (118)
T 1elw_A 9 EKGNKALSVGNIDDALQCYSEAIKLDP---HNH----VLY-SNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT---TCH----HHH-HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCC---CcH----HHH-HHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 344567789999999999988754321 111 111 11111111111 11112222222 232 233444445
Q ss_pred HHHHhcCCCcHHHHHHHHH
Q 041810 228 LALKKLGDGPRSHTLLLKS 246 (750)
Q Consensus 228 ~lL~rLG~~~~A~~lFL~~ 246 (750)
..+.++|+.++|...|.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHH
Confidence 6778889988888777554
No 10
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.93 E-value=89 Score=22.80 Aligned_cols=40 Identities=33% Similarity=0.452 Sum_probs=0.0
Q ss_pred chhhhhhccCCCCChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHHH
Q 041810 21 LSDRLKAFKSSQFDPDAYVASKSQHMNEKEIRHLCSYLVELKKASA 66 (750)
Q Consensus 21 ~~~~~~~f~~~~Fdpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t~ 66 (750)
+...+..+..+.|.||....- +.+++.++.+|..+|..+.
T Consensus 5 lkselqalkkegfspeelaal------eselqalekklaalksklq 44 (48)
T 1g6u_A 5 LKSELQALKKEGFSPEELAAL------ESELQALEKKLAALKSKLQ 44 (48)
T ss_dssp HHHHHHHHHHTTCSHHHHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH------HHHHHHHHHHHHHHHHHHH
No 11
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=25.65 E-value=2.9e+02 Score=23.81 Aligned_cols=66 Identities=12% Similarity=0.297 Sum_probs=47.1
Q ss_pred ChhHHHHHhhhcCCHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 041810 34 DPDAYVASKSQHMNEKEIRHLCSYLVELKKAS----------AEEMRRCVYANYAAFIRTSKEISVLEGQLLSMRNL 100 (750)
Q Consensus 34 dpe~Yv~~ll~~~~e~eL~~~~~~L~~lk~~t----------~sdLqknVY~NY~~FI~aSkEIs~LE~Em~~L~~l 100 (750)
-|-.|...+..+. ++.|..++..+..+.+.+ -.+|..-+-+-|..||.-+..+..+-.++..++..
T Consensus 5 ~P~~yF~~lv~~f-e~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 5 APADYFRVLVQQF-EVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp CHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777766544 456666666666554432 24788888889999999999999998888888844
No 12
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=24.59 E-value=5e+02 Score=25.30 Aligned_cols=119 Identities=18% Similarity=0.113 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcC
Q 041810 48 EKEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTSKEIS-VLEGQLLSMRNLLATQSALVQGLAEGARIDSLFAVTED 126 (750)
Q Consensus 48 e~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aSkEIs-~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~~L~e~veg 126 (750)
++++..++......+... ..+-..|+.|..-|+|+. .||.++.++.+-.+.....+..|..-+ ..|..+.+.
T Consensus 9 ~ee~~ywk~~~~~~~q~~-----~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~--e~~k~K~~~ 81 (189)
T 2v71_A 9 KEETAYWKELSMKYKQSF-----QEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEV--EALKEKLEH 81 (189)
T ss_dssp HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 456666666555555322 234568999999999997 799999999988888888888877655 345444444
Q ss_pred CccccccccccccCccchhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHH
Q 041810 127 SDDDDISSLKNEGLSNMENWSVEFLETLEVLLAERRVDEALAALEEGQNTV 177 (750)
Q Consensus 127 ~~~e~l~~~~~~~~~~~l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l 177 (750)
+..+ .+.... .+-+-+.-+.+.-+.|-.. -|+.+++-+.++...+..
T Consensus 82 ~~~e-~~~~~~-~Lq~el~~l~~~~~~l~~~--ireLEq~NDdlEr~~R~~ 128 (189)
T 2v71_A 82 QYAQ-SYKQVS-VLEDDLSQTRAIKEQLHKY--VRELEQANDDLERAKRAT 128 (189)
T ss_dssp HHHH-HHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHH-HHHHHHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHH
Confidence 3221 000000 0001111222333333333 356677777777766654
No 13
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=21.84 E-value=8.1e+02 Score=26.79 Aligned_cols=153 Identities=12% Similarity=0.105 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 041810 49 KEIRHLCSYLVELKKASAEEMRRCVYANYAAFIRTS---------KEISVLEGQLLSMRNLLATQSALVQGLAEGARIDS 119 (750)
Q Consensus 49 ~eL~~~~~~L~~lk~~t~sdLqknVY~NY~~FI~aS---------kEIs~LE~Em~~L~~lLs~q~~lI~~L~~~~~l~~ 119 (750)
..++..-..+.......++.|+..|++-...|+.-. ||-.+++.++..+...+..+...+........ ..
T Consensus 84 ~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~-~~ 162 (486)
T 3haj_A 84 MAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHH-AA 162 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 456666677788888999999999999999998753 67778888888888777666665555444321 00
Q ss_pred hhhhhcCC-ccccccccccccCccchhHHHHhHHHHH-----HHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHH
Q 041810 120 LFAVTEDS-DDDDISSLKNEGLSNMENWSVEFLETLE-----VLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFS 193 (750)
Q Consensus 120 L~e~veg~-~~e~l~~~~~~~~~~~l~wL~elpdeLD-----v~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~ 193 (750)
-.+ .+.- .++... ..+...+ .+-+..+-..++ +.-++.+|..+|..+.+.+..+... . +..+..
T Consensus 163 cke-~e~a~~~~~~a-~~d~~~t--~k~~eK~~~k~~k~~~~~~~a~~~Y~~~v~~~n~~~~~y~~~--~----~~~~~~ 232 (486)
T 3haj_A 163 CKE-EKLAISREANS-KADPSLN--PEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMEN--M----EQVFEQ 232 (486)
T ss_dssp HHH-HHHHHHHHHHH-HHCCCSC--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHH--H----HHHHHH
T ss_pred HHH-HHHHHHHHHHh-hccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----HHHHHH
Confidence 000 0000 000000 0000000 011111112222 2234677777777777766554321 1 135667
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 041810 194 LQSAISEQRQKLADQLAGT 212 (750)
Q Consensus 194 i~~ki~er~~~L~~~L~~~ 212 (750)
++.--.+|...|.+.|...
T Consensus 233 lQ~lEeeRi~~lK~~L~~y 251 (486)
T 3haj_A 233 CQQFEEKRLRFFREVLLEV 251 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7777777888887777664
No 14
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=20.25 E-value=3.1e+02 Score=21.30 Aligned_cols=22 Identities=9% Similarity=0.108 Sum_probs=17.5
Q ss_pred HHHHhccCHHHHHHHHHHHHHH
Q 041810 155 EVLLAERRVDEALAALEEGQNT 176 (750)
Q Consensus 155 Dv~IAer~feeAV~ll~k~~~~ 176 (750)
.++...++|++|+..+.++-+.
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~ 35 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQL 35 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHHh
Confidence 4567789999999999887553
No 15
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=20.18 E-value=1.7e+02 Score=27.53 Aligned_cols=59 Identities=14% Similarity=0.141 Sum_probs=42.3
Q ss_pred hhHHHHhHHHHHHHHhccCHHHHHHHHHHHHHHHHhhhhcCCCChHHHHHHHHHHHHHHHHHH
Q 041810 144 ENWSVEFLETLEVLLAERRVDEALAALEEGQNTVREAKHRCTLSRSAIFSLQSAISEQRQKLA 206 (750)
Q Consensus 144 l~wL~elpdeLDv~IAer~feeAV~ll~k~~~~l~~~~~~~~~~~~~~~~i~~ki~er~~~L~ 206 (750)
..|+.-+-..=..+...++|++|+..++++-++-.+.... . ..+..++.++.+|+++|.
T Consensus 99 ~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~---~-~~~~~~~~~~~~~~~k~~ 157 (159)
T 2hr2_A 99 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE---T-PGKERMMEVAIDRIAQLG 157 (159)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC---C-TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH---H-HHHHHHHHHHHHHHHHhc
Confidence 4455444556677888999999999999998876553321 1 146778888888888774
Done!