BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041813
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JHN|A Chain A, Crystal Structure Of The Lumenal Domain Of Calnexin
Length = 424
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 160/368 (43%), Positives = 217/368 (58%), Gaps = 17/368 (4%)
Query: 10 FDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQY 69
+DG+W V E K +K G D GL++ +A+ +AI +LN+ ++ +I+QY
Sbjct: 57 YDGKWEVDEM-------KETKLPG--DKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQY 107
Query: 70 DVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNP 129
+V QN +ECGGAY+K L + + +F + +PY+IMFGPDKCG K+HFIF+HKNP
Sbjct: 108 EVNFQNGIECGGAYVKLLSK-TPELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNP 166
Query: 130 KSGEYVEHHLKDP----PSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFD 185
K+G Y E H K P + +DK +H+YT +L PDN +IL+D L+ D
Sbjct: 167 KTGVYEEKHAKRPDADLKTYFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLLN--DMT 224
Query: 186 PPLIPTKMIXXXXXXXXXXXXXRAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLXXX 245
PP+ P++ I R KIPDP+AVKP DW+ED+PA+I D+EA KP+GWL
Sbjct: 225 PPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDE 284
Query: 246 XXXXXXXXXSKPXXXXXXXXXXXXAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPL 305
KP AP++ANPKC APGCG W+RPM NP YKGKW P+
Sbjct: 285 PEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPM 344
Query: 306 IENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVA 364
I+NPNY GIWKPR+I NP +FE EP P SA+G+E+W+M I FDN ++ D V
Sbjct: 345 IDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVV 404
Query: 365 DLYRETTW 372
D + W
Sbjct: 405 DDWANDGW 412
>pdb|3RG0|A Chain A, Structural And Functional Relationships Between The Lectin
And Arm Domains Of Calreticulin
Length = 332
Score = 135 bits (340), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 109/371 (29%), Positives = 163/371 (43%), Gaps = 90/371 (24%)
Query: 8 DPFDGRWVVSE--NDDYKGVWKHSKSEG--HDDYGLLVSEKARKYAIVKELNENLNIKSQ 63
D + RWV S+ +D K V K G D GL S+ AR YA+ + E + K Q
Sbjct: 17 DAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQ 75
Query: 64 KVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCG-NTNKVHF 122
+++Q+ V+ + ++CGG Y+K +G ++ +S Y+IMFGPD CG T KVH
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLF---PSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHV 132
Query: 123 IFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEK 182
IF +K + KD D+F+H+YT +++PDN ++ ID + + +
Sbjct: 133 IFNYKGKNVLINKDIRSKD------DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 186
Query: 183 DFDPPLIPTKMIXXXXXXXXXXXXXRAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWL 242
DF PP KI DP+A KP DWDE A+I+D KPE W
Sbjct: 187 DFLPP---------------------KKIKDPDAAKPEDWDE--RAKIDDPTDSKPEDW- 222
Query: 243 XXXXXXXXXXXXSKPXXXXXXXXXXXXAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWH 302
+ G G G+W
Sbjct: 223 -------------------------------------DKGGSG-------------GEWK 232
Query: 303 APLIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDE 361
I+NP+Y G W +I NP Y A ++ + +G+++W ++ G +FDN LIT DE
Sbjct: 233 PRQIDNPDYKGTWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDE 292
Query: 362 NVADLYRETTW 372
A+ + TW
Sbjct: 293 AYAEEFGNETW 303
>pdb|3O0V|A Chain A, Crystal Structure Of The Calreticulin Lectin Domain
Length = 273
Score = 89.0 bits (219), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/185 (33%), Positives = 96/185 (51%), Gaps = 15/185 (8%)
Query: 8 DPFDGRWVVSE--NDDYKGVWKHSKSEG--HDDYGLLVSEKARKYAIVKELNENLNIKSQ 63
D + RWV S+ +D K V K G D GL S+ AR YA+ + E + K Q
Sbjct: 17 DAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQ 75
Query: 64 KVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCG-NTNKVHF 122
+++Q+ V+ + ++CGG Y+K +G ++ +S Y+IMFGPD CG T KVH
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLF---PSGLDQKDMHGDSEYNIMFGPDICGPGTKKVHV 132
Query: 123 IFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEK 182
IF +K + KD D+F+H+YT +++PDN ++ ID + + +
Sbjct: 133 IFNYKGKNVLINKDIRSKD------DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 186
Query: 183 DFDPP 187
DF PP
Sbjct: 187 DFLPP 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 333 FEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTW 372
++ + +G+++W ++ G +FDN LIT DE A+ + TW
Sbjct: 205 YDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|3O0W|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|A Chain A, Structural Basis Of Carbohydrate Recognition By
Calreticulin
pdb|3O0X|B Chain B, Structural Basis Of Carbohydrate Recognition By
Calreticulin
Length = 273
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 15/185 (8%)
Query: 8 DPFDGRWVVSE--NDDYKGVWKHSKSEG--HDDYGLLVSEKARKYAIVKELNENLNIKSQ 63
D + RWV S+ +D K V K G D GL S+ AR YA+ + E + K Q
Sbjct: 17 DAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQ 75
Query: 64 KVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCG-NTNKVHF 122
+++Q+ V+ + ++CGG Y+K +G ++ +S Y+I FGPD CG T KVH
Sbjct: 76 TLVVQFTVKHEQNIDCGGGYVKLF---PSGLDQKDXHGDSEYNIXFGPDICGPGTKKVHV 132
Query: 123 IFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEK 182
IF +K + KD D+F+H+YT +++PDN ++ ID + + +
Sbjct: 133 IFNYKGKNVLINKDIRSKD------DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 186
Query: 183 DFDPP 187
DF PP
Sbjct: 187 DFLPP 191
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 333 FEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTW 372
++ + +G+++W ++ G +FDN LIT DE A+ + TW
Sbjct: 205 YDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|3POS|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|B Chain B, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POS|C Chain C, Crystal Structure Of The Globular Domain Of Human
Calreticulin
pdb|3POW|A Chain A, Crystal Structure Of The Globular Domain Of Human
Calreticulin
Length = 265
Score = 82.4 bits (202), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 92/184 (50%), Gaps = 15/184 (8%)
Query: 8 DPFDGRWVVSE--NDDYKGVWKHSKSEGHD--DYGLLVSEKARKYAIVKELNENLNIKSQ 63
D + RW+ S+ +D K V K G + D GL S+ AR YA+ E + K Q
Sbjct: 22 DGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQ 80
Query: 64 KVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCG-NTNKVHF 122
+++Q+ V+ + ++CGG Y+K + +S Y+IMFGPD CG T KVH
Sbjct: 81 TLVVQFTVKHEQNIDCGGGYVKLF---PNSLDQTDMHGDSEYNIMFGPDICGPGTKKVHV 137
Query: 123 IFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEK 182
IF +K + KD D+F+H+YT +++PDN ++ ID + + +
Sbjct: 138 IFNYKGKNVLINKDIRCKD------DEFTHLYTLIVRPDNTYEVKIDNSQVESGSLEDDW 191
Query: 183 DFDP 186
DF P
Sbjct: 192 DFLP 195
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 333 FEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTW 372
++ +G+++W ++ G +FDN LIT DE A+ + TW
Sbjct: 205 YDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETW 244
>pdb|1HHN|A Chain A, Calreticulin P-Domain
Length = 101
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 41/116 (35%), Positives = 52/116 (44%), Gaps = 23/116 (19%)
Query: 210 KIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLXXXXXXXXXXXXSKPXXXXXXXXXXXX 269
KI DP+A KP DWDE A+I+D KPE W KP
Sbjct: 3 KIKDPDAAKPEDWDER--AKIDDPTDSKPEDW-------------DKPEHIPD------- 40
Query: 270 APKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHY 325
P P+ + G+W P+ NP YKG+W I+NP+Y G W +I NP Y
Sbjct: 41 -PDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEY 95
>pdb|1K9C|A Chain A, Solution Structure Of Calreticulin P-Domain Subdomain
(Residues 189-261)
Length = 74
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 45/109 (41%), Gaps = 37/109 (33%)
Query: 210 KIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLXXXXXXXXXXXXSKPXXXXXXXXXXXX 269
KI DP+A KP DWDE A+I+D KPE W KP
Sbjct: 3 KIKDPDAAKPEDWDER--AKIDDPTDSKPEDW-------------DKPEH---------- 37
Query: 270 APKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPR 318
+ +P ++P + G+W P+I+NP Y G WKPR
Sbjct: 38 ---IPDPDA---------KKPEDWDEEMDGEWEPPVIQNPEYKGEWKPR 74
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/34 (55%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 208 RAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGW 241
RAKI DP KP DW D P I D +A KPE W
Sbjct: 18 RAKIDDPTDSKPEDW--DKPEHIPDPDAKKPEDW 49
>pdb|3ML1|A Chain A, Crystal Structure Of The Periplasmic Nitrate Reductase
From Cupriavidus Necator
Length = 802
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 101 NNSPYSIMFGPDKCGNTNKVHFIFKHK--------NPKSGEYVEHHLKDPPSVPSDKFSH 152
NSP+S+ P CG +V F H+ NPK E E K PP DK
Sbjct: 375 GNSPFSLTGQPSACGTAREVG-TFSHRLPADMVVTNPKHREEAERIWKLPPGTIPDKPG- 432
Query: 153 VYTAVLQPDNILQILIDGK 171
Y AVLQ ++L DGK
Sbjct: 433 -YDAVLQN----RMLKDGK 446
>pdb|3O5A|A Chain A, Crystal Structure Of Partially Reduced Periplasmic Nitrate
Reductase From Cupriavidus Necator Using Ionic Liquids
Length = 802
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 101 NNSPYSIMFGPDKCGNTNKVHFIFKHK--------NPKSGEYVEHHLKDPPSVPSDKFSH 152
NSP+S+ P CG +V F H+ NPK E E K PP DK
Sbjct: 375 GNSPFSLTGQPSACGTAREVG-TFSHRLPADMVVTNPKHREEAERIWKLPPGTIPDKPG- 432
Query: 153 VYTAVLQPDNILQILIDGK 171
Y AVLQ ++L DGK
Sbjct: 433 -YDAVLQN----RMLKDGK 446
>pdb|1A57|A Chain A, The Three-Dimensional Structure Of A Helix-Less Variant
Of Intestinal Fatty Acid Binding Protein, Nmr, 20
Structures
Length = 116
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 10 FDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQY 69
FDG W V N++Y G HD+ L ++++ K+ + E+ N ++ V+ +
Sbjct: 2 FDGTWKVDRNENYSG--------AHDNLKLTITQEGNKFTV----KESSNFRNIDVVFEL 49
Query: 70 DVRLQNELECG 80
V L G
Sbjct: 50 GVDFAYSLADG 60
>pdb|1IFC|A Chain A, Refinement Of The Structure Of Recombinant Rat
Intestinal Fatty Acid- Binding Apoprotein At 1.2
Angstroms Resolution
Length = 132
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 10 FDGRWVVSENDDYKGVWK-------HSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKS 62
FDG W V N++Y+ + K HD+ L ++++ K+ + E+ N ++
Sbjct: 3 FDGTWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTV----KESSNFRN 58
Query: 63 QKVILQYDVRLQNELECG 80
V+ + V L G
Sbjct: 59 IDVVFELGVDFAYSLADG 76
>pdb|1AEL|A Chain A, Nmr Structure Of Apo Intestinal Fatty Acid-Binding
Protein, 20 Structures
pdb|1ICM|A Chain A, Escherichia Coli-Derived Rat Intestinal Fatty Acid
Binding Protein With Bound Myristate At 1.5 A
Resolution And I- Fabparg106-->gln With Bound Oleate At
1.74 A Resolution
pdb|1IFB|A Chain A, Refined Apoprotein Structure Of Rat Intestinal Fatty
Acid Binding Protein Produced In Escherichia Coli
pdb|1URE|A Chain A, Nmr Structure Of Intestinal Fatty Acid-Binding Protein
Complexed With Palmitate, 20 Structures
pdb|2IFB|A Chain A, Crystal Structure Of Rat Intestinal Fatty-acid-binding
Protein. Refinement And Analysis Of The Escherichia
Coli- Drived Protein With Bound Palmitate
pdb|3AKN|A Chain A, X-Ray Structure Of Ifabp From Human And Rat With Bound
Fluorescent Fatty Acid Analogue
Length = 131
Score = 28.5 bits (62), Expect = 8.7, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 10 FDGRWVVSENDDYKGVWK-------HSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKS 62
FDG W V N++Y+ + K HD+ L ++++ K+ + E+ N ++
Sbjct: 2 FDGTWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTV----KESSNFRN 57
Query: 63 QKVILQYDVRLQNELECG 80
V+ + V L G
Sbjct: 58 IDVVFELGVDFAYSLADG 75
>pdb|1ICN|A Chain A, Escherichia Coli-Derived Rat Intestinal Fatty Acid
Binding Protein With Bound Myristate At 1.5 A
Resolution And I- Fabparg106-->gln With Bound Oleate At
1.74 A Resolution
Length = 131
Score = 28.5 bits (62), Expect = 9.5, Method: Composition-based stats.
Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 10 FDGRWVVSENDDYKGVWK-------HSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKS 62
FDG W V N++Y+ + K HD+ L ++++ K+ + E+ N ++
Sbjct: 2 FDGTWKVDRNENYEKFMEKMGINVVKRKLGAHDNLKLTITQEGNKFTV----KESSNFRN 57
Query: 63 QKVILQYDVRLQNELECG 80
V+ + V L G
Sbjct: 58 IDVVFELGVDFAYSLADG 75
>pdb|2WJS|A Chain A, Crystal Structure Of The Lg1-3 Region Of The Laminin
Alpha2 Chain
Length = 608
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 305 LIENPNYNGIWKPRQIQNPHYFEVAEPNFEPISAVGIEIWT 345
++ +P+Y G+ K ++N + +P F ++AV I++ T
Sbjct: 369 ILSSPDYVGVTKGCSLENVYTVSFPKPGFVELAAVSIDVGT 409
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.136 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,006,692
Number of Sequences: 62578
Number of extensions: 593588
Number of successful extensions: 1377
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1307
Number of HSP's gapped (non-prelim): 39
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)