Query 041813
Match_columns 543
No_of_seqs 255 out of 742
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 10:54:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041813.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041813hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0675 Calnexin [Posttranslat 100.0 4E-149 9E-154 1170.4 32.7 421 2-464 43-482 (558)
2 PF00262 Calreticulin: Calreti 100.0 6E-144 1E-148 1111.0 13.0 351 1-357 2-367 (367)
3 KOG0674 Calreticulin [Posttran 100.0 1E-109 3E-114 835.9 25.2 329 1-383 22-359 (406)
4 KOG0675 Calnexin [Posttranslat 100.0 2.6E-34 5.6E-39 304.0 10.8 246 189-460 262-518 (558)
5 PF00262 Calreticulin: Calreti 100.0 3.1E-34 6.7E-39 297.2 1.9 123 190-318 217-341 (367)
6 KOG0674 Calreticulin [Posttran 99.9 9E-22 2E-26 200.3 16.0 248 52-357 21-314 (406)
7 PF07423 DUF1510: Protein of u 69.9 4.4 9.5E-05 40.9 3.3 22 437-458 15-36 (217)
8 PRK10404 hypothetical protein; 65.8 11 0.00024 33.8 4.7 29 419-447 65-93 (101)
9 PF06439 DUF1080: Domain of Un 59.4 1.4E+02 0.0031 27.3 11.6 144 4-177 4-154 (185)
10 COG4575 ElaB Uncharacterized c 59.4 10 0.00022 34.7 3.2 24 425-448 74-97 (104)
11 PF05957 DUF883: Bacterial pro 57.7 17 0.00036 31.4 4.2 28 420-447 59-86 (94)
12 PRK10132 hypothetical protein; 54.7 19 0.00042 32.7 4.3 25 424-448 76-100 (108)
13 PF05568 ASFV_J13L: African sw 46.4 17 0.00037 35.3 2.8 29 451-479 47-75 (189)
14 PF07210 DUF1416: Protein of u 46.3 24 0.00052 31.2 3.4 28 62-90 5-32 (85)
15 PF12911 OppC_N: N-terminal TM 41.5 57 0.0012 25.2 4.5 33 424-456 6-38 (56)
16 PF15069 FAM163: FAM163 family 39.4 33 0.00072 33.0 3.5 19 436-454 8-26 (143)
17 PF12301 CD99L2: CD99 antigen 33.7 43 0.00094 32.8 3.4 23 434-456 114-136 (169)
18 PHA02513 V1 structural protein 33.3 69 0.0015 30.0 4.4 29 405-437 32-60 (135)
19 PF02439 Adeno_E3_CR2: Adenovi 32.7 49 0.0011 25.4 2.8 12 434-445 2-13 (38)
20 PF08374 Protocadherin: Protoc 31.4 37 0.00081 34.7 2.6 9 472-480 80-88 (221)
21 PF01299 Lamp: Lysosome-associ 30.0 44 0.00096 34.6 2.9 12 451-462 288-299 (306)
22 PF13908 Shisa: Wnt and FGF in 29.5 26 0.00057 33.4 1.1 9 437-445 81-89 (179)
23 PF15183 MRAP: Melanocortin-2 29.2 86 0.0019 28.0 4.1 12 436-447 42-53 (90)
24 KOG3285 Spindle assembly check 29.0 24 0.00052 35.3 0.8 30 212-241 157-186 (203)
25 PF14575 EphA2_TM: Ephrin type 28.3 78 0.0017 26.9 3.6 21 438-458 4-24 (75)
26 PF04478 Mid2: Mid2 like cell 26.1 19 0.00041 34.9 -0.5 19 438-456 56-74 (154)
27 PF01034 Syndecan: Syndecan do 25.6 23 0.0005 29.9 0.0 12 433-444 7-18 (64)
28 PF04971 Lysis_S: Lysis protei 24.9 1.1E+02 0.0023 26.3 3.8 34 425-458 23-56 (68)
29 PF10717 ODV-E18: Occlusion-de 22.2 1.4E+02 0.0029 26.7 4.0 16 433-448 23-38 (85)
30 PF07691 PA14: PA14 domain; I 20.0 1.1E+02 0.0024 26.9 3.2 26 151-176 59-84 (145)
31 PF01102 Glycophorin_A: Glycop 20.0 1E+02 0.0022 28.8 3.1 8 451-458 82-89 (122)
No 1
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.3e-149 Score=1170.42 Aligned_cols=421 Identities=54% Similarity=0.994 Sum_probs=390.6
Q ss_pred ccccCCCC--CCCCceeccCC---------CCcceEEEcCCC---CCCCcceeeccccchhHHhhhcccccccCCCcEEE
Q 041813 2 FYEPFDDP--FDGRWVVSEND---------DYKGVWKHSKSE---GHDDYGLLVSEKARKYAIVKELNENLNIKSQKVIL 67 (543)
Q Consensus 2 F~E~Fd~~--w~~rWv~S~~~---------~y~G~W~~~~~~---~~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVv 67 (543)
|+++||.+ |. |||.|.++ +|.|+|.++++. .++|+|||+++.|||||||+.|++||+++.++|||
T Consensus 43 f~d~Fd~~~~~~-rWi~S~akk~d~~~ei~kY~G~W~~ee~~~~~~~~D~GLvvkskakhhaI~a~L~~P~~~~~~plVV 121 (558)
T KOG0675|consen 43 FADHFDGGTAST-RWILSWAKKDDIDDEIAKYDGVWDLEEPPKSHLAGDYGLVVKSKAKHHAISAELEEPFNFKEKPLVV 121 (558)
T ss_pred chhcccccccce-eeeeeecccccccchhhhccceeeeccCccccCCcccceEeeccchhhHHHhhhcCCcccCCCCeEE
Confidence 78899863 45 89999874 899999999765 38999999999999999999999999999999999
Q ss_pred EEEEeeccccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCC---
Q 041813 68 QYDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPS--- 144 (543)
Q Consensus 68 QYEVK~q~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~--- 144 (543)
|||||+|+||+|||||||||+.+.....+++|+++|||+|||||||||.+++|||||||+||+||+|+|||++.|+.
T Consensus 122 QYEvk~qeg~eCGGAYlKLLs~~~~~~~l~~f~dktpy~ImFGPDKCG~~~kvhFIf~hknp~tG~~~ekh~~~pp~~l~ 201 (558)
T KOG0675|consen 122 QYEVKFQEGLECGGAYLKLLSQGTAGENLKNFDDKTPYTIMFGPDKCGETNKVHFIFRHKNPITGEISEKHLKAPPSSLK 201 (558)
T ss_pred EEEEecCCCcccchhHHHhhcccccccchhccCCCCCeEEEeCccccCCcccEEEEEeeccCCCCeeehhhccCCCcccc
Confidence 99999999999999999999987788899999999999999999999999999999999999999999999999998
Q ss_pred -CCCCCCcceEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCC
Q 041813 145 -VPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWD 223 (543)
Q Consensus 145 -~~~DklTHLYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWD 223 (543)
..+|++||||||||+|||||+|||||++|+.|||+ +||.||++||++|+||+|.||+|||+|++||||+|+||+|||
T Consensus 202 ~~~~d~~tHLYTLvl~pd~sfeI~vDg~vv~~G~ll--~Df~Ppv~Pp~eI~Dp~d~KP~dWDer~kIpDpnAvKPdDWD 279 (558)
T KOG0675|consen 202 KPFDDKLTHLYTLVLKPDNTFEIRVDGKVVYKGSLL--TDFEPPVTPPKEIPDPSDKKPEDWDERAKIPDPNAVKPDDWD 279 (558)
T ss_pred cccccCCceeEEEEecCCCeEEEEecCcEEEecccc--cccCCCCCCccccCCcccCCccchhhhhcCCCcccCCccccC
Confidence 57799999999999999999999999999999999 899999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCC
Q 041813 224 EDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHA 303 (543)
Q Consensus 224 E~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~p 303 (543)
|++|++|+|++|+||++|++|||++|+||+|+||+|||+++||+|++|+|.||+|..++|||+|++|||.||+|||+|.+
T Consensus 280 E~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG~wk~p~I~NP~YKGkw~~ 359 (558)
T KOG0675|consen 280 EDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCGEWKPPMINNPNYKGKWIL 359 (558)
T ss_pred cCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCCcccCcccCCCccCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHh
Q 041813 304 PLIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAK 382 (543)
Q Consensus 304 p~I~NP~YkG~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~ 382 (543)
|||+||+|+|+|+||+|+||+||++.+| .+.+|+|||||||||+++|+|||||||+|+++|+.+++.||.+|..++++.
T Consensus 360 pmI~NP~y~G~W~PRkI~NPdyfEd~~p~~~~pIsavglElWsMs~~IlfdNi~i~~~~e~a~~~~~~tw~~K~~~~~e~ 439 (558)
T KOG0675|consen 360 PMIDNPNYQGIWKPRKIPNPDYFEDDKPFTLTPISAVGLELWSMSSNILFDNIIITKDIEVAEDIANFTWLLKAAAEREK 439 (558)
T ss_pred ccccCccccCccccccCCCcccccccCcccccchhhhhhhhhhcCCCceeceeEEeccHHHHHHhhhhceeeehhhcccc
Confidence 9999999999999999999999999999 899999999999999999999999999999999999999999996655333
Q ss_pred hHHhhhhhcCCcchhhhhhhhhhhhhhhcchhhHhhhhhhhHhHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 041813 383 HKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAYKSKIIEVLKRGEEQPNITVGILFSIFFIILTIVVTTLSGGKEK 462 (543)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (543)
. . . .+.+++++.+|++|..+++.+++.+. .+..||+++++.
T Consensus 440 ~-~----------------------------------~---~~~~~~~~~~~~~w~~~i~~~~~~v~-~i~~~c~~~k~k 480 (558)
T KOG0675|consen 440 P-F----------------------------------V---QQVMEAAEGHPWLWAIYILTLLLPVA-DITKFCAPVKSK 480 (558)
T ss_pred h-H----------------------------------H---HHHHhhccccchHHHHHHHHhhhhHh-hhhhcccccccc
Confidence 1 0 0 26677777888888777777766543 444556555544
Q ss_pred Ch
Q 041813 463 PP 464 (543)
Q Consensus 463 ~~ 464 (543)
..
T Consensus 481 ~~ 482 (558)
T KOG0675|consen 481 IS 482 (558)
T ss_pred hh
Confidence 33
No 2
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=100.00 E-value=5.9e-144 Score=1110.98 Aligned_cols=351 Identities=57% Similarity=1.137 Sum_probs=263.8
Q ss_pred CccccCCCC--CCCCceeccCC------CCcceEEEcCCC----CCCCcceeeccccchhHHhhhcccccccCCCcEEEE
Q 041813 1 IFYEPFDDP--FDGRWVVSEND------DYKGVWKHSKSE----GHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQ 68 (543)
Q Consensus 1 ~F~E~Fd~~--w~~rWv~S~~~------~y~G~W~~~~~~----~~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQ 68 (543)
+|+|+|+++ |.+|||+|+++ +|.|+|+++++. ..+|+||||+++|||||||++|++||++++|+||||
T Consensus 2 ~F~E~F~~~~~~~~rWv~S~~~k~~~~~~y~G~W~~~~~~~~~~~~~DkGLv~~~~ak~yaIS~kl~kPf~~~~k~LVvQ 81 (367)
T PF00262_consen 2 YFFETFDDGDDWKSRWVQSEAKKDDEIAKYDGKWELEAGKWYPGFEGDKGLVTKSDAKHYAISAKLDKPFSNKDKDLVVQ 81 (367)
T ss_dssp EEEE---SGGGGGGTEEE--SSST--------EEEEEB-SSTSSTTTTBEEEEESSSEEEEEEEEEEEEE-STTS-EEEE
T ss_pred eEeEecCCCCcccCceeeCCCcCcCccccCceEEEEecccccCCCcCceeeEeccchhhhhhhhhCCCccccCCCcEEEE
Confidence 599999874 99999999776 569999999884 278999999999999999999999999999999999
Q ss_pred EEEeeccccccCCceeEeecccCCCCCCC-CCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCCC-C
Q 041813 69 YDVRLQNELECGGAYLKFLQQQSTGWKPQ-EFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSV-P 146 (543)
Q Consensus 69 YEVK~q~gldCGGaYiKLL~~~~~~~~~~-~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~~-~ 146 (543)
||||||++|+|||||||||+. ..++. +|+++|||+||||||+||.+++|||||||+||+|++++|+||++++.. .
T Consensus 82 YeVK~q~~idCGGaYIKLL~~---~~~~~~~f~~~TpY~IMFGPD~CG~~~kvHfI~~~~nP~~~~~~e~~l~~~p~~~~ 158 (367)
T PF00262_consen 82 YEVKFQQGIDCGGAYIKLLPA---SFDQEENFSDKTPYSIMFGPDKCGSSNKVHFIFRHKNPITGEIEEKHLKKPPISCF 158 (367)
T ss_dssp EEEEETT--SEEE--EEEEBT---TSSGGGG-STTS-ESEEEEEEEESTTEEEEEEEEEE-TTTEETTEEEE-SSSSB-H
T ss_pred EEEEeecceeccceEEEEecC---ccchhhhcCCCCCceEEeCCccCCCCceEEEEEEecCCCCCcccceecccCCcccc
Confidence 999999999999999999984 34555 999999999999999999999999999999999999999999999984 5
Q ss_pred CCCCcceEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCC
Q 041813 147 SDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDS 226 (543)
Q Consensus 147 ~DklTHLYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE~~ 226 (543)
.|++||||||||+|||||||+|||+++++|||+ +||+|||+||++|+||+|+||+|||||++|+||+|+||+||||++
T Consensus 159 ~D~~tHlYTLii~~dntyeI~IDg~~~~~G~L~--~df~Pp~~ppk~I~Dp~d~KP~DW~d~~~I~Dp~~~KPedWdE~~ 236 (367)
T PF00262_consen 159 TDKLTHLYTLIIRPDNTYEIRIDGEVVKSGSLL--EDFDPPFNPPKEIDDPNDKKPEDWDDREKIPDPNAKKPEDWDEDE 236 (367)
T ss_dssp HSSSEEEEEEEEETTTEEEEEETTEEEEEEEHH--HHSE--ESS-SCEE-TTT--TTT-TTTSEEC-SSTT--TTTSSS-
T ss_pred cCCCcceEEEEEcCCCeEEEEECCEEeeccccc--cccccCcCChhcccCccccCCcchhhhcccCCccccCcccccccC
Confidence 899999999999999999999999999999999 789999999999999999999999999999999999999999999
Q ss_pred CCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCcc
Q 041813 227 PAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLI 306 (543)
Q Consensus 227 P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I 306 (543)
|++|+||+|+||++|+||||++|+||+|+||+|||+++||+|+||+|+||+|.. +|||+|++|||.||+|||+|+||||
T Consensus 237 p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~w~~p~i~Np~YkG~W~pp~I 315 (367)
T PF00262_consen 237 PEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGEWKPPMIKNPNYKGKWKPPMI 315 (367)
T ss_dssp -SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS----EEE-TT--SS----EE
T ss_pred cccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccccccccccCccccCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred CCCCCCCCCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEe
Q 041813 307 ENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILI 357 (543)
Q Consensus 307 ~NP~YkG~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I 357 (543)
+||+|||+|+||+|+||+||+|.+| .+.+|++||||||||++|++||||||
T Consensus 316 ~NP~YkG~W~p~~I~NP~y~~d~~p~~~~~i~~ig~ElW~~~~~~~FDNi~i 367 (367)
T PF00262_consen 316 PNPNYKGEWKPRKIPNPDYFEDPNPYNFEPIGAIGFELWQMSSGIIFDNILI 367 (367)
T ss_dssp E-TT---S----EEE-TT--SSTTTT--S-EEEEEEEEEESSS-EEEEEEEE
T ss_pred CCccccccccccccCCCcccCCCCccccCceeEEEEEEEeccCCceeeeEEC
Confidence 9999999999999999999999999 78999999999999999999999998
No 3
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-109 Score=835.95 Aligned_cols=329 Identities=42% Similarity=0.824 Sum_probs=306.9
Q ss_pred CccccCC--CCCCCCceeccCCC-CcceEEEcCCCC----CCCcceeeccccchhHHhhhcccccccCCCcEEEEEEEee
Q 041813 1 IFYEPFD--DPFDGRWVVSENDD-YKGVWKHSKSEG----HDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRL 73 (543)
Q Consensus 1 ~F~E~Fd--~~w~~rWv~S~~~~-y~G~W~~~~~~~----~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQYEVK~ 73 (543)
+|.|.|. ++|+.||+.|++++ ..|.|.++.+.. ..|+||++++++||||||++|+ +|+|++|||||||+|||
T Consensus 22 yf~E~F~d~~~w~~rwv~skhk~~~fG~f~ls~g~f~g~~~~DkGiqTsqd~rfya~sa~F~-~FsnK~kTLv~q~tVkh 100 (406)
T KOG0674|consen 22 YFKEEFLDEDGWENRWVQSKHKSRDFGKFVLSAGKFYGDEEKDKGIQTSQDARFYAISAKFK-PFSNKGKTLVIQFTVKH 100 (406)
T ss_pred hhhhhhcCCCCceEEEEEeeccccccCceEeccccccCcccccccccccccceeeeeecccc-cccccCceEEEEEEecc
Confidence 6899994 57999999999987 889999998864 4699999999999999999996 79999999999999999
Q ss_pred ccccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCC-CCeEEEEEecCCCCCCcccccccCCCCCCCCCCCcc
Q 041813 74 QNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGN-TNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSH 152 (543)
Q Consensus 74 q~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~-tnkvHfIf~~knp~tg~~ee~~lk~pp~~~~DklTH 152 (543)
+|+|+|||||||||+ .++|+.+|+++|||.||||||+||. |+|||+||+|++. +|.+++.++|++|.+||
T Consensus 101 eQ~~dcgggyiKl~~---~d~Dq~~f~ges~y~iMfGPDICG~~tkKVhvil~ykg~------nhlikK~i~Ck~D~~tH 171 (406)
T KOG0674|consen 101 EQKIDCGGGYIKLFP---ADLDQTDFHGESPYNIMFGPDICGFGTKKVHVILNYKGK------NHLIKKDIRCKDDELTH 171 (406)
T ss_pred cccccCCceeEEeee---cccchhhcCCCcccccccCCcccCCCCceEEEEEecccc------cchhccccccccCCcce
Confidence 999999999999997 5689999999999999999999998 8999999999863 58899999999999999
Q ss_pred eEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccCC
Q 041813 153 VYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIED 232 (543)
Q Consensus 153 LYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE~~P~~I~D 232 (543)
|||||||||+||+|+|||+.+.+|||. .||+ |+||+.|.||.++||+|||+|++|+||+++||+||+
T Consensus 172 lYTlIlRPd~TYeVkIDn~~~esGsle--~DWd--ll~~KKikdP~a~KPedWDer~~I~DpeD~Kp~dwe--------- 238 (406)
T KOG0674|consen 172 LYTLILRPDATYEVKIDNQQVESGSLE--DDWD--LLPPKKIKDPDAKKPEDWDEREYIPDPEDKKPQDWE--------- 238 (406)
T ss_pred eEEEEecCCCeeEEEEcccccccCccc--cccc--cccccccCCccccCcccchhhccCCCccccCccccc---------
Confidence 999999999999999999999999999 6666 899999999999999999999999999999999985
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCC
Q 041813 233 DEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYN 312 (543)
Q Consensus 233 p~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~Yk 312 (543)
.|++||||+|+||+|||+++||+|++ |||+||.|+|.|+|..|+||+||
T Consensus 239 ------------~pehipDpdakKpedWddemDGEWe~-------------------P~i~nPey~gewkPkqi~np~yK 287 (406)
T KOG0674|consen 239 ------------KPEHIPDPDAKKPEDWDDEMDGEWEA-------------------PMIPNPEYKGEWKPKQIKNPAYK 287 (406)
T ss_pred ------------cccccCCcccCCcccccccccCCcCC-------------------CCCCCccccCccCcccccCcccc
Confidence 57889999999999999999988777 57788899999999999999999
Q ss_pred CCCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHhh
Q 041813 313 GIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKH 383 (543)
Q Consensus 313 G~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~~ 383 (543)
|.|..++|.||+|..+... .|.+|++||||||||+||+||||||||+|+++|+++|++||+..+..|++..
T Consensus 288 g~w~hp~i~npey~~d~~ly~~~ni~~lgldLWQVKSgtIFDN~LitdD~eyA~k~~~eTwg~~k~~ek~~~ 359 (406)
T KOG0674|consen 288 GKWIHPEIDNPEYPDDPELYHYENIGVLGLDLWQVKSGTIFDNFLITDDEEYAEKFANETWGKTKDAEKEMK 359 (406)
T ss_pred ceeeccccCCCcCCCCcceeeecccceeeeeEEEeecceeecceEecCCHHHHHHHHHhhhcccccHHHHhh
Confidence 9999999999999987766 8999999999999999999999999999999999999999998888887653
No 4
>KOG0675 consensus Calnexin [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.6e-34 Score=303.97 Aligned_cols=246 Identities=34% Similarity=0.484 Sum_probs=183.6
Q ss_pred CCCCCCCCCCCCCCCCccccC--CCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCC
Q 041813 189 IPTKMIPDPDDKKPEDWDERA--KIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDG 266 (543)
Q Consensus 189 ~Ppk~I~DP~d~KP~DWdd~~--~IpDP~a~KPeDWDE~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dG 266 (543)
.-...|+||++.||+|||+++ +|||++|+||++|.|++|.+|+||+|.||+||++++...+..|...+|.|=...+||
T Consensus 262 Der~kIpDpnAvKPdDWDE~~P~~Ipd~davkP~~Wledep~~I~DP~A~KPedWdee~dGeWeap~I~NP~C~~~~GCG 341 (558)
T KOG0675|consen 262 DERAKIPDPNAVKPDDWDEDAPLSIPDEDAVKPEGWLEDEPEYIPDPEAQKPEDWDEEEDGEWEAPMIINPKCKEASGCG 341 (558)
T ss_pred hhhhcCCCcccCCccccCcCCCccCCCccccCCccccccCCcccCCcccCCCCCCCccccCccccccccCchhhcCCCCC
Confidence 457899999999999999986 799999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCC---ccCCC----CCccccee
Q 041813 267 EWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYF---EVAEP----NFEPISAV 339 (543)
Q Consensus 267 eW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~WkPr~I~NP~Y~---ed~~p----~~~~i~~i 339 (543)
+|.+|||.||++ .|+|.+|||.||+|+|+|+||.|+||+|...-+|- +-+|-|- |.++- -|.+|
T Consensus 342 ~wk~p~I~NP~Y-----KGkw~~pmI~NP~y~G~W~PRkI~NPdyfEd~~p~-~~~pIsavglElWsMs~~IlfdNi--- 412 (558)
T KOG0675|consen 342 EWKPPMINNPNY-----KGKWILPMIDNPNYQGIWKPRKIPNPDYFEDDKPF-TLTPISAVGLELWSMSSNILFDNI--- 412 (558)
T ss_pred cccCcccCCCcc-----CCCCccccccCccccCccccccCCCcccccccCcc-cccchhhhhhhhhhcCCCceecee---
Confidence 999999999998 89999999999999999999999999999998886 4456553 33322 12222
Q ss_pred eEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHhhHHhhhhhcCCcchhhhhhhhhhhhhhhcchhhHhhh
Q 041813 340 GIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKHKAEKAVAASSDSFTRIRKGLFGLLYKIADIPFLNAY 419 (543)
Q Consensus 340 G~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 419 (543)
++-++|=|+.+... .-|.=+ +...+..--..+..+.+ ..-...+...++.++..++++.++..+
T Consensus 413 ----------~i~~~~e~a~~~~~-~tw~~K-~~~~~e~~~~~~~~~~~----~~~~~~w~~~i~~~~~~v~~i~~~c~~ 476 (558)
T KOG0675|consen 413 ----------IITKDIEVAEDIAN-FTWLLK-AAAEREKPFVQQVMEAA----EGHPWLWAIYILTLLLPVADITKFCAP 476 (558)
T ss_pred ----------EEeccHHHHHHhhh-hceeee-hhhcccchHHHHHHhhc----cccchHHHHHHHHhhhhHhhhhhcccc
Confidence 33455555554432 111111 11111111111111111 112234666788889999988888888
Q ss_pred -hhhhHhHHHhhh-cCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q 041813 420 -KSKIIEVLKRGE-EQPNITVGILFSIFFIILTIVVTTLSGGK 460 (543)
Q Consensus 420 -~~~~~~~~~a~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (543)
+.++.+.+++.. .||.+.+++.+.++.. ...++.+.++|+
T Consensus 477 ~k~k~~~~~~ktd~~qP~~~~~~~~~~~~~-~~~~~~~~~~~~ 518 (558)
T KOG0675|consen 477 VKSKISDAIEKTDDEQPNLKIGLEAEIKED-ESDMFKLEFSGS 518 (558)
T ss_pred cccchhhHHhhccccCCCcccchhhhhhhh-hhhhhccccCCc
Confidence 776777777555 9999999998877654 444544444444
No 5
>PF00262 Calreticulin: Calreticulin family; InterPro: IPR001580 Synonym(s): Calregulin, CRP55, HACBP Calreticulin [] is a high-capacity calcium-binding protein which is present in most tissues and located at the periphery of the endoplasmic (ER) and the sarcoplamic reticulum (SR) membranes. It probably plays a role in the storage of calcium in the lumen of the ER and SR and it may well have other important functions. Structurally, calreticulin is a protein of about 400 amino acid residues consisting of three domains: An N-terminal, probably globular, domain of about 180 amino acid residues (N-domain). A central domain of about 70 residues (P-domain) which contains three repeats of an acidic 17 amino acid motif. This region binds calcium with a low-capacity, but a high-affinity. A C-terminal domain rich in acidic residues and in lysine (C-domain). This region binds calcium with a high-capacity but a low-affinity. Calreticulin is evolutionarily related to several other calcium-binding proteins, including Onchocerca volvulus antigen RAL-1, calnexin [] and calmegin [].; GO: 0005509 calcium ion binding; PDB: 3POS_C 3DOW_B 3POW_A 1HHN_A 1K9C_A 1K91_A 3O0X_B 3O0W_A 3RG0_A 3O0V_A ....
Probab=99.98 E-value=3.1e-34 Score=297.16 Aligned_cols=123 Identities=49% Similarity=0.895 Sum_probs=71.1
Q ss_pred CCCCCCCCCCCCCCCcccc--CCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCc
Q 041813 190 PTKMIPDPDDKKPEDWDER--AKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGE 267 (543)
Q Consensus 190 Ppk~I~DP~d~KP~DWdd~--~~IpDP~a~KPeDWDE~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGe 267 (543)
-.++|+||+|+||+|||+. ++|+||+|+||++|+|++|.+|+||+|+||+||+|++...+.-|...+|.|.. .+||+
T Consensus 217 d~~~I~Dp~~~KPedWdE~~p~~I~D~~a~kP~~W~edep~~IpDp~a~kP~dWdde~dGeWe~P~I~NP~C~~-~gCG~ 295 (367)
T PF00262_consen 217 DREKIPDPNAKKPEDWDEDEPEFIPDPDAVKPEGWLEDEPEYIPDPEAKKPEDWDDEEDGEWEAPMIPNPKCKE-PGCGE 295 (367)
T ss_dssp TTSEEC-SSTT--TTTSSS--SEEE-TT----SS-BSSS-SEEE-TT--S-TT--CCCCSS----EEE-CGGTT-S-BSS
T ss_pred hhcccCCccccCcccccccCcccccCccccCCcchhhCCCcccCCCCCCCCCCCCccccCCccCCccCCCcccC-CCccc
Confidence 4789999999999999964 58999999999999999999999999999999999999999999999999999 89999
Q ss_pred ccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCCCCCCCC
Q 041813 268 WEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPR 318 (543)
Q Consensus 268 W~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~WkPr 318 (543)
|.+|+|.||+| .|+|++|||.||+|||+|+|++|+||+|..+-.|.
T Consensus 296 w~~p~i~Np~Y-----kG~W~pp~I~NP~YkG~W~p~~I~NP~y~~d~~p~ 341 (367)
T PF00262_consen 296 WKPPMIKNPNY-----KGKWKPPMIPNPNYKGEWKPRKIPNPDYFEDPNPY 341 (367)
T ss_dssp ----EEE-TT-------SS----EEE-TT---S----EEE-TT--SSTTTT
T ss_pred cccccccCccc-----cCCccccccCCccccccccccccCCCcccCCCCcc
Confidence 99999999998 79999999999999999999999999999876665
No 6
>KOG0674 consensus Calreticulin [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=9e-22 Score=200.34 Aligned_cols=248 Identities=27% Similarity=0.464 Sum_probs=161.2
Q ss_pred hhcccccccCCCcEEEEEEEeeccccccCCceeEeecccCCCCCCCC----C--CCCCCceEeecCCC----CCCCCeEE
Q 041813 52 KELNENLNIKSQKVILQYDVRLQNELECGGAYLKFLQQQSTGWKPQE----F--DNNSPYSIMFGPDK----CGNTNKVH 121 (543)
Q Consensus 52 a~l~kp~~~k~k~LVvQYEVK~q~gldCGGaYiKLL~~~~~~~~~~~----f--~~~TpY~IMFGPDk----CG~tnkvH 121 (543)
-.|..-|+..+..++-+..+++.+. |+|+|+++...- +..++ + +.+.-|.+||+==+ -|.|--++
T Consensus 21 Vyf~E~F~d~~~w~~rwv~skhk~~--~fG~f~ls~g~f---~g~~~~DkGiqTsqd~rfya~sa~F~~FsnK~kTLv~q 95 (406)
T KOG0674|consen 21 VYFKEEFLDEDGWENRWVQSKHKSR--DFGKFVLSAGKF---YGDEEKDKGIQTSQDARFYAISAKFKPFSNKGKTLVIQ 95 (406)
T ss_pred hhhhhhhcCCCCceEEEEEeecccc--ccCceEeccccc---cCcccccccccccccceeeeeecccccccccCceEEEE
Confidence 4677888888999999999999887 999999887642 22221 2 23335778865211 12233466
Q ss_pred EEEecCCCC-------------------CCcccccccCCCCCCCC-CCCcceEEEEEeCCCceEE-------EeCCeEee
Q 041813 122 FIFKHKNPK-------------------SGEYVEHHLKDPPSVPS-DKFSHVYTAVLQPDNILQI-------LIDGKEEK 174 (543)
Q Consensus 122 fIf~~knp~-------------------tg~~ee~~lk~pp~~~~-DklTHLYTLIl~pdntyeI-------~IDg~~~~ 174 (543)
|-++|-... +|+-.-.-|..|..|.. -+..| .|++=++.+-. ..|+-...
T Consensus 96 ~tVkheQ~~dcgggyiKl~~~d~Dq~~f~ges~y~iMfGPDICG~~tkKVh---vil~ykg~nhlikK~i~Ck~D~~tHl 172 (406)
T KOG0674|consen 96 FTVKHEQKIDCGGGYIKLFPADLDQTDFHGESPYNIMFGPDICGFGTKKVH---VILNYKGKNHLIKKDIRCKDDELTHL 172 (406)
T ss_pred EEecccccccCCceeEEeeecccchhhcCCCcccccccCCcccCCCCceEE---EEEecccccchhccccccccCCccee
Confidence 666664322 12211122233333332 23333 23322222110 00111111
Q ss_pred ccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCC---CCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCC
Q 041813 175 KTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPD---PEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIED 251 (543)
Q Consensus 175 ~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpD---P~a~KPeDWDE~~P~~I~Dp~a~KPedW~ddep~~IpD 251 (543)
.. .|-.|+..- +-.|.. .+..--+|||...|..|.||.|.||+|| |+.++|+|
T Consensus 173 YT----------------lIlRPd~TY------eVkIDn~~~esGsle~DWdll~~KKikdP~a~KPedW--Der~~I~D 228 (406)
T KOG0674|consen 173 YT----------------LILRPDATY------EVKIDNQQVESGSLEDDWDLLPPKKIKDPDAKKPEDW--DEREYIPD 228 (406)
T ss_pred EE----------------EEecCCCee------EEEEcccccccCccccccccccccccCCccccCcccc--hhhccCCC
Confidence 11 111121111 012222 2466788999999999999999999999 46799999
Q ss_pred CCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCC-----
Q 041813 252 PEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYF----- 326 (543)
Q Consensus 252 P~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~WkPr~I~NP~Y~----- 326 (543)
|+.+||++|+.. -.|++|.. ++|.-++-...|+|.||||+||.|+|+|+|++|.||+|.
T Consensus 229 peD~Kp~dwe~p-------ehipDpda---------kKpedWddemDGEWe~P~i~nPey~gewkPkqi~np~yKg~w~h 292 (406)
T KOG0674|consen 229 PEDKKPQDWEKP-------EHIPDPDA---------KKPEDWDDEMDGEWEAPMIPNPEYKGEWKPKQIKNPAYKGKWIH 292 (406)
T ss_pred ccccCccccccc-------cccCCccc---------CCcccccccccCCcCCCCCCCccccCccCcccccCccccceeec
Confidence 999999999943 36777776 667788999999999999999999999999999999998
Q ss_pred -ccCCCCCcccceeeEEEeeecCCceEeeEEe
Q 041813 327 -EVAEPNFEPISAVGIEIWTMQDGILFDNILI 357 (543)
Q Consensus 327 -ed~~p~~~~i~~iG~ElW~~~~gilFDNI~I 357 (543)
++.+|.|.+...| ..|.||-+
T Consensus 293 p~i~npey~~d~~l----------y~~~ni~~ 314 (406)
T KOG0674|consen 293 PEIDNPEYPDDPEL----------YHYENIGV 314 (406)
T ss_pred cccCCCcCCCCcce----------eeecccce
Confidence 4567788887777 78888854
No 7
>PF07423 DUF1510: Protein of unknown function (DUF1510); InterPro: IPR009988 This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=69.86 E-value=4.4 Score=40.93 Aligned_cols=22 Identities=23% Similarity=0.252 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 041813 437 TVGILFSIFFIILTIVVTTLSG 458 (543)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~ 458 (543)
++.++++||+|||+++..++|.
T Consensus 15 iLNiaI~IV~lLIiiva~~lf~ 36 (217)
T PF07423_consen 15 ILNIAIGIVSLLIIIVAYQLFF 36 (217)
T ss_pred hHHHHHHHHHHHHHHHhhhhee
Confidence 3333444433333333333333
No 8
>PRK10404 hypothetical protein; Provisional
Probab=65.77 E-value=11 Score=33.81 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=22.4
Q ss_pred hhhhhHhHHHhhhcCCchHHHHHHHHHHH
Q 041813 419 YKSKIIEVLKRGEEQPNITVGILFSIFFI 447 (543)
Q Consensus 419 ~~~~~~~~~~a~~~~p~~~~~~~~~~~~~ 447 (543)
++......-+.+.++||-++|+++++.++
T Consensus 65 ~k~aa~~td~yV~e~Pw~avGiaagvGll 93 (101)
T PRK10404 65 AKQAVYRADDYVHEKPWQGIGVGAAVGLV 93 (101)
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 45445567788999999999998887754
No 9
>PF06439 DUF1080: Domain of Unknown Function (DUF1080); InterPro: IPR010496 This is a family of proteins of unknown function.; PDB: 3IMM_B 3NMB_A 3S5Q_A 3OSD_A 3HBK_A 3H3L_A 3U1X_A.
Probab=59.42 E-value=1.4e+02 Score=27.31 Aligned_cols=144 Identities=14% Similarity=0.201 Sum_probs=67.1
Q ss_pred ccCCCCCCCCceeccCCCCcceEEEcCCCCCCCccee---eccccchhHHhhhcccccccCCCcEEEEEEEeeccccccC
Q 041813 4 EPFDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLL---VSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECG 80 (543)
Q Consensus 4 E~Fd~~w~~rWv~S~~~~y~G~W~~~~~~~~~DkGLv---~~~~ak~yaISa~l~kp~~~k~k~LVvQYEVK~q~gldCG 80 (543)
.=|+..-.+.|.........+.|.++.+. |+ .......+.++. +.+ ++++|+.++|+..+- .+
T Consensus 4 ~lf~g~~l~gW~~~~~~~~~~~~~v~dG~------l~~~~~~~~~~~~l~~~---~~~----~df~l~~d~k~~~~~-~s 69 (185)
T PF06439_consen 4 SLFNGKDLDGWKIYGGGWFEGGWSVKDGV------LVSNGSSGSGGGYLYTD---KKF----SDFELEVDFKITPGG-NS 69 (185)
T ss_dssp ESS-SSCGTTEEETTSSSETTTEEEETTE------EE-GGGGESSS--EEES---SEB----SSEEEEEEEEE-TT--EE
T ss_pred EeECCCCHHHCeeCCCCccccCcEeeCCE------EEecccCCCCcceEEEC---Ccc----ccEEEEEEEEECCCC-Ce
Confidence 34664445789888766556788777542 22 111111122221 122 468888888873322 33
Q ss_pred CceeEeecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccc---cccC-CCCCCCCCCCcceEEE
Q 041813 81 GAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVE---HHLK-DPPSVPSDKFSHVYTA 156 (543)
Q Consensus 81 GaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee---~~lk-~pp~~~~DklTHLYTL 156 (543)
|=|+..-+ .........-|.+-..++.++ ....-.+|.... .... .........--|=|++
T Consensus 70 Gi~~r~~~------~~~~~~~~~gy~~~i~~~~~~---------~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~W~~~~I 134 (185)
T PF06439_consen 70 GIFFRAQS------PGDGQDWNNGYEFQIDNSGGG---------TGLPNSTGSLYDEPPWQLEPSVNVAIPPGEWNTVRI 134 (185)
T ss_dssp EEEEEESS------ECCSSGGGTSEEEEEE-TTTC---------STTTTSTTSBTTTB-TCB-SSS--S--TTSEEEEEE
T ss_pred EEEEEecc------ccCCCCcceEEEEEEECCCCc---------cCCCCccceEEEeccccccccccccCCCCceEEEEE
Confidence 33333220 011222333477777777776 112223444321 0111 1111111223333444
Q ss_pred EEeCCCceEEEeCCeEeeccc
Q 041813 157 VLQPDNILQILIDGKEEKKTY 177 (543)
Q Consensus 157 Il~pdntyeI~IDg~~~~~Gs 177 (543)
++ -.+++.+.|||+.+..-.
T Consensus 135 ~~-~g~~i~v~vnG~~v~~~~ 154 (185)
T PF06439_consen 135 VV-KGNRITVWVNGKPVADFT 154 (185)
T ss_dssp EE-ETTEEEEEETTEEEEEEE
T ss_pred EE-ECCEEEEEECCEEEEEEE
Confidence 44 478999999999886654
No 10
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=59.40 E-value=10 Score=34.66 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=18.8
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHH
Q 041813 425 EVLKRGEEQPNITVGILFSIFFII 448 (543)
Q Consensus 425 ~~~~a~~~~p~~~~~~~~~~~~~~ 448 (543)
.-=+.+.++||-.||+.++|.++|
T Consensus 74 ~tD~yV~e~PWq~VGvaAaVGlll 97 (104)
T COG4575 74 ATDDYVRENPWQGVGVAAAVGLLL 97 (104)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHH
Confidence 444567899999999999888643
No 11
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=57.74 E-value=17 Score=31.38 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=21.3
Q ss_pred hhhhHhHHHhhhcCCchHHHHHHHHHHH
Q 041813 420 KSKIIEVLKRGEEQPNITVGILFSIFFI 447 (543)
Q Consensus 420 ~~~~~~~~~a~~~~p~~~~~~~~~~~~~ 447 (543)
+......-+.++++||-++|+.+++.++
T Consensus 59 ~~~~~~~~~~V~e~P~~svgiAagvG~l 86 (94)
T PF05957_consen 59 REAAEQTEDYVRENPWQSVGIAAGVGFL 86 (94)
T ss_pred HHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 3334567778999999999988887754
No 12
>PRK10132 hypothetical protein; Provisional
Probab=54.68 E-value=19 Score=32.72 Aligned_cols=25 Identities=20% Similarity=0.042 Sum_probs=19.0
Q ss_pred HhHHHhhhcCCchHHHHHHHHHHHH
Q 041813 424 IEVLKRGEEQPNITVGILFSIFFII 448 (543)
Q Consensus 424 ~~~~~a~~~~p~~~~~~~~~~~~~~ 448 (543)
...-+.+.++||.++|+++++.+++
T Consensus 76 ~~~~~~V~~~Pw~svgiaagvG~ll 100 (108)
T PRK10132 76 GCADTFVRERPWCSVGTAAAVGIFI 100 (108)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3455678889999999988877543
No 13
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=46.45 E-value=17 Score=35.31 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=18.4
Q ss_pred HHHHHhcCCCCCChhccccceeccccCcc
Q 041813 451 IVVTTLSGGKEKPPVCLQSKLIYFVGPRH 479 (543)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 479 (543)
+++.+|.+.|+++.++.+---+-|.-|-.
T Consensus 47 vli~lcssRKkKaaAAi~eediQfinpyq 75 (189)
T PF05568_consen 47 VLIYLCSSRKKKAAAAIEEEDIQFINPYQ 75 (189)
T ss_pred HHHHHHhhhhHHHHhhhhhhcccccCccc
Confidence 34455655677777777766777766543
No 14
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length. Members of this family appear to be Actinomycete specific. The function of this family is unknown.
Probab=46.30 E-value=24 Score=31.24 Aligned_cols=28 Identities=21% Similarity=0.507 Sum_probs=24.7
Q ss_pred CCcEEEEEEEeeccccccCCceeEeeccc
Q 041813 62 SQKVILQYDVRLQNELECGGAYLKFLQQQ 90 (543)
Q Consensus 62 ~k~LVvQYEVK~q~gldCGGaYiKLL~~~ 90 (543)
.|..|||=.|+ ..|---||||+.||...
T Consensus 5 ~ke~VItG~V~-~~G~Pv~gAyVRLLD~s 32 (85)
T PF07210_consen 5 EKETVITGRVT-RDGEPVGGAYVRLLDSS 32 (85)
T ss_pred cceEEEEEEEe-cCCcCCCCeEEEEEcCC
Confidence 47799999999 88999999999999753
No 15
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=41.49 E-value=57 Score=25.17 Aligned_cols=33 Identities=12% Similarity=0.352 Sum_probs=22.5
Q ss_pred HhHHHhhhcCCchHHHHHHHHHHHHHHHHHHHh
Q 041813 424 IEVLKRGEEQPNITVGILFSIFFIILTIVVTTL 456 (543)
Q Consensus 424 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~ 456 (543)
.+....+..++...+|+++.+++++++++.-++
T Consensus 6 ~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 6 KDAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 366777888999888877766665555554444
No 16
>PF15069 FAM163: FAM163 family
Probab=39.43 E-value=33 Score=32.95 Aligned_cols=19 Identities=32% Similarity=0.543 Sum_probs=11.9
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 041813 436 ITVGILFSIFFIILTIVVT 454 (543)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~~ 454 (543)
+++|+||+|+|+.|++|+.
T Consensus 8 ItGgILAtVILLcIIaVLC 26 (143)
T PF15069_consen 8 ITGGILATVILLCIIAVLC 26 (143)
T ss_pred EechHHHHHHHHHHHHHHH
Confidence 4678888887655544433
No 17
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=33.75 E-value=43 Score=32.81 Aligned_cols=23 Identities=13% Similarity=0.296 Sum_probs=13.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHh
Q 041813 434 PNITVGILFSIFFIILTIVVTTL 456 (543)
Q Consensus 434 p~~~~~~~~~~~~~~~~~~~~~~ 456 (543)
+-++.||+.+|++.|++.+.+++
T Consensus 114 ~g~IaGIvsav~valvGAvsSyi 136 (169)
T PF12301_consen 114 AGTIAGIVSAVVVALVGAVSSYI 136 (169)
T ss_pred cchhhhHHHHHHHHHHHHHHHHH
Confidence 44555666656555555555555
No 18
>PHA02513 V1 structural protein V1; Reviewed
Probab=33.29 E-value=69 Score=30.02 Aligned_cols=29 Identities=14% Similarity=0.369 Sum_probs=24.5
Q ss_pred hhhhhhcchhhHhhhhhhhHhHHHhhhcCCchH
Q 041813 405 GLLYKIADIPFLNAYKSKIIEVLKRGEEQPNIT 437 (543)
Q Consensus 405 ~~~~~~~~~~f~~~~~~~~~~~~~a~~~~p~~~ 437 (543)
.++++..|...++-++ .++|-++.+|-++
T Consensus 32 kif~qtwdgnii~sa~----~fveva~~npklt 60 (135)
T PHA02513 32 KIFYQTWDGNIISSAR----RFVEVAKANPKLT 60 (135)
T ss_pred HHHHHhcCchHHHHHH----HHHHHHhcCCccc
Confidence 4667788888888777 7999999999987
No 19
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=32.71 E-value=49 Score=25.39 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=5.3
Q ss_pred CchHHHHHHHHH
Q 041813 434 PNITVGILFSIF 445 (543)
Q Consensus 434 p~~~~~~~~~~~ 445 (543)
|..+++++++++
T Consensus 2 p~s~IaIIv~V~ 13 (38)
T PF02439_consen 2 PSSTIAIIVAVV 13 (38)
T ss_pred CcchhhHHHHHH
Confidence 344444444443
No 20
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=31.42 E-value=37 Score=34.67 Aligned_cols=9 Identities=33% Similarity=0.523 Sum_probs=6.7
Q ss_pred eccccCccc
Q 041813 472 IYFVGPRHE 480 (543)
Q Consensus 472 ~~~~~~~~~ 480 (543)
.++++|+.+
T Consensus 80 ~e~~tPn~~ 88 (221)
T PF08374_consen 80 SEWVTPNQE 88 (221)
T ss_pred ccccCCCcc
Confidence 688898654
No 21
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=30.01 E-value=44 Score=34.62 Aligned_cols=12 Identities=17% Similarity=0.493 Sum_probs=5.7
Q ss_pred HHHHHhcCCCCC
Q 041813 451 IVVTTLSGGKEK 462 (543)
Q Consensus 451 ~~~~~~~~~~~~ 462 (543)
+|+.++.|.+++
T Consensus 288 vLiaYli~Rrr~ 299 (306)
T PF01299_consen 288 VLIAYLIGRRRS 299 (306)
T ss_pred HHHhheeEeccc
Confidence 344455555443
No 22
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=29.48 E-value=26 Score=33.40 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 041813 437 TVGILFSIF 445 (543)
Q Consensus 437 ~~~~~~~~~ 445 (543)
++|++++|+
T Consensus 81 ivgvi~~Vi 89 (179)
T PF13908_consen 81 IVGVICGVI 89 (179)
T ss_pred eeehhhHHH
Confidence 344433333
No 23
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=29.20 E-value=86 Score=28.01 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=6.3
Q ss_pred hHHHHHHHHHHH
Q 041813 436 ITVGILFSIFFI 447 (543)
Q Consensus 436 ~~~~~~~~~~~~ 447 (543)
+|+++++.++++
T Consensus 42 FWv~LA~FV~~l 53 (90)
T PF15183_consen 42 FWVSLAAFVVFL 53 (90)
T ss_pred HHHHHHHHHHHH
Confidence 456655555443
No 24
>KOG3285 consensus Spindle assembly checkpoint protein [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=28.98 E-value=24 Score=35.30 Aligned_cols=30 Identities=33% Similarity=0.658 Sum_probs=20.7
Q ss_pred CCCCCCCCCCCCCCCCCccCCCCCCCCCCC
Q 041813 212 PDPEAVKPGDWDEDSPAEIEDDEAVKPEGW 241 (543)
Q Consensus 212 pDP~a~KPeDWDE~~P~~I~Dp~a~KPedW 241 (543)
.|-+..-|++|+|+.|..|.||++++=..+
T Consensus 157 TdkD~~vP~~W~eS~~~~I~n~e~VqlrsF 186 (203)
T KOG3285|consen 157 TDKDTEVPEKWDESGPKLIQNPEAVQLRSF 186 (203)
T ss_pred eCCCccCCcchhcCCCeEecChhhEEEeec
Confidence 355666778888888888888777654433
No 25
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=28.25 E-value=78 Score=26.89 Aligned_cols=21 Identities=5% Similarity=0.420 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q 041813 438 VGILFSIFFIILTIVVTTLSG 458 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~ 458 (543)
++++++++++++++++.+++.
T Consensus 4 ~~~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 4 ASIIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC
T ss_pred ehHHHHHHHHHHhheeEEEEE
Confidence 334444443333333333333
No 26
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=26.06 E-value=19 Score=34.95 Aligned_cols=19 Identities=32% Similarity=0.317 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 041813 438 VGILFSIFFIILTIVVTTL 456 (543)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~ 456 (543)
+|+++.|++++++|||.||
T Consensus 56 VGVGg~ill~il~lvf~~c 74 (154)
T PF04478_consen 56 VGVGGPILLGILALVFIFC 74 (154)
T ss_pred ecccHHHHHHHHHhheeEE
Confidence 3343444433333343343
No 27
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=25.59 E-value=23 Score=29.86 Aligned_cols=12 Identities=0% Similarity=0.133 Sum_probs=0.0
Q ss_pred CCchHHHHHHHH
Q 041813 433 QPNITVGILFSI 444 (543)
Q Consensus 433 ~p~~~~~~~~~~ 444 (543)
+|++.+|+++++
T Consensus 7 ~~~vlaavIaG~ 18 (64)
T PF01034_consen 7 RSEVLAAVIAGG 18 (64)
T ss_dssp ------------
T ss_pred cchHHHHHHHHH
Confidence 566655554443
No 28
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=24.95 E-value=1.1e+02 Score=26.29 Aligned_cols=34 Identities=21% Similarity=0.298 Sum_probs=23.9
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHHHHHHHHhcC
Q 041813 425 EVLKRGEEQPNITVGILFSIFFIILTIVVTTLSG 458 (543)
Q Consensus 425 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 458 (543)
.+++.+.-..|.+||++.+|++.+++.+.-+.|-
T Consensus 23 ~lld~~sp~qW~aIGvi~gi~~~~lt~ltN~YFK 56 (68)
T PF04971_consen 23 QLLDQFSPSQWAAIGVIGGIFFGLLTYLTNLYFK 56 (68)
T ss_pred HHHhccCcccchhHHHHHHHHHHHHHHHhHhhhh
Confidence 5666676677888898888876666666555553
No 29
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=22.21 E-value=1.4e+02 Score=26.69 Aligned_cols=16 Identities=38% Similarity=0.638 Sum_probs=10.7
Q ss_pred CCchHHHHHHHHHHHH
Q 041813 433 QPNITVGILFSIFFII 448 (543)
Q Consensus 433 ~p~~~~~~~~~~~~~~ 448 (543)
.|.....+++++|+++
T Consensus 23 ~pn~lMtILivLVIIi 38 (85)
T PF10717_consen 23 NPNTLMTILIVLVIII 38 (85)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 6787777777666543
No 30
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=20.05 E-value=1.1e+02 Score=26.87 Aligned_cols=26 Identities=31% Similarity=0.373 Sum_probs=22.1
Q ss_pred cceEEEEEeCCCceEEEeCCeEeecc
Q 041813 151 SHVYTAVLQPDNILQILIDGKEEKKT 176 (543)
Q Consensus 151 THLYTLIl~pdntyeI~IDg~~~~~G 176 (543)
+-.||+.+..|+.+++.|||+.+...
T Consensus 59 ~G~y~f~~~~~d~~~l~idg~~vid~ 84 (145)
T PF07691_consen 59 TGTYTFSLTSDDGARLWIDGKLVIDN 84 (145)
T ss_dssp SEEEEEEEEESSEEEEEETTEEEEEC
T ss_pred CceEEEEEEecccEEEEECCEEEEcC
Confidence 45699999999999999999988544
No 31
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.01 E-value=1e+02 Score=28.78 Aligned_cols=8 Identities=0% Similarity=0.127 Sum_probs=3.3
Q ss_pred HHHHHhcC
Q 041813 451 IVVTTLSG 458 (543)
Q Consensus 451 ~~~~~~~~ 458 (543)
||+.||+.
T Consensus 82 lli~y~ir 89 (122)
T PF01102_consen 82 LLISYCIR 89 (122)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 34444444
Done!