Query 041813
Match_columns 543
No_of_seqs 255 out of 742
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 18:44:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041813.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041813hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jhn_A Calnexin; jelly-roll, b 100.0 7E-148 2E-152 1149.6 28.0 379 1-382 27-422 (424)
2 3rg0_A Calreticulin; beta-sand 100.0 5E-117 2E-121 895.2 20.0 302 1-386 8-317 (332)
3 3pow_A Calreticulin; legume le 100.0 6.8E-87 2.3E-91 661.1 17.5 239 1-386 13-258 (265)
4 1hhn_A Calreticulin; molecular 100.0 2.6E-37 9E-42 269.0 6.9 100 191-330 1-100 (101)
5 1jhn_A Calnexin; jelly-roll, b 100.0 6.9E-37 2.3E-41 318.7 10.8 127 203-331 221-356 (424)
6 1hhn_A Calreticulin; molecular 99.9 1.8E-24 6.1E-29 188.5 5.6 87 227-331 1-87 (101)
7 3rg0_A Calreticulin; beta-sand 99.5 9.4E-16 3.2E-20 156.3 1.9 68 216-331 180-247 (332)
8 3ici_C Calnexin, PP90; protein 99.3 4.5E-13 1.5E-17 98.3 3.2 35 243-277 4-38 (38)
9 3ici_C Calnexin, PP90; protein 97.8 1.6E-05 5.6E-10 58.5 3.3 21 205-225 4-24 (38)
10 4b1m_A Levanase; hydrolase, CB 42.2 1.2E+02 0.0043 27.5 9.3 130 6-175 26-156 (185)
11 2knc_B Integrin beta-3; transm 28.6 41 0.0014 27.8 3.2 11 447-457 22-32 (79)
12 2ks1_B Epidermal growth factor 21.9 63 0.0022 24.2 2.8 14 433-446 10-23 (44)
13 2quo_A Heat-labIle enterotoxin 21.4 61 0.0021 28.3 3.0 24 81-110 101-124 (126)
No 1
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=100.00 E-value=6.9e-148 Score=1149.62 Aligned_cols=379 Identities=50% Similarity=1.014 Sum_probs=352.5
Q ss_pred CccccCCCCCCCCceeccCC---------CCcceEEEcCCCC---CCCcceeeccccchhHHhhhcccccccCCCcEEEE
Q 041813 1 IFYEPFDDPFDGRWVVSEND---------DYKGVWKHSKSEG---HDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQ 68 (543)
Q Consensus 1 ~F~E~Fd~~w~~rWv~S~~~---------~y~G~W~~~~~~~---~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQ 68 (543)
+|+|+|+++|.+|||+|+++ +|.|+|+++++.. .+|+||||+++|||||||++|++||+|++|+||||
T Consensus 27 ~F~E~F~~~~~~rWv~S~~~k~~~~~~~~~y~G~w~~~~~~~~~~~~DkGL~~~~~ar~yaISa~~~kpf~~~~k~LVvQ 106 (424)
T 1jhn_A 27 YFADSFDRGTLSGWILSKAKKDDTDDEIAKYDGKWEVDEMKETKLPGDKGLVLMSRAKHHAISAKLNKPFLFDTKPLIVQ 106 (424)
T ss_dssp SSEECCCSSSCCSCCCCCCC-----------CCEEECCBCTTCSSTTCBCCEEECSSCCCEEEEEEEEEECSSSSCEEEE
T ss_pred eEeeecCCCccCCceeCcccccccccccccCCeEEEEecCccCCCccccceeeccchhHHHHHHhhcCccccCCCCEEEE
Confidence 69999999999999999996 5889999998863 68999999999999999999999999999999999
Q ss_pred EEEeeccccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCC----
Q 041813 69 YDVRLQNELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPS---- 144 (543)
Q Consensus 69 YEVK~q~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~---- 144 (543)
||||||++|+|||||||||+.. .++++++|+++|||+||||||+||.++||||||||+||+||+|+|+|+++++.
T Consensus 107 YeVk~q~~idCGGaYiKLl~~~-~~~d~~~f~~~TpY~IMFGPD~CG~~~kvH~I~~~knp~~g~~~ekh~~~~~~~~~~ 185 (424)
T 1jhn_A 107 YEVNFQNGIECGGAYVKLLSKT-PELNLDQFHDKTPYTIMFGPDKCGEDYKLHFIFRHKNPKTGVYEEKHAKRPDADLKT 185 (424)
T ss_dssp EEECCTTCCSEEECCEEEEBCC-SSCCGGGCCSSCCEEEEEEEEEESSCCEEEEEEEEECTTTCCEEEECCCCCSSCCTH
T ss_pred EEEEecccccccceEEEeecCc-ccCCHhHcCCCCCceEeccCCccCCCCeEEEEEecCCCCCCchhhhcccCCcccccc
Confidence 9999999999999999999853 35899999999999999999999999999999999999999999999998874
Q ss_pred CCCCCCcceEEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCC
Q 041813 145 VPSDKFSHVYTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDE 224 (543)
Q Consensus 145 ~~~DklTHLYTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE 224 (543)
|++|++||||||||||||||+|+|||+++.+|||+ +||+|||+||++|+||+|+||+|||++++|+||+|+||+||||
T Consensus 186 ~~~D~~tHlYTLIl~pdntyei~ID~~~v~~GsL~--~D~~Pp~~pp~~I~Dp~~~KP~DWde~~~I~Dp~a~KPeDWde 263 (424)
T 1jhn_A 186 YFTDKKTHLYTLILNPDNSFEILVDQSIVNSGNLL--NDMTPPVNPSREIEDPEDQKPEDWDERPKIPDPDAVKPDDWNE 263 (424)
T ss_dssp HHHSCSCEEEEEEEETTTEEEEEETTEEEEEEC---------CCSSCCCCBCTTCCCCTTCCCCSEEECSSCCCCTTCCS
T ss_pred cccCCCceEEEEEEcCCCcEEEEECCceecccccH--HhccccCCCcccccCccccCccccccccccCCcccCCcccccc
Confidence 35799999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred CCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCC
Q 041813 225 DSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAP 304 (543)
Q Consensus 225 ~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp 304 (543)
++|.+|+||+|+||+||+++||++|+||+++||+||++++||+|++|+|+||+|+.++|||+|++|||.||+|||+|+||
T Consensus 264 ~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPedWd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp 343 (424)
T 1jhn_A 264 DAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPEDWDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPP 343 (424)
T ss_dssp SCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTTCCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCC
T ss_pred CCccccCCccccCCCCccccccccCCCcccCCccccccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHh
Q 041813 305 LIENPNYNGIWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAK 382 (543)
Q Consensus 305 ~I~NP~YkG~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~ 382 (543)
||+||+|+|.|+||+|+||+|++|.+| +|.+|++||||||||++|++|||||||||+++|++++++||+.|+.+|.+.
T Consensus 344 ~I~NP~Ykg~W~p~~I~NP~y~~d~~p~~~~~i~~iG~ElW~~~~g~~FDNilItdd~~~A~~~~~~t~~~k~~~e~~~ 422 (424)
T 1jhn_A 344 MIDNPNYQGIWKPRKIPNPDFFEDLEPFKMTPFSAIGLELWSMTSDIFFDNFIVCGDRRVVDDWANDGWGLKKAADGAA 422 (424)
T ss_dssp EEECTTCCCSCCCCBCCCTTCCCCCCTTCCCCEEEEEECCCCSSSCCBCEEEEEESSSHHHHHHHHHTTTC--------
T ss_pred ccCCCcccccccccccCCccccCCCcccccCcccEEEEEeEEeeCCcEEeeEEEcCCHHHHHHHHHhhhhhhhhhhhhc
Confidence 999999999999999999999999999 899999999999999999999999999999999999999999999888543
No 2
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=100.00 E-value=5.5e-117 Score=895.24 Aligned_cols=302 Identities=37% Similarity=0.731 Sum_probs=260.7
Q ss_pred CccccCCC--CCCCCceeccCCCCcceEEEcCCCC----CCCcceeeccccchhHHhhhcccccccCCCcEEEEEEEeec
Q 041813 1 IFYEPFDD--PFDGRWVVSENDDYKGVWKHSKSEG----HDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQ 74 (543)
Q Consensus 1 ~F~E~Fd~--~w~~rWv~S~~~~y~G~W~~~~~~~----~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQYEVK~q 74 (543)
+|+|+|++ +|++|||+|+++++.|+|+++++.. ++|+||||+++|||||||++| +||+|++|+||||||||||
T Consensus 8 yF~E~F~d~~~w~~rWv~S~~~~~~G~w~~~~g~~~~~~~~DkGL~t~~~ak~yAISakf-~pf~n~~k~LVvQYeVK~e 86 (332)
T 3rg0_A 8 YFKEQFLDGDAWTNRWVESKHKSDFGKFVLSSGKFYGDLEKDKGLQTSQDARFYALSAKF-EPFSNKGQTLVVQFTVKHE 86 (332)
T ss_dssp EEEECCCSGGGGGGTEEECCSSSSCCCEEEECCSSCSSTTTTCEEEECSSSEEEEEEEEE-EEECCTTSCEEEEEEEEET
T ss_pred EEEeecCCCCcccCCceeCCCcccCCeEEeecCcccCCcccccceeecchhhhhhhhccc-CCccCCCCCEEEEEEEEcc
Confidence 59999985 7999999999999999999999853 589999999999999999999 8999999999999999999
Q ss_pred cccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCC-CCeEEEEEecCCCCCCcccccccCCCCCCCCCCCcce
Q 041813 75 NELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGN-TNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHV 153 (543)
Q Consensus 75 ~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~-tnkvHfIf~~knp~tg~~ee~~lk~pp~~~~DklTHL 153 (543)
++|+|||||||||+ +++++++|+++|||+||||||+||. ++||||||+|+|+ +|+++++++|+.|++|||
T Consensus 87 ~~idCGGaYiKLl~---~~~d~~~f~~~TpY~IMFGPD~CG~~~~kvH~I~~~k~~------~h~~kk~i~~~~D~~THL 157 (332)
T 3rg0_A 87 QNIDCGGGYVKLFP---SGLDQKDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK------NVLINKDIRSKDDEFTHL 157 (332)
T ss_dssp TCCSEEECCEEEEC---SSCCGGGCCTTSCCSEEEEEEEETTTEEEEEEEEEETTE------EEECSSCCBCCCSSSEEE
T ss_pred cccccCceEEEeec---CcCCHhhcCCCCcceEEecCcccCCCCCEEEEEEEeCCc------cccccCCCCCCCCCCCce
Confidence 99999999999998 4589999999999999999999998 8999999999985 577788999999999999
Q ss_pred EEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccCCC
Q 041813 154 YTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDD 233 (543)
Q Consensus 154 YTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE~~P~~I~Dp 233 (543)
|||||||||||+|+|||+++.+|||+ +||+ ++||++|+||+|+||+||||+++||||+|+||+|||+
T Consensus 158 YTLIi~pdntyeI~ID~~~v~~GsL~--~Dwd--~~ppk~I~Dp~d~KPedWdd~~~I~DP~a~KPeDWd~--------- 224 (332)
T 3rg0_A 158 YTLIVRPDNTYEVKIDNSQVESGSLE--DDWD--FLPPKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK--------- 224 (332)
T ss_dssp EEEEECTTSEEEEEETTEEEEEEEHH--HHSC--CSCCSEEECTTCCCCTTCCCCCCCC---------------------
T ss_pred EEEEEcCCCeEEEEECCEEEeccccc--CCCC--cCCccccCCcccCCcccCcCcccCCCcccCCcccccc---------
Confidence 99999999999999999999999999 7776 8999999999999999999999999999999999972
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCCC
Q 041813 234 EAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNG 313 (543)
Q Consensus 234 ~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG 313 (543)
|+|||+|+||+|+||+|+|
T Consensus 225 -------------------------------------------------------------p~YkG~Wkp~~I~NP~YkG 243 (332)
T 3rg0_A 225 -------------------------------------------------------------GGSGGEWKPRQIDNPDYKG 243 (332)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred -------------------------------------------------------------ccccccccccccCCCcccC
Confidence 1299999999999999999
Q ss_pred CCCCCcCCCCCCCccCCC-CCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHhhHHh
Q 041813 314 IWKPRQIQNPHYFEVAEP-NFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKHKAE 386 (543)
Q Consensus 314 ~WkPr~I~NP~Y~ed~~p-~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~~~~~ 386 (543)
.|+||+|+||+|++|.+| +|.+|++||||||||++|++|||||||||+++|++++++||++++.+|+++.++.
T Consensus 244 ~W~p~~I~NP~Y~~D~~~~~~~~i~~iG~ElWq~~sg~iFDNilItdd~~~A~~~~~~t~~~~~~~Ek~~~~~~ 317 (332)
T 3rg0_A 244 TWIHPEIDNPEYSPDANIYAYDSFAVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQ 317 (332)
T ss_dssp CCCCCEEECTTCCCCTTTTCCSCEEEEEEEEEESSCCEEEEEEEEESCHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CccCCccCCCCCcCCcchhccccccEEEEEEEeccCCcEEeeEEEcCCHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 999999999999999999 8999999999999999999999999999999999999999999999998776654
No 3
>3pow_A Calreticulin; legume lectin fold, CNX/CRT family, multi-functional, carboh binding, peptide binding, multi-compartmental, chaperone; 1.55A {Homo sapiens} PDB: 3pos_A 3o0w_A* 3o0v_A* 3o0x_A*
Probab=100.00 E-value=6.8e-87 Score=661.10 Aligned_cols=239 Identities=31% Similarity=0.619 Sum_probs=215.5
Q ss_pred CccccCCC--CCCCCceeccCCCCcceEEEcCCCC----CCCcceeeccccchhHHhhhcccccccCCCcEEEEEEEeec
Q 041813 1 IFYEPFDD--PFDGRWVVSENDDYKGVWKHSKSEG----HDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQ 74 (543)
Q Consensus 1 ~F~E~Fd~--~w~~rWv~S~~~~y~G~W~~~~~~~----~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQYEVK~q 74 (543)
+|.|+|++ +|++|||+|+++++.|+|+++++.. ++|+|||++++|||||||++| +||+|++|+||||||||||
T Consensus 13 ~F~E~Fdd~~~w~~rWv~S~~kk~~G~w~~~~g~~~~~~~~DkGL~t~~~Ak~yaISakl-~pf~~~~k~LVvQYeVk~q 91 (265)
T 3pow_A 13 YFKEQFLDGDGWTSRWIESKHKSDFGKFVLSSGKFYGDEEKDKGLQTSQDARFYALSASF-EPFSNKGQTLVVQFTVKHE 91 (265)
T ss_dssp EEEECCCSGGGGGGTEEECCSSSCCCCEEEECCSSCSCTTTTCEEEECSSSEEEEEEEEE-EEECCTTSCEEEEEEEECT
T ss_pred EEEeecCCCCcccCCeeeCCCcCcCCeEEeecccccCCcccccceeecchhhhhhhhccc-CCccCCCCCEEEEEEEEec
Confidence 59999985 8999999999999999999998853 589999999999999999999 8999999999999999999
Q ss_pred cccccCCceeEeecccCCCCCCCCCCCCCCceEeecCCCCCC-CCeEEEEEecCCCCCCcccccccCCCCCCCCCCCcce
Q 041813 75 NELECGGAYLKFLQQQSTGWKPQEFDNNSPYSIMFGPDKCGN-TNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHV 153 (543)
Q Consensus 75 ~gldCGGaYiKLL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~-tnkvHfIf~~knp~tg~~ee~~lk~pp~~~~DklTHL 153 (543)
++|+|||||||||+ +++++++|+++|||+||||||+||. ++||||||||+|+ +|+++++++|+.|++|||
T Consensus 92 ~~idCGGaYiKLl~---~~~~~~~f~~~tpY~IMFGPD~CG~~~~kvHfI~~~k~~------~h~~~~~~~~~~D~~tHL 162 (265)
T 3pow_A 92 QNIDCGGGYVKLFP---NSLDQTDMHGDSEYNIMFGPDICGPGTKKVHVIFNYKGK------NVLINKDIRCKDDEFTHL 162 (265)
T ss_dssp TCCSEEECCEEEEC---TTCCGGGCCTTSCCSEEEEEEEESTTCEEEEEEEEETTE------EEECSSCCBCCCSSSEEE
T ss_pred cccccCceEEEeec---CCCCHhhcCCCCCceEEecCcccCCCCCEEEEEEEcCCc------cccccCCCCCCCCCCCce
Confidence 99999999999997 4589999999999999999999998 9999999999985 577888999999999999
Q ss_pred EEEEEeCCCceEEEeCCeEeeccccCcCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccCCC
Q 041813 154 YTAVLQPDNILQILIDGKEEKKTYFLSEKDFDPPLIPTKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDD 233 (543)
Q Consensus 154 YTLIl~pdntyeI~IDg~~~~~GsL~~~~Df~Pp~~Ppk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE~~P~~I~Dp 233 (543)
|||||+|||||||+|||+++.+|||++++||.||
T Consensus 163 YTLIi~pdntyeI~ID~~~v~~GsL~~d~df~Pp---------------------------------------------- 196 (265)
T 3pow_A 163 YTLIVRPDNTYEVKIDNSQVESGSLEDDWDFLPG---------------------------------------------- 196 (265)
T ss_dssp EEEEECTTSEEEEEETTEEEEEEEHHHHSCC-------------------------------------------------
T ss_pred EEEEEcCCCeEEEEECCEEeeeccccCccccCCC----------------------------------------------
Confidence 9999999999999999999999999965555443
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCCC
Q 041813 234 EAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNG 313 (543)
Q Consensus 234 ~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG 313 (543)
T Consensus 197 -------------------------------------------------------------------------------- 196 (265)
T 3pow_A 197 -------------------------------------------------------------------------------- 196 (265)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCcCCCCCCCccCCCCCcccceeeEEEeeecCCceEeeEEeeCCHHHHHHHHHhccCCchHHHHHhhHHh
Q 041813 314 IWKPRQIQNPHYFEVAEPNFEPISAVGIEIWTMQDGILFDNILITCDENVADLYRETTWKPKFEVEKAKHKAE 386 (543)
Q Consensus 314 ~WkPr~I~NP~Y~ed~~p~~~~i~~iG~ElW~~~~gilFDNI~I~~d~~~A~~~~~~t~~~k~~~E~~~~~~~ 386 (543)
.++|+.+ .|.+|++||||||||++|++|||||||||+++|++++++||+.++..|++..++.
T Consensus 197 ------~~d~~ly-----~~~~i~~vGldlWQvksGtiFDNiLITDd~~~A~~~~eetw~~~k~~Ek~~~~~~ 258 (265)
T 3pow_A 197 ------SGDPSIY-----AYDNFGVLGLDLWQVKSGTIFDNFLITNDEAYAEEFGNETWGVTKAAEKQMKDKQ 258 (265)
T ss_dssp ----------CTT-----CCSCEEEEEEEEEESSCCCEEEEEEEESCHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred ------CCCcccc-----ccccccEEEEEEEEecCCeEeccEEecCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 2333333 5678999999999999999999999999999999999999999999998766543
No 4
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=100.00 E-value=2.6e-37 Score=268.98 Aligned_cols=100 Identities=57% Similarity=1.122 Sum_probs=83.7
Q ss_pred CCCCCCCCCCCCCCccccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccC
Q 041813 191 TKMIPDPDDKKPEDWDERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEA 270 (543)
Q Consensus 191 pk~I~DP~d~KP~DWdd~~~IpDP~a~KPeDWDE~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~ 270 (543)
|++|+||+++||+|||++++|+||+|+||+|||+ +++|+||+++||++|++++|
T Consensus 1 p~~I~Dp~~~KPeDWd~~~~I~DP~a~KPeDWde---------------------~~~I~dP~~~kP~dWd~~~~----- 54 (101)
T 1hhn_A 1 SKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDK---------------------PEHIPDPDAKKPEDWDEEMD----- 54 (101)
T ss_dssp CCSBCCSTTCCCSCCSTTSEECCSSCCCCSTTCC---------------------CSEEECTTCCCCTTCCHHHH-----
T ss_pred CcccCCcccCCccccccccccCCcccCCccCccc---------------------cccCCCcccCCccccCcccC-----
Confidence 5788999999999999888888888888888874 45788888888888887765
Q ss_pred CCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCccCCCCCCCCCCCCcCCCCCCCccCC
Q 041813 271 PKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAE 330 (543)
Q Consensus 271 P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I~NP~YkG~WkPr~I~NP~Y~ed~~ 330 (543)
|+|++|||.||+|+|+|+++||+||+|+|.|+|++|+||+|+++.+
T Consensus 55 --------------G~W~~p~I~NP~ykG~W~pp~I~NP~Ykg~W~p~~I~NP~y~~d~~ 100 (101)
T 1hhn_A 55 --------------GEWEPPVIQNPEYKGEWKPRQIDNPDYKGTWIHPEIDNPEYSPDAN 100 (101)
T ss_dssp --------------SSCCCCEEECTTCCSSCCCCCEECSSCCCCCCCCCBCCTTCCSSSC
T ss_pred --------------CcccCCcCCCccCcCcccCCccCCCCCCCCccCCccCCCCccCCCC
Confidence 5556677788889999999999999999999999999999998753
No 5
>1jhn_A Calnexin; jelly-roll, beta sandwich, chaperone; 2.90A {Canis lupus familiaris} SCOP: b.29.1.12 b.104.1.1
Probab=100.00 E-value=6.9e-37 Score=318.67 Aligned_cols=127 Identities=40% Similarity=0.825 Sum_probs=118.2
Q ss_pred CCcc----ccCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcC
Q 041813 203 EDWD----ERAKIPDPEAVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKC 278 (543)
Q Consensus 203 ~DWd----d~~~IpDP~a~KPeDWDE~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c 278 (543)
+||+ -.++|+||+++||+|||++ .+|+||+|+||+||++++|.+|+||+|+||+||++++...|.+|...+|.|
T Consensus 221 ~D~~Pp~~pp~~I~Dp~~~KP~DWde~--~~I~Dp~a~KPeDWde~~p~~I~Dp~A~KPedWdd~ep~~I~DP~a~KPed 298 (424)
T 1jhn_A 221 NDMTPPVNPSREIEDPEDQKPEDWDER--PKIPDPDAVKPDDWNEDAPAKIPDEEATKPDGWLDDEPEYVPDPDAEKPED 298 (424)
T ss_dssp -----CCSSCCCCBCTTCCCCTTCCCC--SEEECSSCCCCTTCCSSCCSEEECTTCCCCSSCBSSSCSCCBCTTCCCCTT
T ss_pred HhccccCCCcccccCccccCccccccc--cccCCcccCCccccccCCccccCCccccCCCCccccccccCCCcccCCccc
Confidence 6788 5678999999999999986 499999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcccCCCCCCCCCC-----CCCCCCccCCCCCCCCCCCCcCCCCCCCccCCC
Q 041813 279 AEAPGCGKWRRPMKSNPAYK-----GKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEP 331 (543)
Q Consensus 279 ~~~~gcG~W~~P~I~NP~YK-----G~W~pp~I~NP~YkG~WkPr~I~NP~Y~ed~~p 331 (543)
|+..+||+|++|||.||+|+ |+|++|||.||+|+|.|+|++|+||+|++.+.|
T Consensus 299 Wd~~~~G~W~~P~i~NP~~~~~~gcG~W~~P~I~NP~ykG~W~pp~I~NP~Ykg~W~p 356 (424)
T 1jhn_A 299 WDEDMDGEWEAPQIANPKCESAPGCGVWQRPMIDNPNYKGKWKPPMIDNPNYQGIWKP 356 (424)
T ss_dssp CCTTTSCCCCCCBCCCGGGTTSSCBSSCCCCEEECTTCCCSCCCCEEECTTCCCSCCC
T ss_pred cccCCCccccCcccCCchhcccccCCcccCCCCCCccccCcccCCccCCCcccccccc
Confidence 99999999999999999998 999999999999999999999999999987755
No 6
>1hhn_A Calreticulin; molecular chaperone; NMR {Rattus norvegicus} SCOP: b.104.1.1 PDB: 1k9c_A 1k91_A
Probab=99.90 E-value=1.8e-24 Score=188.46 Aligned_cols=87 Identities=41% Similarity=0.905 Sum_probs=74.3
Q ss_pred CCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCCCCCCCCCCCcc
Q 041813 227 PAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNPAYKGKWHAPLI 306 (543)
Q Consensus 227 P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP~YKG~W~pp~I 306 (543)
|.+|+||+++||+||++ +++|+||+|+||+||++ +.+|.||+| ++|..+|..++|+|+++||
T Consensus 1 p~~I~Dp~~~KPeDWd~--~~~I~DP~a~KPeDWde-------~~~I~dP~~---------~kP~dWd~~~~G~W~~p~I 62 (101)
T 1hhn_A 1 SKKIKDPDAAKPEDWDE--RAKIDDPTDSKPEDWDK-------PEHIPDPDA---------KKPEDWDEEMDGEWEPPVI 62 (101)
T ss_dssp CCSBCCSTTCCCSCCST--TSEECCSSCCCCSTTCC-------CSEEECTTC---------CCCTTCCHHHHSSCCCCEE
T ss_pred CcccCCcccCCcccccc--ccccCCcccCCccCccc-------cccCCCccc---------CCccccCcccCCcccCCcC
Confidence 34566666666666643 57999999999999998 459999999 4577788999999999999
Q ss_pred CCCCCCCCCCCCcCCCCCCCccCCC
Q 041813 307 ENPNYNGIWKPRQIQNPHYFEVAEP 331 (543)
Q Consensus 307 ~NP~YkG~WkPr~I~NP~Y~ed~~p 331 (543)
.||+|+|.|+|++|+||+|++.+.|
T Consensus 63 ~NP~ykG~W~pp~I~NP~Ykg~W~p 87 (101)
T 1hhn_A 63 QNPEYKGEWKPRQIDNPDYKGTWIH 87 (101)
T ss_dssp ECTTCCSSCCCCCEECSSCCCCCCC
T ss_pred CCccCcCcccCCccCCCCCCCCccC
Confidence 9999999999999999999987765
No 7
>3rg0_A Calreticulin; beta-sandwich, chaperone, monoglucosylated proteins binding, carbohydrate binding, calcium binding, endoplasmic reticulu; 2.57A {Mus musculus}
Probab=99.54 E-value=9.4e-16 Score=156.29 Aligned_cols=68 Identities=43% Similarity=0.792 Sum_probs=33.9
Q ss_pred CCCCCCCCCCCCCccCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCcCcCCCCCCcccCCCCCCC
Q 041813 216 AVKPGDWDEDSPAEIEDDEAVKPEGWLDDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPKCAEAPGCGKWRRPMKSNP 295 (543)
Q Consensus 216 a~KPeDWDE~~P~~I~Dp~a~KPedW~ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~c~~~~gcG~W~~P~I~NP 295 (543)
...++|||+..|.+|+||+++||+||+| +++|+||+++||+
T Consensus 180 GsL~~Dwd~~ppk~I~Dp~d~KPedWdd--~~~I~DP~a~KPe------------------------------------- 220 (332)
T 3rg0_A 180 GSLEDDWDFLPPKKIKDPDAAKPEDWDE--RAKIDDPTDSKPE------------------------------------- 220 (332)
T ss_dssp EEHHHHSCCSCCSEEECTTCCCCTTCCC--CCCCC---------------------------------------------
T ss_pred ccccCCCCcCCccccCCcccCCcccCcC--cccCCCcccCCcc-------------------------------------
Confidence 4567899999999999999999999954 7899999999985
Q ss_pred CCCCCCCCCccCCCCCCCCCCCCcCCCCCCCccCCC
Q 041813 296 AYKGKWHAPLIENPNYNGIWKPRQIQNPHYFEVAEP 331 (543)
Q Consensus 296 ~YKG~W~pp~I~NP~YkG~WkPr~I~NP~Y~ed~~p 331 (543)
.|- ||+|||.|+|++|+||+|.+.+.|
T Consensus 221 ----DWd-----~p~YkG~Wkp~~I~NP~YkG~W~p 247 (332)
T 3rg0_A 221 ----DWD-----KGGSGGEWKPRQIDNPDYKGTWIH 247 (332)
T ss_dssp -----------------------------CCCCCCC
T ss_pred ----ccc-----cccccccccccccCCCcccCCccC
Confidence 264 899999999999999999976644
No 8
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=99.33 E-value=4.5e-13 Score=98.31 Aligned_cols=35 Identities=57% Similarity=1.158 Sum_probs=32.5
Q ss_pred CcccCCCCCCCCCCCCCCCccCCCcccCCCcCCCc
Q 041813 243 DDEAEEIEDPEASKPEDWDEEEDGEWEAPKVANPK 277 (543)
Q Consensus 243 ddep~~IpDP~a~KPedWdd~~dGeW~~P~I~NP~ 277 (543)
+++|++|+||+|+||+|||+++||+|++|+|+||+
T Consensus 4 ~dep~~IpDP~a~KP~DWdde~DGeWe~P~I~NPk 38 (38)
T 3ici_C 4 MDEPKFIPDPNAEKPDDWNEDMDGEWEAPRISNPA 38 (38)
T ss_pred ccccccccCCCCCCCCCcCcCcCCcccCCcCCCcC
Confidence 46899999999999999999999999999999985
No 9
>3ici_C Calnexin, PP90; protein-protein complex, endoplasmic reticulum, glycoprotein isomerase, rotamase, chaperone, lectin, membrane; HET: MES; 1.70A {Canis lupus familiaris}
Probab=97.75 E-value=1.6e-05 Score=58.47 Aligned_cols=21 Identities=62% Similarity=1.083 Sum_probs=11.1
Q ss_pred ccccCCCCCCCCCCCCCCCCC
Q 041813 205 WDERAKIPDPEAVKPGDWDED 225 (543)
Q Consensus 205 Wdd~~~IpDP~a~KPeDWDE~ 225 (543)
+++.++|+||+|+||+|||+.
T Consensus 4 ~dep~~IpDP~a~KP~DWdde 24 (38)
T 3ici_C 4 MDEPKFIPDPNAEKPDDWNED 24 (38)
T ss_pred ccccccccCCCCCCCCCcCcC
Confidence 344455555555555555543
No 10
>4b1m_A Levanase; hydrolase, CBM66; HET: FRU; 1.10A {Bacillus subtilis} PDB: 4b1l_A* 4azz_A
Probab=42.23 E-value=1.2e+02 Score=27.47 Aligned_cols=130 Identities=15% Similarity=0.276 Sum_probs=66.1
Q ss_pred CCCCCCCCceeccCCCCcceEEEcCCCCCCCcceeeccccchhHHhhhcccccccCCCcEEEEEEEeeccccccCCceeE
Q 041813 6 FDDPFDGRWVVSENDDYKGVWKHSKSEGHDDYGLLVSEKARKYAIVKELNENLNIKSQKVILQYDVRLQNELECGGAYLK 85 (543)
Q Consensus 6 Fd~~w~~rWv~S~~~~y~G~W~~~~~~~~~DkGLv~~~~ak~yaISa~l~kp~~~k~k~LVvQYEVK~q~gldCGGaYiK 85 (543)
|+. -...|.. +.|.|.++.+ ||+.......++++ + .+-++++|+-+||+..+-..|-+-|
T Consensus 26 F~g-~l~gW~~-----~~g~W~v~~g------gl~~~~~~~~~l~t---~----~~~~Df~le~dvk~~~~~~~g~~Gi- 85 (185)
T 4b1m_A 26 FMS-NMTGWTT-----VNGTWADTIE------GKQGRSDGDSFILS---S----ASGSDFTYESDITIKDGNGRGAGAL- 85 (185)
T ss_dssp CCB-SCCCCEE-----CSSEEEEETT------EEEEEEEEEEEEEE---E----EEESSEEEEEEEEEEEEEEEEEEEE-
T ss_pred ccC-cccCCeE-----CCCeEEEeCC------cEEEecCCCcEEEc---C----CCccCEEEEEEEEEcCCCCcceEEE-
Confidence 544 3456864 3599999853 55544333223322 1 1236799999999876521121223
Q ss_pred eecccCCCCCCCCCCCCCCceEeecCCCCCCCCeEEEEEecCCCCCCcccccccCCCCCCCCCCCcceEEE-EEeCCCce
Q 041813 86 FLQQQSTGWKPQEFDNNSPYSIMFGPDKCGNTNKVHFIFKHKNPKSGEYVEHHLKDPPSVPSDKFSHVYTA-VLQPDNIL 164 (543)
Q Consensus 86 LL~~~~~~~~~~~f~~~TpY~IMFGPDkCG~tnkvHfIf~~knp~tg~~ee~~lk~pp~~~~DklTHLYTL-Il~pdnty 164 (543)
+|+.+. +...-|.+.+.|. .+++.+ ++..+ |.+ ..|...+..... ..-|+| |+--+++.
T Consensus 86 ~fR~~~--------d~~~gY~~~i~~~----~~~~~l-~k~~~---g~~--~~L~~~~~~~~~--g~w~~l~I~~~G~~i 145 (185)
T 4b1m_A 86 MFRSDK--------DAKNGYLANVDAK----HDLVKF-FKFEN---GAA--SVIAEYKTPIDV--NKKYHLKTEAEGDRF 145 (185)
T ss_dssp EEEECT--------TSSSEEEEEEETT----TTEEEE-EEEET---TEE--EEEEEEECCCCS--SCCEEEEEEEETTEE
T ss_pred EEEEcC--------CCCCcEEEEEECC----CCEEEE-EEEeC---CcE--EEeeeccccCCC--CCeEEEEEEEECCEE
Confidence 344211 1224588888774 234433 34333 322 112211111111 234555 33347899
Q ss_pred EEEeCCeEeec
Q 041813 165 QILIDGKEEKK 175 (543)
Q Consensus 165 eI~IDg~~~~~ 175 (543)
++.|||+.+..
T Consensus 146 ~~~vnG~~v~~ 156 (185)
T 4b1m_A 146 KIYLDDRLVID 156 (185)
T ss_dssp EEEETTEEEEE
T ss_pred EEEECCEEEEE
Confidence 99999987654
No 11
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.62 E-value=41 Score=27.79 Aligned_cols=11 Identities=0% Similarity=0.220 Sum_probs=4.9
Q ss_pred HHHHHHHHHhc
Q 041813 447 IILTIVVTTLS 457 (543)
Q Consensus 447 ~~~~~~~~~~~ 457 (543)
+++++++++++
T Consensus 22 lliGllllliw 32 (79)
T 2knc_B 22 LLIGLAALLIW 32 (79)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33444444443
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=21.90 E-value=63 Score=24.22 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=7.9
Q ss_pred CCchHHHHHHHHHH
Q 041813 433 QPNITVGILFSIFF 446 (543)
Q Consensus 433 ~p~~~~~~~~~~~~ 446 (543)
.+.+++|+++++++
T Consensus 10 ~~~IA~gVVgGv~~ 23 (44)
T 2ks1_B 10 IPSIATGMVGALLL 23 (44)
T ss_dssp SSSSTHHHHHHHHH
T ss_pred cceEEeehhHHHHH
Confidence 45566666654443
No 13
>2quo_A Heat-labIle enterotoxin B chain; beta sandwich, claudin-4 binding domain, therapeutic agent; 1.75A {Clostridium perfringens}
Probab=21.42 E-value=61 Score=28.27 Aligned_cols=24 Identities=33% Similarity=0.798 Sum_probs=18.0
Q ss_pred CceeEeecccCCCCCCCCCCCCCCceEeec
Q 041813 81 GAYLKFLQQQSTGWKPQEFDNNSPYSIMFG 110 (543)
Q Consensus 81 GaYiKLL~~~~~~~~~~~f~~~TpY~IMFG 110 (543)
|-|+-.+..+ ..+++.-||+|+|-
T Consensus 101 gqyvlvmkan------ssysgnypysilfq 124 (126)
T 2quo_A 101 GQYVLVMKAN------SSYSGNYPYSILFQ 124 (126)
T ss_dssp EEEEEEEEES------SCCSSCBCCEEEEE
T ss_pred CcEEEEEecc------CcccCCCCceEeee
Confidence 6777777532 46788999999993
Done!