BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041814
(316 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C9S2|FB91_ARATH F-box protein At1g78100 OS=Arabidopsis thaliana GN=At1g78100 PE=1
SV=1
Length = 334
Score = 298 bits (762), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 166/340 (48%), Positives = 216/340 (63%), Gaps = 30/340 (8%)
Query: 1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISP---DS 57
MD FD +PD +++ I + V DVKTLIRCRSVSKRFNSL +Q+ESL L++D+++ DS
Sbjct: 1 MDAFDAIPDPVVIDILNRVGDVKTLIRCRSVSKRFNSLATQSESLLLQLDQILGATESDS 60
Query: 58 DSDSLFVTFLKVFLKSLQDLLTNTTSKPQTRPQ---QTQNSPAEILSQFLRIKNLQIELP 114
+ DS +F + KS+ LL SKP + ++ +PA+ILS F RI+NL++EL
Sbjct: 61 EIDSPIASFFRSLFKSIHGLLPPIFSKPANSDEILTRSPKTPAQILSGFERIRNLEVELY 120
Query: 115 GGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT--------------EEDVDIAGG 160
GGD+ L+KG VKW+AEFGK+L SCVI+ F+S + T E D + G
Sbjct: 121 GGDVKLEKGAAVKWKAEFGKTLKSCVIVAFRSATVNTSAATEAAAVVDGVVESDSEFVCG 180
Query: 161 LKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEA 220
LK RV+WTIS+L+AAS RH++++++V DH EME L++ D DGEGTVVMD GM+E R
Sbjct: 181 LKTRVVWTISALMAASTRHYLMRDLVKDHKEMEKLIVRDSDGEGTVVMDAAGMKEYR--- 237
Query: 221 AQVSEEEGWGRIRTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDD 280
+E G + R RT+VPSVRM MRH P LML GI +E ATLVVVR DD
Sbjct: 238 --ETEVRGDNKESERVGERTVVPSVRMSMRHAPSLMLKSGICLEAATLVVVRPTGVASDD 295
Query: 281 VEDAELALGAF-GDGSS---REAVLEMLKSRSYMLEMNSF 316
D EL AF GDG EAV +LK R +LEMNSF
Sbjct: 296 -NDVELVTEAFAGDGDDCMYGEAVTALLKRRRNVLEMNSF 334
>sp|Q9LM18|FB303_ARATH F-box protein At1g22220 OS=Arabidopsis thaliana GN=At1g22220 PE=2
SV=1
Length = 314
Score = 290 bits (743), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 160/325 (49%), Positives = 217/325 (66%), Gaps = 20/325 (6%)
Query: 1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
MD FD LPD +I+ I + V DVKTL+RC S+SKRFNSLV Q+ESL+LR+D +S D
Sbjct: 1 MDVFDGLPDPIIVDILNKVGDVKTLLRCSSLSKRFNSLVPQSESLTLRLDHSVS-----D 55
Query: 61 SLFVT-FLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEILSQFLRIKNLQIELPGGDLN 119
S VT + L LL+ +KP T + + P +ILS+F RI+NL +ELPGGD+
Sbjct: 56 SPVVTSIFRSLFNGLVSLLSKP-AKPITITTLSPSLPFKILSRFDRIRNLDVELPGGDVK 114
Query: 120 LDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT-------EEDVDIAGGLKMRVMWTISSL 172
L+KG VKW+AEFGK+L SCVI+ F+S T + E D + GLK RV+WTIS+L
Sbjct: 115 LEKGAAVKWKAEFGKTLKSCVIVAFRSAGTVSSPVAVEGESDAEFVTGLKTRVVWTISAL 174
Query: 173 IAASARHFMLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRI 232
+AAS+RH++++E+V +H E+ESL++ D++ EGTVVM++EG++E R A+V +EE
Sbjct: 175 MAASSRHYLMREVVKEHEEIESLVMRDKEREGTVVMNEEGLKELRNTEARVEDEE----- 229
Query: 233 RTRTRTRTMVPSVRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAF- 291
R R++VPSVRM MRH P L L GI +E ATLV+VR + + +DAELA AF
Sbjct: 230 RVVKNKRSVVPSVRMSMRHAPSLKLKSGICLESATLVIVRPSGADFEVGDDAELATEAFV 289
Query: 292 GDGSSREAVLEMLKSRSYMLEMNSF 316
GD EAV+ +LK + LEMNSF
Sbjct: 290 GDCMYGEAVVALLKCKKNALEMNSF 314
>sp|Q9C534|FB19_ARATH F-box protein At1g30200 OS=Arabidopsis thaliana GN=At1g30200 PE=2
SV=1
Length = 379
Score = 181 bits (459), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 195/369 (52%), Gaps = 65/369 (17%)
Query: 1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
DHFD LPD+L+LLIF V+DVK L RC VS+RF+SLV E++ +RVD VIS D S
Sbjct: 23 FDHFDLLPDSLLLLIFDKVADVKDLGRCCIVSRRFHSLVPFVENVLVRVDCVISDDDSSS 82
Query: 61 SLFVTFLKVFLKSLQDL---------LTNTTSKPQTRPQQ-------------------- 91
S + S+ D L P +P Q
Sbjct: 83 SDENHRFSLNTASISDAGGAGGSFSALFRLVFAPIFKPFQMLGQILGPKRSSSSFDASFS 142
Query: 92 --------TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIG 143
T +SP ++L F I+ L+IELP G+L ++ G+ +KWRA+FG +L +C+I+G
Sbjct: 143 AINDEIGVTHHSPTQVLKNFGEIRFLKIELPTGELGIEDGILLKWRADFGSTLDNCMILG 202
Query: 144 ----FKSGSTATEED-VD-----------IAGGLKMRVMWTISSLIAASARHFMLKEIVG 187
+S S E+ VD GGLK+RV+WTISSLIAASARH++L+ I+
Sbjct: 203 ASSVIQSNSVKNHENSVDEDNGNIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIN 262
Query: 188 DHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRM 247
+H ++ L+L D DG+G + M++E + E R+ S RT+VP++ M
Sbjct: 263 EHKSLDRLVLSDADGQGVLCMNREQLEELRVTPLSASS----------ASKRTLVPALNM 312
Query: 248 RMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSR 307
R+ + P L L G ++GATLV +R + K +V DA AF + A + ++K R
Sbjct: 313 RLWYAPELDLPDGTVLKGATLVAIRPSE-SKKEVCDASWLSDAFEEPFGTVAKM-LIKRR 370
Query: 308 SYMLEMNSF 316
+Y LEMNSF
Sbjct: 371 TYCLEMNSF 379
>sp|O49508|FB237_ARATH F-box protein At4g18380 OS=Arabidopsis thaliana GN=At4g18380 PE=2
SV=1
Length = 380
Score = 171 bits (434), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 97/246 (39%), Positives = 140/246 (56%), Gaps = 33/246 (13%)
Query: 92 TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSGSTAT 151
T +SP ++L F IK L+IELP G+L +D GV +KWRAEFG +L +CVI+G S T
Sbjct: 147 THHSPTQVLKNFDEIKFLKIELPSGELGIDDGVLLKWRAEFGSTLENCVILGASSVIPPT 206
Query: 152 EEDVDIA---------------------GGLKMRVMWTISSLIAASARHFMLKEIVGDHH 190
D A GGLK+RV+WTISSLIAASARH++L+ I+ +H
Sbjct: 207 NSDKTEASSAPVAAVEDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQPIIAEHK 266
Query: 191 EMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPSVRMRMR 250
++SL+L D DG+G + M+++ + E R++ S RT+VP++ MR+
Sbjct: 267 TLDSLVLTDVDGQGVLCMNRDQLEELRVKPLSASS----------ASKRTLVPALNMRLW 316
Query: 251 HVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEMLKSRSYM 310
+ P L L G ++GATLV +R + K +V D AF + A + ++K R+Y
Sbjct: 317 YAPSLELPDGTVLKGATLVAIRPSE-SKKEVCDVSWVSSAFDEPYGVAAKM-LVKRRTYC 374
Query: 311 LEMNSF 316
LEMNSF
Sbjct: 375 LEMNSF 380
>sp|Q9FNK5|FB285_ARATH F-box protein At5g46170 OS=Arabidopsis thaliana GN=At5g46170 PE=2
SV=1
Length = 395
Score = 167 bits (422), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 96/252 (38%), Positives = 142/252 (56%), Gaps = 39/252 (15%)
Query: 92 TQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKS----- 146
T +SP ++L F I+ L+IELP G+L +D GV +KWRAEFG +L +CVI+G S
Sbjct: 156 THHSPTQVLKNFDEIRYLRIELPSGELGIDDGVLLKWRAEFGSTLDNCVILGASSVIPPN 215
Query: 147 -----------------GSTATE-----EDVDIAGGLKMRVMWTISSLIAASARHFMLKE 184
GS + + E GGLK+RV+WTISSLIAASARH++L+
Sbjct: 216 PMRVSQACDTTTVVEAPGSGSDDNGSIPESFYTNGGLKLRVVWTISSLIAASARHYLLQP 275
Query: 185 IVGDHHEMESLLLVDRDGEGTVVMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMVPS 244
I+ +H ++SL+L D DG+G + M+++ + E R++ S RT+VP+
Sbjct: 276 IIAEHKTLDSLVLTDSDGQGVLCMNRDQLEELRVKPLAASS----------ASKRTLVPA 325
Query: 245 VRMRMRHVPRLMLAGGIWVEGATLVVVRANAGGKDDVEDAELALGAFGDGSSREAVLEML 304
+ MR+ + P L L G ++GATLV +R + K +V D AF + A + ++
Sbjct: 326 LNMRLWYAPTLELPDGTVLKGATLVAIRPSE-SKKEVSDISWVSSAFEEPYETAAKM-LV 383
Query: 305 KSRSYMLEMNSF 316
K R+Y LEMNSF
Sbjct: 384 KRRTYCLEMNSF 395
Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 42/53 (79%)
Query: 1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVI 53
+DHFD LPD+++LL+F+ + DVK L RC VS+RF+SLV Q +++ +RVD VI
Sbjct: 24 IDHFDHLPDSILLLVFNKIGDVKALGRCCVVSRRFHSLVPQVDNVVVRVDCVI 76
>sp|Q9M0E1|FBL77_ARATH F-box/LRR-repeat protein At4g29420 OS=Arabidopsis thaliana
GN=At4g29420 PE=2 SV=1
Length = 446
Score = 36.2 bits (82), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 5 DQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSL 47
D+LP L + I S ++D ++L RCR SK NSL + +++L
Sbjct: 2 DELPPELWIKILSRINDSESLARCRVASKTLNSLSREVRAVNL 44
>sp|Q9LYZ4|FBL79_ARATH F-box/LRR-repeat protein At5g02910 OS=Arabidopsis thaliana
GN=At5g02910 PE=2 SV=1
Length = 458
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 69/158 (43%), Gaps = 19/158 (12%)
Query: 1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSDSD 60
MD LPD ++ I SSV K+ IR +SKR+ + S+T SLS+ R P+S
Sbjct: 10 MDFISSLPDEILHHILSSVP-TKSAIRTSLLSKRWRYVWSETPSLSIDCRRA-DPNSIDK 67
Query: 61 SL-FVTFLKVFLKSLQDLLTNTTSKPQTRPQQTQNSPAEIL---SQFLRIKNL------- 109
+L F + K+ L L N + + AE L S+ R++N
Sbjct: 68 TLSFFSAPKITSFHLHTTLLNRIDSVNGCIEFAISHNAEKLSLESRDYRVRNYKFPDFFY 127
Query: 110 ------QIELPGGDLNLDKGVTVKWRAEFGKSLTSCVI 141
Q+ + G ++L TV W + SL++C +
Sbjct: 128 TNSSVKQLFVDSGSVHLIPRCTVSWTSLKNLSLSNCTL 165
>sp|Q9FFU7|FBL90_ARATH Putative F-box/LRR-repeat protein At5g54820 OS=Arabidopsis
thaliana GN=At5g54820 PE=4 SV=1
Length = 472
Score = 33.5 bits (75), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPD 56
D LPD L+++I S + +K +R +SKR+ L +T +LS + ++PD
Sbjct: 7 DRLSSLPDILLIMIISFLP-LKECVRTSVLSKRWRYLCLETTNLSFKESDYVNPD 60
>sp|Q5BPS3|DOR_ARATH F-box protein DOR OS=Arabidopsis thaliana GN=DOR PE=1 SV=2
Length = 387
Score = 32.3 bits (72), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV 39
++F+ +P L++ IFS S VK++ RCR VSK + S++
Sbjct: 20 ENFEPIPIDLVIEIFSR-SPVKSIARCRCVSKLWASIL 56
>sp|Q9MAP1|FB33_ARATH Putative F-box protein At1g33020 OS=Arabidopsis thaliana
GN=At1g33020 PE=4 SV=2
Length = 548
Score = 32.0 bits (71), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDR 51
++ D +P LIL IFS +S K++ RCR VSK + S++ L + R
Sbjct: 5 ENLDSIPTDLILEIFSRMS-TKSIGRCRCVSKLWKSMLGHPYFTELFLTR 53
>sp|A1R0Q9|SYI_BORT9 Isoleucine--tRNA ligase OS=Borrelia turicatae (strain 91E135)
GN=ileS PE=3 SV=1
Length = 1044
Score = 31.6 bits (70), Expect = 7.9, Method: Composition-based stats.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 18/138 (13%)
Query: 88 RPQQTQNSPAEILSQFLRIKNLQIELPGGDLNLDKGVTVKWRAEFGKSLTSCVIIGFKSG 147
+ QQ N EI+ + + K ++I+ N ++ VT K +A F + L S + + K G
Sbjct: 838 KEQQILNEMKEIILEEINAKEIKIKS-----NEEELVTYKAKANF-RELGSKLGVNMKVG 891
Query: 148 STA----TEEDV-DIAGGLKMRVMWTISSLIAASARHFMLKEIVGDHHEMESLLLVDRDG 202
S T ED+ I G K + I + + LK+I+ + HE E+L +++ D
Sbjct: 892 SLEIMKLTNEDILKIINGNKHIIK------INENTYNITLKDIILERHERENLKIINEDS 945
Query: 203 EGTVVMDKEGMRECRLEA 220
T+ +D E LE
Sbjct: 946 V-TIGLDALITEELYLEG 962
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,369,275
Number of Sequences: 539616
Number of extensions: 4215045
Number of successful extensions: 11593
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 11563
Number of HSP's gapped (non-prelim): 19
length of query: 316
length of database: 191,569,459
effective HSP length: 117
effective length of query: 199
effective length of database: 128,434,387
effective search space: 25558443013
effective search space used: 25558443013
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)