Query 041814
Match_columns 316
No_of_seqs 50 out of 52
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 10:55:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041814.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041814hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12937 F-box-like: F-box-lik 97.8 6.1E-06 1.3E-10 56.9 1.3 35 4-39 1-35 (47)
2 smart00256 FBOX A Receptor for 97.3 0.00013 2.8E-09 47.3 1.5 34 7-41 1-34 (41)
3 PF00646 F-box: F-box domain; 97.1 8.5E-05 1.8E-09 50.6 -0.4 37 4-41 3-39 (48)
4 KOG2120 SCF ubiquitin ligase, 96.0 0.0046 1E-07 61.4 3.0 105 3-112 97-218 (419)
5 KOG2997 F-box protein FBX9 [Ge 94.3 0.016 3.5E-07 57.3 0.9 38 2-39 105-146 (366)
6 KOG4341 F-box protein containi 73.3 1.8 3.9E-05 44.7 1.5 36 6-42 74-109 (483)
7 PLN03215 ascorbic acid mannose 40.9 17 0.00036 36.6 1.8 39 4-42 4-42 (373)
8 PF14218 COP23: Circadian osci 38.9 13 0.00028 31.6 0.7 27 23-49 37-63 (132)
9 PRK10963 hypothetical protein; 34.0 26 0.00056 32.0 1.8 42 176-218 7-51 (223)
10 cd04013 C2_SynGAP_like C2 doma 33.3 32 0.00068 30.0 2.1 36 223-258 102-145 (146)
11 KOG0281 Beta-TrCP (transducin 31.7 19 0.00041 37.1 0.6 37 2-39 73-113 (499)
12 PF08923 MAPKK1_Int: Mitogen-a 28.8 48 0.001 28.2 2.4 35 181-215 6-40 (119)
13 KOG4408 Putative Mg2+ and Co2+ 26.2 13 0.00028 37.8 -1.6 38 4-42 8-45 (386)
14 TIGR01617 arsC_related transcr 21.6 94 0.002 25.1 2.8 34 183-216 81-115 (117)
15 PF06153 DUF970: Protein of un 20.6 64 0.0014 27.5 1.7 53 207-271 47-101 (109)
16 PF04340 DUF484: Protein of un 20.3 26 0.00057 31.5 -0.7 48 170-218 4-54 (225)
No 1
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.85 E-value=6.1e-06 Score=56.86 Aligned_cols=35 Identities=34% Similarity=0.654 Sum_probs=30.8
Q ss_pred CCCCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814 4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV 39 (316)
Q Consensus 4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV 39 (316)
...||+|++..||+-+ |+++|.+|+.|||+|+.++
T Consensus 1 i~~LP~Eil~~If~~L-~~~dl~~~~~vcr~w~~~~ 35 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYL-DPRDLLRLSLVCRRWRRIA 35 (47)
T ss_dssp CCCS-HHHHHHHHTTS--HHHHHHHTTSSHHHHHHH
T ss_pred ChHhHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence 3689999999999988 9999999999999999987
No 2
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.27 E-value=0.00013 Score=47.29 Aligned_cols=34 Identities=41% Similarity=0.675 Sum_probs=31.0
Q ss_pred CchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814 7 LPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ 41 (316)
Q Consensus 7 LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~ 41 (316)
||++++..||+.+ |++.+.+|+.|||+|+.++..
T Consensus 1 lP~~ll~~I~~~l-~~~d~~~~~~vc~~~~~~~~~ 34 (41)
T smart00256 1 LPDEILEEILSKL-PPKDLLRLRKVSRRWRSLIDS 34 (41)
T ss_pred CCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcC
Confidence 7999999999888 679999999999999998754
No 3
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.14 E-value=8.5e-05 Score=50.56 Aligned_cols=37 Identities=41% Similarity=0.598 Sum_probs=30.0
Q ss_pred CCCCchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814 4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ 41 (316)
Q Consensus 4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~ 41 (316)
|.+||++++..||+++. .+++.+|+.|||+|++++-.
T Consensus 3 ~~~LP~~il~~Il~~l~-~~~~~~l~~vsk~~~~~~~~ 39 (48)
T PF00646_consen 3 LSDLPDEILQEILSYLD-PKDLLRLSLVSKRWRSLVDS 39 (48)
T ss_dssp HHHS-HHHHHHHHHTS--HHHHHHHCTT-HHHHHHHTT
T ss_pred HHHCCHHHHHHHHHHCc-HHHHHHHHHHhhHHHHHHcC
Confidence 67899999999999985 66699999999999998743
No 4
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0046 Score=61.41 Aligned_cols=105 Identities=30% Similarity=0.378 Sum_probs=66.8
Q ss_pred cCCCCchHHHHHHHhhccccchhhhhhhhhcccccccccccceEEEEeeecCCCCC-ChhHHHHHHHHHHhhh----hhc
Q 041814 3 HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQTESLSLRVDRVISPDSD-SDSLFVTFLKVFLKSL----QDL 77 (316)
Q Consensus 3 ~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~v~~v~vrvd~Vis~~~~-~~~~~~~~~k~i~Kpl----q~l 77 (316)
.||+||||+++.||+-+. -|+|.+-+.|+|||+.+... +++-.+.|- ++.+ .|+.+..+++.=++-| -++
T Consensus 97 ~~~slpDEill~IFs~L~-kk~LL~~~~VC~Rfyr~~~d-e~lW~~lDl---~~r~i~p~~l~~l~~rgV~v~Rlar~~~ 171 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCLC-KKELLKVSGVCKRFYRLASD-ESLWQTLDL---TGRNIHPDVLGRLLSRGVIVFRLARSFM 171 (419)
T ss_pred CcccCCHHHHHHHHHhcc-HHHHHHHHHHHHHHhhcccc-ccceeeecc---CCCccChhHHHHHHhCCeEEEEcchhhh
Confidence 489999999999999876 58899999999999999876 556677776 4444 4666666666511111 111
Q ss_pred ccC--CCCC-C---------CCCCCCCCCChHHHhhcccccceeeEE
Q 041814 78 LTN--TTSK-P---------QTRPQQTQNSPAEILSQFLRIKNLQIE 112 (316)
Q Consensus 78 ~~~--~~~~-~---------~~~~~~s~hSP~eVLk~F~~ir~L~IE 112 (316)
++| ++-. + ......+-.+---+|++-+.+++|.+|
T Consensus 172 ~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlE 218 (419)
T KOG2120|consen 172 DQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLE 218 (419)
T ss_pred cCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhcccc
Confidence 222 1100 0 000111222333489999999999988
No 5
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=94.32 E-value=0.016 Score=57.33 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=33.9
Q ss_pred CcCCCCchHHHHHHHhhcc----ccchhhhhhhhhccccccc
Q 041814 2 DHFDQLPDALILLIFSSVS----DVKTLIRCRSVSKRFNSLV 39 (316)
Q Consensus 2 D~Fd~LPD~Lll~IfnKi~----D~KtL~RC~~VSKrf~sLV 39 (316)
++|..|||++++.||.++= |.++|++|+.|||.|.-.+
T Consensus 105 ~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~ 146 (366)
T KOG2997|consen 105 ISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCA 146 (366)
T ss_pred hhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHH
Confidence 5688999999999999875 8999999999999997554
No 6
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=73.33 E-value=1.8 Score=44.69 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=32.2
Q ss_pred CCchHHHHHHHhhccccchhhhhhhhhcccccccccc
Q 041814 6 QLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQT 42 (316)
Q Consensus 6 ~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~v 42 (316)
.||.++++++|+-+ |+|+|.||..+++=||-++--.
T Consensus 74 ~LPpEl~lkvFS~L-Dtksl~r~a~~c~~~n~~AlD~ 109 (483)
T KOG4341|consen 74 SLPPELLLKVFSML-DTKSLCRAAQCCTMWNKLALDG 109 (483)
T ss_pred cCCHHHHHHHHHHH-hHHHHHHHHHHHHHhhhhhhcc
Confidence 58999999999854 9999999999999999988644
No 7
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=40.91 E-value=17 Score=36.55 Aligned_cols=39 Identities=28% Similarity=0.433 Sum_probs=35.1
Q ss_pred CCCCchHHHHHHHhhccccchhhhhhhhhcccccccccc
Q 041814 4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQT 42 (316)
Q Consensus 4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~v 42 (316)
...||++|+.+|.+++...-.+.|=.+||+-|.+-|++.
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~ 42 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGV 42 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcccc
Confidence 457999999999999987778999999999999998874
No 8
>PF14218 COP23: Circadian oscillating protein COP23
Probab=38.89 E-value=13 Score=31.65 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=20.7
Q ss_pred chhhhhhhhhcccccccccccceEEEE
Q 041814 23 KTLIRCRSVSKRFNSLVSQTESLSLRV 49 (316)
Q Consensus 23 KtL~RC~~VSKrf~sLVp~v~~v~vrv 49 (316)
-.--||-.||.||..+.+.-....++.
T Consensus 37 tp~~RC~~VS~Rl~~~~~~~~l~~l~~ 63 (132)
T PF14218_consen 37 TPQKRCQEVSQRLQNYYDNGGLNYLTT 63 (132)
T ss_pred CHHHHHHHHHHHHHHHHHccCCcEEEe
Confidence 345699999999999999954445544
No 9
>PRK10963 hypothetical protein; Provisional
Probab=33.97 E-value=26 Score=31.97 Aligned_cols=42 Identities=17% Similarity=0.201 Sum_probs=34.8
Q ss_pred hhhhHHHH--HHhhcccc-cceeeeeecCCCceEEechhhHHHHHH
Q 041814 176 SARHFMLK--EIVGDHHE-MESLLLVDRDGEGTVVMDKEGMRECRL 218 (316)
Q Consensus 176 SaRHyLL~--~Ii~dH~~-lesLvltDadgQG~l~M~keql~E~R~ 218 (316)
--++||.+ +...+||+ |+.|.+....| |++.+-..|+.-+|+
T Consensus 7 ~V~~yL~~~PdFf~~h~~Ll~~L~lph~~~-gaVSL~ErQ~~~LR~ 51 (223)
T PRK10963 7 AVVDYLLQNPDFFIRNARLVEQMRVPHPVR-GTVSLVEWQMARQRN 51 (223)
T ss_pred HHHHHHHHCchHHhhCHHHHHhccCCCCCC-CeecHHHHHHHHHHH
Confidence 34678776 57888998 89999997755 899999999998887
No 10
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=33.26 E-value=32 Score=29.95 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=29.6
Q ss_pred cccccccccccccCCC--------ccccceeeeeecccceeeeC
Q 041814 223 VSEEEGWGRIRTRTRT--------RTMVPSVRMRMRHVPRLMLA 258 (316)
Q Consensus 223 ~~~~~~~~~~~~~~~~--------RT~VPa~~MkL~yaP~LeLp 258 (316)
..+-|+|--|.....+ -+..|++++|+||-|...||
T Consensus 102 ~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~lP 145 (146)
T cd04013 102 RQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVLP 145 (146)
T ss_pred CCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeCC
Confidence 3456779888877666 47889999999999999988
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=31.74 E-value=19 Score=37.13 Aligned_cols=37 Identities=30% Similarity=0.509 Sum_probs=32.0
Q ss_pred CcCCCCc----hHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814 2 DHFDQLP----DALILLIFSSVSDVKTLIRCRSVSKRFNSLV 39 (316)
Q Consensus 2 D~Fd~LP----D~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV 39 (316)
|.-..|| |.+.+.||+-+ |.++|..|-.|||+|.-+.
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyl-d~~sLc~celv~k~W~r~l 113 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYL-DALSLCACELVCKEWKRVL 113 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhc-chhhhhHHHHHHHHHHHHh
Confidence 5567899 99999999876 8999999999999997654
No 12
>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.
Probab=28.83 E-value=48 Score=28.18 Aligned_cols=35 Identities=17% Similarity=0.438 Sum_probs=24.7
Q ss_pred HHHHHhhcccccceeeeeecCCCceEEechhhHHH
Q 041814 181 MLKEIVGDHHEMESLLLVDRDGEGTVVMDKEGMRE 215 (316)
Q Consensus 181 LL~~Ii~dH~~lesLvltDadgQG~l~M~keql~E 215 (316)
.|++++..-+.++.++++|+||==.+-...+...+
T Consensus 6 ~L~~ll~~v~Gl~~I~itDrDGvpi~~v~~~~~~~ 40 (119)
T PF08923_consen 6 FLQKLLSRVDGLQAIVITDRDGVPIAKVSSDSAPE 40 (119)
T ss_dssp HHHHHGGGSTTEEEEEEEETTS-EEEEEE-TTS-G
T ss_pred HHHHHHhccCCeEEEEEECCCCcEEEEecCCCCcc
Confidence 35889999999999999999986555544444333
No 13
>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]
Probab=26.20 E-value=13 Score=37.76 Aligned_cols=38 Identities=32% Similarity=0.488 Sum_probs=31.4
Q ss_pred CCCCchHHHHHHHhhccccchhhhhhhhhcccccccccc
Q 041814 4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQT 42 (316)
Q Consensus 4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~v 42 (316)
+..+|+.++..++|++ +.+.|++|+.||||...+-+..
T Consensus 8 le~~~~~~l~~vls~~-~~~~~~~~a~vs~rLk~~~s~~ 45 (386)
T KOG4408|consen 8 LEWLPRDPLHLVLSFL-LYRDLINCAYVSRRLKELGSHL 45 (386)
T ss_pred hhhcccccceeeeccc-chhhhhcceeechHHhhhhhcc
Confidence 5678999999999987 5889999999999987665544
No 14
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=21.57 E-value=94 Score=25.14 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=25.0
Q ss_pred HHHhhcccc-cceeeeeecCCCceEEechhhHHHH
Q 041814 183 KEIVGDHHE-MESLLLVDRDGEGTVVMDKEGMREC 216 (316)
Q Consensus 183 ~~Ii~dH~~-lesLvltDadgQG~l~M~keql~E~ 216 (316)
-++|.+||+ |++=++.+.+|+=.+.-+.|+++++
T Consensus 81 ~~~i~~~p~LikRPIi~~~~~~~~vG~~~e~~~~~ 115 (117)
T TIGR01617 81 LELLAEDPALLRRPLIVDTKNRLLIGFKSESIEEF 115 (117)
T ss_pred HHHHHhCcceEecCEEEeCCceEEecCCHHHHHHh
Confidence 367888998 8888998876655566666777665
No 15
>PF06153 DUF970: Protein of unknown function (DUF970); InterPro: IPR010375 This is a family of uncharacterised bacterial proteins.; PDB: 3M05_A.
Probab=20.63 E-value=64 Score=27.53 Aligned_cols=53 Identities=19% Similarity=0.203 Sum_probs=21.6
Q ss_pred EechhhHHHHHHHhhhcccccccccccccCCCcccc--ceeeeeecccceeeeCCeeEEeceEEEEE
Q 041814 207 VMDKEGMRECRLEAAQVSEEEGWGRIRTRTRTRTMV--PSVRMRMRHVPRLMLAGGIWVEGATLVVV 271 (316)
Q Consensus 207 ~M~keql~E~R~~~a~~~~~~~~~~~~~~~~~RT~V--Pa~~MkL~yaP~LeLp~G~~l~GATLVvI 271 (316)
..+.|+++|.=. -|+..|.+|+++ |...+-.-...+...|--+-.-|||..|+
T Consensus 47 Gvede~v~~vl~------------iIk~~c~~R~~~v~~~~~~~~~~~~~~~~pveV~vGGATVFVl 101 (109)
T PF06153_consen 47 GVEDEKVDEVLE------------IIKENCKKREQIVTPPPPISESGEMYIPYPVEVEVGGATVFVL 101 (109)
T ss_dssp EEEGGGHHHHHH------------HHHHHH--EEEEE-----------------EEEEE--EEEEEE
T ss_pred EecHHHHHHHHH------------HHHHhhcCceeeccCCCCCCCCcccccccceEEEEcccEEEEE
Confidence 345668887622 233368888873 43333222223334566778889998775
No 16
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=20.25 E-value=26 Score=31.48 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=12.5
Q ss_pred HHHHHHhhhhHHHH--HHhhcccc-cceeeeeecCCCceEEechhhHHHHHH
Q 041814 170 SSLIAASARHFMLK--EIVGDHHE-MESLLLVDRDGEGTVVMDKEGMRECRL 218 (316)
Q Consensus 170 SsLIAASaRHyLL~--~Ii~dH~~-lesLvltDadgQG~l~M~keql~E~R~ 218 (316)
-+|=+..-++||.+ +...+||+ |+.|.+-...| |++..-..|++-+|+
T Consensus 4 ~~l~~~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~-~avSL~erQ~~~LR~ 54 (225)
T PF04340_consen 4 DALDAEDVAAYLRQHPDFFERHPELLAELRLPHPSG-GAVSLVERQLERLRE 54 (225)
T ss_dssp --------------------------------------HHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHhCcHHHHhCHHHHHHcCCCCCCC-CcccHHHHHHHHHHH
Confidence 34556777889987 68899999 89998877764 799999999888887
Done!