Query 041814
Match_columns 316
No_of_seqs 50 out of 52
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 18:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041814.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041814hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fs1_A SKP2 F-BOX, cyclin A/CD 98.0 1.8E-06 6.2E-11 59.4 2.1 38 2-40 7-44 (53)
2 3v7d_B Cell division control p 97.2 4.4E-05 1.5E-09 66.9 -0.2 39 2-41 13-51 (464)
3 2ovr_B FBW7, F-BOX/WD repeat p 97.1 0.00014 4.8E-09 63.9 1.9 39 1-40 16-54 (445)
4 2e31_A FBS1, F-box only protei 97.0 0.00022 7.6E-09 66.3 2.4 37 3-40 50-87 (297)
5 2p1m_B Transport inhibitor res 96.8 0.0003 1E-08 64.6 1.2 37 2-38 4-40 (594)
6 1p22_A F-BOX/WD-repeat protein 96.7 0.00025 8.6E-09 62.5 -0.3 38 2-40 9-50 (435)
7 2ast_B S-phase kinase-associat 96.2 0.0015 5.2E-08 55.9 1.6 37 3-40 8-44 (336)
8 3ogk_B Coronatine-insensitive 95.5 0.0029 1E-07 58.2 0.8 34 6-39 15-48 (592)
9 3l2o_B F-box only protein 4; s 93.5 0.013 4.5E-07 55.6 -0.1 35 4-39 5-39 (312)
10 3lif_A Putative diguanylate cy 24.7 51 0.0018 26.8 3.1 29 178-207 56-84 (254)
No 1
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.02 E-value=1.8e-06 Score=59.39 Aligned_cols=38 Identities=39% Similarity=0.619 Sum_probs=33.7
Q ss_pred CcCCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814 2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40 (316)
Q Consensus 2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp 40 (316)
+.|..||++++..||..+ |+++|.+|+.|||+|+.++.
T Consensus 7 ~~~~~LP~eil~~I~~~L-~~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 7 VSWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp --CCSSCHHHHHHHHTTS-CGGGHHHHHTTCHHHHHHHT
T ss_pred CCHHHCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhC
Confidence 468999999999999998 58999999999999999875
No 2
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.23 E-value=4.4e-05 Score=66.85 Aligned_cols=39 Identities=26% Similarity=0.475 Sum_probs=36.2
Q ss_pred CcCCCCchHHHHHHHhhccccchhhhhhhhhccccccccc
Q 041814 2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVSQ 41 (316)
Q Consensus 2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp~ 41 (316)
|.+..||+|+++.||+-+ |+++|.+|+.|||+|+.++-.
T Consensus 13 d~~~~lp~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 13 DLITSLPFEISLKIFNYL-QFEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CHHHHSCHHHHHHHHTTS-CHHHHHHHHTTCHHHHHHHTT
T ss_pred CChHHCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcC
Confidence 778889999999999988 999999999999999998754
No 3
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.12 E-value=0.00014 Score=63.91 Aligned_cols=39 Identities=23% Similarity=0.414 Sum_probs=36.1
Q ss_pred CCcCCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814 1 MDHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40 (316)
Q Consensus 1 ~D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp 40 (316)
+|.|+.||+++++.||.-+ |+++|.||+.|||+|+.++.
T Consensus 16 ~d~~~~lp~e~~~~i~~~l-~~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 16 RDFISLLPKELALYVLSFL-EPKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CSTTTSSCHHHHHHHHTTS-CHHHHHHHTTSCHHHHHHHT
T ss_pred CChhHHCCHHHHHHHHHhC-CHHHHHHHHHHhHHHHhhcC
Confidence 4899999999999999988 79999999999999998874
No 4
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.02 E-value=0.00022 Score=66.34 Aligned_cols=37 Identities=30% Similarity=0.642 Sum_probs=34.2
Q ss_pred cCCCCchHHHHHHHhhccccchhh-hhhhhhcccccccc
Q 041814 3 HFDQLPDALILLIFSSVSDVKTLI-RCRSVSKRFNSLVS 40 (316)
Q Consensus 3 ~Fd~LPD~Lll~IfnKi~D~KtL~-RC~~VSKrf~sLVp 40 (316)
....|||+|++.||..+ ++++|. ||+.|||+|+.|+.
T Consensus 50 ~~~~LP~ell~~Il~~L-p~~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 50 YLAELPEPLLLRVLAEL-PATELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CTTSSCHHHHHHHHHTS-CHHHHHHTGGGTCHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHcC-CHHHHHHHHHHHhHHHHHHhc
Confidence 56789999999999998 789999 99999999999974
No 5
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=96.80 E-value=0.0003 Score=64.60 Aligned_cols=37 Identities=16% Similarity=0.154 Sum_probs=30.3
Q ss_pred CcCCCCchHHHHHHHhhccccchhhhhhhhhcccccc
Q 041814 2 DHFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSL 38 (316)
Q Consensus 2 D~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sL 38 (316)
|.|+.|||+++..||..+.+.+.+.+|+.|||||+.+
T Consensus 4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~ 40 (594)
T 2p1m_B 4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40 (594)
T ss_dssp ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999999987
No 6
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=96.67 E-value=0.00025 Score=62.51 Aligned_cols=38 Identities=29% Similarity=0.388 Sum_probs=34.9
Q ss_pred CcCCCCchH----HHHHHHhhccccchhhhhhhhhcccccccc
Q 041814 2 DHFDQLPDA----LILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40 (316)
Q Consensus 2 D~Fd~LPD~----Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp 40 (316)
|.+..||++ +++.||.-+ |+++|.||+.|||+|+.++.
T Consensus 9 d~~~~lp~e~~~~~~~~i~~~l-~~~~l~~~~~v~~~w~~~~~ 50 (435)
T 1p22_A 9 DFITALPARGLDHIAENILSYL-DAKSLCAAELVCKEWYRVTS 50 (435)
T ss_dssp CHHHHTGGGTCHHHHHHHHTTC-CHHHHHHHHHHCHHHHHHHH
T ss_pred ChHHHCCcchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhc
Confidence 788899999 999999887 79999999999999998874
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=96.15 E-value=0.0015 Score=55.85 Aligned_cols=37 Identities=41% Similarity=0.661 Sum_probs=33.3
Q ss_pred cCCCCchHHHHHHHhhccccchhhhhhhhhcccccccc
Q 041814 3 HFDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLVS 40 (316)
Q Consensus 3 ~Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLVp 40 (316)
.|+.|||+++..||..+ +.+.+.+|+.|||||+.++.
T Consensus 8 ~~~~LP~eil~~If~~L-~~~d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 8 SWDSLPDELLLGIFSCL-CLPELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp CSSSSCHHHHHHHHTTS-CHHHHHHTTSSCHHHHHHHT
T ss_pred ChhhCCHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999988 55689999999999999983
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.53 E-value=0.0029 Score=58.25 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=32.4
Q ss_pred CCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814 6 QLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV 39 (316)
Q Consensus 6 ~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV 39 (316)
.|||+++..||..+.+.+.+.+|+.|||||+.+.
T Consensus 15 ~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~ 48 (592)
T 3ogk_B 15 ATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID 48 (592)
T ss_dssp CCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence 6999999999999999999999999999999884
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=93.48 E-value=0.013 Score=55.59 Aligned_cols=35 Identities=26% Similarity=0.334 Sum_probs=31.7
Q ss_pred CCCCchHHHHHHHhhccccchhhhhhhhhccccccc
Q 041814 4 FDQLPDALILLIFSSVSDVKTLIRCRSVSKRFNSLV 39 (316)
Q Consensus 4 Fd~LPD~Lll~IfnKi~D~KtL~RC~~VSKrf~sLV 39 (316)
||.||+++++.||+-+ ++|.|.||+.|||+|+.++
T Consensus 5 l~~LP~ei~l~IlsfL-~p~DL~~l~~vcr~Wr~la 39 (312)
T 3l2o_B 5 LTRLPIDVQLYILSFL-SPHDLCQLGSTNHYWNETV 39 (312)
T ss_dssp HHHSCHHHHHHHHHTS-CHHHHHHHHTTCHHHHHHH
T ss_pred hHhCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh
Confidence 6889999999999877 5777999999999999876
No 10
>3lif_A Putative diguanylate cyclase (ggdef) with PAS/PAC; PDC fold, signaling protein; HET: CIT; 2.70A {Rhodopseudomonas palustris}
Probab=24.74 E-value=51 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=25.3
Q ss_pred hhHHHHHHhhcccccceeeeeecCCCceEE
Q 041814 178 RHFMLKEIVGDHHEMESLLLVDRDGEGTVV 207 (316)
Q Consensus 178 RHyLL~~Ii~dH~~lesLvltDadgQG~l~ 207 (316)
-+-+|+++.+.+|.+.++.+.|+||+ ...
T Consensus 56 ~~~~L~~~~~~~~~~~~i~i~d~~G~-~~~ 84 (254)
T 3lif_A 56 FNERLRALADNLPQLSDVAILDADGQ-LTY 84 (254)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECTTSB-EEE
T ss_pred HHHHHHHHHhcCCccceEEEECCCCC-Eec
Confidence 46688999999999999999999999 554
Done!