Query 041815
Match_columns 475
No_of_seqs 369 out of 1818
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 10:55:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041815.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041815hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100 Molecular chaperones G 100.0 1.5E-97 3E-102 691.3 38.7 462 6-471 35-514 (663)
2 KOG0102 Molecular chaperones m 100.0 5.9E-80 1.3E-84 593.5 32.1 454 6-470 26-501 (640)
3 PTZ00186 heat shock 70 kDa pre 100.0 6.2E-78 1.4E-82 631.2 49.4 452 6-467 26-498 (657)
4 PTZ00009 heat shock 70 kDa pro 100.0 5.8E-77 1.3E-81 629.4 51.8 448 6-453 3-468 (653)
5 PRK13410 molecular chaperone D 100.0 3.2E-76 7E-81 621.2 49.8 451 7-468 2-474 (668)
6 PTZ00400 DnaK-type molecular c 100.0 4.1E-75 8.9E-80 614.8 49.1 438 6-454 40-499 (663)
7 PRK13411 molecular chaperone D 100.0 5.1E-75 1.1E-79 613.9 48.0 437 7-454 2-460 (653)
8 PLN03184 chloroplast Hsp70; Pr 100.0 8.6E-74 1.9E-78 604.9 48.6 436 7-453 39-496 (673)
9 KOG0101 Molecular chaperones H 100.0 3.4E-75 7.4E-80 583.6 35.0 468 1-469 1-486 (620)
10 PRK00290 dnaK molecular chaper 100.0 3.3E-73 7.2E-78 600.9 49.4 434 7-453 2-457 (627)
11 TIGR01991 HscA Fe-S protein as 100.0 1.8E-72 4E-77 589.6 48.0 443 9-469 1-461 (599)
12 CHL00094 dnaK heat shock prote 100.0 4.6E-72 1E-76 590.3 49.2 435 7-452 2-458 (621)
13 COG0443 DnaK Molecular chapero 100.0 1.6E-72 3.4E-77 582.6 43.5 435 6-470 4-457 (579)
14 TIGR02350 prok_dnaK chaperone 100.0 7E-72 1.5E-76 589.0 48.0 432 8-452 1-454 (595)
15 PRK05183 hscA chaperone protei 100.0 2.2E-71 4.7E-76 582.6 47.5 427 7-454 19-462 (616)
16 PF00012 HSP70: Hsp70 protein; 100.0 1E-69 2.2E-74 577.8 44.2 395 9-407 1-398 (602)
17 KOG0103 Molecular chaperones H 100.0 1.7E-70 3.6E-75 543.5 31.7 396 8-406 2-402 (727)
18 PRK01433 hscA chaperone protei 100.0 3.7E-67 8.1E-72 545.7 43.4 405 7-454 19-440 (595)
19 KOG0104 Molecular chaperones G 100.0 2.1E-64 4.6E-69 501.0 33.9 395 7-405 22-433 (902)
20 PRK11678 putative chaperone; P 100.0 4.5E-57 9.7E-62 454.7 40.2 337 9-384 2-448 (450)
21 PRK13928 rod shape-determining 100.0 4.5E-41 9.7E-46 331.2 33.8 307 10-384 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.4E-40 3.1E-45 326.5 33.6 306 8-381 5-324 (335)
23 PRK13927 rod shape-determining 100.0 4.4E-38 9.6E-43 310.3 32.9 306 8-383 6-324 (334)
24 TIGR00904 mreB cell shape dete 100.0 2.8E-37 6.1E-42 304.0 32.9 305 10-383 5-327 (333)
25 PRK13930 rod shape-determining 100.0 8.7E-37 1.9E-41 301.4 32.9 308 9-384 10-329 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 100.0 5.1E-35 1.1E-39 280.5 22.9 307 8-382 2-320 (326)
27 TIGR02529 EutJ ethanolamine ut 100.0 1.8E-32 3.8E-37 255.3 24.3 203 118-379 36-238 (239)
28 COG1077 MreB Actin-like ATPase 100.0 6.2E-32 1.3E-36 248.8 27.4 310 8-385 7-333 (342)
29 PRK15080 ethanolamine utilizat 100.0 1.2E-29 2.6E-34 240.5 27.0 202 121-381 66-267 (267)
30 PRK09472 ftsA cell division pr 99.9 1E-25 2.2E-30 227.6 24.2 197 158-383 167-388 (420)
31 TIGR01174 ftsA cell division p 99.9 9.3E-26 2E-30 225.4 22.0 195 156-380 157-371 (371)
32 COG0849 ftsA Cell division ATP 99.9 1.4E-22 2.9E-27 199.5 24.0 199 157-384 165-381 (418)
33 cd00012 ACTIN Actin; An ubiqui 99.8 7.1E-19 1.5E-23 176.2 18.0 300 9-383 1-347 (371)
34 smart00268 ACTIN Actin. ACTIN 99.8 3.1E-18 6.8E-23 171.7 18.0 298 8-383 2-347 (373)
35 COG4820 EutJ Ethanolamine util 99.8 1.3E-18 2.8E-23 149.2 8.0 197 126-381 76-272 (277)
36 PTZ00280 Actin-related protein 99.7 6.2E-16 1.3E-20 156.7 23.5 226 144-382 103-383 (414)
37 PRK13917 plasmid segregation p 99.7 2.3E-15 5E-20 148.0 25.4 206 146-386 115-339 (344)
38 PF00022 Actin: Actin; InterP 99.6 3.5E-15 7.6E-20 150.8 16.4 310 7-382 4-366 (393)
39 PTZ00004 actin-2; Provisional 99.6 2.6E-14 5.6E-19 143.0 22.4 215 143-382 101-351 (378)
40 PTZ00452 actin; Provisional 99.6 2.8E-14 6.1E-19 142.2 22.1 215 143-382 100-348 (375)
41 PTZ00281 actin; Provisional 99.6 1.4E-14 3.1E-19 144.7 18.8 215 143-382 101-349 (376)
42 TIGR01175 pilM type IV pilus a 99.6 1.1E-13 2.4E-18 137.5 22.7 179 156-381 142-347 (348)
43 PTZ00466 actin-like protein; P 99.6 1.4E-13 3E-18 137.4 22.3 215 143-382 106-353 (380)
44 TIGR03739 PRTRC_D PRTRC system 99.6 6.2E-14 1.3E-18 137.1 19.5 207 142-381 101-318 (320)
45 PF11104 PilM_2: Type IV pilus 99.6 3.2E-14 6.9E-19 140.5 14.3 203 129-381 92-339 (340)
46 PF06406 StbA: StbA protein; 99.5 5.7E-13 1.2E-17 129.9 12.8 174 172-378 141-316 (318)
47 KOG0679 Actin-related protein 99.4 3.6E-11 7.7E-16 113.6 19.1 95 144-248 107-202 (426)
48 COG4972 PilM Tfp pilus assembl 99.3 3.3E-10 7.2E-15 105.7 20.7 156 158-358 150-311 (354)
49 COG5277 Actin and related prot 99.3 2E-10 4.3E-15 115.5 19.3 193 9-249 8-205 (444)
50 TIGR00241 CoA_E_activ CoA-subs 99.3 2.9E-10 6.4E-15 107.1 18.0 170 175-380 73-248 (248)
51 PRK10719 eutA reactivating fac 99.2 1.3E-09 2.9E-14 107.7 16.8 197 146-387 91-326 (475)
52 TIGR03192 benz_CoA_bzdQ benzoy 99.1 2.6E-08 5.7E-13 93.8 20.6 180 175-383 106-288 (293)
53 TIGR03286 methan_mark_15 putat 99.1 1.8E-08 3.9E-13 98.5 19.5 181 175-382 220-402 (404)
54 TIGR02259 benz_CoA_red_A benzo 98.9 2.5E-08 5.4E-13 96.4 15.7 179 175-381 249-432 (432)
55 TIGR02261 benz_CoA_red_D benzo 98.9 1.1E-07 2.4E-12 88.4 19.3 178 176-381 80-262 (262)
56 COG1924 Activator of 2-hydroxy 98.9 1.1E-07 2.4E-12 90.7 19.4 192 157-383 198-390 (396)
57 KOG0676 Actin and related prot 98.9 2.3E-08 5E-13 97.2 14.5 222 144-382 100-345 (372)
58 PF07649 C1_3: C1-like domain; 98.9 3.5E-10 7.7E-15 68.5 -0.2 29 444-472 1-30 (30)
59 PF07520 SrfB: Virulence facto 98.7 2.6E-06 5.7E-11 91.4 21.9 366 10-382 252-833 (1002)
60 PF08841 DDR: Diol dehydratase 98.7 3.3E-07 7.2E-12 83.8 12.5 192 164-380 103-328 (332)
61 PRK13317 pantothenate kinase; 98.6 9E-06 2E-10 77.3 21.6 48 335-382 223-273 (277)
62 PF03107 C1_2: C1 domain; Int 98.5 9.3E-08 2E-12 57.7 2.2 29 444-472 1-30 (30)
63 PF06277 EutA: Ethanolamine ut 98.4 2E-06 4.4E-11 85.4 11.3 205 146-387 88-324 (473)
64 KOG0677 Actin-related protein 98.3 7.1E-06 1.5E-10 74.1 10.8 228 142-386 100-364 (389)
65 KOG0680 Actin-related protein 98.2 0.00015 3.2E-09 67.9 18.0 102 142-246 92-198 (400)
66 TIGR00555 panK_eukar pantothen 97.9 0.0018 3.9E-08 61.4 20.1 47 333-379 229-278 (279)
67 COG1070 XylB Sugar (pentulose 97.8 0.0058 1.2E-07 63.8 23.8 51 334-386 401-451 (502)
68 PF01869 BcrAD_BadFG: BadF/Bad 97.8 0.0096 2.1E-07 56.9 23.6 72 307-381 196-271 (271)
69 cd02340 ZZ_NBR1_like Zinc fing 97.8 9.5E-06 2.1E-10 53.3 1.9 30 445-474 2-32 (43)
70 KOG0797 Actin-related protein 97.7 0.00027 5.8E-09 70.0 11.2 121 117-247 196-322 (618)
71 COG4457 SrfB Uncharacterized p 97.7 0.016 3.5E-07 59.6 23.5 81 297-383 743-846 (1014)
72 COG4819 EutA Ethanolamine util 97.5 0.00057 1.2E-08 64.3 9.0 220 146-407 90-342 (473)
73 PF02782 FGGY_C: FGGY family o 97.4 0.0003 6.5E-09 63.8 5.5 75 307-383 121-196 (198)
74 KOG0681 Actin-related protein 97.1 0.0054 1.2E-07 61.6 11.7 122 121-248 94-216 (645)
75 PF14574 DUF4445: Domain of un 97.1 0.019 4.1E-07 57.6 15.6 60 295-355 289-348 (412)
76 PRK11031 guanosine pentaphosph 97.1 0.013 2.8E-07 60.9 14.9 78 159-241 94-171 (496)
77 cd02339 ZZ_Mind_bomb Zinc fing 97.1 0.00026 5.6E-09 46.9 1.5 29 445-473 2-32 (45)
78 COG1069 AraB Ribulose kinase [ 97.0 0.013 2.8E-07 59.4 13.0 187 198-387 269-482 (544)
79 PRK15027 xylulokinase; Provisi 97.0 0.0022 4.8E-08 66.7 7.9 53 334-387 386-438 (484)
80 TIGR01315 5C_CHO_kinase FGGY-f 96.9 0.0025 5.4E-08 67.2 8.1 86 300-387 409-494 (541)
81 PF14450 FtsA: Cell division p 96.9 0.0016 3.6E-08 53.8 4.8 45 199-249 1-56 (120)
82 PLN02669 xylulokinase 96.8 0.0043 9.3E-08 65.5 8.4 72 309-383 421-492 (556)
83 TIGR00744 ROK_glcA_fam ROK fam 96.8 0.32 7E-06 47.5 21.1 46 168-215 96-141 (318)
84 PRK10854 exopolyphosphatase; P 96.7 0.019 4.1E-07 60.0 12.8 78 159-241 99-176 (513)
85 cd02249 ZZ Zinc finger, ZZ typ 96.6 0.0011 2.4E-08 44.5 1.5 31 444-474 1-32 (46)
86 PRK04123 ribulokinase; Provisi 96.6 0.0062 1.4E-07 64.4 7.8 52 334-387 438-490 (548)
87 PRK00047 glpK glycerol kinase; 96.5 0.007 1.5E-07 63.2 7.8 52 334-387 403-454 (498)
88 PTZ00294 glycerol kinase-like 96.5 0.0079 1.7E-07 62.9 7.8 51 335-387 407-457 (504)
89 PF13941 MutL: MutL protein 96.4 0.014 3E-07 59.2 8.8 41 9-55 2-44 (457)
90 TIGR03706 exo_poly_only exopol 96.4 0.056 1.2E-06 52.4 12.8 74 161-241 90-164 (300)
91 TIGR01311 glycerol_kin glycero 96.4 0.0079 1.7E-07 62.7 7.4 52 334-387 399-450 (493)
92 TIGR02628 fuculo_kin_coli L-fu 96.4 0.0086 1.9E-07 62.0 7.5 51 334-386 393-443 (465)
93 TIGR01312 XylB D-xylulose kina 96.4 0.0093 2E-07 62.0 7.8 52 334-387 390-441 (481)
94 TIGR01234 L-ribulokinase L-rib 96.4 0.0094 2E-07 62.8 7.9 52 334-387 435-487 (536)
95 COG0248 GppA Exopolyphosphatas 96.4 0.037 8E-07 56.9 11.7 93 124-217 54-149 (492)
96 PRK10331 L-fuculokinase; Provi 96.3 0.01 2.2E-07 61.5 7.6 82 301-387 358-440 (470)
97 TIGR01314 gntK_FGGY gluconate 96.3 0.012 2.6E-07 61.6 7.8 52 334-387 401-452 (505)
98 PLN02295 glycerol kinase 96.2 0.012 2.5E-07 61.8 7.6 52 334-387 412-463 (512)
99 TIGR02627 rhamnulo_kin rhamnul 96.1 0.012 2.6E-07 60.7 7.0 51 334-387 387-437 (454)
100 PRK10939 autoinducer-2 (AI-2) 96.1 0.016 3.4E-07 61.0 7.5 52 334-387 409-460 (520)
101 KOG2517 Ribulose kinase and re 95.9 0.022 4.8E-07 58.0 7.4 75 311-387 390-465 (516)
102 PRK09557 fructokinase; Reviewe 95.8 2 4.3E-05 41.6 22.4 44 169-214 96-139 (301)
103 PRK10640 rhaB rhamnulokinase; 95.8 0.021 4.6E-07 59.1 6.9 51 334-387 375-425 (471)
104 smart00842 FtsA Cell division 95.7 0.017 3.7E-07 51.8 5.1 31 156-186 156-186 (187)
105 KOG2531 Sugar (pentulose and h 95.6 0.044 9.6E-07 54.2 7.8 55 326-382 434-488 (545)
106 cd02341 ZZ_ZZZ3 Zinc finger, Z 95.6 0.0061 1.3E-07 41.0 1.4 30 444-473 1-34 (48)
107 PRK09698 D-allose kinase; Prov 95.5 2.5 5.4E-05 40.9 22.7 49 334-382 236-295 (302)
108 PF00130 C1_1: Phorbol esters/ 95.4 0.0087 1.9E-07 41.4 1.5 41 433-473 1-44 (53)
109 PTZ00288 glucokinase 1; Provis 95.2 0.95 2.1E-05 45.6 16.0 21 6-26 25-45 (405)
110 PRK13310 N-acetyl-D-glucosamin 94.9 4 8.7E-05 39.5 24.4 40 167-207 94-133 (303)
111 KOG0681 Actin-related protein 94.7 0.042 9.1E-07 55.4 4.6 68 316-383 538-614 (645)
112 PF07318 DUF1464: Protein of u 94.6 0.5 1.1E-05 45.9 11.5 72 311-387 241-319 (343)
113 PRK13321 pantothenate kinase; 94.5 3.3 7.1E-05 39.1 17.1 19 9-27 2-20 (256)
114 PRK09604 UGMP family protein; 94.5 5.3 0.00012 39.3 20.0 65 317-386 242-311 (332)
115 cd02335 ZZ_ADA2 Zinc finger, Z 94.5 0.023 5E-07 38.6 1.7 30 444-473 1-32 (49)
116 PF02541 Ppx-GppA: Ppx/GppA ph 94.2 0.09 2E-06 50.6 5.9 75 162-241 77-151 (285)
117 PRK09605 bifunctional UGMP fam 94.1 9.1 0.0002 40.4 21.3 66 317-387 233-303 (535)
118 COG0533 QRI7 Metal-dependent p 94.0 5.9 0.00013 38.5 17.3 230 118-379 41-307 (342)
119 COG1548 Predicted transcriptio 93.9 0.55 1.2E-05 43.3 9.7 71 129-217 77-150 (330)
120 TIGR03723 bact_gcp putative gl 93.8 5.2 0.00011 39.0 17.2 57 317-378 247-308 (314)
121 cd02344 ZZ_HERC2 Zinc finger, 93.8 0.037 8.1E-07 36.6 1.5 28 445-472 2-31 (45)
122 PLN02666 5-oxoprolinase 93.8 0.83 1.8E-05 52.6 13.1 78 300-380 453-531 (1275)
123 PRK09585 anmK anhydro-N-acetyl 93.7 0.62 1.3E-05 46.1 10.5 71 309-383 264-338 (365)
124 PRK12408 glucokinase; Provisio 93.4 3.6 7.8E-05 40.6 15.6 41 167-207 106-156 (336)
125 cd02342 ZZ_UBA_plant Zinc fing 93.3 0.045 9.8E-07 35.4 1.3 28 445-472 2-31 (43)
126 PTZ00340 O-sialoglycoprotein e 93.1 7.6 0.00017 38.2 16.9 205 142-379 70-309 (345)
127 COG1940 NagC Transcriptional r 92.7 10 0.00022 36.8 22.5 35 173-207 109-143 (314)
128 smart00291 ZnF_ZZ Zinc-binding 92.7 0.069 1.5E-06 35.3 1.5 30 444-473 5-35 (44)
129 PF02685 Glucokinase: Glucokin 92.5 0.97 2.1E-05 44.0 9.9 122 119-250 37-182 (316)
130 PRK14101 bifunctional glucokin 92.5 2.4 5.3E-05 45.8 13.9 21 5-25 16-36 (638)
131 PF08735 DUF1786: Putative pyr 92.3 1.6 3.4E-05 40.7 10.3 73 140-215 111-185 (254)
132 cd02338 ZZ_PCMF_like Zinc fing 92.3 0.074 1.6E-06 36.1 1.3 28 445-472 2-31 (49)
133 PRK00292 glk glucokinase; Prov 92.0 13 0.00028 36.3 22.0 43 166-208 87-139 (316)
134 cd00029 C1 Protein kinase C co 92.0 0.093 2E-06 35.5 1.6 39 435-473 3-44 (50)
135 COG2377 Predicted molecular ch 91.9 2.6 5.7E-05 41.2 11.8 53 332-384 288-344 (371)
136 COG1521 Pantothenate kinase ty 91.9 4.6 0.0001 37.7 13.0 43 304-346 182-224 (251)
137 PF03702 UPF0075: Uncharacteri 91.7 0.52 1.1E-05 46.7 7.1 75 307-384 260-338 (364)
138 cd02337 ZZ_CBP Zinc finger, ZZ 91.6 0.072 1.6E-06 34.6 0.6 28 444-472 1-29 (41)
139 PTZ00297 pantothenate kinase; 91.5 24 0.00053 41.8 21.1 74 307-381 1365-1444(1452)
140 COG0554 GlpK Glycerol kinase [ 91.3 0.64 1.4E-05 46.9 7.1 81 301-386 371-452 (499)
141 PRK14878 UGMP family protein; 91.2 16 0.00034 35.8 18.4 92 142-240 65-159 (323)
142 cd02334 ZZ_dystrophin Zinc fin 90.9 0.12 2.7E-06 34.9 1.3 29 445-473 2-32 (49)
143 PF00569 ZZ: Zinc finger, ZZ t 90.9 0.049 1.1E-06 36.4 -0.7 28 444-471 5-34 (46)
144 PF14450 FtsA: Cell division p 90.5 0.17 3.6E-06 41.8 2.0 21 9-29 1-21 (120)
145 COG3426 Butyrate kinase [Energ 90.2 3.4 7.4E-05 38.8 10.3 48 332-379 294-344 (358)
146 KOG2708 Predicted metalloprote 90.2 8 0.00017 35.2 12.3 63 311-379 236-300 (336)
147 PF02543 CmcH_NodU: Carbamoylt 90.0 22 0.00047 35.4 18.8 82 300-386 132-216 (360)
148 PF01968 Hydantoinase_A: Hydan 89.7 0.34 7.4E-06 46.7 3.7 69 309-380 216-284 (290)
149 smart00109 C1 Protein kinase C 89.2 0.15 3.2E-06 34.3 0.6 33 441-473 9-43 (49)
150 TIGR00329 gcp_kae1 metallohydr 89.0 17 0.00037 35.3 15.0 94 142-240 69-166 (305)
151 TIGR03281 methan_mark_12 putat 88.8 2.8 6.1E-05 39.9 8.8 94 300-400 222-324 (326)
152 COG2192 Predicted carbamoyl tr 88.6 33 0.00072 35.6 21.4 81 301-386 256-338 (555)
153 COG5026 Hexokinase [Carbohydra 88.1 18 0.00039 36.3 14.1 31 159-189 184-216 (466)
154 PLN02920 pantothenate kinase 1 88.1 3.5 7.6E-05 40.9 9.4 49 333-381 296-350 (398)
155 KOG0678 Actin-related protein 87.4 7 0.00015 37.5 10.4 99 144-245 107-207 (415)
156 cd02343 ZZ_EF Zinc finger, ZZ 87.0 0.27 5.9E-06 32.9 0.7 28 445-472 2-30 (48)
157 COG0837 Glk Glucokinase [Carbo 86.5 31 0.00068 33.0 15.5 85 166-251 91-187 (320)
158 PRK00976 hypothetical protein; 86.1 5.9 0.00013 38.5 9.6 60 334-400 263-324 (326)
159 KOG4582 Uncharacterized conser 85.7 0.36 7.8E-06 46.0 1.1 30 444-473 153-184 (278)
160 COG0145 HyuA N-methylhydantoin 84.9 1.5 3.4E-05 47.0 5.5 43 174-217 256-298 (674)
161 PRK03011 butyrate kinase; Prov 84.4 4.3 9.3E-05 40.3 8.1 51 334-387 295-348 (358)
162 TIGR00143 hypF [NiFe] hydrogen 82.4 3.5 7.5E-05 44.9 7.0 49 334-382 658-711 (711)
163 PF00370 FGGY_N: FGGY family o 82.2 1.4 3E-05 41.3 3.5 20 8-27 1-20 (245)
164 TIGR03722 arch_KAE1 universal 82.2 52 0.0011 32.1 18.3 91 142-240 66-160 (322)
165 KOG1385 Nucleoside phosphatase 81.2 3.1 6.6E-05 41.3 5.4 75 118-215 154-231 (453)
166 PLN02362 hexokinase 80.8 32 0.0007 35.8 13.0 35 156-190 205-241 (509)
167 smart00732 YqgFc Likely ribonu 79.9 1.8 4E-05 33.8 3.0 18 8-25 2-19 (99)
168 cd02345 ZZ_dah Zinc finger, ZZ 79.2 1.1 2.3E-05 30.4 1.2 28 445-472 2-31 (49)
169 PTZ00107 hexokinase; Provision 79.2 34 0.00073 35.3 12.5 36 156-191 194-231 (464)
170 PLN02914 hexokinase 78.9 30 0.00066 35.9 12.1 54 156-213 205-260 (490)
171 PF03630 Fumble: Fumble ; Int 78.0 13 0.00028 36.6 8.8 48 334-381 287-340 (341)
172 PRK13329 pantothenate kinase; 77.1 65 0.0014 30.2 14.5 17 9-25 3-19 (249)
173 PLN02405 hexokinase 77.1 45 0.00098 34.7 12.7 53 156-212 205-259 (497)
174 KOG4236 Serine/threonine prote 76.9 0.36 7.8E-06 49.1 -2.3 42 433-474 146-190 (888)
175 PRK07058 acetate kinase; Provi 76.9 28 0.00061 34.8 10.7 47 309-359 297-344 (396)
176 PRK10939 autoinducer-2 (AI-2) 76.2 2.4 5.3E-05 44.6 3.5 21 7-27 3-23 (520)
177 COG4012 Uncharacterized protei 76.1 21 0.00046 33.3 8.8 67 174-245 207-273 (342)
178 COG2441 Predicted butyrate kin 75.6 21 0.00046 33.6 8.8 55 333-387 272-336 (374)
179 PRK00047 glpK glycerol kinase; 75.4 2.7 5.9E-05 43.9 3.6 20 7-26 5-24 (498)
180 PF03652 UPF0081: Uncharacteri 75.2 3.1 6.7E-05 35.0 3.1 20 8-27 2-21 (135)
181 PTZ00294 glycerol kinase-like 74.4 2.8 6.1E-05 43.9 3.4 21 7-27 2-22 (504)
182 TIGR03123 one_C_unchar_1 proba 73.2 4.1 8.9E-05 39.6 3.9 21 197-217 128-148 (318)
183 KOG0797 Actin-related protein 73.1 1.5 3.2E-05 44.4 0.9 69 317-386 510-592 (618)
184 cd06007 R3H_DEXH_helicase R3H 71.2 15 0.00031 26.0 5.2 30 145-174 16-45 (59)
185 KOG2707 Predicted metalloprote 71.2 1.1E+02 0.0024 30.1 19.6 221 121-359 79-330 (405)
186 PLN02596 hexokinase-like 71.0 68 0.0015 33.3 12.2 55 156-214 205-261 (490)
187 PRK04123 ribulokinase; Provisi 70.5 4.3 9.3E-05 43.0 3.7 19 7-25 3-21 (548)
188 PRK13311 N-acetyl-D-glucosamin 70.1 52 0.0011 30.8 10.7 38 169-207 96-133 (256)
189 PRK10331 L-fuculokinase; Provi 69.9 4.4 9.6E-05 42.0 3.5 20 7-26 2-21 (470)
190 KOG1369 Hexokinase [Carbohydra 68.9 1.5E+02 0.0032 30.7 14.9 59 155-217 190-251 (474)
191 PRK05082 N-acetylmannosamine k 68.4 23 0.0005 33.9 8.0 48 334-381 233-286 (291)
192 PRK00109 Holliday junction res 68.3 6.4 0.00014 33.2 3.6 22 6-27 3-24 (138)
193 PF13832 zf-HC5HC2H_2: PHD-zin 67.8 2.6 5.7E-05 33.9 1.1 33 441-474 53-87 (110)
194 PRK15027 xylulokinase; Provisi 67.6 4.9 0.00011 41.9 3.3 19 8-26 1-19 (484)
195 PRK13331 pantothenate kinase; 67.1 8.2 0.00018 36.2 4.3 28 1-28 1-28 (251)
196 TIGR01314 gntK_FGGY gluconate 66.1 5.5 0.00012 41.7 3.4 20 8-27 1-20 (505)
197 TIGR02628 fuculo_kin_coli L-fu 65.8 5.5 0.00012 41.2 3.3 20 8-27 2-21 (465)
198 TIGR01234 L-ribulokinase L-rib 65.6 6.2 0.00013 41.7 3.7 18 8-25 2-19 (536)
199 PLN02295 glycerol kinase 65.2 5.9 0.00013 41.6 3.4 19 8-26 1-19 (512)
200 TIGR01311 glycerol_kin glycero 65.1 5.9 0.00013 41.4 3.3 19 8-26 2-20 (493)
201 COG0816 Predicted endonuclease 63.9 7.6 0.00016 32.8 3.1 21 7-27 2-22 (141)
202 cd02640 R3H_NRF R3H domain of 63.0 28 0.00062 24.6 5.4 30 145-174 17-46 (60)
203 TIGR01315 5C_CHO_kinase FGGY-f 62.0 7.2 0.00016 41.2 3.3 18 9-26 2-19 (541)
204 cd00529 RuvC_resolvase Hollida 61.5 12 0.00025 32.3 4.0 25 8-32 1-27 (154)
205 PF13771 zf-HC5HC2H: PHD-like 60.9 3.8 8.2E-05 31.5 0.8 30 444-474 37-68 (90)
206 KOG0193 Serine/threonine prote 60.5 4.3 9.4E-05 42.3 1.3 42 432-473 178-219 (678)
207 PF00349 Hexokinase_1: Hexokin 60.3 23 0.0005 32.2 5.9 28 196-223 62-90 (206)
208 PLN02669 xylulokinase 59.8 9 0.00019 40.7 3.6 22 6-27 7-28 (556)
209 PF00628 PHD: PHD-finger; Int 59.4 7.6 0.00017 26.1 2.0 28 446-473 2-30 (51)
210 COG4012 Uncharacterized protei 57.8 25 0.00053 32.9 5.5 73 198-277 2-97 (342)
211 smart00249 PHD PHD zinc finger 57.7 8.3 0.00018 24.9 2.0 27 446-472 2-29 (47)
212 PF00814 Peptidase_M22: Glycop 56.5 1.8E+02 0.0039 27.5 15.0 40 314-358 206-245 (268)
213 COG2971 Predicted N-acetylgluc 56.3 1.9E+02 0.0042 27.8 23.9 66 313-386 228-294 (301)
214 PRK00039 ruvC Holliday junctio 56.2 10 0.00022 33.1 2.7 19 7-25 2-20 (164)
215 KOG3507 DNA-directed RNA polym 55.7 4.8 0.0001 27.9 0.5 30 438-467 15-47 (62)
216 PF13909 zf-H2C2_5: C2H2-type 54.4 6.3 0.00014 21.8 0.8 9 458-466 1-9 (24)
217 TIGR02707 butyr_kinase butyrat 51.1 46 0.001 33.0 6.8 46 334-379 293-341 (351)
218 PRK13318 pantothenate kinase; 51.0 17 0.00037 34.2 3.6 20 9-28 2-21 (258)
219 PF03604 DNA_RNApol_7kD: DNA d 49.7 12 0.00025 22.8 1.4 24 444-467 1-27 (32)
220 PF14574 DUF4445: Domain of un 49.0 46 0.00099 33.7 6.4 47 307-353 56-102 (412)
221 cd02646 R3H_G-patch R3H domain 48.9 47 0.001 23.2 4.7 40 131-173 4-43 (58)
222 cd02639 R3H_RRM R3H domain of 48.8 40 0.00086 23.9 4.2 30 145-174 17-46 (60)
223 PRK13326 pantothenate kinase; 48.1 23 0.0005 33.5 3.9 25 4-28 3-27 (262)
224 TIGR01319 glmL_fam conserved h 46.2 96 0.0021 31.8 8.1 47 202-250 1-48 (463)
225 PRK11199 tyrA bifunctional cho 46.1 2.3E+02 0.0049 28.4 10.9 16 235-250 13-28 (374)
226 PRK00180 acetate kinase A/prop 45.7 67 0.0015 32.4 6.9 48 309-359 301-349 (402)
227 COG5026 Hexokinase [Carbohydra 45.7 85 0.0018 31.8 7.4 29 195-223 73-102 (466)
228 PF02075 RuvC: Crossover junct 45.3 34 0.00074 29.2 4.2 24 9-32 1-26 (149)
229 KOG2872 Uroporphyrinogen decar 45.3 59 0.0013 30.9 5.9 69 300-373 219-288 (359)
230 cd02641 R3H_Smubp-2_like R3H d 45.0 96 0.0021 21.9 5.8 29 146-174 18-46 (60)
231 KOG2517 Ribulose kinase and re 44.8 36 0.00079 35.3 5.0 20 6-25 5-24 (516)
232 PF00480 ROK: ROK family; Int 44.3 1E+02 0.0022 26.7 7.4 91 119-214 31-134 (179)
233 KOG1705 Uncharacterized conser 43.7 6.4 0.00014 29.9 -0.4 21 444-464 56-76 (110)
234 PF00349 Hexokinase_1: Hexokin 43.6 21 0.00045 32.4 2.8 33 157-189 169-204 (206)
235 KOG0695 Serine/threonine prote 43.4 7.5 0.00016 37.6 -0.1 41 432-472 130-173 (593)
236 PF03660 PHF5: PHF5-like prote 42.9 7.4 0.00016 30.5 -0.2 20 444-463 56-76 (106)
237 PRK13320 pantothenate kinase; 41.6 30 0.00066 32.3 3.7 21 8-28 3-23 (244)
238 KOG0825 PHD Zn-finger protein 40.6 12 0.00026 40.1 0.8 29 444-472 216-246 (1134)
239 KOG4236 Serine/threonine prote 40.2 9.3 0.0002 39.4 -0.0 31 444-474 279-312 (888)
240 TIGR00250 RNAse_H_YqgF RNAse H 40.1 19 0.00042 30.0 1.8 18 10-27 1-18 (130)
241 PLN02377 3-ketoacyl-CoA syntha 38.2 88 0.0019 32.7 6.7 55 305-359 164-219 (502)
242 PRK14890 putative Zn-ribbon RN 37.3 25 0.00053 24.7 1.7 21 444-466 37-57 (59)
243 TIGR00016 ackA acetate kinase. 37.1 1.2E+02 0.0025 30.7 7.0 47 310-359 306-353 (404)
244 PF01968 Hydantoinase_A: Hydan 37.0 27 0.00057 33.6 2.5 42 172-215 54-95 (290)
245 PLN02902 pantothenate kinase 36.3 1.9E+02 0.0041 32.2 8.9 49 333-382 345-400 (876)
246 KOG1369 Hexokinase [Carbohydra 36.2 2.3E+02 0.0051 29.2 9.1 26 195-220 84-109 (474)
247 COG2888 Predicted Zn-ribbon RN 35.7 15 0.00033 25.7 0.4 21 444-466 39-59 (61)
248 PF13917 zf-CCHC_3: Zinc knuck 34.9 18 0.00039 23.5 0.7 17 444-461 5-21 (42)
249 TIGR01319 glmL_fam conserved h 34.8 31 0.00068 35.2 2.7 45 327-371 382-432 (463)
250 COG0020 UppS Undecaprenyl pyro 34.8 2.8E+02 0.0061 25.9 8.8 71 270-350 122-203 (245)
251 COG4126 Hydantoin racemase [Am 34.4 1.3E+02 0.0029 27.4 6.3 41 143-189 70-110 (230)
252 COG0533 QRI7 Metal-dependent p 34.3 1E+02 0.0022 30.3 5.9 45 307-351 44-88 (342)
253 PF04848 Pox_A22: Poxvirus A22 34.0 64 0.0014 27.4 4.0 18 8-25 2-19 (143)
254 PLN03173 chalcone synthase; Pr 33.9 1.5E+02 0.0033 29.8 7.5 49 311-359 100-149 (391)
255 PLN03172 chalcone synthase fam 33.8 1.5E+02 0.0032 30.0 7.4 51 309-359 98-149 (393)
256 PF08392 FAE1_CUT1_RppA: FAE1/ 33.7 1.1E+02 0.0024 29.3 6.0 49 311-359 81-130 (290)
257 PLN03170 chalcone synthase; Pr 32.2 1.3E+02 0.0028 30.5 6.7 51 309-359 102-153 (401)
258 PF07282 OrfB_Zn_ribbon: Putat 32.2 38 0.00083 24.4 2.2 28 442-469 27-58 (69)
259 TIGR02627 rhamnulo_kin rhamnul 32.1 23 0.0005 36.5 1.3 16 10-25 1-16 (454)
260 PF13119 DUF3973: Domain of un 31.7 10 0.00022 23.9 -0.8 16 457-473 1-16 (41)
261 cd02336 ZZ_RSC8 Zinc finger, Z 31.4 32 0.00068 22.8 1.4 30 444-473 1-31 (45)
262 COG4393 Predicted membrane pro 31.4 20 0.00044 34.4 0.7 24 445-468 336-362 (405)
263 COG5418 Predicted secreted pro 30.9 2.3E+02 0.005 24.0 6.6 69 270-342 30-104 (164)
264 TIGR01312 XylB D-xylulose kina 30.8 32 0.00069 35.7 2.1 17 10-26 1-17 (481)
265 smart00659 RPOLCX RNA polymera 30.8 31 0.00067 22.7 1.3 24 444-467 3-29 (44)
266 PF13941 MutL: MutL protein 30.7 1.2E+02 0.0027 31.1 6.2 47 199-245 2-49 (457)
267 PTZ00340 O-sialoglycoprotein e 30.4 89 0.0019 30.9 5.0 45 308-352 44-88 (345)
268 PHA00626 hypothetical protein 30.4 41 0.00089 23.3 1.8 14 455-468 21-34 (59)
269 PRK14878 UGMP family protein; 30.1 70 0.0015 31.3 4.3 44 308-351 39-82 (323)
270 cd01741 GATase1_1 Subgroup of 29.7 91 0.002 27.5 4.7 50 332-387 44-101 (188)
271 PLN02854 3-ketoacyl-CoA syntha 29.5 95 0.0021 32.5 5.3 54 306-359 181-235 (521)
272 PLN00130 succinate dehydrogena 29.5 6.9 0.00015 33.9 -2.5 21 7-27 57-77 (213)
273 TIGR00671 baf pantothenate kin 29.4 60 0.0013 30.3 3.5 19 10-28 2-20 (243)
274 TIGR03722 arch_KAE1 universal 29.4 88 0.0019 30.6 4.8 43 309-351 41-83 (322)
275 PF03309 Pan_kinase: Type III 29.3 67 0.0015 29.0 3.7 21 9-29 1-21 (206)
276 PF01150 GDA1_CD39: GDA1/CD39 29.0 73 0.0016 32.6 4.4 61 156-216 103-183 (434)
277 COG2410 Predicted nuclease (RN 28.7 1.1E+02 0.0023 26.7 4.4 31 8-38 2-33 (178)
278 PLN03168 chalcone synthase; Pr 28.6 1.9E+02 0.0041 29.2 7.1 52 309-361 97-149 (389)
279 TIGR00329 gcp_kae1 metallohydr 28.6 85 0.0018 30.4 4.6 45 308-352 43-87 (305)
280 PF01548 DEDD_Tnp_IS110: Trans 28.3 95 0.0021 25.9 4.3 20 9-28 1-20 (144)
281 COG4020 Uncharacterized protei 28.2 2.9E+02 0.0062 25.9 7.4 53 331-386 265-321 (332)
282 PRK13324 pantothenate kinase; 28.1 67 0.0015 30.3 3.6 20 9-28 2-21 (258)
283 TIGR00269 conserved hypothetic 27.7 30 0.00066 27.5 1.0 22 442-465 79-100 (104)
284 PF13842 Tnp_zf-ribbon_2: DDE_ 27.7 63 0.0014 19.6 2.2 15 456-470 15-29 (32)
285 PF08746 zf-RING-like: RING-li 27.4 13 0.00028 24.3 -0.9 26 446-472 1-28 (43)
286 PRK13321 pantothenate kinase; 27.4 2.4E+02 0.0053 26.4 7.3 46 199-245 2-47 (256)
287 TIGR01198 pgl 6-phosphoglucono 27.3 1.4E+02 0.003 27.6 5.5 45 307-356 6-50 (233)
288 COG1069 AraB Ribulose kinase [ 27.2 56 0.0012 34.0 3.0 21 6-26 2-22 (544)
289 TIGR03723 bact_gcp putative gl 27.0 96 0.0021 30.2 4.6 65 309-375 45-115 (314)
290 cd01745 GATase1_2 Subgroup of 27.0 89 0.0019 27.8 4.1 47 335-387 54-120 (189)
291 PF00091 Tubulin: Tubulin/FtsZ 26.5 93 0.002 28.3 4.2 47 311-361 104-156 (216)
292 PTZ00107 hexokinase; Provision 26.3 2E+02 0.0044 29.7 6.9 24 196-219 73-96 (464)
293 COG1940 NagC Transcriptional r 25.8 2.9E+02 0.0063 26.6 7.8 56 196-251 5-60 (314)
294 PF02801 Ketoacyl-synt_C: Beta 24.9 69 0.0015 25.9 2.7 46 314-359 24-71 (119)
295 PLN02914 hexokinase 24.8 1.9E+02 0.0042 30.1 6.4 24 195-218 93-116 (490)
296 PRK06895 putative anthranilate 24.4 1.1E+02 0.0025 27.1 4.3 46 335-387 44-92 (190)
297 PRK07515 3-oxoacyl-(acyl carri 24.3 75 0.0016 31.7 3.4 38 310-347 266-303 (372)
298 PF09297 zf-NADH-PPase: NADH p 23.9 53 0.0011 19.7 1.4 20 446-465 6-29 (32)
299 PF07722 Peptidase_C26: Peptid 23.9 1.1E+02 0.0023 28.0 4.0 52 335-387 59-126 (217)
300 PF10080 DUF2318: Predicted me 23.3 45 0.00097 26.5 1.2 26 444-469 36-64 (102)
301 PRK15080 ethanolamine utilizat 23.2 2.1E+02 0.0046 27.0 6.1 44 195-238 22-65 (267)
302 cd00327 cond_enzymes Condensin 23.2 3E+02 0.0065 25.2 7.2 43 317-359 11-55 (254)
303 TIGR00067 glut_race glutamate 23.2 1.5E+02 0.0032 27.9 4.9 41 334-378 172-212 (251)
304 PF07754 DUF1610: Domain of un 23.1 69 0.0015 18.1 1.6 11 455-465 14-24 (24)
305 COG0554 GlpK Glycerol kinase [ 23.1 78 0.0017 32.5 3.1 21 6-26 4-24 (499)
306 KOG4443 Putative transcription 23.1 41 0.0009 35.5 1.2 32 442-473 67-99 (694)
307 PF00815 Histidinol_dh: Histid 23.1 1.5E+02 0.0032 30.0 5.1 48 143-190 137-185 (412)
308 PRK14840 undecaprenyl pyrophos 22.7 6.4E+02 0.014 23.6 9.6 59 281-349 139-208 (250)
309 PF01255 Prenyltransf: Putativ 22.7 4.9E+02 0.011 23.8 8.2 58 279-347 111-179 (223)
310 cd01744 GATase1_CPSase Small c 22.6 1.3E+02 0.0028 26.4 4.2 48 334-387 39-89 (178)
311 PRK09604 UGMP family protein; 22.6 1.6E+02 0.0035 28.9 5.3 64 310-375 48-117 (332)
312 PF05378 Hydant_A_N: Hydantoin 22.5 82 0.0018 27.7 2.9 18 10-27 2-19 (176)
313 PF13831 PHD_2: PHD-finger; PD 22.2 18 0.00038 22.7 -1.0 17 456-472 3-19 (36)
314 TIGR02707 butyr_kinase butyrat 22.2 1.7E+02 0.0036 29.1 5.3 29 199-227 2-30 (351)
315 PLN02362 hexokinase 22.1 2.8E+02 0.006 29.1 7.0 25 195-219 93-117 (509)
316 PF00814 Peptidase_M22: Glycop 22.1 73 0.0016 30.2 2.7 69 309-379 25-99 (268)
317 PRK14828 undecaprenyl pyrophos 22.1 6.7E+02 0.014 23.6 9.5 58 281-348 141-213 (256)
318 PLN02192 3-ketoacyl-CoA syntha 21.5 2.1E+02 0.0046 29.9 6.0 54 306-359 169-223 (511)
319 cd01400 6PGL 6PGL: 6-Phosphogl 21.4 1.3E+02 0.0028 27.5 4.1 44 309-357 3-46 (219)
320 PF01182 Glucosamine_iso: Gluc 21.3 2.2E+02 0.0049 25.4 5.6 42 311-357 3-44 (199)
321 PRK13318 pantothenate kinase; 21.3 3.8E+02 0.0081 25.1 7.3 17 199-215 2-18 (258)
322 cd02198 YjgH_like YjgH belongs 21.0 1.8E+02 0.0039 23.2 4.4 48 312-359 33-82 (111)
323 PRK12879 3-oxoacyl-(acyl carri 20.9 2.2E+02 0.0047 27.5 5.9 47 309-358 219-265 (325)
324 COG2069 CdhD CO dehydrogenase/ 20.6 2.4E+02 0.0051 27.1 5.5 65 145-210 252-326 (403)
325 TIGR01865 cas_Csn1 CRISPR-asso 20.5 83 0.0018 35.1 3.0 20 8-27 2-21 (805)
326 PRK12419 riboflavin synthase s 20.2 1E+02 0.0023 26.6 2.9 60 312-381 23-82 (158)
327 PF05378 Hydant_A_N: Hydantoin 20.2 2.8E+02 0.006 24.4 5.8 21 201-221 3-23 (176)
328 smart00732 YqgFc Likely ribonu 20.1 2.4E+02 0.0052 21.4 4.9 21 198-218 2-22 (99)
329 PF14446 Prok-RING_1: Prokaryo 20.1 57 0.0012 22.5 1.0 30 444-473 6-37 (54)
No 1
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-97 Score=691.34 Aligned_cols=462 Identities=57% Similarity=0.868 Sum_probs=434.2
Q ss_pred CCCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
...+||||||||||||+++++|++++|.|++|+|-+||.|+|.+.+|++|++|++|...||++++++.||++|+.|+++.
T Consensus 35 ~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~ 114 (663)
T KOG0100|consen 35 LGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKS 114 (663)
T ss_pred cceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeC-CceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCK-GEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKD 164 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~-g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~ 164 (475)
++++++.+||+++ +.++++++.|... |+.+.++|+++++|+|.++++.|++++|..++++|+|||+||+++|||++++
T Consensus 115 vq~Dik~~Pfkvv-~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKD 193 (663)
T KOG0100|consen 115 VQKDIKFLPFKVV-NKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKD 193 (663)
T ss_pred hhhhhhcCceEEE-cCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcc
Confidence 9999999999999 7799999999987 6688899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHH
Q 041815 165 AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNH 244 (475)
Q Consensus 165 a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 244 (475)
|..+|||+++++|+||+|||++|++++... +.+++|+|+||||||+|++.+.+|.|+|++++++.++||.+||++++++
T Consensus 194 AGtIAgLnV~RIiNePTaAAIAYGLDKk~g-EknilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~ 272 (663)
T KOG0100|consen 194 AGTIAGLNVVRIINEPTAAAIAYGLDKKDG-EKNILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEY 272 (663)
T ss_pred cceeccceEEEeecCccHHHHHhcccccCC-cceEEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHH
Confidence 999999999999999999999999998775 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 041815 245 FIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMC 324 (475)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~ 324 (475)
+.+.|+++.+.+++.+.+++++|++++|+||+.||+..++.++|+++++|.|++-.+||+.||++--+++.....+++++
T Consensus 273 fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kv 352 (663)
T KOG0100|consen 273 FIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKV 352 (663)
T ss_pred HHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccCC
Q 041815 325 LRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPNY 404 (475)
Q Consensus 325 l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~~ 404 (475)
|++++++..+|+.|+||||++|||.||+.|+++|+|+++...+||+||||+|||.+|+.|||+. .+.+++++||+|++
T Consensus 353 l~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee--~t~divLLDv~pLt 430 (663)
T KOG0100|consen 353 LEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEE--DTGDIVLLDVNPLT 430 (663)
T ss_pred HhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccccc--CcCcEEEEeecccc
Confidence 9999999999999999999999999999999999999999999999999999999999999974 48999999999999
Q ss_pred CCccc----------ccccccc-cccCC-CCCCCCCccccccce-----eccCcccccccccCCCCCCceeecccCCCCC
Q 041815 405 NSPLE----------LKTTTSF-AAQNL-PSRGGHKSHQAHDLQ-----LKNHKTLSKCNGCKRPAFGLMYRCELCNFNL 467 (475)
Q Consensus 405 ~~~~~----------~~~~~~~-~~~~~-~~~~~~~~~~~h~l~-----~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~ 467 (475)
.|+.. -++..|. ++|.+ ++.++|+...+.++. .++|..|++||+.++|-+++.-+..+..|.+
T Consensus 431 lGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFev 510 (663)
T KOG0100|consen 431 LGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEV 510 (663)
T ss_pred ceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEE
Confidence 77532 2233333 34544 677888777776665 5567788999999999999999999998887
Q ss_pred CcCC
Q 041815 468 HIPC 471 (475)
Q Consensus 468 ~~~~ 471 (475)
+.+-
T Consensus 511 Dang 514 (663)
T KOG0100|consen 511 DANG 514 (663)
T ss_pred ccCc
Confidence 7653
No 2
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-80 Score=593.55 Aligned_cols=454 Identities=45% Similarity=0.697 Sum_probs=427.8
Q ss_pred CCCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEE-cCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCCh
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAF-TDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDV 84 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~-~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (475)
...++|||+|||||++++.+++.+.++.|.+|.|.+||+|+| .++++++|..|+++...||.|+++.-||++|++++++
T Consensus 26 ~~~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ 105 (640)
T KOG0102|consen 26 KGKVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDP 105 (640)
T ss_pred CCceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCH
Confidence 456999999999999999999999999999999999999999 4669999999999999999999999999999999999
Q ss_pred hhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 041815 85 SVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKD 164 (475)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~ 164 (475)
.++++.+..||+++..+++..+++. .|+. ++|.++.+++|.+++++|+++++..+..+|+|||+||++.||+++++
T Consensus 106 evq~~~k~vpyKiVk~~ngdaw~e~--~G~~--~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkd 181 (640)
T KOG0102|consen 106 EVQKDIKQVPYKIVKASNGDAWVEA--RGKQ--YSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKD 181 (640)
T ss_pred HHHHHHHhCCcceEEccCCcEEEEe--CCeE--ecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHh
Confidence 9999999999999998888888776 5655 99999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHH
Q 041815 165 AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNH 244 (475)
Q Consensus 165 a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 244 (475)
|.++||++++++++||+|||++|+++++. ...++|+|+||||||++++.+.++.|++.++.++.++||++||..++++
T Consensus 182 ag~iagl~vlrvineptaaalaygld~k~--~g~iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~ 259 (640)
T KOG0102|consen 182 AGQIAGLNVLRVINEPTAAALAYGLDKKE--DGVIAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRF 259 (640)
T ss_pred hhhhccceeeccCCccchhHHhhcccccC--CCceEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHH
Confidence 99999999999999999999999999877 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHH
Q 041815 245 FIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKH 320 (475)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (475)
+..+|+...++++..++++++||++++|++|.+||....+.+.+|++..+ .++.+++||.+|++++.+++++.+++
T Consensus 260 ~v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p 339 (640)
T KOG0102|consen 260 IVSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEP 339 (640)
T ss_pred HHHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhH
Confidence 99999999999999999999999999999999999999999999998876 56889999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEec
Q 041815 321 VDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDV 400 (475)
Q Consensus 321 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~ 400 (475)
++++|++|++..+||+.|+|+||.+|+|.+++.+++.| +..+....||+++||.|||++++.++|+ |++++|+||
T Consensus 340 ~~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~ge----VkdvlLLdV 414 (640)
T KOG0102|consen 340 CKKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSGE----VKDVLLLDV 414 (640)
T ss_pred HHHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhcc----ccceeeeec
Confidence 99999999999999999999999999999999999999 7788999999999999999999999997 899999999
Q ss_pred ccCCCCccc----------ccccccc-cccCC-CCCCCCCccccccce-----eccCcccccccccCCCCCCceeecccC
Q 041815 401 NPNYNSPLE----------LKTTTSF-AAQNL-PSRGGHKSHQAHDLQ-----LKNHKTLSKCNGCKRPAFGLMYRCELC 463 (475)
Q Consensus 401 ~p~~~~~~~----------~~~~~~~-~~~~~-~~~~~~~~~~~h~l~-----~~~~~~~~~c~~c~~~~~~~~~~~~~~ 463 (475)
+|++++... -+++.++ ++|.+ ++.++|+.+++.++| .++|+.++.+.+-++|-+++.+..++.
T Consensus 415 tpLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieV 494 (640)
T KOG0102|consen 415 TPLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEV 494 (640)
T ss_pred chHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeE
Confidence 999976432 2445555 45555 799999999999998 457899999999999999999999999
Q ss_pred CCCCCcC
Q 041815 464 NFNLHIP 470 (475)
Q Consensus 464 ~~~~~~~ 470 (475)
-|||...
T Consensus 495 tfDIdan 501 (640)
T KOG0102|consen 495 TFDIDAN 501 (640)
T ss_pred EEeecCC
Confidence 9999753
No 3
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=6.2e-78 Score=631.24 Aligned_cols=452 Identities=40% Similarity=0.661 Sum_probs=399.8
Q ss_pred CCCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
...+||||||||||+||++++++++++.|..|.+.+||+|+|.++++++|..|+.+...+|.++++++||+||++++++.
T Consensus 26 ~~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 26 QGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred cceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
++...+.+||+++.++++...+.. ..+ ..++|+++.+++|++|++.|++++|.++.++|||||+||++.||+++++|
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~-~~~--~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~A 182 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQD-GNG--KQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDA 182 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEe-CCC--eEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHH
Confidence 999999999999988777766553 223 45999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.|||+++++++||+|||++|+.+... +.+++|||+||||||+|++++.++.++++++.++.++||++||+.|++|+
T Consensus 183 a~~AGl~v~rlInEPtAAAlayg~~~~~--~~~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~ 260 (657)
T PTZ00186 183 GTIAGLNVIRVVNEPTAAALAYGMDKTK--DSLIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYI 260 (657)
T ss_pred HHHcCCCeEEEEcChHHHHHHHhccCCC--CCEEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHH
Confidence 9999999999999999999999987654 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKHV 321 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (475)
.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+ .++.+.|||++|+++++++++++..++
T Consensus 261 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v 340 (657)
T PTZ00186 261 LEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPC 340 (657)
T ss_pred HHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999999999988876532 357899999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecc
Q 041815 322 DMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVN 401 (475)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~ 401 (475)
+++|++++++..+|+.|+||||+||||.|++.|++.| +.++....||++|||+|||++|+++++. ++++.+.|++
T Consensus 341 ~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~f-g~~~~~~~nPdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~ 415 (657)
T PTZ00186 341 KQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFF-QKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVT 415 (657)
T ss_pred HHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHh-CCCccccCCCchHHHHhHHHHHHHhccc----cCceEEEeec
Confidence 9999999999999999999999999999999999999 5667788999999999999999999985 6889999999
Q ss_pred cCCCCcccc----------cccccc-cccCC-CCCCCCCccccccceec-----cCcccccccccCCCCCCceeecccCC
Q 041815 402 PNYNSPLEL----------KTTTSF-AAQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAFGLMYRCELCN 464 (475)
Q Consensus 402 p~~~~~~~~----------~~~~~~-~~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~~~~~~~~~~~ 464 (475)
|++++.... +++.|. ....+ +..++|+...+|.++++ +|..++.|..-++|.....-...+..
T Consensus 416 p~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vt 495 (657)
T PTZ00186 416 PLSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVT 495 (657)
T ss_pred cccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEE
Confidence 999874311 122222 12333 56788888888888854 45567888887777654433333333
Q ss_pred CCC
Q 041815 465 FNL 467 (475)
Q Consensus 465 ~~~ 467 (475)
|.+
T Consensus 496 f~i 498 (657)
T PTZ00186 496 FDI 498 (657)
T ss_pred EEE
Confidence 433
No 4
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5.8e-77 Score=629.42 Aligned_cols=448 Identities=63% Similarity=0.968 Sum_probs=402.6
Q ss_pred CCCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
...+||||||||||+||++.+|.++++.|..|+|++||+|+|.++++++|+.|+.+...+|.++++++||+||+.++++.
T Consensus 3 ~~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 82 (653)
T PTZ00009 3 KGPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSV 82 (653)
T ss_pred cccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
++...+.+||.++.++++.+.+.+.+.+....++|+++++++|++|++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 162 (653)
T PTZ00009 83 VQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDA 162 (653)
T ss_pred HhhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHH
Confidence 99999999999998889999999988887778999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.||++++++++||+|||++|+.......+.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+
T Consensus 163 a~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 163 GTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999999876543467899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc-cCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKT-EKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMC 324 (475)
Q Consensus 246 ~~~~~~~~-~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~ 324 (475)
.++|.+++ +.++..+++.+.+|+.+||++|+.||.+..+.+.++.++++.++.+.|||++|+++++++++++.++++++
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998776 36778889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccCC
Q 041815 325 LRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPNY 404 (475)
Q Consensus 325 l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~~ 404 (475)
|++++++..+|+.|+|+||+||+|+|++.|++.|++.++....||++|||+|||++|+++++...++++++.+.|++|++
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~s 402 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLS 402 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccc
Confidence 99999999999999999999999999999999997678888999999999999999999998655778999999999999
Q ss_pred CCccccc----------cccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCC
Q 041815 405 NSPLELK----------TTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPA 453 (475)
Q Consensus 405 ~~~~~~~----------~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~ 453 (475)
++..... +..|.. ...+ +..++|+...++.++.. ++..++.|..-+.|-
T Consensus 403 lgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~ 468 (653)
T PTZ00009 403 LGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPP 468 (653)
T ss_pred cCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCC
Confidence 8743211 111111 1122 34566776667777644 344556666655543
No 5
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.2e-76 Score=621.16 Aligned_cols=451 Identities=41% Similarity=0.652 Sum_probs=395.2
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEc-CCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
..+||||||||||+||++.+|.+.+|.|..|.+++||+|+|. ++++++|..|+.+...+|.++++++||+||+++.+
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~-- 79 (668)
T PRK13410 2 GRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE-- 79 (668)
T ss_pred CcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--
Confidence 479999999999999999999999999999999999999996 57899999999999999999999999999999865
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
++.....+||.+..++++...+.+...+ +.++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 157 (668)
T PRK13410 80 LDPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDA 157 (668)
T ss_pred hHHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHH
Confidence 4556678999998888777666654333 56999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.|||+++++++||+|||++|+.+... +.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+
T Consensus 158 a~~AGl~v~~li~EPtAAAlayg~~~~~--~~~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l 235 (668)
T PRK13410 158 GRIAGLEVERILNEPTAAALAYGLDRSS--SQTVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWL 235 (668)
T ss_pred HHHcCCCeEEEecchHHHHHHhccccCC--CCEEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHH
Confidence 9999999999999999999999987654 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKHV 321 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (475)
.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++...|||++|+++++++++++.+++
T Consensus 236 ~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i 315 (668)
T PRK13410 236 AEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPV 315 (668)
T ss_pred HHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999998888888899999999999999999999999999999877543 367889999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecc
Q 041815 322 DMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVN 401 (475)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~ 401 (475)
+++|+++++++.+|+.|+||||+||||+|++.|++.| +.++....||++|||+|||++|+++++. ++++++.|++
T Consensus 316 ~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~l~Dv~ 390 (668)
T PRK13410 316 KRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVT 390 (668)
T ss_pred HHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhccc----ccceeEEeec
Confidence 9999999999999999999999999999999999999 6778888999999999999999999985 6899999999
Q ss_pred cCCCCcccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCCCCceeecccCC
Q 041815 402 PNYNSPLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAFGLMYRCELCN 464 (475)
Q Consensus 402 p~~~~~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~~~~~~~~~~~ 464 (475)
|++++.... ++..|.+ +..+ +..++|+...+|.+++. +|..++.|..-++|-....-...+..
T Consensus 391 p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~ 470 (668)
T PRK13410 391 PLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVA 470 (668)
T ss_pred cccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEE
Confidence 999874321 1122221 2223 35677887788888743 45677888887777554333334444
Q ss_pred CCCC
Q 041815 465 FNLH 468 (475)
Q Consensus 465 ~~~~ 468 (475)
|.+.
T Consensus 471 f~id 474 (668)
T PRK13410 471 FDID 474 (668)
T ss_pred EEEC
Confidence 4443
No 6
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=4.1e-75 Score=614.79 Aligned_cols=438 Identities=44% Similarity=0.716 Sum_probs=388.2
Q ss_pred CCCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEc-CCcEEecHHHHHhhhhCCCceecccHHhhCCCCCCh
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDV 84 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (475)
+..+||||||||||+||++.+|.++++.|..|+|++||+|+|. ++++++|..|+.+...+|.++++++||++|++++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 3579999999999999999999999999999999999999996 468999999999999999999999999999999999
Q ss_pred hhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 041815 85 SVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKD 164 (475)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~ 164 (475)
.++.....+||.++.++++...+.+ .++ .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~--~~~--~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 195 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEA--QGK--KYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKD 195 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEE--CCE--EECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 9999999999999988877766654 343 599999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHH
Q 041815 165 AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNH 244 (475)
Q Consensus 165 a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 244 (475)
|++.||++++++++||+|||++|+..... +..++|||+||||||+|++++.++.++++++.++..+||++||+.|++|
T Consensus 196 Aa~~AGl~v~~li~EptAAAlay~~~~~~--~~~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~ 273 (663)
T PTZ00400 196 AGKIAGLDVLRIINEPTAAALAFGMDKND--GKTIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNY 273 (663)
T ss_pred HHHHcCCceEEEeCchHHHHHHhccccCC--CcEEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999987654 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHH
Q 041815 245 FIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKH 320 (475)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (475)
+..+|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++|+++++.++
T Consensus 274 l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~ 353 (663)
T PTZ00400 274 LIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEP 353 (663)
T ss_pred HHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999988888888899999999999999999999999888888876543 46789999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEec
Q 041815 321 VDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDV 400 (475)
Q Consensus 321 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~ 400 (475)
++++|+++++.+.+|+.|+||||+||+|+|++.|++.| +.++....||+++||+|||++|+++++. ++++.+.|+
T Consensus 354 i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv 428 (663)
T PTZ00400 354 CEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDV 428 (663)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHh-CCCcccCCCCccceeeccHHHHHhhcCC----ccceEEEec
Confidence 99999999999999999999999999999999999999 5678889999999999999999999985 588999999
Q ss_pred ccCCCCcccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCCC
Q 041815 401 NPNYNSPLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAF 454 (475)
Q Consensus 401 ~p~~~~~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~ 454 (475)
+|++++.... ++..|.. ...+ +..++|+...++.+++. ++..++.+..-+.|..
T Consensus 429 ~p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~ 499 (663)
T PTZ00400 429 TPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPA 499 (663)
T ss_pred cccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCC
Confidence 9999874311 1111211 1222 45567776777777654 3445566666555443
No 7
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=5.1e-75 Score=613.85 Aligned_cols=437 Identities=46% Similarity=0.730 Sum_probs=385.9
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcC-CcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-KECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
..+||||||||||+||++.+|.+.++.|..|+|++||+|+|.+ +++++|..|+.+...+|.++++++||++|++++++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~ 81 (653)
T PRK13411 2 GKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE 81 (653)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh
Confidence 3699999999999999999999999999999999999999964 589999999999999999999999999999998864
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
...+++||.++..+++...+.+ .+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 82 --~~~~~~~~~~v~~~~~~~~~~i--~~~--~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 155 (653)
T PRK13411 82 --EERSRVPYTCVKGRDDTVNVQI--RGR--NYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDA 155 (653)
T ss_pred --HHhhcCCceEEecCCCceEEEE--CCE--EECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHH
Confidence 3467899999887777655554 453 4999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.|||+++++++||+|||++|+..... .+.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+
T Consensus 156 a~~AGl~v~~li~EPtAAAl~y~~~~~~-~~~~vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 156 GTIAGLEVLRIINEPTAAALAYGLDKQD-QEQLILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred HHHcCCCeEEEecchHHHHHHhcccccC-CCCEEEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 9999999999999999999999987644 367899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKHV 321 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (475)
.++|.++.+.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++|+++++.+++
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888999999999999999999999999999988876432 467889999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecc
Q 041815 322 DMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVN 401 (475)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~ 401 (475)
+++|++++++..+|+.|+||||+||+|+|++.|++.|++.++..+.||++|||+|||++|+++++. ++++.+.|++
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~----~~~~~~~dv~ 390 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVT 390 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCC----ccceeeeecc
Confidence 999999999999999999999999999999999999976788889999999999999999999985 6899999999
Q ss_pred cCCCCcccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCCC
Q 041815 402 PNYNSPLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAF 454 (475)
Q Consensus 402 p~~~~~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~ 454 (475)
|++++.... ++..|.. .+.+ +..++|+...+|.++.. +|..++.|..-++|..
T Consensus 391 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~ 460 (653)
T PRK13411 391 PLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPA 460 (653)
T ss_pred cceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCC
Confidence 999774321 1111221 1222 45677777778887754 3556677777666644
No 8
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=8.6e-74 Score=604.88 Aligned_cols=436 Identities=44% Similarity=0.689 Sum_probs=384.5
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEc-CCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
..+||||||||||+||++.+|.+++++|..|++++||+|+|. ++++++|..|+.+...+|.++++++||+||+++.+
T Consensus 39 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d-- 116 (673)
T PLN03184 39 EKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE-- 116 (673)
T ss_pred CCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--
Confidence 469999999999999999999999999999999999999996 46899999999999999999999999999999876
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
++.....+||+++.++++...+.+...++ .++|+++++++|++|++.|+.+++..+.++|||||+||++.||+++++|
T Consensus 117 ~~~~~~~~~~~v~~~~~~~v~~~~~~~~~--~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~A 194 (673)
T PLN03184 117 VDEESKQVSYRVVRDENGNVKLDCPAIGK--QFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDA 194 (673)
T ss_pred hhhhhhcCCeEEEecCCCcEEEEEecCCe--EEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 45667789999998887777766655554 4999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.||++++++++||+|||++|+..... +..+||||+||||||+|++++.++.++++++.++.++||++||+.|++|+
T Consensus 195 a~~AGl~v~~li~EPtAAAlayg~~~~~--~~~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 195 GRIAGLEVLRIINEPTAASLAYGFEKKS--NETILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred HHHCCCCeEEEeCcHHHHHHHhhcccCC--CCEEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHH
Confidence 9999999999999999999999987654 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEecccc----CccceEEEcHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYE----GIDFSSVMTRARFEELNMDLFRKCIKHV 321 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (475)
.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++.+.|||++|+++++++++++.+++
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999999999999999998886642 2468889999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecc
Q 041815 322 DMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVN 401 (475)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~ 401 (475)
+++|++++++..+|+.|+|+||+||+|.|++.|++.| +.++....||++|||+|||++|+++++. ++++.+.|++
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~~----~~~~~~~dv~ 427 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAGE----VSDIVLLDVT 427 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhccC----ccceEEEecc
Confidence 9999999999999999999999999999999999999 6778888999999999999999999984 6789999999
Q ss_pred cCCCCcccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCC
Q 041815 402 PNYNSPLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPA 453 (475)
Q Consensus 402 p~~~~~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~ 453 (475)
|++++.... ++..|.+ ...+ +..++|+...++.++.. +|..++.|..-+.|.
T Consensus 428 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~ 496 (673)
T PLN03184 428 PLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPP 496 (673)
T ss_pred cccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCC
Confidence 999874311 1112221 1222 45677877777777743 344556666555543
No 9
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-75 Score=583.62 Aligned_cols=468 Identities=61% Similarity=0.904 Sum_probs=432.1
Q ss_pred CCCCCCCCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCC
Q 041815 1 MDGKEAAPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRR 80 (475)
Q Consensus 1 M~~~~~~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~ 80 (475)
|.....+.+||||||||+++++++.++.++++.|.+|++.+||+++|.++++++|.+|..+...||.++++++||++|+.
T Consensus 1 ~~~~~~~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~ 80 (620)
T KOG0101|consen 1 KLATPESVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRF 80 (620)
T ss_pred CCCccccceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCcc
Confidence 44555678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHH
Q 041815 81 FGDVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQ 160 (475)
Q Consensus 81 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~ 160 (475)
++++.++..+++|||.+..+.++.+.+.+.++++.+.++|+++.++.|.++++.|+.+++..+..+|+|||+||++.||+
T Consensus 81 f~d~~v~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~ 160 (620)
T KOG0101|consen 81 FDDPEVQSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRA 160 (620)
T ss_pred ccchhhHhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHH
Confidence 99999999999999999977788999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHH
Q 041815 161 ATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNR 240 (475)
Q Consensus 161 ~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~ 240 (475)
++++|+.+||++++++++||+|||++|+++++.....+++|+|+||||||+|++.+.+|.+.++++.++.++||.+||+.
T Consensus 161 at~~A~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~ 240 (620)
T KOG0101|consen 161 ATKDAALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNK 240 (620)
T ss_pred HHHHHHHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHH
Confidence 99999999999999999999999999998887667889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHH
Q 041815 241 MVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKH 320 (475)
Q Consensus 241 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (475)
|.+|+..+|+++++.++..+++++.+|+.+||.+|+.||....+++.++++.+|.++...+||.+|++++.+++..+.++
T Consensus 241 l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~ 320 (620)
T KOG0101|consen 241 LVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEP 320 (620)
T ss_pred HHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEec
Q 041815 321 VDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDV 400 (475)
Q Consensus 321 i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~ 400 (475)
+.++|+++.++..+|+.|+||||++|+|.++..++++|+++.+..++||||+||+|||++||+++|.....+.+++++|+
T Consensus 321 v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~ 400 (620)
T KOG0101|consen 321 VEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDV 400 (620)
T ss_pred HHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999987777899999999
Q ss_pred ccCCCCccc----------------cccccccc--ccCCCCCCCCCccccccceeccCcccccccccCCCCCCceeeccc
Q 041815 401 NPNYNSPLE----------------LKTTTSFA--AQNLPSRGGHKSHQAHDLQLKNHKTLSKCNGCKRPAFGLMYRCEL 462 (475)
Q Consensus 401 ~p~~~~~~~----------------~~~~~~~~--~~~~~~~~~~~~~~~h~l~~~~~~~~~~c~~c~~~~~~~~~~~~~ 462 (475)
.|++.|... .+.+..|+ .+++|....+-.+++ ....++|..+++|.+-++|-+.+.-+..+
T Consensus 401 ~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEge-r~~~kdn~~lg~feL~gippaprgvp~Ie 479 (620)
T KOG0101|consen 401 APLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGE-RAMTKDNNLLGKFELTGIPPAPRGVPQIE 479 (620)
T ss_pred ccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEecc-ccccccccccceeeecCCCccccCCccee
Confidence 999876432 22233332 234444444444433 45566777779999999999999988888
Q ss_pred CCCCCCc
Q 041815 463 CNFNLHI 469 (475)
Q Consensus 463 ~~~~~~~ 469 (475)
.-||+..
T Consensus 480 vtfdiD~ 486 (620)
T KOG0101|consen 480 VTFDIDA 486 (620)
T ss_pred EEEecCC
Confidence 8788764
No 10
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.3e-73 Score=600.86 Aligned_cols=434 Identities=47% Similarity=0.757 Sum_probs=383.5
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEc-CCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT-DKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
..+||||||||||++|++.+|.++++.|..|++.+||+|+|. ++++++|..|+.+...+|.++++++||+||++ ++.
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~~ 79 (627)
T PRK00290 2 GKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DEE 79 (627)
T ss_pred CcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--chH
Confidence 369999999999999999999999999999999999999996 67899999999999999999999999999988 566
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
++...+.+||+++.++++...+. ++|. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~p~~~~~~~~~~~~~~--~~~~--~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~A 155 (627)
T PRK00290 80 VQKDIKLVPYKIVKADNGDAWVE--IDGK--KYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDA 155 (627)
T ss_pred HHHHhhcCCeEEEEcCCCceEEE--ECCE--EEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHH
Confidence 78888899999998877766654 4453 5999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.||++++++++||+|||++|+.... .+.++||||+||||||+|++++.++.++++++.++..+||++||+.|++|+
T Consensus 156 a~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 233 (627)
T PRK00290 156 GKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYL 233 (627)
T ss_pred HHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHH
Confidence 999999999999999999999998764 378999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKHV 321 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (475)
.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++++++++.+++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 313 (627)
T PRK00290 234 ADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEPC 313 (627)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 9999999988888899999999999999999999999999998876543 568899999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecc
Q 041815 322 DMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVN 401 (475)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~ 401 (475)
+++|++++++..+|+.|+|+||+||+|+|++.|++.| +.++....||++|||+|||++|+++++. ++++.+.|++
T Consensus 314 ~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~~----~~~~~~~d~~ 388 (627)
T PRK00290 314 KQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVT 388 (627)
T ss_pred HHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcCC----ccceeeeecc
Confidence 9999999999999999999999999999999999999 6778889999999999999999999984 6889999999
Q ss_pred cCCCCcccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCC
Q 041815 402 PNYNSPLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPA 453 (475)
Q Consensus 402 p~~~~~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~ 453 (475)
|++++.... ++..|.. ...+ +..++|+...++.++.. ++..++.|..-+.|.
T Consensus 389 ~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~ 457 (627)
T PRK00290 389 PLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPP 457 (627)
T ss_pred ceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCC
Confidence 998773211 1111111 1122 45567776677777654 344456666655543
No 11
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.8e-72 Score=589.61 Aligned_cols=443 Identities=35% Similarity=0.564 Sum_probs=381.4
Q ss_pred EEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC-cEEecHHHHHhhhhCCCceecccHHhhCCCCCChhhh
Q 041815 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK-ECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSVQ 87 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (475)
+||||||||||+||++.+|+++++.|..|++.+||+|+|.++ ++++|..|+.+...+|.++++++||++|+++.+..
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~-- 78 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIK-- 78 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchh--
Confidence 589999999999999999999999999999999999999754 89999999999999999999999999999887643
Q ss_pred hcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 041815 88 SDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGA 167 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~ 167 (475)
. .+.+||.++..+++...+.+. +. .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|++
T Consensus 79 ~-~~~~~~~~~~~~~~~~~~~~~--~~--~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 79 T-FSILPYRFVDGPGEMVRLRTV--QG--TVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred h-cccCCEEEEEcCCCceEEEeC--CC--EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 2 567899988777777666553 22 489999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHH
Q 041815 168 MAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQ 247 (475)
Q Consensus 168 ~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 247 (475)
.||++++++++||+|||++|+.+... +.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++++.+
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~~--~~~vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKAS--EGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccCC--CCEEEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999987654 7899999999999999999999999999999999999999999999999987
Q ss_pred HHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHh
Q 041815 248 EFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRT 327 (475)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~ 327 (475)
++ +.+...+++.+.+|+.+||++|+.||.+..+.+.++. +|.++.+.|||++|+++++|+++++.++++++|++
T Consensus 232 ~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~ 305 (599)
T TIGR01991 232 QL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--DGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRD 305 (599)
T ss_pred hh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--CCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 3444578899999999999999999999988888874 67889999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccCCCCc
Q 041815 328 GKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPNYNSP 407 (475)
Q Consensus 328 ~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~~~~~ 407 (475)
+++++.+++.|+||||+||+|+|++.|++.| +..+..+.||++|||+|||++|+++++. ++.+++.+.|++|++++.
T Consensus 306 a~~~~~~id~ViLvGGssriP~V~~~l~~~f-~~~~~~~~npdeaVA~GAai~a~~l~~~--~~~~~~~l~dv~p~slgi 382 (599)
T TIGR01991 306 AGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVALGAAIQADLLAGN--RIGNDLLLLDVTPLSLGI 382 (599)
T ss_pred cCCChhhCCEEEEECCcCCChHHHHHHHHHh-CCCCCCCCCCcHHHHHHHHHHHHHhccc--cccCceEEEEeeeeeeEE
Confidence 9999999999999999999999999999999 5667788999999999999999999984 446789999999999774
Q ss_pred ccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCCCCceeecccCCCCCCc
Q 041815 408 LEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAFGLMYRCELCNFNLHI 469 (475)
Q Consensus 408 ~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~ 469 (475)
... ++..|.+ ...+ +..++|+...+|.+++. +|..++.|..-++|........-+..|.+..
T Consensus 383 ~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 461 (599)
T TIGR01991 383 ETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDA 461 (599)
T ss_pred EecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECC
Confidence 211 1112221 1222 45678887778888754 4566788888777754433333344444433
No 12
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=4.6e-72 Score=590.28 Aligned_cols=435 Identities=45% Similarity=0.711 Sum_probs=380.4
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcC-CcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD-KECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
..+||||||||||++|++.+|.++++.|..|.+++||+|+|.+ +++++|..|+.+...+|+++++++||++|+.+++
T Consensus 2 ~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~-- 79 (621)
T CHL00094 2 GKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE-- 79 (621)
T ss_pred CceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--
Confidence 4799999999999999999999999999999999999999964 5799999999999999999999999999998865
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
+....+.+||.+..++++...+.+...+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|
T Consensus 80 ~~~~~~~~~~~v~~~~~g~i~~~~~~~~~--~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~A 157 (621)
T CHL00094 80 ISEEAKQVSYKVKTDSNGNIKIECPALNK--DFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDA 157 (621)
T ss_pred HHhhhhcCCeEEEECCCCCEEEEEecCCe--EEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 55666779999988777776666554443 4899999999999999999999999999999999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.||++++++++||+|||++|+.+... +.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+
T Consensus 158 a~~AGl~v~~li~EptAAAlay~~~~~~--~~~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 158 GKIAGLEVLRIINEPTAASLAYGLDKKN--NETILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred HHHcCCceEEEeccHHHHHHHhccccCC--CCEEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHH
Confidence 9999999999999999999999987654 67899999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEecccc----CccceEEEcHHHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYE----GIDFSSVMTRARFEELNMDLFRKCIKHV 321 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~----~~~~~~~itr~~~~~~~~~~~~~i~~~i 321 (475)
.++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+.. +.++...|||++|+++++++++++..++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999999998888889999999999999999999999999998887653 2467889999999999999999999999
Q ss_pred HHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecc
Q 041815 322 DMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVN 401 (475)
Q Consensus 322 ~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~ 401 (475)
+++|++++++..+++.|+|+||+||+|.|++.|++.| +.++....||++|||+|||++|+++++. ++++.+.|++
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~~pdeava~GAA~~aa~ls~~----~~~~~~~d~~ 390 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVT 390 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHh-CCCcCcCCCchhHHHhhhHHHHHHhcCC----ccceeeeeee
Confidence 9999999999999999999999999999999999999 6778888999999999999999999984 6889999999
Q ss_pred cCCCCcccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCC
Q 041815 402 PNYNSPLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRP 452 (475)
Q Consensus 402 p~~~~~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~ 452 (475)
|++++.... ++..|.. ...+ +..++|+...++.+++. +|..++.+..-+.|
T Consensus 391 ~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~ 458 (621)
T CHL00094 391 PLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIP 458 (621)
T ss_pred ceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCC
Confidence 998774211 1111111 1122 34556666667666644 34445566655444
No 13
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-72 Score=582.56 Aligned_cols=435 Identities=49% Similarity=0.720 Sum_probs=391.8
Q ss_pred CCCEEEEecCCccEEEEEEECC-cEEEEecCCCCcccceEEEEcCC-cEEecHHHHHhhhhCCCceecccHHhhCCCCCC
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHD-RVEIIANDQGNRTTPSYVAFTDK-ECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGD 83 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g-~~~vi~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~ 83 (475)
.+.+||||||||||+||+++++ .+.++.|..|.|.+||+|+|..+ ++++|..|++++..+|.++++.+||++|+...
T Consensus 4 ~~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~- 82 (579)
T COG0443 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN- 82 (579)
T ss_pred CceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC-
Confidence 4689999999999999999988 79999999999999999999865 59999999999999999999999999997611
Q ss_pred hhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 041815 84 VSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATK 163 (475)
Q Consensus 84 ~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~ 163 (475)
...+.+...| +.++|+++++++|++|++.|+.+++..+.++|||||+||++.||++++
T Consensus 83 --------------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~ 140 (579)
T COG0443 83 --------------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATK 140 (579)
T ss_pred --------------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHH
Confidence 1112233444 349999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHH
Q 041815 164 DAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVN 243 (475)
Q Consensus 164 ~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 243 (475)
+|+++|||+++++++||+|||++|+.+... +..++|||+||||||+|++++.++.++++++.++.++||++||.+|.+
T Consensus 141 ~A~~iaGl~vlrlinEPtAAAlayg~~~~~--~~~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~ 218 (579)
T COG0443 141 DAARIAGLNVLRLINEPTAAALAYGLDKGK--EKTVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALID 218 (579)
T ss_pred HHHHHcCCCeEEEecchHHHHHHhHhccCC--CcEEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHH
Confidence 999999999999999999999999999884 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHH
Q 041815 244 HFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDM 323 (475)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~ 323 (475)
++..+|..+.+.++..+++.++||+.+||++|+.||...++.+.++++..+.++..+|||++||+++.+++.++..++.+
T Consensus 219 ~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~ 298 (579)
T COG0443 219 YLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQ 298 (579)
T ss_pred HHHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888888899999999999999999999999999
Q ss_pred HHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccC
Q 041815 324 CLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPN 403 (475)
Q Consensus 324 ~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~ 403 (475)
+|.+++++..+|+.|+|+||++|||.|++.+++.| +.++...+||+++||.|||++|+.+++. +.+++++|++|+
T Consensus 299 al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f-~~~~~~~inpdeava~GAa~qa~~l~~~----~~d~ll~Dv~pl 373 (579)
T COG0443 299 ALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGE----VPDVLLLDVIPL 373 (579)
T ss_pred HHHHcCCChhhCceEEEccceeccHHHHHHHHHHh-CccccccCCccHHHHHHHHHHHHhhcCc----ccCceEEeeeee
Confidence 99999999999999999999999999999999999 5889999999999999999999999996 349999999999
Q ss_pred CCCcccc----------cccccc-cccCC-CCCCCCCcccccccee-----ccCcccccccccCCCCCCceeecccCCCC
Q 041815 404 YNSPLEL----------KTTTSF-AAQNL-PSRGGHKSHQAHDLQL-----KNHKTLSKCNGCKRPAFGLMYRCELCNFN 466 (475)
Q Consensus 404 ~~~~~~~----------~~~~~~-~~~~~-~~~~~~~~~~~h~l~~-----~~~~~~~~c~~c~~~~~~~~~~~~~~~~~ 466 (475)
+.+.... +++.|. ..+.+ ...++++...+|.++. ++++.++.|++-++|-....+.-.+-.|+
T Consensus 374 slgie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~ 453 (579)
T COG0443 374 SLGIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFD 453 (579)
T ss_pred ccccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEec
Confidence 9774322 122222 12223 5778899888999984 45688899999999999888887777777
Q ss_pred CCcC
Q 041815 467 LHIP 470 (475)
Q Consensus 467 ~~~~ 470 (475)
+...
T Consensus 454 iD~~ 457 (579)
T COG0443 454 IDAN 457 (579)
T ss_pred cCCC
Confidence 7654
No 14
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=7e-72 Score=589.05 Aligned_cols=432 Identities=46% Similarity=0.740 Sum_probs=376.4
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC-cEEecHHHHHhhhhCCCceecccHHhhCCCCCChhh
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK-ECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSV 86 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (475)
.+||||||||||++|++.+|.++++.|..|++.+||+|+|.++ ++++|..|+.+...+|+++++++||+||++++ .+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~~--~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRFD--EV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCch--HH
Confidence 4799999999999999999999999999999999999999754 89999999999999999999999999999883 46
Q ss_pred hhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 041815 87 QSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAG 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~ 166 (475)
+...+.+||. +..+++...+.+ .+. .++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++|+
T Consensus 79 ~~~~~~~~~~-v~~~~~~~~~~v--~~~--~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa 153 (595)
T TIGR02350 79 TEEAKRVPYK-VVGDGGDVRVKV--DGK--EYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAG 153 (595)
T ss_pred HHHhhcCCee-EEcCCCceEEEE--CCE--EecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 6777889999 446666655554 453 49999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHH
Q 041815 167 AMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (475)
Q Consensus 167 ~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 246 (475)
+.||++++++++||+|||++|+..... .+.+++|||+||||||+|++++.++.++++++.++..+||++||+.|++|+.
T Consensus 154 ~~AGl~v~~li~EptAAAl~y~~~~~~-~~~~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 154 KIAGLEVLRIINEPTAAALAYGLDKSK-KDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred HHcCCceEEEecchHHHHHHHhhcccC-CCcEEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHH
Confidence 999999999999999999999987632 3789999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccC----ccceEEEcHHHHHHHHHHHHHHHHHHHH
Q 041815 247 QEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEG----IDFSSVMTRARFEELNMDLFRKCIKHVD 322 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~----~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (475)
++|.++++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+ .++.+.|||++|+++++|+++++.++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~ 312 (595)
T TIGR02350 233 DEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVR 312 (595)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 999999988888899999999999999999999999999988876542 4678999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEeccc
Q 041815 323 MCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNP 402 (475)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p 402 (475)
++|+++++++.+++.|+|+||+||+|+|++.|++.| +.++....||++|||+|||++|+++++. ++++.+.|++|
T Consensus 313 ~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f-~~~~~~~~~pdeava~GAa~~aa~l~~~----~~~~~~~d~~~ 387 (595)
T TIGR02350 313 QALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEPNKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTP 387 (595)
T ss_pred HHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHh-CCcccCCcCcHHHHHHHHHHHHHHhcCC----cccceeeeccc
Confidence 999999999999999999999999999999999999 5778889999999999999999999985 68899999999
Q ss_pred CCCCccccc----------ccccc-cccCC-CCCCCCCccccccceec-----cCcccccccccCCC
Q 041815 403 NYNSPLELK----------TTTSF-AAQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRP 452 (475)
Q Consensus 403 ~~~~~~~~~----------~~~~~-~~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~ 452 (475)
++++..... +..|. ....+ +..++|+...++.++.. ++..++.+..-+.|
T Consensus 388 ~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~ 454 (595)
T TIGR02350 388 LSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIP 454 (595)
T ss_pred ceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCC
Confidence 997742111 11111 11122 34566666666666643 23445566655544
No 15
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=2.2e-71 Score=582.60 Aligned_cols=427 Identities=37% Similarity=0.588 Sum_probs=371.4
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChhh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSV 86 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (475)
..+||||||||||+||++.+|.+++++|..|++.+||+|+|.+++++||..|+.+...+|.++++++||++|+.+.+ +
T Consensus 19 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 96 (616)
T PRK05183 19 RLAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--I 96 (616)
T ss_pred CeEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--h
Confidence 47899999999999999999999999999999999999999988899999999999999999999999999998876 3
Q ss_pred hhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 041815 87 QSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAG 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~ 166 (475)
+.....+||.+...+++.+.+.+. +. .++|+++++++|++|++.++.+++..+.++|||||+||++.||+++++|+
T Consensus 97 ~~~~~~~~~~~~~~~~g~~~~~~~--~~--~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 172 (616)
T PRK05183 97 QQRYPHLPYQFVASENGMPLIRTA--QG--LKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAA 172 (616)
T ss_pred hhhhhcCCeEEEecCCCceEEEec--CC--eEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 445677899988777777766653 22 48999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHH
Q 041815 167 AMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (475)
Q Consensus 167 ~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 246 (475)
+.||++++++++||+|||++|+.+... +..++|||+||||||+|++++.++.++++++.++..+||++||+.|++++.
T Consensus 173 ~~AGl~v~~li~EPtAAAlay~~~~~~--~~~vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~ 250 (616)
T PRK05183 173 RLAGLNVLRLLNEPTAAAIAYGLDSGQ--EGVIAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWIL 250 (616)
T ss_pred HHcCCCeEEEecchHHHHHHhhcccCC--CCEEEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999987644 789999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 041815 247 QEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLR 326 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~ 326 (475)
++++ .+...+++.+.+|+.+||++|+.||.+..+.+.++.+ ...|||++|+++++|+++++.++++++|+
T Consensus 251 ~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~------~~~itr~efe~l~~~l~~~~~~~i~~~L~ 320 (616)
T PRK05183 251 EQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW------QGEITREQFNALIAPLVKRTLLACRRALR 320 (616)
T ss_pred HHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC------CCeEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 3344678999999999999999999999888888532 22499999999999999999999999999
Q ss_pred hCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccCCCC
Q 041815 327 TGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPNYNS 406 (475)
Q Consensus 327 ~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~~~~ 406 (475)
+++++..+|+.|+|+||+||+|+|++.|++.| +..+..+.||++|||+|||++|+++++. ++++++.+.|++|+++|
T Consensus 321 ~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeaVA~GAAi~a~~l~~~--~~~~~~~l~dv~p~slg 397 (616)
T PRK05183 321 DAGVEADEVKEVVMVGGSTRVPLVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGN--KPDSDMLLLDVIPLSLG 397 (616)
T ss_pred HcCCCcccCCEEEEECCcccChHHHHHHHHHh-ccCcCcCCCchHHHHHHHHHHHHHhccc--cccCceEEEeecccccc
Confidence 99999999999999999999999999999999 5566778999999999999999999985 34678999999999987
Q ss_pred cccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCCC
Q 041815 407 PLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAF 454 (475)
Q Consensus 407 ~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~ 454 (475)
.... ++..|.. .+.+ +..++|+...+|.+++. ++..++.+..-++|..
T Consensus 398 i~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~ 462 (616)
T PRK05183 398 LETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPM 462 (616)
T ss_pred ceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCC
Confidence 4321 1111221 1222 45677777777777754 3455677777777654
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1e-69 Score=577.81 Aligned_cols=395 Identities=49% Similarity=0.811 Sum_probs=362.5
Q ss_pred EEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChhhhh
Q 041815 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSVQS 88 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~~ 88 (475)
||||||||+||+||++.++.++++.|..|+|++||+|+|.++++++|..|.....++|.++++++|++||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHH
Q 041815 89 DVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGAM 168 (475)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~~ 168 (475)
..+.+||.+..++++...+.+.+.|+...++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999999989999999998888788999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHH
Q 041815 169 AGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQE 248 (475)
Q Consensus 169 agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~ 248 (475)
||++++++|+||+|||++|+..... .+..+||||+||||+|++++++.++.+++++..++..+||.+||+.|++++.++
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~ 239 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEK 239 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc-cccceeccccccceEeeeehhcccccccccccccccccccceecceeecccccc
Confidence 9999999999999999999887665 488999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC--CceeEEEEecccc-CccceEEEcHHHHHHHHHHHHHHHHHHHHHHH
Q 041815 249 FKRKTEKDISGSPRAVQRLRKDCERAKRILSS--TSQTTIEIDSLYE-GIDFSSVMTRARFEELNMDLFRKCIKHVDMCL 325 (475)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--~~~~~~~i~~~~~-~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l 325 (475)
|.++.+.++..+++.+.+|+.+||++|+.||. +.+..+.++.+.+ |.++.+.|||++|+++++|+++++.++++++|
T Consensus 240 ~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~l 319 (602)
T PF00012_consen 240 FKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKAL 319 (602)
T ss_dssp HHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceeccccccccccccccccccc
Confidence 99998888889999999999999999999999 6677778887777 78899999999999999999999999999999
Q ss_pred HhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccCCC
Q 041815 326 RTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPNYN 405 (475)
Q Consensus 326 ~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~~~ 405 (475)
++++.+..+|+.|+|+||+||+|+|++.|++.|+ .++..+.||++|||+|||++|+.+++. ++++++.+.|++|+++
T Consensus 320 ~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~~--~~~~~~~~~d~~~~~~ 396 (602)
T PF00012_consen 320 KDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSGS--FRVKDIKIIDVTPFSI 396 (602)
T ss_dssp HHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHTS--CSSTSSCESEBESSEE
T ss_pred ccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhccc--cccccccccccccccc
Confidence 9999999999999999999999999999999995 788899999999999999999999983 5678999999999887
Q ss_pred Cc
Q 041815 406 SP 407 (475)
Q Consensus 406 ~~ 407 (475)
+.
T Consensus 397 ~i 398 (602)
T PF00012_consen 397 GI 398 (602)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 17
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-70 Score=543.52 Aligned_cols=396 Identities=39% Similarity=0.635 Sum_probs=387.0
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChhhh
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSVQ 87 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v~ 87 (475)
.++|||||..++.+|+.+.+++++|.|+.++|.+|++|+|..++|++|.+|..+..+|+.+++..+||++|+.|++|.++
T Consensus 2 svvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~q 81 (727)
T KOG0103|consen 2 SVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEVQ 81 (727)
T ss_pred CceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHhh
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Q 041815 88 SDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGA 167 (475)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~ 167 (475)
.+.+.+|++++..+|+...+.+.+.|+.+.++++++++|+|.+|++.+++.+..++.++||+||+||++.||+++.+|++
T Consensus 82 ~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA~ 161 (727)
T KOG0103|consen 82 REIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAAR 161 (727)
T ss_pred hcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeeeeechHHHHHHhhhccCCC-----CCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHH
Q 041815 168 MAGLNVLKIISEPTAAAIAYGLDRKAT-----SEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMV 242 (475)
Q Consensus 168 ~agl~~~~~i~Ep~Aaa~~~~~~~~~~-----~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~ 242 (475)
+|||+.+++++|.+|+|++|+..++.. ++.+++++|+|++++.+|++.+.+|.++++++.++..+||++||+.|.
T Consensus 162 iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D~~lGgr~fDe~L~ 241 (727)
T KOG0103|consen 162 IAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKGKLKVLATAFDRKLGGRDFDEALI 241 (727)
T ss_pred hcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccCcceeeeeecccccccchHHHHHH
Confidence 999999999999999999999988754 468899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHH
Q 041815 243 NHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVD 322 (475)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~ 322 (475)
+|+..+|+.++++++..++++..||+.+||+.|+.||.++..+.+|++++++.|.+..|+|+|||+++.|+++++..++.
T Consensus 242 ~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p~~ 321 (727)
T KOG0103|consen 242 DHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVPLL 321 (727)
T ss_pred HHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEeccc
Q 041815 323 MCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNP 402 (475)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p 402 (475)
++|++++++..||+.|.+|||+||+|.|++.|.++| ++.+.+++|.++|||+|||+++|++|+ .|+|+.+-+.|+.|
T Consensus 322 ~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di~p 398 (727)
T KOG0103|consen 322 KALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDIVP 398 (727)
T ss_pred HHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceecccc
Confidence 999999999999999999999999999999999999 899999999999999999999999999 58899999999999
Q ss_pred CCCC
Q 041815 403 NYNS 406 (475)
Q Consensus 403 ~~~~ 406 (475)
|+++
T Consensus 399 ysIs 402 (727)
T KOG0103|consen 399 YSIS 402 (727)
T ss_pred eeEE
Confidence 9874
No 18
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.7e-67 Score=545.69 Aligned_cols=405 Identities=29% Similarity=0.466 Sum_probs=332.6
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChhh
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSV 86 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (475)
..+||||||||||+||++.+|+++++.|..|++++||+|+|.++++++|..| +++++||++|+++++...
T Consensus 19 ~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~ 88 (595)
T PRK01433 19 QIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILN 88 (595)
T ss_pred ceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhcc
Confidence 3589999999999999999999999999999999999999998889999976 789999999998875221
Q ss_pred hhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 041815 87 QSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAG 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~ 166 (475)
............... ...+.+...++ .++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++|+
T Consensus 89 ~~~~~~~~k~~~~~~--~~~~~~~~~~~--~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~Aa 164 (595)
T PRK01433 89 TPALFSLVKDYLDVN--SSELKLNFANK--QLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAA 164 (595)
T ss_pred chhhHhhhhheeecC--CCeeEEEECCE--EEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 111100011111111 22334444453 59999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHH
Q 041815 167 AMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (475)
Q Consensus 167 ~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 246 (475)
+.||++++++++||+|||++|+.+... ...++|||+||||||+|++++.++.++++++.++..+||++||+.|.+|+.
T Consensus 165 ~~AGl~v~~li~EPtAAAlay~~~~~~--~~~vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~ 242 (595)
T PRK01433 165 KIAGFEVLRLIAEPTAAAYAYGLNKNQ--KGCYLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLC 242 (595)
T ss_pred HHcCCCEEEEecCcHHHHHHHhcccCC--CCEEEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHH
Confidence 999999999999999999999987644 678999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Q 041815 247 QEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLR 326 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~ 326 (475)
.+|. ...+.+. ++.||++|+.||.+..... ..+.|||++|+++++|+++++.++++++|+
T Consensus 243 ~~~~------~~~~~~~----~~~~ekaK~~LS~~~~~~~----------~~~~itr~efe~l~~~l~~~~~~~i~~~L~ 302 (595)
T PRK01433 243 NKFD------LPNSIDT----LQLAKKAKETLTYKDSFNN----------DNISINKQTLEQLILPLVERTINIAQECLE 302 (595)
T ss_pred HhcC------CCCCHHH----HHHHHHHHHhcCCCccccc----------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8774 2223322 3359999999998764321 168899999999999999999999999999
Q ss_pred hCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEecccCCCC
Q 041815 327 TGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDVNPNYNS 406 (475)
Q Consensus 327 ~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~~p~~~~ 406 (475)
+++ ..+|+.|+||||+||+|+|++.|++.| +.++..+.||++|||+|||++|+.+++. ..++.++|++|+|+|
T Consensus 303 ~a~--~~~Id~ViLvGGssriP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~~----~~~~~l~Dv~p~slg 375 (595)
T PRK01433 303 QAG--NPNIDGVILVGGATRIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIAP----HTNSLLIDVVPLSLG 375 (595)
T ss_pred hcC--cccCcEEEEECCcccChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhCC----ccceEEEEecccceE
Confidence 998 568999999999999999999999999 6778888999999999999999999885 368899999999977
Q ss_pred cccc----------ccccccc-ccCC-CCCCCCCccccccceec-----cCcccccccccCCCCC
Q 041815 407 PLEL----------KTTTSFA-AQNL-PSRGGHKSHQAHDLQLK-----NHKTLSKCNGCKRPAF 454 (475)
Q Consensus 407 ~~~~----------~~~~~~~-~~~~-~~~~~~~~~~~h~l~~~-----~~~~~~~c~~c~~~~~ 454 (475)
.... ++..|.. .+.+ +..++|+...+|.+++. +|..++.+..-+.|-.
T Consensus 376 i~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~ 440 (595)
T PRK01433 376 MELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPM 440 (595)
T ss_pred EEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCC
Confidence 4221 1111211 1222 45678888888887744 4566788887776654
No 19
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-64 Score=501.02 Aligned_cols=395 Identities=33% Similarity=0.565 Sum_probs=370.7
Q ss_pred CCEEEEecCCccEEEEEEECC-cEEEEecCCCCcccceEEEEcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 7 APAIGIDLGTTYSCVGVWQHD-RVEIIANDQGNRTTPSYVAFTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g-~~~vi~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
..+++||+||.+++||+..+| +.+++.|..++|++|++|+|.+++|+||.+|.....++|..++..++.++|+...++.
T Consensus 22 ~AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~ 101 (902)
T KOG0104|consen 22 LAVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPT 101 (902)
T ss_pred hhheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcH
Confidence 578999999999999999988 5689999999999999999999999999999999999999999999999999999998
Q ss_pred hhhcccccCe-EEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 041815 86 VQSDVKLWPF-EVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKD 164 (475)
Q Consensus 86 v~~~~~~~~~-~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~ 164 (475)
++...+++|+ .++.++ .+..+.+.+.+ ...|+++++++|+|.+.+..|+.+...+++++|||||.||++++|+++.+
T Consensus 102 v~ly~~~~p~~e~v~d~-~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~ 179 (902)
T KOG0104|consen 102 VDLYQKRFPFFELVEDP-QRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQ 179 (902)
T ss_pred HHHHHhcCCceeecccC-ccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHH
Confidence 8888888776 666555 67778887777 34599999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeeeeechHHHHHHhhhccCCC---CCceEEEEEeCCCceEEEEEEEe----------CCeEEEEEEcCCCC
Q 041815 165 AGAMAGLNVLKIISEPTAAAIAYGLDRKAT---SEKNVLIFDLGGGTFDVSLLTIE----------KGIFKVKATAGDTH 231 (475)
Q Consensus 165 a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~---~~~~vlvvD~Gggt~dvsv~~~~----------~~~~~v~~~~~~~~ 231 (475)
|+++||++++.+|++.+|+|+.|+..+... .+.+++|||||+|+|..+++.+. ...+++++.+.+..
T Consensus 180 Aa~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~t 259 (902)
T KOG0104|consen 180 AAQIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRT 259 (902)
T ss_pred HHHhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCc
Confidence 999999999999999999999999986332 57899999999999999999985 24789999999999
Q ss_pred CchhHHHHHHHHHHHHHHHhhcc--CCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHH
Q 041815 232 LGGEDFDNRMVNHFIQEFKRKTE--KDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEEL 309 (475)
Q Consensus 232 ~GG~~id~~l~~~l~~~~~~~~~--~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~ 309 (475)
+||..|..+|.++|.+.|.++.+ .++..+++++.+|.++|+++|..||.+.++.+.|+++.++.|++..|||++||++
T Consensus 260 LGG~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEel 339 (902)
T KOG0104|consen 260 LGGLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEEL 339 (902)
T ss_pred cchHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHH
Confidence 99999999999999999998876 4688899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCC
Q 041815 310 NMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRS 389 (475)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~ 389 (475)
|+++..++..+|.++|..++++..+|+.|+|.||+||+|.||+.|.+..+..++...+|.|||+++||+++||.||. +
T Consensus 340 c~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--s 417 (902)
T KOG0104|consen 340 CADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--S 417 (902)
T ss_pred HHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--c
Confidence 99999999999999999999999999999999999999999999999998789999999999999999999999998 6
Q ss_pred CcccceEEEecccCCC
Q 041815 390 DKVEDIVILDVNPNYN 405 (475)
Q Consensus 390 ~~~~~~~~~d~~p~~~ 405 (475)
|+|+++.+.|.++|++
T Consensus 418 FKvKpf~V~D~~~yp~ 433 (902)
T KOG0104|consen 418 FKVKPFNVVDASVYPY 433 (902)
T ss_pred ccccceeeeecccccE
Confidence 9999999999999874
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=4.5e-57 Score=454.71 Aligned_cols=337 Identities=24% Similarity=0.366 Sum_probs=287.9
Q ss_pred EEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEc----------------------------------------
Q 041815 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFT---------------------------------------- 48 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~---------------------------------------- 48 (475)
++|||||||||++|++++|.++++++..|.+.+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6899999999999999999999999999999999999993
Q ss_pred -CCcEEecHHHHHhhhhCCCce--ecccHHhhCCCCCChhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHH
Q 041815 49 -DKECFVGDAAKNQVAMNPTNT--VFDAKRLIGRRFGDVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISS 125 (475)
Q Consensus 49 -~~~~~~G~~A~~~~~~~~~~~--~~~~k~~lg~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~ 125 (475)
+++.++|..|.+++..+|+++ +.++|++||...-.+ + ....++++++
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~----------------------------~--~~~~~e~l~a 131 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP----------------------------Q--QVALFEDLVC 131 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc----------------------------c--ceeCHHHHHH
Confidence 456789999999999999998 779999998642110 0 1135899999
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCCCCC-----HHHHHH---HHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCc
Q 041815 126 MVLAKMRDIAEDYVGSPVSNAVVTVPAYFT-----DSQRQA---TKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEK 197 (475)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~vitVP~~~~-----~~~r~~---l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~ 197 (475)
++|++|++.++.+++.++.++|||||++|+ +.+|++ +++|++.||++.+++++||+|||++|+..... +.
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~--~~ 209 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTE--EK 209 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCC--CC
Confidence 999999999999999999999999999998 778766 69999999999999999999999999876543 78
Q ss_pred eEEEEEeCCCceEEEEEEEeCC-------eEEEEEEcCCCCCchhHHHHHHH-HHHHHHHHhh----ccCCC--------
Q 041815 198 NVLIFDLGGGTFDVSLLTIEKG-------IFKVKATAGDTHLGGEDFDNRMV-NHFIQEFKRK----TEKDI-------- 257 (475)
Q Consensus 198 ~vlvvD~Gggt~dvsv~~~~~~-------~~~v~~~~~~~~~GG~~id~~l~-~~l~~~~~~~----~~~~~-------- 257 (475)
.+||+|+||||+|+|++++.++ ..+++++.+ ..+||++||+.|+ +++...|.+. .+.++
T Consensus 210 ~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~ 288 (450)
T PRK11678 210 RVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNA 288 (450)
T ss_pred eEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhh
Confidence 9999999999999999999754 357899888 6899999999998 6777776421 11100
Q ss_pred ---------------------------CCCHHHH------------HHHHHHHHHHHHHhcCCceeEEEEeccccCccce
Q 041815 258 ---------------------------SGSPRAV------------QRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFS 298 (475)
Q Consensus 258 ---------------------------~~~~~~~------------~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~ 298 (475)
..+++.+ .+|+.+||++|+.||.++.+.+.++.+.. ++.
T Consensus 289 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~--~~~ 366 (450)
T PRK11678 289 VAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD--GLA 366 (450)
T ss_pred hhhhccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC--Ccc
Confidence 0123333 36788999999999999999999886543 477
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHH
Q 041815 299 SVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAA 378 (475)
Q Consensus 299 ~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa 378 (475)
..|||++|+++++++++++.++++++|++++++ ++.|+||||+|++|+|++.+++.||+.++. ..+|.++||.|+|
T Consensus 367 ~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~-~g~~~~sVa~Gla 442 (450)
T PRK11678 367 TEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIV-GGDDFGSVTAGLA 442 (450)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEE-eCCCcchHHHHHH
Confidence 899999999999999999999999999999875 479999999999999999999999766655 4599999999999
Q ss_pred HHHHHH
Q 041815 379 VQAAVL 384 (475)
Q Consensus 379 ~~a~~~ 384 (475)
++|..+
T Consensus 443 ~~a~~~ 448 (450)
T PRK11678 443 RWAQVV 448 (450)
T ss_pred HHHHhh
Confidence 998754
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=100.00 E-value=4.5e-41 Score=331.18 Aligned_cols=307 Identities=24% Similarity=0.349 Sum_probs=237.2
Q ss_pred EEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC--c-EEecHHHHHhhhhCCCceecccHHhhCCCCCChhh
Q 041815 10 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK--E-CFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVSV 86 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~v 86 (475)
+||||||++|+++.. ++..++. .||+|++..+ . ..+|++|++...+.|.+.... +.+ .
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~--~pi----~---- 66 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI--RPL----R---- 66 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE--ccC----C----
Confidence 899999999999876 4444443 5999999853 2 468999998776666665421 101 0
Q ss_pred hhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHH
Q 041815 87 QSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAG 166 (475)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~ 166 (475)
+|. +...+....+++++.+.+..........+++|||++|+..+|+++++|+
T Consensus 67 -------------------------~G~---i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~ 118 (336)
T PRK13928 67 -------------------------DGV---IADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAA 118 (336)
T ss_pred -------------------------CCe---EecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 011 2333455556666654443222223346999999999999999999999
Q ss_pred HHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHH
Q 041815 167 AMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (475)
Q Consensus 167 ~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 246 (475)
+.||++.+.+++||+|||++|+.+... +..++|||+||||||+++++.+. ....++.++||++||+.|.+++.
T Consensus 119 ~~ag~~~~~li~ep~Aaa~~~g~~~~~--~~~~lVvDiGggttdvsvv~~g~-----~~~~~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 119 EQAGAKKVYLIEEPLAAAIGAGLDISQ--PSGNMVVDIGGGTTDIAVLSLGG-----IVTSSSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred HHcCCCceEecccHHHHHHHcCCcccC--CCeEEEEEeCCCeEEEEEEEeCC-----EEEeCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999986544 67799999999999999999865 33456789999999999999998
Q ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCc----eeEEEEe--ccccCccceEEEcHHHHHHHHHHHHHHHHHH
Q 041815 247 QEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTS----QTTIEID--SLYEGIDFSSVMTRARFEELNMDLFRKCIKH 320 (475)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~----~~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~ 320 (475)
.+|.... + ...||++|+.++... ...+.+. .+..+.+..+.|+|++|++++.+.++++.+.
T Consensus 192 ~~~~~~~------~-------~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~ 258 (336)
T PRK13928 192 KKYKLLI------G-------ERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQA 258 (336)
T ss_pred HHhchhc------C-------HHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHH
Confidence 7774221 1 246889998876431 1233332 2334556778999999999999999999999
Q ss_pred HHHHHHhCC--CCCCCCC-eEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHH
Q 041815 321 VDMCLRTGK--TDNSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVL 384 (475)
Q Consensus 321 i~~~l~~~~--~~~~~i~-~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~ 384 (475)
+++.|+.++ +....++ .|+|+||+|++|++++.+++.| +.++....||+++||.||++++..+
T Consensus 259 i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 259 VKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 999999976 3445677 7999999999999999999999 7788888899999999999998765
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=100.00 E-value=1.4e-40 Score=326.52 Aligned_cols=306 Identities=25% Similarity=0.363 Sum_probs=244.0
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCCc---EEecHHHHHhhhhCCCceecccHHhhCCCCCCh
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDKE---CFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDV 84 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (475)
..+||||||++|++ +.+++.. +.| .||+|+++.++ ..+|++|+.+..++|.++... +.+.
T Consensus 5 ~~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~--~pi~------ 67 (335)
T PRK13929 5 TEIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV--RPMK------ 67 (335)
T ss_pred CeEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE--ecCC------
Confidence 35999999999986 3445443 444 39999997432 579999999998888877552 2110
Q ss_pred hhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCC--eEEEEeCCCCCHHHHHHH
Q 041815 85 SVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVS--NAVVTVPAYFTDSQRQAT 162 (475)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~--~~vitVP~~~~~~~r~~l 162 (475)
+|. +..-++.+.+|++++..++..++..+. .+|+|||++|+..+|+++
T Consensus 68 ---------------------------~G~---I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l 117 (335)
T PRK13929 68 ---------------------------DGV---IADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAI 117 (335)
T ss_pred ---------------------------CCc---cCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHH
Confidence 011 122368889999999988877776543 799999999999999999
Q ss_pred HHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHH
Q 041815 163 KDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMV 242 (475)
Q Consensus 163 ~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~ 242 (475)
.+|++.||++.+.+++||+|||++|+.+... +..++|+|+|+||||++++..++ ....++..+||++||+.|.
T Consensus 118 ~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~--~~~~lvvDiG~gtt~v~vi~~~~-----~~~~~~~~~GG~~id~~l~ 190 (335)
T PRK13929 118 SDAVKNCGAKNVHLIEEPVAAAIGADLPVDE--PVANVVVDIGGGTTEVAIISFGG-----VVSCHSIRIGGDQLDEDIV 190 (335)
T ss_pred HHHHHHcCCCeeEeecCHHHHHHhcCCCcCC--CceEEEEEeCCCeEEEEEEEeCC-----EEEecCcCCHHHHHHHHHH
Confidence 9999999999999999999999999876544 67899999999999999998765 3345668899999999999
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC----ceeEEEEec--cccCccceEEEcHHHHHHHHHHHHHH
Q 041815 243 NHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST----SQTTIEIDS--LYEGIDFSSVMTRARFEELNMDLFRK 316 (475)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----~~~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~~~ 316 (475)
+++.+.|.- . .+ ...||++|+.++.. ....+.+.. +..+.+..+.+++++|++++.+++.+
T Consensus 191 ~~l~~~~~~----~--~~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g~~~~~~~p~~i~i~~~~~~~~i~~~l~~ 257 (335)
T PRK13929 191 SFVRKKYNL----L--IG-------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLH 257 (335)
T ss_pred HHHHHHhCc----C--cC-------HHHHHHHHHHHcCCCCCCCCceEEEeCCccCCCCCeEEEEcHHHHHHHHHHHHHH
Confidence 999876531 1 11 24799999999863 122233322 23455678899999999999999999
Q ss_pred HHHHHHHHHHhCCCC--CCCCC-eEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHH
Q 041815 317 CIKHVDMCLRTGKTD--NSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 317 i~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 381 (475)
+.+.+++.|+++..+ ...++ +|+|+||+|++|++++++++.| +.++....||+++|++||+..-
T Consensus 258 i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~-~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 258 ILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEI-VVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHH-CCCceeCCCHHHHHHHHHHHHH
Confidence 999999999997543 35577 6999999999999999999999 7888888899999999999874
No 23
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=4.4e-38 Score=310.30 Aligned_cols=306 Identities=25% Similarity=0.378 Sum_probs=230.9
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC---cEEecHHHHHhhhhCCCceecccHHhhCCCCCCh
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK---ECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDV 84 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (475)
..|||||||++++++....+ .++ .+||+|++... ..++|++|.++...+|.++... +.+
T Consensus 6 ~~igIDlGt~~~~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~--~pi------- 67 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI--RPM------- 67 (334)
T ss_pred ceeEEEcCcceEEEEECCCc--EEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE--ecC-------
Confidence 46899999999999654332 232 26999999643 2489999998877776654321 111
Q ss_pred hhhhcccccCeEEEecCCCCceEEEeeCCceeee-eHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHH
Q 041815 85 SVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRY-AAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATK 163 (475)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~ 163 (475)
+ +|....| ..++++..++..+... .... ..+|+|+|++|++.+|++++
T Consensus 68 -----------~---------------~G~i~d~~~~~~ll~~~~~~~~~~----~~~~-~~~vi~vP~~~~~~~r~~~~ 116 (334)
T PRK13927 68 -----------K---------------DGVIADFDVTEKMLKYFIKKVHKN----FRPS-PRVVICVPSGITEVERRAVR 116 (334)
T ss_pred -----------C---------------CCeecCHHHHHHHHHHHHHHHhhc----cCCC-CcEEEEeCCCCCHHHHHHHH
Confidence 0 0111112 2345555555444332 2111 37999999999999999999
Q ss_pred HHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHH
Q 041815 164 DAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVN 243 (475)
Q Consensus 164 ~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 243 (475)
+|++.+|++.+.+++||+|||++|+.+... +..++|||+||||||+++++.++ ....+..++||++||+.|.+
T Consensus 117 ~a~~~ag~~~~~li~ep~aaa~~~g~~~~~--~~~~lvvDiGggttdvs~v~~~~-----~~~~~~~~lGG~~id~~l~~ 189 (334)
T PRK13927 117 ESALGAGAREVYLIEEPMAAAIGAGLPVTE--PTGSMVVDIGGGTTEVAVISLGG-----IVYSKSVRVGGDKFDEAIIN 189 (334)
T ss_pred HHHHHcCCCeeccCCChHHHHHHcCCcccC--CCeEEEEEeCCCeEEEEEEecCC-----eEeeCCcCChHHHHHHHHHH
Confidence 999999999999999999999999886543 66789999999999999998765 33455678999999999999
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCce----eEEEE--eccccCccceEEEcHHHHHHHHHHHHHHH
Q 041815 244 HFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQ----TTIEI--DSLYEGIDFSSVMTRARFEELNMDLFRKC 317 (475)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~~~~i--~~~~~~~~~~~~itr~~~~~~~~~~~~~i 317 (475)
++.+++... .+ .+.+|++|+.++.... ..+.+ +....+.+..+.|+|++|++++.+.++++
T Consensus 190 ~l~~~~~~~------~~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i 256 (334)
T PRK13927 190 YVRRNYNLL------IG-------ERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAI 256 (334)
T ss_pred HHHHHhCcC------cC-------HHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHH
Confidence 998766311 11 2368889988875322 22333 22334556678999999999999999999
Q ss_pred HHHHHHHHHhCCCC--CCCCC-eEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHH
Q 041815 318 IKHVDMCLRTGKTD--NSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 318 ~~~i~~~l~~~~~~--~~~i~-~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
.+.+.+.|++++.. ...++ .|+|+||+|++|+++++|++.| +.++....||+++||+||++++..
T Consensus 257 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 257 VEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999987643 22344 5999999999999999999999 678888889999999999999865
No 24
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=100.00 E-value=2.8e-37 Score=304.01 Aligned_cols=305 Identities=25% Similarity=0.368 Sum_probs=228.7
Q ss_pred EEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC-----c--EEecHHHHHhhhhCCCceecccHHhhCCCCC
Q 041815 10 IGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK-----E--CFVGDAAKNQVAMNPTNTVFDAKRLIGRRFG 82 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~ 82 (475)
|||||||+||+++....| .++ ..||+|+|.++ . ..+|++|+....+.|.++. +++.+.
T Consensus 5 ~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC----
Confidence 999999999999875433 233 26999999743 3 6799999987766666553 122221
Q ss_pred ChhhhhcccccCeEEEecCCCCceEEEeeCCceeee-eHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHH
Q 041815 83 DVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRY-AAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQA 161 (475)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~-~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~ 161 (475)
+|....| ..++++.+++..+.+.. +.....+|+|||++|+..+|++
T Consensus 70 -----------------------------~G~i~d~~~~~~~~~~~l~~~~~~~----~~~~~~~vitvP~~~~~~~r~~ 116 (333)
T TIGR00904 70 -----------------------------DGVIADFEVTEKMIKYFIKQVHSRK----SFFKPRIVICVPSGITPVERRA 116 (333)
T ss_pred -----------------------------CCEEEcHHHHHHHHHHHHHHHhccc----ccCCCcEEEEeCCCCCHHHHHH
Confidence 0111112 23455555555543321 1112279999999999999999
Q ss_pred HHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHH
Q 041815 162 TKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRM 241 (475)
Q Consensus 162 l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 241 (475)
++++++.+|++.+.+++||+|||++|+..... +..++|+|+|+||||+++++.++ ....++..+||++||+.|
T Consensus 117 ~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~--~~~~lVvDiG~gttdvs~v~~~~-----~~~~~~~~lGG~did~~l 189 (333)
T TIGR00904 117 VKESALSAGAREVYLIEEPMAAAIGAGLPVEE--PTGSMVVDIGGGTTEVAVISLGG-----IVVSRSIRVGGDEFDEAI 189 (333)
T ss_pred HHHHHHHcCCCeEEEecCHHHHHHhcCCcccC--CceEEEEEcCCCeEEEEEEEeCC-----EEecCCccchHHHHHHHH
Confidence 99999999999999999999999999876543 67899999999999999998875 334566789999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCce-----eEEEEec--cccCccceEEEcHHHHHHHHHHHH
Q 041815 242 VNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQ-----TTIEIDS--LYEGIDFSSVMTRARFEELNMDLF 314 (475)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~-----~~~~i~~--~~~~~~~~~~itr~~~~~~~~~~~ 314 (475)
.+++.+++... .+ ++.||++|+.++.... ..+.+.. ...+.+....++++++.+++.+.+
T Consensus 190 ~~~l~~~~~~~------~~-------~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~ 256 (333)
T TIGR00904 190 INYIRRTYNLL------IG-------EQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPV 256 (333)
T ss_pred HHHHHHHhccc------CC-------HHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHH
Confidence 99998765311 11 2478899998865321 2222211 112334567899999999999999
Q ss_pred HHHHHHHHHHHHhCCCCC-CC-CC-eEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHH
Q 041815 315 RKCIKHVDMCLRTGKTDN-SS-VD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 315 ~~i~~~i~~~l~~~~~~~-~~-i~-~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
+++.+.+.+.|+.++... .+ .+ .|+|+||+|++|+++++|++.| +.++....||+++||.||+++...
T Consensus 257 ~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 257 NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 999999999999876432 23 33 7999999999999999999999 788889999999999999999654
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=100.00 E-value=8.7e-37 Score=301.44 Aligned_cols=308 Identities=25% Similarity=0.352 Sum_probs=231.0
Q ss_pred EEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcC---CcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD---KECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~---~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
.+||||||++|++++...+ + ++ .+||+|++.+ ...++|++|++.....|.+... ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~--~~---------- 68 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIEA--IR---------- 68 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeEE--ee----------
Confidence 3999999999999986333 2 32 2599999964 2368999999877655544321 11
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA 165 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a 165 (475)
|+. + |.. ..-+....+++++.+.+....+.....+|+|+|++|+..+|+++.++
T Consensus 69 --------pi~-----~----------G~i---~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~ 122 (335)
T PRK13930 69 --------PLK-----D----------GVI---ADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREA 122 (335)
T ss_pred --------cCC-----C----------CeE---cCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHH
Confidence 110 0 111 11223455555555444433344456899999999999999999999
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.+|++.+.+++||+|||++++..... ....+|||+|+||||++++..+. ....+...+||.+||+.|.+++
T Consensus 123 ~e~~g~~~~~lv~ep~AAa~a~g~~~~~--~~~~lVvDiG~gttdvs~v~~g~-----~~~~~~~~lGG~~id~~l~~~l 195 (335)
T PRK13930 123 AEHAGAREVYLIEEPMAAAIGAGLPVTE--PVGNMVVDIGGGTTEVAVISLGG-----IVYSESIRVAGDEMDEAIVQYV 195 (335)
T ss_pred HHHcCCCeEEecccHHHHHHhcCCCcCC--CCceEEEEeCCCeEEEEEEEeCC-----EEeecCcCchhHHHHHHHHHHH
Confidence 9999999999999999999999876543 55689999999999999998765 3345668999999999999999
Q ss_pred HHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCce----eEEEEe--ccccCccceEEEcHHHHHHHHHHHHHHHHH
Q 041815 246 IQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQ----TTIEID--SLYEGIDFSSVMTRARFEELNMDLFRKCIK 319 (475)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~----~~~~i~--~~~~~~~~~~~itr~~~~~~~~~~~~~i~~ 319 (475)
.+++. .. .+ .+.||++|+.++.... ..+.+. ....+.+..+.|++++|++++.+.++++.+
T Consensus 196 ~~~~~----~~--~~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~ 262 (335)
T PRK13930 196 RRKYN----LL--IG-------ERTAEEIKIEIGSAYPLDEEESMEVRGRDLVTGLPKTIEISSEEVREALAEPLQQIVE 262 (335)
T ss_pred HHHhC----CC--CC-------HHHHHHHHHHhhcCcCCCCCceEEEECccCCCCCCeeEEECHHHHHHHHHHHHHHHHH
Confidence 87653 11 11 2478999999875422 223332 223344567889999999999999999999
Q ss_pred HHHHHHHhCCCC--CCCCCe-EEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHH
Q 041815 320 HVDMCLRTGKTD--NSSVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVL 384 (475)
Q Consensus 320 ~i~~~l~~~~~~--~~~i~~-VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~ 384 (475)
.+.+.|+.+... ...++. |+|+||+|++|+++++|++.| +.++....+|+++||+||++.+...
T Consensus 263 ~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~-~~~v~~~~~p~~ava~Ga~~~~~~~ 329 (335)
T PRK13930 263 AVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEET-GLPVHIAEDPLTCVARGTGKALENL 329 (335)
T ss_pred HHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhCh
Confidence 999999986533 233454 999999999999999999999 6788888899999999999997653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=100.00 E-value=5.1e-35 Score=280.53 Aligned_cols=307 Identities=26% Similarity=0.356 Sum_probs=220.0
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC---cEEecHHHHHhhhhCCCceecccHHhhCCCCCCh
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK---ECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDV 84 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 84 (475)
.-+||||||++|.+.....| ++.++ ||+|+++.. -..+|++|+....+.|.+...
T Consensus 2 ~~igIDLGT~~t~i~~~~~G---iv~~e------pSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~------------- 59 (326)
T PF06723_consen 2 KDIGIDLGTSNTRIYVKGKG---IVLNE------PSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV------------- 59 (326)
T ss_dssp SEEEEEE-SSEEEEEETTTE---EEEEE------ES-EEEETTT--EEEESHHHHTTTTS-GTTEEE-------------
T ss_pred CceEEecCcccEEEEECCCC---EEEec------CcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE-------------
Confidence 45899999999999653333 33333 999999754 245899998776666654421
Q ss_pred hhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 041815 85 SVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKD 164 (475)
Q Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~ 164 (475)
. +|.+ +|- +.--+....+|+++.+.+.......-..++++||+.-++.+|+++.+
T Consensus 60 --~-----~Pl~---------------~Gv---I~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~ 114 (326)
T PF06723_consen 60 --V-----RPLK---------------DGV---IADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALID 114 (326)
T ss_dssp --E------SEE---------------TTE---ESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHH
T ss_pred --E-----cccc---------------CCc---ccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHH
Confidence 0 1111 121 22344666667766665554322234479999999999999999999
Q ss_pred HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHH
Q 041815 165 AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNH 244 (475)
Q Consensus 165 a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~ 244 (475)
++..+|.+.+.+++||.|||+..+++-.. +...||+|+||||||++++..++ +..+.....||++||+.|.++
T Consensus 115 a~~~aGa~~V~li~ep~AaAiGaGl~i~~--~~g~miVDIG~GtTdiavislgg-----iv~s~si~~gG~~~DeaI~~~ 187 (326)
T PF06723_consen 115 AARQAGARKVYLIEEPIAAAIGAGLDIFE--PRGSMIVDIGGGTTDIAVISLGG-----IVASRSIRIGGDDIDEAIIRY 187 (326)
T ss_dssp HHHHTT-SEEEEEEHHHHHHHHTT--TTS--SS-EEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEecchHHHHhcCCCCCCC--CCceEEEEECCCeEEEEEEECCC-----EEEEEEEEecCcchhHHHHHH
Confidence 99999999999999999999999988766 78999999999999999998766 455556789999999999999
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCc------eeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHH
Q 041815 245 FIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTS------QTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCI 318 (475)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~------~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~ 318 (475)
++++|. +..+. +.||+.|++++... ...+.-..+..|.+..+.++.+++.+++.+.+.+|.
T Consensus 188 ir~~y~------l~Ig~-------~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~ 254 (326)
T PF06723_consen 188 IREKYN------LLIGE-------RTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIV 254 (326)
T ss_dssp HHHHHS------EE--H-------HHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHhhC------cccCH-------HHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHH
Confidence 999985 22222 36788888876432 234444456778889999999999999999999999
Q ss_pred HHHHHHHHhCCCCC-CC--CCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHH
Q 041815 319 KHVDMCLRTGKTDN-SS--VDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 319 ~~i~~~l~~~~~~~-~~--i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
+.+++.|+...-.. .| -++|+|+||+|+++++.+.|++.+ +.++....||..+|+.||.....
T Consensus 255 ~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 255 EAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHHh
Confidence 99999999843221 12 257999999999999999999999 89999999999999999987643
No 27
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=100.00 E-value=1.8e-32 Score=255.33 Aligned_cols=203 Identities=21% Similarity=0.310 Sum_probs=174.4
Q ss_pred eeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCc
Q 041815 118 YAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEK 197 (475)
Q Consensus 118 ~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~ 197 (475)
+..-+..+++|+++++.++..++..+.++|+|||++|++.||+++.+|++.||++.+.+++||.|+|++|...
T Consensus 36 I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------- 108 (239)
T TIGR02529 36 VVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------- 108 (239)
T ss_pred EEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC-------
Confidence 3445678899999999999999988999999999999999999999999999999999999999999988643
Q ss_pred eEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHH
Q 041815 198 NVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRI 277 (475)
Q Consensus 198 ~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ 277 (475)
..+|+|+||||||+++++.+. +...++..+||++||+.|.+.+.-. ..+||++|+.
T Consensus 109 ~~~vvDiGggtt~i~i~~~G~-----i~~~~~~~~GG~~it~~Ia~~~~i~-------------------~~~AE~~K~~ 164 (239)
T TIGR02529 109 NGAVVDVGGGTTGISILKKGK-----VIYSADEPTGGTHMSLVLAGAYGIS-------------------FEEAEEYKRG 164 (239)
T ss_pred CcEEEEeCCCcEEEEEEECCe-----EEEEEeeecchHHHHHHHHHHhCCC-------------------HHHHHHHHHh
Confidence 259999999999999987544 2234567899999999887655211 1478899886
Q ss_pred hcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHH
Q 041815 278 LSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEF 357 (475)
Q Consensus 278 ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~ 357 (475)
++ +.+++.+++.++++++.+.+++.|++. .++.|+|+||+|++|++++.+++.
T Consensus 165 ~~----------------------~~~~~~~~i~~~~~~i~~~i~~~l~~~-----~~~~v~LtGG~a~ipgl~e~l~~~ 217 (239)
T TIGR02529 165 HK----------------------DEEEIFPVVKPVYQKMASIVKRHIEGQ-----GVKDLYLVGGACSFSGFADVFEKQ 217 (239)
T ss_pred cC----------------------CHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCEEEEECchhcchhHHHHHHHH
Confidence 53 145678899999999999999999864 467999999999999999999999
Q ss_pred cCCcccccCCCCcchhhchHHH
Q 041815 358 FNGKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 358 ~~~~~v~~~~~p~~ava~Gaa~ 379 (475)
| +.++..+.||++++|.||++
T Consensus 218 l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 218 L-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred h-CCCcccCCCCCeehhheeec
Confidence 9 78899999999999999986
No 28
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=100.00 E-value=6.2e-32 Score=248.84 Aligned_cols=310 Identities=25% Similarity=0.365 Sum_probs=242.6
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcC--Cc---EEecHHHHHhhhhCCCceecccHHhhCCCCC
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD--KE---CFVGDAAKNQVAMNPTNTVFDAKRLIGRRFG 82 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~--~~---~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~ 82 (475)
.-|||||||.||.|..-..| ++.++ ||+|++.. +. ..+|.+|+...-+.|.+...
T Consensus 7 ~diGIDLGTanTlV~~k~kg---IVl~e------PSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~a----------- 66 (342)
T COG1077 7 NDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVA----------- 66 (342)
T ss_pred ccceeeecccceEEEEcCce---EEecC------ceEEEEeecCCCceEEEehHHHHHHhccCCCCceE-----------
Confidence 47999999999999875333 55555 99999976 22 35899998766555554421
Q ss_pred ChhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcC-CCCCeEEEEeCCCCCHHHHHH
Q 041815 83 DVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVG-SPVSNAVVTVPAYFTDSQRQA 161 (475)
Q Consensus 83 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~-~~~~~~vitVP~~~~~~~r~~ 161 (475)
.+ +. -+|. +.--++...+++++.+.....-. .....+++.||..-++-+|++
T Consensus 67 ----iR----------Pm----------kdGV---IAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrA 119 (342)
T COG1077 67 ----IR----------PM----------KDGV---IADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRA 119 (342)
T ss_pred ----Ee----------ec----------CCcE---eecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHH
Confidence 11 01 1122 34455666777777666543222 333469999999999999999
Q ss_pred HHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHH
Q 041815 162 TKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRM 241 (475)
Q Consensus 162 l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 241 (475)
+++|++.||.+.+.++.||.|||+..++.-.. +..-||||+||||||++++.+++ +.++....+||+.||+.+
T Consensus 120 i~ea~~~aGa~~V~lieEp~aAAIGaglpi~e--p~G~mvvDIGgGTTevaVISlgg-----iv~~~Sirv~GD~~De~I 192 (342)
T COG1077 120 IKEAAESAGAREVYLIEEPMAAAIGAGLPIME--PTGSMVVDIGGGTTEVAVISLGG-----IVSSSSVRVGGDKMDEAI 192 (342)
T ss_pred HHHHHHhccCceEEEeccHHHHHhcCCCcccC--CCCCEEEEeCCCceeEEEEEecC-----EEEEeeEEEecchhhHHH
Confidence 99999999999999999999999999887766 66789999999999999999998 777777899999999999
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC--------CceeEEEEeccccCccceEEEcHHHHHHHHHHH
Q 041815 242 VNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSS--------TSQTTIEIDSLYEGIDFSSVMTRARFEELNMDL 313 (475)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--------~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~ 313 (475)
.++++++|+ +....+. +|++|.+... ..+..+....+..|.+..+.++.+++.+++++.
T Consensus 193 i~yvr~~~n------l~IGe~t-------aE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~ 259 (342)
T COG1077 193 IVYVRKKYN------LLIGERT-------AEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEP 259 (342)
T ss_pred HHHHHHHhC------eeecHHH-------HHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHH
Confidence 999999886 4444444 5555554332 233556666677788889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCC--CCCCCCe-EEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHc
Q 041815 314 FRKCIKHVDMCLRTGKT--DNSSVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLS 385 (475)
Q Consensus 314 ~~~i~~~i~~~l~~~~~--~~~~i~~-VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 385 (475)
++.|.+.++..|++..- ..+-++. ++|+||+|.+..+.+.|++.. +.++....+|-.+||+|+......+.
T Consensus 260 v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et-~~pv~ia~~pL~~Va~G~G~~le~~~ 333 (342)
T COG1077 260 LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEET-GVPVIIADDPLTCVAKGTGKALEALD 333 (342)
T ss_pred HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhcc-CCeEEECCChHHHHHhccchhhhhhH
Confidence 99999999999998432 2223455 999999999999999999999 88999999999999999998776654
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.97 E-value=1.2e-29 Score=240.49 Aligned_cols=202 Identities=22% Similarity=0.338 Sum_probs=173.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEE
Q 041815 121 EEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVL 200 (475)
Q Consensus 121 ~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vl 200 (475)
-+.....|+++++.++.+++..+..++++||++|+..+|+++.++++.||++...+++||.|++.++... ..+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~ 138 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGA 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcE
Confidence 4456678888899999998888999999999999999999999999999999999999999999987542 258
Q ss_pred EEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC
Q 041815 201 IFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSS 280 (475)
Q Consensus 201 vvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~ 280 (475)
++|+||||||+++++.+. +...++.++||++||+.|++++.-. .++||++|+.++
T Consensus 139 vvDIGggtt~i~v~~~g~-----~~~~~~~~~GG~~it~~Ia~~l~i~-------------------~~eAE~lK~~~~- 193 (267)
T PRK15080 139 VVDIGGGTTGISILKDGK-----VVYSADEPTGGTHMSLVLAGAYGIS-------------------FEEAEQYKRDPK- 193 (267)
T ss_pred EEEeCCCcEEEEEEECCe-----EEEEecccCchHHHHHHHHHHhCCC-------------------HHHHHHHHhccC-
Confidence 999999999999986443 2233568999999999998776321 247888888642
Q ss_pred CceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCC
Q 041815 281 TSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNG 360 (475)
Q Consensus 281 ~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~ 360 (475)
+++++.++++++++++.+.+++.++.. .++.|+|+||+|++|++++.+++.| +
T Consensus 194 ---------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~e~l~~~l-g 246 (267)
T PRK15080 194 ---------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFEEVFEKQT-G 246 (267)
T ss_pred ---------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHHHHHHHHh-C
Confidence 357889999999999999999999863 5789999999999999999999999 7
Q ss_pred cccccCCCCcchhhchHHHHH
Q 041815 361 KRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 361 ~~v~~~~~p~~ava~Gaa~~a 381 (475)
.++..+.||+.++|.|||+++
T Consensus 247 ~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 247 LPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred CCcccCCCchHHHHHHHHhhC
Confidence 889999999999999999874
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.94 E-value=1e-25 Score=227.63 Aligned_cols=197 Identities=19% Similarity=0.215 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHH
Q 041815 158 QRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDF 237 (475)
Q Consensus 158 ~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~i 237 (475)
..+.+.+|++.||++...++.||.|+|++++.+.+. +..++|+|+||||||++++..+. +......++||+++
T Consensus 167 ~~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~--~~gv~vvDiGggtTdisv~~~G~-----l~~~~~i~~GG~~i 239 (420)
T PRK09472 167 MAKNIVKAVERCGLKVDQLIFAGLASSYAVLTEDER--ELGVCVVDIGGGTMDIAVYTGGA-----LRHTKVIPYAGNVV 239 (420)
T ss_pred HHHHHHHHHHHcCCeEeeEEehhhHHHHHhcChhhh--hcCeEEEEeCCCceEEEEEECCE-----EEEEeeeechHHHH
Confidence 345556799999999999999999999998765433 67899999999999999998433 44455689999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC------ceeEEEEeccccCccceEEEcHHHHHHHHH
Q 041815 238 DNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST------SQTTIEIDSLYEGIDFSSVMTRARFEELNM 311 (475)
Q Consensus 238 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~~~~~~ 311 (475)
++.|...+.-. ..+||++|+.+... ....+.++..... ....+++++|.+++.
T Consensus 240 t~dIa~~l~i~-------------------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~~--~~~~i~~~~l~~ii~ 298 (420)
T PRK09472 240 TSDIAYAFGTP-------------------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGGR--PPRSLQRQTLAEVIE 298 (420)
T ss_pred HHHHHHHhCcC-------------------HHHHHHHHHhcceeccccCCCCceeEecCCCCC--CCeEEcHHHHHHHHH
Confidence 99998665221 24789998765432 2345666654332 235889999999999
Q ss_pred HHHHHHHHHHHH-------HHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCccccc------------CCCCcch
Q 041815 312 DLFRKCIKHVDM-------CLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK------------NINPDEA 372 (475)
Q Consensus 312 ~~~~~i~~~i~~-------~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~------------~~~p~~a 372 (475)
+.++++.+.+++ .|.+++.....++.|+|+||+|++|++++.+++.| +.++.. ..+|..+
T Consensus 299 ~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f-~~~vri~~P~~~~g~~~~~~~P~~a 377 (420)
T PRK09472 299 PRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVF-HTQVRIGAPLNITGLTDYAQEPYYS 377 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHh-CCCeEEeCCcccCCChhhcCCcHHH
Confidence 988888877765 44666777778999999999999999999999999 444332 2389999
Q ss_pred hhchHHHHHHH
Q 041815 373 VAYGAAVQAAV 383 (475)
Q Consensus 373 va~Gaa~~a~~ 383 (475)
+|.|+++++..
T Consensus 378 ta~Gl~~~~~~ 388 (420)
T PRK09472 378 TAVGLLHYGKE 388 (420)
T ss_pred HHHHHHHHhhh
Confidence 99999999763
No 31
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.94 E-value=9.3e-26 Score=225.39 Aligned_cols=195 Identities=21% Similarity=0.272 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchh
Q 041815 156 DSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGE 235 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~ 235 (475)
....+.+.++++.||+++..++.||.|+|++|+..... +..++|+|+|+||||++++..+. +...+..++||+
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~~~--~~~~~vvDiG~gtt~i~i~~~g~-----~~~~~~i~~GG~ 229 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTEDEK--ELGVCLIDIGGGTTDIAVYTGGS-----IRYTKVIPIGGN 229 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcchh--cCCEEEEEeCCCcEEEEEEECCE-----EEEEeeecchHH
Confidence 35577889999999999999999999999998654332 67899999999999999997443 222445789999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC------ceeEEEEeccccCccceEEEcHHHHHHH
Q 041815 236 DFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST------SQTTIEIDSLYEGIDFSSVMTRARFEEL 309 (475)
Q Consensus 236 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~~~~ 309 (475)
+||+.|.+.+.. ...+||++|+.++.. ....+.++... .+....++|++|+++
T Consensus 230 ~it~~i~~~l~~-------------------~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~is~~~l~~i 288 (371)
T TIGR01174 230 HITKDIAKALRT-------------------PLEEAERIKIKYGCASIPLEGPDENIEIPSVG--ERPPRSLSRKELAEI 288 (371)
T ss_pred HHHHHHHHHhCC-------------------CHHHHHHHHHHeeEecccCCCCCCEEEeccCC--CCCCeEEcHHHHHHH
Confidence 999998775421 134899999998753 24556666543 356689999999999
Q ss_pred HHHHHHHHHHHHH-HHHHhCCCCCCCCCe-EEEecCCCCcHHHHHHHHHHcCCcccccC------------CCCcchhhc
Q 041815 310 NMDLFRKCIKHVD-MCLRTGKTDNSSVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCKN------------INPDEAVAY 375 (475)
Q Consensus 310 ~~~~~~~i~~~i~-~~l~~~~~~~~~i~~-VvLvGG~s~~p~v~~~l~~~~~~~~v~~~------------~~p~~ava~ 375 (475)
+++.++++.+.++ +.|++++.+ .+++. |+|+||+|++|++++.+++.| +.++... .+|..++|.
T Consensus 289 i~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~-~~~vr~~~P~~~~~~~~~~~~p~~~~a~ 366 (371)
T TIGR01174 289 IEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVF-DNPVRIGLPQNIGGLTEDVNDPEYSTAV 366 (371)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHh-CCCeEEECCCccCCchhhcCCcHHHHHH
Confidence 9999999999997 999998776 56776 999999999999999999999 4433222 267788888
Q ss_pred hHHHH
Q 041815 376 GAAVQ 380 (475)
Q Consensus 376 Gaa~~ 380 (475)
|+++|
T Consensus 367 Gl~~~ 371 (371)
T TIGR01174 367 GLLLY 371 (371)
T ss_pred HHHhC
Confidence 88764
No 32
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.91 E-value=1.4e-22 Score=199.48 Aligned_cols=199 Identities=26% Similarity=0.373 Sum_probs=168.4
Q ss_pred HHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhH
Q 041815 157 SQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGED 236 (475)
Q Consensus 157 ~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 236 (475)
.--+.+.+|++.+|+++..++.+|.|+|.+.+.+.+. +..++++|+||||||+++++-+. +.+.+..++||++
T Consensus 165 ~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~dEk--elGv~lIDiG~GTTdIai~~~G~-----l~~~~~ipvgG~~ 237 (418)
T COG0849 165 NILENLEKCVERAGLKVDNIVLEPLASALAVLTEDEK--ELGVALIDIGGGTTDIAIYKNGA-----LRYTGVIPVGGDH 237 (418)
T ss_pred HHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcccH--hcCeEEEEeCCCcEEEEEEECCE-----EEEEeeEeeCccH
Confidence 4478899999999999999999999999998877655 88999999999999999999766 6667779999999
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC------ceeEEEEeccccCccceEEEcHHHHHHHH
Q 041815 237 FDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST------SQTTIEIDSLYEGIDFSSVMTRARFEELN 310 (475)
Q Consensus 237 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~------~~~~~~i~~~~~~~~~~~~itr~~~~~~~ 310 (475)
++..|+.-|.-.+. .||+.|...... ....+.++...+.. ...+|++++.+++
T Consensus 238 vT~DIa~~l~t~~~-------------------~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~~~--~~~~t~~~ls~II 296 (418)
T COG0849 238 VTKDIAKGLKTPFE-------------------EAERIKIKYGSALISLADDEETIEVPSVGSDI--PRQVTRSELSEII 296 (418)
T ss_pred HHHHHHHHhCCCHH-------------------HHHHHHHHcCccccCcCCCcceEecccCCCcc--cchhhHHHHHHHH
Confidence 99999998866554 788888886543 34456666654443 6789999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccc--c----------CCCCcchhhchHH
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLC--K----------NINPDEAVAYGAA 378 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~--~----------~~~p~~ava~Gaa 378 (475)
++.+.+++++++..|++.+....-...|+|+||++.+|++.+..++.|+ .+++ . ..+|..+.|.|..
T Consensus 297 ~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~-~~vRig~P~~~~Gl~d~~~~p~fs~avGl~ 375 (418)
T COG0849 297 EARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFG-RPVRLGVPLNIVGLTDIARNPAFSTAVGLL 375 (418)
T ss_pred HhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcC-CceEeCCCccccCchhhccCchhhhhHHHH
Confidence 9999999999999999999887778999999999999999999999994 3221 1 2378999999999
Q ss_pred HHHHHH
Q 041815 379 VQAAVL 384 (475)
Q Consensus 379 ~~a~~~ 384 (475)
+++...
T Consensus 376 ~~~~~~ 381 (418)
T COG0849 376 LYGALM 381 (418)
T ss_pred HHHhhc
Confidence 998864
No 33
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.81 E-value=7.1e-19 Score=176.15 Aligned_cols=300 Identities=19% Similarity=0.188 Sum_probs=187.4
Q ss_pred EEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcC----------CcEEecHHHHHhhhhCCCceecccHHhhC
Q 041815 9 AIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTD----------KECFVGDAAKNQVAMNPTNTVFDAKRLIG 78 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~----------~~~~~G~~A~~~~~~~~~~~~~~~k~~lg 78 (475)
.|.||+||.++++++..++.|..+ +||+++... ...++|++|...... +
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~---~---------- 59 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVV--------FPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL---G---------- 59 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceE--------eeccceeecCcccccccCCCceEEchhhhhCCCC---c----------
Confidence 378999999999999866644333 367766532 346678776542110 0
Q ss_pred CCCCChhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHH
Q 041815 79 RRFGDVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQ 158 (475)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~ 158 (475)
....+|++ +|. +.--+.+..+++++...... .......+++++|..++..+
T Consensus 60 ----------~~~~~P~~---------------~G~---i~d~~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~ 110 (371)
T cd00012 60 ----------LELIYPIE---------------HGI---VVDWDDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSN 110 (371)
T ss_pred ----------eEEccccc---------------CCE---EeCHHHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHH
Confidence 00111211 121 12223334455554432111 11234568999999999888
Q ss_pred HHHHHH-HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHH
Q 041815 159 RQATKD-AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDF 237 (475)
Q Consensus 159 r~~l~~-a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~i 237 (475)
|+.+.+ +.+..|++.+.++++|.+|+++++ ..+.+|||+|+++|+++.+.- |..- .......++||+++
T Consensus 111 r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~i~pv~~--G~~~-~~~~~~~~~GG~~l 180 (371)
T cd00012 111 REKTTEIMFETFNVPALYVAIQAVLSLYASG-------RTTGLVVDSGDGVTHVVPVYD--GYVL-PHAIKRLDLAGRDL 180 (371)
T ss_pred HHHHHHHhhccCCCCEEEEechHHHHHHhcC-------CCeEEEEECCCCeeEEEEEEC--CEEc-hhhheeccccHHHH
Confidence 888866 477799999999999999999886 368899999999999988774 3221 12234478999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC-----------------ceeEEEEeccccCccceEE
Q 041815 238 DNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST-----------------SQTTIEIDSLYEGIDFSSV 300 (475)
Q Consensus 238 d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~-----------------~~~~~~i~~~~~~~~~~~~ 300 (475)
|+.|.++|..+.. ..+...... .++..|+.+..- ....+.+| ++ ..+.
T Consensus 181 ~~~l~~~l~~~~~---~~~~~~~~~-------~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lp---d~--~~i~ 245 (371)
T cd00012 181 TRYLKELLRERGY---ELNSSDERE-------IVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELP---DG--RTIK 245 (371)
T ss_pred HHHHHHHHHhcCC---CccchhHHH-------HHHHHHHhheeecCCHHHHHHhhhccCCccceeEECC---CC--eEEE
Confidence 9999998865431 011111122 344444442211 01111111 22 2345
Q ss_pred EcHHHH---HHHHHHH-----HHHHHHHHHHHHHhCCC--CCCCCCeEEEecCCCCcHHHHHHHHHHcC----C-----c
Q 041815 301 MTRARF---EELNMDL-----FRKCIKHVDMCLRTGKT--DNSSVDDVVIVGGSARIPKVQQLLQEFFN----G-----K 361 (475)
Q Consensus 301 itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~v~~~l~~~~~----~-----~ 361 (475)
++.+.| |.++.|. ...+.+.|.++++.... .....+.|+|+||+|++|++.++|.+.+. . .
T Consensus 246 ~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~ 325 (371)
T cd00012 246 VGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKV 325 (371)
T ss_pred EChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEE
Confidence 555433 2244432 33677888888877543 23347889999999999999999998873 1 2
Q ss_pred ccccCCCCcchhhchHHHHHHH
Q 041815 362 RLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 362 ~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
.+....+|..++.+||+++|..
T Consensus 326 ~~~~~~~~~~~aw~G~si~as~ 347 (371)
T cd00012 326 KVIAPPERKYSVWLGGSILASL 347 (371)
T ss_pred EEccCCCccccEEeCchhhcCc
Confidence 3445668999999999999854
No 34
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.79 E-value=3.1e-18 Score=171.67 Aligned_cols=298 Identities=19% Similarity=0.204 Sum_probs=183.5
Q ss_pred CEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC---------cEEecHHHHHhhhhCCCceecccHHhhC
Q 041815 8 PAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK---------ECFVGDAAKNQVAMNPTNTVFDAKRLIG 78 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~~lg 78 (475)
..|+||+||.++++++..+..|.++ +||+++...+ ..++|++|.... ...
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQVV--------FPSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcEE--------ccceeeEecccccccCCCcceEecchhhhcC----CCc---------
Confidence 4789999999999999866655544 3888887432 245677663211 000
Q ss_pred CCCCChhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcC--CCCCeEEEEeCCCCCH
Q 041815 79 RRFGDVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVG--SPVSNAVVTVPAYFTD 156 (475)
Q Consensus 79 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~--~~~~~~vitVP~~~~~ 156 (475)
...+|++ +|. +.--+.+..+++++... .++ ..-..++++.|...+.
T Consensus 61 -----------~~~~P~~---------------~G~---i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~ 108 (373)
T smart00268 61 -----------ELKYPIE---------------HGI---VENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPK 108 (373)
T ss_pred -----------eecCCCc---------------CCE---EeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCH
Confidence 0111221 111 22234445566655542 222 2234689999999989
Q ss_pred HHHHHHHHHH-HHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchh
Q 041815 157 SQRQATKDAG-AMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGE 235 (475)
Q Consensus 157 ~~r~~l~~a~-~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~ 235 (475)
.+|+.+.+.+ +..|++.+.++++|.+|+++++ ..+.+|||+|+++|+++.+.- |.. +.......++||+
T Consensus 109 ~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~~--G~~-~~~~~~~~~~GG~ 178 (373)
T smart00268 109 SNREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVVD--GYV-LPHAIKRIDIAGR 178 (373)
T ss_pred HHHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEEC--CEE-chhhheeccCcHH
Confidence 9999987775 6779999999999999999986 568899999999999998873 322 1222234689999
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC-------------------CceeEEEEeccccCcc
Q 041815 236 DFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSS-------------------TSQTTIEIDSLYEGID 296 (475)
Q Consensus 236 ~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~-------------------~~~~~~~i~~~~~~~~ 296 (475)
++|+.|.++|...- .......+. ..++..|+.+.. .....+.+ .++..
T Consensus 179 ~l~~~l~~~l~~~~---~~~~~~~~~-------~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l---pdg~~ 245 (373)
T smart00268 179 DLTDYLKELLSERG---YQFNSSAEF-------EIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYEL---PDGNT 245 (373)
T ss_pred HHHHHHHHHHHhcC---CCCCcHHHH-------HHHHHhhhheeeecCChHHHHHHhhhcccccccceeEEC---CCCCE
Confidence 99999998886510 000111111 223333433211 01111222 12322
Q ss_pred ceEEEcHHHH---HHHHHHH-----HHHHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHHHHHHHHcC-------
Q 041815 297 FSSVMTRARF---EELNMDL-----FRKCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQQLLQEFFN------- 359 (475)
Q Consensus 297 ~~~~itr~~~---~~~~~~~-----~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~~~------- 359 (475)
+.+..+.| |.++.|. ...+.+.|.++|+.+..+ ..-.++|+|+||+|++|++.++|.+.+.
T Consensus 246 --~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~ 323 (373)
T smart00268 246 --IKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKL 323 (373)
T ss_pred --EEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCc
Confidence 23333222 2233331 235777777777765322 2235789999999999999999998772
Q ss_pred CcccccCCCCcchhhchHHHHHHH
Q 041815 360 GKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 360 ~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
...+..+.++..++..||+++|..
T Consensus 324 ~v~v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 324 KVKVIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred eeEEecCCCCccceEeCcccccCc
Confidence 123444557788999999988753
No 35
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.76 E-value=1.3e-18 Score=149.19 Aligned_cols=197 Identities=22% Similarity=0.327 Sum_probs=157.2
Q ss_pred HHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeC
Q 041815 126 MVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLG 205 (475)
Q Consensus 126 ~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~G 205 (475)
.+.+++++.+++++|...++..-++|+.-.....+...+..+.||++++.+++||+|||.-..++. -.|+|+|
T Consensus 76 eiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d-------g~VVDiG 148 (277)
T COG4820 76 EIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD-------GGVVDIG 148 (277)
T ss_pred HHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC-------CcEEEeC
Confidence 466888999999999999999999999887777888888999999999999999999998766553 3599999
Q ss_pred CCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeE
Q 041815 206 GGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTT 285 (475)
Q Consensus 206 ggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~ 285 (475)
||||-+|+++-++ ...+.+.+.||.+++-.|+-.. +++ .+++|..|+.-..
T Consensus 149 GGTTGIsi~kkGk-----Viy~ADEpTGGtHmtLvlAG~y--------gi~-----------~EeAE~~Kr~~k~----- 199 (277)
T COG4820 149 GGTTGISIVKKGK-----VIYSADEPTGGTHMTLVLAGNY--------GIS-----------LEEAEQYKRGHKK----- 199 (277)
T ss_pred CCcceeEEEEcCc-----EEEeccCCCCceeEEEEEeccc--------CcC-----------HhHHHHhhhcccc-----
Confidence 9999999999777 4455668899998876554322 111 2366666653110
Q ss_pred EEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCccccc
Q 041815 286 IEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK 365 (475)
Q Consensus 286 ~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~ 365 (475)
.+|+-..++|+++++.+.+++.++..+ +..+.|+||+|.-|.+.+.+++.| +.++..
T Consensus 200 -----------------~~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l-~l~v~~ 256 (277)
T COG4820 200 -----------------GEEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL-ALQVHL 256 (277)
T ss_pred -----------------chhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh-cccccc
Confidence 123334578999999999999988744 668999999999999999999999 889999
Q ss_pred CCCCcchhhchHHHHH
Q 041815 366 NINPDEAVAYGAAVQA 381 (475)
Q Consensus 366 ~~~p~~ava~Gaa~~a 381 (475)
+..|....-+|.|+-+
T Consensus 257 P~~p~y~TPLgIA~sg 272 (277)
T COG4820 257 PQHPLYMTPLGIASSG 272 (277)
T ss_pred CCCcceechhhhhhcc
Confidence 9999888888877643
No 36
>PTZ00280 Actin-related protein 3; Provisional
Probab=99.73 E-value=6.2e-16 Score=156.69 Aligned_cols=226 Identities=17% Similarity=0.130 Sum_probs=143.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCC---CCceEEEEEeCCCceEEEEEEEeCC
Q 041815 144 SNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKAT---SEKNVLIFDLGGGTFDVSLLTIEKG 219 (475)
Q Consensus 144 ~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~---~~~~vlvvD~Gggt~dvsv~~~~~~ 219 (475)
..+++|.|..++..+|+.+.+. .+..+.+.+.+..+|.++++++....... ...+-+|||+|+++|+++.+.- |
T Consensus 103 ~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~--G 180 (414)
T PTZ00280 103 HYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD--G 180 (414)
T ss_pred CceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC--C
Confidence 4589999999999999998666 45669999999999999999874432210 1456799999999999887763 3
Q ss_pred eEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC--------------C---c
Q 041815 220 IFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSS--------------T---S 282 (475)
Q Consensus 220 ~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--------------~---~ 282 (475)
..-.-+. ....+||.++++.|.++|.++.. .+... .....++..|+.+.- . .
T Consensus 181 ~~l~~~~-~~~~~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~ 249 (414)
T PTZ00280 181 YVIGSSI-KHIPLAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNH 249 (414)
T ss_pred EEcccce-EEecCcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccc
Confidence 3211122 23589999999999998865321 11111 011234444444321 0 0
Q ss_pred eeEEEEeccccCccceEEEcHHHHH---HHHHHHH------HHHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHH
Q 041815 283 QTTIEIDSLYEGIDFSSVMTRARFE---ELNMDLF------RKCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQ 351 (475)
Q Consensus 283 ~~~~~i~~~~~~~~~~~~itr~~~~---~~~~~~~------~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~ 351 (475)
...+..+....+....+.+..+.|. -++.|-+ ..+.+.|.+.|.++..+ ..-.++|+|+||+|++|++.
T Consensus 250 ~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~ 329 (414)
T PTZ00280 250 FKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFD 329 (414)
T ss_pred cceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHH
Confidence 1123333222233446777777664 3454522 14667777887775432 33467899999999999999
Q ss_pred HHHHHHcCCc-----------------------ccccCCCCcchhhchHHHHHH
Q 041815 352 QLLQEFFNGK-----------------------RLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 352 ~~l~~~~~~~-----------------------~v~~~~~p~~ava~Gaa~~a~ 382 (475)
++|++.+... ++..+.+...++.+|++++|.
T Consensus 330 eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas 383 (414)
T PTZ00280 330 KRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLAS 383 (414)
T ss_pred HHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhccc
Confidence 9999877321 112222334677888888874
No 37
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.72 E-value=2.3e-15 Score=147.99 Aligned_cols=206 Identities=16% Similarity=0.211 Sum_probs=138.4
Q ss_pred EEEEeCCCCCHHH-HHHHHHHHHHc------------CCceeeeeechHHHHHHhhhccCC------CCCceEEEEEeCC
Q 041815 146 AVVTVPAYFTDSQ-RQATKDAGAMA------------GLNVLKIISEPTAAAIAYGLDRKA------TSEKNVLIFDLGG 206 (475)
Q Consensus 146 ~vitVP~~~~~~~-r~~l~~a~~~a------------gl~~~~~i~Ep~Aaa~~~~~~~~~------~~~~~vlvvD~Gg 206 (475)
+++..|..+-..+ ++.+++..... .++.+.+++||.+|.+.+..+... .....++|||+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 4458998764344 36676655321 124578899999999888765321 1356789999999
Q ss_pred CceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEE
Q 041815 207 GTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTI 286 (475)
Q Consensus 207 gt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~ 286 (475)
+|||++++. ++.+. ...++....|..++.+.|.+.+..+.. + ...+...+ +++ |... .+
T Consensus 195 ~TtD~~v~~--~~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~--~~~~~~~i-------e~~---l~~g---~i 253 (344)
T PRK13917 195 GTTDLDTIQ--NLKRV-EEESFVIPKGTIDVYKRIASHISKKEE---G--ASITPYML-------EKG---LEYG---AC 253 (344)
T ss_pred CcEEEEEEe--CcEEc-ccccccccchHHHHHHHHHHHHHhhCC---C--CCCCHHHH-------HHH---HHcC---cE
Confidence 999999986 33332 333445788999999999888854321 1 12222222 222 1111 11
Q ss_pred EEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccC
Q 041815 287 EIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN 366 (475)
Q Consensus 287 ~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~ 366 (475)
.+. .+.. +.+ ++++.++++++++++.+.++..+.+ ..+++.|+|+||++++ +++.|++.|+.. ...
T Consensus 254 ~~~---~~~~--id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~~lk~~f~~~--~~~ 319 (344)
T PRK13917 254 KLN---QKTV--IDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFDSLSHWYSDV--EKA 319 (344)
T ss_pred EeC---CCce--Eeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHHHHHHHcCCe--EEc
Confidence 111 1111 222 4567788999999998888888764 2468999999999986 899999999754 566
Q ss_pred CCCcchhhchHHHHHHHHcC
Q 041815 367 INPDEAVAYGAAVQAAVLSG 386 (475)
Q Consensus 367 ~~p~~ava~Gaa~~a~~~~~ 386 (475)
.||+.|.|+|...+|..+.+
T Consensus 320 ~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 320 DESQFANVRGYYKYGELLKN 339 (344)
T ss_pred CChHHHHHHHHHHHHHHHhc
Confidence 79999999999999987765
No 38
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=99.64 E-value=3.5e-15 Score=150.80 Aligned_cols=310 Identities=19% Similarity=0.217 Sum_probs=179.1
Q ss_pred CCEEEEecCCccEEEEEEECCcEEEEecCCCCcccceEEEEcCC-----cEEecHHHHHhhhhCCCceecccHHhhCCCC
Q 041815 7 APAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDK-----ECFVGDAAKNQVAMNPTNTVFDAKRLIGRRF 81 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g~~~vi~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~ 81 (475)
..+|-||+|+.++++++..+..|..+ +||+++.... ...+|..+... .+...
T Consensus 4 ~~~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~------------ 60 (393)
T PF00022_consen 4 NKPVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSNLE------------ 60 (393)
T ss_dssp SSEEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTGEE------------
T ss_pred CCEEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhhee------------
Confidence 57899999999999999755555443 4888877433 35678764331 00000
Q ss_pred CChhhhhcccccCeEEEecCCCCceEEEeeCCceeeeeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHH
Q 041815 82 GDVSVQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQA 161 (475)
Q Consensus 82 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~ 161 (475)
...|++ +|. +.--+.+..+++++.... -........++++.|..++...|+.
T Consensus 61 ---------~~~p~~---------------~g~---i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~ 112 (393)
T PF00022_consen 61 ---------LRSPIE---------------NGV---IVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREK 112 (393)
T ss_dssp ---------EEESEE---------------TTE---ESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHH
T ss_pred ---------eeeecc---------------ccc---cccccccccccccccccc-cccccccceeeeeccccCCchhhhh
Confidence 001110 111 122234445555554421 1112234569999999999999998
Q ss_pred HHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHH
Q 041815 162 TKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNR 240 (475)
Q Consensus 162 l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~ 240 (475)
+.+. .+..+++.+.+++++.+|+++++ ..+-+|||+|.+.|.++.+. +|..- ........+||+++++.
T Consensus 113 l~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~tglVVD~G~~~t~v~pV~--dG~~~-~~~~~~~~~GG~~lt~~ 182 (393)
T PF00022_consen 113 LAEILFEKFGVPSVYFIPSPLLALYASG-------RTTGLVVDIGYSSTSVVPVV--DGYVL-PHSIKRSPIGGDDLTEY 182 (393)
T ss_dssp HHHHHHHTS--SEEEEEEHHHHHHHHTT-------BSSEEEEEESSS-EEEEEEE--TTEE--GGGBEEES-SHHHHHHH
T ss_pred hhhhhhcccccceeeeeecccccccccc-------cccccccccceeeeeeeeee--ecccc-ccccccccccHHHHHHH
Confidence 7555 56789999999999999999887 34679999999999987764 44321 11122368999999999
Q ss_pred HHHHHHHHHHhhcc-CCCC------CCHHHHHHHHHHHHHHHHHh---------------cCCceeEEEEeccccCccce
Q 041815 241 MVNHFIQEFKRKTE-KDIS------GSPRAVQRLRKDCERAKRIL---------------SSTSQTTIEIDSLYEGIDFS 298 (475)
Q Consensus 241 l~~~l~~~~~~~~~-~~~~------~~~~~~~~l~~~~e~~K~~l---------------s~~~~~~~~i~~~~~~~~~~ 298 (475)
|.+.|..+-..-.. .... ........-...++..|+.+ .......+.+| ++. .
T Consensus 183 l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP---dg~--~ 257 (393)
T PF00022_consen 183 LKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP---DGQ--T 257 (393)
T ss_dssp HHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T---TSS--E
T ss_pred HHHHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc---ccc--c
Confidence 99988773110000 0000 00000001111223333321 12233344443 332 4
Q ss_pred EEEcHHHHH--H-HHHHHH------------HHHHHHHHHHHHhCCCCC--CCCCeEEEecCCCCcHHHHHHHHHHcC--
Q 041815 299 SVMTRARFE--E-LNMDLF------------RKCIKHVDMCLRTGKTDN--SSVDDVVIVGGSARIPKVQQLLQEFFN-- 359 (475)
Q Consensus 299 ~~itr~~~~--~-~~~~~~------------~~i~~~i~~~l~~~~~~~--~~i~~VvLvGG~s~~p~v~~~l~~~~~-- 359 (475)
+.+..+.|. + ++.|.. ..+.+.|.+++..+..+. .-.+.|+|+||+|++|++.++|.+.+.
T Consensus 258 i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~ 337 (393)
T PF00022_consen 258 IILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSL 337 (393)
T ss_dssp EEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHhhhh
Confidence 555554442 2 233322 157788888888765332 225799999999999999999988773
Q ss_pred -----CcccccCC-CCcchhhchHHHHHH
Q 041815 360 -----GKRLCKNI-NPDEAVAYGAAVQAA 382 (475)
Q Consensus 360 -----~~~v~~~~-~p~~ava~Gaa~~a~ 382 (475)
..++..+. +|..++.+||+++|.
T Consensus 338 ~~~~~~~~v~~~~~~~~~~aW~Ggsilas 366 (393)
T PF00022_consen 338 LPSSTKVKVIAPPSDRQFAAWIGGSILAS 366 (393)
T ss_dssp SGTTSTEEEE--T-TTTSHHHHHHHHHHT
T ss_pred hhccccceeccCchhhhhcccccceeeec
Confidence 23455555 899999999999986
No 39
>PTZ00004 actin-2; Provisional
Probab=99.64 E-value=2.6e-14 Score=143.01 Aligned_cols=215 Identities=13% Similarity=0.152 Sum_probs=141.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 143 VSNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 143 ~~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
...+++|.|..++..+|+.+.+. .+..+++.+.+.++|.+++++++ ..+-+|||+|.+.|+++.+. +|..
T Consensus 101 ~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g-------~~tglVVDiG~~~t~v~pV~--dG~~ 171 (378)
T PTZ00004 101 EHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIY--EGYS 171 (378)
T ss_pred cCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcC-------CceEEEEECCCCcEEEEEEE--CCEE
Confidence 34578999999999999887555 66789999999999999998875 35779999999999987766 3433
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhc---------------CCc--ee
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILS---------------STS--QT 284 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls---------------~~~--~~ 284 (475)
-.-+ ....++||.++++.|.+.|..+. .......... .++..|+.+. ... ..
T Consensus 172 l~~~-~~~~~~GG~~lt~~L~~lL~~~~---~~~~~~~~~~-------~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (378)
T PTZ00004 172 LPHA-IHRLDVAGRDLTEYMMKILHERG---TTFTTTAEKE-------IVRDIKEKLCYIALDFDEEMGNSAGSSDKYEE 240 (378)
T ss_pred eecc-eeeecccHHHHHHHHHHHHHhcC---CCCCcHHHHH-------HHHHHhhcceeecCCHHHHHhhhhcCccccce
Confidence 2222 23368999999999999885431 1111111111 2333333321 000 12
Q ss_pred EEEEeccccCccceEEEcHHHH---HHHHHHH------HHHHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHHHH
Q 041815 285 TIEIDSLYEGIDFSSVMTRARF---EELNMDL------FRKCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQQL 353 (475)
Q Consensus 285 ~~~i~~~~~~~~~~~~itr~~~---~~~~~~~------~~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~ 353 (475)
.+.+| +|. .+.+..+.| |-++.|- ...+.+.|.+++.++..+ ..-..+|+|+||+|.+|++.++
T Consensus 241 ~y~lP---dg~--~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~R 315 (378)
T PTZ00004 241 SYELP---DGT--IITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPER 315 (378)
T ss_pred EEECC---CCC--EEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHH
Confidence 22222 332 344555554 2345553 234667777777765432 3346789999999999999999
Q ss_pred HHHHcC-------CcccccCCCCcchhhchHHHHHH
Q 041815 354 LQEFFN-------GKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 354 l~~~~~-------~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
|.+.+. ..++..+.++..++.+||+++|.
T Consensus 316 L~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas 351 (378)
T PTZ00004 316 LTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSS 351 (378)
T ss_pred HHHHHHHhCCCCccEEEecCCCCceeEEECcccccC
Confidence 998772 12455556788999999999975
No 40
>PTZ00452 actin; Provisional
Probab=99.64 E-value=2.8e-14 Score=142.23 Aligned_cols=215 Identities=13% Similarity=0.124 Sum_probs=140.4
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 143 VSNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 143 ~~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
...+++|-|..++..+|+.+.+. .+..+.+.+.+.+.+.+++++++ ..+-+|||+|.+.|+++-+. +|..
T Consensus 100 ~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g-------~~tglVVDiG~~~t~v~PV~--dG~~ 170 (375)
T PTZ00452 100 DQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSG-------KTIGLVVDSGEGVTHCVPVF--EGHQ 170 (375)
T ss_pred cCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCC-------CceeeeecCCCCcceEEEEE--CCEE
Confidence 45689999999999999998665 56678899999999999998865 35779999999999987666 4433
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC--------------C--ceeE
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSS--------------T--SQTT 285 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~--------------~--~~~~ 285 (475)
-.-+.. ...+||.++++.|.+.|..+ +..+... ... ..++..|+.+.- . ....
T Consensus 171 l~~~~~-r~~~gG~~lt~~L~~lL~~~-----~~~~~~~-~~~----~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~ 239 (375)
T PTZ00452 171 IPQAIT-KINLAGRLCTDYLTQILQEL-----GYSLTEP-HQR----IIVKNIKERLCYTALDPQDEKRIYKESNSQDSP 239 (375)
T ss_pred eccceE-EeeccchHHHHHHHHHHHhc-----CCCCCCH-HHH----HHHHHHHHHhccccCcHHHHHHHhhccCCcCce
Confidence 222222 35799999999998887432 1111111 000 112333333210 0 1112
Q ss_pred EEEeccccCccceEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCC--CCCCCCeEEEecCCCCcHHHHHHHH
Q 041815 286 IEIDSLYEGIDFSSVMTRARF---EELNMDLF-----RKCIKHVDMCLRTGKT--DNSSVDDVVIVGGSARIPKVQQLLQ 355 (475)
Q Consensus 286 ~~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~--~~~~i~~VvLvGG~s~~p~v~~~l~ 355 (475)
..+| +|. .+.+..+.| |-+++|.+ ..+.+.+.+.+..+.. ...-.++|+|+||+|.+|++.++|+
T Consensus 240 y~LP---Dg~--~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~ 314 (375)
T PTZ00452 240 YKLP---DGN--ILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLS 314 (375)
T ss_pred EECC---CCC--EEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHH
Confidence 2222 332 345666555 23444432 2466777777776543 2344789999999999999999999
Q ss_pred HHcC-----C--cccccCCCCcchhhchHHHHHH
Q 041815 356 EFFN-----G--KRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 356 ~~~~-----~--~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
+.+. . .++..+.++..++.+|++++|.
T Consensus 315 ~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilas 348 (375)
T PTZ00452 315 NELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCT 348 (375)
T ss_pred HHHHHhCCCCceeEEecCCCcceeEEECchhhcC
Confidence 8762 1 2344455777899999999985
No 41
>PTZ00281 actin; Provisional
Probab=99.63 E-value=1.4e-14 Score=144.73 Aligned_cols=215 Identities=14% Similarity=0.157 Sum_probs=140.5
Q ss_pred CCeEEEEeCCCCCHHHHHHHHH-HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 143 VSNAVVTVPAYFTDSQRQATKD-AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 143 ~~~~vitVP~~~~~~~r~~l~~-a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
...+++|-|..++..+|+.+.+ ..+..+++.+.+..+|.+++++++ ..+-+|||+|.+.|.++-+.-+. .
T Consensus 101 ~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g-------~~tglVVDiG~~~t~v~PV~dG~--~ 171 (376)
T PTZ00281 101 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-------RTTGIVMDSGDGVSHTVPIYEGY--A 171 (376)
T ss_pred cCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcC-------CceEEEEECCCceEEEEEEEecc--c
Confidence 3568889999999999999866 567789999999999999998875 34779999999999987665432 2
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC----------------ceeE
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST----------------SQTT 285 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----------------~~~~ 285 (475)
- .......++||.++++.|.+.|..+- ..+.. ... .+.++..|+.+.-- ....
T Consensus 172 ~-~~~~~~~~~GG~~lt~~L~~lL~~~~-----~~~~~-~~~----~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~ 240 (376)
T PTZ00281 172 L-PHAILRLDLAGRDLTDYMMKILTERG-----YSFTT-TAE----REIVRDIKEKLAYVALDFEAEMQTAASSSALEKS 240 (376)
T ss_pred c-hhheeeccCcHHHHHHHHHHHHHhcC-----CCCCc-HHH----HHHHHHHHHhcEEecCCchHHHHhhhcCccccee
Confidence 1 22223368999999999998875431 11111 100 11244444443210 0112
Q ss_pred EEEeccccCccceEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHHHHHH
Q 041815 286 IEIDSLYEGIDFSSVMTRARF---EELNMDLF-----RKCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQQLLQ 355 (475)
Q Consensus 286 ~~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~ 355 (475)
..+ .++. .+.+..+.| |.++.|.+ ..+.+.|.+++..+..+ ..-.++|+|+||+|.+|++.++|+
T Consensus 241 y~L---Pdg~--~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~ 315 (376)
T PTZ00281 241 YEL---PDGQ--VITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMN 315 (376)
T ss_pred EEC---CCCC--EEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHH
Confidence 222 2232 345555444 33454432 24566777777765432 233679999999999999999998
Q ss_pred HHcC-------CcccccCCCCcchhhchHHHHHH
Q 041815 356 EFFN-------GKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 356 ~~~~-------~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
+.+. ..++..+.++..++.+|++++|.
T Consensus 316 ~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilas 349 (376)
T PTZ00281 316 KELTALAPSTMKIKIIAPPERKYSVWIGGSILAS 349 (376)
T ss_pred HHHHHhCCCCcceEEecCCCCceeEEECcccccC
Confidence 8762 12355556778999999999985
No 42
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=99.61 E-value=1.1e-13 Score=137.46 Aligned_cols=179 Identities=16% Similarity=0.172 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCceeeeeechHHHHHHhh-----hccCCCCCc-eEEEEEeCCCceEEEEEEEeCCeEEEEEEcCC
Q 041815 156 DSQRQATKDAGAMAGLNVLKIISEPTAAAIAYG-----LDRKATSEK-NVLIFDLGGGTFDVSLLTIEKGIFKVKATAGD 229 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~-----~~~~~~~~~-~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~ 229 (475)
....+.+.++++.||++...+..+|.|.+-.+. ..... ... .++++|+|+++|+++++.-+. +...+.
T Consensus 142 ~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~-~~~~~~~lvdiG~~~t~l~i~~~g~-----~~~~r~ 215 (348)
T TIGR01175 142 KEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASRT-YRLTDAALVDIGATSSTLNLLHPGR-----MLFTRE 215 (348)
T ss_pred HHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCcccc-ccCceEEEEEECCCcEEEEEEECCe-----EEEEEE
Confidence 466788899999999999999999999877663 11111 233 499999999999999998665 455666
Q ss_pred CCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHH
Q 041815 230 THLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEEL 309 (475)
Q Consensus 230 ~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~ 309 (475)
..+||.++++.+.+.+.-. .++||+.|....... . .-.++
T Consensus 216 i~~G~~~i~~~i~~~~~~~-------------------~~~Ae~~k~~~~~~~-----------~----------~~~~~ 255 (348)
T TIGR01175 216 VPFGTRQLTSELSRAYGLN-------------------PEEAGEAKQQGGLPL-----------L----------YDPEV 255 (348)
T ss_pred eechHHHHHHHHHHHcCCC-------------------HHHHHHHHhcCCCCC-----------c----------hhHHH
Confidence 8999999999987544221 136777776432110 0 01234
Q ss_pred HHHHHHHHHHHHHHHHHhC--CCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccC-------------------CC
Q 041815 310 NMDLFRKCIKHVDMCLRTG--KTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN-------------------IN 368 (475)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~--~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~-------------------~~ 368 (475)
+++.++++...|++.|+-. ......++.|+|+||+++++.+.+.+++.| +.++..- .+
T Consensus 256 ~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l-~~~v~~~~P~~~~~~~~~~~~~~~~~~~ 334 (348)
T TIGR01175 256 LRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRL-GLPTEVANPFALMALDAKVDAGRLAVDA 334 (348)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHH-CCCeEecChHHhcccCccCCHHHHHhhh
Confidence 5666666666666666531 223345899999999999999999999999 4433221 24
Q ss_pred CcchhhchHHHHH
Q 041815 369 PDEAVAYGAAVQA 381 (475)
Q Consensus 369 p~~ava~Gaa~~a 381 (475)
|..++|.|+|+++
T Consensus 335 ~~~~~a~Glalr~ 347 (348)
T TIGR01175 335 PALMTALGLALRG 347 (348)
T ss_pred HHHHHHhhHhhcC
Confidence 5667777777764
No 43
>PTZ00466 actin-like protein; Provisional
Probab=99.60 E-value=1.4e-13 Score=137.44 Aligned_cols=215 Identities=12% Similarity=0.124 Sum_probs=140.1
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 143 VSNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 143 ~~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
-..+++|-|+.++..+|+.+.+. .+..+++.+.+.+++.+++++++ ..+-+|||+|.+.|.++-+. +|..
T Consensus 106 ~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g-------~~tglVVD~G~~~t~v~PV~--~G~~ 176 (380)
T PTZ00466 106 EHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCG-------KTNGTVLDCGDGVCHCVSIY--EGYS 176 (380)
T ss_pred cCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcC-------CceEEEEeCCCCceEEEEEE--CCEE
Confidence 34688999999999999997554 67788999999999999998875 45789999999999986665 4433
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcC-------------C--ceeEE
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSS-------------T--SQTTI 286 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~-------------~--~~~~~ 286 (475)
-.-+ .....+||.++++.|.+.|.+. ....+...+. +.++..|+.+.- . ....+
T Consensus 177 ~~~~-~~~~~~GG~~lt~~L~~lL~~~---~~~~~~~~~~-------~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y 245 (380)
T PTZ00466 177 ITNT-ITRTDVAGRDITTYLGYLLRKN---GHLFNTSAEM-------EVVKNMKENCCYVSFNMNKEKNSSEKALTTLPY 245 (380)
T ss_pred eecc-eeEecCchhHHHHHHHHHHHhc---CCCCCcHHHH-------HHHHHHHHhCeEecCChHHHHhhccccccceeE
Confidence 2222 2236899999999999887532 1111111111 123334443210 0 01122
Q ss_pred EEeccccCccceEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHHHHHHH
Q 041815 287 EIDSLYEGIDFSSVMTRARF---EELNMDLF-----RKCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQQLLQE 356 (475)
Q Consensus 287 ~i~~~~~~~~~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~ 356 (475)
.+| +|. .+.+..+.| |-++.|-+ ..+.+.|.+.+.++..+ ..-..+|+|+||+|.+|++.++|++
T Consensus 246 ~LP---dg~--~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~ 320 (380)
T PTZ00466 246 ILP---DGS--QILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLN 320 (380)
T ss_pred ECC---CCc--EEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHH
Confidence 222 332 345565555 33444422 24566777777765432 3346899999999999999999998
Q ss_pred HcC-----C--cccccCCCCcchhhchHHHHHH
Q 041815 357 FFN-----G--KRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 357 ~~~-----~--~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
.+. . .++..+.++..++.+|++++|.
T Consensus 321 EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilas 353 (380)
T PTZ00466 321 EIRKFAPKDITIRISAPPERKFSTFIGGSILAS 353 (380)
T ss_pred HHHHhCCCCceEEEecCCCCceeEEECchhhcC
Confidence 772 1 2345556778899999999975
No 44
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=99.60 E-value=6.2e-14 Score=137.07 Aligned_cols=207 Identities=17% Similarity=0.206 Sum_probs=133.7
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHc---------CCceeeeeechHHHHHHhhhccCC--CCCceEEEEEeCCCceE
Q 041815 142 PVSNAVVTVPAYFTDSQRQATKDAGAMA---------GLNVLKIISEPTAAAIAYGLDRKA--TSEKNVLIFDLGGGTFD 210 (475)
Q Consensus 142 ~~~~~vitVP~~~~~~~r~~l~~a~~~a---------gl~~~~~i~Ep~Aaa~~~~~~~~~--~~~~~vlvvD~Gggt~d 210 (475)
.+..+|+..|..+...+++.+++..... -++.+.+++||.+|.+.+..+... .....++|||+|++|||
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3557999999998888899998886532 346688999999998887664321 14677899999999999
Q ss_pred EEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEec
Q 041815 211 VSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDS 290 (475)
Q Consensus 211 vsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~ 290 (475)
+.++. +..+ +...+++...|..++-+.+.+.+.+++. .....+...++. ..+.-| .. .+
T Consensus 181 ~~~~~--~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~~i~~---~l~~g~-------~~--~~-- 239 (320)
T TIGR03739 181 WLVAR--GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDIDRIDL---ALRTGK-------QP--RI-- 239 (320)
T ss_pred eehcc--CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHHHHHH---HHHhCC-------ce--ee--
Confidence 97774 3333 3444555778988888888888876654 211112222221 111111 00 00
Q ss_pred cccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCc
Q 041815 291 LYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPD 370 (475)
Q Consensus 291 ~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~ 370 (475)
.+. .+.|+ +..+.....++++...+.+.+.. ..+++.|+|+||++. .+++.|++.||...+....||+
T Consensus 240 --~gk--~~di~--~~~~~~~~~~~~~v~~i~~~~~~----~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 240 --YQK--PVDIK--RCLELAETVAQQAVSTMMTWIGA----PESIQNIVLVGGGAF--LFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred --cce--ecCch--HHHHHHHHHHHHHHHHHHHhccc----CCcccEEEEeCCcHH--HHHHHHHHHCCCCeeEecCCcH
Confidence 011 11222 22223334444444444444421 245889999999986 7899999999876666778999
Q ss_pred chhhchHHHHH
Q 041815 371 EAVAYGAAVQA 381 (475)
Q Consensus 371 ~ava~Gaa~~a 381 (475)
.|.|+|-..+|
T Consensus 308 ~ANarG~~~~g 318 (320)
T TIGR03739 308 FANVRGFQIAG 318 (320)
T ss_pred HHHHHHHHHhh
Confidence 99999988775
No 45
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=99.57 E-value=3.2e-14 Score=140.49 Aligned_cols=203 Identities=20% Similarity=0.306 Sum_probs=125.3
Q ss_pred HHHHHHHHhhcCCCCCeEEE--------------------EeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhh
Q 041815 129 AKMRDIAEDYVGSPVSNAVV--------------------TVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYG 188 (475)
Q Consensus 129 ~~l~~~a~~~~~~~~~~~vi--------------------tVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~ 188 (475)
+.+...++++++.++.++++ ++| ....+...++++.|||+...+--++.|.+-.+.
T Consensus 92 ~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~----k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~ 167 (340)
T PF11104_consen 92 EAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAP----KEIVESYVELFEEAGLKPVAVDVEAFALARLFE 167 (340)
T ss_dssp HHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEE----HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGH
T ss_pred HHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEc----HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHH
Confidence 44566678887765544433 333 355677889999999999888788888665554
Q ss_pred hcc-C---CCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHH
Q 041815 189 LDR-K---ATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAV 264 (475)
Q Consensus 189 ~~~-~---~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~ 264 (475)
... . ......++++|+|+.+|.+.++.-+. +...+...+||.++++.|.+.+.-.+.
T Consensus 168 ~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~-----~~f~R~i~~G~~~l~~~i~~~~~i~~~-------------- 228 (340)
T PF11104_consen 168 FLEPQLPDEEDAETVALVDIGASSTTVIIFQNGK-----PIFSRSIPIGGNDLTEAIARELGIDFE-------------- 228 (340)
T ss_dssp HHHHTST----T-EEEEEEE-SS-EEEEEEETTE-----EEEEEEES-SHHHHHHHHHHHTT--HH--------------
T ss_pred HHHHhCCcccccceEEEEEecCCeEEEEEEECCE-----EEEEEEEeeCHHHHHHHHHHhcCCCHH--------------
Confidence 421 1 11256899999999999999988544 334556799999999999887644443
Q ss_pred HHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCCCCCCeEEEec
Q 041815 265 QRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRT--GKTDNSSVDDVVIVG 342 (475)
Q Consensus 265 ~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~--~~~~~~~i~~VvLvG 342 (475)
++|..|..-+... +...+.+++.++++.+.|++.++- .......|+.|+|+|
T Consensus 229 -----~Ae~~k~~~~l~~---------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~~I~L~G 282 (340)
T PF11104_consen 229 -----EAEELKRSGGLPE---------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIERIYLSG 282 (340)
T ss_dssp -----HHHHHHHHT---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------SEEEEES
T ss_pred -----HHHHHHhcCCCCc---------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEC
Confidence 6666666421100 223455666666666666666652 223345799999999
Q ss_pred CCCCcHHHHHHHHHHcCCccccc---------CC----------CCcchhhchHHHHH
Q 041815 343 GSARIPKVQQLLQEFFNGKRLCK---------NI----------NPDEAVAYGAAVQA 381 (475)
Q Consensus 343 G~s~~p~v~~~l~~~~~~~~v~~---------~~----------~p~~ava~Gaa~~a 381 (475)
|++++++|.+.|++.+ +.++.. +. .|..++|.|+|+++
T Consensus 283 gga~l~gL~~~l~~~l-~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 283 GGARLPGLAEYLSEEL-GIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp GGGGSTTHHHHHHHHH-TSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CccchhhHHHHHHHHH-CCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 9999999999999999 443321 11 36678999999875
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=99.46 E-value=5.7e-13 Score=129.91 Aligned_cols=174 Identities=20% Similarity=0.299 Sum_probs=102.5
Q ss_pred ceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHh
Q 041815 172 NVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKR 251 (475)
Q Consensus 172 ~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~ 251 (475)
..+.+++|+.||.+.+..+... ...++|||+||+|+|++++.- +.-.+....+...+|-..+-+.+.+.|... .
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~~~--~~~~lVVDIGG~T~Dv~~v~~--~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~-~- 214 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDLDE--DESVLVVDIGGRTTDVAVVRG--GLPDISKCSGTPEIGVSDLYDAIAQALRSA-G- 214 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS-T--TSEEEEEEE-SS-EEEEEEEG--GG--EEEEEEETTSSTHHHHHHHHHHTT---S-
T ss_pred eeEEEEcccHHHHHHHHHhhcc--cCcEEEEEcCCCeEEeeeecC--CccccchhccCCchhHHHHHHHHHHHHHHh-c-
Confidence 5688999999999998777333 568999999999999998862 211122333445789888888887777541 1
Q ss_pred hccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 041815 252 KTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTD 331 (475)
Q Consensus 252 ~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~ 331 (475)
...+......+.+... -+.-++ ......+ ..+++.++++..++++.+.+.+.+.+
T Consensus 215 -----~~~s~~~~~~ii~~~~-~~~~~~----------~~i~~~~-----~~~~v~~~i~~~~~~l~~~i~~~~~~---- 269 (318)
T PF06406_consen 215 -----IDTSELQIDDIIRNRK-DKGYLR----------QVINDED-----VIDDVSEVIEEAVEELINRILRELGD---- 269 (318)
T ss_dssp -----BHHHHHHHHHHHHTTT--HHHHH----------HHSSSHH-----HHHHHHHHHHHHHHHHHHHHHHHHTT----
T ss_pred -----CCCcHHHHHHHHHhhh-ccceec----------ccccchh-----hHHHHHHHHHHHHHHHHHHHHHHHhh----
Confidence 0001111111111000 000000 0000000 13445556666666666666666543
Q ss_pred CCCCCeEEEecCCCCcHHHHHHHHHHcC--CcccccCCCCcchhhchHH
Q 041815 332 NSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAA 378 (475)
Q Consensus 332 ~~~i~~VvLvGG~s~~p~v~~~l~~~~~--~~~v~~~~~p~~ava~Gaa 378 (475)
..+++.|+|+||++. .+.+.|++.|+ ...+....||+.|.|+|-+
T Consensus 270 ~~~~~~I~~vGGGA~--ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 270 FSDIDRIFFVGGGAI--LLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp S-S-SEEEEESTTHH--HHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred hccCCeEEEECCcHH--HHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 245789999999985 89999999985 3567888899999999964
No 47
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton]
Probab=99.39 E-value=3.6e-11 Score=113.59 Aligned_cols=95 Identities=17% Similarity=0.267 Sum_probs=78.0
Q ss_pred CeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEE
Q 041815 144 SNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFK 222 (475)
Q Consensus 144 ~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~ 222 (475)
.-++||-|++-+.+.|+.+.++ .+...++...++.+|+++|++.+ ..+.+|||+|++++.++-+. +|.+-
T Consensus 107 hP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-------rstalVvDiGa~~~svsPV~--DG~Vl 177 (426)
T KOG0679|consen 107 HPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-------RSTALVVDIGATHTSVSPVH--DGYVL 177 (426)
T ss_pred cceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-------CCceEEEEecCCCceeeeee--cceEe
Confidence 4589999999999999887655 67778899999999999999877 66889999999999887665 55554
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHHH
Q 041815 223 VKATAGDTHLGGEDFDNRMVNHFIQE 248 (475)
Q Consensus 223 v~~~~~~~~~GG~~id~~l~~~l~~~ 248 (475)
..+... .++||+.++..+.+.|...
T Consensus 178 qk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 178 QKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred eeeeEe-cccchHHHHHHHHHHHhhc
Confidence 455555 5899999999999988664
No 48
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.32 E-value=3.3e-10 Score=105.69 Aligned_cols=156 Identities=17% Similarity=0.222 Sum_probs=109.3
Q ss_pred HHHHHHHHHHHcCCceeeeeechHHHHHHhhhc-cCCC---CCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCc
Q 041815 158 QRQATKDAGAMAGLNVLKIISEPTAAAIAYGLD-RKAT---SEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLG 233 (475)
Q Consensus 158 ~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~-~~~~---~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~G 233 (475)
......+|.+.|||+...+--|..|.--+|..- .+.. ...+++|+|+|+..+.+.++.-++ .-..+...+|
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk-----~ly~r~~~~g 224 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGK-----ILYTREVPVG 224 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCe-----eeeEeeccCc
Confidence 345568899999999988888888887766521 1111 123478999999999999998766 4456678999
Q ss_pred hhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHH
Q 041815 234 GEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDL 313 (475)
Q Consensus 234 G~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~ 313 (475)
|+.+++.+.+.+.-.+. +++.+|....... +--.++..++
T Consensus 225 ~~Qlt~~i~r~~~L~~~-------------------~a~~~k~~~~~P~---------------------~y~~~vl~~f 264 (354)
T COG4972 225 TDQLTQEIQRAYSLTEE-------------------KAEEIKRGGTLPT---------------------DYGSEVLRPF 264 (354)
T ss_pred HHHHHHHHHHHhCCChh-------------------HhHHHHhCCCCCC---------------------chhHHHHHHH
Confidence 99999998776533221 5666666543221 1113455555
Q ss_pred HHHHHHHHHHHHHh--CCCCCCCCCeEEEecCCCCcHHHHHHHHHHc
Q 041815 314 FRKCIKHVDMCLRT--GKTDNSSVDDVVIVGGSARIPKVQQLLQEFF 358 (475)
Q Consensus 314 ~~~i~~~i~~~l~~--~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~ 358 (475)
++++.+.|++.|+- +.-...+|+.|+|.||++++.++.+.+.+.+
T Consensus 265 ~~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL~~~i~qrl 311 (354)
T COG4972 265 LGELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGLAAAIQQRL 311 (354)
T ss_pred HHHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhHHHHHHHHh
Confidence 65555556555553 2224567999999999999999999999998
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=99.29 E-value=2e-10 Score=115.47 Aligned_cols=193 Identities=18% Similarity=0.206 Sum_probs=118.0
Q ss_pred EEEEecCCccEEEEEEECCcEEEEe-cCCCCcc-cceEEE-EcCCcEEecHHHHHhhhhCCCceecccHHhhCCCCCChh
Q 041815 9 AIGIDLGTTYSCVGVWQHDRVEIIA-NDQGNRT-TPSYVA-FTDKECFVGDAAKNQVAMNPTNTVFDAKRLIGRRFGDVS 85 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~~vi~-~~~g~~~-~Ps~v~-~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~~ 85 (475)
.|.||.||..++++++.+..|..+. +-.+.+. ..++.. -..+...+|+++...... +...
T Consensus 8 ~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~~~~---------------- 70 (444)
T COG5277 8 TIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-SLLE---------------- 70 (444)
T ss_pred eEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-ccce----------------
Confidence 3899999999999999776665543 3333332 222221 113344555555432100 0000
Q ss_pred hhhcccccCeEEEecCCCCceEEEeeCCceeeee-HHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHH
Q 041815 86 VQSDVKLWPFEVVAGPKDKPMIVVNCKGEEKRYA-AEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKD 164 (475)
Q Consensus 86 v~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~-~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~ 164 (475)
.+.|. -+|....|. .++++...+... +..........+++|-|..+..+.|+.+.+
T Consensus 71 -----~~~p~---------------~~g~i~~W~~~e~~w~~~~~~~---~~~~~~~~~~pllltep~~n~~~~re~~~e 127 (444)
T COG5277 71 -----LRYPI---------------ENGIILNWDAMEQIWDYTFFNK---GDLLPSPEEHPLLLTEPPLNPPSNREKITE 127 (444)
T ss_pred -----eeccc---------------ccCccCCcHHHHHHHHHhhcch---hhccCCCcCCceEEeccCCCcHHHHHHHHH
Confidence 00010 113333343 444444444332 111112233468999999999999988744
Q ss_pred -HHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHH
Q 041815 165 -AGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVN 243 (475)
Q Consensus 165 -a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 243 (475)
..+...++.+.+..++.+++++.+.. ..+.+|+|+|.+.|+++-+--+-... -+. ....+||++++..|.+
T Consensus 128 ~~fE~~~vp~~~~~~~~~l~~ya~g~~-----~~~g~ViD~G~~~t~v~PV~DG~~l~--~a~-~ri~~gG~~it~~l~~ 199 (444)
T COG5277 128 LLFETLNVPALYLAIQAVLSLYASGSS-----DETGLVIDSGDSVTHVIPVVDGIVLP--KAV-KRIDIGGRDITDYLKK 199 (444)
T ss_pred HHHHhcCCcceEeeHHHHHHHHhcCCC-----CCceEEEEcCCCceeeEeeecccccc--ccc-eeeecCcHHHHHHHHH
Confidence 57778889999999999998887754 24789999999999987776432211 222 2368999999999999
Q ss_pred HHHHHH
Q 041815 244 HFIQEF 249 (475)
Q Consensus 244 ~l~~~~ 249 (475)
.|....
T Consensus 200 lL~~~~ 205 (444)
T COG5277 200 LLREKY 205 (444)
T ss_pred HHhhcc
Confidence 888743
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=99.27 E-value=2.9e-10 Score=107.09 Aligned_cols=170 Identities=16% Similarity=0.198 Sum_probs=110.6
Q ss_pred eeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhcc
Q 041815 175 KIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTE 254 (475)
Q Consensus 175 ~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 254 (475)
..++|.+|.+.+...-... .=.|+|+||..+-+..+. ++...-....+....|+..|.+.+++.|.-.+
T Consensus 73 ~~~~ei~~~~~g~~~~~~~----~~~vidiGgqd~k~i~~~--~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~~~~----- 141 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAPE----ARGVIDIGGQDSKVIKID--DGKVDDFTMNDKCAAGTGRFLEVTARRLGVSV----- 141 (248)
T ss_pred CceEEhhHHHHHHHHHCCC----CCEEEEecCCeeEEEEEC--CCcEeeeeecCcccccccHHHHHHHHHcCCCH-----
Confidence 4688988877665443322 225999999998887777 56655556777778888889888877663221
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhc----CCceeEEEEec-cccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 041815 255 KDISGSPRAVQRLRKDCERAKRILS----STSQTTIEIDS-LYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGK 329 (475)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~ls----~~~~~~~~i~~-~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~ 329 (475)
++++..+..-. -+....+..+. +... +....++ ++++..+.+.+...+.+.+...+
T Consensus 142 --------------~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~~--l~~g~~~---~di~~~~~~~va~~i~~~~~~~~ 202 (248)
T TIGR00241 142 --------------EELGSLAEKADRKAKISSMCTVFAESELISL--LAAGVKK---EDILAGVYESIAERVAEMLQRLK 202 (248)
T ss_pred --------------HHHHHHHhcCCCCCCcCCEeEEEechhHHHH--HHCCCCH---HHHHHHHHHHHHHHHHHHHhhcC
Confidence 13333333211 11122232221 0000 0011223 45666666666666666665432
Q ss_pred CCCCCCC-eEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHH
Q 041815 330 TDNSSVD-DVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQ 380 (475)
Q Consensus 330 ~~~~~i~-~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~ 380 (475)
++ .|+|+||.++++++.+.+++.+ +.++..+.+|+.+.|+|||++
T Consensus 203 -----~~~~Vvl~GGva~n~~l~~~l~~~l-g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 203 -----IEAPIVFTGGVSKNKGLVKALEKKL-GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred -----CCCCEEEECccccCHHHHHHHHHHh-CCcEEcCCCccHHHHHHHHhC
Confidence 44 7999999999999999999999 889999999999999999973
No 51
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=99.15 E-value=1.3e-09 Score=107.72 Aligned_cols=197 Identities=18% Similarity=0.250 Sum_probs=121.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHH------------cCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEE
Q 041815 146 AVVTVPAYFTDSQRQATKDAGAM------------AGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSL 213 (475)
Q Consensus 146 ~vitVP~~~~~~~r~~l~~a~~~------------agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv 213 (475)
.+||-++ ..+++++++++. ||++...++. |.|++.+.+.+ + ++..++++|+|||||++++
T Consensus 91 hIITg~~----~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse-E--ke~gVa~IDIGgGTT~iaV 162 (475)
T PRK10719 91 VIITGET----ARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE-E--RNTRVLNIDIGGGTANYAL 162 (475)
T ss_pred EEEEech----hHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh-h--ccCceEEEEeCCCceEEEE
Confidence 4667665 456777778776 6666655655 99999888743 3 3889999999999999999
Q ss_pred EEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEecccc
Q 041815 214 LTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYE 293 (475)
Q Consensus 214 ~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~ 293 (475)
+.-+. +...+..++||++++.. -+ +.-...++.. +++.+ .+... +..
T Consensus 163 f~~G~-----l~~T~~l~vGG~~IT~D-~~----------~~i~yis~~~-~~l~~-------~~~~~---------~~~ 209 (475)
T PRK10719 163 FDAGK-----VIDTACLNVGGRLIETD-SQ----------GRVTYISPPG-QMILD-------ELGLA---------ITD 209 (475)
T ss_pred EECCE-----EEEEEEEecccceEEEC-CC----------CCEEEEChHH-HHHHH-------HcCCC---------ccc
Confidence 99766 55666689999998644 10 0000011111 11111 11100 011
Q ss_pred CccceEEEcHHHHHHHHHHHHHHHHHHHH-------HHHHh-CCCC-CCCCCeEEEecCCCCc----------------H
Q 041815 294 GIDFSSVMTRARFEELNMDLFRKCIKHVD-------MCLRT-GKTD-NSSVDDVVIVGGSARI----------------P 348 (475)
Q Consensus 294 ~~~~~~~itr~~~~~~~~~~~~~i~~~i~-------~~l~~-~~~~-~~~i~~VvLvGG~s~~----------------p 348 (475)
| -.++.+++..+++...+.+.+.+. +.|-. -.++ ...++.|.++||-+.. |
T Consensus 210 G----~~~~~~~L~~i~~~Ma~~l~~~i~~~~~~~~~~l~~~~~l~~~~~~~~i~fSGGVad~iy~~~~~~~f~yGDiG~ 285 (475)
T PRK10719 210 G----RSLTGEQLQQVTRRMAELLVEVIGGALSPLAQALMTTKLLPAGVPPEIITFSGGVGDCIYRHQPADPFRYGDIGP 285 (475)
T ss_pred c----ccCCHHHHHHHHHHHHHHHHHHhCCCCChhHHhhccCCCCCCCCCCCEEEEecchHhheecCCcCCccccCcHHH
Confidence 1 245667777777776666666554 11111 1222 3568999999998875 3
Q ss_pred HHHHHHHHHc--CCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 349 KVQQLLQEFF--NGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 349 ~v~~~l~~~~--~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.+-++|++.. ...++..+.+.--|.++||-.+...+||+
T Consensus 286 lLg~ai~~~~~~~~~~v~~p~eTiRATViGAG~htt~iSGS 326 (475)
T PRK10719 286 LLATALHEHPRLREMNVQFPAETVRATVIGAGAHTTELSGS 326 (475)
T ss_pred HHHHHHhhChhcccCcEeCCCCcceeEEEecCcceeEEEee
Confidence 4444444322 23455555555567888888888888885
No 52
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=99.07 E-value=2.6e-08 Score=93.78 Aligned_cols=180 Identities=17% Similarity=0.121 Sum_probs=100.2
Q ss_pred eeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEE-eCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhc
Q 041815 175 KIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTI-EKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKT 253 (475)
Q Consensus 175 ~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~-~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~ 253 (475)
..++|.+|.|.....-.. +..-.|+|+||--+-+ +.+ .+|.+.-...+.-..-|.-.|-+.+++.|--
T Consensus 106 ~~v~EItaha~Ga~~~~p---p~v~tIIDIGGQDsK~--I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi------ 174 (293)
T TIGR03192 106 KAITEIACHARGANYMGG---NAVRTILDMGGQDCKA--IHCDEKGKVTNFLMNDKCAAGTGRGMEVISDLMQI------ 174 (293)
T ss_pred cceeeHHHHHHHHHHhcC---CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccccHHHHHHHHHcCC------
Confidence 468999998876654321 1233799999976654 444 3555555555554555544444445444421
Q ss_pred cCCCCCCHHHHHHHHHHHHHHH-HHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Q 041815 254 EKDISGSPRAVQRLRKDCERAK-RILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDN 332 (475)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~e~~K-~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~ 332 (475)
+...+..+ +.+++ ....-+....+..++-.-. -+.--.++++ ++.-+...+...+...+++.++.
T Consensus 175 ------~leel~~~---a~~~~~~p~~Iss~CtVFAeSevi~-l~~~G~~~ed---I~aGl~~sia~rv~~~~~~~~i~- 240 (293)
T TIGR03192 175 ------PIADLGPR---SFDVETEPEAVSSICVVFAKSEALG-LLKAGYTKNM---VIAAYCQAMAERVVSLLERIGVE- 240 (293)
T ss_pred ------CHHHHHHH---HHhcCCCCCCcCCcceEeccHhHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHhcccCCC-
Confidence 11111111 11111 1112223334433320000 0111234443 33334444444444444443332
Q ss_pred CCCCeEEEecCCCCcHHHHHHHHHHcCCcccc-cCCCCcchhhchHHHHHHH
Q 041815 333 SSVDDVVIVGGSARIPKVQQLLQEFFNGKRLC-KNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 333 ~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~-~~~~p~~ava~Gaa~~a~~ 383 (475)
+.|+|+||.++.+.+++.+++.+ +.++. .+.+|+.+-|+|||++|..
T Consensus 241 ---~~v~~~GGva~N~~l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 241 ---EGFFITGGIAKNPGVVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred ---CCEEEECcccccHHHHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 47999999999999999999999 66766 5778999999999999853
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=99.05 E-value=1.8e-08 Score=98.54 Aligned_cols=181 Identities=15% Similarity=0.102 Sum_probs=102.0
Q ss_pred eeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhcc
Q 041815 175 KIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTE 254 (475)
Q Consensus 175 ~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 254 (475)
.+++|-+|.+.....-.... +..-.|+|+||--.- ++++.+|.+.-...++-..-|+-.|=+.+++.|.-.
T Consensus 220 ~iv~EItaha~GA~~L~p~~-~~v~TIIDIGGQDsK--~I~l~~G~v~dF~MNdkCAAGTGrFLE~~A~~Lgi~------ 290 (404)
T TIGR03286 220 LIQEELTVNSKGAVYLADKQ-EGPATVIDIGGMDNK--AISVWDGIPDNFTMGGICAGASGRFLEMTAKRLGVD------ 290 (404)
T ss_pred ceEEEEhhHHHHHHHhcccC-CCCcEEEEeCCCceE--EEEEcCCceeeEEEcCcccccCcHHHHHHHHHhCCC------
Confidence 45888888765543332111 335689999996444 555567776666666655556666655555555111
Q ss_pred CCCCCCHHHHHHHHHHHHHHH-HHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHH-HHHHhCCCCC
Q 041815 255 KDISGSPRAVQRLRKDCERAK-RILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVD-MCLRTGKTDN 332 (475)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K-~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~-~~l~~~~~~~ 332 (475)
++.|-+.+.+.+ +...-+....+.-++-.- .-...-.++++ ++.-+...+.+.+. .+++..+..
T Consensus 291 ---------ieEl~~lA~~~~~~pv~IsS~CtVFaeSevI-sll~~G~~~eD---IaAGl~~SIa~rv~~~l~~~~~i~- 356 (404)
T TIGR03286 291 ---------ITELGKLALKGMPEKVRMNSYCIVFGIQDLV-TALAEGASPED---VAAAACHSVAEQVYEQQLQEIDVR- 356 (404)
T ss_pred ---------HHHHHHHHHhCCCCCCCccCcccccccHhHH-HHHHCCCCHHH---HHHHHHHHHHHHHHHHHhhcCCCC-
Confidence 112222222221 111111122221111000 00001133433 33444444444443 234443322
Q ss_pred CCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHH
Q 041815 333 SSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 333 ~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
+.|+++||.++.+.+.+.+++.+ +.++..+.+|+.+.|+|||++|.
T Consensus 357 ---~~VvftGGva~N~gvv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 357 ---EPVILVGGTSLIEGLVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred ---CcEEEECChhhhHHHHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 36999999999999999999999 78899999999999999999974
No 54
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=98.95 E-value=2.5e-08 Score=96.36 Aligned_cols=179 Identities=15% Similarity=0.129 Sum_probs=104.7
Q ss_pred eeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEe-CCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhc
Q 041815 175 KIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIE-KGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKT 253 (475)
Q Consensus 175 ~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~-~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~ 253 (475)
.+++|.+|.|....+-. ++.-.|+|+||-.+-+ +++. +|.+.-...+.-..-|.-.|-+.+++.|--
T Consensus 249 ~vitEItcHA~GA~~l~----P~vrTIIDIGGQDsK~--I~ld~~G~V~dF~MNDKCAAGTGrFLE~mA~~Lgi------ 316 (432)
T TIGR02259 249 HIRSEILCHGLGAHLMY----PGTRTVLDIGGQDTKG--IQIDDHGIVENFQMNDRCAAGCGRYLGYIADEMNM------ 316 (432)
T ss_pred ceeeeHHHHHHHHHHHC----CCCCEEEEeCCCceEE--EEEcCCCcEeeeeecCcccccchHHHHHHHHHcCC------
Confidence 46799999888765543 3344799999987664 5554 465555555555555655555555444411
Q ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q 041815 254 EKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNS 333 (475)
Q Consensus 254 ~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~ 333 (475)
+. +.|-..+.+++....-+....+..++-.-. .+.--.++++ ++.-+...+...+...+.+.. .
T Consensus 317 ------~l---eEl~~lA~~a~~pv~ISS~CtVFAESEVIs-lla~G~~reD---IaAGL~~SIA~Rv~s~l~r~~---~ 380 (432)
T TIGR02259 317 ------GL---HELGPLAMKSSKPARINSTCTVFAGAELRD-RLALGDKRED---ILAGLHRAIILRAISIISRSG---G 380 (432)
T ss_pred ------CH---HHHHHHHhcCCCCCCcCCcceEEehHHHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccc---C
Confidence 11 122222333333333334444444320000 0111234433 344444444444444444431 1
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcC----CcccccCCCCcchhhchHHHHH
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFN----GKRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~----~~~v~~~~~p~~ava~Gaa~~a 381 (475)
.-+.|+|+||.++.+++.+.|++.++ +.++..+.+|+.+-|+|||++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 12489999999999999999999994 4678889999999999999975
No 55
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=98.94 E-value=1.1e-07 Score=88.38 Aligned_cols=178 Identities=12% Similarity=0.055 Sum_probs=98.1
Q ss_pred eeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEE-eCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhcc
Q 041815 176 IISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTI-EKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTE 254 (475)
Q Consensus 176 ~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~-~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 254 (475)
.++|.+|.|.....-. ++.=.|+|+||--+-+ +++ .+|.+.-...+.-..-|.-.|-+.+++.|--.
T Consensus 80 ~vtEIt~ha~GA~~~~----p~~~tIiDIGGQD~K~--I~~~~~G~v~~f~MNdkCAAGTG~FLe~~A~~L~i~------ 147 (262)
T TIGR02261 80 HFYSMTTHARGAIYLN----PEARAVLDIGALHGRA--IRMDERGKVEAYKMTSQCASGSGQFLENIARYLGIA------ 147 (262)
T ss_pred CeeEEeHHHHHHHHHC----CCCCEEEEeCCCceEE--EEEcCCCcEeeEEecCcccccccHHHHHHHHHhCCC------
Confidence 3578888777655432 2334799999987664 554 35566555555544555455544444444111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q 041815 255 KDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSS 334 (475)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~ 334 (475)
++.|-+.+.+++....-+....+..++-.-. .+.--.+|++ ++.-+.+.+...+...+++.+..
T Consensus 148 ---------leel~~~a~~~~~~~~iss~CtVFaeSevi~-~~~~G~~~ed---I~aGl~~sia~r~~~~~~~~~~~--- 211 (262)
T TIGR02261 148 ---------QDEIGSLSQQADNPEKVSGICAVLAETDVIN-MVSRGISAPN---ILKGIHESMADRLAKLLKSLGAL--- 211 (262)
T ss_pred ---------HHHHHHHHhcCCCCCCcCCCceEEchhhHHH-HHHCCCCHHH---HHHHHHHHHHHHHHHHHhccCCC---
Confidence 1122222333333222333344443320000 0111234443 33444444444444444443211
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHcCCcc----cccCCCCcchhhchHHHHH
Q 041815 335 VDDVVIVGGSARIPKVQQLLQEFFNGKR----LCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 335 i~~VvLvGG~s~~p~v~~~l~~~~~~~~----v~~~~~p~~ava~Gaa~~a 381 (475)
-+.|+|+||.++.+++.+.+++.+++.+ +..+.+|+.+-|+|||++|
T Consensus 212 ~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 212 DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 1369999999999999999999884322 5567789999999999975
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=98.94 E-value=1.1e-07 Score=90.73 Aligned_cols=192 Identities=18% Similarity=0.167 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhH
Q 041815 157 SQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGED 236 (475)
Q Consensus 157 ~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~ 236 (475)
.-|..+..+. ..-..++|-.|-+.+...-... -+ .|+|+||--.- ++.+.+|.+.-...+.-..-|.-.
T Consensus 198 YGR~~v~~~~-----~aD~~~~Ei~ah~kgA~~f~p~--~d--tIiDIGGQD~K--~i~i~dG~v~df~mN~~CAAGtGr 266 (396)
T COG1924 198 YGRNLVGAAL-----GADKVVVEISAHAKGARYFAPD--VD--TVIDIGGQDSK--VIKLEDGKVDDFTMNDKCAAGTGR 266 (396)
T ss_pred ccHHHhhhhh-----cCCcceeeeehhHHHHHHhCCC--Cc--EEEEecCccee--EEEEeCCeeeeeEeccccccccch
Confidence 3455554332 3335677777766654433222 12 89999996544 555557777666666545555455
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHH
Q 041815 237 FDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRK 316 (475)
Q Consensus 237 id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~ 316 (475)
|-+.+++.|--. ++.+-+.+++++..-.-+....+..++-.-. .+.--. ..|+++.-+...
T Consensus 267 FLE~~A~~Lgv~---------------v~E~~~~A~~~~~~v~i~S~CaVF~eSevi~-~~~~G~---~~EdI~AGl~~S 327 (396)
T COG1924 267 FLEVIARRLGVD---------------VEELGKLALKATPPVKINSRCAVFAESEVIS-ALAEGA---SPEDILAGLAYS 327 (396)
T ss_pred HHHHHHHHhCCC---------------HHHHHHHHhcCCCCcccCCeeEEEehHHHHH-HHHcCC---CHHHHHHHHHHH
Confidence 544554444211 1222223333333222233333333220000 000011 235555566665
Q ss_pred HHHHHHH-HHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHH
Q 041815 317 CIKHVDM-CLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 317 i~~~i~~-~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
+.+.+.. +++...... -|+|+||.+....+.+++++.+ +.++..|.+|+..-|.|||+++..
T Consensus 328 v~~~v~~~~~~~~~i~~----~iv~~GGva~n~av~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 328 VAENVAEKVIKRVDIEE----PIVLQGGVALNKAVVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHhhccCCCC----CEEEECcchhhHHHHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 5554444 555533332 3999999999999999999999 789999999999999999999854
No 57
>KOG0676 consensus Actin and related proteins [Cytoskeleton]
Probab=98.92 E-value=2.3e-08 Score=97.20 Aligned_cols=222 Identities=15% Similarity=0.188 Sum_probs=116.8
Q ss_pred CeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEE
Q 041815 144 SNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFK 222 (475)
Q Consensus 144 ~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~ 222 (475)
..+++|-|+.|..+.|+.+.+. .+..+.+.+.+ .-.|.. |... ..+-+|+|+|.|-+++.-+- +|..
T Consensus 100 ~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv--a~qavl--ya~g-----~ttG~VvD~G~gvt~~vPI~--eG~~- 167 (372)
T KOG0676|consen 100 HPVLLTEPPLNPKANREKLTQIMFETFNVPALYV--AIQAVL--YASG-----RTTGLVVDSGDGVTHVVPIY--EGYA- 167 (372)
T ss_pred CceEeecCCCCchHhHHHHHHHhhhhcCccHhHH--HHHHHH--HHcC-----CeeEEEEEcCCCceeeeecc--cccc-
Confidence 4689999999999999998766 45555555555 223333 3322 45679999999977643332 2221
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHH----HHHHHHHhcC-CceeEEEEec-cccCcc
Q 041815 223 VKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKD----CERAKRILSS-TSQTTIEIDS-LYEGID 296 (475)
Q Consensus 223 v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----~e~~K~~ls~-~~~~~~~i~~-~~~~~~ 296 (475)
+...-....+||.++++.+...|.+ +.+.............+++. +-.-++++.. +....+.... +.++..
T Consensus 168 lp~ai~~ldl~G~dlt~~l~~~L~~---~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~ 244 (372)
T KOG0676|consen 168 LPHAILRLDLAGRDLTDYLLKQLRK---RGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQK 244 (372)
T ss_pred cchhhheecccchhhHHHHHHHHHh---cccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCE
Confidence 2222344789999999977777766 11111111111112222211 1111122221 1111111110 112221
Q ss_pred ceEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHh--CCCCCCCCCeEEEecCCCCcHHHHHHHHHHcC-------
Q 041815 297 FSSVMTRARF---EELNMDLF-----RKCIKHVDMCLRT--GKTDNSSVDDVVIVGGSARIPKVQQLLQEFFN------- 359 (475)
Q Consensus 297 ~~~~itr~~~---~~~~~~~~-----~~i~~~i~~~l~~--~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~------- 359 (475)
+.+.-+.| |-+++|.+ ..|.+.+-+.+-+ .++......+|+|+||++..|++.+++.+...
T Consensus 245 --i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~pGl~~Rl~kEl~~l~P~~~ 322 (372)
T KOG0676|consen 245 --ITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFPGLADRLQKELQALAPSTI 322 (372)
T ss_pred --EecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccchhHHHHHHHHHhhcCCCCc
Confidence 33433333 12233222 2233333333333 33444457899999999999999999988662
Q ss_pred CcccccCCCCcchhhchHHHHHH
Q 041815 360 GKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 360 ~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
..++..+.+...++.+|+.+.|.
T Consensus 323 ~ikv~~pp~r~~s~WlGgSIlas 345 (372)
T KOG0676|consen 323 KIKVIAPPERKYSAWLGGSILAS 345 (372)
T ss_pred ceEEecCcccccceecCceeEee
Confidence 11344444444677888887764
No 58
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=98.86 E-value=3.5e-10 Score=68.53 Aligned_cols=29 Identities=41% Similarity=1.135 Sum_probs=14.4
Q ss_pred ccccccCCCCCC-ceeecccCCCCCCcCCC
Q 041815 444 SKCNGCKRPAFG-LMYRCELCNFNLHIPCM 472 (475)
Q Consensus 444 ~~c~~c~~~~~~-~~~~~~~~~~~~~~~~~ 472 (475)
+.|++|++++.+ |.|.|.+|||+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~Cdf~lH~~Ca 30 (30)
T PF07649_consen 1 FRCDACGKPIDGGWFYRCSECDFDLHEECA 30 (30)
T ss_dssp ---TTTS----S--EEE-TTT-----HHHH
T ss_pred CcCCcCCCcCCCCceEECccCCCccChhcC
Confidence 579999999998 99999999999999997
No 59
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=98.69 E-value=2.6e-06 Score=91.36 Aligned_cols=366 Identities=17% Similarity=0.261 Sum_probs=201.7
Q ss_pred EEEecCCccEEEEEEECCc---------EEEEecCC------CCcccceEEEEcC---------------------CcEE
Q 041815 10 IGIDLGTTYSCVGVWQHDR---------VEIIANDQ------GNRTTPSYVAFTD---------------------KECF 53 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~g~---------~~vi~~~~------g~~~~Ps~v~~~~---------------------~~~~ 53 (475)
+-+|+|++.||--+.++.. .++..-+- .+.-+.|.|.|.. .-.-
T Consensus 252 LVLDVGNSrTCGILIEdh~~e~~~L~~~y~L~lRDLs~P~~~Y~epFeSRvEFa~a~FGk~~~S~~SGR~~AF~WPSivR 331 (1002)
T PF07520_consen 252 LVLDVGNSRTCGILIEDHPQENDGLKQSYELQLRDLSQPEYVYNEPFESRVEFAQARFGKDHFSVRSGRSDAFVWPSIVR 331 (1002)
T ss_pred EEEecCCcceeeEEEecCCccccChhhcceeeecccCCchhhccCcchhHHHhhhhccCccccchhcCCCCcccCCCcce
Confidence 6789999999988875321 11111011 1233455554420 1235
Q ss_pred ecHHHHHhhh----hCCCceecccHHhhCC--------CCCChhhhhc----ccccCeEEEecCCCCceEEE-ee----C
Q 041815 54 VGDAAKNQVA----MNPTNTVFDAKRLIGR--------RFGDVSVQSD----VKLWPFEVVAGPKDKPMIVV-NC----K 112 (475)
Q Consensus 54 ~G~~A~~~~~----~~~~~~~~~~k~~lg~--------~~~~~~v~~~----~~~~~~~~~~~~~~~~~~~v-~~----~ 112 (475)
+|.+|.+.+. +.....+.+.||+|=. +|+....... ....|+.-..+++|.+...+ .. .
T Consensus 332 VG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~p 411 (1002)
T PF07520_consen 332 VGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERLP 411 (1002)
T ss_pred ecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccCc
Confidence 8888876653 2344557788998821 1221111100 11222322334556555544 11 1
Q ss_pred CceeeeeHHHHHHHHHHHHHHHHHhhcCC--------------CCCeEEEEeCCCCCHHHHHHHHHHHHHc--------C
Q 041815 113 GEEKRYAAEEISSMVLAKMRDIAEDYVGS--------------PVSNAVVTVPAYFTDSQRQATKDAGAMA--------G 170 (475)
Q Consensus 113 g~~~~~~~~~l~~~~L~~l~~~a~~~~~~--------------~~~~~vitVP~~~~~~~r~~l~~a~~~a--------g 170 (475)
.-...|+-..+...+|..+...|--+.+. ....+++|+|+.....+|+.+++.++.| |
T Consensus 412 vf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~lG 491 (1002)
T PF07520_consen 412 VFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKALG 491 (1002)
T ss_pred cccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 12234677778888888887777655542 3567999999999999999998888765 3
Q ss_pred Cc--------------------eee-eeechHHHHHHhhhcc------------------CC---------CCCceEEEE
Q 041815 171 LN--------------------VLK-IISEPTAAAIAYGLDR------------------KA---------TSEKNVLIF 202 (475)
Q Consensus 171 l~--------------------~~~-~i~Ep~Aaa~~~~~~~------------------~~---------~~~~~vlvv 202 (475)
.. .+. =-+|.+|.-+-|+++. .. .+.-.+.-|
T Consensus 492 w~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriASI 571 (1002)
T PF07520_consen 492 WHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIASI 571 (1002)
T ss_pred CCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEEE
Confidence 21 111 1256666544443211 00 023468999
Q ss_pred EeCCCceEEEEEEEe----CCe-EEEE---EEcCCCCCchhHHHHHHHHHH-HHHHHhh----------------ccCCC
Q 041815 203 DLGGGTFDVSLLTIE----KGI-FKVK---ATAGDTHLGGEDFDNRMVNHF-IQEFKRK----------------TEKDI 257 (475)
Q Consensus 203 D~Gggt~dvsv~~~~----~~~-~~v~---~~~~~~~~GG~~id~~l~~~l-~~~~~~~----------------~~~~~ 257 (475)
||||||||+.|-+.. .|. ..+. --..+..+.|++|-..+++.+ ...+.+. +|.+-
T Consensus 572 DIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~dg 651 (1002)
T PF07520_consen 572 DIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGDG 651 (1002)
T ss_pred ecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCcc
Confidence 999999999988876 221 1111 112335789999877666544 2222211 11110
Q ss_pred CCCH-HHH-------------HHHHHHHHHHHHHhcCCceeEEEEecc---------------------------ccCcc
Q 041815 258 SGSP-RAV-------------QRLRKDCERAKRILSSTSQTTIEIDSL---------------------------YEGID 296 (475)
Q Consensus 258 ~~~~-~~~-------------~~l~~~~e~~K~~ls~~~~~~~~i~~~---------------------------~~~~~ 296 (475)
.... +.+ .+++.++|..-. +.........+..+ .+=.+
T Consensus 652 ~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~-~~~~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdild 730 (1002)
T PF07520_consen 652 QSDQDRVLRQQFTLQVFIPIGLAILKAYENYDP-LDPSAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDILD 730 (1002)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-cccCccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCcceec
Confidence 0000 000 011122222100 00000111111000 00123
Q ss_pred ceEEEcHHHHHHHHH---HHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcc-----------
Q 041815 297 FSSVMTRARFEELNM---DLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKR----------- 362 (475)
Q Consensus 297 ~~~~itr~~~~~~~~---~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~----------- 362 (475)
+.+.|+.+++...+- ..+...+..+-+++... +.|-++|+|=-||+|+|+..+++..+ .+
T Consensus 731 v~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y-----~CDVLLLTGRPSrlPgvqalfr~~~p-vPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 731 VPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHY-----DCDVLLLTGRPSRLPGVQALFRHLLP-VPPDRIVPLHGYR 804 (1002)
T ss_pred ceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHh-----CCCEEEEcCCccccHHHHHHHHHhCC-CCcccEEecCCee
Confidence 567899999988774 56666667777777663 35799999999999999999999873 11
Q ss_pred ---------cccCCCCcchhhchHHHHHH
Q 041815 363 ---------LCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 363 ---------v~~~~~p~~ava~Gaa~~a~ 382 (475)
-..-.||...||+||.+-.-
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~L 833 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLL 833 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHH
Confidence 12334999999999987543
No 60
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=98.67 E-value=3.3e-07 Score=83.79 Aligned_cols=192 Identities=18% Similarity=0.184 Sum_probs=111.0
Q ss_pred HHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHH
Q 041815 164 DAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVN 243 (475)
Q Consensus 164 ~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~ 243 (475)
+.-+..|.++..-=.|+++|.+..+..... +..++++|+|||+||.+++...+. +.-+.. .-.|+.++..|..
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTPGt--~~PlaIlDmG~GSTDAsii~~~g~-v~~iHl----AGAG~mVTmlI~s 175 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTPGT--DKPLAILDMGGGSTDASIINRDGE-VTAIHL----AGAGNMVTMLINS 175 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TTS--EEEEEE----E-SHHHHHHHHHH
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCCCC--CCCeEEEecCCCcccHHHhCCCCc-EEEEEe----cCCchhhHHHHHH
Confidence 334556888877789999999999888766 778999999999999999986552 222222 2246777666544
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCC----------ceeEEEEec------------cccC--ccceE
Q 041815 244 HFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSST----------SQTTIEIDS------------LYEG--IDFSS 299 (475)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~----------~~~~~~i~~------------~~~~--~~~~~ 299 (475)
.|-- +. +.-+|..|+---.. +.+...++. +.++ .++..
T Consensus 176 ELGl------------~d------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lvPi~~ 237 (332)
T PF08841_consen 176 ELGL------------ED------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLVPIPG 237 (332)
T ss_dssp HCT-------------S-------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEEEESS
T ss_pred hhCC------------CC------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCC
Confidence 3311 00 12567777631100 000000000 0011 11222
Q ss_pred EEcHHHHHHHHHHHHHHH-HHHHHHHHHhCC--CCCCCCCeEEEecCCCCcHHHHHHHHHHcCC-------cccccCCCC
Q 041815 300 VMTRARFEELNMDLFRKC-IKHVDMCLRTGK--TDNSSVDDVVIVGGSARIPKVQQLLQEFFNG-------KRLCKNINP 369 (475)
Q Consensus 300 ~itr~~~~~~~~~~~~~i-~~~i~~~l~~~~--~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~-------~~v~~~~~p 369 (475)
.++-+++..+=+..-+++ ..-..++|++.. -...+|+.|+|+||++.=.-|.+.+.+.+.. -.++-..-|
T Consensus 238 ~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG~eGP 317 (332)
T PF08841_consen 238 DLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRGVEGP 317 (332)
T ss_dssp TS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGGTSTT
T ss_pred CccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeeccccccccCc
Confidence 345555555544444443 344556666532 2356799999999999988888888887732 256777799
Q ss_pred cchhhchHHHH
Q 041815 370 DEAVAYGAAVQ 380 (475)
Q Consensus 370 ~~ava~Gaa~~ 380 (475)
..|||.|.++.
T Consensus 318 RNAVATGLvls 328 (332)
T PF08841_consen 318 RNAVATGLVLS 328 (332)
T ss_dssp STHHHHHHHHH
T ss_pred hHHHHHHHHHh
Confidence 99999999885
No 61
>PRK13317 pantothenate kinase; Provisional
Probab=98.63 E-value=9e-06 Score=77.28 Aligned_cols=48 Identities=19% Similarity=0.254 Sum_probs=42.9
Q ss_pred CCeEEEec-CCCCcHHHHHHHHHHcC--CcccccCCCCcchhhchHHHHHH
Q 041815 335 VDDVVIVG-GSARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 335 i~~VvLvG-G~s~~p~v~~~l~~~~~--~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
++.|+++| |.++.|.+++.+.+.+. +.++..+.+|+.+.|+|||+++.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 56999999 79999999999999874 56788899999999999999875
No 62
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=98.47 E-value=9.3e-08 Score=57.71 Aligned_cols=29 Identities=38% Similarity=0.974 Sum_probs=27.8
Q ss_pred ccccccCCCCCCc-eeecccCCCCCCcCCC
Q 041815 444 SKCNGCKRPAFGL-MYRCELCNFNLHIPCM 472 (475)
Q Consensus 444 ~~c~~c~~~~~~~-~~~~~~~~~~~~~~~~ 472 (475)
|.|++|++..+|. .|+|++|+|+||..||
T Consensus 1 ~~C~~C~~~~~~~~~Y~C~~c~f~lh~~Ca 30 (30)
T PF03107_consen 1 FWCDVCRRKIDGFYFYHCSECCFTLHVRCA 30 (30)
T ss_pred CCCCCCCCCcCCCEeEEeCCCCCeEcCccC
Confidence 6899999999999 9999999999999997
No 63
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=98.41 E-value=2e-06 Score=85.44 Aligned_cols=205 Identities=19% Similarity=0.209 Sum_probs=110.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeee---eechHHHHHHhhhccCCC-CCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 146 AVVTVPAYFTDSQRQATKDAGAMAGLNVLKI---ISEPTAAAIAYGLDRKAT-SEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 146 ~vitVP~~~~~~~r~~l~~a~~~agl~~~~~---i~Ep~Aaa~~~~~~~~~~-~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
+.||==+--.+..|+.+...+..||==++.- -.|+.-|+...+...... ....++=+|+||||+.+++++.++
T Consensus 88 VIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~G~--- 164 (473)
T PF06277_consen 88 VIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDNGE--- 164 (473)
T ss_pred EEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEECCE---
Confidence 4556555556677777777777777322211 135554544433322221 367788899999999999999765
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEE
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVM 301 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i 301 (475)
+...++.++||+.|--. . .+.-...++. .+++. +.+... +..| -.+
T Consensus 165 --v~~T~cl~IGGRLi~~d----------~-~g~i~yis~~-~~~l~-------~~~~~~---------~~~G----~~~ 210 (473)
T PF06277_consen 165 --VIDTACLDIGGRLIEFD----------P-DGRITYISPP-IQRLL-------EELGLE---------LSVG----DRA 210 (473)
T ss_pred --EEEEEEEeeccEEEEEc----------C-CCcEEEECHH-HHHHH-------HHhCCC---------CCcc----ccC
Confidence 33344578999865211 0 0000001111 11111 111111 0111 135
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHH--------HHh-CCCC-CCCCCeEEEecCCCCc----------------HHHHHHHH
Q 041815 302 TRARFEELNMDLFRKCIKHVDMC--------LRT-GKTD-NSSVDDVVIVGGSARI----------------PKVQQLLQ 355 (475)
Q Consensus 302 tr~~~~~~~~~~~~~i~~~i~~~--------l~~-~~~~-~~~i~~VvLvGG~s~~----------------p~v~~~l~ 355 (475)
+.++++.+++...+-+.+.+... |-. -.+. ...++.|.++||-+.. |.+-++|+
T Consensus 211 ~~~~l~~i~~~Ma~~l~~~i~~~~~~~~~~~L~~~~~l~~~~~~~~v~fSGGVad~iy~~~~~d~~~yGDIG~lLg~ai~ 290 (473)
T PF06277_consen 211 DPEQLRKICRRMAELLVEVIGGKPLSPLAEELLTTPPLPDDYPIDAVTFSGGVADCIYRPEEADPFRYGDIGPLLGQAIR 290 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCCCChhhhhhccCCCCCcCCCCCEEEEechHHHHhhCCCCCCccccCcHHHHHHHHHH
Confidence 66777776666655555444322 111 1122 3468999999997753 33444444
Q ss_pred HHc--CCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 356 EFF--NGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 356 ~~~--~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
+.. ...++..+...--|.++||--+...+||+
T Consensus 291 ~~~~~~~~~~~~p~ETiRATViGAG~~Tt~iSGS 324 (473)
T PF06277_consen 291 ESPLLASFKVLQPAETIRATVIGAGSHTTEISGS 324 (473)
T ss_pred hChhhhcCceecCCCcceEEEEcccceEEEEeee
Confidence 432 23345555455557788888888878875
No 64
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=98.29 E-value=7.1e-06 Score=74.13 Aligned_cols=228 Identities=16% Similarity=0.227 Sum_probs=133.8
Q ss_pred CCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCe
Q 041815 142 PVSNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGI 220 (475)
Q Consensus 142 ~~~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~ 220 (475)
....+.+|-|+--....|+.|.+. .+..|+.-+.+.-...-+.++-++. +-+|+|-|.|-|.+.-+. .+.
T Consensus 100 ~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~-------tGvVvDSGDGVTHi~PVy--e~~ 170 (389)
T KOG0677|consen 100 TNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLL-------TGVVVDSGDGVTHIVPVY--EGF 170 (389)
T ss_pred ccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhccc-------ceEEEecCCCeeEEeeee--cce
Confidence 334688999999888889988665 6788998887766655555554433 457999999998875443 221
Q ss_pred EEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHH------HHHHHhcCCceeEEEEec--cc
Q 041815 221 FKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCE------RAKRILSSTSQTTIEIDS--LY 292 (475)
Q Consensus 221 ~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e------~~K~~ls~~~~~~~~i~~--~~ 292 (475)
. .-.-.+...+.|+++++-|.++|..+ .+..+-..+-...+.+++..- +....|.. ++++-++. +.
T Consensus 171 ~-l~HLtrRldvAGRdiTryLi~LLl~r---GYafN~tADFETVR~iKEKLCYisYd~e~e~kLal--ETTvLv~~YtLP 244 (389)
T KOG0677|consen 171 V-LPHLTRRLDVAGRDITRYLIKLLLRR---GYAFNHTADFETVREIKEKLCYISYDLELEQKLAL--ETTVLVESYTLP 244 (389)
T ss_pred e-hhhhhhhccccchhHHHHHHHHHHhh---ccccccccchHHHHHHHhhheeEeechhhhhHhhh--hheeeeeeeecC
Confidence 1 11112346789999999999988653 222222223233322222110 00111222 22222222 22
Q ss_pred cCccceEEEcHHHHH---HHHHHHH-----HHHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHHHHHHHHcC---
Q 041815 293 EGIDFSSVMTRARFE---ELNMDLF-----RKCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQQLLQEFFN--- 359 (475)
Q Consensus 293 ~~~~~~~~itr~~~~---~~~~~~~-----~~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~~~--- 359 (475)
+| ..+++--+.|+ .++.|.+ ..+.+++-+.++.+.++ ..--.+|+|+||++.-|++..+|++.+.
T Consensus 245 DG--RvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPSRLEkElkqly 322 (389)
T KOG0677|consen 245 DG--RVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPSRLEKELKQLY 322 (389)
T ss_pred CC--cEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcHHHHHHHHHHH
Confidence 33 23444445553 3555532 23556666666665543 2235689999999999999888877541
Q ss_pred ---------------CcccccCCCCcchhhchHHHHHHHHcC
Q 041815 360 ---------------GKRLCKNINPDEAVAYGAAVQAAVLSG 386 (475)
Q Consensus 360 ---------------~~~v~~~~~p~~ava~Gaa~~a~~~~~ 386 (475)
...+..+..-..-|-+|.|.+|.++..
T Consensus 323 l~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 323 LDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 112333334456788899999888865
No 65
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton]
Probab=98.22 E-value=0.00015 Score=67.87 Aligned_cols=102 Identities=16% Similarity=0.123 Sum_probs=60.2
Q ss_pred CCCeEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeeechHHHHHH-hhhccCCC---CCceEEEEEeCCCceEEEEEEE
Q 041815 142 PVSNAVVTVPAYFTDS-QRQATKDAGAMAGLNVLKIISEPTAAAIA-YGLDRKAT---SEKNVLIFDLGGGTFDVSLLTI 216 (475)
Q Consensus 142 ~~~~~vitVP~~~~~~-~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~-~~~~~~~~---~~~~vlvvD~Gggt~dvsv~~~ 216 (475)
....+++|-|.+--++ +.....-..+..++..+.-.+-.+-+|.. |..+.+.. .....+|+|.|-+-|.+.-+-.
T Consensus 92 ~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v~ 171 (400)
T KOG0680|consen 92 KDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVVK 171 (400)
T ss_pred CcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhhc
Confidence 3457899999654444 33444555677777654433322222222 22222221 3568999999999887655543
Q ss_pred eCCeEEEEEEcCCCCCchhHHHHHHHHHHH
Q 041815 217 EKGIFKVKATAGDTHLGGEDFDNRMVNHFI 246 (475)
Q Consensus 217 ~~~~~~v~~~~~~~~~GG~~id~~l~~~l~ 246 (475)
+. ....+..+ ..+||..+++.|.+++.
T Consensus 172 g~--~~~qaV~R-iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 172 GI--PYYQAVKR-IDVGGKALTNLLKETIS 198 (400)
T ss_pred Cc--chhhceEE-eecchHHHHHHHHHHhh
Confidence 32 22122223 68999999999999884
No 66
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=97.94 E-value=0.0018 Score=61.36 Aligned_cols=47 Identities=19% Similarity=0.167 Sum_probs=40.1
Q ss_pred CCCCeEEEecC-CCCcHHHHHHHHHHcC--CcccccCCCCcchhhchHHH
Q 041815 333 SSVDDVVIVGG-SARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 333 ~~i~~VvLvGG-~s~~p~v~~~l~~~~~--~~~v~~~~~p~~ava~Gaa~ 379 (475)
..++.|+++|| .+..|.+++.+...+. +.++..+.|+...+|+||++
T Consensus 229 ~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 229 YNIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred cCCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 34789999999 6789999999988763 46788888999999999986
No 67
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=97.84 E-value=0.0058 Score=63.82 Aligned_cols=51 Identities=35% Similarity=0.397 Sum_probs=38.6
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSG 386 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~ 386 (475)
.++.|.++||+++++...+++.+.+ +.++..+.. .|+.+.|+|..++...+
T Consensus 401 ~~~~i~~~GGgars~~w~Qi~Ad~~-g~~v~~~~~-~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 401 PPSRVRVVGGGARSPLWLQILADAL-GLPVVVPEV-EEAGALGGAALAAAALG 451 (502)
T ss_pred CccEEEEECCcccCHHHHHHHHHHc-CCeeEecCc-ccchHHHHHHHHHHHhC
Confidence 4679999999999999999999999 888886644 45555555555544443
No 68
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=97.84 E-value=0.0096 Score=56.89 Aligned_cols=72 Identities=18% Similarity=0.275 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHc----CCcccccCCCCcchhhchHHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFF----NGKRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~----~~~~v~~~~~p~~ava~Gaa~~a 381 (475)
.++++...+.+.+.+...+++...... .|+|+||....+.+++.+.+.+ +..++..+..|....+.||+++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~~---~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEKE---PVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCCC---SEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---eEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 456666667777777777777544321 2999999999987777774444 34455667789999999999986
No 69
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=97.83 E-value=9.5e-06 Score=53.35 Aligned_cols=30 Identities=33% Similarity=1.013 Sum_probs=27.7
Q ss_pred cccccCCCCCCceeecccC-CCCCCcCCCCC
Q 041815 445 KCNGCKRPAFGLMYRCELC-NFNLHIPCMFI 474 (475)
Q Consensus 445 ~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~~ 474 (475)
.||+|++|..|.+|+|..| ||||+..|...
T Consensus 2 ~Cd~C~~~i~G~ry~C~~C~d~dLC~~C~~~ 32 (43)
T cd02340 2 ICDGCQGPIVGVRYKCLVCPDYDLCESCEAK 32 (43)
T ss_pred CCCCCCCcCcCCeEECCCCCCccchHHhhCc
Confidence 6999999999999999999 89999999653
No 70
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=97.74 E-value=0.00027 Score=70.03 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=88.5
Q ss_pred eeeHHHHHHHHHHHHHHHHHhhcCCCC-----CeEEEEeCCCCCHHHHHHH-HHHHHHcCCceeeeeechHHHHHHhhhc
Q 041815 117 RYAAEEISSMVLAKMRDIAEDYVGSPV-----SNAVVTVPAYFTDSQRQAT-KDAGAMAGLNVLKIISEPTAAAIAYGLD 190 (475)
Q Consensus 117 ~~~~~~l~~~~L~~l~~~a~~~~~~~~-----~~~vitVP~~~~~~~r~~l-~~a~~~agl~~~~~i~Ep~Aaa~~~~~~ 190 (475)
.++.+++.+++-+-+.....+.+.-+. ..+|+.||-.|...+.+.+ .-.....||..+.++-|+.|+.+..++.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 357777777766555555555555433 3579999999998876655 4557788999999999999999988865
Q ss_pred cCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHH
Q 041815 191 RKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQ 247 (475)
Q Consensus 191 ~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~ 247 (475)
...|||+|+-+|.++.++-+ ... ..+.-....||+||++.|+-++++
T Consensus 276 -------s~CVVdiGAQkTsIaCVEdG--vs~-~ntri~L~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 -------SACVVDIGAQKTSIACVEDG--VSL-PNTRIILPYGGDDITRCFLWLLRR 322 (618)
T ss_pred -------ceeEEEccCcceeEEEeecC--ccc-cCceEEeccCCchHHHHHHHHHHh
Confidence 56899999999999888744 221 112223578999999999877654
No 71
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=97.72 E-value=0.016 Score=59.58 Aligned_cols=81 Identities=16% Similarity=0.231 Sum_probs=53.1
Q ss_pred ceEEEcHHHHHHHHHHH---HHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCc------------
Q 041815 297 FSSVMTRARFEELNMDL---FRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGK------------ 361 (475)
Q Consensus 297 ~~~~itr~~~~~~~~~~---~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~------------ 361 (475)
+.+.|.-.++++.+-.. +......+.+++.- -+-|-++|+|--||+|+++..++...+ .
T Consensus 743 ~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~-----y~cDVlLlTGRPsrlPgvqalfr~~~p-vp~~rilpl~~Yr 816 (1014)
T COG4457 743 VPLAIDLSQLHECFLSGDYDITGVFDALCEAINH-----YDCDVLLLTGRPSRLPGVQALFRHLQP-VPVNRILPLDDYR 816 (1014)
T ss_pred cceeccHHHHHHHHhhCcccccchHHHHHHHHhh-----hcccEEEEcCCcccCccHHHHHhhcCC-CCCCceEecccee
Confidence 34566666666654333 33333444444433 345789999999999999999988763 1
Q ss_pred --------ccccCCCCcchhhchHHHHHHH
Q 041815 362 --------RLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 362 --------~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
+-....||...+|+||.+-+-.
T Consensus 817 vg~WYPF~k~grIddPKtTAaVGAMLC~Ls 846 (1014)
T COG4457 817 VGTWYPFRKQGRIDDPKTTAAVGAMLCALS 846 (1014)
T ss_pred ccceecccccCcCCCcchHHHHHHHHHHHH
Confidence 1123349999999999886544
No 72
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=97.49 E-value=0.00057 Score=64.31 Aligned_cols=220 Identities=22% Similarity=0.222 Sum_probs=112.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCceeee---eechHHHHHHhhhccCC-CCCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 146 AVVTVPAYFTDSQRQATKDAGAMAGLNVLKI---ISEPTAAAIAYGLDRKA-TSEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 146 ~vitVP~~~~~~~r~~l~~a~~~agl~~~~~---i~Ep~Aaa~~~~~~~~~-~~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
+.||=-..-....|..+......||==++.- -.|+.-|.-..+...-. +....++=+|+||||+.+|++..++
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~Gk--- 166 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDAGK--- 166 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecccc---
Confidence 4555444445556666655555555211111 12333333222221111 1256788899999999999998765
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccceEEE
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDFSSVM 301 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~i 301 (475)
+.-..+..+||+-+-..- ..+.-...++ ..+.|.+++ . .....-..+
T Consensus 167 --v~dTaCLdiGGRLik~dr----------st~~v~Yi~~-k~q~lI~~~-------g-------------~~it~g~k~ 213 (473)
T COG4819 167 --VSDTACLDIGGRLIKTDR----------STGRVVYIHK-KGQMLIDEC-------G-------------GAITDGRKL 213 (473)
T ss_pred --cccceeeecCcEEEEeec----------ccceEEEEcc-chHHHHHHc-------C-------------CCcchhhcc
Confidence 433445778887652110 0000000000 011111111 0 011122356
Q ss_pred cHHHHHHHHHHHHHHHHHHHH--------HHHHhCCCC--CCCCCeEEEecCCCCc----------------HHHHHHHH
Q 041815 302 TRARFEELNMDLFRKCIKHVD--------MCLRTGKTD--NSSVDDVVIVGGSARI----------------PKVQQLLQ 355 (475)
Q Consensus 302 tr~~~~~~~~~~~~~i~~~i~--------~~l~~~~~~--~~~i~~VvLvGG~s~~----------------p~v~~~l~ 355 (475)
+.+++..++++..+-+.+.+. +.|-..+.- ...+..|-+.||-+-. |.+-..|.
T Consensus 214 ~~~~l~~v~~emaell~~~v~~ga~s~~ye~lit~k~l~~~~~~E~isfSGGVadci~~~~~~DpF~ygDIG~lLgk~i~ 293 (473)
T COG4819 214 TGAQLVQVTREMAELLVEVVDFGALSPLYEALITTKLLPADVTPEIISFSGGVADCIRHQPNADPFCYGDIGPLLGKAIH 293 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHhcCCcCCCCceeEEEecCcHHhhhccCCCCCCcccccchhHhhHHhh
Confidence 777777777776665555543 444333322 2336778889987543 45566666
Q ss_pred HHcC--CcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEec-ccCCCCc
Q 041815 356 EFFN--GKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDV-NPNYNSP 407 (475)
Q Consensus 356 ~~~~--~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~-~p~~~~~ 407 (475)
+.+. +.+...+...--|.+.||--+-..+|| ..+.+.|+ .|+.|-|
T Consensus 294 e~~~l~e~ky~~~~eTirATVvGAG~hT~eiSG------STItytdvilPlkNiP 342 (473)
T COG4819 294 EHPRLREMKYQFPAETIRATVVGAGAHTLEISG------STITYTDVILPLKNIP 342 (473)
T ss_pred hCchhhcceeeeecceeeeEEEecccceEEeec------cEEEEeeeEeeccCCc
Confidence 6552 334445445555777888877777787 34556665 3444433
No 73
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=97.35 E-value=0.0003 Score=63.78 Aligned_cols=75 Identities=24% Similarity=0.322 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCC-CCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTD-NSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~-~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
.++.+-+++.+.-.++..++..... ...++.|+++||.++++.+.+.+.+.+ +.++....+ .++.++|||+.|+.
T Consensus 121 ~~~~rAv~Egia~~~~~~~~~l~~~~~~~~~~i~~~GG~~~n~~~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 121 ADLARAVLEGIAFSLRQILEELEELTGIPIRRIRVSGGGAKNPLWMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSCESEEEEESGGGGSHHHHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHhhhhccccccccceeeEeccccccChHHHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 4444555555555444444442111 234889999999999999999999999 788877654 88999999999874
No 74
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=97.13 E-value=0.0054 Score=61.57 Aligned_cols=122 Identities=11% Similarity=0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHH-HHHcCCceeeeeechHHHHHHhhhccCCCCCceE
Q 041815 121 EEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDA-GAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNV 199 (475)
Q Consensus 121 ~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a-~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~v 199 (475)
-++...+|.|...+..-.-..-...+++|-+..-....|+.|.+. .+..|++.|.+=-.+. +++.++.........
T Consensus 94 wel~E~ilDY~F~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~~~~~~~~~ 170 (645)
T KOG0681|consen 94 WELMEQILDYIFGKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNYGKSSNKSG 170 (645)
T ss_pred HHHHHHHHHHHHHhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhccCcccCcce
Confidence 344445555544332111111234588998887777888888665 6777888765533322 222222222234478
Q ss_pred EEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHH
Q 041815 200 LIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQE 248 (475)
Q Consensus 200 lvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~ 248 (475)
+|+++|..+|.|-.+.-+...+ ....-+++||.+...-|.++|..+
T Consensus 171 liis~g~~~T~vipvldG~~il---~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 171 LIISMGHSATHVIPVLDGRLIL---KDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred EEEecCCCcceeEEEecCchhh---hcceeeccCcchHHHHHHHHHhcc
Confidence 9999999999987766444322 223347899988877777766554
No 75
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=97.10 E-value=0.019 Score=57.55 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=40.4
Q ss_pred ccceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHH
Q 041815 295 IDFSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQ 355 (475)
Q Consensus 295 ~~~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~ 355 (475)
..-.+.||.++++++.. .-..|..-++-.|++++++..+++.|+|.||++.-=-+.+++.
T Consensus 289 ~~~~i~itq~DIr~~ql-AKaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 289 IGDDIYITQKDIREFQL-AKAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SSS-EEEEHHHHHHHHH-HHHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCCEEEeHHHHHHHHH-HHHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34568899999987432 2344667778888999999999999999999998655555554
No 76
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=97.09 E-value=0.013 Score=60.95 Aligned_cols=78 Identities=19% Similarity=0.211 Sum_probs=49.0
Q ss_pred HHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHH
Q 041815 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFD 238 (475)
Q Consensus 159 r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 238 (475)
...+.++-+..|++.-.+-.|-+|-..+.+........+..+|+|+|||+|.+++++-++ +....+.++|.-.+.
T Consensus 94 ~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~-----~~~~~Sl~lG~vrl~ 168 (496)
T PRK11031 94 DEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQ-----ATSLFSLSMGCVTWL 168 (496)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCc-----eeeeeEEeccchHHH
Confidence 445566667779988444445555444444433332234689999999999999887443 233345678887766
Q ss_pred HHH
Q 041815 239 NRM 241 (475)
Q Consensus 239 ~~l 241 (475)
+.+
T Consensus 169 e~f 171 (496)
T PRK11031 169 ERY 171 (496)
T ss_pred HHh
Confidence 554
No 77
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=97.08 E-value=0.00026 Score=46.92 Aligned_cols=29 Identities=28% Similarity=1.009 Sum_probs=25.3
Q ss_pred cccccCCCC-CCceeecccC-CCCCCcCCCC
Q 041815 445 KCNGCKRPA-FGLMYRCELC-NFNLHIPCMF 473 (475)
Q Consensus 445 ~c~~c~~~~-~~~~~~~~~~-~~~~~~~~~~ 473 (475)
.||+|++.. .|.+|+|..| ||||+..|..
T Consensus 2 ~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~ 32 (45)
T cd02339 2 ICDTCRKQGIIGIRWKCAECPNYDLCTTCYH 32 (45)
T ss_pred CCCCCCCCCcccCeEECCCCCCccchHHHhC
Confidence 599999654 4999999999 9999999964
No 78
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=96.97 E-value=0.013 Score=59.42 Aligned_cols=187 Identities=20% Similarity=0.161 Sum_probs=101.6
Q ss_pred eEEEEEeCCCceEEEEEEEeC---C----eEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCC---CC----CCHHH
Q 041815 198 NVLIFDLGGGTFDVSLLTIEK---G----IFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKD---IS----GSPRA 263 (475)
Q Consensus 198 ~vlvvD~Gggt~dvsv~~~~~---~----~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~---~~----~~~~~ 263 (475)
+-|+.=+|-+|+++.+-+... | ....+....-..-||..-.=.|.+||.+...--.... .. .....
T Consensus 269 ~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~~~~~ 348 (544)
T COG1069 269 GSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGLWLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEIYESL 348 (544)
T ss_pred CeEEEEeccceEEEEecCCceecCccccccccccCcchhhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHHHHHH
Confidence 345555777777766554331 1 1111222222344777777778888877632110000 00 00122
Q ss_pred HHHHHHHHHHHHHHhcCCceeEEEEeccccC------cc-------ceEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 041815 264 VQRLRKDCERAKRILSSTSQTTIEIDSLYEG------ID-------FSSVMTRARFEELNMDLFRKCIKHVDMCLRTGKT 330 (475)
Q Consensus 264 ~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~------~~-------~~~~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~ 330 (475)
.+++..-.++++...+... .-+.++.+..+ .+ +++.-+.+.+..+....++-+.--.+..++....
T Consensus 349 ~~~~~~l~~~~~~~~~l~~-~l~~l~~f~GNRsP~aDp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~ 427 (544)
T COG1069 349 AQRLELLTEAAAAIPPLAS-GLHVLDWFNGNRSPLADPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFED 427 (544)
T ss_pred HHHHHHHHhhHhccCcccC-CcEecccccCCcCCCCCccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 2333333444444443222 12222322211 11 2233345545555555555544333333332222
Q ss_pred CCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 331 DNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 331 ~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
..-.|+.|..+||..+.|.+.+.+.+.. |.++..+ ..++++++|+|+.|+.-.|-
T Consensus 428 ~g~~Id~l~~sGG~~KN~llmql~aDvt-g~~v~i~-~s~~a~llGsAm~~avAag~ 482 (544)
T COG1069 428 QGIAIDTLFASGGIRKNPLLMQLYADVT-GRPVVIP-ASDQAVLLGAAMFAAVAAGV 482 (544)
T ss_pred cCCeeeEEEecCCcccCHHHHHHHHHhc-CCeEEee-cccchhhhHHHHHHHHHhcc
Confidence 3345899999999999999999999999 7777666 66889999999999988874
No 79
>PRK15027 xylulokinase; Provisional
Probab=96.96 E-value=0.0022 Score=66.72 Aligned_cols=53 Identities=28% Similarity=0.364 Sum_probs=47.1
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|+++||+++++...+.+.+.+ +.++....+.+++.++|||+.|+.-.|.
T Consensus 386 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~~~~~a~GaA~lA~~~~G~ 438 (484)
T PRK15027 386 KPQSVTLIGGGARSEYWRQMLADIS-GQQLDYRTGGDVGPALGAARLAQIAANP 438 (484)
T ss_pred CccEEEEeCcccCCHHHHHHHHHHh-CCeEEeecCCCcchHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 8888666677778899999999988774
No 80
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=96.93 E-value=0.0025 Score=67.20 Aligned_cols=86 Identities=17% Similarity=0.183 Sum_probs=65.2
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHH
Q 041815 300 VMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 300 ~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~ 379 (475)
.-+|..+.++++.+++.+.=.++..++........++.|.++||+++++...+.+.+.+ +.+|....++ ++.++|||+
T Consensus 409 ~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~g~~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~ 486 (541)
T TIGR01315 409 DRSKDGLALLYYATMEFIAYGTRQIVEAMNTAGHTIKSIFMSGGQCQNPLLMQLIADAC-DMPVLIPYVN-EAVLHGAAM 486 (541)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccEEEEecCcccCHHHHHHHHHHH-CCeeEecChh-HHHHHHHHH
Confidence 34676777777777777765555555543211234789999999999999999999999 8888877554 578999999
Q ss_pred HHHHHcCC
Q 041815 380 QAAVLSGN 387 (475)
Q Consensus 380 ~a~~~~~~ 387 (475)
.|+.-.|.
T Consensus 487 lA~~~~G~ 494 (541)
T TIGR01315 487 LGAKAAGT 494 (541)
T ss_pred HHHHhcCc
Confidence 99887773
No 81
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=96.86 E-value=0.0016 Score=53.81 Aligned_cols=45 Identities=16% Similarity=0.370 Sum_probs=29.0
Q ss_pred EEEEEeCCCceEEEEEEEeC-CeEEEEEEcCCCCCc--------hhHHH--HHHHHHHHHHH
Q 041815 199 VLIFDLGGGTFDVSLLTIEK-GIFKVKATAGDTHLG--------GEDFD--NRMVNHFIQEF 249 (475)
Q Consensus 199 vlvvD~Gggt~dvsv~~~~~-~~~~v~~~~~~~~~G--------G~~id--~~l~~~l~~~~ 249 (475)
++++|+|++++.+.+++.+. +.+++ ..+| +.+|. +.+..-+...+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~v------l~~g~~~s~gi~~g~Itd~~~i~~~i~~a~ 56 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRV------LGVGEVPSKGIKGGHITDIEDISKAIKIAI 56 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEE------ES----------HHHHH--HHHHHHHT--H
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEE------EEEecccccccCCCEEEEHHHHHHHHHHHH
Confidence 57999999999999999743 23333 3455 78887 77766665444
No 82
>PLN02669 xylulokinase
Probab=96.78 E-value=0.0043 Score=65.46 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHH
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
+++.+++.+.=.++..++..+.. ..++.|+++||+|+++.+.+.+.+.| +.+|.....+ ++.++|||+.|+.
T Consensus 421 ~~RAvlEg~a~~~r~~~~~l~~~-~~~~~i~~~GGgs~s~~w~Qi~ADVl-g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 421 EVRAIIEGQFLSMRAHAERFGMP-VPPKRIIATGGASANQSILKLIASIF-GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC-CCCcEEEEEcChhcCHHHHHHHHHHc-CCCeEecCCC-CchHHHHHHHHHH
Confidence 44555555554444444444322 35789999999999999999999999 7788776555 6889999999875
No 83
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=96.77 E-value=0.32 Score=47.49 Aligned_cols=46 Identities=20% Similarity=0.312 Sum_probs=31.4
Q ss_pred HcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEE
Q 041815 168 MAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLT 215 (475)
Q Consensus 168 ~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~ 215 (475)
..|++ +.+.++..|+|++-.........++++++.+|.|- -.+++.
T Consensus 96 ~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~ 141 (318)
T TIGR00744 96 RVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIII 141 (318)
T ss_pred HHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEE
Confidence 44664 67999999999876554333235788999999875 455553
No 84
>PRK10854 exopolyphosphatase; Provisional
Probab=96.75 E-value=0.019 Score=59.99 Aligned_cols=78 Identities=17% Similarity=0.214 Sum_probs=46.0
Q ss_pred HHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHH
Q 041815 159 RQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFD 238 (475)
Q Consensus 159 r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 238 (475)
.+.+.++-+..|++.-.+-.|-+|-..+.+...........+|+|+|||+|.+++++-++ .... .+.++|.-.+.
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~--~~~~---~S~~lG~vrl~ 173 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFE--PILV---ESRRMGCVSFA 173 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCC--eeEe---EEEecceeeHH
Confidence 344555666679887444444445444444443332235689999999999999987443 1111 12367766665
Q ss_pred HHH
Q 041815 239 NRM 241 (475)
Q Consensus 239 ~~l 241 (475)
+.+
T Consensus 174 e~f 176 (513)
T PRK10854 174 QLY 176 (513)
T ss_pred hhh
Confidence 543
No 85
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=96.60 E-value=0.0011 Score=44.47 Aligned_cols=31 Identities=35% Similarity=0.998 Sum_probs=27.9
Q ss_pred ccccccCCCCCCceeecccCC-CCCCcCCCCC
Q 041815 444 SKCNGCKRPAFGLMYRCELCN-FNLHIPCMFI 474 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~~-~~~~~~~~~~ 474 (475)
|.||+|+.+-.|.+|+|..|. |||...|...
T Consensus 1 ~~C~~C~~~i~g~r~~C~~C~d~dLC~~Cf~~ 32 (46)
T cd02249 1 YSCDGCLKPIVGVRYHCLVCEDFDLCSSCYAK 32 (46)
T ss_pred CCCcCCCCCCcCCEEECCCCCCCcCHHHHHCc
Confidence 689999999889999999998 9999998653
No 86
>PRK04123 ribulokinase; Provisional
Probab=96.55 E-value=0.0062 Score=64.41 Aligned_cols=52 Identities=29% Similarity=0.482 Sum_probs=45.0
Q ss_pred CCCeEEEecCC-CCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGS-ARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~-s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|+++||+ ++++.+.+.+.+.+ +.+|... .+.|+.++|||+.|+.-.|.
T Consensus 438 ~~~~i~~~GGg~s~s~~w~Qi~ADv~-g~pV~~~-~~~e~~alGaA~lA~~~~G~ 490 (548)
T PRK04123 438 PVEEVIAAGGIARKNPVLMQIYADVL-NRPIQVV-ASDQCPALGAAIFAAVAAGA 490 (548)
T ss_pred CcceEEEeCCCcccCHHHHHHHHHhc-CCceEec-CccccchHHHHHHHHHHhcc
Confidence 47899999999 99999999999999 7888665 45678899999999987773
No 87
>PRK00047 glpK glycerol kinase; Provisional
Probab=96.52 E-value=0.007 Score=63.23 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=45.3
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++...+.+.+.+ +.+|.... ..++.++|||+.|+.-.|.
T Consensus 403 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~-~~e~~a~GaA~~A~~~~G~ 454 (498)
T PRK00047 403 RLKELRVDGGAVANNFLMQFQADIL-GVPVERPV-VAETTALGAAYLAGLAVGF 454 (498)
T ss_pred CCceEEEecCcccCHHHHHHHHHhh-CCeeEecC-cccchHHHHHHHHhhhcCc
Confidence 4789999999999999999999999 88887664 4568899999999987773
No 88
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=96.47 E-value=0.0079 Score=62.94 Aligned_cols=51 Identities=24% Similarity=0.343 Sum_probs=44.9
Q ss_pred CCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 335 VDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 335 i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
++.|.++||+++++.+.+.+.+.| +.+|.... ..++.++|||+.|+.-.|.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~-g~pV~~~~-~~e~~alGaAl~aa~a~G~ 457 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL-GKDIVVPE-MAETTALGAALLAGLAVGV 457 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh-CCceEecC-cccchHHHHHHHHHhhcCc
Confidence 789999999999999999999999 88887665 4557899999999988774
No 89
>PF13941 MutL: MutL protein
Probab=96.42 E-value=0.014 Score=59.19 Aligned_cols=41 Identities=22% Similarity=0.507 Sum_probs=30.3
Q ss_pred EEEEecCCccEEEEEEE--CCcEEEEecCCCCcccceEEEEcCCcEEec
Q 041815 9 AIGIDLGTTYSCVGVWQ--HDRVEIIANDQGNRTTPSYVAFTDKECFVG 55 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~--~g~~~vi~~~~g~~~~Ps~v~~~~~~~~~G 55 (475)
++.+|||||+|++..++ .+..+++. ....||.| .++....|
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig----~a~apTTv--~~~Dv~~G 44 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG----QAEAPTTV--EPGDVTIG 44 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE----EEeCCCCc--CcccHHHH
Confidence 68899999999999998 77787774 34557777 22445555
No 90
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=96.41 E-value=0.056 Score=52.41 Aligned_cols=74 Identities=23% Similarity=0.368 Sum_probs=45.4
Q ss_pred HHHHHHHHcCCceeeeeechHHHHHHh-hhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHH
Q 041815 161 ATKDAGAMAGLNVLKIISEPTAAAIAY-GLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDN 239 (475)
Q Consensus 161 ~l~~a~~~agl~~~~~i~Ep~Aaa~~~-~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~ 239 (475)
.+...-+..|++. ++++..+=|.+.| +...... ....+++|+|||+|.++.+.-++ +....+.++|.-.+.+
T Consensus 90 ~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~-~~~~~v~DiGGGSte~~~~~~~~-----~~~~~Sl~lG~vrl~e 162 (300)
T TIGR03706 90 FLREAEAILGLPI-EVISGEEEARLIYLGVAHTLP-IADGLVVDIGGGSTELILGKDFE-----PGEGVSLPLGCVRLTE 162 (300)
T ss_pred HHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCC-CCCcEEEEecCCeEEEEEecCCC-----EeEEEEEccceEEhHH
Confidence 3344445679876 5776666655555 3322222 22359999999999999876433 2233346777777665
Q ss_pred HH
Q 041815 240 RM 241 (475)
Q Consensus 240 ~l 241 (475)
.+
T Consensus 163 ~f 164 (300)
T TIGR03706 163 QF 164 (300)
T ss_pred hh
Confidence 53
No 91
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=96.41 E-value=0.0079 Score=62.73 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=45.1
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++...+.+.+.+ +.++.... ..++.++|||+.|+.-.|.
T Consensus 399 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pv~~~~-~~e~~alGaA~~a~~~~G~ 450 (493)
T TIGR01311 399 EITKLRVDGGMTNNNLLMQFQADIL-GVPVVRPK-VTETTALGAAYAAGLAVGY 450 (493)
T ss_pred CCceEEEecccccCHHHHHHHHHhc-CCeeEecC-CCcchHHHHHHHHHhhcCc
Confidence 4789999999999999999999999 88887654 4578899999999887773
No 92
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=96.40 E-value=0.0086 Score=61.97 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=44.9
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSG 386 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~ 386 (475)
.++.|.++||+++++...+.+.+.+ +.+|....++ ++.++|||+.|+.-.|
T Consensus 393 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pV~~~~~~-e~~~lGaA~~a~~a~G 443 (465)
T TIGR02628 393 KASELLLVGGGSKNTLWNQIRANML-DIPVKVVDDA-ETTVAGAAMFGFYGVG 443 (465)
T ss_pred CcceEEEecCccCCHHHHHHhhhhc-CCeeEeccCC-cchHHHHHHHHHHhcC
Confidence 4689999999999999999999999 8888776554 6789999999998777
No 93
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=96.39 E-value=0.0093 Score=62.05 Aligned_cols=52 Identities=31% Similarity=0.508 Sum_probs=45.6
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|+++||+++++.+.+.+.+.+ +.++.... ..++.++|||+.|+.-.|.
T Consensus 390 ~~~~i~~~GG~s~s~~~~Q~~Adv~-g~pv~~~~-~~e~~a~GaA~~a~~~~g~ 441 (481)
T TIGR01312 390 PIQSIRLIGGGAKSPAWRQMLADIF-GTPVDVPE-GEEGPALGAAILAAWALGE 441 (481)
T ss_pred CcceEEEeccccCCHHHHHHHHHHh-CCceeecC-CCcchHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 78887764 5668899999999988773
No 94
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=96.39 E-value=0.0094 Score=62.85 Aligned_cols=52 Identities=29% Similarity=0.415 Sum_probs=45.6
Q ss_pred CCCeEEEecCC-CCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGS-ARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~-s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|+++||+ ++++.+.+.+.+.| +.+|....++ ++.++|||+.|+.-.|.
T Consensus 435 ~~~~i~~~GGg~a~s~~w~Qi~Adv~-g~pV~~~~~~-e~~a~GaA~lA~~~~G~ 487 (536)
T TIGR01234 435 PVEELMAAGGIARKNPVIMQIYADVT-NRPLQIVASD-QAPALGAAIFAAVAAGV 487 (536)
T ss_pred CcceEEEeCCccccCHHHHHHHHHhh-CCeeEeccCC-cchhHHHHHHHHHHcCC
Confidence 47899999999 99999999999999 8888777554 67899999999988773
No 95
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.38 E-value=0.037 Score=56.89 Aligned_cols=93 Identities=19% Similarity=0.189 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCC---HHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEE
Q 041815 124 SSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFT---DSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVL 200 (475)
Q Consensus 124 ~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~---~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vl 200 (475)
....+..|+..++...+..+.++ ..|-.... ...-+.+..+-+..|++.-.+--|-+|-..+.+.-.........+
T Consensus 54 i~R~~~aL~~f~e~~~~~~~~~v-~~vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~l 132 (492)
T COG0248 54 IERALSALKRFAELLDGFGAEEV-RVVATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGL 132 (492)
T ss_pred HHHHHHHHHHHHHHHhhCCCCEE-EEehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEE
Confidence 34444444444444444444442 22221111 122356677778889988656666666555555544433367899
Q ss_pred EEEeCCCceEEEEEEEe
Q 041815 201 IFDLGGGTFDVSLLTIE 217 (475)
Q Consensus 201 vvD~Gggt~dvsv~~~~ 217 (475)
|+|+|||+|.+++..-.
T Consensus 133 v~DIGGGStEl~~g~~~ 149 (492)
T COG0248 133 VIDIGGGSTELVLGDNF 149 (492)
T ss_pred EEEecCCeEEEEEecCC
Confidence 99999999999988743
No 96
>PRK10331 L-fuculokinase; Provisional
Probab=96.33 E-value=0.01 Score=61.48 Aligned_cols=82 Identities=17% Similarity=0.168 Sum_probs=56.5
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHH
Q 041815 301 MTRARFEELNMDLFRKCIKHVDMCLRTGK-TDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 301 itr~~~~~~~~~~~~~i~~~i~~~l~~~~-~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~ 379 (475)
-+|.++ .+.+++.+.-.++..++... .....++.|.++||+++++...+.+.+.+ +.++.... ..++.++|||+
T Consensus 358 ~~~~~l---~rAvlEgia~~~~~~~~~l~~~~~~~~~~i~~~GGga~s~~w~Qi~Advl-g~pV~~~~-~~e~~a~GaA~ 432 (470)
T PRK10331 358 TTRGHF---YRAALEGLTAQLKRNLQVLEKIGHFKASELLLVGGGSRNALWNQIKANML-DIPIKVLD-DAETTVAGAAM 432 (470)
T ss_pred cCHHHH---HHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEcccccCHHHHHHHHHhc-CCeeEecC-cccchHHHHHH
Confidence 356554 34444444433333333221 11224789999999999999999999999 88887665 45688999999
Q ss_pred HHHHHcCC
Q 041815 380 QAAVLSGN 387 (475)
Q Consensus 380 ~a~~~~~~ 387 (475)
.|+.-.|.
T Consensus 433 la~~~~G~ 440 (470)
T PRK10331 433 FGWYGVGE 440 (470)
T ss_pred HHHHhcCC
Confidence 99887773
No 97
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=96.27 E-value=0.012 Score=61.64 Aligned_cols=52 Identities=17% Similarity=0.248 Sum_probs=45.6
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++...+.+.+.+ +.++....++ ++.++|||+.|+.-.|.
T Consensus 401 ~~~~i~~~GGga~s~~w~Qi~Adv~-g~pv~~~~~~-e~~a~GaA~la~~~~G~ 452 (505)
T TIGR01314 401 PLNMIQATGGFASSEVWRQMMSDIF-EQEIVVPESY-ESSCLGACILGLKALGL 452 (505)
T ss_pred CCcEEEEecCcccCHHHHHHHHHHc-CCeeEecCCC-CcchHHHHHHHHHhcCc
Confidence 4789999999999999999999999 8888776544 68899999999988773
No 98
>PLN02295 glycerol kinase
Probab=96.25 E-value=0.012 Score=61.80 Aligned_cols=52 Identities=21% Similarity=0.260 Sum_probs=45.1
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++.+.+.+.+.+ +.+|.... ..++.++|||+.|+.-.|.
T Consensus 412 ~~~~i~~~GGga~s~~w~Qi~ADv~-g~pV~~~~-~~e~~alGaA~~A~~~~G~ 463 (512)
T PLN02295 412 GLFLLRVDGGATANNLLMQIQADLL-GSPVVRPA-DIETTALGAAYAAGLAVGL 463 (512)
T ss_pred CcceEEEeccchhCHHHHHHHHHhc-CCceEecC-ccccHHHHHHHHHHhhcCc
Confidence 4788999999999999999999999 88886654 4578899999999887773
No 99
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=96.15 E-value=0.012 Score=60.67 Aligned_cols=51 Identities=24% Similarity=0.318 Sum_probs=44.4
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++...+.+.+.+ +.+|... +.++.++|||+.|+.-.|.
T Consensus 387 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~--~~e~~a~GaA~~a~~~~G~ 437 (454)
T TIGR02627 387 PISQLHIVGGGSQNAFLNQLCADAC-GIRVIAG--PVEASTLGNIGVQLMALDE 437 (454)
T ss_pred CcCEEEEECChhhhHHHHHHHHHHh-CCceEcC--CchHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999 8888653 3678999999999987774
No 100
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=96.07 E-value=0.016 Score=60.96 Aligned_cols=52 Identities=27% Similarity=0.311 Sum_probs=45.4
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++...+.+.+.+ +.++....++ ++.++|||+.|+.-.|.
T Consensus 409 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~~~-e~~alGaA~lA~~~~G~ 460 (520)
T PRK10939 409 FPSSLVFAGGGSKGKLWSQILADVT-GLPVKVPVVK-EATALGCAIAAGVGAGI 460 (520)
T ss_pred CCcEEEEeCCcccCHHHHHHHHHhc-CCeeEEeccc-CchHHHHHHHHHHHhCC
Confidence 4789999999999999999999999 8888877544 57899999999888773
No 101
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=95.91 E-value=0.022 Score=58.04 Aligned_cols=75 Identities=21% Similarity=0.320 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC-CCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDN-SSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~-~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
...++.|.-.+++.|+....+. ..++.+.+.||.|+.|.+.+.+++.+ |.++..+.+.+. +++|||+.|+..++.
T Consensus 390 ~A~leai~fqtr~Il~am~~~~~~~i~~L~~~GG~s~N~ll~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 390 RAALEAIAFQTREILEAMERDGGHPISTLRVCGGLSKNPLLMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcceeeeccccccCHHHHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcCC
Confidence 3444444444444444332222 46888999999999999999999999 789999888777 999999999998885
No 102
>PRK09557 fructokinase; Reviewed
Probab=95.82 E-value=2 Score=41.63 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=29.1
Q ss_pred cCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEE
Q 041815 169 AGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLL 214 (475)
Q Consensus 169 agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~ 214 (475)
.+++ +.+.++..|+|++-.........+.++.+.+|.| .-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 4774 6799999999988755433333567888888855 333444
No 103
>PRK10640 rhaB rhamnulokinase; Provisional
Probab=95.79 E-value=0.021 Score=59.12 Aligned_cols=51 Identities=22% Similarity=0.233 Sum_probs=44.3
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.++.|.++||+++++...+.+.+.+ +.+|.... .++.++|||+.|+.-.|.
T Consensus 375 ~~~~i~~~GGga~s~~w~Qi~ADvl-g~pV~~~~--~ea~alGaa~~a~~a~G~ 425 (471)
T PRK10640 375 PFSQLHIVGGGCQNALLNQLCADAC-GIRVIAGP--VEASTLGNIGIQLMTLDE 425 (471)
T ss_pred CcceEEEECChhhhHHHHHHHHHHh-CCCeeeCC--hhHHHHHHHHHHHHHcCC
Confidence 4789999999999999999999999 78886543 478899999999988774
No 104
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=95.70 E-value=0.017 Score=51.84 Aligned_cols=31 Identities=39% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHcCCceeeeeechHHHHHH
Q 041815 156 DSQRQATKDAGAMAGLNVLKIISEPTAAAIA 186 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~ 186 (475)
....+.+.++++.+|++...++.+|.|++.+
T Consensus 156 ~~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 156 KSAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred hHHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 3567888999999999999999999998764
No 105
>KOG2531 consensus Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=95.61 E-value=0.044 Score=54.21 Aligned_cols=55 Identities=20% Similarity=0.358 Sum_probs=46.6
Q ss_pred HhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHH
Q 041815 326 RTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 326 ~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
+..+.+......|++|||.|+...|-+.|.+.| +.++... +..++.++|+|+.|+
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf-~apVy~~-~~~~sa~lG~A~ra~ 488 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVF-GAPVYTI-EGPNSAALGGAYRAA 488 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHh-CCCeEee-cCCchhhHHHHHHHH
Confidence 345666667899999999999999999999999 7777655 777889999999865
No 106
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=95.61 E-value=0.0061 Score=40.99 Aligned_cols=30 Identities=37% Similarity=0.917 Sum_probs=26.3
Q ss_pred ccccccCC-CCCCceeecccCC---CCCCcCCCC
Q 041815 444 SKCNGCKR-PAFGLMYRCELCN---FNLHIPCMF 473 (475)
Q Consensus 444 ~~c~~c~~-~~~~~~~~~~~~~---~~~~~~~~~ 473 (475)
|+||+|+. |=.|.+|.|..|. |||=..|-.
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~ 34 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVV 34 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHh
Confidence 78999998 8889999999997 999877754
No 107
>PRK09698 D-allose kinase; Provisional
Probab=95.54 E-value=2.5 Score=40.88 Aligned_cols=49 Identities=22% Similarity=0.333 Sum_probs=32.1
Q ss_pred CCCeEEEecCCCCc-----HHHHHHHHHHcC------CcccccCCCCcchhhchHHHHHH
Q 041815 334 SVDDVVIVGGSARI-----PKVQQLLQEFFN------GKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 334 ~i~~VvLvGG~s~~-----p~v~~~l~~~~~------~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
+++.|+|-||.+.. +.+++.+++... ..++......+.+.++|||..+-
T Consensus 236 dP~~IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~~ 295 (302)
T PRK09698 236 DPDAIILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILAH 295 (302)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHHH
Confidence 46789888887764 345666665431 12345555667888999998764
No 108
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=95.35 E-value=0.0087 Score=41.42 Aligned_cols=41 Identities=22% Similarity=0.476 Sum_probs=30.9
Q ss_pred ccceeccCcccccccccCCCC---CCceeecccCCCCCCcCCCC
Q 041815 433 HDLQLKNHKTLSKCNGCKRPA---FGLMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 433 h~l~~~~~~~~~~c~~c~~~~---~~~~~~~~~~~~~~~~~~~~ 473 (475)
|.++..+-..+-.|+.|++.= ....|+|..|++..|++|.-
T Consensus 1 H~f~~~~~~~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~ 44 (53)
T PF00130_consen 1 HHFVPTTFSKPTYCDVCGKFIWGLGKQGYRCSWCGLVCHKKCLS 44 (53)
T ss_dssp -EEEEEESSSTEB-TTSSSBECSSSSCEEEETTTT-EEETTGGC
T ss_pred CeEEEccCCCCCCCcccCcccCCCCCCeEEECCCCChHhhhhhh
Confidence 445555556668999999984 57899999999999999974
No 109
>PTZ00288 glucokinase 1; Provisional
Probab=95.21 E-value=0.95 Score=45.63 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=18.2
Q ss_pred CCCEEEEecCCccEEEEEEEC
Q 041815 6 AAPAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~ 26 (475)
..++||+|+|-|++++++.+.
T Consensus 25 ~~~~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 25 GPIFVGCDVGGTNARVGFARE 45 (405)
T ss_pred CCeEEEEEecCCceEEEEEec
Confidence 356999999999999999854
No 110
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=94.86 E-value=4 Score=39.46 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=27.6
Q ss_pred HHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCC
Q 041815 167 AMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGG 207 (475)
Q Consensus 167 ~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Ggg 207 (475)
+..|++ +.+.++..|+|++-.+.......+.++++.+|.|
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtG 133 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG 133 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCc
Confidence 344775 6799999999988554333222568888888876
No 111
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton]
Probab=94.65 E-value=0.042 Score=55.42 Aligned_cols=68 Identities=21% Similarity=0.310 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhCCCC--CCCCCeEEEecCCCCcHHHHHHHHHHcC-------CcccccCCCCcchhhchHHHHHHH
Q 041815 316 KCIKHVDMCLRTGKTD--NSSVDDVVIVGGSARIPKVQQLLQEFFN-------GKRLCKNINPDEAVAYGAAVQAAV 383 (475)
Q Consensus 316 ~i~~~i~~~l~~~~~~--~~~i~~VvLvGG~s~~p~v~~~l~~~~~-------~~~v~~~~~p~~ava~Gaa~~a~~ 383 (475)
.|.+++...|...-.. ...+.+|+|+||.|.+|++.++|...+- ...|....||-..+.+||+.+|+.
T Consensus 538 Gl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 538 GLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 3445555555553222 2238899999999999999999998762 346777889999999999999875
No 112
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=94.56 E-value=0.5 Score=45.88 Aligned_cols=72 Identities=22% Similarity=0.384 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCc---ccccCCCC----cchhhchHHHHHHH
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGK---RLCKNINP----DEAVAYGAAVQAAV 383 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~---~v~~~~~p----~~ava~Gaa~~a~~ 383 (475)
+..++.+...|...+.. ..+++.|+|+|-.+++|-+.+.+++.|... ++. ...+ -...|.|+|+.|.-
T Consensus 241 ea~~E~i~k~V~~l~~~----~~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~g 315 (343)
T PF07318_consen 241 EAMIESIVKAVASLLAS----VPDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANG 315 (343)
T ss_pred HHHHHHHHHHHHHHhcc----cCCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhh
Confidence 33444444444444333 245789999999999999988888777321 221 1122 24478999999987
Q ss_pred HcCC
Q 041815 384 LSGN 387 (475)
Q Consensus 384 ~~~~ 387 (475)
+.|.
T Consensus 316 laGG 319 (343)
T PF07318_consen 316 LAGG 319 (343)
T ss_pred hhcc
Confidence 7764
No 113
>PRK13321 pantothenate kinase; Reviewed
Probab=94.55 E-value=3.3 Score=39.09 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=17.3
Q ss_pred EEEEecCCccEEEEEEECC
Q 041815 9 AIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g 27 (475)
+++||+|.|++++|+++++
T Consensus 2 iL~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6899999999999999865
No 114
>PRK09604 UGMP family protein; Validated
Probab=94.52 E-value=5.3 Score=39.29 Aligned_cols=65 Identities=22% Similarity=0.272 Sum_probs=43.8
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcC--CcccccCCC---CcchhhchHHHHHHHHcC
Q 041815 317 CIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNIN---PDEAVAYGAAVQAAVLSG 386 (475)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~--~~~v~~~~~---p~~ava~Gaa~~a~~~~~ 386 (475)
+.+.++.+++. ..++.|+|+||.+...++++.|.+.+. +.++..+.. .|.++++|++=+-....|
T Consensus 242 l~~~~~~~~~~-----~~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 242 LVIKTKRALKQ-----TGVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred HHHHHHHHHHH-----hCCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 33444444443 346789999999999999999998873 334444432 377888887755444445
No 115
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=94.49 E-value=0.023 Score=38.58 Aligned_cols=30 Identities=27% Similarity=0.840 Sum_probs=25.6
Q ss_pred ccccccCCCCCC-ceeecccC-CCCCCcCCCC
Q 041815 444 SKCNGCKRPAFG-LMYRCELC-NFNLHIPCMF 473 (475)
Q Consensus 444 ~~c~~c~~~~~~-~~~~~~~~-~~~~~~~~~~ 473 (475)
|.||+|...-.+ .+|+|.+| ||||=..|-.
T Consensus 1 ~~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 1 YHCDYCSKDITGTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCCcCCCCCCCcEEECCCCCCcchhHHhhh
Confidence 579999988774 99999999 9999777753
No 116
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=94.24 E-value=0.09 Score=50.59 Aligned_cols=75 Identities=23% Similarity=0.324 Sum_probs=43.5
Q ss_pred HHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHH
Q 041815 162 TKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRM 241 (475)
Q Consensus 162 l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l 241 (475)
+.++-+..|++.-.+-.|-+|...+.+...........+++|+|||+|.++.++-+. +....+.++|.-.+.+.+
T Consensus 77 ~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~-----~~~~~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 77 LDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGK-----VVFSQSLPLGAVRLTERF 151 (285)
T ss_dssp HHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTE-----EEEEEEES--HHHHHHHH
T ss_pred HHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCe-----eeEeeeeehHHHHHHHHH
Confidence 444556679887544444444433333322222367899999999999998887433 223334789988776655
No 117
>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated
Probab=94.10 E-value=9.1 Score=40.39 Aligned_cols=66 Identities=18% Similarity=0.245 Sum_probs=44.7
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHc--CCcccccCC---CCcchhhchHHHHHHHHcCC
Q 041815 317 CIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFF--NGKRLCKNI---NPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~--~~~~v~~~~---~p~~ava~Gaa~~a~~~~~~ 387 (475)
+.+.++++++.. .++.|+|+||.+...++++.|.+.+ .+.++..+. -.|.++++|++.+....++.
T Consensus 233 l~~~~~~~~~~~-----g~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~g~ 303 (535)
T PRK09605 233 LTEVTERALAHT-----GKDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKAGD 303 (535)
T ss_pred HHHHHHHHHHHh-----CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHcCC
Confidence 344444554432 3568999999999999999999665 244555543 34788888888765555553
No 118
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=5.9 Score=38.54 Aligned_cols=230 Identities=18% Similarity=0.280 Sum_probs=118.0
Q ss_pred eeHHHHHHHHHHHHHHHHHhhc---C---CCCCeEEEEeCCCCCHHHHHHH---HHHHHHcCCceeeeeechHHHHHHhh
Q 041815 118 YAAEEISSMVLAKMRDIAEDYV---G---SPVSNAVVTVPAYFTDSQRQAT---KDAGAMAGLNVLKIISEPTAAAIAYG 188 (475)
Q Consensus 118 ~~~~~l~~~~L~~l~~~a~~~~---~---~~~~~~vitVP~~~~~~~r~~l---~~a~~~agl~~~~~i~Ep~Aaa~~~~ 188 (475)
+-||....+-.+.+-...++.+ + ..+.-+.+|.=+.....=+--. +..+-..+ ..+.-|+-.++-.++..
T Consensus 41 VvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~-kPli~VnH~~gHi~a~~ 119 (342)
T COG0533 41 VVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALN-KPLIPVNHLEGHIEAAR 119 (342)
T ss_pred cCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhC-CCEeecchHHHHHHHHH
Confidence 4667777776666555444443 2 2455566665444433322111 22222223 34556777777776665
Q ss_pred hccCCCCCceEEEEEeCCCceEEEEEEEeC-CeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHH
Q 041815 189 LDRKATSEKNVLIFDLGGGTFDVSLLTIEK-GIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRL 267 (475)
Q Consensus 189 ~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~-~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l 267 (475)
+.... ....+..=+-||.|.+. .+.+ +.++++....|..+ |+.||+ +.+..+...+..| .+++|
T Consensus 120 l~~~~--~~p~v~LlVSGGHTqli--~~~~~g~y~ilGeTlDdA~-Gea~DK---------vAR~lGL~yPGGp-~Ie~l 184 (342)
T COG0533 120 LETGL--AFPPVALLVSGGHTQLI--AVRGIGRYEVLGETLDDAA-GEAFDK---------VARLLGLGYPGGP-AIEKL 184 (342)
T ss_pred hccCC--CCCcEEEEEecCceEEE--EEcCCCcEEEEeeechhhh-hHHHHH---------HHHHhCCCCCCcH-HHHHH
Confidence 55442 22233333445566643 3334 67888988876544 466663 3333344444444 22222
Q ss_pred HHHHHHHHHHhcCCceeEEEEec-cccC--ccceE------------------EEcHHHHHHHHHH----HHHHHHHHHH
Q 041815 268 RKDCERAKRILSSTSQTTIEIDS-LYEG--IDFSS------------------VMTRARFEELNMD----LFRKCIKHVD 322 (475)
Q Consensus 268 ~~~~e~~K~~ls~~~~~~~~i~~-~~~~--~~~~~------------------~itr~~~~~~~~~----~~~~i~~~i~ 322 (475)
|++... + .+.+|. ...+ .|+++ .+..++.++++.. .++-+.+..+
T Consensus 185 ---A~~G~~------~-~~~fP~~~~~~~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L~~kt~ 254 (342)
T COG0533 185 ---AKKGDP------D-AFEFPRPMVKGKNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDMLVEKTE 254 (342)
T ss_pred ---HhcCCC------C-ceeCCccccCCCCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 221110 0 022221 1111 11111 2233344444433 4455566667
Q ss_pred HHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcC--CcccccCCCCcchhhchHHH
Q 041815 323 MCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 323 ~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~--~~~v~~~~~p~~ava~Gaa~ 379 (475)
++++..+ .+.++++||-+....+|+++++... |.++..+ .++.+.-.||.+
T Consensus 255 rAl~~~~-----~~~lvi~GGVaaN~~LR~~l~~~~~~~g~~~~~p-~~~lCtDNaaMI 307 (342)
T COG0533 255 RALKHTG-----KKELVIAGGVAANSRLREMLEEMCKERGAEVYIP-PLELCTDNAAMI 307 (342)
T ss_pred HHHHHhC-----CCEEEEeccHHHhHHHHHHHHHHHHhcCCEEEcC-ChHhccchHHHH
Confidence 7777643 5689999999999999999998762 3344443 566666666655
No 119
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=93.93 E-value=0.55 Score=43.27 Aligned_cols=71 Identities=24% Similarity=0.280 Sum_probs=40.3
Q ss_pred HHHHHHHHhhcCCCCCeEEEEeCCCCCHH-HHHHHHHHHHHcCCceeeeeechHHHHHHhhhccC--CCCCceEEEEEeC
Q 041815 129 AKMRDIAEDYVGSPVSNAVVTVPAYFTDS-QRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRK--ATSEKNVLIFDLG 205 (475)
Q Consensus 129 ~~l~~~a~~~~~~~~~~~vitVP~~~~~~-~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~--~~~~~~vlvvD~G 205 (475)
+.+.+..+...+.++ .++++-..|... ..+..++. |||.+....+- ....+..++||+|
T Consensus 77 e~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD~G 138 (330)
T COG1548 77 EDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVDMG 138 (330)
T ss_pred HHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEecC
Confidence 455666666666554 678888777654 22222222 22222211110 0126779999999
Q ss_pred CCceEEEEEEEe
Q 041815 206 GGTFDVSLLTIE 217 (475)
Q Consensus 206 ggt~dvsv~~~~ 217 (475)
+.|+|+.-+.-+
T Consensus 139 STTtDIIPi~~g 150 (330)
T COG1548 139 STTTDIIPIKDG 150 (330)
T ss_pred CcccceEeecch
Confidence 999998766543
No 120
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=93.79 E-value=5.2 Score=39.01 Aligned_cols=57 Identities=21% Similarity=0.343 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcC--CcccccCCC---CcchhhchHH
Q 041815 317 CIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNIN---PDEAVAYGAA 378 (475)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~--~~~v~~~~~---p~~ava~Gaa 378 (475)
+.+.++.+++. ..++.|+|+||.+....+++.|.+... +.++..+.. -|.++++|++
T Consensus 247 l~~~~~~~~~~-----~~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 247 LVEKTKRALKK-----TGLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred HHHHHHHHHHH-----hCCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 34455555543 246789999999999999999998872 234444332 2667777765
No 121
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=93.79 E-value=0.037 Score=36.57 Aligned_cols=28 Identities=32% Similarity=1.044 Sum_probs=23.1
Q ss_pred cccccCC-CCCCceeecccCC-CCCCcCCC
Q 041815 445 KCNGCKR-PAFGLMYRCELCN-FNLHIPCM 472 (475)
Q Consensus 445 ~c~~c~~-~~~~~~~~~~~~~-~~~~~~~~ 472 (475)
.||+|+. |=.|.+|.|..|. |||=..|-
T Consensus 2 ~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf 31 (45)
T cd02344 2 TCDGCQMFPINGPRFKCRNCDDFDFCENCF 31 (45)
T ss_pred CCCCCCCCCCccCeEECCCCCCccchHHhh
Confidence 6999995 6668999999985 88877664
No 122
>PLN02666 5-oxoprolinase
Probab=93.76 E-value=0.83 Score=52.62 Aligned_cols=78 Identities=9% Similarity=0.084 Sum_probs=51.3
Q ss_pred EEcHHHHHHHHHHHHHH-HHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHH
Q 041815 300 VMTRARFEELNMDLFRK-CIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAA 378 (475)
Q Consensus 300 ~itr~~~~~~~~~~~~~-i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa 378 (475)
.++-++..+-+..++++ ..+.|+......+.++.+ -.++-.||++ |...-.|.+.++-..+..+.+|.-..|+|++
T Consensus 453 g~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~-~~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~ 529 (1275)
T PLN02666 453 DMSVEEVALGFVRVANEAMCRPIRQLTEMKGYETAN-HALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMG 529 (1275)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-ceEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHH
Confidence 34566666655555444 455666666666666543 2344455554 7889999999943348888899888899987
Q ss_pred HH
Q 041815 379 VQ 380 (475)
Q Consensus 379 ~~ 380 (475)
+-
T Consensus 530 ~a 531 (1275)
T PLN02666 530 LA 531 (1275)
T ss_pred hh
Confidence 63
No 123
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=93.66 E-value=0.62 Score=46.12 Aligned_cols=71 Identities=20% Similarity=0.276 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccC----CCCcchhhchHHHHHHH
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN----INPDEAVAYGAAVQAAV 383 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~----~~p~~ava~Gaa~~a~~ 383 (475)
++.-+.+-+...|.++++... ...+.|+++||+++.|.+.++|++.++ .++... .+++.-=|..-|++|..
T Consensus 264 ~~aTlt~~TA~sI~~~~~~~~---~~~~~vlv~GGGa~N~~Lm~~L~~~l~-~~v~~~~~~G~~~da~EA~aFA~La~~ 338 (365)
T PRK09585 264 VQATLTELTAASIARAVRRLP---PGPDELLVCGGGARNPTLMERLAALLP-TEVATTDALGIDGDAKEALAFAWLAVR 338 (365)
T ss_pred HHHHHHHHHHHHHHHHHHhcc---CCCCEEEEECCCcchHHHHHHHHHhcC-CcccCHHHcCCChhHHHHHHHHHHHHH
Confidence 334444444555555555432 224689999999999999999999995 434322 24554445566666643
No 124
>PRK12408 glucokinase; Provisional
Probab=93.43 E-value=3.6 Score=40.58 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=27.7
Q ss_pred HHcCCceeeeeechHHHHHHhhhcc---------CCCCC-ceEEEEEeCCC
Q 041815 167 AMAGLNVLKIISEPTAAAIAYGLDR---------KATSE-KNVLIFDLGGG 207 (475)
Q Consensus 167 ~~agl~~~~~i~Ep~Aaa~~~~~~~---------~~~~~-~~vlvvD~Ggg 207 (475)
+..|++.+.++|+-.|+|++-.... ..... ..++++=+|-|
T Consensus 106 ~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTG 156 (336)
T PRK12408 106 AQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTG 156 (336)
T ss_pred HHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCc
Confidence 3458877999999999999864331 11112 46778877765
No 125
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=93.30 E-value=0.045 Score=35.36 Aligned_cols=28 Identities=29% Similarity=0.834 Sum_probs=23.1
Q ss_pred cccccCC-CCCCceeeccc-CCCCCCcCCC
Q 041815 445 KCNGCKR-PAFGLMYRCEL-CNFNLHIPCM 472 (475)
Q Consensus 445 ~c~~c~~-~~~~~~~~~~~-~~~~~~~~~~ 472 (475)
.||+|+. |=.|.+|+|.. .||||=..|-
T Consensus 2 ~CDgCg~~PI~G~RykC~~C~dyDLC~~C~ 31 (43)
T cd02342 2 QCDGCGVLPITGPRYKSKVKEDYDLCTICF 31 (43)
T ss_pred CCCCCCCCcccccceEeCCCCCCccHHHHh
Confidence 6999997 45599999996 5899977773
No 126
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=93.09 E-value=7.6 Score=38.22 Aligned_cols=205 Identities=17% Similarity=0.183 Sum_probs=104.7
Q ss_pred CCCeEEEEe-CCCCCHHHHH--HHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeC
Q 041815 142 PVSNAVVTV-PAYFTDSQRQ--ATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEK 218 (475)
Q Consensus 142 ~~~~~vitV-P~~~~~~~r~--~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~ 218 (475)
++..+.+|. |..|+--..- .-+-.+...+.+ +.=++.-+|-+++..+......+ +++=+-||+|.+.. ...
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~P-ligV~HlegHi~a~~l~~~~~~P---l~LlVSGGhT~l~~--~~~ 143 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKP-LVGVNHCVAHIEMGRLVTGAENP---VVLYVSGGNTQVIA--YSE 143 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCC-EeecchHHHHHHHHhhccCCCCC---eEEEEeCCceEEEE--ecC
Confidence 455667776 6655543221 123334444444 45566677766665554332213 66667788888765 445
Q ss_pred CeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCC-CCCCHHHHHHHHHHHHHHHHHhcCCceeEEEEeccccCccc
Q 041815 219 GIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKD-ISGSPRAVQRLRKDCERAKRILSSTSQTTIEIDSLYEGIDF 297 (475)
Q Consensus 219 ~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~e~~K~~ls~~~~~~~~i~~~~~~~~~ 297 (475)
+.++++....|.. -|+-||+.= +..+.. .+..-..+++|.+... . .+.+|....+.++
T Consensus 144 ~~~~ilG~T~Dda-~Gea~DKva---------r~LGL~~yp~gGp~iE~lA~~g~---~--------~~~~P~~~~~~df 202 (345)
T PTZ00340 144 HRYRIFGETIDIA-VGNCLDRFA---------RLLNLSNDPAPGYNIEQLAKKGK---N--------LIELPYVVKGMDM 202 (345)
T ss_pred CeEEEEEeecccc-hhHHHHHHH---------HHhCCCCCCCChHHHHHHHhhCC---C--------ccCCCCCCCCCcE
Confidence 7789999887654 457776432 112222 1112334444422111 0 1111111111111
Q ss_pred eE----------------------------EEcHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcH
Q 041815 298 SS----------------------------VMTRARFEELN-MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIP 348 (475)
Q Consensus 298 ~~----------------------------~itr~~~~~~~-~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p 348 (475)
++ ...+.++..-+ +-+++.+.+.+.++++.. .++.++++||-+...
T Consensus 203 SFSGlkTav~~~i~~~~~~~~~~~~~~~~~~~~~~diaasfq~~v~~~L~~k~~~a~~~~-----~~~~lvv~GGVAaN~ 277 (345)
T PTZ00340 203 SFSGILTYIEDLVEHPQFKDVVSEIVPPEEEFFTDDLCFSLQETIFAMLVEVTERAMSHC-----GSNEVLIVGGVGCNL 277 (345)
T ss_pred ECccHHHHHHHHHHhccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCCeEEEcCCHHHHH
Confidence 11 00122222212 223344455555666543 367899999999999
Q ss_pred HHHHHHHHHcC--CcccccCCCCcchhhchHHH
Q 041815 349 KVQQLLQEFFN--GKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 349 ~v~~~l~~~~~--~~~v~~~~~p~~ava~Gaa~ 379 (475)
+||+++++... +.++..+ .|..+.-.||.+
T Consensus 278 ~LR~~l~~~~~~~~~~~~~p-~~~~ctDNaaMI 309 (345)
T PTZ00340 278 RLQEMMQQMAKERGGKLFAM-DERYCIDNGAMI 309 (345)
T ss_pred HHHHHHHHHHHHcCCEEEeC-ChHhhhhhHHHH
Confidence 99999999863 4455444 455555444443
No 127
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.70 E-value=10 Score=36.79 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=25.9
Q ss_pred eeeeeechHHHHHHhhhccCCCCCceEEEEEeCCC
Q 041815 173 VLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGG 207 (475)
Q Consensus 173 ~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Ggg 207 (475)
.+.+-++..|+|++-.+.........++++-+|-|
T Consensus 109 Pv~veNDan~aalaE~~~g~~~~~~~~~~i~~gtG 143 (314)
T COG1940 109 PVFVENDANAAALAEAWFGAGRGIDDVVYITLGTG 143 (314)
T ss_pred CEEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccc
Confidence 45899999999998776654333557777777766
No 128
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=92.67 E-value=0.069 Score=35.30 Aligned_cols=30 Identities=30% Similarity=0.992 Sum_probs=26.3
Q ss_pred ccccccCCCCCCceeecccC-CCCCCcCCCC
Q 041815 444 SKCNGCKRPAFGLMYRCELC-NFNLHIPCMF 473 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~ 473 (475)
+.|+.|+.+=.|.+|+|..| ||||=+.|-.
T Consensus 5 ~~C~~C~~~i~g~ry~C~~C~d~dlC~~Cf~ 35 (44)
T smart00291 5 YSCDTCGKPIVGVRYHCLVCPDYDLCQSCFA 35 (44)
T ss_pred cCCCCCCCCCcCCEEECCCCCCccchHHHHh
Confidence 68999999878999999999 9999777743
No 129
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=92.49 E-value=0.97 Score=44.03 Aligned_cols=122 Identities=16% Similarity=0.210 Sum_probs=69.8
Q ss_pred eHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCC------------CCCHHHHHHHHHHHHHcCCceeeeeechHHHHHH
Q 041815 119 AAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPA------------YFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIA 186 (475)
Q Consensus 119 ~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~------------~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~ 186 (475)
+.++++..||+.+... ...+..++|+|+. .|+-. . .+..+..|++.+.+||+=+|.|++
T Consensus 37 s~~~~l~~~l~~~~~~-----~~~p~~~~iavAGPV~~~~~~lTN~~W~i~-~---~~l~~~lg~~~v~liNDfeA~a~g 107 (316)
T PF02685_consen 37 SFEDALADYLAELDAG-----GPEPDSACIAVAGPVRDGKVRLTNLPWTID-A---DELAQRLGIPRVRLINDFEAQAYG 107 (316)
T ss_dssp HHHHHHHHHHHHTCHH-----HTCEEEEEEEESS-EETTCEE-SSSCCEEE-H---HHCHCCCT-TCEEEEEHHHHHHHH
T ss_pred CHHHHHHHHHHhcccC-----CCccceEEEEEecCccCCEEEecCCCcccc-H---HHHHHHhCCceEEEEcccchheec
Confidence 5566777777654111 1234457777763 13211 1 222345588999999999999988
Q ss_pred hhhccCC----------CCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEc-CCCCCch-hHHHHHHHHHHHHHHH
Q 041815 187 YGLDRKA----------TSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATA-GDTHLGG-EDFDNRMVNHFIQEFK 250 (475)
Q Consensus 187 ~~~~~~~----------~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~-~~~~~GG-~~id~~l~~~l~~~~~ 250 (475)
...-... ......+|+=.|.|- -++.+--.++...++.+. ++..+.- ++.+..|.++|.+++.
T Consensus 108 l~~L~~~~l~~l~~g~~~~~~~~~Vig~GTGL-G~a~l~~~~~~~~v~~sEgGH~~fap~~~~e~~l~~~l~~~~~ 182 (316)
T PF02685_consen 108 LPALDPEDLVTLQPGEPDPGGPRAVIGPGTGL-GVALLVPDGDGYYVLPSEGGHVDFAPRTDEEAELLRFLRRRYG 182 (316)
T ss_dssp HHHHHHCCECCHCCEESSTTS-EEEEEESSSE-EEEEEEEETTEEEEEEE-GGGSB---SSHHHHHHHHHHHHHCT
T ss_pred cCCCCHHHeeeccCCCCCCCCcEEEEEcCCCc-EEEEEEecCCceEeCCCccccccCCCCCHHHHHHHHHHHHhcC
Confidence 7442221 146788999999774 444444455554455543 4444443 5677888888888763
No 130
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=92.47 E-value=2.4 Score=45.78 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.2
Q ss_pred CCCCEEEEecCCccEEEEEEE
Q 041815 5 EAAPAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 5 ~~~~vvGIDlGTt~s~va~~~ 25 (475)
....++|||+|.|++++|+..
T Consensus 16 ~~~~~L~iDIGGT~ir~al~~ 36 (638)
T PRK14101 16 ADGPRLLADVGGTNARFALET 36 (638)
T ss_pred CCCCEEEEEcCchhheeeeec
Confidence 346799999999999999884
No 131
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=92.30 E-value=1.6 Score=40.66 Aligned_cols=73 Identities=22% Similarity=0.373 Sum_probs=53.3
Q ss_pred CCCCCeEEE--EeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEE
Q 041815 140 GSPVSNAVV--TVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLT 215 (475)
Q Consensus 140 ~~~~~~~vi--tVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~ 215 (475)
+..+..++. .+|.+|+.- +++.+.+...|.+. .+.+-..||.+..+.+........++++|+|-|.|-..++.
T Consensus 111 g~~~~~~~y~~~~P~~~TRm--~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTRM--RAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHHH--HHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe
Confidence 345567777 788886543 56666666666666 66777777777777776654578999999999998888773
No 132
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=92.26 E-value=0.074 Score=36.06 Aligned_cols=28 Identities=32% Similarity=0.992 Sum_probs=23.3
Q ss_pred cccccC-CCCCCceeecccC-CCCCCcCCC
Q 041815 445 KCNGCK-RPAFGLMYRCELC-NFNLHIPCM 472 (475)
Q Consensus 445 ~c~~c~-~~~~~~~~~~~~~-~~~~~~~~~ 472 (475)
.||+|+ .|=.|.+|+|..| ||||=..|-
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf 31 (49)
T cd02338 2 SCDGCGKSNFTGRRYKCLICYDYDLCADCY 31 (49)
T ss_pred CCCCCcCCCcEEeeEEeCCCCCCccchhHH
Confidence 699999 6666999999998 788877664
No 133
>PRK00292 glk glucokinase; Provisional
Probab=92.00 E-value=13 Score=36.25 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=29.3
Q ss_pred HHHcCCceeeeeechHHHHHHhhhc--------cCCC--CCceEEEEEeCCCc
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLD--------RKAT--SEKNVLIFDLGGGT 208 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~--------~~~~--~~~~vlvvD~Gggt 208 (475)
.+..|++.+.+.|+..|+|++-... .... ....++++-+|.|-
T Consensus 87 ~~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 87 KQELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 3445887789999999999986431 1111 13678888888763
No 134
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=91.96 E-value=0.093 Score=35.53 Aligned_cols=39 Identities=21% Similarity=0.482 Sum_probs=29.1
Q ss_pred ceeccCcccccccccCCCCC---CceeecccCCCCCCcCCCC
Q 041815 435 LQLKNHKTLSKCNGCKRPAF---GLMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 435 l~~~~~~~~~~c~~c~~~~~---~~~~~~~~~~~~~~~~~~~ 473 (475)
+.......+-.|+.|+..=. ...|+|..|++-.|+.|+-
T Consensus 3 f~~~~~~~~~~C~~C~~~i~~~~~~~~~C~~C~~~~H~~C~~ 44 (50)
T cd00029 3 FVRKSFFKPTFCDVCRKSIWGLFKQGLRCSWCKVKCHKKCAD 44 (50)
T ss_pred cEEeeCCCCCChhhcchhhhccccceeEcCCCCCchhhhhhc
Confidence 33333334467999988743 3899999999999999974
No 135
>COG2377 Predicted molecular chaperone distantly related to HSP70-fold metalloproteases [Posttranslational modification, protein turnover, chaperones]
Probab=91.95 E-value=2.6 Score=41.19 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=41.5
Q ss_pred CCCCCeEEEecCCCCcHHHHHHHHHHcCCccccc----CCCCcchhhchHHHHHHHH
Q 041815 332 NSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCK----NINPDEAVAYGAAVQAAVL 384 (475)
Q Consensus 332 ~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~----~~~p~~ava~Gaa~~a~~~ 384 (475)
..+.+..+++||+.+.|++.+.+...+++.+|.. ..+++..=|.+-|++|...
T Consensus 288 ~~~p~~l~vcGGG~~N~llm~rLa~l~~g~~V~~t~~~g~~gd~~EA~afA~LA~r~ 344 (371)
T COG2377 288 QGDPRRLVVCGGGRRNPLLMARLAALLEGVEVATTDEAGLDGDAVEAEAFAWLAWRT 344 (371)
T ss_pred cCCCceeEeecCCccCHHHHHHHHHhcCCCeeeechhcCCCcchhhHHHHHHHHHHH
Confidence 3567899999999999999999999998766653 3366766677777777654
No 136
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=91.85 E-value=4.6 Score=37.72 Aligned_cols=43 Identities=21% Similarity=0.289 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCC
Q 041815 304 ARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSAR 346 (475)
Q Consensus 304 ~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~ 346 (475)
+..+.+..-++......|+..+++.......-..++++||.++
T Consensus 182 ~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 182 NTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred chHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 4455566666666666666666553322223469999999975
No 137
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=91.70 E-value=0.52 Score=46.67 Aligned_cols=75 Identities=27% Similarity=0.264 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccC----CCCcchhhchHHHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKN----INPDEAVAYGAAVQAA 382 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~----~~p~~ava~Gaa~~a~ 382 (475)
++++..+.+-+.+.|.+.++.... .++.|+++||+++.+.+.+.|++.+++.+|... .+|+.-=|.+-|++|.
T Consensus 260 ~D~~aTlt~~TA~sI~~~i~~~~~---~~~~v~v~GGGa~N~~L~~~L~~~l~~~~v~~~~~~gi~~~~~EA~aFA~La~ 336 (364)
T PF03702_consen 260 EDILATLTEFTAQSIADAIRRFPP---QPDEVYVCGGGARNPFLMERLQERLPGIPVKTTDELGIPPDAKEAMAFAWLAY 336 (364)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-T---T-EEEEEESGGGG-HHHHHHHHHH-TTCEEEEGGGGTS-CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEECCCcCCHHHHHHHHhhCCCCEEecHHHcCCCHHHHHHHHHHHHHH
Confidence 445555555555666666665332 278999999999999999999999977555432 3455444556666665
Q ss_pred HH
Q 041815 383 VL 384 (475)
Q Consensus 383 ~~ 384 (475)
..
T Consensus 337 ~~ 338 (364)
T PF03702_consen 337 RR 338 (364)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 138
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=91.62 E-value=0.072 Score=34.55 Aligned_cols=28 Identities=32% Similarity=0.954 Sum_probs=22.8
Q ss_pred ccccccCCCCCCceeecccC-CCCCCcCCC
Q 041815 444 SKCNGCKRPAFGLMYRCELC-NFNLHIPCM 472 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~ 472 (475)
|.||+|...+ |.+|+|..| ||||=..|-
T Consensus 1 y~C~~C~~~~-~~r~~C~~C~dfDLC~~C~ 29 (41)
T cd02337 1 YTCNECKHHV-ETRWHCTVCEDYDLCITCY 29 (41)
T ss_pred CcCCCCCCcC-CCceECCCCcchhhHHHHh
Confidence 6799998754 599999999 899866653
No 139
>PTZ00297 pantothenate kinase; Provisional
Probab=91.46 E-value=24 Score=41.79 Aligned_cols=74 Identities=12% Similarity=0.062 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecC-CCCcHHHHHHHHHHc-----CCcccccCCCCcchhhchHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGG-SARIPKVQQLLQEFF-----NGKRLCKNINPDEAVAYGAAVQ 380 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG-~s~~p~v~~~l~~~~-----~~~~v~~~~~p~~ava~Gaa~~ 380 (475)
+++++.++.-|.+-|-+.--- .-...+++.|+++|+ ...-|...+.|..+. +..+.....+....-|+||++.
T Consensus 1365 ~Di~~sll~~is~nIgqia~l-~a~~~~~~~i~f~G~~i~~~~~~~~~l~~a~~~ws~g~~~a~fl~hegy~ga~Ga~~~ 1443 (1452)
T PTZ00297 1365 IDIVRSLLNMISSNVTQLAYL-HSRVQGVPNIFFAGGFVRDNPIIWSHISSTMKYWSKGECHAHFLEHDGYLGALGCATL 1443 (1452)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHcCCCEEEEecchhcCCHHHHHHHHHHHHHHcCCCeeEEEecCccccHHhhhhhc
Confidence 445555555554444332111 112356889999999 466888888887665 2445666667788889999886
Q ss_pred H
Q 041815 381 A 381 (475)
Q Consensus 381 a 381 (475)
.
T Consensus 1444 ~ 1444 (1452)
T PTZ00297 1444 D 1444 (1452)
T ss_pred C
Confidence 3
No 140
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=91.27 E-value=0.64 Score=46.88 Aligned_cols=81 Identities=17% Similarity=0.210 Sum_probs=57.4
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHH
Q 041815 301 MTRARFEE-LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 301 itr~~~~~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~ 379 (475)
.++++|.. .++.+.-++.+.++..-++++. .++.+-+=||.++..++.+...+.+ +.+|.++.+ .|..|+|||+
T Consensus 371 t~~~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADil-g~~V~Rp~~-~EtTAlGaA~ 445 (499)
T COG0554 371 TTKAHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADIL-GVPVERPVV-LETTALGAAY 445 (499)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHh-CCeeecccc-chhhHHHHHH
Confidence 34555432 2333333444444444344443 4778888899999999999999999 888888754 5678999999
Q ss_pred HHHHHcC
Q 041815 380 QAAVLSG 386 (475)
Q Consensus 380 ~a~~~~~ 386 (475)
.|+.-.|
T Consensus 446 lAGla~G 452 (499)
T COG0554 446 LAGLAVG 452 (499)
T ss_pred HHhhhhC
Confidence 9998887
No 141
>PRK14878 UGMP family protein; Provisional
Probab=91.20 E-value=16 Score=35.79 Aligned_cols=92 Identities=16% Similarity=0.085 Sum_probs=50.2
Q ss_pred CCCeEEEEe-CCCCCHHHH--HHHHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeC
Q 041815 142 PVSNAVVTV-PAYFTDSQR--QATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEK 218 (475)
Q Consensus 142 ~~~~~vitV-P~~~~~~~r--~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~ 218 (475)
++..+.+|. |..|+--.. ..-+..+...+.+ +..++--+|-+++.......+ ..-++++|= |++.+..++ .
T Consensus 65 did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p-~~~v~h~~~Ha~sa~~~s~~~-~~l~l~vsG--g~t~i~~~~--~ 138 (323)
T PRK14878 65 DIDAVAVSQGPGLGPALRVGATAARALALKYNKP-LVPVNHCIAHIEIGRLTTGAK-DPVVLYVSG--GNTQVLAFR--G 138 (323)
T ss_pred HCCEEEEecCCCcccchHHHHHHHHHHHHHhCCC-ccccchHHHHHHhhhhcCCCC-CCEEEEEEc--CCeEEEEEe--C
Confidence 456677877 666663221 1123334444544 455666666655544433322 235666664 477765555 5
Q ss_pred CeEEEEEEcCCCCCchhHHHHH
Q 041815 219 GIFKVKATAGDTHLGGEDFDNR 240 (475)
Q Consensus 219 ~~~~v~~~~~~~~~GG~~id~~ 240 (475)
+.++++.... ..--|+-||..
T Consensus 139 ~~~~~~~~t~-d~s~Gr~fD~v 159 (323)
T PRK14878 139 GRYRVFGETL-DIAIGNALDTF 159 (323)
T ss_pred CeEEEeeeec-CcchhHHHHHH
Confidence 6688887743 34456666643
No 142
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=90.92 E-value=0.12 Score=34.88 Aligned_cols=29 Identities=52% Similarity=1.189 Sum_probs=23.4
Q ss_pred cccccCC-CCCCceeecccC-CCCCCcCCCC
Q 041815 445 KCNGCKR-PAFGLMYRCELC-NFNLHIPCMF 473 (475)
Q Consensus 445 ~c~~c~~-~~~~~~~~~~~~-~~~~~~~~~~ 473 (475)
.||+|+. |=.|.+|+|-.| ||||=..|-.
T Consensus 2 ~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~ 32 (49)
T cd02334 2 KCNICKEFPITGFRYRCLKCFNYDLCQSCFF 32 (49)
T ss_pred CCCCCCCCCceeeeEECCCCCCcCchHHHHh
Confidence 6999995 566999999987 7888777643
No 143
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=90.87 E-value=0.049 Score=36.39 Aligned_cols=28 Identities=36% Similarity=1.080 Sum_probs=20.5
Q ss_pred ccccccCC-CCCCceeecccCC-CCCCcCC
Q 041815 444 SKCNGCKR-PAFGLMYRCELCN-FNLHIPC 471 (475)
Q Consensus 444 ~~c~~c~~-~~~~~~~~~~~~~-~~~~~~~ 471 (475)
+.||+|+. |-.|.+|.|..|. |||=..|
T Consensus 5 ~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C 34 (46)
T PF00569_consen 5 YTCDGCGTDPIIGVRYHCLVCPDYDLCEDC 34 (46)
T ss_dssp CE-SSS-SSSEESSEEEESSSSS-EEEHHH
T ss_pred eECcCCCCCcCcCCeEECCCCCCCchhhHH
Confidence 79999998 7779999999985 7775544
No 144
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=90.50 E-value=0.17 Score=41.79 Aligned_cols=21 Identities=19% Similarity=0.306 Sum_probs=17.3
Q ss_pred EEEEecCCccEEEEEEECCcE
Q 041815 9 AIGIDLGTTYSCVGVWQHDRV 29 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~ 29 (475)
+++||+|++.+.+++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999987643
No 145
>COG3426 Butyrate kinase [Energy production and conversion]
Probab=90.23 E-value=3.4 Score=38.79 Aligned_cols=48 Identities=23% Similarity=0.224 Sum_probs=36.3
Q ss_pred CCCCCeEEEecCCCCcHHHHHHHHHHcC---CcccccCCCCcchhhchHHH
Q 041815 332 NSSVDDVVIVGGSARIPKVQQLLQEFFN---GKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 332 ~~~i~~VvLvGG~s~~p~v~~~l~~~~~---~~~v~~~~~p~~ava~Gaa~ 379 (475)
+..+|.|+|+||.++...+-++|.+... ...+.-..|-.+|.|.|+..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4568999999999999999999998763 22333344556788888865
No 146
>KOG2708 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=90.19 E-value=8 Score=35.16 Aligned_cols=63 Identities=16% Similarity=0.319 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcC--CcccccCCCCcchhhchHHH
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~--~~~v~~~~~p~~ava~Gaa~ 379 (475)
+.++.-+.+.-++++.-.+ -+.|++|||-...-.+|+++..... +-++. ..|-..++-.|+.+
T Consensus 236 EtvFamLVEiTERAMAh~~-----s~evLIVGGVGCN~RLQeMM~~Mc~eRgg~~f-aTDeRfCIDNG~MI 300 (336)
T KOG2708|consen 236 ETVFAMLVEITERAMAHCG-----SKEVLIVGGVGCNERLQEMMAIMCSERGGKLF-ATDERFCIDNGVMI 300 (336)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCcEEEEecccccHHHHHHHHHHHHhcCCceE-ecccceeeeCchHH
Confidence 3344445555556655533 3589999999999999999988773 22332 33667788888877
No 147
>PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors []. The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A.
Probab=89.99 E-value=22 Score=35.41 Aligned_cols=82 Identities=21% Similarity=0.155 Sum_probs=55.8
Q ss_pred EEcHHHHHHHHHHHHHHH-HHHHHHHHHhCCCCCCCCCe-EEEecCCCCcHHHHHHHHHHcCCcccccCC-CCcchhhch
Q 041815 300 VMTRARFEELNMDLFRKC-IKHVDMCLRTGKTDNSSVDD-VVIVGGSARIPKVQQLLQEFFNGKRLCKNI-NPDEAVAYG 376 (475)
Q Consensus 300 ~itr~~~~~~~~~~~~~i-~~~i~~~l~~~~~~~~~i~~-VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~-~p~~ava~G 376 (475)
.-.+.++...++..++++ +..++.++++.+ ++. +.|.||.+..-..-..|.+..+-.++..++ --|.-+|+|
T Consensus 132 ~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g-----~~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~aiG 206 (360)
T PF02543_consen 132 TQRHADLAASAQKVLEEIVLHLVRHLLERTG-----IDNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAIG 206 (360)
T ss_dssp ESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHHH
Confidence 456777877777777775 456667777654 345 999999999888888888874333444444 448899999
Q ss_pred HHHHHHHHcC
Q 041815 377 AAVQAAVLSG 386 (475)
Q Consensus 377 aa~~a~~~~~ 386 (475)
||+++....+
T Consensus 207 aA~~~~~~~~ 216 (360)
T PF02543_consen 207 AALYAWHELG 216 (360)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 9999886654
No 148
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=89.67 E-value=0.34 Score=46.68 Aligned_cols=69 Identities=20% Similarity=0.091 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHH
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQ 380 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~ 380 (475)
+++-..+.+.+.|++.....+..+.+ -.++.+||.+ |.+...+.+.++-..+..+..|.-+.|.|+++-
T Consensus 216 i~~~~~~~m~~~i~~~~~~~g~~~~~-~~lv~~GG~g--~~~~~~la~~lg~~~v~~p~~~~v~~A~Ga~~a 284 (290)
T PF01968_consen 216 IVRIANENMADAIREVSVERGYDPRD-FPLVAFGGAG--PLHAPELAEELGIPRVVPPHYAGVANAIGAAVA 284 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--EEE-E--------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccc-cccccccccc--ccccccccccccccccccccccccccccccccc
Confidence 33344445555555554433443322 2345556665 688888888884335656656788889998863
No 149
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=89.23 E-value=0.15 Score=34.29 Aligned_cols=33 Identities=30% Similarity=0.720 Sum_probs=26.4
Q ss_pred cccccccccCCCCCC--ceeecccCCCCCCcCCCC
Q 041815 441 KTLSKCNGCKRPAFG--LMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 441 ~~~~~c~~c~~~~~~--~~~~~~~~~~~~~~~~~~ 473 (475)
..+-.|+.|++.=.+ ..|+|..|++-.|..|+-
T Consensus 9 ~~~~~C~~C~~~i~~~~~~~~C~~C~~~~H~~C~~ 43 (49)
T smart00109 9 KKPTKCCVCRKSIWGSFQGLRCSWCKVKCHKKCAE 43 (49)
T ss_pred CCCCCccccccccCcCCCCcCCCCCCchHHHHHHh
Confidence 345689999887433 489999999999999974
No 150
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=89.05 E-value=17 Score=35.28 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=49.9
Q ss_pred CCCeEEEEe-CCCCCHHHHHH--HHHHHHHcCCceeeeeechHHHHHHhhhccC-CCCCceEEEEEeCCCceEEEEEEEe
Q 041815 142 PVSNAVVTV-PAYFTDSQRQA--TKDAGAMAGLNVLKIISEPTAAAIAYGLDRK-ATSEKNVLIFDLGGGTFDVSLLTIE 217 (475)
Q Consensus 142 ~~~~~vitV-P~~~~~~~r~~--l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~-~~~~~~vlvvD~Gggt~dvsv~~~~ 217 (475)
++..+.+|. |.+|+--..-. -+..+...+.+. .-++.-+|.|+...+... ...+--++++| ||++.+..++-
T Consensus 69 did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~a~~~s~~~~~~~l~l~vs--GG~t~l~~~~~- 144 (305)
T TIGR00329 69 EIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIYAPRLDTNILQFPFVSLLVS--GGHTQIIAVKG- 144 (305)
T ss_pred HCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHHHhhhhcCCCCCCcEEEEEc--CCceEEEEEeC-
Confidence 456677777 87777643221 233333445544 455666665544333322 11133444444 56777665553
Q ss_pred CCeEEEEEEcCCCCCchhHHHHH
Q 041815 218 KGIFKVKATAGDTHLGGEDFDNR 240 (475)
Q Consensus 218 ~~~~~v~~~~~~~~~GG~~id~~ 240 (475)
.+.++++.... ..--|+-||..
T Consensus 145 ~~~~~~l~~t~-d~S~GrlfD~v 166 (305)
T TIGR00329 145 IGDYEVLGETL-DDAVGEAFDKV 166 (305)
T ss_pred CCcEEEeeeec-CchhhHHHHHH
Confidence 24788887744 44556666643
No 151
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=88.76 E-value=2.8 Score=39.93 Aligned_cols=94 Identities=16% Similarity=0.160 Sum_probs=56.6
Q ss_pred EEcHHHHHHHHHH------HHHHHHHHHHHHHHhCCCCCCCCCeEEEecC--CCCcH-HHHHHHHHHcCCcccccCCCCc
Q 041815 300 VMTRARFEELNMD------LFRKCIKHVDMCLRTGKTDNSSVDDVVIVGG--SARIP-KVQQLLQEFFNGKRLCKNINPD 370 (475)
Q Consensus 300 ~itr~~~~~~~~~------~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG--~s~~p-~v~~~l~~~~~~~~v~~~~~p~ 370 (475)
..+++||.+.... -++.+...+...+..........+.|+|+|- +++.| .+++.|++.+ ..++..- ..
T Consensus 222 ~~~~eE~~~~~~~~e~~~lA~dal~~~vameIasLl~l~~~~~~IvLSGs~g~~r~~~~v~~~I~~~L-~~~V~~L-~~- 298 (326)
T TIGR03281 222 ENAKEEILNNYNGDEPGRLALDSLAMSVAMEIASLGLLDCKEAGVVLAGSGGTLREPINFSGKIKRVL-SCKVLVL-DS- 298 (326)
T ss_pred cCCHHHHHHHhccChhHHHHHHHHHHHHHHHHHhheeccCCCCcEEEeCcchhccCchHHHHHHHHHh-CCCeEEe-cc-
Confidence 4466666654422 2333333333333332211123458999987 89999 9999999999 4555443 33
Q ss_pred chhhchHHHHHHHHcCCCCCcccceEEEec
Q 041815 371 EAVAYGAAVQAAVLSGNRSDKVEDIVILDV 400 (475)
Q Consensus 371 ~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~ 400 (475)
+..|.|+|+.|.-+.+. .++++=++|
T Consensus 299 ksAA~G~AiIA~dI~gG----k~~iLGi~v 324 (326)
T TIGR03281 299 ESAAIGLALIAEDIFSG----KREILGIDV 324 (326)
T ss_pred hhhhhhHHHHHHHHhCC----cceEeeeee
Confidence 77899999999766553 355544443
No 152
>COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones]
Probab=88.59 E-value=33 Score=35.61 Aligned_cols=81 Identities=21% Similarity=0.184 Sum_probs=52.3
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHH-HHHHHHcCCcccccCC-CCcchhhchHH
Q 041815 301 MTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQ-QLLQEFFNGKRLCKNI-NPDEAVAYGAA 378 (475)
Q Consensus 301 itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~-~~l~~~~~~~~v~~~~-~p~~ava~Gaa 378 (475)
....++...++..+++++..+...+.+... .+.+.+.||.+..--.- +.+.+-+ ...+-..+ -.|.-.|+|||
T Consensus 256 ~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~-f~dlfV~Pa~gD~G~AvGAA 330 (555)
T COG2192 256 ERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGL-FEDLFVQPAMGDAGLAVGAA 330 (555)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhccc-CceeEecCCCCCcchHHHHH
Confidence 344556666666777766655555554211 57999999998765555 5555555 44444433 44788999999
Q ss_pred HHHHHHcC
Q 041815 379 VQAAVLSG 386 (475)
Q Consensus 379 ~~a~~~~~ 386 (475)
+++...-+
T Consensus 331 l~~~~~~~ 338 (555)
T COG2192 331 LAVKRELG 338 (555)
T ss_pred HHHHHHhc
Confidence 99876544
No 153
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=88.06 E-value=18 Score=36.34 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=23.2
Q ss_pred HHHHHHHHHHcCC--ceeeeeechHHHHHHhhh
Q 041815 159 RQATKDAGAMAGL--NVLKIISEPTAAAIAYGL 189 (475)
Q Consensus 159 r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~ 189 (475)
.+.+.++.+.-++ +++.++++.+++.++-.+
T Consensus 184 v~~l~e~l~~r~~pi~v~aviNDttgtlla~~y 216 (466)
T COG5026 184 VRLLQEALSARNLPIRVVAVINDTTGTLLASVY 216 (466)
T ss_pred HHHHHHHHHhcCCceEEEEEecccHHHHHHHhh
Confidence 5667777777666 578899999999887533
No 154
>PLN02920 pantothenate kinase 1
Probab=88.06 E-value=3.5 Score=40.91 Aligned_cols=49 Identities=10% Similarity=-0.099 Sum_probs=37.6
Q ss_pred CCCCeEEEecCCCCcH-HHHHHHHHHc-----CCcccccCCCCcchhhchHHHHH
Q 041815 333 SSVDDVVIVGGSARIP-KVQQLLQEFF-----NGKRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 333 ~~i~~VvLvGG~s~~p-~v~~~l~~~~-----~~~~v~~~~~p~~ava~Gaa~~a 381 (475)
..++.|+++|...|.+ ..++.|.-.. ++.+.....+....-|+||.+..
T Consensus 296 ~~ik~Ivf~G~fir~~~~tm~~ls~a~~fwS~g~~ka~FLrHeGYlGAlGAfl~~ 350 (398)
T PLN02920 296 FGLKRIFFGGFFIRGHSYTMDTISVAVHFWSKGEAKAMFLRHEGFLGALGAFMSY 350 (398)
T ss_pred cCCCEEEEEeecccCcHHHHHHHHHHHHHhccCceeEEEecCcchhHHHHHHHhc
Confidence 4588999999999998 6676444332 35577777788999999998864
No 155
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton]
Probab=87.39 E-value=7 Score=37.53 Aligned_cols=99 Identities=15% Similarity=0.134 Sum_probs=56.4
Q ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH-cCCceeeeeech-HHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeE
Q 041815 144 SNAVVTVPAYFTDSQRQATKDAGAM-AGLNVLKIISEP-TAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 144 ~~~vitVP~~~~~~~r~~l~~a~~~-agl~~~~~i~Ep-~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~ 221 (475)
....+|.|.--.++.|+-+.+..-. .+..-+.+.-.. .|.|..+....-.+..-+-+|+|-|.|-|.+-.+. .|.+
T Consensus 107 h~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipva--EgyV 184 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVA--EGYV 184 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEee--cceE
Confidence 3578999998889989888776433 222212211111 12222222221112245668999999988765544 4433
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHH
Q 041815 222 KVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 222 ~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
- .+.-.+.++.|++++.-+...+
T Consensus 185 i-gScik~iPiagrdiT~fiQ~ll 207 (415)
T KOG0678|consen 185 I-GSCIKHIPIAGRDITYFIQQLL 207 (415)
T ss_pred E-eeeeccccccCCchhHHHHHHh
Confidence 1 2223458999999986665555
No 156
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=86.97 E-value=0.27 Score=32.89 Aligned_cols=28 Identities=36% Similarity=0.858 Sum_probs=22.7
Q ss_pred cccccCCCCCCceeecccC-CCCCCcCCC
Q 041815 445 KCNGCKRPAFGLMYRCELC-NFNLHIPCM 472 (475)
Q Consensus 445 ~c~~c~~~~~~~~~~~~~~-~~~~~~~~~ 472 (475)
.||+|...-.|.+|+|-.| ||||=..|-
T Consensus 2 ~CdgC~~~~~~~RykCl~C~d~DlC~~Cf 30 (48)
T cd02343 2 SCDGCDEIAPWHRYRCLQCTDMDLCKTCF 30 (48)
T ss_pred CCCCCCCcCCCceEECCCCCCchhHHHHH
Confidence 5999998777899999987 677766663
No 157
>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]
Probab=86.46 E-value=31 Score=32.99 Aligned_cols=85 Identities=18% Similarity=0.207 Sum_probs=55.2
Q ss_pred HHHcCCceeeeeechHHHHHHhhhccCC----------CCCceEEEEEeCCCceEEEEEEEeCCeEEEE-EEcCCCCCc-
Q 041815 166 GAMAGLNVLKIISEPTAAAIAYGLDRKA----------TSEKNVLIFDLGGGTFDVSLLTIEKGIFKVK-ATAGDTHLG- 233 (475)
Q Consensus 166 ~~~agl~~~~~i~Ep~Aaa~~~~~~~~~----------~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~-~~~~~~~~G- 233 (475)
.+..|++.+.+||+=+|-|++...-... ......+|+--|-|-=-..++..+.+ +.++ ...+...++
T Consensus 91 r~~Lgl~~v~liNDF~A~A~Ai~~l~~~dl~qigg~~~~~~a~~avlGPGTGLGVa~Lv~~~~~-w~~lp~EGGHvdf~P 169 (320)
T COG0837 91 RAELGLDHLSLINDFAAQALAIPRLGAEDLEQIGGGKPEPNAPRAVLGPGTGLGVAGLVPNGGG-WIPLPGEGGHVDFAP 169 (320)
T ss_pred HHhcCCCcEEEechHHHHHhhccccCHHHHHHhcCCCCCCCCceEEEcCCCCcceEEEEecCCe-eEeccCCCccccCCC
Confidence 3456999999999999998876332111 13556777766666444555555555 4444 344555555
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 041815 234 GEDFDNRMVNHFIQEFKR 251 (475)
Q Consensus 234 G~~id~~l~~~l~~~~~~ 251 (475)
.+..+-.+++++.+++.+
T Consensus 170 ~~~~E~~i~~~l~~~~Gr 187 (320)
T COG0837 170 RSEREFQILEYLRARFGR 187 (320)
T ss_pred CCHHHHHHHHHHHHhcCc
Confidence 477888999999888653
No 158
>PRK00976 hypothetical protein; Provisional
Probab=86.14 E-value=5.9 Score=38.47 Aligned_cols=60 Identities=25% Similarity=0.378 Sum_probs=42.5
Q ss_pred CCCeEEEecCCCCcH--HHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCCCCCcccceEEEec
Q 041815 334 SVDDVVIVGGSARIP--KVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGNRSDKVEDIVILDV 400 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p--~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~~~~~~~~~~~~d~ 400 (475)
+++.|+|-||.++.+ .+.+.+++.+ ... ...-..++.++|||+.|..+.+. .++++=++|
T Consensus 263 DPe~IVLGGGVS~~~e~~L~~~I~e~l-~~~--~a~LG~dAGaiGAA~iA~~i~~G----~~~ilgi~v 324 (326)
T PRK00976 263 PEDNVVLAGSVGEMDEPDVSERIKELL-DKK--VLVLGKESAAIGLALIARDIFNG----KKDILGIEV 324 (326)
T ss_pred CCCEEEEcCccccCchhHHHHHHHHHh-ccc--ccccCCchHHHHHHHHHHHHhCC----CceeeeeEe
Confidence 478999999999998 7999999888 322 22234588999999988766442 355544443
No 159
>KOG4582 consensus Uncharacterized conserved protein, contains ZZ-type Zn-finger [General function prediction only]
Probab=85.66 E-value=0.36 Score=46.01 Aligned_cols=30 Identities=30% Similarity=0.992 Sum_probs=25.5
Q ss_pred ccccccCCCCC-CceeecccC-CCCCCcCCCC
Q 041815 444 SKCNGCKRPAF-GLMYRCELC-NFNLHIPCMF 473 (475)
Q Consensus 444 ~~c~~c~~~~~-~~~~~~~~~-~~~~~~~~~~ 473 (475)
=.||.|+.++. |.||.|..| ||||=+.|-.
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~ 184 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEA 184 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhc
Confidence 48999999555 999999998 8999888843
No 160
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=84.88 E-value=1.5 Score=47.03 Aligned_cols=43 Identities=28% Similarity=0.458 Sum_probs=29.5
Q ss_pred eeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEe
Q 041815 174 LKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIE 217 (475)
Q Consensus 174 ~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~ 217 (475)
..+.+=|.|..++...-.....+ +++++||||.|||++++.-+
T Consensus 256 ~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~~G 298 (674)
T COG0145 256 ETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALIIDG 298 (674)
T ss_pred eeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeeecC
Confidence 44667777766555444122113 69999999999999999844
No 161
>PRK03011 butyrate kinase; Provisional
Probab=84.40 E-value=4.3 Score=40.32 Aligned_cols=51 Identities=27% Similarity=0.323 Sum_probs=38.5
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcC---CcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFN---GKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~---~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
++|.|+|+||.+..+.+++.|.+.+. ...+....+-.+|.+.||+.. |.|+
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv---l~g~ 348 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV---LRGE 348 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH---HcCC
Confidence 58999999999999999998888763 334555555567999997754 4554
No 162
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=82.38 E-value=3.5 Score=44.91 Aligned_cols=49 Identities=24% Similarity=0.358 Sum_probs=37.8
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcC--CcccccCC---CCcchhhchHHHHHH
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFN--GKRLCKNI---NPDEAVAYGAAVQAA 382 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~--~~~v~~~~---~p~~ava~Gaa~~a~ 382 (475)
.++.|+|+||.+....+++.+.+.+. +.++..+. -.|.++++|.|++|+
T Consensus 658 g~~~VvLSGGVfqN~~L~~~L~~~L~~~g~~v~~p~~~p~nDgGislGQa~~a~ 711 (711)
T TIGR00143 658 GIHKIVISGGVFYNRLLLERLAKYLKGLGFQFLFHRHLPPGDGGISLGQAVAAA 711 (711)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHhCCCEEEccCCCCCCHHHHHHHHHHHhC
Confidence 46789999999999999999998773 34454443 237889999988764
No 163
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=82.23 E-value=1.4 Score=41.26 Aligned_cols=20 Identities=35% Similarity=0.496 Sum_probs=17.3
Q ss_pred CEEEEecCCccEEEEEEECC
Q 041815 8 PAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g 27 (475)
+++|||+|||++++++.+..
T Consensus 1 y~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred CEEEEEEcccceEEEEEeCC
Confidence 47999999999999998743
No 164
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=82.20 E-value=52 Score=32.14 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=49.5
Q ss_pred CCCeEEEEe-CCCCCHHHHHH---HHHHHHHcCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEe
Q 041815 142 PVSNAVVTV-PAYFTDSQRQA---TKDAGAMAGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIE 217 (475)
Q Consensus 142 ~~~~~vitV-P~~~~~~~r~~---l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~ 217 (475)
++..+++|. |..++-- |-. -+..+...+.+ +..++--+|-|++.......+.+ -++++| ||++.+...+
T Consensus 66 did~Iavt~gPg~~~~l-~vg~~~ak~la~~~~~p-~~~v~h~~aHa~sa~~~s~~~~~-lvL~vs--Gg~t~l~~~~-- 138 (322)
T TIGR03722 66 DIDAVAFSQGPGLGPCL-RVGATAARALALKLNKP-LVGVNHCVAHIEIGRLTTGAKDP-VVLYVS--GGNTQVIAYR-- 138 (322)
T ss_pred HCCEEEEecCCchHHhH-HHHHHHHHHHHHHhCCC-eechhhHHHHHHhhhccCCCCCC-eEEEEe--CCceEEEEEe--
Confidence 466677877 5555422 211 22333344544 55667777766654443333223 556666 4577766655
Q ss_pred CCeEEEEEEcCCCCCchhHHHHH
Q 041815 218 KGIFKVKATAGDTHLGGEDFDNR 240 (475)
Q Consensus 218 ~~~~~v~~~~~~~~~GG~~id~~ 240 (475)
.+.++++....+ .--|+-||..
T Consensus 139 ~~~~~~l~~t~d-~s~GrlfDav 160 (322)
T TIGR03722 139 NGRYRVFGETLD-IGLGNALDKF 160 (322)
T ss_pred CCeEEEEEEecc-ccchHHHHHH
Confidence 466888877554 4445666643
No 165
>KOG1385 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=81.24 E-value=3.1 Score=41.27 Aligned_cols=75 Identities=23% Similarity=0.350 Sum_probs=41.9
Q ss_pred eeHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHH--HHHhhhccCCC-
Q 041815 118 YAAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAA--AIAYGLDRKAT- 194 (475)
Q Consensus 118 ~~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aa--a~~~~~~~~~~- 194 (475)
..+.+-...+|+.++++.+....-.+..-.++|=.. .+|..-| .+.|++..-..
T Consensus 154 lL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~G-----------------------tdEGv~aWiTiN~Llg~L~~~ 210 (453)
T KOG1385|consen 154 LLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMDG-----------------------TDEGVYAWITINYLLGTLGAP 210 (453)
T ss_pred cCChhHHHHHHHHHHHHHhccCCccccCCceeeccC-----------------------cccceeeeeehhhhhcccCCC
Confidence 577778888888888887643222221111222110 0111111 23344333222
Q ss_pred CCceEEEEEeCCCceEEEEEE
Q 041815 195 SEKNVLIFDLGGGTFDVSLLT 215 (475)
Q Consensus 195 ~~~~vlvvD~Gggt~dvsv~~ 215 (475)
...++.|+|+|||+|.++..-
T Consensus 211 ~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 211 GHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCCceEEEEcCCceEEEEEec
Confidence 257899999999999998775
No 166
>PLN02362 hexokinase
Probab=80.79 E-value=32 Score=35.85 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeeechHHHHHHhhhc
Q 041815 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLD 190 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~~ 190 (475)
..-.+.+.+|.+.-|+ +++.++|+.++..++..+.
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~ 241 (509)
T PLN02362 205 KDVAECLQGALNRRGLDMRVAALVNDTVGTLALGHYH 241 (509)
T ss_pred chHHHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcC
Confidence 3457888888888886 6788999999987775554
No 167
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=79.91 E-value=1.8 Score=33.82 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=16.3
Q ss_pred CEEEEecCCccEEEEEEE
Q 041815 8 PAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~ 25 (475)
.++|||+|.|++++|+.+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred cEEEEccCCCeEEEEEEC
Confidence 489999999999999885
No 168
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=79.18 E-value=1.1 Score=30.40 Aligned_cols=28 Identities=25% Similarity=1.039 Sum_probs=22.4
Q ss_pred cccccCC-CCCCceeecccC-CCCCCcCCC
Q 041815 445 KCNGCKR-PAFGLMYRCELC-NFNLHIPCM 472 (475)
Q Consensus 445 ~c~~c~~-~~~~~~~~~~~~-~~~~~~~~~ 472 (475)
.|++|.. |=.|.+|+|-.| ||||=..|-
T Consensus 2 ~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf 31 (49)
T cd02345 2 SCSACRKQDISGIRFPCQVCRDYSLCLGCY 31 (49)
T ss_pred cCCCCCCCCceEeeEECCCCCCcCchHHHH
Confidence 5999998 666999999987 677766663
No 169
>PTZ00107 hexokinase; Provisional
Probab=79.16 E-value=34 Score=35.33 Aligned_cols=36 Identities=14% Similarity=0.252 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeeechHHHHHHhhhcc
Q 041815 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLDR 191 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~~~ 191 (475)
..-.+.+.+|.+.-|+ +++.++|+.+|..++..+..
T Consensus 194 ~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~ 231 (464)
T PTZ00107 194 KDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQK 231 (464)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcC
Confidence 4457788899888887 57889999999888776654
No 170
>PLN02914 hexokinase
Probab=78.93 E-value=30 Score=35.86 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEE
Q 041815 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSL 213 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv 213 (475)
..-.+.|.+|.+.-|+ +++.++|+.+|..++..+... ...+=+=+|-||=-+.+
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~----~~~iGlIlGTGtNacY~ 260 (490)
T PLN02914 205 KDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD----DVMVAVILGTGTNACYV 260 (490)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC----CceEEEEEECCeeeEEE
Confidence 3457788888887776 678899999998777655432 23333335666544333
No 171
>PF03630 Fumble: Fumble ; InterPro: IPR004567 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This family describes the type II (primarily eukaryotic) form of pantothenate kinase PanK, characterised from the fungus Emericella nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from type I PanK enzymes and shows little sequence similarity [, ].; GO: 0004594 pantothenate kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 3SMP_B 2I7N_B 2EWS_B 2I7P_C 3SMS_A 3MK6_D.
Probab=78.05 E-value=13 Score=36.63 Aligned_cols=48 Identities=21% Similarity=0.196 Sum_probs=35.5
Q ss_pred CCCeEEEecCCCCc-HHHHHHHH---HHc--CCcccccCCCCcchhhchHHHHH
Q 041815 334 SVDDVVIVGGSARI-PKVQQLLQ---EFF--NGKRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 334 ~i~~VvLvGG~s~~-p~v~~~l~---~~~--~~~~v~~~~~p~~ava~Gaa~~a 381 (475)
.++.|+++|..-+. |...+.|. +++ +..++....+...+.|+||.+..
T Consensus 287 ~~~~I~f~G~~~~~~~~~~~~l~~a~~~~s~~~~~~~fl~h~gy~galGa~l~~ 340 (341)
T PF03630_consen 287 GVKRIVFGGSFIRNNPITMRTLSYAINFWSKGELKALFLRHEGYLGALGAFLKH 340 (341)
T ss_dssp T--EEEEESGGGTSSCHHHHHHHHHHHHHTTTS-EEEEETTTTSHHHHHHHHTH
T ss_pred CCCEEEEEeccccCCHHHHHHHHHHHHHhccCCceEEEecCCchhHHHHHHHhc
Confidence 47899999999865 67788887 444 34567777799999999998753
No 172
>PRK13329 pantothenate kinase; Reviewed
Probab=77.10 E-value=65 Score=30.21 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=15.7
Q ss_pred EEEEecCCccEEEEEEE
Q 041815 9 AIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~ 25 (475)
++-||.|+|.+|.++.+
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 77899999999999987
No 173
>PLN02405 hexokinase
Probab=77.10 E-value=45 Score=34.70 Aligned_cols=53 Identities=17% Similarity=0.098 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEE
Q 041815 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVS 212 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvs 212 (475)
..-.+.+.+|.+.-|+ +++.++|+.++..++..+.. +...+=+=+|-||=-+.
T Consensus 205 ~DVv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~----~~~~iG~IlGTGtNacY 259 (497)
T PLN02405 205 QDVVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYN----PDVVAAVILGTGTNAAY 259 (497)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCC----CCceEEEEEeCCeeeEE
Confidence 3457788888888887 56889999999877766543 22333344566654333
No 174
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=76.94 E-value=0.36 Score=49.11 Aligned_cols=42 Identities=36% Similarity=0.697 Sum_probs=32.0
Q ss_pred ccceeccCcccccccccCCCCCCc---eeecccCCCCCCcCCCCC
Q 041815 433 HDLQLKNHKTLSKCNGCKRPAFGL---MYRCELCNFNLHIPCMFI 474 (475)
Q Consensus 433 h~l~~~~~~~~~~c~~c~~~~~~~---~~~~~~~~~~~~~~~~~~ 474 (475)
|.|+..--+.|-=||-|||+-.|. .-.|+.|+.+.|+.||++
T Consensus 146 H~l~vhSY~~PtFCD~CGEmL~GLvrQGlKC~gCglNyHKRCa~k 190 (888)
T KOG4236|consen 146 HTLFVHSYKAPTFCDFCGEMLFGLVRQGLKCEGCGLNYHKRCAFK 190 (888)
T ss_pred ceeeeecccCchHHHHHHHHHHHHHHccccccCCCCcHhhhhhhc
Confidence 444444334455799999997754 578999999999999986
No 175
>PRK07058 acetate kinase; Provisional
Probab=76.89 E-value=28 Score=34.84 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCC-CcHHHHHHHHHHcC
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~~~ 359 (475)
+++-.+.++...|-...... ..+|.|+++||-+ ..+.+++.|.+.+.
T Consensus 297 A~d~f~yri~k~IGa~~a~L----g~vDaiVfTGGIgEns~~vr~~i~~~l~ 344 (396)
T PRK07058 297 ALDLFALRIAGEIARLAATL----GGLDAVVFTAGIGEHQPAIRAAVCERLA 344 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHh----CCCCEEEECCccccCcHHHHHHHHhhhh
Confidence 44445555555555444443 2489999999999 99999999998774
No 176
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=76.23 E-value=2.4 Score=44.55 Aligned_cols=21 Identities=14% Similarity=0.207 Sum_probs=18.4
Q ss_pred CCEEEEecCCccEEEEEEECC
Q 041815 7 APAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g 27 (475)
..++|||+|||++++++++..
T Consensus 3 ~~~lgID~GTts~Ka~l~d~~ 23 (520)
T PRK10939 3 SYLMALDAGTGSIRAVIFDLN 23 (520)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 489999999999999998543
No 177
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.09 E-value=21 Score=33.32 Aligned_cols=67 Identities=16% Similarity=0.227 Sum_probs=43.5
Q ss_pred eeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 174 LKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 174 ~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
..+++.-.||+.....+... ...+|||+|-|.+..+++. .+.+.-+.......+.-+.|...|.++.
T Consensus 207 av~mDskfaav~gal~dpaa---~palvVd~GngHttaalvd--edRI~gv~EHHT~~Lspekled~I~rf~ 273 (342)
T COG4012 207 AVAMDSKFAAVMGALVDPAA---DPALVVDYGNGHTTAALVD--EDRIVGVYEHHTIRLSPEKLEDQIIRFV 273 (342)
T ss_pred EEEEcchhHhhhhcccCccc---CceEEEEccCCceEEEEec--CCeEEEEeecccccCCHHHHHHHHHHHH
Confidence 46677777777777766543 4899999999999888776 3344444444445565555544444443
No 178
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=75.59 E-value=21 Score=33.60 Aligned_cols=55 Identities=29% Similarity=0.454 Sum_probs=36.3
Q ss_pred CCCCeEEEecCCCCcHH----HHHHHHHHcC----CcccccCC--CCcchhhchHHHHHHHHcCC
Q 041815 333 SSVDDVVIVGGSARIPK----VQQLLQEFFN----GKRLCKNI--NPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 333 ~~i~~VvLvGG~s~~p~----v~~~l~~~~~----~~~v~~~~--~p~~ava~Gaa~~a~~~~~~ 387 (475)
...+.|+|.|=++++|. |++.|++.|. ++.+.... --....|.|||+.|.-++|.
T Consensus 272 ~~pd~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le~~~K~KeaA~GaAiiAnaiAGG 336 (374)
T COG2441 272 TYPDAIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLESRAKAKEAAEGAAIIANAIAGG 336 (374)
T ss_pred cCcceEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhhhhhhhhhhccchhhhhhhhcch
Confidence 45689999999999765 5666666663 22332211 12234689999999888774
No 179
>PRK00047 glpK glycerol kinase; Provisional
Probab=75.41 E-value=2.7 Score=43.89 Aligned_cols=20 Identities=30% Similarity=0.398 Sum_probs=17.8
Q ss_pred CCEEEEecCCccEEEEEEEC
Q 041815 7 APAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~ 26 (475)
+.++|||+|||++++++++.
T Consensus 5 ~~~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 5 KYILALDQGTTSSRAIIFDH 24 (498)
T ss_pred CEEEEEecCCCceEEEEECC
Confidence 57999999999999999853
No 180
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=75.19 E-value=3.1 Score=35.03 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=18.3
Q ss_pred CEEEEecCCccEEEEEEECC
Q 041815 8 PAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g 27 (475)
.++|||+|+..+.+|+.++.
T Consensus 2 riL~lD~G~kriGiAvsd~~ 21 (135)
T PF03652_consen 2 RILGLDYGTKRIGIAVSDPL 21 (135)
T ss_dssp EEEEEEECSSEEEEEEEETT
T ss_pred eEEEEEeCCCeEEEEEecCC
Confidence 68999999999999998766
No 181
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=74.40 E-value=2.8 Score=43.87 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=18.2
Q ss_pred CCEEEEecCCccEEEEEEECC
Q 041815 7 APAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g 27 (475)
..++|||+|||++++++++..
T Consensus 2 ~~~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 2 KYIGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred cEEEEEecCCCceEEEEECCC
Confidence 379999999999999999543
No 182
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=73.22 E-value=4.1 Score=39.59 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=18.2
Q ss_pred ceEEEEEeCCCceEEEEEEEe
Q 041815 197 KNVLIFDLGGGTFDVSLLTIE 217 (475)
Q Consensus 197 ~~vlvvD~Gggt~dvsv~~~~ 217 (475)
..++++||||.|||++++.-+
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~G 148 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIIDG 148 (318)
T ss_pred CCEEEEEcCccceeeEEecCC
Confidence 459999999999999998744
No 183
>KOG0797 consensus Actin-related protein [Cytoskeleton]
Probab=73.07 E-value=1.5 Score=44.38 Aligned_cols=69 Identities=22% Similarity=0.306 Sum_probs=47.2
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCC-----c------c---cccCCCCcchhhchHHHHHH
Q 041815 317 CIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNG-----K------R---LCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~-----~------~---v~~~~~p~~ava~Gaa~~a~ 382 (475)
|+..|..++.+ ..+..--+.|.+|||+...|++.+.|++..-+ . . .-+..||...+..|||++|-
T Consensus 510 ii~sid~~~sd-d~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIla~ 588 (618)
T KOG0797|consen 510 IISSIDSALSD-DTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAILAI 588 (618)
T ss_pred HHHhhhhhccc-hhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhhhH
Confidence 44444444433 12233467899999999999999999987631 1 1 12235899999999999987
Q ss_pred HHcC
Q 041815 383 VLSG 386 (475)
Q Consensus 383 ~~~~ 386 (475)
+-..
T Consensus 589 l~~~ 592 (618)
T KOG0797|consen 589 LDFV 592 (618)
T ss_pred HHHH
Confidence 6654
No 184
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=71.16 E-value=15 Score=25.99 Aligned_cols=30 Identities=20% Similarity=0.246 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 041815 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (475)
Q Consensus 145 ~~vitVP~~~~~~~r~~l~~a~~~agl~~~ 174 (475)
.-.++.|+.++..+|..+.+.|+..||...
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s~ 45 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKSK 45 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCce
Confidence 467889999999999999999999999653
No 185
>KOG2707 consensus Predicted metalloprotease with chaperone activity (RNAse H/HSP70 fold) [Posttranslational modification, protein turnover, chaperones]
Probab=71.15 E-value=1.1e+02 Score=30.08 Aligned_cols=221 Identities=18% Similarity=0.179 Sum_probs=117.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCC---eEEEEeCCCCCHHHHHHHHHHHHHcCC--ceeeeeechHHHHHHhhhccCCCC
Q 041815 121 EEISSMVLAKMRDIAEDYVGSPVS---NAVVTVPAYFTDSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLDRKATS 195 (475)
Q Consensus 121 ~~l~~~~L~~l~~~a~~~~~~~~~---~~vitVP~~~~~~~r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~~~~~~~ 195 (475)
++.=..-+..+.+.+-...+..+. -+.+|+=+...-.-+--+.-|-..|+- +.+.-|.--+|-|+...+..+. .
T Consensus 79 ~~~Hr~ni~~~iqral~aa~~~p~dldaIAVT~gPGl~lsL~vGl~fA~glA~~l~kPlipVHHMeAHAL~~rl~~~~-v 157 (405)
T KOG2707|consen 79 QLLHRENIPRLIQRALDAAGLSPKDLDAIAVTRGPGLPLSLKVGLSFAKGLAVKLQKPLIPVHHMEAHALSIRLVDDS-V 157 (405)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccceeEEEecCCCceeehhhhHHHHHHHHHhccCCccchhHHHHhHHHHHhccCC-c
Confidence 334445556666666555554433 456776556555545555555544432 3445566778888887766542 2
Q ss_pred CceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHHHHH
Q 041815 196 EKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTEKDISGSPRAVQRLRKDCERAK 275 (475)
Q Consensus 196 ~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~e~~K 275 (475)
...++.+=+-||.+-+.+.+ +-+.++.+...-+... |+.||..- ++| +. ..++..... .+++-
T Consensus 158 ~FPFl~lLvSGGH~llvla~-~~~~~~llg~TvDiAp-Ge~lDK~a-r~L--------gl--~~~~e~~~~----~g~ai 220 (405)
T KOG2707|consen 158 RFPFLALLVSGGHTLLVLAN-GVGDHELLGQTVDIAP-GEALDKCA-RRL--------GL--LGHPEDARS----GGKAI 220 (405)
T ss_pred CCceeeEeeeCCceEEEEec-cccceeeeecccccch-HHHHHHHH-HHh--------cC--CCCccchhh----hhhHH
Confidence 66777777888887765544 3456777777765444 57776442 222 11 111111111 11222
Q ss_pred HHhcCCcee--EEEEeccccC---ccce--------------------EEEcHHHHHH-HHHHHHHHHHHHHHHHHHhCC
Q 041815 276 RILSSTSQT--TIEIDSLYEG---IDFS--------------------SVMTRARFEE-LNMDLFRKCIKHVDMCLRTGK 329 (475)
Q Consensus 276 ~~ls~~~~~--~~~i~~~~~~---~~~~--------------------~~itr~~~~~-~~~~~~~~i~~~i~~~l~~~~ 329 (475)
+.+-...+. .+.+|..... -+++ ....+.+|.. +-...+.-|.+....+++...
T Consensus 221 e~la~~~s~~~~l~~piPL~~~~~~nFSFsglk~~~~~~i~k~~k~e~~~s~~~dfaa~lQ~tv~~Hi~~Kt~~ai~~~~ 300 (405)
T KOG2707|consen 221 EHLANRASADLHLKFPIPLKNVKKCNFSFSGLKTSYRRIIEKLEKNEETLSEIADFAASLQRTVFRHISSKTHRAIKSLL 300 (405)
T ss_pred HHHHhccCccccccCCCCccccccCCccHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 222111111 1111111110 0110 1112222321 223344556666677777766
Q ss_pred CCCCCCCeEEEecCCCCcHHHHHHHHHHcC
Q 041815 330 TDNSSVDDVVIVGGSARIPKVQQLLQEFFN 359 (475)
Q Consensus 330 ~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~ 359 (475)
+..+.+...|..||-++..+|+.+|+....
T Consensus 301 l~~~~~~~lV~SGGVAsN~yir~~le~l~~ 330 (405)
T KOG2707|consen 301 LQPKNVKQLVISGGVASNQYIRGALEKLSA 330 (405)
T ss_pred hcccCCceEEEcCCccchHHHHHHHHHHHH
Confidence 777778899999999999999999998763
No 186
>PLN02596 hexokinase-like
Probab=70.98 E-value=68 Score=33.34 Aligned_cols=55 Identities=18% Similarity=0.157 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCC--ceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEE
Q 041815 156 DSQRQATKDAGAMAGL--NVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLL 214 (475)
Q Consensus 156 ~~~r~~l~~a~~~agl--~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~ 214 (475)
..-.+.+.+|.+..|+ +++.++|+.++..++..+... ...+=+=+|-||=-..+-
T Consensus 205 ~Dvv~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~----~~~iG~I~GTGtNacY~E 261 (490)
T PLN02596 205 KALVNDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK----DTVAAVTLGMGTNAAYVE 261 (490)
T ss_pred cHHHHHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC----CeEEEEEEecccceEEEE
Confidence 3445667888877776 678899999998877766532 233323366665444333
No 187
>PRK04123 ribulokinase; Provisional
Probab=70.47 E-value=4.3 Score=42.99 Aligned_cols=19 Identities=32% Similarity=0.340 Sum_probs=17.7
Q ss_pred CCEEEEecCCccEEEEEEE
Q 041815 7 APAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~ 25 (475)
..++|||+|||++++++++
T Consensus 3 ~~~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 3 AYVIGLDFGTDSVRALLVD 21 (548)
T ss_pred cEEEEEecCCCceEEEEEE
Confidence 5799999999999999997
No 188
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=70.13 E-value=52 Score=30.81 Aligned_cols=38 Identities=21% Similarity=0.230 Sum_probs=27.2
Q ss_pred cCCceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCC
Q 041815 169 AGLNVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGG 207 (475)
Q Consensus 169 agl~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Ggg 207 (475)
.+++ +.+.++..|+|++..........+.++.+-+|.|
T Consensus 96 ~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG 133 (256)
T PRK13311 96 IQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG 133 (256)
T ss_pred HCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC
Confidence 3655 6799999999988766544333577888888865
No 189
>PRK10331 L-fuculokinase; Provisional
Probab=69.87 E-value=4.4 Score=41.99 Aligned_cols=20 Identities=15% Similarity=0.041 Sum_probs=17.6
Q ss_pred CCEEEEecCCccEEEEEEEC
Q 041815 7 APAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~ 26 (475)
..++|||+|||++++++++.
T Consensus 2 ~~~lgID~GTt~~Ka~l~d~ 21 (470)
T PRK10331 2 DVILVLDCGATNVRAIAVDR 21 (470)
T ss_pred ceEEEEecCCCceEEEEEcC
Confidence 37899999999999999853
No 190
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=68.90 E-value=1.5e+02 Score=30.66 Aligned_cols=59 Identities=12% Similarity=0.178 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHHcCCc---eeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEEEe
Q 041815 155 TDSQRQATKDAGAMAGLN---VLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLTIE 217 (475)
Q Consensus 155 ~~~~r~~l~~a~~~agl~---~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~~~ 217 (475)
...-.+.+.+|.+.-|+. ++.++++.++..++..+.. +++++=+=+|.||--.-+.+..
T Consensus 190 g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~----~~~~igvI~GTGtNacY~e~~~ 251 (474)
T KOG1369|consen 190 GEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED----PNCEIGVIFGTGTNACYMEDMR 251 (474)
T ss_pred cchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC----CCcEEEEEECCCccceeeeecc
Confidence 345578899999999885 6788999999877766554 4566667788887665555544
No 191
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=68.38 E-value=23 Score=33.94 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=32.4
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCC------cccccCCCCcchhhchHHHHH
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNG------KRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~------~~v~~~~~p~~ava~Gaa~~a 381 (475)
+++.|+|.|+.+..+.+.+.+++.+.. .++....-.+.+.++|||.++
T Consensus 233 dpe~IvlgG~~~~~~~~~~~i~~~l~~~~~~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 233 DCQCVVLGGSVGLAEGYLELVQAYLAQEPAIYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred CCCEEEEcCccccHHHHHHHHHHHHHhcccccCCeEEECccCCchhhhhHHHHh
Confidence 467999988887776666667665532 223344455778889999875
No 192
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=68.29 E-value=6.4 Score=33.25 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=18.8
Q ss_pred CCCEEEEecCCccEEEEEEECC
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g 27 (475)
++.++|||+|+..+.+|+.++.
T Consensus 3 ~~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 3 SGRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CCcEEEEEeCCCEEEEEEecCC
Confidence 4569999999999999988653
No 193
>PF13832 zf-HC5HC2H_2: PHD-zinc-finger like domain
Probab=67.81 E-value=2.6 Score=33.93 Aligned_cols=33 Identities=24% Similarity=0.535 Sum_probs=28.4
Q ss_pred cccccccccCCCCCCceeeccc--CCCCCCcCCCCC
Q 041815 441 KTLSKCNGCKRPAFGLMYRCEL--CNFNLHIPCMFI 474 (475)
Q Consensus 441 ~~~~~c~~c~~~~~~~~~~~~~--~~~~~~~~~~~~ 474 (475)
+...+|..|+.. .|-...|.. |+--+|+.||.+
T Consensus 53 ~~~~~C~iC~~~-~G~~i~C~~~~C~~~fH~~CA~~ 87 (110)
T PF13832_consen 53 RFKLKCSICGKS-GGACIKCSHPGCSTAFHPTCARK 87 (110)
T ss_pred hcCCcCcCCCCC-CceeEEcCCCCCCcCCCHHHHHH
Confidence 345799999999 667899996 999999999974
No 194
>PRK15027 xylulokinase; Provisional
Probab=67.58 E-value=4.9 Score=41.85 Aligned_cols=19 Identities=42% Similarity=0.398 Sum_probs=16.8
Q ss_pred CEEEEecCCccEEEEEEEC
Q 041815 8 PAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~ 26 (475)
.++|||+|||++++++++.
T Consensus 1 ~~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 1 MYIGIDLGTSGVKVILLNE 19 (484)
T ss_pred CEEEEEecccceEEEEEcC
Confidence 4799999999999999864
No 195
>PRK13331 pantothenate kinase; Reviewed
Probab=67.11 E-value=8.2 Score=36.20 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCCCCCCCEEEEecCCccEEEEEEECCc
Q 041815 1 MDGKEAAPAIGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 1 M~~~~~~~vvGIDlGTt~s~va~~~~g~ 28 (475)
|...+.+.++.||+|+|+++++++++++
T Consensus 1 ~~~~~~~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 1 MMFHTSNEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CCCCCCCcEEEEEeCCCcEEEEEEECCE
Confidence 4456678899999999999999998654
No 196
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=66.08 E-value=5.5 Score=41.72 Aligned_cols=20 Identities=30% Similarity=0.539 Sum_probs=17.2
Q ss_pred CEEEEecCCccEEEEEEECC
Q 041815 8 PAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g 27 (475)
+++|||+|||++++++.+.+
T Consensus 1 ~~lgiDiGtt~~K~~l~d~~ 20 (505)
T TIGR01314 1 YMIGVDIGTTSTKAVLFEEN 20 (505)
T ss_pred CEEEEeccccceEEEEEcCC
Confidence 47999999999999998543
No 197
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=65.84 E-value=5.5 Score=41.20 Aligned_cols=20 Identities=15% Similarity=0.052 Sum_probs=17.5
Q ss_pred CEEEEecCCccEEEEEEECC
Q 041815 8 PAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g 27 (475)
.++|||+|||++++++.+..
T Consensus 2 ~ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 2 VILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred eEEEEecCCCcEEEEEEcCC
Confidence 58999999999999999643
No 198
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=65.65 E-value=6.2 Score=41.66 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=17.0
Q ss_pred CEEEEecCCccEEEEEEE
Q 041815 8 PAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~ 25 (475)
.++|||+|||++++++++
T Consensus 2 ~~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 2 YAIGVDFGTLSGRALAVD 19 (536)
T ss_pred eEEEEecCCCceEEEEEE
Confidence 589999999999999998
No 199
>PLN02295 glycerol kinase
Probab=65.24 E-value=5.9 Score=41.56 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=16.8
Q ss_pred CEEEEecCCccEEEEEEEC
Q 041815 8 PAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~ 26 (475)
.++|||+|||++++++++.
T Consensus 1 ~vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 1 FVGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred CEEEEecCCCceEEEEECC
Confidence 4799999999999999853
No 200
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=65.07 E-value=5.9 Score=41.36 Aligned_cols=19 Identities=37% Similarity=0.357 Sum_probs=17.1
Q ss_pred CEEEEecCCccEEEEEEEC
Q 041815 8 PAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~ 26 (475)
.++|||+|||++++++++.
T Consensus 2 ~~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 2 YILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred eEEEEecCCCceEEEEECC
Confidence 6899999999999999853
No 201
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=63.92 E-value=7.6 Score=32.85 Aligned_cols=21 Identities=24% Similarity=0.200 Sum_probs=18.6
Q ss_pred CCEEEEecCCccEEEEEEECC
Q 041815 7 APAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g 27 (475)
+.++|||+||-.+.+|+.+..
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~ 22 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDIL 22 (141)
T ss_pred ceEEEEecCCceEEEEEecCC
Confidence 579999999999999998655
No 202
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=62.96 E-value=28 Score=24.61 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=26.7
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 041815 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (475)
Q Consensus 145 ~~vitVP~~~~~~~r~~l~~a~~~agl~~~ 174 (475)
.-.++.|+.++..+|..+-+.|+..||...
T Consensus 17 ~~~l~f~p~lt~~eR~~vH~~a~~~gL~s~ 46 (60)
T cd02640 17 IRDMVFSPEFSKEERALIHQIAQKYGLKSR 46 (60)
T ss_pred cceEEcCCCCCHHHHHHHHHHHHHcCCcee
Confidence 467889999999999999999999999753
No 203
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=61.98 E-value=7.2 Score=41.24 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=16.3
Q ss_pred EEEEecCCccEEEEEEEC
Q 041815 9 AIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~ 26 (475)
++|||+|||++++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (541)
T TIGR01315 2 YIGVDVGTGSARACIIDS 19 (541)
T ss_pred EEEEEecCcCEEEEEEcC
Confidence 689999999999999953
No 204
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=61.48 E-value=12 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=0.0
Q ss_pred CEEEEecCCccEEEEEE--ECCcEEEE
Q 041815 8 PAIGIDLGTTYSCVGVW--QHDRVEII 32 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~--~~g~~~vi 32 (475)
.|+|||.|++++..|+. .++.+.++
T Consensus 1 rILGIDPGl~~~G~av~~~~~~~~~~~ 27 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGRKLIYL 27 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCCeEEEE
No 205
>PF13771 zf-HC5HC2H: PHD-like zinc-binding domain
Probab=60.87 E-value=3.8 Score=31.55 Aligned_cols=30 Identities=33% Similarity=0.722 Sum_probs=24.5
Q ss_pred ccccccCCCCCCceeecc--cCCCCCCcCCCCC
Q 041815 444 SKCNGCKRPAFGLMYRCE--LCNFNLHIPCMFI 474 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~--~~~~~~~~~~~~~ 474 (475)
-+|..|+.+ .|-...|. .|.-..|+.||++
T Consensus 37 ~~C~~C~~~-~Ga~i~C~~~~C~~~fH~~CA~~ 68 (90)
T PF13771_consen 37 LKCSICKKK-GGACIGCSHPGCSRSFHVPCARK 68 (90)
T ss_pred CCCcCCCCC-CCeEEEEeCCCCCcEEChHHHcc
Confidence 499999999 33556666 6999999999985
No 206
>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]
Probab=60.55 E-value=4.3 Score=42.30 Aligned_cols=42 Identities=24% Similarity=0.586 Sum_probs=35.5
Q ss_pred cccceeccCcccccccccCCCCCCceeecccCCCCCCcCCCC
Q 041815 432 AHDLQLKNHKTLSKCNGCKRPAFGLMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 432 ~h~l~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~ 473 (475)
-|.+..|....+--||.|..+=.-..++|..|.|-.|..|+=
T Consensus 178 ~H~~~rktf~~~~fC~~~~~~~l~~gfrC~~C~~KfHq~Cs~ 219 (678)
T KOG0193|consen 178 THNFVRKTFFPLAFCDSCCNKFLFTGFRCQTCGYKFHQSCSP 219 (678)
T ss_pred ceeeeeccccchhhhhhhcchhhhcccccCCCCCccccccCC
Confidence 456777777777889988888888889999999999999974
No 207
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=60.32 E-value=23 Score=32.16 Aligned_cols=28 Identities=25% Similarity=0.541 Sum_probs=23.8
Q ss_pred CceEEEEEeCCCceEEEEEEEeCC-eEEE
Q 041815 196 EKNVLIFDLGGGTFDVSLLTIEKG-IFKV 223 (475)
Q Consensus 196 ~~~vlvvD~Gggt~dvsv~~~~~~-~~~v 223 (475)
...++++|+||.++-+.++++.+. .++.
T Consensus 62 ~G~~LalDlGGTnlRv~~V~L~g~~~~~~ 90 (206)
T PF00349_consen 62 KGDFLALDLGGTNLRVALVELSGNGKVEI 90 (206)
T ss_dssp EEEEEEEEESSSSEEEEEEEEESSSEEEE
T ss_pred CceEEEEeecCcEEEEEEEEEcCCCCcee
Confidence 568999999999999999999876 3443
No 208
>PLN02669 xylulokinase
Probab=59.82 E-value=9 Score=40.65 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=18.8
Q ss_pred CCCEEEEecCCccEEEEEEECC
Q 041815 6 AAPAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~g 27 (475)
...+||||+||+.+++++.+..
T Consensus 7 ~~~~LGiD~GT~s~Ka~l~d~~ 28 (556)
T PLN02669 7 DSLFLGFDSSTQSLKATVLDSN 28 (556)
T ss_pred CCeEEEEecccCCeEEEEEcCC
Confidence 4679999999999999998533
No 209
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=59.39 E-value=7.6 Score=26.13 Aligned_cols=28 Identities=32% Similarity=0.650 Sum_probs=23.3
Q ss_pred ccccCCCC-CCceeecccCCCCCCcCCCC
Q 041815 446 CNGCKRPA-FGLMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 446 c~~c~~~~-~~~~~~~~~~~~~~~~~~~~ 473 (475)
|..|+..+ .+.+..|+.|+--.|..|.-
T Consensus 2 C~vC~~~~~~~~~i~C~~C~~~~H~~C~~ 30 (51)
T PF00628_consen 2 CPVCGQSDDDGDMIQCDSCNRWYHQECVG 30 (51)
T ss_dssp BTTTTSSCTTSSEEEBSTTSCEEETTTST
T ss_pred CcCCCCcCCCCCeEEcCCCChhhCcccCC
Confidence 66777754 48999999999999999963
No 210
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=57.79 E-value=25 Score=32.88 Aligned_cols=73 Identities=22% Similarity=0.316 Sum_probs=47.3
Q ss_pred eEEEEEeCCCceEEEEEEEeCC-eE----------------------EEEEEcCCCCCchhHHHHHHHHHHHHHHHhhcc
Q 041815 198 NVLIFDLGGGTFDVSLLTIEKG-IF----------------------KVKATAGDTHLGGEDFDNRMVNHFIQEFKRKTE 254 (475)
Q Consensus 198 ~vlvvD~Gggt~dvsv~~~~~~-~~----------------------~v~~~~~~~~~GG~~id~~l~~~l~~~~~~~~~ 254 (475)
+++++|+|.||.|+-.+.-... .+ .-+...+ ...||.-.+.++.++|..-+
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~G~----- 75 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKKGT----- 75 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhcCC-----
Confidence 5799999999999977754210 00 0122233 57889999999988885422
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHH
Q 041815 255 KDISGSPRAVQRLRKDCERAKRI 277 (475)
Q Consensus 255 ~~~~~~~~~~~~l~~~~e~~K~~ 277 (475)
.+-...++...+.+..|+.++.
T Consensus 76 -rVyatedAAlT~hddleRv~em 97 (342)
T COG4012 76 -RVYATEDAALTLHDDLERVEEM 97 (342)
T ss_pred -eeEechhhhhhhhcCHHHHHhh
Confidence 3445566666666677777654
No 211
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=56.50 E-value=1.8e+02 Score=27.52 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHc
Q 041815 314 FRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFF 358 (475)
Q Consensus 314 ~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~ 358 (475)
++.+...+..+++. ..+..++++||-+...++|+.+++..
T Consensus 206 ~~~l~~~~~~a~~~-----~~~~~lv~~GGVaaN~~lr~~l~~~~ 245 (268)
T PF00814_consen 206 ADHLAKKAPRALEK-----PRAKSLVVSGGVAANKYLREGLRKLC 245 (268)
T ss_dssp HHHHHHHHHHHHHH-----HTCSEEEEESGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-----hcccccchHHHHHHHHHHHHHHHHHH
Confidence 44444555555555 34679999999999999999998764
No 213
>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]
Probab=56.32 E-value=1.9e+02 Score=27.80 Aligned_cols=66 Identities=17% Similarity=0.163 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCc-HHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcC
Q 041815 313 LFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARI-PKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSG 386 (475)
Q Consensus 313 ~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~-p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~ 386 (475)
++++....+...++... -......+.|.||.... +...+.+.+.... +|+--+..||.+.|.....
T Consensus 228 Il~~aa~~i~~~~~~l~-~~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~-------~~~~D~~~GA~~~A~~~~~ 294 (301)
T COG2971 228 ILKEAAAYIATLLEALS-IFNGSEKLSLLGGLAPSYPYYLSLFRRALLV-------PPIGDALSGAVLLALGRFG 294 (301)
T ss_pred HHHHHHHHHHHHHHHHh-cccCCceEEEeccccccchhhHHHHHHHhcC-------CccccHHHHHHHHHHHhhh
Confidence 44444455555555432 12335689999999877 8888887777632 2255567888888865544
No 214
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=56.25 E-value=10 Score=33.06 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=17.2
Q ss_pred CCEEEEecCCccEEEEEEE
Q 041815 7 APAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~ 25 (475)
+.++|||-|++++..|+.+
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 5799999999999999875
No 215
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=55.71 E-value=4.8 Score=27.87 Aligned_cols=30 Identities=20% Similarity=0.656 Sum_probs=23.9
Q ss_pred ccCcccccccccCCCCC---CceeecccCCCCC
Q 041815 438 KNHKTLSKCNGCKRPAF---GLMYRCELCNFNL 467 (475)
Q Consensus 438 ~~~~~~~~c~~c~~~~~---~~~~~~~~~~~~~ 467 (475)
+.....|.|--|+..-. +.-++|.+|.|.|
T Consensus 15 r~~~miYiCgdC~~en~lk~~D~irCReCG~RI 47 (62)
T KOG3507|consen 15 RTATMIYICGDCGQENTLKRGDVIRCRECGYRI 47 (62)
T ss_pred CcccEEEEeccccccccccCCCcEehhhcchHH
Confidence 33445599999988754 8999999999876
No 216
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A.
Probab=54.35 E-value=6.3 Score=21.79 Aligned_cols=9 Identities=33% Similarity=1.405 Sum_probs=5.8
Q ss_pred eecccCCCC
Q 041815 458 YRCELCNFN 466 (475)
Q Consensus 458 ~~~~~~~~~ 466 (475)
|.|..|+|.
T Consensus 1 y~C~~C~y~ 9 (24)
T PF13909_consen 1 YKCPHCSYS 9 (24)
T ss_dssp EE-SSSS-E
T ss_pred CCCCCCCCc
Confidence 789999984
No 217
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=51.14 E-value=46 Score=32.98 Aligned_cols=46 Identities=24% Similarity=0.150 Sum_probs=31.7
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCc-cccc--CCCCcchhhchHHH
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGK-RLCK--NINPDEAVAYGAAV 379 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~-~v~~--~~~p~~ava~Gaa~ 379 (475)
+++.|+|.||.+..+.+.+.|.+.+.-. +|.. ..+--+|.|.||..
T Consensus 293 ~pD~IV~gGGI~e~~~l~~~I~~~l~~~a~v~~~pg~~e~~ala~ga~r 341 (351)
T TIGR02707 293 KVDAIVLTGGLAYSKYFVSEIIKRVSFIAPVLVYPGEDEMEALAEGALR 341 (351)
T ss_pred CCCEEEEcchhhcCHHHHHHHHHHHHhhCCEEEeCCcHHHHHHHHhHHH
Confidence 4789999999999999999999887422 2222 22334566667654
No 218
>PRK13318 pantothenate kinase; Reviewed
Probab=51.01 E-value=17 Score=34.22 Aligned_cols=20 Identities=25% Similarity=0.634 Sum_probs=17.6
Q ss_pred EEEEecCCccEEEEEEECCc
Q 041815 9 AIGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~ 28 (475)
+++||+|.|++++++.+++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 68999999999999998553
No 219
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=49.68 E-value=12 Score=22.82 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=16.0
Q ss_pred ccccccCCC---CCCceeecccCCCCC
Q 041815 444 SKCNGCKRP---AFGLMYRCELCNFNL 467 (475)
Q Consensus 444 ~~c~~c~~~---~~~~~~~~~~~~~~~ 467 (475)
|.|--|+.. ..+...+|..|.+.|
T Consensus 1 Y~C~~Cg~~~~~~~~~~irC~~CG~RI 27 (32)
T PF03604_consen 1 YICGECGAEVELKPGDPIRCPECGHRI 27 (32)
T ss_dssp EBESSSSSSE-BSTSSTSSBSSSS-SE
T ss_pred CCCCcCCCeeEcCCCCcEECCcCCCeE
Confidence 566677665 346667999998865
No 220
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=49.03 E-value=46 Score=33.74 Aligned_cols=47 Identities=19% Similarity=0.248 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQL 353 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~ 353 (475)
+++-+.+++.+.+++.+.+++++...++|..++++|-.+....+...
T Consensus 56 ~~L~~~i~~~i~~li~~l~~~~gi~~~~I~~i~i~GNt~M~hLllGl 102 (412)
T PF14574_consen 56 EELQRLIRETINELIEELLEKAGISPEDIYEIVIVGNTTMLHLLLGL 102 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT--GGGEEEEEEEE-HHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHeEEEEEEecHHHHHHHcCC
Confidence 44455566777888888999999999999999999987766665543
No 221
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=48.93 E-value=47 Score=23.19 Aligned_cols=40 Identities=13% Similarity=0.266 Sum_probs=28.8
Q ss_pred HHHHHHhhcCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCce
Q 041815 131 MRDIAEDYVGSPVSNAVVTVPAYFTDSQRQATKDAGAMAGLNV 173 (475)
Q Consensus 131 l~~~a~~~~~~~~~~~vitVP~~~~~~~r~~l~~a~~~agl~~ 173 (475)
+++..+.++... .-.++.|+ .+..+|..+.+.|+..||..
T Consensus 4 i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 4 IKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 333444444333 34678898 89999999999999999864
No 222
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=48.83 E-value=40 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.298 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 041815 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (475)
Q Consensus 145 ~~vitVP~~~~~~~r~~l~~a~~~agl~~~ 174 (475)
.-.++.|+.+++.+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 445677999999999999999999999654
No 223
>PRK13326 pantothenate kinase; Reviewed
Probab=48.07 E-value=23 Score=33.52 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=20.7
Q ss_pred CCCCCEEEEecCCccEEEEEEECCc
Q 041815 4 KEAAPAIGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 4 ~~~~~vvGIDlGTt~s~va~~~~g~ 28 (475)
+....++.||+|+|+++++++++++
T Consensus 3 ~~~~~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 3 KVLSSQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred ccccEEEEEEeCCCeEEEEEEECCE
Confidence 3346789999999999999998764
No 224
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=46.19 E-value=96 Score=31.79 Aligned_cols=47 Identities=13% Similarity=0.160 Sum_probs=30.0
Q ss_pred EEeCCCceEEEEEEEeCCeEEEEEEcCC-CCCchhHHHHHHHHHHHHHHH
Q 041815 202 FDLGGGTFDVSLLTIEKGIFKVKATAGD-THLGGEDFDNRMVNHFIQEFK 250 (475)
Q Consensus 202 vD~Gggt~dvsv~~~~~~~~~v~~~~~~-~~~GG~~id~~l~~~l~~~~~ 250 (475)
+|+|+.+|-++.+...++.+...+.... ... .|+..-|++...++++
T Consensus 1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tpTt~--~dv~~G~~~~a~~~l~ 48 (463)
T TIGR01319 1 LDFGSTWTKAAAFDIEGDAILATAHDITPIES--DHLAGGFFNKANEKLN 48 (463)
T ss_pred CCccccceEEEEEecCCCcEEEEEeccCccch--hhhhcchHHHHHHHHH
Confidence 5999999999999888776666665544 222 3555553333334443
No 225
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=46.12 E-value=2.3e+02 Score=28.39 Aligned_cols=16 Identities=6% Similarity=0.468 Sum_probs=12.5
Q ss_pred hHHHHHHHHHHHHHHH
Q 041815 235 EDFDNRMVNHFIQEFK 250 (475)
Q Consensus 235 ~~id~~l~~~l~~~~~ 250 (475)
+.+|+.|.+.|.+++.
T Consensus 13 D~iD~~iv~Ll~~R~~ 28 (374)
T PRK11199 13 DEVDKQLLELLAKRLE 28 (374)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999877643
No 226
>PRK00180 acetate kinase A/propionate kinase 2; Reviewed
Probab=45.71 E-value=67 Score=32.43 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCC-CcHHHHHHHHHHcC
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~~~ 359 (475)
+++-.+.++...|-...... ...+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 301 A~d~f~yri~k~Iga~~a~L---~g~vDaiVfTGGIgE~s~~lr~~I~~~l~ 349 (402)
T PRK00180 301 ALDVFVYRLAKYIGSYAAAL---NGRLDAIVFTAGIGENSALVREKVLEGLE 349 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHh---cCCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34444555555554444432 13489999999999 99999999998774
No 227
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=45.70 E-value=85 Score=31.76 Aligned_cols=29 Identities=34% Similarity=0.681 Sum_probs=24.1
Q ss_pred CCceEEEEEeCCCceEEEEEEEe-CCeEEE
Q 041815 195 SEKNVLIFDLGGGTFDVSLLTIE-KGIFKV 223 (475)
Q Consensus 195 ~~~~vlvvD~Gggt~dvsv~~~~-~~~~~v 223 (475)
+...+|++|+||..+-++++++. .+.++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~ 102 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDI 102 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCccc
Confidence 47889999999999999999998 444443
No 228
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=45.33 E-value=34 Score=29.24 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=16.9
Q ss_pred EEEEecCCccEEEEEEE--CCcEEEE
Q 041815 9 AIGIDLGTTYSCVGVWQ--HDRVEII 32 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~--~g~~~vi 32 (475)
|+|||-|++++..|+.+ ++.++.+
T Consensus 1 ILGIDPgl~~tG~avi~~~~~~~~~i 26 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGGKLRLI 26 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETTEEEEE
T ss_pred CEEECCCCCCeeEEEEEeeCCEEEEE
Confidence 68999999999999884 4445544
No 229
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=45.28 E-value=59 Score=30.90 Aligned_cols=69 Identities=20% Similarity=0.237 Sum_probs=48.4
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHH-HcCCcccccCCCCcchh
Q 041815 300 VMTRARFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQE-FFNGKRLCKNINPDEAV 373 (475)
Q Consensus 300 ~itr~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~-~~~~~~v~~~~~p~~av 373 (475)
.++.++|++.+-|.+.+|.+.+++-|.+.++.. +--|+..-|+. +.-+.+.+ -+.-+.+..+.+|.+|+
T Consensus 219 eLspe~f~e~s~PYl~~I~~~Vk~rl~~~~~~~--vPmi~fakG~g---~~Le~l~~tG~DVvgLDWTvdp~ear 288 (359)
T KOG2872|consen 219 ELSPEDFEEFSLPYLRQIAEAVKKRLPELGLAP--VPMILFAKGSG---GALEELAQTGYDVVGLDWTVDPAEAR 288 (359)
T ss_pred cCCHHHHHHhhhHHHHHHHHHHHHhhhhhcCCC--CceEEEEcCcc---hHHHHHHhcCCcEEeecccccHHHHH
Confidence 578999999999999999999999999875543 55677776664 33344433 23223566677887653
No 230
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=45.03 E-value=96 Score=21.86 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=25.9
Q ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCcee
Q 041815 146 AVVTVPAYFTDSQRQATKDAGAMAGLNVL 174 (475)
Q Consensus 146 ~vitVP~~~~~~~r~~l~~a~~~agl~~~ 174 (475)
-.+..|+.++..+|..+-+.|+..||...
T Consensus 18 ~~l~F~p~ls~~eR~~vH~lA~~~gL~s~ 46 (60)
T cd02641 18 TELEFPPTLSSHDRLLVHELAEELGLRHE 46 (60)
T ss_pred CcEECCCCCCHHHHHHHHHHHHHcCCceE
Confidence 56888999999999999999999999653
No 231
>KOG2517 consensus Ribulose kinase and related carbohydrate kinases [Carbohydrate transport and metabolism]
Probab=44.81 E-value=36 Score=35.30 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.2
Q ss_pred CCCEEEEecCCccEEEEEEE
Q 041815 6 AAPAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~ 25 (475)
...++|||.|||.+++++++
T Consensus 5 ~~~~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 5 EPVVLGIDVGTTSARALVFN 24 (516)
T ss_pred cceEEEEEcCCCceEEEEEe
Confidence 46899999999999999986
No 232
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=44.28 E-value=1e+02 Score=26.70 Aligned_cols=91 Identities=20% Similarity=0.268 Sum_probs=50.1
Q ss_pred eHHHHHHHHHHHHHHHHHhhcCCCCCeEEEEeCCCCCHHH------------HHHHH-HHHHHcCCceeeeeechHHHHH
Q 041815 119 AAEEISSMVLAKMRDIAEDYVGSPVSNAVVTVPAYFTDSQ------------RQATK-DAGAMAGLNVLKIISEPTAAAI 185 (475)
Q Consensus 119 ~~~~l~~~~L~~l~~~a~~~~~~~~~~~vitVP~~~~~~~------------r~~l~-~a~~~agl~~~~~i~Ep~Aaa~ 185 (475)
++++++..+.+.+.+...+.- .. .+.|++|...+... .-.+. ..-+..++ .+.+.++..|+|+
T Consensus 31 ~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~-pv~i~Nd~~~~a~ 106 (179)
T PF00480_consen 31 SPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEERFGV-PVIIENDANAAAL 106 (179)
T ss_dssp SHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHHHTS-EEEEEEHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcccce-EEEEecCCCccee
Confidence 456666665555555544432 11 45555554332221 01122 12223354 5689999999999
Q ss_pred HhhhccCCCCCceEEEEEeCCCceEEEEE
Q 041815 186 AYGLDRKATSEKNVLIFDLGGGTFDVSLL 214 (475)
Q Consensus 186 ~~~~~~~~~~~~~vlvvD~Gggt~dvsv~ 214 (475)
+..........+.++.+-+|.| .-.+++
T Consensus 107 ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 107 AEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred ehhhcCccCCcceEEEEEeecC-CCccee
Confidence 8766544433568888888876 444444
No 233
>KOG1705 consensus Uncharacterized conserved protein, contains CXXC motifs [Function unknown]
Probab=43.72 E-value=6.4 Score=29.85 Aligned_cols=21 Identities=24% Similarity=0.630 Sum_probs=19.1
Q ss_pred ccccccCCCCCCceeecccCC
Q 041815 444 SKCNGCKRPAFGLMYRCELCN 464 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~~ 464 (475)
.+|-.|+.+|-...|+|.+|-
T Consensus 56 ~~ciic~~~gV~d~~yc~ect 76 (110)
T KOG1705|consen 56 GRCVICGGVGVSDAYYCKECT 76 (110)
T ss_pred CceEEecCCcccchHHHHHHH
Confidence 689999999999999999873
No 234
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=43.62 E-value=21 Score=32.44 Aligned_cols=33 Identities=21% Similarity=0.250 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHcCCc---eeeeeechHHHHHHhhh
Q 041815 157 SQRQATKDAGAMAGLN---VLKIISEPTAAAIAYGL 189 (475)
Q Consensus 157 ~~r~~l~~a~~~agl~---~~~~i~Ep~Aaa~~~~~ 189 (475)
.-.+.+.+|....|++ ++.++|+.+|..++..+
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3467788888888875 67789999998877654
No 235
>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=43.43 E-value=7.5 Score=37.55 Aligned_cols=41 Identities=29% Similarity=0.593 Sum_probs=30.7
Q ss_pred cccceeccCcccccccccCCC--CCCc-eeecccCCCCCCcCCC
Q 041815 432 AHDLQLKNHKTLSKCNGCKRP--AFGL-MYRCELCNFNLHIPCM 472 (475)
Q Consensus 432 ~h~l~~~~~~~~~~c~~c~~~--~~~~-~~~~~~~~~~~~~~~~ 472 (475)
.|.+|.|+-+-.-.|-.|--. |-|+ .|+|..|.+-.|++|-
T Consensus 130 gh~fqakr~nrr~~c~ic~d~iwglgrqgyrcinckl~vhkkch 173 (593)
T KOG0695|consen 130 GHLFQAKRFNRRAYCGICSDRIWGLGRQGYRCINCKLLVHKKCH 173 (593)
T ss_pred Ccchhhhhhccceeeeechhhhhhcccccceeecceeehhhhhc
Confidence 467777774444678888654 5544 6999999999999994
No 236
>PF03660 PHF5: PHF5-like protein; InterPro: IPR005345 Phf5 is a member of a novel murine multigene family that is highly conserved during evolution and belongs to the superfamily of PHD-finger proteins. At least one example, from Mus musculus (Mouse), may act as a chromatin-associated protein []. The Schizosaccharomyces pombe (Fission yeast) ini1 gene is essential, required for splicing []. It is localised in the nucleus, but not detected in the nucleolus and can be complemented by human ini1 []. The proteins of this family contain five CXXC motifs.; PDB: 2K0A_A.
Probab=42.91 E-value=7.4 Score=30.48 Aligned_cols=20 Identities=30% Similarity=0.709 Sum_probs=14.1
Q ss_pred ccccccC-CCCCCceeecccC
Q 041815 444 SKCNGCK-RPAFGLMYRCELC 463 (475)
Q Consensus 444 ~~c~~c~-~~~~~~~~~~~~~ 463 (475)
.+|-.|+ -+|....|+|.+|
T Consensus 56 ~rCIiCg~~~g~sdAYYC~eC 76 (106)
T PF03660_consen 56 GRCIICGSGPGVSDAYYCWEC 76 (106)
T ss_dssp SB-TTTSSSB--EE-EE-HHH
T ss_pred ceEEEecCCCCcccceehhhh
Confidence 7999999 9999999999988
No 237
>PRK13320 pantothenate kinase; Reviewed
Probab=41.65 E-value=30 Score=32.30 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred CEEEEecCCccEEEEEEECCc
Q 041815 8 PAIGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g~ 28 (475)
.++.||+|+|+++.+++++++
T Consensus 3 M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 3 MNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred eEEEEEeCCCcEEEEEEECCE
Confidence 589999999999999998663
No 238
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=40.55 E-value=12 Score=40.06 Aligned_cols=29 Identities=28% Similarity=0.695 Sum_probs=25.2
Q ss_pred ccccccCCCCC-CceeecccCCCC-CCcCCC
Q 041815 444 SKCNGCKRPAF-GLMYRCELCNFN-LHIPCM 472 (475)
Q Consensus 444 ~~c~~c~~~~~-~~~~~~~~~~~~-~~~~~~ 472 (475)
-+|+.|..+-. --+..|+.|||- +|.+|-
T Consensus 216 ~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCL 246 (1134)
T KOG0825|consen 216 VKCDICTVHDPEDVLLLCDSCNKVYYHVYCL 246 (1134)
T ss_pred ccceeeccCChHHhheeecccccceeecccc
Confidence 58999999876 567899999999 999994
No 239
>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]
Probab=40.23 E-value=9.3 Score=39.36 Aligned_cols=31 Identities=29% Similarity=0.620 Sum_probs=24.3
Q ss_pred ccccccCCCCC---CceeecccCCCCCCcCCCCC
Q 041815 444 SKCNGCKRPAF---GLMYRCELCNFNLHIPCMFI 474 (475)
Q Consensus 444 ~~c~~c~~~~~---~~~~~~~~~~~~~~~~~~~~ 474 (475)
-.|.-|+.--- --...|+.|.|+-|++||.+
T Consensus 279 TVCq~CkkLLkGL~rQGlqCkDCk~NcHkrCa~~ 312 (888)
T KOG4236|consen 279 TVCQYCKKLLKGLFRQGLQCKDCKFNCHKRCAMK 312 (888)
T ss_pred hHHHHHHHHHHHHHhcCcccccCCcchhhhhhhh
Confidence 37888886533 34578999999999999974
No 240
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=40.11 E-value=19 Score=29.99 Aligned_cols=18 Identities=28% Similarity=0.353 Sum_probs=15.3
Q ss_pred EEEecCCccEEEEEEECC
Q 041815 10 IGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~g 27 (475)
+|||+|+..+.+|+.+..
T Consensus 1 laiD~G~kriGvA~~d~~ 18 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDIT 18 (130)
T ss_pred CeEccCCCeEEEEEECCC
Confidence 599999999999987543
No 241
>PLN02377 3-ketoacyl-CoA synthase
Probab=38.19 E-value=88 Score=32.66 Aligned_cols=55 Identities=5% Similarity=0.103 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEE-ecCCCCcHHHHHHHHHHcC
Q 041815 305 RFEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVI-VGGSARIPKVQQLLQEFFN 359 (475)
Q Consensus 305 ~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~v~~~l~~~~~ 359 (475)
.++...++...-+.+.++++|+++++++++||.|++ +.+....|.+-.+|.+.++
T Consensus 164 ~~~~~~~ea~~l~~~A~~~aL~kaGi~p~dID~LVv~cS~~~~~PSlaa~V~~~LG 219 (502)
T PLN02377 164 SMAAAREEAEQVMFGALDNLFANTNVNPKDIGILVVNCSLFNPTPSLSAMIVNKYK 219 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCcHHHHHHHHhC
Confidence 345555555666678888999999999999999987 3444568999999999993
No 242
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=37.34 E-value=25 Score=24.69 Aligned_cols=21 Identities=29% Similarity=0.953 Sum_probs=12.4
Q ss_pred ccccccCCCCCCceeecccCCCC
Q 041815 444 SKCNGCKRPAFGLMYRCELCNFN 466 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~~~~ 466 (475)
++|.-|.+. +-.|.|..|.|-
T Consensus 37 ~RC~~CRk~--~~~Y~CP~CGF~ 57 (59)
T PRK14890 37 YRCEKCRKQ--SNPYTCPKCGFE 57 (59)
T ss_pred eechhHHhc--CCceECCCCCCc
Confidence 334444333 356888888873
No 243
>TIGR00016 ackA acetate kinase. Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.
Probab=37.10 E-value=1.2e+02 Score=30.73 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCC-CcHHHHHHHHHHcC
Q 041815 310 NMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (475)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~~~ 359 (475)
++-.+.++...|-......+ ..+|.|+++||-+ ..+.|++.|.+.+.
T Consensus 306 ~~~f~yri~k~Iga~~a~L~---G~vDaiVFTGGIGEns~~vr~~i~~~l~ 353 (404)
T TIGR00016 306 IKMYVHRIAKYIGSYIASLE---GNLDAIVFTGGIGENAATVRELVLEALE 353 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhC---CCCCEEEEcCccccCCHHHHHHHHhhhh
Confidence 34444455555544444322 1489999999999 99999999998774
No 244
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=37.03 E-value=27 Score=33.65 Aligned_cols=42 Identities=36% Similarity=0.570 Sum_probs=26.8
Q ss_pred ceeeeeechHHHHHHhhhccCCCCCceEEEEEeCCCceEEEEEE
Q 041815 172 NVLKIISEPTAAAIAYGLDRKATSEKNVLIFDLGGGTFDVSLLT 215 (475)
Q Consensus 172 ~~~~~i~Ep~Aaa~~~~~~~~~~~~~~vlvvD~Gggt~dvsv~~ 215 (475)
+...+.+-|.|.+..... . ....+.++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~-~-~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAA-R-LTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH----HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhh-h-cCCCCCEEEEeCCCCEEEEEEEE
Confidence 445677778777666655 1 11256899999999999999987
No 245
>PLN02902 pantothenate kinase
Probab=36.26 E-value=1.9e+02 Score=32.22 Aligned_cols=49 Identities=12% Similarity=0.016 Sum_probs=32.1
Q ss_pred CCCCeEEEecCCCCc-----HHHHHHHHHHc--CCcccccCCCCcchhhchHHHHHH
Q 041815 333 SSVDDVVIVGGSARI-----PKVQQLLQEFF--NGKRLCKNINPDEAVAYGAAVQAA 382 (475)
Q Consensus 333 ~~i~~VvLvGG~s~~-----p~v~~~l~~~~--~~~~v~~~~~p~~ava~Gaa~~a~ 382 (475)
..++.|+++|.+-|- ..+..++. ++ +..+.....+-...-|+||.+...
T Consensus 345 ~~ikrIvF~G~fIr~h~~tm~~ls~Ai~-fwSkg~~~a~FlrHeGylGAlGafl~~~ 400 (876)
T PLN02902 345 FGLKRIFFGGFFIRGHAYTMDTISFAVH-FWSKGEAQAMFLRHEGFLGALGAFMSYE 400 (876)
T ss_pred cCCCEEEEecceecCCcchHHHHHHHHH-HhcCCceEEEEecccchhHHHHHHhcCC
Confidence 458899999988553 33444444 33 234566666777888999987654
No 246
>KOG1369 consensus Hexokinase [Carbohydrate transport and metabolism]
Probab=36.19 E-value=2.3e+02 Score=29.22 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.2
Q ss_pred CCceEEEEEeCCCceEEEEEEEeCCe
Q 041815 195 SEKNVLIFDLGGGTFDVSLLTIEKGI 220 (475)
Q Consensus 195 ~~~~vlvvD~Gggt~dvsv~~~~~~~ 220 (475)
+...++.+|+||..+-|..+.++++.
T Consensus 84 E~G~~lalDLGGTn~Rv~~v~L~g~~ 109 (474)
T KOG1369|consen 84 EKGKFLALDLGGTNFRVLLVKLGGGR 109 (474)
T ss_pred cCCCEEEEecCCCceEEEEEEecCCc
Confidence 46789999999999999999998773
No 247
>COG2888 Predicted Zn-ribbon RNA-binding protein with a function in translation [Translation, ribosomal structure and biogenesis]
Probab=35.71 E-value=15 Score=25.68 Aligned_cols=21 Identities=33% Similarity=0.980 Sum_probs=14.0
Q ss_pred ccccccCCCCCCceeecccCCCC
Q 041815 444 SKCNGCKRPAFGLMYRCELCNFN 466 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~~~~ 466 (475)
++|.-|...| -.|+|..|.|-
T Consensus 39 ~Rc~~CRk~g--~~Y~Cp~CGF~ 59 (61)
T COG2888 39 YRCAKCRKLG--NPYRCPKCGFE 59 (61)
T ss_pred ehhhhHHHcC--CceECCCcCcc
Confidence 5555555544 46999999883
No 248
>PF13917 zf-CCHC_3: Zinc knuckle
Probab=34.90 E-value=18 Score=23.55 Aligned_cols=17 Identities=24% Similarity=0.831 Sum_probs=14.9
Q ss_pred ccccccCCCCCCceeecc
Q 041815 444 SKCNGCKRPAFGLMYRCE 461 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~ 461 (475)
-.|.-|+..|+ |.|.|.
T Consensus 5 ~~CqkC~~~GH-~tyeC~ 21 (42)
T PF13917_consen 5 VRCQKCGQKGH-WTYECP 21 (42)
T ss_pred CcCcccCCCCc-chhhCC
Confidence 57999999998 889987
No 249
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=34.84 E-value=31 Score=35.18 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=26.8
Q ss_pred hCCCCCCCCCeEEEecCC-CCcH--HHHHHHHH-HcC--CcccccCCCCcc
Q 041815 327 TGKTDNSSVDDVVIVGGS-ARIP--KVQQLLQE-FFN--GKRLCKNINPDE 371 (475)
Q Consensus 327 ~~~~~~~~i~~VvLvGG~-s~~p--~v~~~l~~-~~~--~~~v~~~~~p~~ 371 (475)
+.|.+...++.|+-+||. ++.| .-.+.++. .|. +..+..+.+|+.
T Consensus 382 q~GkDL~~v~~vigtGGvL~ha~~~~~~~il~~~~~~~~~~~~L~p~~~~~ 432 (463)
T TIGR01319 382 QIGKDLLNVKCVIGSGGVLSHASQFDMGEILKAGEFDDADARHLKPQEFEY 432 (463)
T ss_pred ccCCCchhCcEEEEeCcceeCCCCcCHHHHHhhhhccCCCccccCCcCCeE
Confidence 344555668899999986 6776 55556543 332 334445555554
No 250
>COG0020 UppS Undecaprenyl pyrophosphate synthase [Lipid metabolism]
Probab=34.84 E-value=2.8e+02 Score=25.90 Aligned_cols=71 Identities=17% Similarity=0.228 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHH-----------HHHHHHHHhCCCCCCCCCeE
Q 041815 270 DCERAKRILSSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCI-----------KHVDMCLRTGKTDNSSVDDV 338 (475)
Q Consensus 270 ~~e~~K~~ls~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~-----------~~i~~~l~~~~~~~~~i~~V 338 (475)
..+.+++.=..+....+.+-..++| |+|+.++++.+++... +.+.+.|...+++ ++|-+
T Consensus 122 ~i~~~e~~t~~~~~~~l~~a~nYGG--------R~eI~~avr~ia~~v~~g~l~~~~I~e~~i~~~L~~~~~p--dpDLl 191 (245)
T COG0020 122 AIEKAEEKTKNNTGLTLNIAVNYGG--------RDEIVDAVRKIAEDVAAGKLSPEDIDEELISSHLYTSGLP--DPDLL 191 (245)
T ss_pred HHHHHHHhccCCCceEEEEeeCCCC--------HHHHHHHHHHHHHHHHcCCCChHHcCHHHHHHhhcccCCC--CCCEE
Confidence 3444444333445555665555554 7888888888877663 3455555554433 79999
Q ss_pred EEecCCCCcHHH
Q 041815 339 VIVGGSARIPKV 350 (475)
Q Consensus 339 vLvGG~s~~p~v 350 (475)
+=+||--|+..+
T Consensus 192 IRTsGe~RlSnF 203 (245)
T COG0020 192 IRTSGEQRLSNF 203 (245)
T ss_pred EeCCCccccccc
Confidence 999999777543
No 251
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=34.44 E-value=1.3e+02 Score=27.44 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhhh
Q 041815 143 VSNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGL 189 (475)
Q Consensus 143 ~~~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~ 189 (475)
+.-++|+ .|++--..+++ +.++++++.+..-+..+|+.++.
T Consensus 70 vdaiiIa---Cf~DPgl~~~R---e~~~~PviGi~eAsv~~A~~vgr 110 (230)
T COG4126 70 VDAIIIA---CFSDPGLAAAR---ERAAIPVIGICEASVLAALFVGR 110 (230)
T ss_pred CcEEEEE---ecCChHHHHHH---HHhCCCceehhHHHHHHHHHhcc
Confidence 4456665 67775445444 45578898888888888887763
No 252
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=34.34 E-value=1e+02 Score=30.28 Aligned_cols=45 Identities=9% Similarity=0.083 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQ 351 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~ 351 (475)
|.+.+..++.+...++++|++++++..+||.|-.+=|-+..+.+.
T Consensus 44 e~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~ 88 (342)
T COG0533 44 ELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALL 88 (342)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHH
Confidence 456678889999999999999999999999999999888888775
No 253
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=33.99 E-value=64 Score=27.39 Aligned_cols=18 Identities=17% Similarity=0.267 Sum_probs=16.7
Q ss_pred CEEEEecCCccEEEEEEE
Q 041815 8 PAIGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~ 25 (475)
.+++||.|+-|.+.++.+
T Consensus 2 ii~sIDiGikNlA~~iie 19 (143)
T PF04848_consen 2 IILSIDIGIKNLAYCIIE 19 (143)
T ss_pred eEEEEecCCCceeEEEEE
Confidence 689999999999999986
No 254
>PLN03173 chalcone synthase; Provisional
Probab=33.94 E-value=1.5e+02 Score=29.80 Aligned_cols=49 Identities=10% Similarity=0.186 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCC-CcHHHHHHHHHHcC
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~~~ 359 (475)
+...+-..+.++++|++++++..+|+.|+++..+. ..|.+--.|.+.++
T Consensus 100 ~~a~~La~~Aa~~AL~~ag~~~~dId~li~~t~t~~~~P~~a~~l~~~LG 149 (391)
T PLN03173 100 VEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (391)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcccHHHHHHHHHhC
Confidence 33444456778999999999999999998876443 58999999999993
No 255
>PLN03172 chalcone synthase family protein; Provisional
Probab=33.77 E-value=1.5e+02 Score=29.99 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCC-CcHHHHHHHHHHcC
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~~~ 359 (475)
..+...+-..+.++++|++++++..+|+.|+++-.+. .+|.+--.|.+.++
T Consensus 98 ~~~~a~~La~~Aa~~aL~~ag~~~~dId~ii~~t~t~~~~P~~a~~l~~~LG 149 (393)
T PLN03172 98 VVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLG 149 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCcCchHHHHHHHHhC
Confidence 3344455556778999999999999999998776444 69999999999993
No 256
>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species. The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane
Probab=33.74 E-value=1.1e+02 Score=29.31 Aligned_cols=49 Identities=14% Similarity=0.124 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEE-ecCCCCcHHHHHHHHHHcC
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVI-VGGSARIPKVQQLLQEFFN 359 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~v~~~l~~~~~ 359 (475)
++.-.-+...++++|+++++++.+||.+|. +..+.-.|.+-.+|.+.|+
T Consensus 81 ~Eae~v~f~av~~LL~ktgv~p~dIdiLVvncs~f~ptPSLsamIvnr~~ 130 (290)
T PF08392_consen 81 EEAEMVIFGAVDDLLAKTGVKPSDIDILVVNCSLFNPTPSLSAMIVNRYG 130 (290)
T ss_pred HHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECcCCCcCCcHHHHHHHHhC
Confidence 333334567788899999999999998865 4677889999999999993
No 257
>PLN03170 chalcone synthase; Provisional
Probab=32.25 E-value=1.3e+02 Score=30.50 Aligned_cols=51 Identities=10% Similarity=0.171 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCC-CcHHHHHHHHHHcC
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSA-RIPKVQQLLQEFFN 359 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s-~~p~v~~~l~~~~~ 359 (475)
..+...+--.+..+++|++++++.++|+.|+++-.+. .+|.+.-.|.+.++
T Consensus 102 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~LG 153 (401)
T PLN03170 102 VVVEVPKLGKAAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKMLG 153 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEEccCCCCCChHHHHHHHHhC
Confidence 3344455566788999999999999999988776443 59999999999994
No 258
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.15 E-value=38 Score=24.38 Aligned_cols=28 Identities=25% Similarity=0.673 Sum_probs=20.6
Q ss_pred ccccccccCCC----CCCceeecccCCCCCCc
Q 041815 442 TLSKCNGCKRP----AFGLMYRCELCNFNLHI 469 (475)
Q Consensus 442 ~~~~c~~c~~~----~~~~~~~~~~~~~~~~~ 469 (475)
+.-.|..|+.. ..++.|.|..|.+-+|-
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~~r 58 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFTCPNCGFEMDR 58 (69)
T ss_pred CccCccCcccccccccccceEEcCCCCCEECc
Confidence 33567777765 35789999999987663
No 259
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=32.15 E-value=23 Score=36.49 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=14.6
Q ss_pred EEEecCCccEEEEEEE
Q 041815 10 IGIDLGTTYSCVGVWQ 25 (475)
Q Consensus 10 vGIDlGTt~s~va~~~ 25 (475)
+|||+|||+++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999885
No 260
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=31.72 E-value=10 Score=23.92 Aligned_cols=16 Identities=31% Similarity=0.629 Sum_probs=12.1
Q ss_pred eeecccCCCCCCcCCCC
Q 041815 457 MYRCELCNFNLHIPCMF 473 (475)
Q Consensus 457 ~~~~~~~~~~~~~~~~~ 473 (475)
+|+|..|+ +||.+|-.
T Consensus 1 MyYCi~Cs-~~h~e~~~ 16 (41)
T PF13119_consen 1 MYYCINCS-EIHHEKGI 16 (41)
T ss_pred CEEEEEhH-HhHHhhcc
Confidence 58899887 67777754
No 261
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=31.42 E-value=32 Score=22.79 Aligned_cols=30 Identities=17% Similarity=0.367 Sum_probs=24.5
Q ss_pred ccccccCCCCCCceeecccC-CCCCCcCCCC
Q 041815 444 SKCNGCKRPAFGLMYRCELC-NFNLHIPCMF 473 (475)
Q Consensus 444 ~~c~~c~~~~~~~~~~~~~~-~~~~~~~~~~ 473 (475)
|.|+-|+..-..-+|.|..+ ++||=+.|=.
T Consensus 1 y~C~~Cg~D~t~vryh~~~~~~~dLC~~CF~ 31 (45)
T cd02336 1 YHCFTCGNDCTRVRYHNLKAKKYDLCPSCYQ 31 (45)
T ss_pred CcccCCCCccCceEEEecCCCccccChHHHh
Confidence 57999999999899999865 4888777743
No 262
>COG4393 Predicted membrane protein [Function unknown]
Probab=31.40 E-value=20 Score=34.41 Aligned_cols=24 Identities=21% Similarity=0.647 Sum_probs=20.9
Q ss_pred cccccCCCCC---CceeecccCCCCCC
Q 041815 445 KCNGCKRPAF---GLMYRCELCNFNLH 468 (475)
Q Consensus 445 ~c~~c~~~~~---~~~~~~~~~~~~~~ 468 (475)
-|+.||.+|+ |.--.|..||-.+-
T Consensus 336 AC~iCGd~GYv~e~dqvICv~C~Vrmf 362 (405)
T COG4393 336 ACDICGDQGYVMEGDQVICVRCDVRMF 362 (405)
T ss_pred HHHhccccceEeECCEEEEEEccEEEE
Confidence 6999999998 88999999997654
No 263
>COG5418 Predicted secreted protein [Function unknown]
Probab=30.87 E-value=2.3e+02 Score=24.00 Aligned_cols=69 Identities=17% Similarity=0.287 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCc--eeEEEEeccc---cCccceEEEcHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEec
Q 041815 270 DCERAKRILSSTS--QTTIEIDSLY---EGIDFSSVMTRARFEE-LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVG 342 (475)
Q Consensus 270 ~~e~~K~~ls~~~--~~~~~i~~~~---~~~~~~~~itr~~~~~-~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvG 342 (475)
.+..+++.++.++ ...+.+|+.. -+.+ +-.+||++|+. -.+.+.+++.++|-+.|++-. ++.+ .++++|
T Consensus 30 ~~~ev~~~l~~npk~~~IiqlPCPE~~yLg~~-R~~~tke~~d~~~yRr~c~ki~~pi~~~l~e~k--~d~~-kii~IG 104 (164)
T COG5418 30 TAKEVRKALPSNPKDWNIIQLPCPEFEYLGWP-RPPMTKEVFDHPGYRRVCRKIADPIGRVLEEEK--PDGI-KIIFIG 104 (164)
T ss_pred HHHHHHHhhccCCCCCceEeccCchHHhhCCC-CCCcCHHHhcchhHHHHHHHHHHHHHHHHHHhC--cCCc-eEEEEe
Confidence 4556777787773 3445555421 1111 13578888875 356677778888888888732 2112 667776
No 264
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=30.85 E-value=32 Score=35.66 Aligned_cols=17 Identities=35% Similarity=0.415 Sum_probs=15.2
Q ss_pred EEEecCCccEEEEEEEC
Q 041815 10 IGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~ 26 (475)
||||+||+++++++.+.
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999999853
No 265
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=30.81 E-value=31 Score=22.68 Aligned_cols=24 Identities=25% Similarity=0.664 Sum_probs=18.2
Q ss_pred ccccccCCC---CCCceeecccCCCCC
Q 041815 444 SKCNGCKRP---AFGLMYRCELCNFNL 467 (475)
Q Consensus 444 ~~c~~c~~~---~~~~~~~~~~~~~~~ 467 (475)
|+|--|+.. -.+...+|.+|.+.|
T Consensus 3 Y~C~~Cg~~~~~~~~~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSKDVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCCCceECCCCCceE
Confidence 788888875 336778999998765
No 266
>PF13941 MutL: MutL protein
Probab=30.70 E-value=1.2e+02 Score=31.14 Aligned_cols=47 Identities=21% Similarity=0.265 Sum_probs=31.1
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCch-hHHHHHHHHHH
Q 041815 199 VLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGG-EDFDNRMVNHF 245 (475)
Q Consensus 199 vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG-~~id~~l~~~l 245 (475)
+|++|||+.+|-++++....+..++++.+....-=. .|+..-+.+.+
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv~~~Dv~~G~~~A~ 49 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTVEPGDVTIGLNNAL 49 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCcCcccHHHHHHHHH
Confidence 799999999999999996666666666543221112 35555554444
No 267
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=30.41 E-value=89 Score=30.88 Aligned_cols=45 Identities=13% Similarity=0.085 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHH
Q 041815 308 ELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQ 352 (475)
Q Consensus 308 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~ 352 (475)
...+...+.+...++++|++++++..+|+.|..+-|-...+.++-
T Consensus 44 ~a~r~H~~~l~~~i~~~l~~a~~~~~did~Iavt~GPGl~~~LrV 88 (345)
T PTZ00340 44 ETAQHHREHILSLVKEALEEAKITPSDISLICYTKGPGMGAPLSV 88 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHhhHHH
Confidence 455667888999999999999999999999999998888787763
No 268
>PHA00626 hypothetical protein
Probab=30.35 E-value=41 Score=23.26 Aligned_cols=14 Identities=29% Similarity=0.484 Sum_probs=10.8
Q ss_pred CceeecccCCCCCC
Q 041815 455 GLMYRCELCNFNLH 468 (475)
Q Consensus 455 ~~~~~~~~~~~~~~ 468 (475)
.-+|.|+.|+|..-
T Consensus 21 snrYkCkdCGY~ft 34 (59)
T PHA00626 21 SDDYVCCDCGYNDS 34 (59)
T ss_pred CcceEcCCCCCeec
Confidence 46799999998753
No 269
>PRK14878 UGMP family protein; Provisional
Probab=30.10 E-value=70 Score=31.29 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHH
Q 041815 308 ELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQ 351 (475)
Q Consensus 308 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~ 351 (475)
...+...+.+...++++|++++++..++|.|.++-|-...+.++
T Consensus 39 ~~~~~h~~~l~~~i~~~l~~a~~~~~did~Iavt~gPG~~~~lr 82 (323)
T PRK14878 39 EAAQHHAEVAPELLRKALEKAGISIEDIDAVAVSQGPGLGPALR 82 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccchH
Confidence 34455667788899999999999999999999998776666665
No 270
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=29.74 E-value=91 Score=27.50 Aligned_cols=50 Identities=26% Similarity=0.502 Sum_probs=34.6
Q ss_pred CCCCCeEEEecCCCCc-----H---HHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 332 NSSVDDVVIVGGSARI-----P---KVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 332 ~~~i~~VvLvGG~s~~-----p---~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
..++|.|+|.||.... + .+.+.|+.... ..-|-.++..|..+.+..+.|.
T Consensus 44 ~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~------~~~pilgiC~G~q~l~~~lGG~ 101 (188)
T cd01741 44 LDDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALA------AGKPVLGICLGHQLLARALGGK 101 (188)
T ss_pred cccCCEEEECCCCccCCccCChHHHHHHHHHHHHHH------CCCCEEEECccHHHHHHHhCCE
Confidence 3568999999998654 3 34444554441 1257889999999998888764
No 271
>PLN02854 3-ketoacyl-CoA synthase
Probab=29.55 E-value=95 Score=32.54 Aligned_cols=54 Identities=7% Similarity=0.144 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEE-ecCCCCcHHHHHHHHHHcC
Q 041815 306 FEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVI-VGGSARIPKVQQLLQEFFN 359 (475)
Q Consensus 306 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvL-vGG~s~~p~v~~~l~~~~~ 359 (475)
+++..++.-.-+...++++|+++++++++||.||+ +.+....|.+-..|.+.++
T Consensus 181 ~~~~r~ea~~v~~~~~~~lL~kaGi~p~dID~LIv~cS~~~p~PSlAa~I~n~LG 235 (521)
T PLN02854 181 MEEARAEAEAVMFGALDSLFSKTGVKPRDIGILIVNCSLFNPTPSLSAMIVNHYK 235 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCCCHHHHHHHHhC
Confidence 33444444444566778889999999999999987 3444568999999999993
No 272
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=29.52 E-value=6.9 Score=33.95 Aligned_cols=21 Identities=19% Similarity=0.253 Sum_probs=17.2
Q ss_pred CCEEEEecCCccEEEEEEECC
Q 041815 7 APAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 7 ~~vvGIDlGTt~s~va~~~~g 27 (475)
.-+||+|+||+|++++..++.
T Consensus 57 ~d~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 57 NDILGTGLGTNNAIREEREKS 77 (213)
T ss_pred cceeccCCCcchHHHHHHhcc
Confidence 457999999999999877643
No 273
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=29.38 E-value=60 Score=30.29 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=16.9
Q ss_pred EEEecCCccEEEEEEECCc
Q 041815 10 IGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~g~ 28 (475)
+.||+|+|+++++++++++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6899999999999998764
No 274
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=29.35 E-value=88 Score=30.56 Aligned_cols=43 Identities=14% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHH
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQ 351 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~ 351 (475)
+.+...+.+...++++|++++++..++|.|.++-|-...++++
T Consensus 41 ~~~~H~~~l~~~i~~~l~~~~~~~~did~Iavt~gPg~~~~l~ 83 (322)
T TIGR03722 41 AAEHHAEVAPKLIKEALEEAGVSLEDIDAVAFSQGPGLGPCLR 83 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCchHHhHH
Confidence 4455677788889999999999999999999998877776665
No 275
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=29.28 E-value=67 Score=29.03 Aligned_cols=21 Identities=24% Similarity=0.387 Sum_probs=17.0
Q ss_pred EEEEecCCccEEEEEEECCcE
Q 041815 9 AIGIDLGTTYSCVGVWQHDRV 29 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~~ 29 (475)
++-||+|+|+++.++.+++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987743
No 276
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=28.96 E-value=73 Score=32.59 Aligned_cols=61 Identities=21% Similarity=0.334 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHH-----cCC----ceeeeeechHHH-----HHHhhhccCCC------CCceEEEEEeCCCceEEEEEE
Q 041815 156 DSQRQATKDAGAM-----AGL----NVLKIISEPTAA-----AIAYGLDRKAT------SEKNVLIFDLGGGTFDVSLLT 215 (475)
Q Consensus 156 ~~~r~~l~~a~~~-----agl----~~~~~i~Ep~Aa-----a~~~~~~~~~~------~~~~vlvvD~Gggt~dvsv~~ 215 (475)
..+++++.+.++. .++ ..+++|+-.+=+ ++.|+...-.. ...++-++|+||+++.++...
T Consensus 103 ~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 103 EEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp HHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEE
T ss_pred hhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeecc
Confidence 3455555555443 233 336777644433 33344432222 257899999999999998554
Q ss_pred E
Q 041815 216 I 216 (475)
Q Consensus 216 ~ 216 (475)
-
T Consensus 183 ~ 183 (434)
T PF01150_consen 183 S 183 (434)
T ss_dssp T
T ss_pred C
Confidence 3
No 277
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=28.68 E-value=1.1e+02 Score=26.68 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=25.1
Q ss_pred CEEEEecCCcc-EEEEEEECCcEEEEecCCCC
Q 041815 8 PAIGIDLGTTY-SCVGVWQHDRVEIIANDQGN 38 (475)
Q Consensus 8 ~vvGIDlGTt~-s~va~~~~g~~~vi~~~~g~ 38 (475)
.+.|||+|-.. ++++++.+|+.+++..+..+
T Consensus 2 my~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 2 MYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred cccccccccCCCceEEEEECCEEEEEEccccc
Confidence 57899998776 68888899999999866553
No 278
>PLN03168 chalcone synthase; Provisional
Probab=28.61 E-value=1.9e+02 Score=29.16 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCC-CCcHHHHHHHHHHcCCc
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGS-ARIPKVQQLLQEFFNGK 361 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~-s~~p~v~~~l~~~~~~~ 361 (475)
..+...+--.+..+++|+++++++++|+.|+++-.+ -.+|.+--.|.+.+ |.
T Consensus 97 ~~~~a~~La~~Aa~~AL~~ag~~~~dId~lI~~T~Tg~~~Ps~a~~l~~~L-Gl 149 (389)
T PLN03168 97 VVVQVPKLAAEAAQKAIKEWGGRKSDITHIVFATTSGVNMPGADHALAKLL-GL 149 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCccHHHHHHHHh-Cc
Confidence 334444555778899999999999999999876322 34799999999999 44
No 279
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=28.60 E-value=85 Score=30.39 Aligned_cols=45 Identities=13% Similarity=0.099 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHH
Q 041815 308 ELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQ 352 (475)
Q Consensus 308 ~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~ 352 (475)
...+...+.+...++++|++++++..+++.|.++-|-...+.++-
T Consensus 43 ~~~~~H~~~l~~~i~~~l~~~~~~~~did~iav~~GPG~~tglrv 87 (305)
T TIGR00329 43 EASRHHAENIPPLLERALIESNVDKSEIDLIAYTQGPGLGGSLRV 87 (305)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCchhhHHH
Confidence 345567788889999999999999999999999999988888874
No 280
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=28.29 E-value=95 Score=25.88 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.3
Q ss_pred EEEEecCCccEEEEEEECCc
Q 041815 9 AIGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~ 28 (475)
+||||+|-....+++..+++
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 68999999999999886655
No 281
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.23 E-value=2.9e+02 Score=25.92 Aligned_cols=53 Identities=25% Similarity=0.293 Sum_probs=36.2
Q ss_pred CCCCCCeEEEecCCCCcHH---HHHHHHHHcCCcccccCCCCcchhhchHHHHHHHH-cC
Q 041815 331 DNSSVDDVVIVGGSARIPK---VQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVL-SG 386 (475)
Q Consensus 331 ~~~~i~~VvLvGG~s~~p~---v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~-~~ 386 (475)
.....+.|+|.|--+-+.. ++++|.+.... ++. .-|-+..+.|.|+.|.-. +|
T Consensus 265 ~~~~~d~v~laGsvg~~~ep~dv~~ri~~~v~~-k~~--~l~~esaaiG~a~IA~DI~~G 321 (332)
T COG4020 265 VVYGCDGVVLAGSVGGDREPMDVLKRIKSKVFN-KVA--VLPPESAAIGLALIARDIASG 321 (332)
T ss_pred eecCCceEEEecccccccchhhHHHHHHHHHHH-HHh--hcCchhhhhhhHHHHHHHHcC
Confidence 3456889999997776666 78888776622 222 235566899999987644 55
No 282
>PRK13324 pantothenate kinase; Reviewed
Probab=28.05 E-value=67 Score=30.29 Aligned_cols=20 Identities=30% Similarity=0.620 Sum_probs=17.5
Q ss_pred EEEEecCCccEEEEEEECCc
Q 041815 9 AIGIDLGTTYSCVGVWQHDR 28 (475)
Q Consensus 9 vvGIDlGTt~s~va~~~~g~ 28 (475)
++.||+|+|+++.+++++++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998553
No 283
>TIGR00269 conserved hypothetical protein TIGR00269.
Probab=27.71 E-value=30 Score=27.50 Aligned_cols=22 Identities=36% Similarity=1.013 Sum_probs=18.6
Q ss_pred ccccccccCCCCCCceeecccCCC
Q 041815 442 TLSKCNGCKRPAFGLMYRCELCNF 465 (475)
Q Consensus 442 ~~~~c~~c~~~~~~~~~~~~~~~~ 465 (475)
.+..|..||.|-++. .|+-|.+
T Consensus 79 ~~~~C~~CG~pss~~--iC~~C~l 100 (104)
T TIGR00269 79 DLRRCERCGEPTSGR--ICKACKF 100 (104)
T ss_pred cCCcCCcCcCcCCcc--ccHhhhh
Confidence 457899999999886 8888876
No 284
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=27.68 E-value=63 Score=19.56 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=11.1
Q ss_pred ceeecccCCCCCCcC
Q 041815 456 LMYRCELCNFNLHIP 470 (475)
Q Consensus 456 ~~~~~~~~~~~~~~~ 470 (475)
..|.|..|+-.|+..
T Consensus 15 T~~~C~~C~v~lC~~ 29 (32)
T PF13842_consen 15 TRYMCSKCDVPLCVE 29 (32)
T ss_pred eEEEccCCCCcccCC
Confidence 678888888666653
No 285
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=27.41 E-value=13 Score=24.31 Aligned_cols=26 Identities=38% Similarity=0.824 Sum_probs=12.9
Q ss_pred ccccCCCCCCceeecc--cCCCCCCcCCC
Q 041815 446 CNGCKRPAFGLMYRCE--LCNFNLHIPCM 472 (475)
Q Consensus 446 c~~c~~~~~~~~~~~~--~~~~~~~~~~~ 472 (475)
|..|++-. .+.++|. +|+..||..|+
T Consensus 1 C~~C~~iv-~~G~~C~~~~C~~r~H~~C~ 28 (43)
T PF08746_consen 1 CEACKEIV-TQGQRCSNRDCNVRLHDDCF 28 (43)
T ss_dssp -TTT-SB--SSSEE-SS--S--EE-HHHH
T ss_pred CcccchhH-eeeccCCCCccCchHHHHHH
Confidence 44555543 3678898 69999999885
No 286
>PRK13321 pantothenate kinase; Reviewed
Probab=27.39 E-value=2.4e+02 Score=26.39 Aligned_cols=46 Identities=11% Similarity=0.320 Sum_probs=25.9
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHH
Q 041815 199 VLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHF 245 (475)
Q Consensus 199 vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l 245 (475)
++.+|+|++++-+.++. .+.............-+.+.+-..+.+.+
T Consensus 2 iL~IDIGnT~ik~gl~~-~~~i~~~~~~~T~~~~~~~~~~~~l~~l~ 47 (256)
T PRK13321 2 LLLIDVGNTNIKLGVFD-GDRLLRSFRLPTDKSRTSDELGILLLSLF 47 (256)
T ss_pred EEEEEECCCeEEEEEEE-CCEEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 57899999999999998 32222211222223334455544444444
No 287
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=27.26 E-value=1.4e+02 Score=27.61 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHH
Q 041815 307 EELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQE 356 (475)
Q Consensus 307 ~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~ 356 (475)
+++.+.+.+.|.+.++++++..+ .-.|.|.||++-.+..+...+.
T Consensus 6 ~~l~~~~a~~i~~~i~~~i~~~~-----~~~lalsGGstp~~~y~~L~~~ 50 (233)
T TIGR01198 6 AELAEALAERIATKLQTALAERG-----QFSLALSGGRSPIALLEALAAQ 50 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC-----cEEEEECCCccHHHHHHHHhhC
Confidence 34455556666777777776532 3479999999999888887764
No 288
>COG1069 AraB Ribulose kinase [Energy production and conversion]
Probab=27.16 E-value=56 Score=33.96 Aligned_cols=21 Identities=38% Similarity=0.591 Sum_probs=18.6
Q ss_pred CCCEEEEecCCccEEEEEEEC
Q 041815 6 AAPAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~ 26 (475)
+.++||||+||..-++++++-
T Consensus 2 ~~~~iGvDvGTgSaRA~v~D~ 22 (544)
T COG1069 2 MAYVIGVDVGTGSARAGVFDC 22 (544)
T ss_pred ccEEEEEeecCCceeEEEEEc
Confidence 468999999999999999953
No 289
>TIGR03723 bact_gcp putative glycoprotease GCP. This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas
Probab=26.97 E-value=96 Score=30.18 Aligned_cols=65 Identities=14% Similarity=0.102 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHH------HHcCCcccccCCCCcchhhc
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQ------EFFNGKRLCKNINPDEAVAY 375 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~------~~~~~~~v~~~~~p~~ava~ 375 (475)
..+...+.+...|+++|++++++..+|+.|.++-|-...+++|--+. ..+ ++++ ...+-.++-|.
T Consensus 45 ~~~~H~~~l~~~i~~~l~~~~~~~~~id~iav~~GPGsftglrig~~~Ak~la~~~-~~p~-~~v~h~~aha~ 115 (314)
T TIGR03723 45 ASRAHLEAIPPLIEEALAEAGLTLSDIDAIAVTAGPGLIGALLVGVSFAKALALAL-NKPL-IGVNHLEGHLL 115 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCChHHhHHHHHHHHHHHHHHh-CCCE-EecccHHHHHH
Confidence 45667788889999999999999999999999999998998874433 334 4443 33444555443
No 290
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=26.96 E-value=89 Score=27.76 Aligned_cols=47 Identities=21% Similarity=0.364 Sum_probs=33.1
Q ss_pred CCeEEEecCCCCcHH--------------------HHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 335 VDDVVIVGGSARIPK--------------------VQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 335 i~~VvLvGG~s~~p~--------------------v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
++.|+|.||.+..|. ..+.++..+. ..-|-.++..|..+.+..+.|.
T Consensus 54 ~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~------~~~PilgiC~G~Q~l~~~~Gg~ 120 (189)
T cd01745 54 LDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALE------RGKPILGICRGMQLLNVALGGT 120 (189)
T ss_pred CCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHH------CCCCEEEEcchHHHHHHHhCCe
Confidence 689999999876443 2344444441 1237889999999999888875
No 291
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=26.51 E-value=93 Score=28.31 Aligned_cols=47 Identities=21% Similarity=0.389 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEe---cCC---CCcHHHHHHHHHHcCCc
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIV---GGS---ARIPKVQQLLQEFFNGK 361 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLv---GG~---s~~p~v~~~l~~~~~~~ 361 (475)
...++++.+.|++.++.+ +.++.++++ ||+ +-.|.|-+.+++.||++
T Consensus 104 ~~~~~~~~~~ir~~~e~~----d~~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~ 156 (216)
T PF00091_consen 104 EEALEEILEQIRKEIEKC----DSLDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKK 156 (216)
T ss_dssp HHHHHHHHHHHHHHHHTS----TTESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTS
T ss_pred cccccccccccchhhccc----cccccceecccccceeccccccccchhhhcccccc
Confidence 456677777778887765 347788876 444 45699999999999765
No 292
>PTZ00107 hexokinase; Provisional
Probab=26.32 E-value=2e+02 Score=29.74 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.6
Q ss_pred CceEEEEEeCCCceEEEEEEEeCC
Q 041815 196 EKNVLIFDLGGGTFDVSLLTIEKG 219 (475)
Q Consensus 196 ~~~vlvvD~Gggt~dvsv~~~~~~ 219 (475)
...++.+|+||+++-|..+++.++
T Consensus 73 ~G~fLAlDlGGTN~RV~~V~L~g~ 96 (464)
T PTZ00107 73 KGVYYAIDFGGTNFRAVRVSLRGG 96 (464)
T ss_pred cceEEEEecCCceEEEEEEEeCCC
Confidence 567999999999999999999864
No 293
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=25.78 E-value=2.9e+02 Score=26.57 Aligned_cols=56 Identities=20% Similarity=0.246 Sum_probs=39.3
Q ss_pred CceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHHHHHHHHHHHHHHh
Q 041815 196 EKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFDNRMVNHFIQEFKR 251 (475)
Q Consensus 196 ~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id~~l~~~l~~~~~~ 251 (475)
...++-+|+|+.++.++++......+..........-....+-+.|.+.+.+.+..
T Consensus 5 ~~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 60 (314)
T COG1940 5 AMTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQ 60 (314)
T ss_pred CcEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHh
Confidence 56789999999999999998877654444444333333357777777777666553
No 294
>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2.3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....
Probab=24.88 E-value=69 Score=25.94 Aligned_cols=46 Identities=9% Similarity=0.133 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCc--HHHHHHHHHHcC
Q 041815 314 FRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARI--PKVQQLLQEFFN 359 (475)
Q Consensus 314 ~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~--p~v~~~l~~~~~ 359 (475)
-..+...++++|+++++++.+|+.|..-|-++.. +.=.+.|++.|+
T Consensus 24 ~~~~~~~i~~al~~agi~~~~I~~i~~hg~Gt~~~D~~E~~ai~~~~~ 71 (119)
T PF02801_consen 24 GAALARAIRRALADAGISPEDIDYIEAHGTGTPLGDAAEAEAIARVFG 71 (119)
T ss_dssp HHHHHHHHHHHHHHHTS-GGGEEEEE----SSHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhhhccccccceeeeeeccccccchhhhhhhhhhhhc
Confidence 3445677899999999999999999988877764 334456777784
No 295
>PLN02914 hexokinase
Probab=24.77 E-value=1.9e+02 Score=30.08 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.5
Q ss_pred CCceEEEEEeCCCceEEEEEEEeC
Q 041815 195 SEKNVLIFDLGGGTFDVSLLTIEK 218 (475)
Q Consensus 195 ~~~~vlvvD~Gggt~dvsv~~~~~ 218 (475)
+...++.+|+||.++-|..+++.+
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g 116 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGG 116 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecC
Confidence 356799999999999999999976
No 296
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=24.39 E-value=1.1e+02 Score=27.07 Aligned_cols=46 Identities=15% Similarity=0.345 Sum_probs=33.1
Q ss_pred CCeEEEecCCC---CcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 335 VDDVVIVGGSA---RIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 335 i~~VvLvGG~s---~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
.+.|++.||-. ..+.+.+.|++ + ...-|-..+.+|..+.+..+.|.
T Consensus 44 ~d~iIi~gGp~~~~~~~~~~~~i~~-~------~~~~PiLGIClG~Qlla~~~Gg~ 92 (190)
T PRK06895 44 FSHILISPGPDVPRAYPQLFAMLER-Y------HQHKSILGVCLGHQTLCEFFGGE 92 (190)
T ss_pred CCEEEECCCCCChHHhhHHHHHHHH-h------cCCCCEEEEcHHHHHHHHHhCCe
Confidence 57999999987 44555555543 3 11247889999999999988874
No 297
>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=24.30 E-value=75 Score=31.69 Aligned_cols=38 Identities=8% Similarity=0.059 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCc
Q 041815 310 NMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARI 347 (475)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~ 347 (475)
++..+..+.+.++++|++++++..+|+.+++-+++.++
T Consensus 266 ~~~~~~~~~~~i~~~L~~~gl~~~dId~~~~Hq~~~~~ 303 (372)
T PRK07515 266 FKEVCPMVAEHIVEHLAENGLTPADVKRFWLHQANINM 303 (372)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHH
Confidence 45566777788999999999999999999999998763
No 298
>PF09297 zf-NADH-PPase: NADH pyrophosphatase zinc ribbon domain; InterPro: IPR015376 This domain has a zinc ribbon structure and is often found between two NUDIX domains.; GO: 0016787 hydrolase activity, 0046872 metal ion binding; PDB: 1VK6_A 2GB5_A.
Probab=23.88 E-value=53 Score=19.68 Aligned_cols=20 Identities=35% Similarity=0.869 Sum_probs=11.7
Q ss_pred ccccCCC----CCCceeecccCCC
Q 041815 446 CNGCKRP----AFGLMYRCELCNF 465 (475)
Q Consensus 446 c~~c~~~----~~~~~~~~~~~~~ 465 (475)
|-.||.| -.||.-.|..|+.
T Consensus 6 C~~CG~~t~~~~~g~~r~C~~Cg~ 29 (32)
T PF09297_consen 6 CGRCGAPTKPAPGGWARRCPSCGH 29 (32)
T ss_dssp -TTT--BEEE-SSSS-EEESSSS-
T ss_pred cCcCCccccCCCCcCEeECCCCcC
Confidence 6667766 4489999998875
No 299
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=23.85 E-value=1.1e+02 Score=28.03 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=28.5
Q ss_pred CCeEEEecCCCCc----------------HHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 335 VDDVVIVGGSARI----------------PKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 335 i~~VvLvGG~s~~----------------p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
+|+|+|+||.+-+ ...|+.++-.+ -.......=|-..+.+|.-+....+.|.
T Consensus 59 idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l-~~~a~~~~~PilGICrG~Q~lnv~~GGt 126 (217)
T PF07722_consen 59 IDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELAL-IRNALGRGKPILGICRGMQLLNVAFGGT 126 (217)
T ss_dssp SSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHH-HHHHCCTT--EEEETHHHHHHHHHCCSS
T ss_pred cCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHH-HHHHHhcCCCEEEEcHHHHHHHHHhCCC
Confidence 7899999999733 12334333333 1112223357889999999998777774
No 300
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=23.27 E-value=45 Score=26.50 Aligned_cols=26 Identities=19% Similarity=0.643 Sum_probs=21.7
Q ss_pred ccccccCCCCC---CceeecccCCCCCCc
Q 041815 444 SKCNGCKRPAF---GLMYRCELCNFNLHI 469 (475)
Q Consensus 444 ~~c~~c~~~~~---~~~~~~~~~~~~~~~ 469 (475)
=-|+.|+-.|+ |....|+.|+--++.
T Consensus 36 daCeiC~~~GY~q~g~~lvC~~C~~~~~~ 64 (102)
T PF10080_consen 36 DACEICGPKGYYQEGDQLVCKNCGVRFNL 64 (102)
T ss_pred EeccccCCCceEEECCEEEEecCCCEEeh
Confidence 47999988888 899999999876653
No 301
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=23.24 E-value=2.1e+02 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.061 Sum_probs=29.9
Q ss_pred CCceEEEEEeCCCceEEEEEEEeCCeEEEEEEcCCCCCchhHHH
Q 041815 195 SEKNVLIFDLGGGTFDVSLLTIEKGIFKVKATAGDTHLGGEDFD 238 (475)
Q Consensus 195 ~~~~vlvvD~Gggt~dvsv~~~~~~~~~v~~~~~~~~~GG~~id 238 (475)
+...++.+|+|.+++-+.+.+.....+.+.......--.|.-+|
T Consensus 22 ~~~~~~~iDiGSssi~~vv~~~~~~~~~~~~~~~~~vr~G~i~d 65 (267)
T PRK15080 22 ESPLKVGVDLGTANIVLAVLDEDGQPVAGALEWADVVRDGIVVD 65 (267)
T ss_pred CCCEEEEEEccCceEEEEEEcCCCCEEEEEeccccccCCCEEee
Confidence 36788999999999998887765555555555444444455555
No 302
>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction. Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.
Probab=23.19 E-value=3e+02 Score=25.20 Aligned_cols=43 Identities=5% Similarity=0.081 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhCCCCCCCCCeEEEecCCCC--cHHHHHHHHHHcC
Q 041815 317 CIKHVDMCLRTGKTDNSSVDDVVIVGGSAR--IPKVQQLLQEFFN 359 (475)
Q Consensus 317 i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~--~p~v~~~l~~~~~ 359 (475)
..+.++++|++++++..+++.|++...... .|.....+...++
T Consensus 11 ~~~A~~~al~~ag~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg 55 (254)
T cd00327 11 GFEAAEQAIADAGLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLG 55 (254)
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCccccHHHHHHHHHhC
Confidence 456778899999999999999987765433 5888888999884
No 303
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=23.16 E-value=1.5e+02 Score=27.86 Aligned_cols=41 Identities=17% Similarity=0.336 Sum_probs=29.5
Q ss_pred CCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHH
Q 041815 334 SVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAA 378 (475)
Q Consensus 334 ~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa 378 (475)
.++.|+ =|+|..|++.+.+++.++ .++ .-.||.+++|.=+.
T Consensus 172 ~~d~lI--LGCTh~P~l~~~i~~~~~-~~v-~~IDp~~~la~~~~ 212 (251)
T TIGR00067 172 LPDTVV--LGCTHFPLLKEEIEQYLP-EHV-RLVDSGVHTARRTA 212 (251)
T ss_pred CCCEEE--ECcCChHHHHHHHHHHcC-CCc-EEECCHHHHHHHHH
Confidence 356655 499999999999999984 333 34588777766544
No 304
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=23.13 E-value=69 Score=18.09 Aligned_cols=11 Identities=27% Similarity=0.938 Sum_probs=7.2
Q ss_pred CceeecccCCC
Q 041815 455 GLMYRCELCNF 465 (475)
Q Consensus 455 ~~~~~~~~~~~ 465 (475)
+-.|.|..|.|
T Consensus 14 ~v~f~CPnCG~ 24 (24)
T PF07754_consen 14 AVPFPCPNCGF 24 (24)
T ss_pred CceEeCCCCCC
Confidence 55677777764
No 305
>COG0554 GlpK Glycerol kinase [Energy production and conversion]
Probab=23.07 E-value=78 Score=32.46 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=18.6
Q ss_pred CCCEEEEecCCccEEEEEEEC
Q 041815 6 AAPAIGIDLGTTYSCVGVWQH 26 (475)
Q Consensus 6 ~~~vvGIDlGTt~s~va~~~~ 26 (475)
++++++||-|||.+++.+++.
T Consensus 4 ~~yIlAiDqGTTssRaivfd~ 24 (499)
T COG0554 4 DKYILAIDQGTTSSRAIVFDE 24 (499)
T ss_pred ccEEEEEecCCcceeEEEECC
Confidence 579999999999999998843
No 306
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=23.06 E-value=41 Score=35.51 Aligned_cols=32 Identities=19% Similarity=0.498 Sum_probs=25.9
Q ss_pred ccccccccCCCCC-CceeecccCCCCCCcCCCC
Q 041815 442 TLSKCNGCKRPAF-GLMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 442 ~~~~c~~c~~~~~-~~~~~~~~~~~~~~~~~~~ 473 (475)
.-=.|.+|+.-|+ ....-|+.||-.+|-+|-.
T Consensus 67 ~crvCe~c~~~gD~~kf~~Ck~cDvsyh~yc~~ 99 (694)
T KOG4443|consen 67 SCRVCEACGTTGDPKKFLLCKRCDVSYHCYCQK 99 (694)
T ss_pred CceeeeeccccCCcccccccccccccccccccC
Confidence 3346888887777 7788899999999999964
No 307
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=23.05 E-value=1.5e+02 Score=30.04 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=29.9
Q ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHH-HHHHhhhc
Q 041815 143 VSNAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTA-AAIAYGLD 190 (475)
Q Consensus 143 ~~~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~A-aa~~~~~~ 190 (475)
+.++|++-|+.-+-.--..+.-|+..+|.+.+.-+--..| ||++|+..
T Consensus 137 V~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTe 185 (412)
T PF00815_consen 137 VKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTE 185 (412)
T ss_dssp -SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--S
T ss_pred CCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCC
Confidence 5688888887765555577889999999999999998888 57889864
No 308
>PRK14840 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.72 E-value=6.4e+02 Score=23.65 Aligned_cols=59 Identities=15% Similarity=0.208 Sum_probs=35.9
Q ss_pred CceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHH-----------HHHHHHHHhCCCCCCCCCeEEEecCCCCcHH
Q 041815 281 TSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCI-----------KHVDMCLRTGKTDNSSVDDVVIVGGSARIPK 349 (475)
Q Consensus 281 ~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~-----------~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~ 349 (475)
++...+.+-.-++ .|+|+..+++.+...+. +.+.+.|...+. .++|-++=+||-.|+..
T Consensus 139 ~~~~~Lnla~~Yg--------gr~EI~~A~~~~~~~v~~~~~~~~~i~~~~i~~~L~~~~~--pdpDLlIRTsGe~RLSn 208 (250)
T PRK14840 139 YSRMELVLAINYG--------GKDELVRAFKKLHQDLANKKISSDDISEELISSYLDTSGL--PDPDLLIRTGGEMRVSN 208 (250)
T ss_pred CCceEEEEEecCC--------cHHHHHHHHHHHHHHHHhCCCChhhCCHHHHHHHhccCCC--CCCCEEEeCCCCccccc
Confidence 3444555544444 37788877777765432 334455543333 46899999999988643
No 309
>PF01255 Prenyltransf: Putative undecaprenyl diphosphate synthase; InterPro: IPR001441 Synonym(s): Di-trans-poly-cis-undecaprenyl-diphosphate synthase, Undecaprenyl pyrophosphate synthetase, Undecaprenyl pyrophosphate synthase, UPP synthetase Di-trans-poly-cis-decaprenylcistransferase (2.5.1.31 from EC) (UPP synthetase) generates undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) []. This bacterial enzyme is also found in archaebacteria and in a number of uncharacterised proteins including some from yeasts. This entry also matches related enzymes that transfer alkyl groups, such as dehydrodolichyl diphosphate synthase.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 2D2R_B 2DTN_B 1F75_B 1X07_A 2E9D_A 1JP3_A 3QAS_A 1X09_A 1V7U_B 2E9A_A ....
Probab=22.71 E-value=4.9e+02 Score=23.84 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=33.1
Q ss_pred cCCceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHH-----------HHHHHHHHhCCCCCCCCCeEEEecCCCCc
Q 041815 279 SSTSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCI-----------KHVDMCLRTGKTDNSSVDDVVIVGGSARI 347 (475)
Q Consensus 279 s~~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~-----------~~i~~~l~~~~~~~~~i~~VvLvGG~s~~ 347 (475)
+.++...+.+-.-++ .|+|+..+++.+.+... +.+.+.|..... + +|-++=+||-.|+
T Consensus 111 ~~n~~l~Lnia~~Yg--------gr~eI~~a~~~~~~~~~~~~~~~~~i~~~~i~~~L~~~~~-P--pDLlIRtsGe~RL 179 (223)
T PF01255_consen 111 KNNTGLTLNIAINYG--------GRDEIVDAARKLAEEVQSGKLSPEDIDEELISSHLYTPDL-P--PDLLIRTSGEQRL 179 (223)
T ss_dssp TTSSSEEEEEEECE---------HHHHHHHHHHHHHHHHHTTSSGGGG-SHHHHHHTSTTTTS-----SEEEEETT--C-
T ss_pred ccCcceeEEEEecCC--------cHHHHHHHHHHhhhhhccCccccccCCHHHHHhhccccCC-C--CCEEEEeCCCccc
Confidence 345556666554444 47888888888876332 445555555444 2 7888889988664
No 310
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=22.64 E-value=1.3e+02 Score=26.42 Aligned_cols=48 Identities=15% Similarity=0.292 Sum_probs=34.0
Q ss_pred CCCeEEEecCCCC---cHHHHHHHHHHcCCcccccCCCCcchhhchHHHHHHHHcCC
Q 041815 334 SVDDVVIVGGSAR---IPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQAAVLSGN 387 (475)
Q Consensus 334 ~i~~VvLvGG~s~---~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~~~ 387 (475)
+.+.|+|.||... .....+.+++.+. . .-|-.++.+|..+.+..+.|.
T Consensus 39 ~~dgiil~GG~~~~~~~~~~~~~~~~~~~-~-----~~PvlGIC~G~Q~l~~~~Gg~ 89 (178)
T cd01744 39 DPDGIFLSNGPGDPALLDEAIKTVRKLLG-K-----KIPIFGICLGHQLLALALGAK 89 (178)
T ss_pred CCCEEEECCCCCChhHhHHHHHHHHHHHh-C-----CCCEEEECHHHHHHHHHcCCc
Confidence 4789999999643 3444555555552 1 147889999999999888774
No 311
>PRK09604 UGMP family protein; Validated
Probab=22.59 E-value=1.6e+02 Score=28.86 Aligned_cols=64 Identities=11% Similarity=0.136 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHH------HHHcCCcccccCCCCcchhhc
Q 041815 310 NMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLL------QEFFNGKRLCKNINPDEAVAY 375 (475)
Q Consensus 310 ~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l------~~~~~~~~v~~~~~p~~ava~ 375 (475)
.+...+.+...++++|+.++++..+++.|.++-|-...+.++--+ ...+ ++++ ...+-.++-|.
T Consensus 48 ~~~H~~~l~~~i~~~L~~~~~~~~did~iavt~GPG~~tglrvg~~~Ak~La~~~-~ipl-~~v~h~~~ha~ 117 (332)
T PRK09604 48 SRAHVENIVPLIEEALKEAGLTLEDIDAIAVTAGPGLVGALLVGVSFAKALALAL-NKPL-IGVNHLEGHLL 117 (332)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcHHhHHHHHHHHHHHHHHh-CCCE-EeecCHHHHHH
Confidence 355677788899999999999999999999999988888886443 3344 4443 33344444444
No 312
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=22.47 E-value=82 Score=27.73 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=16.0
Q ss_pred EEEecCCccEEEEEEECC
Q 041815 10 IGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 10 vGIDlGTt~s~va~~~~g 27 (475)
||||.|.|+|=+.+..++
T Consensus 2 igIDvGGT~TD~v~~d~~ 19 (176)
T PF05378_consen 2 IGIDVGGTFTDAVLLDED 19 (176)
T ss_pred eeEecCCCcEEEEEEeCC
Confidence 799999999999888765
No 313
>PF13831 PHD_2: PHD-finger; PDB: 2L43_A 2KU3_A.
Probab=22.24 E-value=18 Score=22.65 Aligned_cols=17 Identities=29% Similarity=0.807 Sum_probs=10.9
Q ss_pred ceeecccCCCCCCcCCC
Q 041815 456 LMYRCELCNFNLHIPCM 472 (475)
Q Consensus 456 ~~~~~~~~~~~~~~~~~ 472 (475)
....|..|+...|..|.
T Consensus 3 ~ll~C~~C~v~VH~~CY 19 (36)
T PF13831_consen 3 PLLFCDNCNVAVHQSCY 19 (36)
T ss_dssp EEEE-SSS--EEEHHHH
T ss_pred ceEEeCCCCCcCChhhC
Confidence 45788889999998873
No 314
>TIGR02707 butyr_kinase butyrate kinase. This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.
Probab=22.18 E-value=1.7e+02 Score=29.06 Aligned_cols=29 Identities=14% Similarity=0.361 Sum_probs=23.0
Q ss_pred EEEEEeCCCceEEEEEEEeCCeEEEEEEc
Q 041815 199 VLIFDLGGGTFDVSLLTIEKGIFKVKATA 227 (475)
Q Consensus 199 vlvvD~Gggt~dvsv~~~~~~~~~v~~~~ 227 (475)
+||++.|++++.+++++.....++.....
T Consensus 2 il~in~Gsts~k~alf~~~~~~~~~~~~~ 30 (351)
T TIGR02707 2 ILVINPGSTSTKLAVFEDERPLFEETLRH 30 (351)
T ss_pred EEEEecCchhheEEEEeCCCceeeeeecC
Confidence 79999999999999998877655544433
No 315
>PLN02362 hexokinase
Probab=22.12 E-value=2.8e+02 Score=29.10 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=21.9
Q ss_pred CCceEEEEEeCCCceEEEEEEEeCC
Q 041815 195 SEKNVLIFDLGGGTFDVSLLTIEKG 219 (475)
Q Consensus 195 ~~~~vlvvD~Gggt~dvsv~~~~~~ 219 (475)
+...++.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 3567999999999999999999864
No 316
>PF00814 Peptidase_M22: Glycoprotease family; InterPro: IPR000905 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M22 (clan MK). The type example being O-sialoglycoprotein endopeptidase (3.4.24.57 from EC) from Pasteurella haemolytica (Mannheimia haemolytica). O-Sialoglycoprotein endopeptidase is secreted by the bacterium P. haemolytica, and digests only proteins that are heavily sialylated, in particular those with sialylated serine and threonine residues []. Substrate proteins include glycophorin A and leukocyte surface antigens CD34, CD43, CD44 and CD45 [, ]. Removal of glycosylation, by treatment with neuraminidase, completely negates susceptibility to O-sialoglycoprotein endopeptidase digestion [, ]. Sequence similarity searches have revealed other members of the M22 family, from yeast, Mycobacterium, Haemophilus influenzae and the cyanobacterium Synechocystis []. The zinc-binding and catalytic residues of this family have not been determined, although the motif HMEGH may be a zinc-binding region [].; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 2A6A_A 2GEL_G 2GEM_B 1OKJ_B 3ENO_A 3EN9_B 2VWB_B 3ENH_B 2IVO_D 2IVP_A ....
Probab=22.10 E-value=73 Score=30.20 Aligned_cols=69 Identities=14% Similarity=0.120 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHH------HHcCCcccccCCCCcchhhchHHH
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQ------EFFNGKRLCKNINPDEAVAYGAAV 379 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~------~~~~~~~v~~~~~p~~ava~Gaa~ 379 (475)
+-+...+.+...++++|++++++..++|.|.++-|-+...+|+--+. ..+ ++++ .+.+..++-+..+.+
T Consensus 25 a~r~H~~~L~~~i~~~l~~~~~~~~did~iavt~GPGsftgLrvG~~~Ak~La~~~-~~Pl-i~v~~l~a~a~~~~~ 99 (268)
T PF00814_consen 25 ASRQHSENLPPLIEELLKEAGISLSDIDAIAVTRGPGSFTGLRVGLSFAKGLALAL-NIPL-IGVSHLEAHALSARL 99 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTS-GGGESEEEEEEESS-HHHHHHHHHHHHHHHHHT-T--E-EEEEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEecCCCcccccHHHHHHHHHHHHHh-CCCe-EeeccHHHHHHhHhh
Confidence 34566778889999999999999999999999988888888874433 233 4333 334555555554443
No 317
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=22.10 E-value=6.7e+02 Score=23.61 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=35.6
Q ss_pred CceeEEEEeccccCccceEEEcHHHHHHHHHHHHHHHH---------------HHHHHHHHhCCCCCCCCCeEEEecCCC
Q 041815 281 TSQTTIEIDSLYEGIDFSSVMTRARFEELNMDLFRKCI---------------KHVDMCLRTGKTDNSSVDDVVIVGGSA 345 (475)
Q Consensus 281 ~~~~~~~i~~~~~~~~~~~~itr~~~~~~~~~~~~~i~---------------~~i~~~l~~~~~~~~~i~~VvLvGG~s 345 (475)
++...+.+-.-+++ |+|+..+++.++++.. +.+.+.|...+. .++|-++=+||-.
T Consensus 141 ~~~~~Lnia~~Ygg--------r~EI~~A~~~~~~~~~~~~~~~~~~~~~i~e~~i~~~L~~~~~--P~pDLlIRTsGE~ 210 (256)
T PRK14828 141 NDGIKVNVAVGYGG--------RQEIVDAVRSLLTEHKDKGTSIDELAESVTVDAISTHLYTGGQ--PDPDLVIRTSGEQ 210 (256)
T ss_pred CCCcEEEEEecCCC--------HHHHHHHHHHHHHHHHhCCCChhhccccCCHHHHHHHhccCCC--CCCCEEEeCCCCC
Confidence 34445555444443 7888887777765532 334555543333 4689999999987
Q ss_pred CcH
Q 041815 346 RIP 348 (475)
Q Consensus 346 ~~p 348 (475)
|+.
T Consensus 211 RLS 213 (256)
T PRK14828 211 RLS 213 (256)
T ss_pred ccc
Confidence 764
No 318
>PLN02192 3-ketoacyl-CoA synthase
Probab=21.53 E-value=2.1e+02 Score=29.94 Aligned_cols=54 Identities=7% Similarity=0.113 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEec-CCCCcHHHHHHHHHHcC
Q 041815 306 FEELNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVG-GSARIPKVQQLLQEFFN 359 (475)
Q Consensus 306 ~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvG-G~s~~p~v~~~l~~~~~ 359 (475)
+++..++...-+.+.++++|+++++++.+||.|+... +....|.+-.+|.+.++
T Consensus 169 ~~~~~~Ea~~~~~~Aa~~aL~kaGi~p~DIDiLIv~~S~~~~~PSlaa~I~n~lG 223 (511)
T PLN02192 169 MAEARKEAETVMFGAIDQLLAKTSVKPKDIGILIVNCSLFNPTPSLSAMVINHYK 223 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCCCCCCchHHHHHHHHhC
Confidence 4455555555567788899999999999999887653 22457999999999993
No 319
>cd01400 6PGL 6PGL: 6-Phosphogluconolactonase (6PGL) subfamily; 6PGL catalyzes the second step of the oxidative phase of the pentose phosphate pathway, the hydrolyzation of 6-phosphoglucono-1,5-lactone (delta form) to 6-phosphogluconate. 6PGL is thought to guard against the accumulation of the delta form of the lactone, which may be toxic through its reaction with endogenous cellular nucleophiles.
Probab=21.39 E-value=1.3e+02 Score=27.50 Aligned_cols=44 Identities=16% Similarity=0.150 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHH
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEF 357 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~ 357 (475)
+...+.+.+.+.+++.+++.+ .-.+.|.||++-.+..+......
T Consensus 3 l~~~~a~~i~~~i~~~i~~~~-----~~~l~lsGGstp~~~y~~L~~~~ 46 (219)
T cd01400 3 LAEALADRIAEALAAAIAKRG-----RFSLALSGGSTPKPLYELLAAAP 46 (219)
T ss_pred HHHHHHHHHHHHHHHHHHhcC-----eEEEEECCCccHHHHHHHhcccc
Confidence 445556667777777776532 34889999999998888877654
No 320
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=21.33 E-value=2.2e+02 Score=25.43 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHH
Q 041815 311 MDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEF 357 (475)
Q Consensus 311 ~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~ 357 (475)
+.+.+.+.+.+.+.+++.+ .-.|.|.||+|-.+..+......
T Consensus 3 ~~~a~~i~~~i~~~i~~~~-----~~~i~LsgGstp~~~y~~L~~~~ 44 (199)
T PF01182_consen 3 QAVAEAIAEAIEEAIAERG-----RAVIALSGGSTPKPLYQELAKLH 44 (199)
T ss_dssp HHHHHHHHHHHHHHHHHCS-----SEEEEE--SCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC-----CEEEEEcCCHHHHHHHHHHhhhc
Confidence 4455666677777776632 35889999999988888877765
No 321
>PRK13318 pantothenate kinase; Reviewed
Probab=21.30 E-value=3.8e+02 Score=25.09 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=15.6
Q ss_pred EEEEEeCCCceEEEEEE
Q 041815 199 VLIFDLGGGTFDVSLLT 215 (475)
Q Consensus 199 vlvvD~Gggt~dvsv~~ 215 (475)
++.+|+|++.+-+.++.
T Consensus 2 iL~IDIGnT~iK~al~d 18 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYE 18 (258)
T ss_pred EEEEEECCCcEEEEEEE
Confidence 57899999999999998
No 322
>cd02198 YjgH_like YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.99 E-value=1.8e+02 Score=23.16 Aligned_cols=48 Identities=19% Similarity=0.331 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCe--EEEecCCCCcHHHHHHHHHHcC
Q 041815 312 DLFRKCIKHVDMCLRTGKTDNSSVDD--VVIVGGSARIPKVQQLLQEFFN 359 (475)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~--VvLvGG~s~~p~v~~~l~~~~~ 359 (475)
.-...+.+.|+..|+.+|.+.++|-. |+|+.-....+.+.+...++|+
T Consensus 33 ~Q~~~~~~ni~~~L~~aG~~~~dvvk~~vyl~~~~~~~~~~~~~~~~~f~ 82 (111)
T cd02198 33 AQFRLAFQNLGAVLEAAGCSFDDVVELTTFHVDMAAHLPAFAAVKDEYFK 82 (111)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHEEEEEEEEeccHHHHHHHHHHHHHHcC
Confidence 34455566677778888887766544 3667655678888888899995
No 323
>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=20.91 E-value=2.2e+02 Score=27.53 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHc
Q 041815 309 LNMDLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFF 358 (475)
Q Consensus 309 ~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~ 358 (475)
++...+..+.+.++++|++++++..+|+.+++-.++ +.+.+.+.+.+
T Consensus 219 ~~~~~~~~~~~~i~~~L~~~g~~~~did~~~~h~~~---~~~~~~~~~~l 265 (325)
T PRK12879 219 VFKWAVRTMPKGARQVLEKAGLTKDDIDWVIPHQAN---LRIIESLCEKL 265 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEECCCC---HHHHHHHHHHc
Confidence 344445667788999999999999999999998776 34456777777
No 324
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.58 E-value=2.4e+02 Score=27.06 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=39.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHHHcCCceeeeeechHHHHHHhhhccCCC----------CCceEEEEEeCCCceE
Q 041815 145 NAVVTVPAYFTDSQRQATKDAGAMAGLNVLKIISEPTAAAIAYGLDRKAT----------SEKNVLIFDLGGGTFD 210 (475)
Q Consensus 145 ~~vitVP~~~~~~~r~~l~~a~~~agl~~~~~i~Ep~Aaa~~~~~~~~~~----------~~~~vlvvD~Gggt~d 210 (475)
+.|+|--. .+-...+.+-+-.-..|++.-+++-+|+-+|+.|+++.... +++.-+=+=+-+|||.
T Consensus 252 H~VLswt~-~D~N~qk~LNrkllk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTN 326 (403)
T COG2069 252 HVVLSWTQ-MDVNMQKTLNRKLLKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTN 326 (403)
T ss_pred ceEEEeec-cChHHHHHHHHHHHHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcc
Confidence 56665321 12222333333334457999999999999999999875432 3444455555555554
No 325
>TIGR01865 cas_Csn1 CRISPR-associated protein, Csn1 family. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.
Probab=20.54 E-value=83 Score=35.06 Aligned_cols=20 Identities=20% Similarity=0.380 Sum_probs=17.4
Q ss_pred CEEEEecCCccEEEEEEECC
Q 041815 8 PAIGIDLGTTYSCVGVWQHD 27 (475)
Q Consensus 8 ~vvGIDlGTt~s~va~~~~g 27 (475)
++||+|+||+.+.-|+.+.+
T Consensus 2 y~LGLDiGt~SvGWAVv~~d 21 (805)
T TIGR01865 2 YILGLDIGIASVGWAIVEDD 21 (805)
T ss_pred ceeEEeecccceeEEEEecc
Confidence 68999999999999998543
No 326
>PRK12419 riboflavin synthase subunit beta; Provisional
Probab=20.25 E-value=1e+02 Score=26.58 Aligned_cols=60 Identities=23% Similarity=0.166 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCCCCeEEEecCCCCcHHHHHHHHHHcCCcccccCCCCcchhhchHHHHH
Q 041815 312 DLFRKCIKHVDMCLRTGKTDNSSVDDVVIVGGSARIPKVQQLLQEFFNGKRLCKNINPDEAVAYGAAVQA 381 (475)
Q Consensus 312 ~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~v~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 381 (475)
.+.+++.+-..+.|++.+.+..++ .|+-|=|+=-+|++-+.+.+. .+.|-.|++|+++.|
T Consensus 23 ~It~~Ll~gA~~~l~~~G~~~~~i-~v~~VPGA~EiP~~a~~l~~~---------~~yDaiIaLG~VIrG 82 (158)
T PRK12419 23 DIVDQARKGFVAEIAARGGAASQV-DIFDVPGAFEIPLHAQTLAKT---------GRYAAIVAAALVVDG 82 (158)
T ss_pred HHHHHHHHHHHHHHHHcCCCccce-EEEECCcHHHHHHHHHHHHhc---------CCCCEEEEEEEEEcC
Confidence 334445555556667777766666 667788888999998877642 134666777776665
No 327
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=20.15 E-value=2.8e+02 Score=24.37 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=16.8
Q ss_pred EEEeCCCceEEEEEEEeCCeE
Q 041815 201 IFDLGGGTFDVSLLTIEKGIF 221 (475)
Q Consensus 201 vvD~Gggt~dvsv~~~~~~~~ 221 (475)
=+|+||..||+.++.-..+.+
T Consensus 3 gIDvGGT~TD~v~~d~~~~~~ 23 (176)
T PF05378_consen 3 GIDVGGTFTDAVLLDEDTGVV 23 (176)
T ss_pred eEecCCCcEEEEEEeCCCCEE
Confidence 389999999999888764444
No 328
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.09 E-value=2.4e+02 Score=21.44 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=16.7
Q ss_pred eEEEEEeCCCceEEEEEEEeC
Q 041815 198 NVLIFDLGGGTFDVSLLTIEK 218 (475)
Q Consensus 198 ~vlvvD~Gggt~dvsv~~~~~ 218 (475)
.+|-+|+|+..+-++++....
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~g 22 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDETG 22 (99)
T ss_pred cEEEEccCCCeEEEEEECCCC
Confidence 378899999988888886443
No 329
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.08 E-value=57 Score=22.51 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.6
Q ss_pred ccccccCCCC--CCceeecccCCCCCCcCCCC
Q 041815 444 SKCNGCKRPA--FGLMYRCELCNFNLHIPCMF 473 (475)
Q Consensus 444 ~~c~~c~~~~--~~~~~~~~~~~~~~~~~~~~ 473 (475)
.+|+.|+++= ....-.|.+|.=--|-.|..
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~ 37 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE 37 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHHHh
Confidence 5899999997 68899999999999998874
Done!