BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041816
         (396 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Vitis vinifera]
 gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
          Length = 627

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 193/376 (51%), Positives = 253/376 (67%), Gaps = 17/376 (4%)

Query: 21  RCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQG 80
           RC  SS F H  +P S    +   D  + A           DR  LE FLK  CKS    
Sbjct: 23  RCKLSSLFEHPHRPISPGPISLTKDTVSNAP----------DRGQLENFLKSNCKSG--- 69

Query: 81  DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
               I  +EAF +F+++++M+P+PP ++SFN L G +AK K Y  V+SL+KR++  GL P
Sbjct: 70  ---HIKRSEAFSVFNHLIDMQPTPP-ISSFNTLLGAVAKIKRYFDVISLYKRMSLIGLAP 125

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D  T NILINC+C + +V  G  VLG +LR   +P+ V FTSL+KGLC  SRI EA  L 
Sbjct: 126 DFITLNILINCYCNLNKVDFGLAVLGEMLRRGHSPNTVTFTSLVKGLCLGSRISEATGLL 185

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            K+   G +PNV+TY TL+NGLC TG+T++A+ L EEM NGNG FGV  KPN V Y TII
Sbjct: 186 RKMVRMGYRPNVVTYGTLLNGLCMTGNTMLAVKLHEEMLNGNGGFGVTIKPNLVCYCTII 245

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           D LCK+G +DK KELFL+MK + I+PDVV Y+S+IHG C+   W  A  L  EM+D+GV 
Sbjct: 246 DSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVH 305

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+VVTFNV++D LCK GKM+EA+ LL+LMI RG +P+T T++TL+DGFCL GR++ A++L
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 381 FVSMESMGCKHTVFSY 396
           FVSMES G +    SY
Sbjct: 366 FVSMESKGIETDAVSY 381



 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 162/299 (54%), Gaps = 12/299 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +++ +   +  T  ++    LF  +   G+ P++ T+N+LI+  CK G++  
Sbjct: 267 RGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDALCKAGKMEE 326

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  +++   +PD   + +LI G C E RI +A  LF  +++ G + + ++Y+ LIN
Sbjct: 327 ANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVLIN 386

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFL 277
           G C++G  + A  L+ EM         +CK   P  +TY T++ GL +EG V  A  LF 
Sbjct: 387 GYCKSGRMVEAKKLYREM---------MCKEIMPTVITYNTLLTGLFREGKVRDAWNLFG 437

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +MK  ++ P+  TYN L+ G C  N  +EA  L   + +   QP +  FN ++D LCK  
Sbjct: 438 EMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPSIQIFNCLIDGLCKAR 497

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K++ A  L   +   G+ PN  T++ ++ G C +G++ +AK+LF+ ME  GC   + ++
Sbjct: 498 KIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTF 556



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 142/280 (50%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L K    +    L K +   G  PD +TYN LI+ FC  GR+     +
Sbjct: 306 PNVVTFNVLIDALCKAGKMEEANHLLKLMIQRGESPDTFTYNTLIDGFCLEGRIDDARDL 365

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +       DAV++  LI G C   R++EA  L+ ++      P VITY+TL+ GL R
Sbjct: 366 FVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFR 425

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A NLF EM   +        P + TY  ++DGLCK   + +A ELF  +++ + 
Sbjct: 426 EGKVRDAWNLFGEMKVHD------LTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDF 479

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +  +N LI G C A     A  L   +  +G++P+V+T+ V++  LCK+G+++ A  
Sbjct: 480 QPSIQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKD 539

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L   M  +G  PN  TF+TLM GFC    +    EL   M
Sbjct: 540 LFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEM 579



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/305 (33%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF-----PD 141
           +EA  +   M+ M   P  +T   LL G L  T +    + L +  LN  G F     P+
Sbjct: 179 SEATGLLRKMVRMGYRPNVVTYGTLLNG-LCMTGNTMLAVKLHEEMLNGNGGFGVTIKPN 237

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           L  Y  +I+  CK G +  G  +   +     +PD VA++S+I G+C   R   A  LF 
Sbjct: 238 LVCYCTIIDSLCKDGLIDKGKELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFN 297

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G  PNV+T++ LI+ LC+ G    A +L + M    G+      P+T TY T+ID
Sbjct: 298 EMVDEGVHPNVVTFNVLIDALCKAGKMEEANHLLKLMIQ-RGE-----SPDTFTYNTLID 351

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G C EG +D A++LF+ M+ K I  D V+YN LI+G+C +    EA  L  EMM + + P
Sbjct: 352 GFCLEGRIDDARDLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMP 411

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            V+T+N ++  L + GK+ +A  L   M +  + P + T++ L+DG C    ++ A ELF
Sbjct: 412 TVITYNTLLTGLFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELF 471

Query: 382 VSMES 386
             +E+
Sbjct: 472 HYLEN 476



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M+    SP   T +N L          D    LF  + S G+  D  +YN+L
Sbjct: 326 EANHLLKLMIQRGESPDTFT-YNTLIDGFCLEGRIDDARDLFVSMESKGIETDAVSYNVL 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GR+     +   ++     P  + + +L+ GL  E ++ +A  LF ++K    
Sbjct: 385 INGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNLFGEMKVHDL 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P   TY+ L++GLC+  H   A+ LF  + N +       +P+   +  +IDGLCK   
Sbjct: 445 TPESCTYNILLDGLCKNNHLSEAMELFHYLENHD------FQPSIQIFNCLIDGLCKARK 498

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A+ELF ++  + + P+V+TY  +IHG C +     A  L + M ++G  P++VTFN 
Sbjct: 499 IEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNT 558

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +M   C+N +M +   LL+ M  +  +P+ ST S ++D
Sbjct: 559 LMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVD 596



 Score = 40.4 bits (93), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/103 (22%), Positives = 44/103 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ ++   L K+   +    LF  +   G  P+L T+N L+  FC+   +     +
Sbjct: 516 PNVITYTVMIHGLCKSGQLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVEL 575

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L  +    F+PDA   + ++  L  + +  E   L     A G
Sbjct: 576 LQEMAEKDFSPDASTISIVVDLLSKDEKYREYLHLLPTFPAQG 618


>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 618

 Score =  340 bits (873), Expect = 6e-91,   Method: Compositional matrix adjust.
 Identities = 175/376 (46%), Positives = 240/376 (63%), Gaps = 8/376 (2%)

Query: 25  SSSFPHTRKPKSSISKNEPSD-PTTTAKLKESLRLTV---KDRASLEQFLKERCKSSGQG 80
           S SF     P S+ S   PS  P T++    +  L     ++  S    L    ++   G
Sbjct: 9   SPSFKPNLSPLSTHSSTIPSSIPQTSSTHHPNPILPAAFNREEISFHHPLSLFLRNCKTG 68

Query: 81  DITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           +ITAI   +AF  FD M+   P PP ++SFN L G LAK  HY  + SL+  +   GL P
Sbjct: 69  NITAI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSP 124

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           DL+T +IL NC C + RVS     +  ILR  + P+ V +T+LIKGLC E RI EA  LF
Sbjct: 125 DLFTLSILANCLCNVNRVSEALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEATRLF 184

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            +++  GC PN +TY TLI GLC+TG+  +AL L +EM N   ++GV CKP  +TY+ II
Sbjct: 185 LRMQKLGCTPNAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIII 244

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DGLCK G  D+AKELF +MK + + PDV++Y++LIHGFC A  W+++  L  EM+DQGVQ
Sbjct: 245 DGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQ 304

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD+VTF+V++D LCK GK+ EA +LLE+MI RG+ PN  T+++L+DGFC+ G +N A+EL
Sbjct: 305 PDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSAREL 364

Query: 381 FVSMESMGCKHTVFSY 396
           F+SM S G +    SY
Sbjct: 365 FLSMPSKGLEPDEISY 380



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 157/308 (50%), Gaps = 15/308 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +    +   CK   +G +T     EA  + + M+  R   P L ++N L        
Sbjct: 306 DMVTFSVLIDTLCK---EGKVT-----EAKKLLEVMIQ-RGIVPNLITYNSLIDGFCMVG 356

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
             ++   LF  + S GL PD  +Y  LIN +CK  +V     +   +L+   +P+   + 
Sbjct: 357 DLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSPNVTTYG 416

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +L+KGL  + ++ +A  LF  +K +G   N   Y   ++GLC+      A+ LF E+ + 
Sbjct: 417 TLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSY 476

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
           N K       N   Y+ +IDGLCK G ++ A ELF ++  + + PDVVTYN +IHGFC  
Sbjct: 477 NFKL------NIENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKV 530

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
              + AN L  +M + G  PD++ +N ++   C+  K++E  +LL  M+ + V+PN ++ 
Sbjct: 531 GQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKLLHKMVQKDVSPNAASC 590

Query: 362 STLMDGFC 369
           + ++D  C
Sbjct: 591 TIVVDMLC 598



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ L         +D    LF  +   G+ PD+ T+++LI+  CK G+V+    +
Sbjct: 270 PDVISYSTLIHGFCCAGKWDQSKHLFDEMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKL 329

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++    P+ + + SLI G C    +  A  LF  + + G +P+ I+Y+TLING C+
Sbjct: 330 LEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCK 389

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T     A+NL+ EM        V   PN  TY T++ GL ++G V  AK+LF  MK   +
Sbjct: 390 TWKVKEAMNLYNEM------LQVGKSPNVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGV 443

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + +   Y   + G C  +   EA  L  E+     + ++  ++ ++D LCK GK++ A  
Sbjct: 444 SANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNIENYSCLIDGLCKAGKLETAWE 503

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E +   G+ P+  T++ ++ GFC  G+V++A  LF  ME  GC   + +Y
Sbjct: 504 LFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAY 555



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 98/315 (31%), Positives = 165/315 (52%), Gaps = 13/315 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF-----PD 141
           +EA  +F  M  +  +P  +T   L+ G L +T + +  L L K  LN    +     P 
Sbjct: 178 SEATRLFLRMQKLGCTPNAVTYGTLIKG-LCQTGNVNIALKLHKEMLNDASQYGVNCKPG 236

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + TY+I+I+  CK+GR      +   +      PD +++++LI G C   +  ++  LF 
Sbjct: 237 VITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQSKHLFD 296

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G +P+++T+S LI+ LC+ G    A  L E M     + G+V  PN +TY ++ID
Sbjct: 297 EMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMI----QRGIV--PNLITYNSLID 350

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G C  G ++ A+ELFL M  K + PD ++Y +LI+G+C      EA  L  EM+  G  P
Sbjct: 351 GFCMVGDLNSARELFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEMLQVGKSP 410

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +V T+  ++  L + GK+ +A +L  +M   GV+ N+  +   +DG C    +  A ELF
Sbjct: 411 NVTTYGTLLKGLFQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELF 470

Query: 382 VSMESMGCKHTVFSY 396
             ++S   K  + +Y
Sbjct: 471 NELKSYNFKLNIENY 485



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 22/98 (22%), Positives = 48/98 (48%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N++     K    D    LF+++   G  PD+  YN L+  FC+  ++     +
Sbjct: 515 PDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEVIKL 574

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           L ++++   +P+A + T ++  LC + +  +   L  K
Sbjct: 575 LHKMVQKDVSPNAASCTIVVDMLCKDEKYKKFVDLLPK 612


>gi|255559961|ref|XP_002520999.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539836|gb|EEF41416.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 628

 Score =  331 bits (849), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 166/331 (50%), Positives = 225/331 (67%), Gaps = 7/331 (2%)

Query: 66  LEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
           LEQFL+  CKS   GD T    +EA   F+ M++M+ +P  L+ FN LFG LAK K Y  
Sbjct: 73  LEQFLEINCKS---GDFTL---HEALHFFNQMIHMQTTPA-LSRFNNLFGALAKKKQYLH 125

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
           V+S+  R+NS GL  +  + NIL+NC C + RV  GFVV G ILR  + P+   FT+L+K
Sbjct: 126 VISMCGRMNSIGLLKNFISLNILLNCLCSVKRVFEGFVVFGMILRKGYRPNTRTFTNLVK 185

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           GLC E +I EA  +F  +  F C+P+ IT   LI+GLCRTG+T  AL L E M NGN  F
Sbjct: 186 GLCLEGKIGEAVRVFKIMGVFDCRPSAITCGVLISGLCRTGNTCNALKLHEAMINGNSDF 245

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G+ CKP  V+Y+ IID LCK+G V++AKE F++MK+K I P+VVTY SL+HG C A++W 
Sbjct: 246 GINCKPTVVSYSCIIDSLCKDGLVERAKEFFVEMKEKGIFPNVVTYTSLLHGLCSASEWE 305

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           EA  L IEM+D G+ PDVVTF+V++  LCK GK+ EAS L +LM+ R V P+T T++ L+
Sbjct: 306 EAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGLFDLMVQRYVEPSTRTYNILI 365

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +G+CL G V+  K++F+SM +  C+H   SY
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDAGSY 396



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 139/304 (45%), Gaps = 22/304 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L     ++    LF  +   GL PD+ T+++LI   CK+G+V     +
Sbjct: 286 PNVVTYTSLLHGLCSASEWEEAKRLFIEMVDHGLLPDVVTFSVLIGALCKVGKVKEASGL 345

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    P    +  LI+G C    + E   +F  +    C+ +  +YS L+   C+
Sbjct: 346 FDLMVQRYVEPSTRTYNILIEGYCLAGMVDEGKKIFLSMVNKRCQHDAGSYSILMKAYCK 405

Query: 225 TGHTIVALNLFEEMAN-------------GNGK--FGVVCKPNTV-------TYTTIIDG 262
                 A+ L+ EM +             G+ +  FG +   + V        Y   +DG
Sbjct: 406 DSEVHGAMILYREMMDRGIQPTVITYSKVGDARKLFGEIQFQDMVLDSISYSIYNVYLDG 465

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G V +A ++F  +++     +V  +NSLI+G C +     A  L   + ++ +QPD
Sbjct: 466 LCKNGCVSEALDVFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNEALQPD 525

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVT+ +++  LCK G+  +A  L   M  +G  PN  TF+TLM G CL        EL  
Sbjct: 526 VVTYTIMIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLH 585

Query: 383 SMES 386
            M +
Sbjct: 586 KMAA 589



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 14/268 (5%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G   A   +E   IF  M+N R       S+++L     K       + L++ +   G+
Sbjct: 366 EGYCLAGMVDEGKKIFLSMVNKRCQHDA-GSYSILMKAYCKDSEVHGAMILYREMMDRGI 424

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + TY+ + +     G +    +VL  I  S        +   + GLC    + EA  
Sbjct: 425 QPTVITYSKVGDARKLFGEIQFQDMVLDSISYS-------IYNVYLDGLCKNGCVSEALD 477

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F  L+      NV  +++LING+CR+    +A  LF  + N         +P+ VTYT 
Sbjct: 478 VFYGLENCKFASNVAIFNSLINGMCRSEKLEIAWELFNRLCNE------ALQPDVVTYTI 531

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I GLCK G   KA +LFL+M++K   P+VVT+N+L+ G C  ++  +   LL +M  + 
Sbjct: 532 MIYGLCKVGQPQKAYDLFLEMEEKGCAPNVVTFNTLMRGLCLNSERPKIVELLHKMAARK 591

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + PD  T  ++MD L K+    E   LL
Sbjct: 592 LSPDASTLLIVMDILLKDENYHECLNLL 619


>gi|449520323|ref|XP_004167183.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  324 bits (830), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 164/334 (49%), Positives = 221/334 (66%), Gaps = 8/334 (2%)

Query: 63  RASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
           +  L  FL   CK+   G+ITA    +AF  F  M+   P+PP L+SF  L   LAK KH
Sbjct: 60  QQQLSMFL-HNCKT---GNITA---TQAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKH 111

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           Y  V  L+ ++  +G+ PD  T NIL+NC C + RV  G  V+  ILR  + PD V +T+
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIKGLC E RI +AA LFT+++  GC PN ITY TL+ GLCRTG+  +AL L +EM N +
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
             +G+  KP  ++Y+ IID LCK+   D+A++LF +MK + + P V++Y SLIHGFC   
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGG 291

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
            W EA  L  EM++QGVQP+VVTFNV++D LCK GK+ EA  LLE+MI RG+ PN  T++
Sbjct: 292 KWEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 351

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L++GFCL G +N A+ELFVSM S GC+  V  Y
Sbjct: 352 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 385



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 162/309 (52%), Gaps = 13/309 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF-----PD 141
           ++A  +F  M  +  +P  +T   L+ G L +T +    L L +  LN + L+     P 
Sbjct: 183 SKAALLFTRMQKLGCTPNAITYGTLMKG-LCRTGNISIALKLHQEMLNDSSLYGINFKPV 241

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + +Y+I+I+  CK  R      +   +     TP  +++TSLI G C   +  EA  LF 
Sbjct: 242 VISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGKWEEAKRLFN 301

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G +PNV+T++ LI+ LC+ G  I A +L E M     + G+V  PN +TY ++I+
Sbjct: 302 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMI----QRGIV--PNLLTYNSLIE 355

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G C  G ++ A+ELF+ M  K   PDV+ Y  LI+G+C  +   EA  L   M+  G +P
Sbjct: 356 GFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRP 415

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           DV T+  ++  L + GK+ +A +L  +M + G+  +   +   ++G C  G +  A ELF
Sbjct: 416 DVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELF 475

Query: 382 VSMESMGCK 390
             ++S   K
Sbjct: 476 NKLKSYNIK 484



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M     +P  ++  +L+ G     K ++    LF  + + G+ P++ T+N+
Sbjct: 259 DEARDLFEEMKVQGMTPTVISYTSLIHGFCCGGK-WEEAKRLFNEMVNQGVQPNVVTFNV 317

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G+V     +L  +++    P+ + + SLI+G C    +  A  LF  + + G
Sbjct: 318 LIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKG 377

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+VI Y+ LING C+T     A+ L+      NG   V  +P+  TY  ++ GL + G
Sbjct: 378 CEPDVICYTVLINGYCKTSKVEEAMKLY------NGMLQVGKRPDVKTYGALLTGLFQGG 431

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  AK+LF  MK   I  D+  Y   ++G C      EA  L  ++    ++ D+  FN
Sbjct: 432 KVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIECFN 491

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCK GK++ A  L E +    + P+  T++ ++  FC  G+V  A  LF  ME  
Sbjct: 492 CLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKN 551

Query: 388 GCKHTVFSY 396
           GC     +Y
Sbjct: 552 GCTPDKITY 560



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 7/267 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+  R   P L ++N L          ++   LF  + S G  PD+  Y +L
Sbjct: 330 EAKDLLEVMIQ-RGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVL 388

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  +V     +   +L+    PD   + +L+ GL    ++ +A  LF  +K +G 
Sbjct: 389 INGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGI 448

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++  Y   +NGLC+ G    A+ LF ++ + N K  + C      +  +IDGLCK G 
Sbjct: 449 PGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIEC------FNCLIDGLCKAGK 502

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A ELF ++  + + PDVVTYN +IH FC      +AN L  +M   G  PD +T+  
Sbjct: 503 LETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYAT 562

Query: 329 IMDELCKNGKMDEASRLLELMILRGVN 355
           ++    ++ K+++   LL +M+ R V+
Sbjct: 563 LIRGFFESKKLEKVVELLHMMVQRDVS 589


>gi|449520325|ref|XP_004167184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 605

 Score =  323 bits (827), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 158/328 (48%), Positives = 217/328 (66%), Gaps = 7/328 (2%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
           F    CK+   G++TA     A   F  M+   P+P  L+SFN L   LAK KHY  V S
Sbjct: 38  FFLRHCKT---GNVTA---THALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFS 90

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L+ ++  +GL  D  T NIL+NC C + R+  GF     ILR  ++P+ V + +LIKGLC
Sbjct: 91  LYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC 150

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E RI EA  LF +++  GC P+V+TY TLI GLC TG+  +AL L +EM N   ++ + 
Sbjct: 151 MEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEIN 210

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           CKPN +TY  I+DGLCK G  D+AK+LF +MK + + P +++YNSLIHGFC A  W E+ 
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESK 270

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM+DQG+QPD+VTFNV++D LCK GK+ EA +LL +MI  G+ P+  T+++L++GF
Sbjct: 271 RLLDEMLDQGLQPDMVTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGF 330

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C+ G +N A+ELFVSM S GC+  V SY
Sbjct: 331 CMVGDLNSARELFVSMPSKGCEPDVISY 358



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M   +   P + S+N L         ++    L   +   GL PD+ T+N+
Sbjct: 232 DEAKQLFEEM-KTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNV 290

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G+V     +LG ++ S   PD V + SLI+G C    +  A  LF  + + G
Sbjct: 291 LIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKG 350

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+VI+Y+ LING  +T     A+ L+ EM        V  +PN +TY +++ G+   G
Sbjct: 351 CEPDVISYNVLINGYSKTLKVEEAMKLYNEM------LLVGKRPNVITYDSLLKGIFLAG 404

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD AK+LF  MK   I  +  TY   + G C  +   EA  L  E+     + ++   N
Sbjct: 405 KVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLEIENLN 464

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCK GK++ A  L E +   G  PN  T++ ++ GFC  G+V+ A  L   ME+ 
Sbjct: 465 CLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQKMEAN 524

Query: 388 GCKHTVFSY 396
           GC   + +Y
Sbjct: 525 GCTPDIITY 533



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L          ++   LF  + S G  PD+ +YN+LIN + K  +V     +
Sbjct: 318 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 377

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ + + SL+KG+    ++ +A  LF+ +KA G   N  TY   ++GLC+
Sbjct: 378 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 437

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ LF E+ + N K  +           +IDGLCK G ++ A ELF ++ ++  
Sbjct: 438 NDCLFEAMKLFTELKSSNFKLEIE------NLNCLIDGLCKAGKLETAWELFEKLSNEGH 491

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTY  +IHGFC     ++AN L+ +M   G  PD++T+N +M    ++ K++E  +
Sbjct: 492 EPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQ 551

Query: 345 LLELMILRGVNPNTSTFSTLMD 366
           LL  M  + V+P+  T S ++D
Sbjct: 552 LLHRMAQKDVSPDAITCSIVVD 573



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 150/288 (52%), Gaps = 12/288 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF-----PDLYTYNILINCFCKMGRV 158
           P + ++  L   L  T + +  L L +  LN    +     P++ TYNI+++  CK+GR 
Sbjct: 172 PDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEINCKPNVITYNIIVDGLCKVGRE 231

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +   +      P  +++ SLI G C   +  E+  L  ++   G +P+++T++ L
Sbjct: 232 DEAKQLFEEMKTQGMIPSIISYNSLIHGFCCAGKWEESKRLLDEMLDQGLQPDMVTFNVL 291

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+ LC+ G  I A  L   M       G+V  P+ VTY ++I+G C  G ++ A+ELF+ 
Sbjct: 292 IDTLCKEGKVIEAKKLLGVMIES----GIV--PDLVTYNSLIEGFCMVGDLNSARELFVS 345

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K   PDV++YN LI+G+       EA  L  EM+  G +P+V+T++ ++  +   GK
Sbjct: 346 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGK 405

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +D+A +L  +M   G+  N+ T+   +DG C    +  A +LF  ++S
Sbjct: 406 VDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKS 453


>gi|449462477|ref|XP_004148967.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 597

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 160/334 (47%), Positives = 218/334 (65%), Gaps = 16/334 (4%)

Query: 63  RASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
           +  L  FL   CK+   G+ITAI   +AF  F  M+   P+PP L+SF  L   LAK KH
Sbjct: 60  QQQLSMFL-HNCKT---GNITAI---QAFQFFHLMMYSNPTPP-LSSFTHLLSGLAKIKH 111

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           Y  V  L+ ++  +G+ PD  T NIL+NC C + RV  G  V+  ILR  + PD V +T+
Sbjct: 112 YSQVFYLYNQMRLSGISPDCCTLNILLNCLCNVNRVGEGLAVMAGILRRGYIPDIVTYTT 171

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIKGLC E RI +AA LFT+++  GC PN ITY TL+ GLCRTG+  +AL L +EM N +
Sbjct: 172 LIKGLCMEHRISKAALLFTRMQKLGCTPNAITYGTLMKGLCRTGNISIALKLHQEMLNDS 231

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
             +G+  KP  ++Y+ IID LCK+   D+A++LF +MK + + P V++Y SL+       
Sbjct: 232 SLYGINFKPVVISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLM------- 284

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
            W EA  L  EM++QGVQP+VVTFNV++D LCK GK+ EA  LLE+MI RG+ PN  T++
Sbjct: 285 -WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYN 343

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L++GFCL G +N A+ELFVSM S GC+  V  Y
Sbjct: 344 SLIEGFCLVGDLNSARELFVSMPSKGCEPDVICY 377



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 141/274 (51%), Gaps = 6/274 (2%)

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++    LF  + + G+ P++ T+N+LI+  CK G+V     +L  +++    P+ + + S
Sbjct: 285 WEEAKRLFNEMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNLLTYNS 344

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+G C    +  A  LF  + + GC+P+VI Y+ LING C+T     A+ L+      N
Sbjct: 345 LIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLY------N 398

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G   V  +P+  TY  ++ GL + G V  AK+LF  MK   I  D+  Y   ++G C   
Sbjct: 399 GMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNG 458

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  L  ++    ++ D+  FN ++D LCK GK++ A  L E +    + P+  T++
Sbjct: 459 CLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPDVVTYN 518

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++  FC  G+V  A  LF  ME  GC     +Y
Sbjct: 519 IMIHEFCRGGQVVKANILFQKMEKNGCTPDKITY 552



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 154/302 (50%), Gaps = 7/302 (2%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           T++   EA  +F+ M+N +   P + +FN+L   L K         L + +   G+ P+L
Sbjct: 281 TSLMWEEAKRLFNEMVN-QGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMIQRGIVPNL 339

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            TYN LI  FC +G ++    +   +      PD + +T LI G C  S++ EA  L+  
Sbjct: 340 LTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNG 399

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           +   G +P+V TY  L+ GL + G    A  LF  M      +G+    +   Y   ++G
Sbjct: 400 MLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMK----VYGI--PGDLYIYGIFLNG 453

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G + +A ELF ++K  NI  D+  +N LI G C A     A  L  ++  + +QPD
Sbjct: 454 LCKNGCLFEAMELFNKLKSYNIKLDIECFNCLIDGLCKAGKLETAWELFEKLPQEELQPD 513

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVT+N+++ E C+ G++ +A+ L + M   G  P+  T++TL+ GF  + ++    EL  
Sbjct: 514 VVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYATLIRGFFESKKLEKVVELLH 573

Query: 383 SM 384
            M
Sbjct: 574 MM 575



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 159/309 (51%), Gaps = 21/309 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF-----PD 141
           ++A  +F  M  +  +P  +T   L+ G L +T +    L L +  LN + L+     P 
Sbjct: 183 SKAALLFTRMQKLGCTPNAITYGTLMKG-LCRTGNISIALKLHQEMLNDSSLYGINFKPV 241

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + +Y+I+I+  CK  R      +   +     TP  +++TSL+          EA  LF 
Sbjct: 242 VISYSIIIDALCKDRREDEARDLFEEMKVQGMTPTVISYTSLMWE--------EAKRLFN 293

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G +PNV+T++ LI+ LC+ G  I A +L E M     + G+V  PN +TY ++I+
Sbjct: 294 EMVNQGVQPNVVTFNVLIDVLCKEGKVIEAKDLLEVMI----QRGIV--PNLLTYNSLIE 347

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G C  G ++ A+ELF+ M  K   PDV+ Y  LI+G+C  +   EA  L   M+  G +P
Sbjct: 348 GFCLVGDLNSARELFVSMPSKGCEPDVICYTVLINGYCKTSKVEEAMKLYNGMLQVGKRP 407

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           DV T+  ++  L + GK+ +A +L  +M + G+  +   +   ++G C  G +  A ELF
Sbjct: 408 DVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGIPGDLYIYGIFLNGLCKNGCLFEAMELF 467

Query: 382 VSMESMGCK 390
             ++S   K
Sbjct: 468 NKLKSYNIK 476



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 80/267 (29%), Positives = 135/267 (50%), Gaps = 7/267 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+  R   P L ++N L          ++   LF  + S G  PD+  Y +L
Sbjct: 322 EAKDLLEVMIQ-RGIVPNLLTYNSLIEGFCLVGDLNSARELFVSMPSKGCEPDVICYTVL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  +V     +   +L+    PD   + +L+ GL    ++ +A  LF  +K +G 
Sbjct: 381 INGYCKTSKVEEAMKLYNGMLQVGKRPDVKTYGALLTGLFQGGKVGDAKKLFGVMKVYGI 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++  Y   +NGLC+ G    A+ LF ++ + N K  + C      +  +IDGLCK G 
Sbjct: 441 PGDLYIYGIFLNGLCKNGCLFEAMELFNKLKSYNIKLDIEC------FNCLIDGLCKAGK 494

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A ELF ++  + + PDVVTYN +IH FC      +AN L  +M   G  PD +T+  
Sbjct: 495 LETAWELFEKLPQEELQPDVVTYNIMIHEFCRGGQVVKANILFQKMEKNGCTPDKITYAT 554

Query: 329 IMDELCKNGKMDEASRLLELMILRGVN 355
           ++    ++ K+++   LL +M+ R V+
Sbjct: 555 LIRGFFESKKLEKVVELLHMMVQRDVS 581


>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
          Length = 653

 Score =  280 bits (716), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 194/311 (62%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T +EA   F+ ML+ +P PP    FN L   +AKTKH+ T+LSL ++++S G+ PD+YT 
Sbjct: 50  TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN  C + RV   F  L +IL+    PDA  FT+LI+GLC E +I EA  LF K+  
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+PN V ++T+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  +F +M  K I+P++VTYNSLIHG C   +W     L+ EM+D  + PDV T
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N ++D LCK G + EA  ++++MI RGV PN  T++ LMDG CL   V+ A ++F +M 
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342

Query: 386 SMGCKHTVFSY 396
              C   V SY
Sbjct: 343 HKDCVANVISY 353



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  F+ L   L K +      ++F  + + G+ P++ TYN LI+  CK+    H   +
Sbjct: 208 PNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTL 267

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ S   PD     +++  LC E  + EA  +   +   G +PNV+TY+ L++G C 
Sbjct: 268 MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCL 327

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                VA+ +F+ M + +      C  N ++Y T+I+G CK   VDKA  LF +M  + +
Sbjct: 328 RNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+LIHG C+     +A  L  EM+ +G  PD+VT+  + D LCKN  +D+A  
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 441

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +     +P+   ++T++DG C  G +  A++LF ++ S G +  V++Y
Sbjct: 442 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 493



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF IF  M+    SP  + ++N L   L K   +  V +L   +  + + PD++T N +
Sbjct: 228 EAFNIFSEMITKGISPN-IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G V+    V+  ++     P+ V + +L+ G C  + +  A  +F  +    C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             NVI+Y+TLING C+      A+ LFEEM+           PNTVTY T+I GLC  G 
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGR 400

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M  +   PD+VTY +L    C     ++A  LL  +      PD+  +  
Sbjct: 401 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 460

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+D +C+ G++++A  L   +  +G+ PN  T++ ++ G C  G +  A +LF  M   G
Sbjct: 461 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520

Query: 389 C 389
           C
Sbjct: 521 C 521



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M++ R   P + ++N L          D  + +F  +       ++ +YN L
Sbjct: 298 EAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+  V     +   + R   TP+ V + +LI GLC   R+ +A +LF ++ A G 
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY TL + LC+  H   A+ L + +   N        P+   YTTI+DG+C+ G 
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN------WDPDIQIYTTILDGMCRAGE 470

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  K + P+V TYN +IHG C      EA+ L  EM   G  P+  T+N+
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I     +N +      LLE M+ RG + + ST + L+      G     K++ 
Sbjct: 531 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583


>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 588

 Score =  280 bits (716), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 194/311 (62%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T +EA   F+ ML+ +P PP    FN L   +AKTKH+ T+LSL ++++S G+ PD+YT 
Sbjct: 50  TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 108

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN  C + RV   F  L +IL+    PDA  FT+LI+GLC E +I EA  LF K+  
Sbjct: 109 AIVINSLCHLNRVDFAFSALAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHLFDKMIG 168

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+PN V ++T+ID LCK
Sbjct: 169 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPNVVVFSTLIDSLCK 222

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  +F +M  K I+P++VTYNSLIHG C   +W     L+ EM+D  + PDV T
Sbjct: 223 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 282

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N ++D LCK G + EA  ++++MI RGV PN  T++ LMDG CL   V+ A ++F +M 
Sbjct: 283 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 342

Query: 386 SMGCKHTVFSY 396
              C   V SY
Sbjct: 343 HKDCVANVISY 353



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  F+ L   L K +      ++F  + + G+ P++ TYN LI+  CK+    H   +
Sbjct: 208 PNVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTL 267

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ S   PD     +++  LC E  + EA  +   +   G +PNV+TY+ L++G C 
Sbjct: 268 MNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCL 327

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                VA+ +F+ M + +      C  N ++Y T+I+G CK   VDKA  LF +M  + +
Sbjct: 328 RNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCKIQSVDKAMYLFEEMSRQEL 381

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+LIHG C+     +A  L  EM+ +G  PD+VT+  + D LCKN  +D+A  
Sbjct: 382 TPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMA 441

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +     +P+   ++T++DG C  G +  A++LF ++ S G +  V++Y
Sbjct: 442 LLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTY 493



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF IF  M+    SP  + ++N L   L K   +  V +L   +  + + PD++T N +
Sbjct: 228 EAFNIFSEMITKGISPN-IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 286

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G V+    V+  ++     P+ V + +L+ G C  + +  A  +F  +    C
Sbjct: 287 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 346

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             NVI+Y+TLING C+      A+ LFEEM+           PNTVTY T+I GLC  G 
Sbjct: 347 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGR 400

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M  +   PD+VTY +L    C     ++A  LL  +      PD+  +  
Sbjct: 401 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 460

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+D +C+ G++++A  L   +  +G+ PN  T++ ++ G C  G +  A +LF  M   G
Sbjct: 461 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520

Query: 389 C 389
           C
Sbjct: 521 C 521



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M++ R   P + ++N L          D  + +F  +       ++ +YN L
Sbjct: 298 EAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 356

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+  V     +   + R   TP+ V + +LI GLC   R+ +A +LF ++ A G 
Sbjct: 357 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 416

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY TL + LC+  H   A+ L + +   N        P+   YTTI+DG+C+ G 
Sbjct: 417 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSN------WDPDIQIYTTILDGMCRAGE 470

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  K + P+V TYN +IHG C      EA+ L  EM   G  P+  T+N+
Sbjct: 471 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 530

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I     +N +      LLE M+ RG + + ST + L+      G     K++ 
Sbjct: 531 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 583


>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
          Length = 671

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 141/311 (45%), Positives = 191/311 (61%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T + A   F+ ML M+P PP    FN L   +AK KH+ T+LSL  +++S G+ P++YT 
Sbjct: 41  TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +ILIN FC + RV   F VL +IL+    PD   FT+LI+G+C E +I EA  LF K+  
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMIG 159

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+TY TLINGLC+ G+T  A+ L   M   N      C+PN   Y TIID LCK
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCK 213

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  K I+PD+ TYNSLIH  C   +W     LL EM+D  + PDVV+
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++D LCK GK+ EA  +++ MI RGV PN  T++ LMDG CL   ++ A ++F +M 
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMV 333

Query: 386 SMGCKHTVFSY 396
             GC   V SY
Sbjct: 334 CKGCMPNVISY 344



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 170/321 (52%), Gaps = 14/321 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F  M+    SP   T +N L   L     +  V +L   +  + + PD+ ++N +
Sbjct: 219 EAFNLFSEMVTKGISPDIFT-YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G+V+    V+ ++++    P+ V +T+L+ G C  S + EA  +F  +   GC
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 209 KPNVITYSTLINGLCRTGHTIVA-------------LNLFEEMANGNGKFGVVCKPNTVT 255
            PNVI+Y+TLING C+      A             LN+ E +   +      C PN ++
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVKVFDTMVCKGCMPNVIS 397

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+I+G CK   +DKA  LF +M  + + PD VTY++LIHG C+     +A  L  EM+
Sbjct: 398 YNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMV 457

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
                P++VT+ +++D LCKN  + EA  LL+ +    ++P+    +  +DG C  G + 
Sbjct: 458 ACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELE 517

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A++LF ++ S G +  V++Y
Sbjct: 518 AARDLFSNLSSKGLQPDVWTY 538



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 161/350 (46%), Gaps = 42/350 (12%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKT 120
           D  S    +   CK   +G +T     EA  + D M+     P  +T   L+ G CL   
Sbjct: 270 DVVSFNTVVDALCK---EGKVT-----EAHDVVDKMIQRGVEPNVVTYTALMDGHCL--L 319

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF------------------ 162
              D  + +F  +   G  P++ +YN LIN +CK+ R+                      
Sbjct: 320 SEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEA 379

Query: 163 --VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             V    + + C  P+ +++ +LI G C   RI +A  LF ++      P+ +TYSTLI+
Sbjct: 380 VKVFDTMVCKGCM-PNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIH 438

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCK--PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           GLC       A+ LF EM        V C   PN VTY  ++D LCK  ++ +A  L   
Sbjct: 439 GLCHVERLQDAIALFHEM--------VACSQIPNLVTYRILLDYLCKNRYLAEAMALLKA 490

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           ++  N++PD+   N  I G C A +   A  L   +  +G+QPDV T++++++ LC+ G 
Sbjct: 491 IEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGL 550

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +DEAS+L   M   G   N   ++T+  GF      + A +L   M + G
Sbjct: 551 LDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARG 600



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 90/322 (27%), Positives = 153/322 (47%), Gaps = 30/322 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK------HY-------------DTVLS 128
           +EA  +FD M+  +   P + S+N L     K +      HY             D  + 
Sbjct: 323 DEAVKVFDTMV-CKGCMPNVISYNTLINGYCKIQRIDKAIHYTXLMDXXCCYLNMDEAVK 381

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +F  +   G  P++ +YN LIN +CK+ R+     + G + R    PD V +++LI GLC
Sbjct: 382 VFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLC 441

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              R+ +A ALF ++ A    PN++TY  L++ LC+  +   A+ L + +   N      
Sbjct: 442 HVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSN------ 495

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+       IDG+C+ G ++ A++LF  +  K + PDV TY+ +I+G C     +EA+
Sbjct: 496 LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEAS 555

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L  EM + G   +   +N I     +N +   A +LL+ M+ RG + + ST +  +   
Sbjct: 556 KLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADASTMTLFVKML 615

Query: 369 CLTGRVNHAKELFVSMESMGCK 390
              G     K++  +    GCK
Sbjct: 616 SDDGLDQSLKQILRN----GCK 633


>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
          Length = 442

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 193/311 (62%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ +L+M P PP +  F  L   +AK KHY TVLSL  +++S G+ P++YT 
Sbjct: 25  TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 83

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + RV   F VL +IL+    PD   FT+LI+GLC E +I EA  LF K+  
Sbjct: 84  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 143

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 144 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 197

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF QM  + I+PD+ TY SL+H  C   +W     LL +M++  + PDVV 
Sbjct: 198 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 257

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI RGV P+  T++TLMDG CL   ++ A ++F  M 
Sbjct: 258 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 317

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 318 RKGFAPDVISY 328



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 155/339 (45%), Gaps = 65/339 (19%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   +L +   P P T   L+ G   + K     L LF ++   G  P++ TY  LI
Sbjct: 99  AFSVLAKILKLGHQPDPTTFTTLIRGLCVEGK-IGEALHLFDKMIDEGFQPNVVTYGTLI 157

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G  S    +L  + +    PD V +TS+I  LC + ++ EA  LF+++   G  
Sbjct: 158 NGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGIS 217

Query: 210 PNVITYSTLINGLC---RTGHTIVALN------------LFEEMANGNGKFGVV------ 248
           P++ TY++L++ LC      H    LN            +F  + +   K G V      
Sbjct: 218 PDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEI 277

Query: 249 --------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH---- 296
                    +P+ VTYTT++DG C +  +D+A ++F  M  K   PDV++Y +LI+    
Sbjct: 278 VDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYTTLINAGKK 337

Query: 297 ---GFCYAND---------------------------WNEANCLLIEMMDQGVQPDVVTF 326
              G     +                           + +   LL EM++  + P+VV F
Sbjct: 338 DGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGRTLLNEMVNSKIMPNVVIF 397

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPN-TSTFSTL 364
           + ++D LCK GK+ EA  ++++MI RGV PN    F T+
Sbjct: 398 STVVDALCKEGKVMEAHDVVDMMIKRGVEPNAVKVFDTM 436



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 63/231 (27%), Positives = 113/231 (48%), Gaps = 33/231 (14%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EAF +F  M+    SP   T  +L+     L + KH   V +L  ++ ++ + PD+  ++
Sbjct: 203 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKH---VTTLLNQMVNSKILPDVVIFS 259

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  CK G+V+    ++  +++    PD V +T+L+ G C +S + EA  +F  +   
Sbjct: 260 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 319

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALN----LFEEMANG--NGKFGVVCK---------- 250
           G  P+VI+Y+TLIN   + G  +V+L     L +E  +    G   V+ K          
Sbjct: 320 GFAPDVISYTTLINAGKKDGGGLVSLQEVIGLVKETPDAVKGGAVEVIRKDKMKLFEKGR 379

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
                       PN V ++T++D LCKEG V +A ++   M  + + P+ V
Sbjct: 380 TLLNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNAV 430


>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 586

 Score =  276 bits (706), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 193/311 (62%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP    FN L   +AKTK Y TV SL  +++S G+ PD+YT 
Sbjct: 49  TLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 107

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+   F VL +IL+    PD   FT+LI+GLC E +I +A  LF K+  
Sbjct: 108 NILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 167

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 168 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 221

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  + I+PD+ TY SLIH  C   +W     LL +M++  + PDVV 
Sbjct: 222 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI 281

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI+RGV PN  T++ LMDG CL   ++ A ++F +M 
Sbjct: 282 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 341

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 342 HNGYAPNVISY 352



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 159/292 (54%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K +      +LF ++   G+ PD++TY  LI+  C +    H   +
Sbjct: 207 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTL 266

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++ S   PD V F++++  LC E +I EA  +   +   G +PNV+TY+ L++G C 
Sbjct: 267 LNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 326

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M + NG       PN ++Y T+I+G CK   +DKA  LF +M  K +
Sbjct: 327 QSEMDEAVKVFDTMVH-NGY-----APNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 380

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+L+H  C+     +A  L  EM+  G  PD+ T+ +++D LCK   +DEA  
Sbjct: 381 IPNTVTYNTLMH-XCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 439

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    ++P+   ++ ++DG C  G +  A+++F ++ S G +  V +Y
Sbjct: 440 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTY 491



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 13/291 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G IT     EA  + D M+ +R   P + ++N L          D  + +F  +   G 
Sbjct: 292 EGKIT-----EAHDVVDMMI-IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 345

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++ +YN LIN +CK+ R+     +   + +    P+ V + +L+   C   R+ +A A
Sbjct: 346 APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMH-XCHVGRLQDAIA 404

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF ++ A G  P++ TY  L++ LC+  H   A+ L + +   N        P+   YT 
Sbjct: 405 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN------MDPDIQIYTI 458

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDG+C+ G ++ A+++F  +  K + P+V TY  +I+G C     +EAN L +EM   G
Sbjct: 459 VIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 518

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
             PD  T+N I   L +N +   A +LL+ M+ RG + + ST + L++  C
Sbjct: 519 CSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 569



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 159/336 (47%), Gaps = 45/336 (13%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EAF +F  M+    SP   T  +L+     L + KH   V +L  ++ ++ + PD+  ++
Sbjct: 227 EAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKH---VTTLLNQMINSKIMPDVVIFS 283

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  CK G+++    V+  ++     P+ V + +L+ G C +S + EA  +F  +   
Sbjct: 284 TVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN 343

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI------- 259
           G  PNVI+Y+TLING C+      A  LFEEM            PNTVTY T+       
Sbjct: 344 GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKE------LIPNTVTYNTLMHXCHVG 397

Query: 260 ---------------------------IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
                                      +D LCK+  +D+A  L   ++  N++PD+  Y 
Sbjct: 398 RLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYT 457

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            +I G C A +   A  +   +  +G++P+V T+ ++++ LC+ G +DEA++L   M   
Sbjct: 458 IVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGN 517

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G +P+  T++T+  G         A +L   M + G
Sbjct: 518 GCSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARG 553


>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
          Length = 585

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 192/311 (61%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP    FN L   +AKTK Y TV SL  +++S G+ PD+YT 
Sbjct: 47  TLDDALSSFNRMLHMHP-PPSTVDFNRLLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTL 105

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R    F VL +IL+    PD   FT+LI+GLC E +I +A  LF K+  
Sbjct: 106 NILINSFCHLNRPGFAFSVLAKILKLGLQPDTATFTTLIRGLCVEGKIGDALHLFDKMIG 165

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 166 EGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 219

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  + I+PD+ TY SLIH  C   +W     LL +M++  + PDVV 
Sbjct: 220 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVI 279

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI+RGV PN  T++ LMDG CL   ++ A ++F +M 
Sbjct: 280 FSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMV 339

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 340 HNGYAPNVISY 350



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 160/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K +      +LF ++   G+ PD++TY  LI+  C +    H   +
Sbjct: 205 PDVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTL 264

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++ S   PD V F++++  LC E +I EA  +   +   G +PNV+TY+ L++G C 
Sbjct: 265 LNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCL 324

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M + NG       PN ++Y T+I+G CK   +DKA  LF +M  K +
Sbjct: 325 QSEMDEAVKVFDTMVH-NGY-----APNVISYNTLINGYCKIQRMDKATYLFEEMCQKEL 378

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+L+HG C+     +A  L  EM+  G  PD+ T+ +++D LCK   +DEA  
Sbjct: 379 IPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMA 438

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    ++P+   ++ ++DG C  G +  A+++F ++ S G +  V +Y
Sbjct: 439 LLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTY 490



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 159/303 (52%), Gaps = 11/303 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EAF +F  M+    SP   T  +L+     L + KH   V +L  ++ ++ + PD+  ++
Sbjct: 225 EAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKH---VTTLLNQMINSKIMPDVVIFS 281

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  CK G+++    V+  ++     P+ V + +L+ G C +S + EA  +F  +   
Sbjct: 282 TVVDALCKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHN 341

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNVI+Y+TLING C+      A  LFEEM            PNTVTY T++ GLC  
Sbjct: 342 GYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQKE------LIPNTVTYNTLMHGLCHV 395

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A  LF +M      PD+ TY  L+   C  +  +EA  LL  +    + PD+  +
Sbjct: 396 GRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIY 455

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +++D +C+ G+++ A  +   +  +G+ PN  T++ +++G C  G ++ A +LF+ M+ 
Sbjct: 456 TIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDG 515

Query: 387 MGC 389
            GC
Sbjct: 516 NGC 518



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 150/291 (51%), Gaps = 12/291 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G IT     EA  + D M+ +R   P + ++N L          D  + +F  +   G 
Sbjct: 290 EGKIT-----EAHDVVDMMI-IRGVEPNVVTYNALMDGHCLQSEMDEAVKVFDTMVHNGY 343

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++ +YN LIN +CK+ R+     +   + +    P+ V + +L+ GLC   R+ +A A
Sbjct: 344 APNVISYNTLINGYCKIQRMDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIA 403

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF ++ A G  P++ TY  L++ LC+  H   A+ L + +   N        P+   YT 
Sbjct: 404 LFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSN------MDPDIQIYTI 457

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDG+C+ G ++ A+++F  +  K + P+V TY  +I+G C     +EAN L +EM   G
Sbjct: 458 VIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 517

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
             PD  T+N I   L +N +   A +LL+ M+ RG + + ST + L++  C
Sbjct: 518 CSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC 568


>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 744

 Score =  275 bits (703), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 193/311 (62%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ +L+M P PP +  F  L   +AK KHY TVLSL  +++S G+ P++YT 
Sbjct: 36  TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + RV   F VL +IL+    PD   FT+LI+GLC E +I EA  LF K+  
Sbjct: 95  NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 154

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 155 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 208

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF QM  + I+PD+ TY SL+H  C   +W     LL +M++  + PDVV 
Sbjct: 209 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 268

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI RGV P+  T++TLMDG CL   ++ A ++F  M 
Sbjct: 269 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 328

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 329 RKGFAPDVISY 339



 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K +      +LF ++   G+ PD++TY  L++  C +    H   +
Sbjct: 194 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 253

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++ S   PD V F++++  LC E ++ EA  +   +   G +P+V+TY+TL++G C 
Sbjct: 254 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 313

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M            P+ ++YTT+I+G CK   +DKA  LF +M  K  
Sbjct: 314 QSEMDEAVKVFDMMVRKG------FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 367

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TYN+L+HG C+     +A  L  EM+ +G  PD+VT+++++D LCKN  ++EA  
Sbjct: 368 IPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMA 427

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    +NP+   ++ ++DG C  G +  A++LF ++ S G   +V++Y
Sbjct: 428 LLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTY 479



 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 162/303 (53%), Gaps = 11/303 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EAF +F  M+    SP   T  +L+     L + KH   V +L  ++ ++ + PD+  ++
Sbjct: 214 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKH---VTTLLNQMVNSKILPDVVIFS 270

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  CK G+V+    ++  +++    PD V +T+L+ G C +S + EA  +F  +   
Sbjct: 271 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 330

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+VI+Y+TLING C+      A+ LFEEM            P+T TY T++ GLC  
Sbjct: 331 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE------WIPDTKTYNTLMHGLCHV 384

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A  LF +M  +   PD+VTY+ L+   C      EA  LL  +    + PD+  +
Sbjct: 385 GRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVY 444

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+I+D +C+ G+++ A  L   +  +G++P+  T++ ++ G C  G +N A +LF+ M+ 
Sbjct: 445 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG 504

Query: 387 MGC 389
             C
Sbjct: 505 NDC 507



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 144/279 (51%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  I D M+     P  +T   L+ G CL      D  + +F  +   G  PD+ +Y  
Sbjct: 284 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCL--QSEMDEAVKVFDMMVRKGFAPDVISYTT 341

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ ++     +   + R  + PD   + +L+ GLC   R+ +A ALF ++ A G
Sbjct: 342 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVARG 401

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++TYS L++ LC+  H   A+ L + +   N        P+   Y  IIDG+C+ G
Sbjct: 402 QMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN------LNPDIQVYNIIIDGMCRAG 455

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A++LF  +  K ++P V TYN +IHG C     NEAN L +EM      PD  T+N
Sbjct: 456 ELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYN 515

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I     +N +   A +LLE M+ RG + + ST + L++
Sbjct: 516 TIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTLLVE 554



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 143/285 (50%), Gaps = 10/285 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+  +   P + S+  L     K    D  + LF+ +      PD  TYN 
Sbjct: 318 DEAVKVFDMMVR-KGFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNT 376

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C +GR+     +   ++     PD V ++ L+  LC    + EA AL   ++A  
Sbjct: 377 LMHGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASN 436

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++  Y+ +I+G+CR G    A +LF  +++          P+  TY  +I GLCK G
Sbjct: 437 LNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKG------LHPSVWTYNIMIHGLCKRG 490

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A +LF++M   + +PD  TYN++  GF   N+   A  LL EM+ +G   DV T  
Sbjct: 491 LLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTT 550

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           ++++ L  +G +D++S  L L +L     +   F  + +GF L G
Sbjct: 551 LLVEMLSDDG-LDQSSCFLMLSVLS--EDDRRYFIFIPEGFDLLG 592


>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
          Length = 2021

 Score =  275 bits (702), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 139/311 (44%), Positives = 193/311 (62%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ +L+M P PP +  F  L   +AK KHY TVLSL  +++S G+ P++YT 
Sbjct: 45  TLDDALSSFNRLLHMHP-PPSIVDFAKLLTSIAKMKHYSTVLSLSTQMDSFGVPPNVYTL 103

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + RV   F VL +IL+    PD   FT+LI+GLC E +I EA  LF K+  
Sbjct: 104 NILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEGKIGEALHLFDKMID 163

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G+T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 164 EGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGN------CQPDVVIYTSIIDSLCK 217

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF QM  + I+PD+ TY SL+H  C   +W     LL +M++  + PDVV 
Sbjct: 218 DRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVNSKILPDVVI 277

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI RGV P+  T++TLMDG CL   ++ A ++F  M 
Sbjct: 278 FSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMV 337

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 338 RKGFAPDVISY 348



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K +      +LF ++   G+ PD++TY  L++  C +    H   +
Sbjct: 203 PDVVIYTSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 262

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++ S   PD V F++++  LC E ++ EA  +   +   G +P+V+TY+TL++G C 
Sbjct: 263 LNQMVNSKILPDVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCL 322

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M            P+ ++YTT+I+G CK   +DKA  LF +M  K  
Sbjct: 323 QSEMDEAVKVFDMMVRKG------FAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEW 376

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TYN+L++G C+     +A  L  EM+ +G  PD+VT+++++D LCKN  ++EA  
Sbjct: 377 IPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMA 436

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    +NP+   ++ ++DG C  G +  A++LF ++ S G   +V++Y
Sbjct: 437 LLKAIEASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTY 488



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 163/303 (53%), Gaps = 11/303 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EAF +F  M+    SP   T  +L+     L + KH  T+L+   ++ ++ + PD+  ++
Sbjct: 223 EAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLN---QMVNSKILPDVVIFS 279

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  CK G+V+    ++  +++    PD V +T+L+ G C +S + EA  +F  +   
Sbjct: 280 TVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRK 339

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+VI+Y+TLING C+      A+ LFEEM            P+T TY T++ GLC  
Sbjct: 340 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKE------WIPDTKTYNTLMYGLCHV 393

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A  LF +M  +   PD+VTY+ L+   C      EA  LL  +    + PD+  +
Sbjct: 394 GRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVY 453

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+I+D +C+ G+++ A  L   +  +G++P+  T++ ++ G C  G +N A +LF+ M+ 
Sbjct: 454 NIIIDGMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDG 513

Query: 387 MGC 389
             C
Sbjct: 514 NDC 516



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/271 (32%), Positives = 139/271 (51%), Gaps = 9/271 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  I D M+     P  +T   L+ G CL      D  + +F  +   G  PD+ +Y  
Sbjct: 293 EAHEIVDMMIQRGVEPDVVTYTTLMDGHCL--QSEMDEAVKVFDMMVRKGFAPDVISYTT 350

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ ++     +   + R  + PD   + +L+ GLC   R+ +A ALF ++ A G
Sbjct: 351 LINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDAIALFHEMVARG 410

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++TYS L++ LC+  H   A+ L + +   N        P+   Y  IIDG+C+ G
Sbjct: 411 QMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASN------LNPDIQVYNIIIDGMCRAG 464

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A++LF  +  K ++P V TYN +IHG C     NEAN L +EM      PD  T+N
Sbjct: 465 ELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYN 524

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNT 358
            I     +N +   A +LLE M+ RG + ++
Sbjct: 525 TIARGFLQNNETLRAIQLLEEMLARGFSADS 555


>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 579

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/311 (45%), Positives = 190/311 (61%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T + A   F+ ML M+P PP    FN L   +AK KH+ T+LSL  +++S G+ P++YT 
Sbjct: 41  TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +ILIN FC + RV   F VL +IL+    PD   FT+LI+G+  E +I EA  LF K+  
Sbjct: 100 HILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMIG 159

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+TY TLINGLC+ G+T  A+ L   M   N      C+PN   Y TIID LCK
Sbjct: 160 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCK 213

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  K I+PD+ TYNSLIH  C   +W     LL EM+D  + PDVV+
Sbjct: 214 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 273

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++D LCK GK+ EA  +++ MI RGV PN  T++ LMDG CL   ++ A ++F +M 
Sbjct: 274 FNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMV 333

Query: 386 SMGCKHTVFSY 396
             GC   V SY
Sbjct: 334 CKGCMPNVISY 344



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 160/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +      +LF  + + G+ PD++TYN LI+  C +    H   +
Sbjct: 199 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 258

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S   PD V+F +++  LC E ++ EA  +  K+   G +PNV+TY+ L++G C 
Sbjct: 259 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCL 318

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M          C PN ++Y T+I+G CK   +DKA  LF +M  + +
Sbjct: 319 LSEMDEAVKVFDTMVCKG------CMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQEL 372

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY++LIHG C+     +A  L  EM+     P++VT+ +++D LCKN  + EA  
Sbjct: 373 IPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMA 432

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    ++P+    +  +DG C  G +  A++LF ++ S G +  V++Y
Sbjct: 433 LLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTY 484



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 157/301 (52%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F  M+    SP   T +N L   L     +  V +L   +  + + PD+ ++N +
Sbjct: 219 EAFNLFSEMVTKGISPDIFT-YNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVSFNTV 277

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G+V+    V+ ++++    P+ V +T+L+ G C  S + EA  +F  +   GC
Sbjct: 278 VDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGC 337

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNVI+Y+TLING C+      A+ LF EM            P+TVTY+T+I GLC    
Sbjct: 338 MPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQE------LIPDTVTYSTLIHGLCHVER 391

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M   +  P++VTY  L+   C      EA  LL  +    + PD+   N+
Sbjct: 392 LQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNI 451

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +D +C+ G+++ A  L   +  +G+ P+  T+S +++G C  G ++ A +LF  M+  G
Sbjct: 452 AIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENG 511

Query: 389 C 389
           C
Sbjct: 512 C 512



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 17/302 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKT 120
           D  S    +   CK   +G +T     EA  + D M+     P  +T   L+ G CL   
Sbjct: 270 DVVSFNTVVDALCK---EGKVT-----EAHDVVDKMIQRGVEPNVVTYTALMDGHCL--L 319

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
              D  + +F  +   G  P++ +YN LIN +CK+ R+     + G + R    PD V +
Sbjct: 320 SEMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTY 379

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           ++LI GLC   R+ +A ALF ++ A    PN++TY  L++ LC+  +   A+ L + +  
Sbjct: 380 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 439

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
            N        P+       IDG+C+ G ++ A++LF  +  K + PDV TY+ +I+G C 
Sbjct: 440 SN------LDPDIQVNNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCR 493

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
               +EA+ L  EM + G   +   +N I     +N +   A +LL+ M+ RG + + ST
Sbjct: 494 RGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGFSADAST 553

Query: 361 FS 362
            +
Sbjct: 554 MT 555


>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 917

 Score =  270 bits (690), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 128/301 (42%), Positives = 190/301 (63%), Gaps = 9/301 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI---------LINCFCKM 155
           P   +FN+L  CL   K  +  L+    +   G  PD+ TY+I         LI+  CK 
Sbjct: 8   PDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILCKE 67

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+V     +L  +++     D V +++LIKGLC E RI EA  LF  ++  GC+P+ ITY
Sbjct: 68  GKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITY 127

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
            TL+ GLC+TG+  +AL L +EM N  G++G+ CKP  ++Y+ IIDGLCK+   D+A+EL
Sbjct: 128 GTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEAREL 187

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +MK + + PDV++Y SLIHGFC++  W +A CL  EM+D G+QPDV T  V++D  CK
Sbjct: 188 FKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCK 247

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA+ LLE+M+ RG   +  T+STL+ G C+  R++ A +LF+SM+ +GC+    +
Sbjct: 248 EGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIA 307

Query: 396 Y 396
           Y
Sbjct: 308 Y 308



 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 197/310 (63%), Gaps = 3/310 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +F+ M      P  ++   L+ G CL+    ++    LF  +   G+ PD+ T +
Sbjct: 475 DEARELFEEMKAQGIMPDVISYTTLIHGFCLSG--KWEKAKCLFNEMLDVGIQPDVTTSS 532

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI+  CK G+V     +L  +++     D V  T+L+KGLC + RI +A  LF K++  
Sbjct: 533 VLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 592

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC PNV+T +TL+ GLC++G+  +AL L + M +    +G+ CKPN ++Y+ IIDGLCK 
Sbjct: 593 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 652

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G  D+A+ELF +MK   + PDV++Y SLIHGFC +  W +A  L  EM+D GVQPDV TF
Sbjct: 653 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 712

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +V++D LCK GK+ EA+ LLE+MI RG  PNT T++TL+ G C+  R++ A +LF+ M+ 
Sbjct: 713 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQK 772

Query: 387 MGCKHTVFSY 396
           +GC   V +Y
Sbjct: 773 LGCLPDVVTY 782



 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 130/315 (41%), Positives = 197/315 (62%), Gaps = 8/315 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF------P 140
           +EA  +F  M  +   P  +    L+ G L +T   +  L L +  LN T  +      P
Sbjct: 287 SEATQLFMSMKKLGCRPDAIAYGTLMKG-LCQTGKINIALHLHQEMLNDTSQYGIKCIRP 345

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+ T ++LI+  CK G+V     +L  +++     D V +++LIKGLC E RI EA  LF
Sbjct: 346 DVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLF 405

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             ++  GC+P+ ITY TL+ GLC+TG+  +AL L +EM N  G++G+ CKP  ++Y+ II
Sbjct: 406 MSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIII 465

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DGLCK+   D+A+ELF +MK + I PDV++Y +LIHGFC +  W +A CL  EM+D G+Q
Sbjct: 466 DGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKAKCLFNEMLDVGIQ 525

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PDV T +V++D LCK GK+ EA++LLE++I RG   +  T +TL+ G C+  R++ A +L
Sbjct: 526 PDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCILDVVTCTTLVKGLCMKHRISKATQL 585

Query: 381 FVSMESMGCKHTVFS 395
           F+ M+ +GC   V +
Sbjct: 586 FLKMQKLGCMPNVVT 600



 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 159/255 (62%), Gaps = 1/255 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M  +   P  ++  +L+ G   ++  +     LF  +   G+ PD+ T+++
Sbjct: 656 DEARELFKEMKALGVIPDVISYTSLIHG-FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 714

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G+V     +L  +++    P+ V +T+L+KGLC   RI EA  LF K++  G
Sbjct: 715 LIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG 774

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY TL+ GLC+TG+   AL L ++M +  G++G   KP+ ++Y+ IIDGLCK G
Sbjct: 775 CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHG 834

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A+ELF +MK   + P+V++Y SLIHGFC +    +A  L  EM+DQGVQ + VT++
Sbjct: 835 REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYS 894

Query: 328 VIMDELCKNGKMDEA 342
           V++   CK G++D+A
Sbjct: 895 VMIHGFCKEGQIDKA 909



 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/299 (35%), Positives = 165/299 (55%), Gaps = 7/299 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+  L      +  ++    LF  +   G+ PD+ T  +LI+ FCK G+V     +
Sbjct: 198 PDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVLIDMFCKEGKVIEANEL 257

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++      D V +++LIKGLC + RI EA  LF  +K  GC+P+ I Y TL+ GLC+
Sbjct: 258 LEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYGTLMKGLCQ 317

Query: 225 TGHTIVALNLFEEMANGNGKFGVVC-KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           TG   +AL+L +EM N   ++G+ C +P+  T + +ID LCKEG V +A EL   M  + 
Sbjct: 318 TGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDILCKEGKVIEANELLEVMIQRG 377

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              D+VTY++LI G C  +  +EA  L + M   G +PD +T+  +M  LC+ G ++ A 
Sbjct: 378 CILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIAL 437

Query: 344 RLLELMI----LRGV--NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L + M+      G+   P   ++S ++DG C   R + A+ELF  M++ G    V SY
Sbjct: 438 QLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFEEMKAQGIMPDVISY 496



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 156/297 (52%), Gaps = 17/297 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y +N +P+     S++++   L K    D    LFK + + G+ PD+ +Y  LI+ FC+ 
Sbjct: 631 YGINCKPNA---ISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRS 687

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+      +   ++     PD   F+ LI  LC E +++EA  L   +   GC PN +TY
Sbjct: 688 GKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTY 747

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           +TL+ GLC       A  LF +M     K G  C P+ VTY T++ GLC+ G +  A EL
Sbjct: 748 TTLVKGLCMNDRISEATQLFMKMQ----KLG--CLPDVVTYGTLMKGLCQTGNIKTALEL 801

Query: 276 FLQMKDK------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             +M         N  PDV++Y+ +I G C     +EA  L  EM   GV P+V+++  +
Sbjct: 802 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 861

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +   C++GK+++A  L   M+ +GV  N  T+S ++ GFC  G+++ A  LF  ME+
Sbjct: 862 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 916



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 146/263 (55%), Gaps = 12/263 (4%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+  +Y+I+I+  CK GR      +   +      PD +++TSLI G C   +  +A  L
Sbjct: 637 PNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYL 696

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++   G +P+V T+S LI+ LC+ G  I A  L E M          C PNTVTYTT+
Sbjct: 697 FNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG------CIPNTVTYTTL 750

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM-DQG 318
           + GLC    + +A +LF++M+     PDVVTY +L+ G C   +   A  L  +M+ D G
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTG 810

Query: 319 -----VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
                 +PDV+++++I+D LCK+G+ DEA  L + M   GV PN  ++++L+ GFC +G+
Sbjct: 811 QYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGK 870

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           +  AK LF  M   G +    +Y
Sbjct: 871 LEDAKHLFNEMVDQGVQLNAVTY 893



 Score = 97.8 bits (242), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/203 (31%), Positives = 101/203 (49%), Gaps = 9/203 (4%)

Query: 203 LKAFGCKPNVITYSTLINGLC---RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           ++  G  P+  T++ LIN LC   R    + A+                 +P+  T + +
Sbjct: 1   MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSML 60

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ID LCKEG V +A EL   M  +    D+VTY++LI G C  +  +EA  L + M   G 
Sbjct: 61  IDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGC 120

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMI----LRGV--NPNTSTFSTLMDGFCLTGR 373
           +PD +T+  +M  LC+ G ++ A +L + M+      G+   P   ++S ++DG C   R
Sbjct: 121 RPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRR 180

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + A+ELF  M++ G    V SY
Sbjct: 181 EDEARELFKEMKAQGMMPDVISY 203


>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
 gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  266 bits (681), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 131/308 (42%), Positives = 197/308 (63%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F++M++  P  P +  F+ L   L + KHY TVLSL KR+    +  D++ +NIL
Sbjct: 67  DALFSFNHMIHKHP-LPCIVEFDKLLSALVRIKHYGTVLSLSKRIELLRIERDVFHFNIL 125

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCF ++ RV   F VLG+I++  F PDAV F+SLI GLC E +   A   F ++ A G 
Sbjct: 126 INCFSRLQRVDFAFSVLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGY 185

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN+ TY+T+I G C+ G T VA+ L ++M    G+      P+ V Y TIIDGLCK+  
Sbjct: 186 QPNLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGR------PDIVIYNTIIDGLCKDRL 239

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A ++F ++K K + PDV TY+ L+HG C ++   EA+ L  EMM   + PDVVTFN+
Sbjct: 240 VSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNI 299

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D+LCK G + EA  ++++MI +GV PN +T+++LM+G+CL  +V  A+ +F +M + G
Sbjct: 300 LVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKG 359

Query: 389 CKHTVFSY 396
           C   V SY
Sbjct: 360 CMPNVVSY 367



 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 174/300 (58%), Gaps = 7/300 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   ++ +   P  +T  +L+ G   + K +   +  F  + ++G  P+L+TYN +I
Sbjct: 138 AFSVLGKIIKLGFEPDAVTFSSLINGLCFEDK-FARAMEFFDEMVASGYQPNLHTYNTII 196

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             FCK+G+ +    +L ++ ++   PD V + ++I GLC +  + EA  +F+++K  G +
Sbjct: 197 KGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVR 256

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V TYS L++GLC +     A  LF EM + N        P+ VT+  ++D LCKEG +
Sbjct: 257 PDVFTYSILMHGLCNSDQKEEASALFNEMMSLN------IMPDVVTFNILVDKLCKEGML 310

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A+ +   M +K + P+  TYNSL++G+C  N   EA  +   M+ +G  P+VV++N++
Sbjct: 311 SEAQGIIKIMIEKGVEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNIL 370

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++  CK  ++DEA  L + M  RG+ PNT  ++TL+ G C  GR   A+ELF  M++ GC
Sbjct: 371 INGYCKAQRIDEARELFDEMSFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGC 430



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 133/270 (49%), Gaps = 6/270 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K +     L +F  +   G+ PD++TY+IL++  C   +      +
Sbjct: 222 PDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASAL 281

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD V F  L+  LC E  + EA  +   +   G +PN  TY++L+NG C 
Sbjct: 282 FNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMIEKGVEPNYATYNSLMNGYCL 341

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +F+ M          C PN V+Y  +I+G CK   +D+A+ELF +M  + +
Sbjct: 342 QNKVFEARMVFDAMITKG------CMPNVVSYNILINGYCKAQRIDEARELFDEMSFRGL 395

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+   YN+LI G C A    EA  L  +M  QG  PD+VT  +++D LCK G +D A R
Sbjct: 396 IPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALR 455

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           L   M    + PN  T+  L+     +G++
Sbjct: 456 LFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M + R   P   ++N L   L +   +     LFK + + G  PDL T  I
Sbjct: 381 DEARELFDEM-SFRGLIPNTFNYNTLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTI 439

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
           L++  CK+G + +   +   +  SC  P+ V +  LI+ +    +I
Sbjct: 440 LLDSLCKLGYLDNALRLFRAMQDSCLKPNLVTYDILIRAMYKSGKI 485


>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
          Length = 586

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/311 (43%), Positives = 189/311 (60%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP +  F  L   + K KHY TVLSL  +++S G+ P++YT 
Sbjct: 48  TLDDALSSFNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 106

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+   F VL +IL+    P+   F +LI+GLC E +I E   LF K+  
Sbjct: 107 NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 166

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 167 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 220

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  + I+P + TYNSLIH  C   +W     LL EM++  + P+VV 
Sbjct: 221 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 280

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI RGV PN  T++ LMDG CL   ++ A ++F +M 
Sbjct: 281 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 340

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 341 CKGFAPDVVSY 351



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 163/295 (55%), Gaps = 12/295 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K +      +LF  +   G+ P ++TYN LI+  C +    H   +
Sbjct: 206 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 265

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S   P+ V F++++  LC E ++MEA  +   +   G +PNV+TY+ L++G C 
Sbjct: 266 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 325

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
                 A+ +F+ M         VCK   P+ V+Y+T+I+G CK   ++KA  LF +M  
Sbjct: 326 RSEMDEAVKVFDTM---------VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR 376

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K + P+ VTY++L+HG C+     +A  L  EM+ +G  PD V++ +++D LCKN ++DE
Sbjct: 377 KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDE 436

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  LL+ +    ++P+   ++ ++DG C  G +  A++LF ++ S G    V++Y
Sbjct: 437 AIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTY 491



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 156/300 (52%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  M++   SP   T +N L   L     +  V +L   + ++ + P++  ++ +
Sbjct: 226 QAFNLFSEMIHQGISPSIFT-YNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 284

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G+V     V+  +++    P+ V + +L+ G C  S + EA  +F  +   G 
Sbjct: 285 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 344

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V++YSTLING C+      A+ LFEEM            PNTVTY+T++ GLC  G 
Sbjct: 345 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE------LIPNTVTYSTLMHGLCHVGR 398

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M  +   PD V+Y  L+   C     +EA  LL  +    + PD+  + +
Sbjct: 399 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 458

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D +C+ G+++ A  L   +  +G++PN  T++ +++G C  G +  A +LF  M+  G
Sbjct: 459 VIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 518



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+  R   P + ++N L          D  + +F  +   G  PD+ +Y+ L
Sbjct: 296 EAHDVVDMMIK-RGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTL 354

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+ R+     +   + R    P+ V +++L+ GLC   R+ +A ALF ++   G 
Sbjct: 355 INGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQ 414

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ ++Y  L++ LC+      A+ L + +   N        P+   YT +IDG+C+ G 
Sbjct: 415 IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN------MDPDIQIYTIVIDGMCRAGE 468

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  K ++P+V TY  +I+G C      EA+ L  EM  +G  P+  T+N+
Sbjct: 469 LEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNL 528

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I     +N +     +LL+ M+ RG + + ST + L++     G     K++ 
Sbjct: 529 ITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQIL 581



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 10/266 (3%)

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           +D V  + KR    G+ P++ TYN L++  C    +     V   ++   F PD V++++
Sbjct: 298 HDVVDMMIKR----GVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYST 353

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI G C   RI +A  LF ++      PN +TYSTL++GLC  G    A+ LF EM    
Sbjct: 354 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVT-R 412

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G+      P+ V+Y  ++D LCK   +D+A  L   ++  N++PD+  Y  +I G C A 
Sbjct: 413 GQI-----PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 467

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +   A  L   +  +G+ P+V T+ ++++ LC+ G + EAS+L   M  +G +PN  T++
Sbjct: 468 ELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYN 527

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMG 388
            +  GF          +L   M + G
Sbjct: 528 LITRGFLRNNETLRGIQLLQEMLARG 553



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 7/259 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+  +   P + S++ L     K +  +  + LF+ +    L P+  TY+ 
Sbjct: 330 DEAVKVFDTMV-CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 388

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C +GR+     +   ++     PD V++  L+  LC   R+ EA AL   ++   
Sbjct: 389 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 448

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++  Y+ +I+G+CR G    A +LF  +++          PN  TYT +I+GLC++G
Sbjct: 449 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG------LHPNVWTYTIMINGLCQQG 502

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +LF +MK K  +P+  TYN +  GF   N+      LL EM+ +G   DV T  
Sbjct: 503 LLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTST 562

Query: 328 VIMDELCKNGKMDEASRLL 346
           V+++ L  +G      ++L
Sbjct: 563 VLVEMLSDDGLDQSVKQIL 581


>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 577

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 135/311 (43%), Positives = 189/311 (60%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP +  F  L   + K KHY TVLSL  +++S G+ P++YT 
Sbjct: 39  TLDDALSSFNRMLHMHP-PPSIADFTKLLISITKMKHYSTVLSLSHQMDSFGIPPNIYTL 97

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+   F VL +IL+    P+   F +LI+GLC E +I E   LF K+  
Sbjct: 98  NILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGEVLHLFDKMIG 157

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY TLINGLC+ G T  A+ L   M  GN      C+P+ V YT+IID LCK
Sbjct: 158 EGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGN------CQPDVVVYTSIIDSLCK 211

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  + I+P + TYNSLIH  C   +W     LL EM++  + P+VV 
Sbjct: 212 DRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVI 271

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK GK+ EA  ++++MI RGV PN  T++ LMDG CL   ++ A ++F +M 
Sbjct: 272 FSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMV 331

Query: 386 SMGCKHTVFSY 396
             G    V SY
Sbjct: 332 CKGFAPDVVSY 342



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 163/295 (55%), Gaps = 12/295 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K +      +LF  +   G+ P ++TYN LI+  C +    H   +
Sbjct: 197 PDVVVYTSIIDSLCKDRQVTQAFNLFSEMIHQGISPSIFTYNSLIHALCNLCEWKHVTAL 256

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S   P+ V F++++  LC E ++MEA  +   +   G +PNV+TY+ L++G C 
Sbjct: 257 LNEMVNSKIMPNVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCL 316

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
                 A+ +F+ M         VCK   P+ V+Y+T+I+G CK   ++KA  LF +M  
Sbjct: 317 RSEMDEAVKVFDTM---------VCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCR 367

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K + P+ VTY++L+HG C+     +A  L  EM+ +G  PD V++ +++D LCKN ++DE
Sbjct: 368 KELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDE 427

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  LL+ +    ++P+   ++ ++DG C  G +  A++LF ++ S G    V++Y
Sbjct: 428 AIALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKGLHPNVWTY 482



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 156/300 (52%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  M++   SP   T +N L   L     +  V +L   + ++ + P++  ++ +
Sbjct: 217 QAFNLFSEMIHQGISPSIFT-YNSLIHALCNLCEWKHVTALLNEMVNSKIMPNVVIFSTV 275

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G+V     V+  +++    P+ V + +L+ G C  S + EA  +F  +   G 
Sbjct: 276 VDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGF 335

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V++YSTLING C+      A+ LFEEM            PNTVTY+T++ GLC  G 
Sbjct: 336 APDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKE------LIPNTVTYSTLMHGLCHVGR 389

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M  +   PD V+Y  L+   C     +EA  LL  +    + PD+  + +
Sbjct: 390 LQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTI 449

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D +C+ G+++ A  L   +  +G++PN  T++ +++G C  G +  A +LF  M+  G
Sbjct: 450 VIDGMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 509



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 146/293 (49%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+  R   P + ++N L          D  + +F  +   G  PD+ +Y+ L
Sbjct: 287 EAHDVVDMMIK-RGVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTL 345

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+ R+     +   + R    P+ V +++L+ GLC   R+ +A ALF ++   G 
Sbjct: 346 INGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQ 405

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ ++Y  L++ LC+      A+ L + +   N        P+   YT +IDG+C+ G 
Sbjct: 406 IPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN------MDPDIQIYTIVIDGMCRAGE 459

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  K ++P+V TY  +I+G C      EA+ L  EM  +G  P+  T+N+
Sbjct: 460 LEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNL 519

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I     +N +     +LL+ M+ RG + + ST + L++     G     K++ 
Sbjct: 520 ITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDGLDQSVKQIL 572



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 10/266 (3%)

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           +D V  + KR    G+ P++ TYN L++  C    +     V   ++   F PD V++++
Sbjct: 289 HDVVDMMIKR----GVEPNVVTYNALMDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYST 344

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI G C   RI +A  LF ++      PN +TYSTL++GLC  G    A+ LF EM    
Sbjct: 345 LINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVT-R 403

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G+      P+ V+Y  ++D LCK   +D+A  L   ++  N++PD+  Y  +I G C A 
Sbjct: 404 GQI-----PDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVIDGMCRAG 458

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +   A  L   +  +G+ P+V T+ ++++ LC+ G + EAS+L   M  +G +PN  T++
Sbjct: 459 ELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYN 518

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMG 388
            +  GF          +L   M + G
Sbjct: 519 LITRGFLRNNETLRGIQLLQEMLARG 544



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/259 (28%), Positives = 132/259 (50%), Gaps = 7/259 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+  +   P + S++ L     K +  +  + LF+ +    L P+  TY+ 
Sbjct: 321 DEAVKVFDTMV-CKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYST 379

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C +GR+     +   ++     PD V++  L+  LC   R+ EA AL   ++   
Sbjct: 380 LMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSN 439

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++  Y+ +I+G+CR G    A +LF  +++          PN  TYT +I+GLC++G
Sbjct: 440 MDPDIQIYTIVIDGMCRAGELEAARDLFSNLSSKG------LHPNVWTYTIMINGLCQQG 493

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +LF +MK K  +P+  TYN +  GF   N+      LL EM+ +G   DV T  
Sbjct: 494 LLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTST 553

Query: 328 VIMDELCKNGKMDEASRLL 346
           V+++ L  +G      ++L
Sbjct: 554 VLVEMLSDDGLDQSVKQIL 572


>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 761

 Score =  265 bits (678), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 132/310 (42%), Positives = 197/310 (63%), Gaps = 3/310 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +F  M      P  ++   L+ G CL+    ++    LF  +   G+ PD+ T +
Sbjct: 319 DEARELFKEMKAQGIMPDVISYTTLIHGFCLSG--KWEKAKCLFNEMLDVGIQPDVTTSS 376

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI+  CK G+V     +L  +++    PD V  T+L+KGLC + RI +A  LF K++  
Sbjct: 377 VLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQKL 436

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC PNV+T +TL+ GLC++G+  +AL L + M +    +G+ CKPN ++Y+ IIDGLCK 
Sbjct: 437 GCMPNVVTCATLMKGLCQSGNIKIALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKC 496

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G  D+A+ELF +MK   + PDV++Y SLIHGFC +  W +A  L  EM+D GVQPDV TF
Sbjct: 497 GREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTF 556

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +V++D LCK GK+ EA+ LLE+MI RG  PNT T++TL+ G C+  R++ A +LF+ M+ 
Sbjct: 557 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQK 616

Query: 387 MGCKHTVFSY 396
           +GC   V +Y
Sbjct: 617 LGCLPDVVTY 626



 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 126/327 (38%), Positives = 190/327 (58%), Gaps = 37/327 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++++   L K +  D    LFK + + G+ PD+ +Y  LI+ FC+ G+      +
Sbjct: 119 PTLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCL 178

Query: 165 LGRIL------------------------------------RSCFTPDAVAFTSLIKGLC 188
              +L                                    R C   D V +++LIKGLC
Sbjct: 179 FNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCIL-DIVTYSTLIKGLC 237

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            + RI EA  LF  ++  GC+P+ I Y TL+ GLC+TG+   AL L +EM N  G++G+ 
Sbjct: 238 MKHRISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIK 297

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           CKP  ++Y+ IIDGLCK+   D+A+ELF +MK + I PDV++Y +LIHGFC +  W +A 
Sbjct: 298 CKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISYTTLIHGFCLSGKWEKAK 357

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           CL  EM+D G+QPDV T +V++D LCK GK+ EA++LLE++I RG  P+  T +TL+ G 
Sbjct: 358 CLFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQRGCIPDVVTCTTLVKGL 417

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFS 395
           C+  R++ A +LF+ M+ +GC   V +
Sbjct: 418 CMKHRISKATQLFLKMQKLGCMPNVVT 444



 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 117/261 (44%), Positives = 174/261 (66%)

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            G+ PD+ T  +LI+ FCK G+V     +L  +++     D V +++LIKGLC + RI E
Sbjct: 4   VGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISE 63

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  LF  +K  GC+P+ I Y TL+ GLC+TG   +AL+L +EM N   ++G+ CKP  V+
Sbjct: 64  ATQLFMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVS 123

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+ IIDGLCK+   D+A+ELF +MK + + PDV++Y SLIHGFC +  W +A CL  EM+
Sbjct: 124 YSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKAKCLFNEML 183

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           D G++ DV T ++++D LCK GK+ EA+ LLE+MI RG   +  T+STL+ G C+  R++
Sbjct: 184 DVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHRIS 243

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF+SM+ +GC+    +Y
Sbjct: 244 EATRLFMSMQKLGCRPDAIAY 264



 Score =  201 bits (511), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 99/255 (38%), Positives = 159/255 (62%), Gaps = 1/255 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M  +   P  ++  +L+ G   ++  +     LF  +   G+ PD+ T+++
Sbjct: 500 DEARELFKEMKALGVIPDVISYTSLIHG-FCRSGKWKDAKYLFNEMVDIGVQPDVTTFSV 558

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G+V     +L  +++    P+ V +T+L+KGLC   RI EA  LF K++  G
Sbjct: 559 LIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLG 618

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY TL+ GLC+TG+   AL L ++M +  G++G   KP+ ++Y+ IIDGLCK G
Sbjct: 619 CLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHG 678

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A+ELF +MK   + P+V++Y SLIHGFC +    +A  L  EM+DQGVQ + VT++
Sbjct: 679 REDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYS 738

Query: 328 VIMDELCKNGKMDEA 342
           V++   CK G++D+A
Sbjct: 739 VMIHGFCKEGQIDKA 753



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/297 (32%), Positives = 156/297 (52%), Gaps = 17/297 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y +N +P+     S++++   L K    D    LFK + + G+ PD+ +Y  LI+ FC+ 
Sbjct: 475 YGINCKPNA---ISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRS 531

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+      +   ++     PD   F+ LI  LC E +++EA  L   +   GC PN +TY
Sbjct: 532 GKWKDAKYLFNEMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTY 591

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           +TL+ GLC       A  LF +M     K G  C P+ VTY T++ GLC+ G +  A EL
Sbjct: 592 TTLVKGLCMNDRISEATQLFMKMQ----KLG--CLPDVVTYGTLMKGLCQTGNIKTALEL 645

Query: 276 FLQMKDK------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             +M         N  PDV++Y+ +I G C     +EA  L  EM   GV P+V+++  +
Sbjct: 646 HKKMLSDTGQYGTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSL 705

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +   C++GK+++A  L   M+ +GV  N  T+S ++ GFC  G+++ A  LF  ME+
Sbjct: 706 IHGFCRSGKLEDAKHLFNEMVDQGVQLNAVTYSVMIHGFCKEGQIDKA--LFQKMEA 760



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 170/321 (52%), Gaps = 19/321 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLF-----PD 141
           ++A  +F  M  +   P  +T   L+ G L ++ +    L L K  L+ T  +     P+
Sbjct: 424 SKATQLFLKMQKLGCMPNVVTCATLMKG-LCQSGNIKIALELHKNMLSDTSPYGINCKPN 482

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
             +Y+I+I+  CK GR      +   +      PD +++TSLI G C   +  +A  LF 
Sbjct: 483 AISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFN 542

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G +P+V T+S LI+ LC+ G  I A  L E M          C PNTVTYTT++ 
Sbjct: 543 EMVDIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRG------CIPNTVTYTTLVK 596

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM-DQG-- 318
           GLC    + +A +LF++M+     PDVVTY +L+ G C   +   A  L  +M+ D G  
Sbjct: 597 GLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTGQY 656

Query: 319 ---VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
               +PDV+++++I+D LCK+G+ DEA  L + M   GV PN  ++++L+ GFC +G++ 
Sbjct: 657 GTNFKPDVISYSIIIDGLCKHGREDEARELFKEMKALGVIPNVISYTSLIHGFCRSGKLE 716

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            AK LF  M   G +    +Y
Sbjct: 717 DAKHLFNEMVDQGVQLNAVTY 737



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 149/304 (49%), Gaps = 18/304 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T+  +L     K         L + +   G   D+ TY+ LI   C   R+S    +
Sbjct: 8   PDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHRISEATQL 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL----KAFG--CKPNVITYSTL 218
              + +    PDA+A+ +L+KGLC   +I  A  L  ++      +G  CKP +++YS +
Sbjct: 68  FMSMKKLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSII 127

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+GLC+      A  LF+EM    G       P+ ++YT++I G C+ G  +KAK LF +
Sbjct: 128 IDGLCKDRREDEARELFKEM-KAQGMM-----PDVISYTSLIHGFCRSGKWEKAKCLFNE 181

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M D  I  DV T + LI   C      EAN LL  M+ +G   D+VT++ ++  LC   +
Sbjct: 182 MLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMKHR 241

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM------ESMGCKHT 392
           + EA+RL   M   G  P+   + TLM G C TG +N A +L   M        + CK T
Sbjct: 242 ISEATRLFMSMQKLGCRPDAIAYGTLMKGLCQTGNINTALQLHQEMLNDTGRYGIKCKPT 301

Query: 393 VFSY 396
           + SY
Sbjct: 302 LISY 305



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 56/83 (67%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+  G+QPDV T  V++D  CK GK+ EA+ LLE+M+ RG   +  T+STL+ G C+  R
Sbjct: 1   MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           ++ A +LF+SM+ +GC+    +Y
Sbjct: 61  ISEATQLFMSMKKLGCRPDAIAY 83


>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
          Length = 530

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 135/311 (43%), Positives = 189/311 (60%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP    F  L   +AK KHY TVLSL  +++S G+ PD+YT 
Sbjct: 92  TLDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 150

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+ + F VL ++L+    PD   F +LI+GLC E +I EA  LF K   
Sbjct: 151 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 210

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+TY TL+NGLC+ G+T  A+ L   M   N      C+PN + Y TIID LCK
Sbjct: 211 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN------CRPNVIAYNTIIDSLCK 264

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  K I+PD+ TYNSLIH  C   +W     LL EM++  + P+VV 
Sbjct: 265 DRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 324

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK G +  A  ++++MI RGV P+  T++ LMDG CL   ++ A ++F +M 
Sbjct: 325 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMV 384

Query: 386 SMGCKHTVFSY 396
             GC   V SY
Sbjct: 385 HKGCVPNVRSY 395



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 148/284 (52%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +      +LF  + + G+ PD++TYN LI+  C +    H   +
Sbjct: 250 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 309

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S   P+ V F++++  LC E  I  A  +   +   G +P+V+TY+ L++G C 
Sbjct: 310 LNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 369

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M +        C PN  +Y  +I+G C+   +DKA  L  QM  + +
Sbjct: 370 RSEMDEAVKVFDTMVHKG------CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 423

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D VTYN+LIHG C+      A  L  EM+  G  PD+VT+ +++D LCKN  + EA  
Sbjct: 424 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMV 483

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL+ +    ++ +   ++  +DG C  G +  A++LF ++   G
Sbjct: 484 LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSCQG 527



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 7/184 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + D M+     P  +T   L+ G   +++  D  + +F  +   G  P++ +YNILIN +
Sbjct: 344 VVDMMIKRGVEPDVVTYTALMDGHCLRSE-MDEAVKVFDTMVHKGCVPNVRSYNILINGY 402

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C++ R+     +L ++       D V + +LI GLC   R+  A ALF ++ A G  P++
Sbjct: 403 CQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDL 462

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY  L++ LC+  H   A+ L + +   N         + + Y   IDG+C+ G ++ A
Sbjct: 463 VTYRILLDYLCKNHHLAEAMVLLKAIEGSN------LDADILVYNIAIDGMCRAGELEAA 516

Query: 273 KELF 276
           ++LF
Sbjct: 517 RDLF 520


>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
 gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
          Length = 597

 Score =  265 bits (676), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 131/309 (42%), Positives = 191/309 (61%), Gaps = 6/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++ML+ +P P  +    LL   +   ++YD V+SL K++   GL P++YT +I
Sbjct: 74  DDALASFNHMLHRKPLPCIIQFAKLLSAIVKMGQYYDVVISLSKQMELVGLSPNIYTLSI 133

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +NCFC++ RV  GF VL ++++    P  V FT+LI GLC      +A  LF  + A G
Sbjct: 134 FMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAVELFDDMVAKG 193

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+V TY+T+INGLC+ G T  A  L ++M          C+PN VTY+T+ID LC++ 
Sbjct: 194 CQPDVYTYNTIINGLCKIGETAAAAGLLKKMEEAG------CQPNMVTYSTLIDSLCRDR 247

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ++F  MK K I+PD+ TY SLI G C  + W EA+ LL EM    + PD+VTFN
Sbjct: 248 LVNEALDIFSYMKAKGISPDIFTYTSLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFN 307

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D  CK GK+ EA  +L+ M   GV PN  T+S+LM G+ L   V  A++LF  M + 
Sbjct: 308 VLVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITK 367

Query: 388 GCKHTVFSY 396
           GCK  +FSY
Sbjct: 368 GCKPNIFSY 376



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 164/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM     SP   T  +L+ G L K   +    +L   + S  + PD+ T+N+
Sbjct: 250 NEALDIFSYMKAKGISPDIFTYTSLIQG-LCKFSRWKEASALLNEMTSLNIMPDIVTFNV 308

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G+VS    VL  +      P+ V ++SL+ G    + ++EA  LF  +   G
Sbjct: 309 LVDTFCKEGKVSEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEARKLFHVMITKG 368

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKPN+ +Y+ LING C+      A+ LF EM +          PN V+Y T+I G C+ G
Sbjct: 369 CKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQG------LTPNNVSYNTLIHGFCQLG 422

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A++LF  M      PD+ TY+ L+ GFC      +A  L   M    ++P++V + 
Sbjct: 423 KLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYT 482

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  +CK+G   +A +L   + ++G+ P+   ++T+++G C  G ++ A E F +ME+ 
Sbjct: 483 ILVHAMCKSGNHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEAD 542

Query: 388 GCKHTVFSY 396
           GC     SY
Sbjct: 543 GCPPDEISY 551



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 131/251 (52%), Gaps = 10/251 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+  +   P + S+N+L     K K  D  + LF  +   GL P+  +YN L
Sbjct: 356 EARKLFHVMIT-KGCKPNIFSYNILINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTL 414

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC++G++     +   +  +   PD   ++ L+ G C +  + +A  LF  +++   
Sbjct: 415 IHGFCQLGKLREAQDLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYL 474

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPN++ Y+ L++ +C++G+   A  LF E+      F    +P+   YTTII+GLCKEG 
Sbjct: 475 KPNLVMYTILVHAMCKSGNHKDARKLFSEL------FVQGLQPHVQLYTTIINGLCKEGL 528

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A E F  M+     PD ++YN +I G     D + A  L+ EM D+G   DV     
Sbjct: 529 LDEALEAFRNMEADGCPPDEISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADV---RP 585

Query: 329 IMDELCKNGKM 339
            + E+C+  K+
Sbjct: 586 CLSEVCQGKKV 596



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 131/266 (49%), Gaps = 7/266 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M  M   P  +T  +L++G    T   +    LF  + + G  P++++YNI
Sbjct: 320 SEALGVLKTMTEMGVEPNVVTYSSLMYGYSLWTDVVEA-RKLFHVMITKGCKPNIFSYNI 378

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  R+     +   ++    TP+ V++ +LI G C   ++ EA  LF  +   G
Sbjct: 379 LINGYCKAKRIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREAQDLFRNMCTNG 438

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TYS L++G C+ G+   A  LF  M +         KPN V YT ++  +CK G
Sbjct: 439 NLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQS------TYLKPNLVMYTILVHAMCKSG 492

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A++LF ++  + + P V  Y ++I+G C     +EA      M   G  PD +++N
Sbjct: 493 NHKDARKLFSELFVQGLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPDEISYN 552

Query: 328 VIMDELCKNGKMDEASRLLELMILRG 353
           VI+  L ++     A  L+  M  RG
Sbjct: 553 VIIRGLLQHKDESRALLLVGEMRDRG 578


>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Vitis vinifera]
          Length = 686

 Score =  264 bits (675), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 135/311 (43%), Positives = 189/311 (60%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP    F  L   +AK KHY TVLSL  +++S G+ PD+YT 
Sbjct: 130 TLDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 188

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+ + F VL ++L+    PD   F +LI+GLC E +I EA  LF K   
Sbjct: 189 NILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFDKTIG 248

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+TY TL+NGLC+ G+T  A+ L   M   N      C+PN + Y TIID LCK
Sbjct: 249 EGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKN------CRPNVIAYNTIIDSLCK 302

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  K I+PD+ TYNSLIH  C   +W     LL EM++  + P+VV 
Sbjct: 303 DRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVV 362

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D LCK G +  A  ++++MI RGV P+  T++ LMDG CL   ++ A ++F +M 
Sbjct: 363 FSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMV 422

Query: 386 SMGCKHTVFSY 396
             GC   V SY
Sbjct: 423 HKGCVPNVRSY 433



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +      +LF  + + G+ PD++TYN LI+  C +    H   +
Sbjct: 288 PNVIAYNTIIDSLCKDRQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTL 347

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S   P+ V F++++  LC E  I  A  +   +   G +P+V+TY+ L++G C 
Sbjct: 348 LNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCL 407

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M +        C PN  +Y  +I+G C+   +DKA  L  QM  + +
Sbjct: 408 RSEMDEAVKVFDTMVHKG------CVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGL 461

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D VTYN+LIHG C+      A  L  EM+  G  PD+VT+ +++D LCKN  + EA  
Sbjct: 462 IADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMV 521

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    ++ +   ++  +DG C  G +  A++LF ++ S G +  V +Y
Sbjct: 522 LLKAIEGSNLDADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTY 573



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 156/301 (51%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F  M+    SP   T +N L   L     +  V +L   + ++ + P++  ++ +
Sbjct: 308 EAFNLFSEMITKGISPDIFT-YNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTV 366

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G ++    V+  +++    PD V +T+L+ G C  S + EA  +F  +   GC
Sbjct: 367 VDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGC 426

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV +Y+ LING C+      A+ L E+M+      G++   +TVTY T+I GLC  G 
Sbjct: 427 VPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ----GLIA--DTVTYNTLIHGLCHVGR 480

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M      PD+VTY  L+   C  +   EA  LL  +    +  D++ +N+
Sbjct: 481 LQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNI 540

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +D +C+ G+++ A  L   +  +G+ P+  T++ ++ G C  G ++ A +LF  M+  G
Sbjct: 541 AIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENG 600

Query: 389 C 389
           C
Sbjct: 601 C 601



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 140/267 (52%), Gaps = 11/267 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M++ +   P + S+N+L     + +  D  + L ++++  GL  D  TYN 
Sbjct: 412 DEAVKVFDTMVH-KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNT 470

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C +GR+ H   +   ++ S   PD V +  L+  LC    + EA  L   ++   
Sbjct: 471 LIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN 530

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +++ Y+  I+G+CR G    A +LF  +++         +P+  TY  +I GLCK G
Sbjct: 531 LDADILVYNIAIDGMCRAGELEAARDLFSNLSSKG------LQPDVRTYNIMIHGLCKRG 584

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +LF +M +   + D   YN++I GF  +N+   A  LL EM+ +G   DV T  
Sbjct: 585 LLDEANKLFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTT 644

Query: 328 VIMDELCKNGKMDEASRLLELMILRGV 354
           +I++ L  +G +D++    E + LRGV
Sbjct: 645 LIVEMLSDDG-LDQS---FERLRLRGV 667



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M+     P  +T   L+ G   +++  D  + +F  +   G  P++ +YNILI
Sbjct: 379 AHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE-MDEAVKVFDTMVHKGCVPNVRSYNILI 437

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +C++ R+     +L ++       D V + +LI GLC   R+  A ALF ++ A G  
Sbjct: 438 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 497

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TY  L++ LC+  H   A+ L + +   N         + + Y   IDG+C+ G +
Sbjct: 498 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN------LDADILVYNIAIDGMCRAGEL 551

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A++LF  +  K + PDV TYN +IHG C     +EAN L  +M + G   D   +N I
Sbjct: 552 EAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENGCSRDGCIYNTI 611

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +    ++ +   A++LL+ M+  G + + ST + +++
Sbjct: 612 IRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVE 648


>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 592

 Score =  264 bits (674), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 133/311 (42%), Positives = 191/311 (61%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T +EA   F+ ML+M+P PP +  F  +   +A  KHY TVLSL K+++S G+  D+YT 
Sbjct: 54  TIDEALSSFNRMLHMQP-PPSVVDFAKILTSIANMKHYSTVLSLSKQMDSLGIPSDVYTL 112

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN FC + RV  GF VL +I +    PD   FT+LI+GLC E +I EA  LF K+  
Sbjct: 113 AIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLFDKMVG 172

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PN +TY TLI+GLC+ G++  A+ L   M   N      C+PN +TY TIID L K
Sbjct: 173 EGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKN------CEPNVITYNTIIDCLFK 226

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V++A  +F +M  K I+P+V TYNS+IHG C  ++W     L+ EM+D  + P+VV 
Sbjct: 227 DRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVI 286

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F  ++D LCK G +  A  ++++MI RGV P+  T++ LMDG CL   ++ A ++F +M 
Sbjct: 287 FTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMV 346

Query: 386 SMGCKHTVFSY 396
             GC   V SY
Sbjct: 347 RKGCAPNVISY 357



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 161/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +  CL K +  +  L++F  + + G+ P++ TYN +I+  CK     H   +
Sbjct: 212 PNVITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATL 271

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ S   P+ V FT+L+  LC E  +  A  +   +   G +P+V+TY+ L++G C 
Sbjct: 272 MNEMVDSKIMPNVVIFTTLVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCL 331

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +F+ M          C PN ++Y+T+I+G CK   +DKA  LF +M  + +
Sbjct: 332 RSEMDEADKVFDTMVRKG------CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQREL 385

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++VTYN+LIHG C+     +A  L  EM+  G  PD+VT+ +++D LCK   +D+A  
Sbjct: 386 VPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMA 445

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+ +    + P+  +++ ++DG C  G +  A +LF S+ S G    V++Y
Sbjct: 446 MLKAIEGSNLAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTY 497



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 160/302 (52%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF  M+  +   P ++++N +   L K   +  V +L   +  + + P++  +  
Sbjct: 231 NEALNIFSEMI-AKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVIFTT 289

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G V+    V+  +++    PD V +T+L+ G C  S + EA  +F  +   G
Sbjct: 290 LVDALCKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDGHCLRSEMDEADKVFDTMVRKG 349

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNVI+YSTLING C+      A+ LFEEM            PN VTY T+I GLC  G
Sbjct: 350 CAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRE------LVPNIVTYNTLIHGLCHVG 403

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A  LF +M      PD+VTY  L+   C     ++A  +L  +    + PD+ ++N
Sbjct: 404 RLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYN 463

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D +C+ G+++ A  L   +  +G++P+  T++ +++G CL G +  A +LF  M + 
Sbjct: 464 IVIDGMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTD 523

Query: 388 GC 389
           GC
Sbjct: 524 GC 525



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M+     P  +T   L+ G   +++  D    +F  +   G  P++ +Y+ LI
Sbjct: 303 AHDVVDVMIQRGVEPDVVTYTALMDGHCLRSE-MDEADKVFDTMVRKGCAPNVISYSTLI 361

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +CK+ R+     +   + +    P+ V + +LI GLC   R+ +A ALF ++ A G  
Sbjct: 362 NGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQI 421

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TY  L++ LC+T H   A+ + + +   N        P+  +Y  +IDG+C+ G +
Sbjct: 422 PDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN------LAPDIQSYNIVIDGMCRVGEL 475

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A +LF  +  K ++PDV TY  +I+G C      EA  L  EM   G  PD  T+N+I
Sbjct: 476 EAAGDLFSSLSSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLI 535

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
                +N +   A +LL+ M+ RG + + ST + +++     G     K++ 
Sbjct: 536 TRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDGLDQSVKQIL 587



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 130/260 (50%), Gaps = 7/260 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+  +   P + S++ L     K +  D  + LF+ +    L P++ TYN 
Sbjct: 336 DEADKVFDTMVR-KGCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNT 394

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C +GR+     +   ++ S   PD V +  L+  LC    + +A A+   ++   
Sbjct: 395 LIHGLCHVGRLRDAIALFHEMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSN 454

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ +Y+ +I+G+CR G    A +LF  +++          P+  TYT +I+GLC +G
Sbjct: 455 LAPDIQSYNIVIDGMCRVGELEAAGDLFSSLSSKG------LHPDVWTYTIMINGLCLQG 508

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +LF +M     +PD  TYN +  GF   N+   A  LL EM+ +G   D  T  
Sbjct: 509 LLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNETLSAIQLLQEMLGRGFSADASTIT 568

Query: 328 VIMDELCKNGKMDEASRLLE 347
           +I++ L  +G      ++L 
Sbjct: 569 LIVEMLSDDGLDQSVKQILH 588


>gi|449444228|ref|XP_004139877.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492643|ref|XP_004159059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 585

 Score =  264 bits (674), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 147/366 (40%), Positives = 205/366 (56%), Gaps = 18/366 (4%)

Query: 24  FSSSFPHTRK-PKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDI 82
           FSS F H+   P S+   +  + P +   L E        R SL+  L     +  +G+I
Sbjct: 24  FSSLFTHSPTIPSSNPQISSANHPKSLHALSE--------RISLQHGLPMFIHNCKKGNI 75

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           T+    +A   FD M+        + SFNLL G LAK KHY  V SL+K+++  GL P+ 
Sbjct: 76  TS---TQALQFFDLMMR------SIISFNLLLGALAKIKHYSQVFSLYKKMHLAGLSPNF 126

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           +T NILINC C + RV  G   +  I+R  + PD V +TSLIKGLC E RI EA  LF +
Sbjct: 127 FTLNILINCLCNVNRVREGLSAMAGIMRRGYIPDVVTYTSLIKGLCMEHRISEATRLFIR 186

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           ++  GC PNV+TY TLI GLCRTG+  +AL L +EM NG   + + CKPN  +Y  IID 
Sbjct: 187 MQKLGCWPNVVTYGTLIKGLCRTGNINLALKLHQEMLNGTSPYAINCKPNIFSYNIIIDE 246

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G   +AK LF +M D+ + PDVVT+++LI   C      EA   L  MM +G+ PD
Sbjct: 247 LCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKEGMVIEAKKFLETMMLRGIVPD 306

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           + TF  +++  C  G +D A  L   M  +G  P+  +++ L+ G+C T  V  A +L+ 
Sbjct: 307 LFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVEEAMKLYN 366

Query: 383 SMESMG 388
            M  +G
Sbjct: 367 EMLRVG 372



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 160/319 (50%), Gaps = 34/319 (10%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y +N +P+   + S+N++   L K   +     LF  +   G+ PD+ T++ LI+  CK 
Sbjct: 229 YAINCKPN---IFSYNIIIDELCKIGKWKEAKRLFNEMVDQGVRPDVVTFSALIDTLCKE 285

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G V      L  ++     PD   FTSLI+G C    +  A  LF  + + G +P+VI+Y
Sbjct: 286 GMVIEAKKFLETMMLRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISY 345

Query: 216 STLINGLCRTGHTIVALNLFEEMAN-----------------------GNGK--FGVVCK 250
           + LI G C+T +   A+ L+ EM                         G+ K  FGVV K
Sbjct: 346 TVLIYGYCKTFNVEEAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVV-K 404

Query: 251 PNTVTY-----TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           P+ V       +  +DGLCK G + +A ELF ++K  N+  D+ ++N LI G C A    
Sbjct: 405 PHAVPKNLYICSVFLDGLCKNGCLFEAMELFNELKSYNMKLDIESFNCLIDGLCKARKLE 464

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            A  L  ++  +G+QPDVVT+ ++++  CKNG++D A+ L ++M   G  PN  T+S L+
Sbjct: 465 TAWELFEKLSQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALL 524

Query: 366 DGFCLTGRVNHAKELFVSM 384
            GF    ++    +L   M
Sbjct: 525 HGFYKNNKLEEVVKLLHKM 543



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/267 (30%), Positives = 132/267 (49%), Gaps = 6/267 (2%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           +R   P L +F  L          D+   LF  + S G  PD+ +Y +LI  +CK   V 
Sbjct: 300 LRGIVPDLFTFTSLIEGFCLVGDLDSAKELFLSMPSKGYEPDVISYTVLIYGYCKTFNVE 359

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +   +LR    PD   F  L+KGL    ++ +A  LF  +K      N+   S  +
Sbjct: 360 EAMKLYNEMLRVGKWPDMKTFCVLLKGLFLAGKVGDAKKLFGVVKPHAVPKNLYICSVFL 419

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +GLC+ G    A+ LF E+ + N K  +       ++  +IDGLCK   ++ A ELF ++
Sbjct: 420 DGLCKNGCLFEAMELFNELKSYNMKLDIE------SFNCLIDGLCKARKLETAWELFEKL 473

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             + + PDVVTY  +I+GFC     + AN L   M + G  P+++T++ ++    KN K+
Sbjct: 474 SQEGLQPDVVTYCIMINGFCKNGQVDNANILFQMMEENGCTPNLLTYSALLHGFYKNNKL 533

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMD 366
           +E  +LL  MI + V+   S ++ + D
Sbjct: 534 EEVVKLLHKMIQKDVSLAASIYTIVED 560


>gi|356532716|ref|XP_003534917.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 527

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 128/300 (42%), Positives = 194/300 (64%), Gaps = 7/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ML +R +PP +  FN + G L K KHY T +SLFK++   G+ PDL+T NILINCFC +G
Sbjct: 1   MLLVRDTPP-IMEFNKIVGSLVKMKHYPTAISLFKQMQVKGIEPDLFTLNILINCFCHLG 59

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +++  F VLG+IL+  + P+ +   +L+KGLC +  + ++     K+ A G + + ++Y+
Sbjct: 60  QMTFSFTVLGKILKLGYQPNTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYA 119

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TL+NGLC+ G T  AL L   + + +       +PN V Y TIIDGLCK+  V++A +L+
Sbjct: 120 TLLNGLCKIGETRSALKLLRMIEDRS------TRPNVVMYNTIIDGLCKDKLVNEAYDLY 173

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  + I P+V+TY++LI+GFC A    EA  LL EM+ + + P+V T+ ++MD LCK 
Sbjct: 174 SEMDARGIFPNVITYSTLIYGFCLAGQLMEAFGLLNEMILKNINPNVYTYTILMDALCKE 233

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK+ EA  LL +M   GV PN  +++TLMDG+CL G V +AK++F +M   G    V+SY
Sbjct: 234 GKVKEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSY 293



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 163/300 (54%), Gaps = 6/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R + P +  +N +   L K K  +    L+  +++ G+FP++ TY+ LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPNVITYSTLIYGFCLAG 199

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  ++     P+   +T L+  LC E ++ EA  L   +   G KPNV++Y+
Sbjct: 200 QLMEAFGLLNEMILKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYN 259

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TL++G C  G    A  +F  M       GV   PN  +Y  +ID LCK   VD+A  L 
Sbjct: 260 TLMDGYCLIGEVQNAKQMFHTMVQK----GV--NPNVYSYNIMIDRLCKSKRVDEAMNLL 313

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            ++  KN+ P+ VTY+SLI GFC       A  LL EM  +G   DVVT+  ++D LCKN
Sbjct: 314 REVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCKN 373

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +D+A+ L   M  RG+ PN  T++ L+DG C  GR  +A++LF  +   GC+  V++Y
Sbjct: 374 QNLDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTY 433



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/307 (34%), Positives = 161/307 (52%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  +T  N L   L         L    ++ + G   D  +Y  L+
Sbjct: 64  SFTVLGKILKLGYQPNTIT-LNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYATLL 122

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G       +L  I      P+ V + ++I GLC +  + EA  L++++ A G  
Sbjct: 123 NGLCKIGETRSALKLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIF 182

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNVITYSTLI G C  G  + A  L  EM   N        PN  TYT ++D LCKEG V
Sbjct: 183 PNVITYSTLIYGFCLAGQLMEAFGLLNEMILKN------INPNVYTYTILMDALCKEGKV 236

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +AK L   M  + + P+VV+YN+L+ G+C   +   A  +   M+ +GV P+V ++N++
Sbjct: 237 KEAKNLLAVMTKEGVKPNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIM 296

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK+ ++DEA  LL  ++ + + PNT T+S+L+DGFC  GR+  A +L   M   G 
Sbjct: 297 IDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQ 356

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 357 PADVVTY 363



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+ ++   P + ++ +L   L K        +L   +   G+ P++ +YN L
Sbjct: 203 EAFGLLNEMI-LKNINPNVYTYTILMDALCKEGKVKEAKNLLAVMTKEGVKPNVVSYNTL 261

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C +G V +   +   +++    P+  ++  +I  LC   R+ EA  L  ++     
Sbjct: 262 MDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNM 321

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +TYS+LI+G C+ G    AL+L +EM +  G+       + VTYT+++D LCK   
Sbjct: 322 VPNTVTYSSLIDGFCKLGRITSALDLLKEMYH-RGQ-----PADVVTYTSLLDALCKNQN 375

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +DKA  LF++MK++ I P+  TY +LI G C       A  L   ++ +G + +V T+NV
Sbjct: 376 LDKATALFMKMKERGIQPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGCRINVWTYNV 435

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++  LCK G +DEA  +   M   G  P+  TF  ++       + + A++L   M
Sbjct: 436 MISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEKLLHEM 491



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 81/248 (32%), Positives = 127/248 (51%), Gaps = 6/248 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L               +F  +   G+ P++Y+YNI+I+  CK  RV     +
Sbjct: 253 PNVVSYNTLMDGYCLIGEVQNAKQMFHTMVQKGVNPNVYSYNIMIDRLCKSKRVDEAMNL 312

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+ V ++SLI G C   RI  A  L  ++   G   +V+TY++L++ LC+
Sbjct: 313 LREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDLLKEMYHRGQPADVVTYTSLLDALCK 372

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  LF +M     + G+  +PN  TYT +IDGLCK G    A++LF  +  K  
Sbjct: 373 NQNLDKATALFMKMK----ERGI--QPNKYTYTALIDGLCKGGRHKNAQKLFQHLLVKGC 426

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +V TYN +I G C     +EA  +  +M + G  PD VTF +I+  L +  + D+A +
Sbjct: 427 RINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVTFEIIIRSLFEKDQNDKAEK 486

Query: 345 LLELMILR 352
           LL  MI +
Sbjct: 487 LLHEMIAK 494



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/244 (29%), Positives = 120/244 (49%), Gaps = 34/244 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N++   L K+K  D  ++L + +    + P+  TY+ LI+ FCK+GR++    +
Sbjct: 288 PNVYSYNIMIDRLCKSKRVDEAMNLLREVLHKNMVPNTVTYSSLIDGFCKLGRITSALDL 347

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       D V +TSL+  LC    + +A ALF K+K  G +PN  TY+ LI+GLC+
Sbjct: 348 LKEMYHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPNKYTYTALIDGLCK 407

Query: 225 TGHTIVALNLFEE---------------MANGNGKFGVV--------------CKPNTVT 255
            G    A  LF+                M +G  K G++              C P+ VT
Sbjct: 408 GGRHKNAQKLFQHLLVKGCRINVWTYNVMISGLCKEGMLDEALAMKSKMEENGCIPDAVT 467

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           +  II  L ++   DKA++L  +M    I  D++ +    HG    N+ ++A  LL EM+
Sbjct: 468 FEIIIRSLFEKDQNDKAEKLLHEM----IAKDLLRFRDF-HGERSPNENDKAEKLLHEMI 522

Query: 316 DQGV 319
            +G+
Sbjct: 523 AKGL 526


>gi|449462479|ref|XP_004148968.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 580

 Score =  262 bits (670), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/373 (38%), Positives = 202/373 (54%), Gaps = 52/373 (13%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
           F    CK+   G++TA     A   F  M+   P+P  L+SFN L   LAK KHY  V S
Sbjct: 38  FFLRHCKT---GNVTA---THALHFFHLMMRSTPTPS-LSSFNHLLSGLAKIKHYSQVFS 90

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L+ ++  +GL  D  T NIL+NC C + R+  GF     ILR  ++P+ V + +LIKGLC
Sbjct: 91  LYNQMRLSGLSSDRCTLNILLNCLCNVNRLREGFAAFAGILRRGYSPNIVTYNTLIKGLC 150

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E RI EA  LF +++  GC P+V+TY TLI GLC TG+  +AL L +EM N   ++ + 
Sbjct: 151 MEHRISEATRLFLRMQKLGCTPDVVTYGTLIKGLCGTGNINIALKLHQEMLNDISRYEIN 210

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK---------------------------- 280
           CKPN +TY  I+DGLCK G  D+AK+LF +MK                            
Sbjct: 211 CKPNVITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDMVTFNVLIDTL 270

Query: 281 -----------------DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
                            +  I PD+VTYNSLI GFC   D N A  L + M  +G +PDV
Sbjct: 271 CKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDV 330

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           +++NV+++   K  K++EA +L   M+L G  PN  T+ +L+ G  L G+V+ AK+LF  
Sbjct: 331 ISYNVLINGYSKTLKVEEAMKLYNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSV 390

Query: 384 MESMGCKHTVFSY 396
           M++ G     ++Y
Sbjct: 391 MKAHGIAENSYTY 403



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 100/314 (31%), Positives = 160/314 (50%), Gaps = 19/314 (6%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP----------DL 142
           I  Y +N +P+   + ++N++   L K    D    LF+ + + G+ P          D+
Sbjct: 204 ISRYEINCKPN---VITYNIIVDGLCKVGREDEAKQLFEEMKTQGMIPNEMLDQGLQPDM 260

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T+N+LI+  CK G+V     +LG ++ S   PD V + SLI+G C    +  A  LF  
Sbjct: 261 VTFNVLIDTLCKEGKVIEAKKLLGVMIESGIVPDLVTYNSLIEGFCMVGDLNSARELFVS 320

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           + + GC+P+VI+Y+ LING  +T     A+ L+ EM        V  +PN +TY +++ G
Sbjct: 321 MPSKGCEPDVISYNVLINGYSKTLKVEEAMKLYNEM------LLVGKRPNVITYDSLLKG 374

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           +   G VD AK+LF  MK   I  +  TY   + G C  +   EA  L  E+     + +
Sbjct: 375 IFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCKNDCLFEAMKLFTELKSSNFKLE 434

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           +   N ++D LCK GK++ A  L E +   G  PN  T++ ++ GFC  G+V+ A  L  
Sbjct: 435 IENLNCLIDGLCKAGKLETAWELFEKLSNEGHEPNVVTYTIMIHGFCREGQVDKANVLIQ 494

Query: 383 SMESMGCKHTVFSY 396
            ME+ GC   + +Y
Sbjct: 495 KMEANGCTPDIITY 508



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L          ++   LF  + S G  PD+ +YN+LIN + K  +V     +
Sbjct: 293 PDLVTYNSLIEGFCMVGDLNSARELFVSMPSKGCEPDVISYNVLINGYSKTLKVEEAMKL 352

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ + + SL+KG+    ++ +A  LF+ +KA G   N  TY   ++GLC+
Sbjct: 353 YNEMLLVGKRPNVITYDSLLKGIFLAGKVDDAKKLFSVMKAHGIAENSYTYGIFLDGLCK 412

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ LF E+ + N K  +           +IDGLCK G ++ A ELF ++ ++  
Sbjct: 413 NDCLFEAMKLFTELKSSNFKLEIE------NLNCLIDGLCKAGKLETAWELFEKLSNEGH 466

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTY  +IHGFC     ++AN L+ +M   G  PD++T+N +M    ++ K++E  +
Sbjct: 467 EPNVVTYTIMIHGFCREGQVDKANVLIQKMEANGCTPDIITYNTLMRGFYESNKLEEVVQ 526

Query: 345 LLELMILRGVNPNTSTFSTLMD 366
           LL  M  + V+P+  T S ++D
Sbjct: 527 LLHRMAQKDVSPDAITCSIVVD 548


>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
 gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  260 bits (665), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 191/309 (61%), Gaps = 6/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++ML+ +P P  +    LL   +   ++YDTV+SL K++   GL P++YT +I
Sbjct: 79  DDALASFNHMLHRKPLPCIIQFTKLLSAIVKMGQYYDTVISLTKQMELAGLSPNIYTLSI 138

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCF  + RV   F VL +I++    P  V FT+LI  LC   +  +A  LF  + A G
Sbjct: 139 LINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARG 198

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+V TY+T+INGLC+ G T  A  L ++M          C+PN VTY+TIID   K+ 
Sbjct: 199 CRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAG------CQPNVVTYSTIIDSHRKDR 252

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ++F  MK K I+PD+ TYNSLI G C  + W EA+ LL EM    + PD+VTFN
Sbjct: 253 RVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFN 312

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D +CK GK+ EA  +L+ M   GV P+  T+S+LM G+ L   V  A++LF +M + 
Sbjct: 313 VLVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITK 372

Query: 388 GCKHTVFSY 396
           GCK  VFSY
Sbjct: 373 GCKPDVFSY 381



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 164/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM  ++   P + ++N L   L     +    +L   + S  + PD+ T+N+
Sbjct: 255 NEALDIFSYM-KVKGISPDIFTYNSLIQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNV 313

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G+VS    VL  +      PD V ++SL+ G    S ++EA  LF  +   G
Sbjct: 314 LVDTICKEGKVSEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKG 373

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+V +Y+ LING C+      A  LF EM +          PN V+Y T+I GLC+ G
Sbjct: 374 CKPDVFSYNILINGYCKVKRIDEAKQLFNEMIHQG------LTPNNVSYNTLIHGLCQLG 427

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+ LF  M      P++ TY+ L+ GFC    + +A  L   M     +P++V +N
Sbjct: 428 SLREARNLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYN 487

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D +CK+G + +A +L   + ++G+ PN   ++T+++G C  G ++ A E F +ME  
Sbjct: 488 ILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEED 547

Query: 388 GCKHTVFSY 396
           GC     SY
Sbjct: 548 GCPPDEISY 556



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 133/267 (49%), Gaps = 30/267 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M  M   P  +T  +L++G   +++  +    LF  + + G  PD+++YNI
Sbjct: 325 SEAQGVLKTMTEMGVEPDVVTYSSLMYGYSLRSEVVEA-RKLFDAMITKGCKPDVFSYNI 383

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+     +   ++    TP+ V++ +LI GLC    + EA  LF  +   G
Sbjct: 384 LINGYCKVKRIDEAKQLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREARNLFKNMHTNG 443

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK-------- 250
             PN+ TYS L++G C+ G+   A  LF  M +   K  +V         CK        
Sbjct: 444 NLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAMCKSGNLRDAR 503

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN   YTTII+GLCKEG +D+A E F  M++    PD ++YN +I GF
Sbjct: 504 KLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPDEISYNVIIRGF 563

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVT 325
            +  D + A  L+ EM D+G   DV T
Sbjct: 564 LHHKDESRAVQLIGEMRDKGFIADVGT 590


>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
 gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
          Length = 608

 Score =  259 bits (663), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 133/314 (42%), Positives = 191/314 (60%), Gaps = 7/314 (2%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           T I+ ++A   F  M+ M P P  +  F    G  AK K Y TV+SL  +++  G+  ++
Sbjct: 65  TNISIDDALASFYRMVRMNPRPS-VAEFGKFLGSFAKKKQYSTVVSLCNQMDLFGVTHNV 123

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           Y+ N+LINC C++  V     +LG++ +    P A  F +LI GLC E +I EA  LF +
Sbjct: 124 YSLNVLINCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNE 183

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           +   G +PNVI+Y+T+INGLC+TG+T +A+++F++M   NG     CKP+ VTY TIID 
Sbjct: 184 MVRRGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPDVVTYNTIIDS 237

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK+  V+ A E   +M D+ I P+V TYN ++HGFC     NEA  L  EM+ + V PD
Sbjct: 238 LCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPD 297

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
            VT  +++D LCK G + EA  + E M  +GV PN ST++ LMDG+CL   +N AK++F 
Sbjct: 298 TVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFE 357

Query: 383 SMESMGCKHTVFSY 396
            M   GC   V SY
Sbjct: 358 IMIRQGCAPGVHSY 371



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 170/343 (49%), Gaps = 42/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ M+  R   P + S+N +   L KT +    + +FK++   G  PD+ TYN +
Sbjct: 176 EAVELFNEMVR-RGHEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTI 234

Query: 149 INCFCKMGRVS-------------------------HGFVVLGRILRSC----------F 173
           I+  CK   V+                         HGF +LG++  +            
Sbjct: 235 IDSLCKDRLVNDAMEFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDV 294

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD V  T L+ GLC E  + EA  +F  +   G +PN+ TY+ L++G C       A  
Sbjct: 295 MPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKK 354

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +FE M          C P   +Y  +I+G CK   +D+AK L  +M  K +NPD VTY++
Sbjct: 355 VFEIMIRQG------CAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYST 408

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+ G C      EA  +  EM   G+ P++VT+++++D  CK+G +DEA +LL+ M  + 
Sbjct: 409 LMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK 468

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + PN    + L++G  + G++  AKELF  + + G + T+ +Y
Sbjct: 469 LEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTY 511



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 145/279 (51%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M   +   P ++++N L       +  +    +F+ +   G  P +++YNI
Sbjct: 315 SEARLVFETMTE-KGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNI 373

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FCK  R+     +L  +      PD V +++L++GLC   R  EA  +F ++ ++G
Sbjct: 374 LINGFCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYG 433

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++TYS L++G C+ GH   AL L + M           +PN V +T +I+G+   G
Sbjct: 434 LLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKK------LEPNIVHHTILIEGMFIAG 487

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF ++    I P + TY  +I G       +EA  L  +M D G  P+  ++N
Sbjct: 488 KLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYN 547

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           V++    +N     A RL++ M+ +  + N STF  L+D
Sbjct: 548 VMIQGFLQNQDSSTAIRLIDEMVGKRFSANLSTFQMLLD 586



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 145/281 (51%), Gaps = 7/281 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M+  R   P   +  +L   L K         +F+ +   G+ P++ TYN 
Sbjct: 280 NEATRLFKEMVG-RDVMPDTVTLTILVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNA 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C    ++    V   ++R    P   ++  LI G C   R+ EA +L  ++    
Sbjct: 339 LMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRRMDEAKSLLAEMYHKA 398

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYSTL+ GLC+ G    ALN+F+EM +    +G++  PN VTY+ ++DG CK G
Sbjct: 399 LNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCS----YGLL--PNLVTYSILLDGFCKHG 452

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +L   M++K + P++V +  LI G   A     A  L  ++   G++P + T+ 
Sbjct: 453 HLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYT 512

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           V++  L K G  DEA  L   M   G  PN+ +++ ++ GF
Sbjct: 513 VMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGF 553



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 148/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A      ML+ R  PP + ++N +          +    LFK +    + PD  T  I
Sbjct: 245 NDAMEFLSEMLD-RGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVTLTI 303

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G VS   +V   +      P+   + +L+ G C +  + EA  +F  +   G
Sbjct: 304 LVDGLCKEGMVSEARLVFETMTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQG 363

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P V +Y+ LING C++     A +L  EM      +     P+TVTY+T++ GLC+ G
Sbjct: 364 CAPGVHSYNILINGFCKSRRMDEAKSLLAEM------YHKALNPDTVTYSTLMQGLCQFG 417

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A  +F +M    + P++VTY+ L+ GFC     +EA  LL  M ++ ++P++V   
Sbjct: 418 RPKEALNIFKEMCSYGLLPNLVTYSILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHT 477

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +   GK++ A  L   +   G+ P   T++ ++ G    G  + A +LF  ME  
Sbjct: 478 ILIEGMFIAGKLEVAKELFSKLFADGIRPTIRTYTVMIKGLLKEGLSDEAYDLFRKMEDD 537

Query: 388 G 388
           G
Sbjct: 538 G 538


>gi|9502386|gb|AAF88093.1|AC025417_21 T12C24.22 [Arabidopsis thaliana]
          Length = 1245

 Score =  259 bits (662), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/326 (38%), Positives = 198/326 (60%), Gaps = 11/326 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     I  I  ++A  +F  M+  RP  P L  F+  F  +A+TK ++ VL   
Sbjct: 47  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 101

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K+L   G+  ++YT NI+INCFC+  +    + VLG++++  + PD   F +LIKGL  E
Sbjct: 102 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 161

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            ++ EA  L  ++   GC+P+V+TY++++NG+CR+G T +AL+L  +M   N       K
Sbjct: 162 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 215

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            +  TY+TIID LC++G +D A  LF +M+ K I   VVTYNSL+ G C A  WN+   L
Sbjct: 216 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 275

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M+ + + P+V+TFNV++D   K GK+ EA+ L + MI RG++PN  T++TLMDG+C+
Sbjct: 276 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 335

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             R++ A  +   M    C   + ++
Sbjct: 336 QNRLSEANNMLDLMVRNKCSPDIVTF 361



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S 
Sbjct: 282 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 341

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++R+  +PD V FTSLIKG C   R+ +   +F  +   G   N +TYS L+ 
Sbjct: 342 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 401

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++G   +A  LF+EM +     GV+  P+ +TY  ++DGLC  G ++KA E+F  ++
Sbjct: 402 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQ 455

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              ++  +V Y ++I G C      +A  L   +  +GV+P+V+T+ V++  LCK G + 
Sbjct: 456 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 515

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA+ LL  M   G  PN  T++TL+      G +  + +L   M+S G
Sbjct: 516 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 563



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 150/288 (52%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ +   L +    D  +SLFK + + G+   + TYN L+   CK G+ + G ++L  +
Sbjct: 220 TYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDM 279

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P+ + F  L+     E ++ EA  L+ ++   G  PN+ITY+TL++G C     
Sbjct: 280 VSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRL 339

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A N+ + M          C P+ VT+T++I G C    VD   ++F  +  + +  + 
Sbjct: 340 SEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 393

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY+ L+ GFC +     A  L  EM+  GV PDV+T+ +++D LC NGK+++A  + E 
Sbjct: 394 VTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLEKALEIFED 453

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +    ++     ++T+++G C  G+V  A  LF S+   G K  V +Y
Sbjct: 454 LQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 501



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L K   ++    L K + S  + P++ T+N+L++ F K G++     +  
Sbjct: 253 VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 312

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++    +P+ + + +L+ G C ++R+ EA  +   +    C P+++T+++LI G C   
Sbjct: 313 EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK 372

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                + +F  ++    K G+V   N VTY+ ++ G C+ G +  A+ELF +M    + P
Sbjct: 373 RVDDGMKVFRNIS----KRGLV--ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLP 426

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV+TY  L+ G C      +A  +  ++    +   +V +  I++ +CK GK+++A  L 
Sbjct: 427 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF 486

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +  +GV PN  T++ ++ G C  G ++ A  L   ME  G
Sbjct: 487 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 528



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 66/301 (21%), Positives = 132/301 (43%), Gaps = 38/301 (12%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           + K    +   +LF  L   G+ P++ TY ++I+  CK G +S   ++L ++      P+
Sbjct: 473 MCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDGNAPN 532

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL-------------- 222
              + +LI+    +  +  +A L  ++K+ G   +  +   +I+ L              
Sbjct: 533 DCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIKMVIDMLLSAMKRLTLRYCLS 592

Query: 223 --CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF--------VDKA 272
              ++   ++ L+  E++   +  F  +   NT+T +  ++ +   G         + K 
Sbjct: 593 KGSKSRQDLLELSGSEKIRLSSLTFVKMFPCNTITTSLNVNTIEARGMNSAELNRDLRKL 652

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDW--NEANCLLIEMMDQGVQPDVVTFNVIM 330
           +   +  K KN +  V+  N L+        W   +A C L  M+D  +  D V +    
Sbjct: 653 RRSSVLKKFKNRDVRVLVTNELLT-------WGLEDAECDL--MVDLELPTDAVHYAHRA 703

Query: 331 DELCKNGK---MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             + + G+   +  A  L + MI RG+ PNT T+S+L+DGFC   R++ A ++   M + 
Sbjct: 704 GRMRRPGRKMTVVTAEELHKEMIQRGIAPNTITYSSLIDGFCKENRLDEANQMLDLMVTK 763

Query: 388 G 388
           G
Sbjct: 764 G 764


>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
 gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 130/313 (41%), Positives = 189/313 (60%), Gaps = 7/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           +I+ ++A   F  ML M P P  +  F    G +AK K Y TV+SL  +++  G+  ++Y
Sbjct: 70  SISIDDALASFYRMLRMNPRPS-VVEFGRFLGSIAKKKQYSTVVSLCNQMDLFGVTHNVY 128

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           + NILINC C++  V     VLG++ +    PDA+ F +LI G C E  I EA  LF ++
Sbjct: 129 SLNILINCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEM 188

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G +P+VI+YST+INGLC++G+T +AL L  +M          CKPN V YTTIID L
Sbjct: 189 VRRGHQPDVISYSTVINGLCKSGNTSMALQLLRKMEEKG------CKPNLVAYTTIIDSL 242

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK+  V+ A +L  +M D+ I PDVVTY++++HGFC     NEA  L  EM+ + V P+ 
Sbjct: 243 CKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNT 302

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF +++D LCK G + EA  + E M  +G  PN  T++ LMDG+CL  +++ A+++   
Sbjct: 303 VTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDI 362

Query: 384 MESMGCKHTVFSY 396
           M   GC   V SY
Sbjct: 363 MVDKGCAPVVHSY 375



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++  +   L K    +  + L   +   G+ PD+ TY+ +++ FC +G ++   ++
Sbjct: 230 PNLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATIL 289

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P+ V FT L+ GLC E  + EA  +F  +   G +PN  TY+ L++G C 
Sbjct: 290 FNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCL 349

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + + M +        C P   +Y  +I+G CK   +D+AK L ++M +K +
Sbjct: 350 NNQMDEAQKVLDIMVDKG------CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKEL 403

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY++L+ G C      EA  L  EM   G+ PD++T++ ++D LCK+G +DEA +
Sbjct: 404 TPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALK 463

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M    + P+   ++ L++G  + G++  AKELF  + + G + T+ +Y
Sbjct: 464 LLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTY 515



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 147/281 (52%), Gaps = 7/281 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F+ M+  R   P   +F +L   L K         +F+ +   G  P+ YTYN 
Sbjct: 284 NEATILFNEMVG-RNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNA 342

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C   ++     VL  ++     P   ++  LI G C   R+ EA +L  ++    
Sbjct: 343 LMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE 402

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYSTL+ GLC+ G    ALNLF+EM +     G++  P+ +TY+T++DGLCK G
Sbjct: 403 LTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSS----GLL--PDLMTYSTLLDGLCKHG 456

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +L   M++  I PD+V YN LI G   A     A  L  ++   G+QP + T+ 
Sbjct: 457 HLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYT 516

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +++  L K G  DEA  L   M   G  PN+ +++ ++ GF
Sbjct: 517 IMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGF 557



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 151/301 (50%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +   M++ R  PP + +++ +        H +    LF  +    + P+  T+ I
Sbjct: 249 NDAMDLLSEMVD-RGIPPDVVTYSTILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTI 307

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G VS    V   + +    P+A  + +L+ G C  +++ EA  +   +   G
Sbjct: 308 LVDGLCKEGMVSEARCVFEAMTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKG 367

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P V +Y+ LING C+      A +L  EM+           P+TVTY+T++ GLC+ G
Sbjct: 368 CAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKE------LTPDTVTYSTLMQGLCQVG 421

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A  LF +M    + PD++TY++L+ G C     +EA  LL  M +  ++PD+V +N
Sbjct: 422 RPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYN 481

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +   GK++ A  L   +   G+ P   T++ ++ G    G  + A ELF  ME  
Sbjct: 482 ILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDD 541

Query: 388 G 388
           G
Sbjct: 542 G 542



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 144/279 (51%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA C+F+ M   + + P   ++N L          D    +   +   G  P +++YNI
Sbjct: 319 SEARCVFEAMTK-KGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNI 377

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  R+     +L  +     TPD V +++L++GLC   R  EA  LF ++ + G
Sbjct: 378 LINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSG 437

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++TYSTL++GLC+ GH   AL L + M           +P+ V Y  +I+G+   G
Sbjct: 438 LLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESK------IEPDIVLYNILIEGMFIAG 491

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF ++    I P + TY  +I G       +EA  L  +M D G  P+  ++N
Sbjct: 492 KLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYELFRKMEDDGFLPNSCSYN 551

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           VI+    +N     A RL++ M+ +  + ++STF  L+D
Sbjct: 552 VIIQGFLQNQDSSTAIRLIDEMVGKRFSADSSTFQMLLD 590



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 1/161 (0%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG      P EA  +F  M +    P  +T   LL G L K  H D  L L K +  + +
Sbjct: 415 QGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDG-LCKHGHLDEALKLLKSMQESKI 473

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+  YNILI      G++     +  ++      P    +T +IKGL  E    EA  
Sbjct: 474 EPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEGLSDEAYE 533

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           LF K++  G  PN  +Y+ +I G  +   +  A+ L +EM 
Sbjct: 534 LFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMV 574


>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
 gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
           [Arabidopsis thaliana]
          Length = 735

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/326 (38%), Positives = 198/326 (60%), Gaps = 11/326 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     I  I  ++A  +F  M+  RP  P L  F+  F  +A+TK ++ VL   
Sbjct: 57  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K+L   G+  ++YT NI+INCFC+  +    + VLG++++  + PD   F +LIKGL  E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            ++ EA  L  ++   GC+P+V+TY++++NG+CR+G T +AL+L  +M   N       K
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 225

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            +  TY+TIID LC++G +D A  LF +M+ K I   VVTYNSL+ G C A  WN+   L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M+ + + P+V+TFNV++D   K GK+ EA+ L + MI RG++PN  T++TLMDG+C+
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 345

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             R++ A  +   M    C   + ++
Sbjct: 346 QNRLSEANNMLDLMVRNKCSPDIVTF 371



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S 
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++R+  +PD V FTSLIKG C   R+ +   +F  +   G   N +TYS L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++G   +A  LF+EM +     GV+  P+ +TY  ++DGLC  G ++KA E+F  ++
Sbjct: 412 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              ++  +V Y ++I G C      +A  L   +  +GV+P+V+T+ V++  LCK G + 
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 525

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA+ LL  M   G  PN  T++TL+      G +  + +L   M+S G
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 152/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R     + +++ +   L +    D  +SLFK + + G+   + TYN L+   CK G+ + 
Sbjct: 222 RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWND 281

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G ++L  ++     P+ + F  L+     E ++ EA  L+ ++   G  PN+ITY+TL++
Sbjct: 282 GALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C       A N+ + M          C P+ VT+T++I G C    VD   ++F  + 
Sbjct: 342 GYCMQNRLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS 395

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + +  + VTY+ L+ GFC +     A  L  EM+  GV PDV+T+ +++D LC NGK++
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLE 455

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  + E +    ++     ++T+++G C  G+V  A  LF S+   G K  V +Y
Sbjct: 456 KALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L K   ++    L K + S  + P++ T+N+L++ F K G++     +  
Sbjct: 263 VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++    +P+ + + +L+ G C ++R+ EA  +   +    C P+++T+++LI G C   
Sbjct: 323 EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK 382

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                + +F  ++    K G+V   N VTY+ ++ G C+ G +  A+ELF +M    + P
Sbjct: 383 RVDDGMKVFRNIS----KRGLV--ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLP 436

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV+TY  L+ G C      +A  +  ++    +   +V +  I++ +CK GK+++A  L 
Sbjct: 437 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF 496

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +  +GV PN  T++ ++ G C  G ++ A  L   ME  G
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538


>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
 gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 128/312 (41%), Positives = 190/312 (60%), Gaps = 7/312 (2%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           I+ ++A   F  M+ M P P  +  F    G +AK K Y + +SL  +++  G+  ++Y+
Sbjct: 75  ISIDDALTSFYRMVRMNPRPS-VVEFGKFLGSIAKKKQYSSAVSLCNQMDLFGVTHNVYS 133

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            N+LINC C++  V     V+G++ +    PDA+ F +LI GLC E +I EA  LF ++ 
Sbjct: 134 LNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMV 193

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +PNVI+Y+T+INGLC+ G+TI+A+ +F +M    GK      PN VTY TIID LC
Sbjct: 194 WSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGK------PNVVTYNTIIDSLC 247

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  V++A E   +M D+ I PDVVTYN+++HGFC     NEA  L  EM+ + V PD V
Sbjct: 248 KDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTV 307

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TFN+++D LCK G + EA  + E M  +G  PN  T++ LMDG+CL  +++ A ++   M
Sbjct: 308 TFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIM 367

Query: 385 ESMGCKHTVFSY 396
              GC   + SY
Sbjct: 368 IGKGCAPNLSSY 379



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 103/323 (31%), Positives = 167/323 (51%), Gaps = 41/323 (12%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S N+L  CL +  H D  +S+  ++   G+ PD  T+N LIN  C  G++     +   +
Sbjct: 133 SLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEM 192

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR---- 224
           + S   P+ +++ ++I GLC     + A  +F K++    KPNV+TY+T+I+ LC+    
Sbjct: 193 VWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDRLV 252

Query: 225 --------------------TGHTIV-----------ALNLFEEMANGNGKFGVVCKPNT 253
                               T +TI+           A  LF+EM   N        P+T
Sbjct: 253 NEAVEFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRN------VMPDT 306

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VT+  ++DGLCKEG V +A+ +   M +K   P+  TYN+L+ G+C  N  +EA  +L  
Sbjct: 307 VTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGI 366

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+ +G  P++ ++N++++  CK+ +M+EA RLL  M  + + P+T T+STLM G C  GR
Sbjct: 367 MIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGR 426

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A  LF  M S G    + +Y
Sbjct: 427 PREALNLFKEMCSSGLLPDLMAY 449



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 160/307 (52%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F  M   R  P  +T +N +   L K +  +  +     +   G+ PD+ TYN ++
Sbjct: 220 AVRVFRKMEQNRGKPNVVT-YNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTIL 278

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FC +G+++    +   ++     PD V F  L+ GLC E  + EA  +   +   G +
Sbjct: 279 HGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAE 338

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN  TY+ L++G C       A+ +   M       G  C PN  +Y  +I+G CK   +
Sbjct: 339 PNAYTYNALMDGYCLHNQMDEAIKVLGIM------IGKGCAPNLSSYNILINGYCKSKRM 392

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++AK L  +M +KN+ PD VTY++L+ G C      EA  L  EM   G+ PD++ ++++
Sbjct: 393 NEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSGLLPDLMAYSIL 452

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D  CK+G +DEA +LL+ M  R + PN   ++ L+ G  + G++  AKELF  + + G 
Sbjct: 453 LDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGI 512

Query: 390 KHTVFSY 396
           +  +++Y
Sbjct: 513 RPDIWTY 519



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 151/301 (50%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA      M++ R  PP + ++N +          +    LFK +    + PD  T+NI
Sbjct: 253 NEAVEFLSEMVD-RGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNI 311

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G VS    V   +      P+A  + +L+ G C  +++ EA  +   +   G
Sbjct: 312 LVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKG 371

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ +Y+ LING C++     A  L  EM+  N        P+TVTY+T++ GLC+ G
Sbjct: 372 CAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKN------LTPDTVTYSTLMQGLCQVG 425

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A  LF +M    + PD++ Y+ L+ GFC     +EA  LL EM ++ ++P+++ + 
Sbjct: 426 RPREALNLFKEMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYT 485

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  +   GK++ A  L   +   G+ P+  T++ ++ G    G  + A E F  ME  
Sbjct: 486 ILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDD 545

Query: 388 G 388
           G
Sbjct: 546 G 546



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M+  R   P   +FN+L   L K         + + +   G  P+ YTYN 
Sbjct: 288 NEATRLFKEMVG-RNVMPDTVTFNILVDGLCKEGMVSEARCVSETMTEKGAEPNAYTYNA 346

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C   ++     VLG ++     P+  ++  LI G C   R+ EA  L +++    
Sbjct: 347 LMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNILINGYCKSKRMNEAKRLLSEMSEKN 406

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYSTL+ GLC+ G    ALNLF+EM +     G++  P+ + Y+ ++DG CK G
Sbjct: 407 LTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSS----GLL--PDLMAYSILLDGFCKHG 460

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +L  +M ++ I P+++ Y  LI G   A     A  L  ++   G++PD+ T+N
Sbjct: 461 HLDEALKLLKEMHERRIKPNIILYTILIRGMFIAGKLEVAKELFSKLSADGIRPDIWTYN 520

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           V++  L K G  DEA      M   G  P++ +++ ++ GF      + A +L   M
Sbjct: 521 VMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYNVIIQGFLQNQDSSTAIQLIDEM 577



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA C+ + M   + + P   ++N L          D  + +   +   G  P+L +YNI
Sbjct: 323 SEARCVSETMTE-KGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNLSSYNI 381

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  R++    +L  +     TPD V +++L++GLC   R  EA  LF ++ + G
Sbjct: 382 LINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVGRPREALNLFKEMCSSG 441

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++ YS L++G C+ GH   AL L +EM           KPN + YT +I G+   G
Sbjct: 442 LLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERR------IKPNIILYTILIRGMFIAG 495

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF ++    I PD+ TYN +I G       +EA     +M D G  PD  ++N
Sbjct: 496 KLEVAKELFSKLSADGIRPDIWTYNVMIKGLLKEGLSDEAYEFFRKMEDDGFLPDSCSYN 555

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           VI+    +N     A +L++ M+ +  + ++STF  L+D
Sbjct: 556 VIIQGFLQNQDSSTAIQLIDEMVGKRFSADSSTFQMLLD 594


>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial; Flags: Precursor
          Length = 602

 Score =  258 bits (659), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 125/326 (38%), Positives = 198/326 (60%), Gaps = 11/326 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     I  I  ++A  +F  M+  RP  P L  F+  F  +A+TK ++ VL   
Sbjct: 57  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K+L   G+  ++YT NI+INCFC+  +    + VLG++++  + PD   F +LIKGL  E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLE 171

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            ++ EA  L  ++   GC+P+V+TY++++NG+CR+G T +AL+L  +M   N       K
Sbjct: 172 GKVSEAVVLVDRMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VK 225

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            +  TY+TIID LC++G +D A  LF +M+ K I   VVTYNSL+ G C A  WN+   L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M+ + + P+V+TFNV++D   K GK+ EA+ L + MI RG++PN  T++TLMDG+C+
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 345

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             R++ A  +   M    C   + ++
Sbjct: 346 QNRLSEANNMLDLMVRNKCSPDIVTF 371



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S 
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++R+  +PD V FTSLIKG C   R+ +   +F  +   G   N +TYS L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++G   +A  LF+EM +     GV+  P+ +TY  ++DGLC  G ++KA E+F  ++
Sbjct: 412 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              ++  +V Y ++I G C      +A  L   +  +GV+P+V+T+ V++  LCK G + 
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 525

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA+ LL  M   G  PN  T++TL+      G +  + +L   M+S G
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 152/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R     + +++ +   L +    D  +SLFK + + G+   + TYN L+   CK G+ + 
Sbjct: 222 RNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWND 281

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G ++L  ++     P+ + F  L+     E ++ EA  L+ ++   G  PN+ITY+TL++
Sbjct: 282 GALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMD 341

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C       A N+ + M          C P+ VT+T++I G C    VD   ++F  + 
Sbjct: 342 GYCMQNRLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDDGMKVFRNIS 395

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + +  + VTY+ L+ GFC +     A  L  EM+  GV PDV+T+ +++D LC NGK++
Sbjct: 396 KRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLDGLCDNGKLE 455

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  + E +    ++     ++T+++G C  G+V  A  LF S+   G K  V +Y
Sbjct: 456 KALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 511



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L K   ++    L K + S  + P++ T+N+L++ F K G++     +  
Sbjct: 263 VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++    +P+ + + +L+ G C ++R+ EA  +   +    C P+++T+++LI G C   
Sbjct: 323 EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK 382

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                + +F  ++    K G+V   N VTY+ ++ G C+ G +  A+ELF +M    + P
Sbjct: 383 RVDDGMKVFRNIS----KRGLV--ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLP 436

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV+TY  L+ G C      +A  +  ++    +   +V +  I++ +CK GK+++A  L 
Sbjct: 437 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF 496

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +  +GV PN  T++ ++ G C  G ++ A  L   ME  G
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538


>gi|359485438|ref|XP_003633275.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 572

 Score =  257 bits (656), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 130/311 (41%), Positives = 187/311 (60%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A  +F+ ML MRP PP +  F+ L   + + KHY TVLSL+K+++S G+  + YT 
Sbjct: 34  TIDDALSLFNRMLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTL 92

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+   F VLG IL+  + P    FT+LI+GLC E +I EA  LF K+  
Sbjct: 93  NILINSFCHLNRLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTG 152

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+TY TLINGLC+ G+T  A+     M   N      C+P  V Y+TIID LCK
Sbjct: 153 EGFQPDVLTYGTLINGLCKVGNTSTAIRFLRSMEQRN------CRPTVVVYSTIIDSLCK 206

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  + +A  LF  M  K I+P+  TY+SLIHG C    W EA  L   M+ + + PD +T
Sbjct: 207 DRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHRKIMPDQLT 266

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++D LCK G + +A  ++++MI   + P+  T+++LMDG CL   +     +F +M 
Sbjct: 267 FNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMV 326

Query: 386 SMGCKHTVFSY 396
             GC  +V SY
Sbjct: 327 RKGCVPSVISY 337



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/299 (31%), Positives = 159/299 (53%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P +  ++ +   L K +     LSLF  + + G+ P+ +TY+ LI+  C +G 
Sbjct: 185 MEQRNCRPTVVVYSTIIDSLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGH 244

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
                 +   ++     PD + F +L+  LC E  +++A  +   +     KP+V+TY++
Sbjct: 245 WKEAIRLFYAMIHRKIMPDQLTFNTLVDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNS 304

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L++G C        +N+F+ M          C P+ ++YTT+I+G CK   +DKA  LF 
Sbjct: 305 LMDGHCLRSEMGKTVNVFDTMVRKG------CVPSVISYTTLINGYCKIQIMDKAMGLFE 358

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  + + PD VTYN+LIHG C+     +A  L  EM+  G  PD+VT+ ++ D LCKN 
Sbjct: 359 EMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNH 418

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ EA  LL+++    ++P+   +S +MDG C  G +  A++LF  + S G    V +Y
Sbjct: 419 RLAEAMVLLKVIEGTNLDPDIHIYSIVMDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 477



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  ML    SP   T  +L+ G L    H+   + LF  +    + PD  T+N L
Sbjct: 212 EALSLFSDMLAKGISPNNFTYSSLIHG-LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTL 270

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G V     V+  +++S   PD V + SL+ G C  S + +   +F  +   GC
Sbjct: 271 VDALCKEGMVVKAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTVNVFDTMVRKGC 330

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+VI+Y+TLING C+      A+ LFEEM+      G++  P+TVTY T+I GLC  G 
Sbjct: 331 VPSVISYTTLINGYCKIQIMDKAMGLFEEMSQQ----GLI--PDTVTYNTLIHGLCHVGR 384

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M      PD+VTY  L    C  +   EA  LL  +    + PD+  +++
Sbjct: 385 LRDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSI 444

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +MD +C+ G+++ A  L   +  +G++P+  T++ +++G C  G +  A +LF  M+  G
Sbjct: 445 VMDGMCRAGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENG 504

Query: 389 CKHTVFSY 396
           C     +Y
Sbjct: 505 CSPNACTY 512



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 148/293 (50%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M+     P  +T  +L+ G   +++   TV ++F  +   G  P + +Y  L
Sbjct: 282 KAHYVVDVMIQSDLKPDVVTYNSLMDGHCLRSEMGKTV-NVFDTMVRKGCVPSVISYTTL 340

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+  +     +   + +    PD V + +LI GLC   R+ +A ALF ++  +G 
Sbjct: 341 INGYCKIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVVYGQ 400

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY  L + LC+      A+ L + +   N        P+   Y+ ++DG+C+ G 
Sbjct: 401 IPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTN------LDPDIHIYSIVMDGMCRAGE 454

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF ++  K ++PDV TY  +I+G C      EA+ L  EM + G  P+  T+N+
Sbjct: 455 LEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENGCSPNACTYNL 514

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I     +N +   A +L + M+ RG + + ST + L++     G     K++ 
Sbjct: 515 ITRGFLRNNETLRAIQLFQEMLSRGFSIDVSTTTLLVEMLSDDGLDQSVKQIL 567


>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
 gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
          Length = 613

 Score =  256 bits (655), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 131/309 (42%), Positives = 191/309 (61%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F  M+ + P P  +  F    G  AK K Y TV+SL  +++   +  ++Y+ NI
Sbjct: 75  DDALASFYRMVRINPRPS-VVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINC C++  V     VLG++ +    PDA+ F +LI GLC E +I EA  LF ++   G
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PNVI+Y+T+INGLC+TG+T +A+++F++M   NG     CKPN VTY+TIID LCK+ 
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQ-NG-----CKPNVVTYSTIIDSLCKDR 247

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A E   +M ++ I P+V TYNS++HGFC     NEA  L  EM+ + V P+ VTF 
Sbjct: 248 LVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFT 307

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G + EA  + E M  +GV P+ ST++ LMDG+CL   +N AK++F  M   
Sbjct: 308 ILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRK 367

Query: 388 GCKHTVFSY 396
           GC     SY
Sbjct: 368 GCAPGAHSY 376



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +   L K +  +  +     +   G+ P+++TYN +++ FC +G+++    +
Sbjct: 231 PNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEATRL 290

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P+ V FT L+ GLC E  + EA  +F  +   G +P++ TY+ L++G C 
Sbjct: 291 FKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNALMDGYCL 350

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +FE M          C P   +Y  +I+G CK   +D+AK L  +M  K +
Sbjct: 351 QRLMNEAKKVFEIMIRKG------CAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKAL 404

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NPD VTY++L+ G C      EA  L  EM   G  P++VT+ +++D  CK+G +DEA +
Sbjct: 405 NPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYGPHPNLVTYVILLDGFCKHGHLDEALK 464

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M  + + PN   ++ L++G  + G++  AKELF  +   G +  + +Y
Sbjct: 465 LLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTY 516



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/281 (33%), Positives = 144/281 (51%), Gaps = 7/281 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M+  R   P   +F +L   L K         +F+ +   G+ PD+ TYN 
Sbjct: 285 NEATRLFKEMVG-RDVMPNTVTFTILVDGLCKEGMVSEARLVFETMTEKGVEPDISTYNA 343

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C    ++    V   ++R    P A ++  LI G C   R+ EA +L  ++    
Sbjct: 344 LMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRRMDEAKSLLAEMYHKA 403

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYSTL+ GLC+ G    ALNLF+EM +    +G    PN VTY  ++DG CK G
Sbjct: 404 LNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCS----YGP--HPNLVTYVILLDGFCKHG 457

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +L   MK+K + P++V Y  LI G   A     A  L  ++   G +PD+ T+ 
Sbjct: 458 HLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVAKELFSKLFGDGTRPDIRTYT 517

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           V++  L K G  DEA  L   M   G  PN+ +++ ++ GF
Sbjct: 518 VMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYNVMIQGF 558



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 85/279 (30%), Positives = 143/279 (51%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M   +   P ++++N L       +  +    +F+ +   G  P  ++YNI
Sbjct: 320 SEARLVFETMTE-KGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNI 378

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  R+     +L  +      PD V +++L++GLC   R  EA  LF ++ ++G
Sbjct: 379 LINGYCKSRRMDEAKSLLAEMYHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMCSYG 438

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++TY  L++G C+ GH   AL L + M           +PN V YT +I+G+   G
Sbjct: 439 PHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKK------LEPNIVHYTILIEGMFIAG 492

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF ++      PD+ TY  +I G       +EA  L  +M D G  P+  ++N
Sbjct: 493 KLEVAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDGFLPNSCSYN 552

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           V++    +N     A RL++ M+ +  + N STF  L+D
Sbjct: 553 VMIQGFLQNQDSSTAIRLIDEMVGKRFSVNLSTFQMLLD 591



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 142/288 (49%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP + ++N +          +    LFK +    + P+  T+ IL++  CK G VS 
Sbjct: 262 RGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSE 321

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             +V   +      PD   + +L+ G C +  + EA  +F  +   GC P   +Y+ LIN
Sbjct: 322 ARLVFETMTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILIN 381

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++     A +L  EM      +     P+TVTY+T++ GLC+ G   +A  LF +M 
Sbjct: 382 GYCKSRRMDEAKSLLAEM------YHKALNPDTVTYSTLMQGLCQLGRPKEALNLFKEMC 435

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
               +P++VTY  L+ GFC     +EA  LL  M ++ ++P++V + ++++ +   GK++
Sbjct: 436 SYGPHPNLVTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLE 495

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            A  L   +   G  P+  T++ ++ G    G  + A +LF  ME  G
Sbjct: 496 VAKELFSKLFGDGTRPDIRTYTVMIKGLLKEGLSDEAYDLFRKMEDDG 543



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 62/128 (48%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F +M   N  P VV +   +  F     ++    L  +M    V  +V + N+
Sbjct: 74  VDDALASFYRMVRINPRPSVVEFGKFLGSFAKKKQYSTVVSLCNQMDLFRVTHNVYSLNI 133

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LC+   +D +  +L  M   G++P+  TF+ L++G C  G++  A ELF  M   G
Sbjct: 134 LINCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRG 193

Query: 389 CKHTVFSY 396
            +  V SY
Sbjct: 194 HEPNVISY 201


>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
 gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
          Length = 616

 Score =  256 bits (654), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 133/310 (42%), Positives = 196/310 (63%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY-DTVLSLFKRLNSTGLFPDLYTYN 146
           ++A   F++ML+ +P P  +  FN L   + K +HY D V+SL K++   GL PD YT +
Sbjct: 103 DDALAYFNHMLHRKPRPC-IIQFNKLLSAIVKMRHYHDAVISLSKQMELAGLSPDTYTLH 161

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LINCF ++ RV  GF VL +I++       V F +LI GLC   +  +A  LF  + A 
Sbjct: 162 MLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFDDMVAR 221

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P+V TY+T+INGLC+ G T+ A  LF +M    G+ G  C+P+ VTY+TIID LCK+
Sbjct: 222 GYQPDVHTYTTIINGLCKIGETVAAAGLFRKM----GEAG--CQPDVVTYSTIIDSLCKD 275

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V++A ++F  MK K I+P++ TYNSLI G C  + W EA+ +L EMM   + P++VTF
Sbjct: 276 RRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 335

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +++++  CK G + EA  +L+ M   GV PN  T+S+LM+G+ L   V  A++LF  M +
Sbjct: 336 SLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMIT 395

Query: 387 MGCKHTVFSY 396
            GCK  VFSY
Sbjct: 396 KGCKPDVFSY 405



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 169/308 (54%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+  R   P + ++  +   L K         LF+++   G  PD+ TY+ +
Sbjct: 210 QAVELFDDMV-ARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTI 268

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK  RV+    +   +     +P+   + SLI+GLC  SR  EA+A+  ++ +   
Sbjct: 269 IDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNI 328

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++T+S LIN  C+ G+   A  + + M     + GV  +PN VTY+++++G   +  
Sbjct: 329 MPNIVTFSLLINIFCKEGNVFEARGVLKTMT----EMGV--EPNVVTYSSLMNGYSLQAE 382

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A++LF  M  K   PDV +YN LI+G+C A    EA  L  EM+ QG+ PD+V++N 
Sbjct: 383 VVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNT 442

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC+ G++ EA  L + M+  G  P+  T+S L+DGFC  G +  A  LF +M+S  
Sbjct: 443 LIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTY 502

Query: 389 CKHTVFSY 396
            K  +  Y
Sbjct: 503 LKPNMVMY 510



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 164/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM   +   P + ++N L   L     +    ++   + S  + P++ T+++
Sbjct: 279 NEALDIFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 337

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FCK G V     VL  +      P+ V ++SL+ G   ++ ++EA  LF  +   G
Sbjct: 338 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKG 397

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+V +Y+ LING C+      A  LF EM +          P+ V+Y T+IDGLC+ G
Sbjct: 398 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG------LTPDIVSYNTLIDGLCQLG 451

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +LF  M      PD+ TY+ L+ GFC      +A  L   M    ++P++V +N
Sbjct: 452 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 511

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D +CK+  + EA +L   + ++G+ PN   ++T+++G C  G ++ A E F +ME  
Sbjct: 512 ILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEED 571

Query: 388 GCKHTVFSY 396
           GC    FSY
Sbjct: 572 GCPPNEFSY 580



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 7/237 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  +   P + S+N+L     K K       LF  +   GL PD+ +YN L
Sbjct: 385 EARKLFDVMIT-KGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTL 443

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C++GR+     +   +L +   PD   ++ L+ G C +  + +A  LF  +++   
Sbjct: 444 IDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYL 503

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPN++ Y+ LI+ +C++ +   A  LF E+      F    +PN   YTTII+GLCKEG 
Sbjct: 504 KPNMVMYNILIDAMCKSRNLKEARKLFSEL------FVQGLQPNVQIYTTIINGLCKEGL 557

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +D+A E F  M++    P+  +YN +I GF    D + A  L+ EM ++G   DV T
Sbjct: 558 LDEALEAFRNMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 136/272 (50%), Gaps = 7/272 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M  M   P  +T  +L+ G   + +  +    LF  + + G  PD+++YNIL
Sbjct: 350 EARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVVEA-RKLFDVMITKGCKPDVFSYNIL 408

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  R+     +   ++    TPD V++ +LI GLC   R+ EA  LF  +   G 
Sbjct: 409 INGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGN 468

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ TYS L++G C+ G+   A  LF  M +         KPN V Y  +ID +CK   
Sbjct: 469 LPDLCTYSILLDGFCKQGYLAKAFRLFRAMQS------TYLKPNMVMYNILIDAMCKSRN 522

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A++LF ++  + + P+V  Y ++I+G C     +EA      M + G  P+  ++NV
Sbjct: 523 LKEARKLFSELFVQGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPNEFSYNV 582

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           I+    ++     A +L+  M  +G   + +T
Sbjct: 583 IIRGFLQHKDESRAVQLIGEMREKGFVADVAT 614


>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 652

 Score =  255 bits (651), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 195/309 (63%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ +L  R + PP   FN + G L K+KHY TVL L +++   G+ P+L   NI
Sbjct: 67  DDAVSLFNRLLR-RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC++G +   F V  +IL+  + PD + FT+LIKGLC + +I +A     K+ A G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLCLKGQIQQAFLFHDKVVALG 185

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + I+Y TLI+GLC+ G T  AL+L + + +GN     + +PN V Y TIID +CK  
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRV-DGN-----LVQPNVVMYNTIIDSMCKVK 239

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A +LF +M  K I+PDVVTY++LI GFC     N+A  L  +M+ + ++PDV TFN
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFN 299

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  CK+GKM E   + ++M+ +G+ PN  T+++LMDG+CL   VN AK +F +M   
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 388 GCKHTVFSY 396
           G    + SY
Sbjct: 360 GVNPDIQSY 368



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 175/302 (57%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF +F  M++   SP  +T   L+ G     K  D +  LF ++    + PD+YT+NI
Sbjct: 242 NEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAI-DLFNKMILENIKPDVYTFNI 300

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N FCK G++  G  V   +++    P+ V + SL+ G C    + +A ++F  +   G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ +YS +ING C+      A+NLF+EM   N        P+ VTY+++IDGL K G
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN------IIPDVVTYSSLIDGLSKSG 414

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +L  QM D+ + P + TYNS++   C  +  ++A  LL ++ D+G+QP++ T++
Sbjct: 415 RISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYS 474

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  LC++GK+++A ++ E ++++G N N  T++ ++ GFC+ G  N A  L   ME  
Sbjct: 475 ILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDN 534

Query: 388 GC 389
           GC
Sbjct: 535 GC 536



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   + K K  +    LF  + S G+ PD+ TY+ LI+ FC +G+++    +
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDL 282

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     PD   F  L+   C + ++ E   +F  +   G KPN +TY++L++G C 
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  MA G         P+  +Y+ +I+G CK    D+A  LF +M  KNI
Sbjct: 343 VKEVNKAKSIFNTMAQGG------VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+SLI G   +   + A  L+ +M D+GV P + T+N I+D LCK  ++D+A  
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIA 456

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  +  +G+ PN  T+S L+ G C +G++  A+++F  +   G    V +Y
Sbjct: 457 LLTKLKDKGIQPNMYTYSILIKGLCQSGKLEDARKVFEGLLVKGHNLNVDTY 508



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 158/288 (54%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+  L   L K       L L +R++   + P++  YN +I+  CK+  V+  F +   +
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +    +PD V +++LI G C   ++ +A  LF K+     KP+V T++ L+N  C+ G  
Sbjct: 252 ISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                +F+ M     K G+  KPN VTY +++DG C    V+KAK +F  M    +NPD+
Sbjct: 312 KEGKTVFDMMM----KQGI--KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI 365

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            +Y+ +I+GFC    ++EA  L  EM  + + PDVVT++ ++D L K+G++  A +L++ 
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P   T+++++D  C   +V+ A  L   ++  G +  +++Y
Sbjct: 426 MHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTY 473



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 85/268 (31%), Positives = 136/268 (50%), Gaps = 7/268 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E   +FD M+  +   P   ++N L       K  +   S+F  +   G+ PD+ +Y+I+
Sbjct: 313 EGKTVFDMMMK-QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIM 371

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN FCK+ +      +   + R    PD V ++SLI GL    RI  A  L  ++   G 
Sbjct: 372 INGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGV 431

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P + TY+++++ LC+      A+ L  ++ +         +PN  TY+ +I GLC+ G 
Sbjct: 432 PPTIRTYNSILDALCKIHQVDKAIALLTKLKDKG------IQPNMYTYSILIKGLCQSGK 485

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A+++F  +  K  N +V TY  +I GFC    +NEA  LL +M D G  PD  T+ +
Sbjct: 486 LEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYEI 545

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNP 356
           I+  L K  + D A +LL  MI RGV P
Sbjct: 546 IILSLFKKDENDMAEKLLREMIARGVRP 573



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/239 (32%), Positives = 125/239 (52%), Gaps = 6/239 (2%)

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     +  R+LR   TP A  F  ++  L           L  K++  G KPN++  + 
Sbjct: 66  VDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LIN  C+ G    A ++F ++     K G V  P+T+T+TT+I GLC +G + +A     
Sbjct: 126 LINCFCQLGLIPFAFSVFAKIL----KMGYV--PDTITFTTLIKGLCLKGQIQQAFLFHD 179

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           ++     + D ++Y +LIHG C   +   A  LL  +    VQP+VV +N I+D +CK  
Sbjct: 180 KVVALGFHFDQISYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVK 239

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++EA  L   MI +G++P+  T+S L+ GFC+ G++N A +LF  M     K  V+++
Sbjct: 240 LVNEAFDLFSEMISKGISPDVVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTF 298



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 71/147 (48%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K N ++Y++          VD A  LF ++  +N  P    +N ++     +  ++    
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  +M  +G++P++V  N++++  C+ G +  A  +   ++  G  P+T TF+TL+ G C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLIKGLC 166

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
           L G++  A      + ++G      SY
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISY 193


>gi|356529495|ref|XP_003533326.1| PREDICTED: uncharacterized protein LOC100779660 [Glycine max]
          Length = 1205

 Score =  254 bits (650), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 135/309 (43%), Positives = 190/309 (61%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NI
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG+++ GF VL +IL+  + PD V   +LIKGLC + ++ +A     KL A G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++Y TLING+C+ G T  A+ L +++       G + KPN V Y+TIID LCK  
Sbjct: 160 FQLNQVSYGTLINGVCKIGDTRAAIKLLQKID------GRLTKPNVVMYSTIIDALCKYQ 213

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ DVVTY++LI+GFC      EA  LL EM+ + + P+V T+N
Sbjct: 214 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYN 273

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  +L +M+   V P+  T+STLMDG+ L   V  A+ +F +M  M
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 334 GVTPDVHTY 342



 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 158/270 (58%), Gaps = 8/270 (2%)

Query: 121  KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
            KHY T +SL  RL   G+ PDL+T NILINCFC MG+++  F +L +IL+  + PD + F
Sbjct: 940  KHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITF 999

Query: 181  TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            T+LI GLC + ++ +A     KL A G + N ++Y TLING+C+ G T  A+ L  ++  
Sbjct: 1000 TTLINGLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKID- 1058

Query: 241  GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                 G + KP+ V Y TIID LCK   V KA  LF +M  K I+ DVVTYN+LI+GFC 
Sbjct: 1059 -----GRLTKPDVVMYNTIIDALCKHQLVSKAYGLFFEMNVKGISADVVTYNTLIYGFCI 1113

Query: 301  ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK--MDEASRLLELMILRGVNPNT 358
                 EA  LL +M+ + + P+V T+N+++D LCK GK  +DE+  +L  M   G   N 
Sbjct: 1114 VGKLKEAIGLLNKMVLKTINPNVRTYNILVDALCKEGKDLLDESLSMLSKMEDNGCKANA 1173

Query: 359  STFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             TF  ++         +  ++L   M + G
Sbjct: 1174 VTFEIIISALFEKDENDKVEKLLHEMIARG 1203



 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 98/302 (32%), Positives = 163/302 (53%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +F  M     S   +T   L++G   + K  + +  L   +    + P++YTYNI
Sbjct: 216 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI-GLLNEMVLKTINPNVYTYNI 274

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G+V     VL  +L++C  PD + +++L+ G      + +A  +F  +   G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TY+ LING C+      ALNLF+EM   N        P  VTY+++IDGLCK G
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCKSG 388

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +    +L  +M D+    +V+TY+SLI G C     + A  L  +M DQG++P+  TF 
Sbjct: 389 RIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNTFTFT 448

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++ +A  + + ++ +G + N  T++ ++DG C  G +  A  +   ME  
Sbjct: 449 ILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDN 508

Query: 388 GC 389
           GC
Sbjct: 509 GC 510



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 158/299 (52%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R + P +  ++ +   L K +       LF  +   G+  D+ TY+ LI  FC  G+
Sbjct: 190 IDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGK 249

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  ++     P+   +  L+  LC E ++ EA ++   +     KP+VITYST
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYST 309

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L++G         A ++F  M+      GV   P+  TYT +I+G CK   VD+A  LF 
Sbjct: 310 LMDGYFLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKNKMVDEALNLFK 363

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  KN+ P +VTY+SLI G C +        L+ EM D+G   +V+T++ ++D LCKNG
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITYSSLIDGLCKNG 423

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +D A  L   M  +G+ PNT TF+ L+DG C  GR+  A+E+F  + + G    V++Y
Sbjct: 424 HLDRAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 143/296 (48%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP   + N L   L         L    +L + G   +  +Y  LIN  CK+G    
Sbjct: 123 RGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRA 182

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L +I      P+ V ++++I  LC    + EA  LF+++   G   +V+TYSTLI 
Sbjct: 183 AIKLLQKIDGRLTKPNVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIY 242

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G    A+ L  EM            PN  TY  ++D LCKEG V +AK +   M 
Sbjct: 243 GFCIEGKLKEAIGLLNEMVLK------TINPNVYTYNILVDALCKEGKVKEAKSVLAVML 296

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              + PDV+TY++L+ G+    +  +A  +   M   GV PDV T+ ++++  CKN  +D
Sbjct: 297 KACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHTYTILINGFCKNKMVD 356

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  L + M  + + P   T+S+L+DG C +GR+ +  +L   M   G    V +Y
Sbjct: 357 EALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEMHDRGQPANVITY 412



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/252 (35%), Positives = 127/252 (50%), Gaps = 17/252 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC-----LAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           EA  +   ML     P  +T   L+ G      + K +H    +SL       G+ PD++
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM------GVTPDVH 340

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY ILIN FCK   V     +   + +    P  V ++SLI GLC   RI     L  ++
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM 400

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G   NVITYS+LI+GLC+ GH   A+ LF +M +         +PNT T+T ++DGL
Sbjct: 401 HDRGQPANVITYSSLIDGLCKNGHLDRAIALFNKMKDQG------IRPNTFTFTILLDGL 454

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +  A+E+F  +  K  + +V TYN +I G C      EA  +L +M D G  PD 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMIDGHCKQGLLEEALTMLSKMEDNGCIPDA 514

Query: 324 VTFNVIMDELCK 335
           VTF +I+  L K
Sbjct: 515 VTFEIIIIALFK 526



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 71/147 (48%)

Query: 250  KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            +P+  T   +I+  C  G +     +  ++  +  +PD +T+ +LI+G C     N+A  
Sbjct: 958  QPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLINGLCLKGQVNKALH 1017

Query: 310  LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
               +++ QG Q + V++  +++ +CK G    A +LL  +  R   P+   ++T++D  C
Sbjct: 1018 FHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKPDVVMYNTIIDALC 1077

Query: 370  LTGRVNHAKELFVSMESMGCKHTVFSY 396
                V+ A  LF  M   G    V +Y
Sbjct: 1078 KHQLVSKAYGLFFEMNVKGISADVVTY 1104



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F +M      P ++ +N ++  F     ++ A  L   +  +G+QPD++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C  G++     +L  ++ RG  P+T T +TL+ G CL G+V  A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 389 CKHTVFSY 396
            +    SY
Sbjct: 160 FQLNQVSY 167



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 64/125 (51%)

Query: 272  AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
            A  L  +++ K I PD+ T N LI+ FC+         +L +++ +G  PD +TF  +++
Sbjct: 945  AVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFNFSILAKILKRGYHPDTITFTTLIN 1004

Query: 332  ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             LC  G++++A    + ++ +G   N  ++ TL++G C  G    A +L   ++    K 
Sbjct: 1005 GLCLKGQVNKALHFHDKLLAQGFQLNQVSYGTLINGVCKIGDTRAAIKLLRKIDGRLTKP 1064

Query: 392  TVFSY 396
             V  Y
Sbjct: 1065 DVVMY 1069


>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
 gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  254 bits (649), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 184/309 (59%), Gaps = 6/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++ML+  P P  +    LL   +   ++Y  V+SL K++   GL PD+YT +I
Sbjct: 76  DDALASFNHMLHREPLPCIIQFTKLLSAIVKMGQYYGAVISLSKQMELAGLSPDIYTLSI 135

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+CF  + RV   F V  ++++    PDAV F +LI GLC   +  +A   F   +A G
Sbjct: 136 LIDCFSHLQRVDLAFSVFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASG 195

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P V TY+T+INGLC+ G T  A  LF++M          C+PN VTY  +ID LCK+ 
Sbjct: 196 CQPTVYTYTTIINGLCKIGETTAAAGLFKKMEEAG------CQPNVVTYNILIDSLCKDK 249

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ++F  MK K I+PD+ TYNSLI G C    W EA+ LL EM    + P++ TFN
Sbjct: 250 LVNEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFN 309

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D +CK GK+ EA  + + M   GV P+  T+S+LM G+ L   +  A++LF +M + 
Sbjct: 310 VLVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITK 369

Query: 388 GCKHTVFSY 396
           GCK   FSY
Sbjct: 370 GCKPDAFSY 378



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 159/309 (51%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM   R SP   T +N L   L   + +    +L   + S  + P+++T+N+
Sbjct: 252 NEALDIFSYMKAKRISPDIFT-YNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNV 310

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G+VS    V   +      PD V ++SL+ G      I+EA  LF  +   G
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+  +Y+ LI G C+      A  LF EM +          P+ V Y T+I GLC+ G
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQG------LTPDNVNYNTLIHGLCQLG 424

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A++LF  M      PD+ TY+ L+ GFC      +A  L   M    ++PD+  +N
Sbjct: 425 RLREAQDLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYN 484

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D +CK G + +A +L   + ++G+ PN   ++T+++  C  G ++ A E F +ME  
Sbjct: 485 ILIDAMCKFGNLKDARKLFSELFVQGLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGD 544

Query: 388 GCKHTVFSY 396
           GC    FSY
Sbjct: 545 GCPPDEFSY 553


>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 602

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 121/326 (37%), Positives = 197/326 (60%), Gaps = 11/326 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     I  I  ++A  +F  M+  RP  P L  F+  F  +A+TK ++ VL   
Sbjct: 57  RERLRSG----IVDIKKDDAIALFQEMIRSRP-LPGLVDFSRFFSAIARTKQFNLVLDFC 111

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K+L   G+  ++YT NI+INCFC+  +    + VLG++++  + PD   F +LI GLC E
Sbjct: 112 KQLELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLE 171

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            ++ +A  L  ++   GC+P+++TY++++NG+CR+G T +A ++  +M   N       K
Sbjct: 172 GKVSKAVVLVDRMVENGCQPDMVTYNSIVNGICRSGDTSLAFDMLRKMEERN------VK 225

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            +  TY+TIID LC++G +D A  LF +M+ K I   VVTYNSL+ G C A  WN+   L
Sbjct: 226 ADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKAGKWNDGALL 285

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M+ + + P+V+TFNV++D   K GK+ EA+ L + MI RG++PN  T++TLMDG+C+
Sbjct: 286 LKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCM 345

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             R++ A  +   M    C   + ++
Sbjct: 346 QNRLSEANNMLDLMVRNKCSPDIVTF 371



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN+L     K         L+K + + G+ P++ TYN L++ +C   R+S 
Sbjct: 292 REIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPNIITYNTLMDGYCMQNRLSE 351

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++R+  +PD V FTSLIKG C   R+ +   +F  +   G   N +TYS L+ 
Sbjct: 352 ANNMLDLMVRNKCSPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQ 411

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++G   +A  LF+EM +     GV+  P+ +TY  ++DGLC  G ++KA E+F  ++
Sbjct: 412 GFCQSGKIKLAEELFQEMVS----HGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQ 465

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              ++  +V Y ++I G C      +A  L   +  +GV+P+V+T+ V++  LCK G + 
Sbjct: 466 KSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 525

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA+ LL  M   G  PN  T++TL+      G +  + +L   M+S G
Sbjct: 526 EANILLRKMEEDGNAPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 573



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 156/305 (51%), Gaps = 8/305 (2%)

Query: 94  FDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           FD +  M  R     + +++ +   L +    D  +SLFK + + G+   + TYN L+  
Sbjct: 213 FDMLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRG 272

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK G+ + G ++L  ++     P+ + F  L+     E ++ EA  L+ ++   G  PN
Sbjct: 273 LCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYKEMITRGISPN 332

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           +ITY+TL++G C       A N+ + M          C P+ VT+T++I G C    VD 
Sbjct: 333 IITYNTLMDGYCMQNRLSEANNMLDLMVRNK------CSPDIVTFTSLIKGYCMVKRVDD 386

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             ++F  +  + +  + VTY+ L+ GFC +     A  L  EM+  GV PDV+T+ +++D
Sbjct: 387 GMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLPDVMTYGILLD 446

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC NGK+++A  + E +    ++     ++T+++G C  G+V  A  LF S+   G K 
Sbjct: 447 GLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKP 506

Query: 392 TVFSY 396
            V +Y
Sbjct: 507 NVMTY 511



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 145/282 (51%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L K   ++    L K + S  + P++ T+N+L++ F K G++     +  
Sbjct: 263 VVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEGKLQEANELYK 322

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++    +P+ + + +L+ G C ++R+ EA  +   +    C P+++T+++LI G C   
Sbjct: 323 EMITRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTFTSLIKGYCMVK 382

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                + +F  ++    K G+V   N VTY+ ++ G C+ G +  A+ELF +M    + P
Sbjct: 383 RVDDGMKVFRNIS----KRGLV--ANAVTYSILVQGFCQSGKIKLAEELFQEMVSHGVLP 436

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV+TY  L+ G C      +A  +  ++    +   +V +  I++ +CK GK+++A  L 
Sbjct: 437 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLF 496

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +  +GV PN  T++ ++ G C  G ++ A  L   ME  G
Sbjct: 497 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 538


>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Vitis vinifera]
          Length = 644

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 127/311 (40%), Positives = 189/311 (60%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP +  F  +   + K K Y TVLSL ++++S G+  ++YT 
Sbjct: 54  TLDDALSSFNRMLHMHP-PPSIVDFAKILTSITKVKRYSTVLSLSRKMDSFGIPHNVYTL 112

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N+LIN FC + RV+  F VL +IL+    PD  +FT+LIKGLC E +I EA  LF K+  
Sbjct: 113 NVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEGQIGEALHLFDKMIW 172

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+ Y+TLINGLC+TGHT  A+ L   M  GN      C+P+ V Y T+I  LCK
Sbjct: 173 EGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGN------CQPDVVVYGTLIHSLCK 226

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +    +A  LF +M  K I+P++VT NSL++  C   +W   N LL EM+D  + P+ ++
Sbjct: 227 DRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVDSKIMPNAIS 286

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
              ++D LCK G + +A  ++++M   GV P+  T++ L+DG CL   ++ A ++F  M 
Sbjct: 287 LTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMV 346

Query: 386 SMGCKHTVFSY 396
             GC   VFSY
Sbjct: 347 HKGCAPNVFSY 357



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  L   L K +      +LF  + + G+ P++ T N L+   C +G   H   +
Sbjct: 212 PDVVVYGTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTL 271

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S   P+A++ T+++  LC E  + +A  +   +   G +P+V+TY+ LI+G C 
Sbjct: 272 LNEMVDSKIMPNAISLTTVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCL 331

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ +F+ M +        C PN  +Y T+I+G CK   +DKA  LF +M  + +
Sbjct: 332 RSEMDEAVKVFDMMVHKG------CAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKL 385

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+LIHG C+     +A  L  EM+  G  PD+VT+ +++D LCKN  +D+A  
Sbjct: 386 IPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMA 445

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ +    ++P+   ++ ++DG C  G +  A++LF ++ S G K  V++Y
Sbjct: 446 LLKAIEGSNLDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTY 497



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 158/303 (52%), Gaps = 11/303 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +AF +F  M+    SP  +T  +L++    L + KH +T+L+    +  + + P+  +  
Sbjct: 232 QAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLN---EMVDSKIMPNAISLT 288

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  CK G V+    V+  + +S   PD V +T+LI G C  S + EA  +F  +   
Sbjct: 289 TVVDALCKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSEMDEAVKVFDMMVHK 348

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC PNV +Y+TLING C+      A+ LFEEM            PNTVTY T+I GLC  
Sbjct: 349 GCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQK------LIPNTVTYNTLIHGLCHV 402

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A  LF +M      PD+VTY  L+   C     ++A  LL  +    + PD+  +
Sbjct: 403 GRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIY 462

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +++D +C+ G++++A  L   +  +G+ PN  T++ +  G C  G ++ A +LF+ M+ 
Sbjct: 463 TIVIDGMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDE 522

Query: 387 MGC 389
             C
Sbjct: 523 NAC 525



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 145/280 (51%), Gaps = 8/280 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M      P  +T   L+ G   +++  D  + +F  +   G  P++++YN L
Sbjct: 302 QAHDVVDMMFQSGVEPDVVTYTALIDGHCLRSE-MDEAVKVFDMMVHKGCAPNVFSYNTL 360

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+ R+     +   + R    P+ V + +LI GLC   R+ +A ALF ++ A G 
Sbjct: 361 INGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIALFREMVACGQ 420

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY  L++ LC+  H   A+ L + +   N        P+   YT +IDG+C+ G 
Sbjct: 421 IPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSN------LDPDIQIYTIVIDGMCRAGE 474

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  K + P+V TYN + HG C     +EA  L +EM +     D  T+N 
Sbjct: 475 LEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENACSADGCTYNT 534

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           I     +N +   A +LLE M+ RG + + ST +TL+ G 
Sbjct: 535 ITQGFLRNNETSRAIQLLEEMLARGFSCDVST-TTLLVGM 573



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 133/262 (50%), Gaps = 8/262 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M++ +   P + S+N L     K +  D  + LF+ +    L P+  TYN 
Sbjct: 336 DEAVKVFDMMVH-KGCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNT 394

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C +GR+     +   ++     PD V +  L+  LC    + +A AL   ++   
Sbjct: 395 LIHGLCHVGRLQDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSN 454

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++  Y+ +I+G+CR G    A +LF  +++         KPN  TY  +  GLCK G
Sbjct: 455 LDPDIQIYTIVIDGMCRAGELEDARDLFSNLSSKG------LKPNVWTYNIMTHGLCKRG 508

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +LF++M +   + D  TYN++  GF   N+ + A  LL EM+ +G   DV T  
Sbjct: 509 LLDEATKLFMEMDENACSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGFSCDVSTTT 568

Query: 328 VIMDELCKNG-KMDEASRLLEL 348
           +++  L  +G    EA +L ++
Sbjct: 569 LLVGMLSDDGLDQSEAHKLEDM 590


>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
 gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 131/310 (42%), Positives = 192/310 (61%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYN 146
           ++A   F++ML+ +P  P +  FN L   + + + +YD V+SL K++   GL P+  T N
Sbjct: 72  DDALASFNHMLHRKP-LPCIIQFNKLLSAIVRMRQYYDAVISLSKQMELAGLSPNTCTLN 130

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILINCFC M  V  GF VL ++++    P  + FT+LI GLC      +A  LF  + A 
Sbjct: 131 ILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFDDMVAR 190

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC+P+V TY+T+INGLC+ G T  A  L ++M    G+ G  C+P+ VTY+T+ID LCK+
Sbjct: 191 GCQPDVYTYTTIINGLCKMGETAAAAGLIKKM----GEVG--CQPDVVTYSTLIDSLCKD 244

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V++A ++F  MK K I+P VV+Y SLI G C  + W EA+ +L EM    + PD+VTF
Sbjct: 245 RLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTF 304

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++++D  CK G + EA  +L+ M   GV PN  T+++LM G+ L   V  A++LF  M +
Sbjct: 305 SLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMIT 364

Query: 387 MGCKHTVFSY 396
            GCK  VFSY
Sbjct: 365 RGCKPDVFSY 374



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 158/309 (51%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM   +   P + S+  L   L     +    ++   + S  + PD+ T+++
Sbjct: 248 NEALDIFSYM-KAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLNIMPDIVTFSL 306

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK G V     VL  +      P+ + + SL+ G   +  ++EA  LF  +   G
Sbjct: 307 LIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRG 366

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+V +YS LING C       A  LF EM +          PNTV+YTT+I   C+ G
Sbjct: 367 CKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQG------LTPNTVSYTTLIHAFCQLG 420

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+ELF  M      PD+ TY+ L+ GFC      +A  L   M    ++P++V + 
Sbjct: 421 KLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYT 480

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D +CK+G ++ A +L   + + G+ P+   ++T+++G C  G ++ A E F  ME  
Sbjct: 481 ILIDSMCKSGNLNHARKLFSELFVHGLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEED 540

Query: 388 GCKHTVFSY 396
           GC    FSY
Sbjct: 541 GCPPNEFSY 549



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 7/234 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  R   P + S+++L       K  D    LF  +   GL P+  +Y  L
Sbjct: 354 EARKLFDVMIT-RGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTL 412

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC++G++     +   +  + + PD   ++ L++G C +  + +A  LF  ++    
Sbjct: 413 IHAFCQLGKLREARELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYL 472

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPN++ Y+ LI+ +C++G+   A  LF E+      F    +P+   YTTII+GLCKEG 
Sbjct: 473 KPNLVMYTILIDSMCKSGNLNHARKLFSEL------FVHGLQPDVQIYTTIINGLCKEGL 526

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           +D+A E F +M++    P+  +YN +I GF    D + A  L+ EM D+G   D
Sbjct: 527 LDEALEAFRKMEEDGCPPNEFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFVAD 580


>gi|356529465|ref|XP_003533312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 133/309 (43%), Positives = 188/309 (60%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NI
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG+++ GF VL +IL+  + PD V   +LIKGLC + ++ +A     KL A G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++Y+TLING+C+ G T  A+    ++       G + KP+ V Y TIID +CK  
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRAAIKFLRKID------GRLTKPDVVMYNTIIDAMCKYQ 213

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ DVVTYN+LI+GFC      EA  LL EM+ + + P+V T+N
Sbjct: 214 LVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNEMVLKTINPNVYTYN 273

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  +L +M+   V P+  T+STLMDG+ L   V  A+ +F +M  M
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 334 GVTPDVHTY 342



 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 167/311 (53%), Gaps = 11/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +EA+ +F  M     S   +T   L++G   + K K     + L   +    + P++YTY
Sbjct: 216 SEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKE---AIGLLNEMVLKTINPNVYTY 272

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NIL++  CK G+V     VL  +L++C  PD + +++L+ G      + +A  +F  +  
Sbjct: 273 NILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSL 332

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+V TY+ LING C+      ALNLF+EM   N        P  VTY+++IDGLCK
Sbjct: 333 MGVTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCK 386

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +    +L  +M+D+    DV+TY+SLI G C     + A  L  +M DQ ++P++ T
Sbjct: 387 SGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFT 446

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F +++D LCK G++ +A  + + ++ +G + N  T++ +++G C  G +  A  +   ME
Sbjct: 447 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKME 506

Query: 386 SMGCKHTVFSY 396
             GC    F++
Sbjct: 507 DNGCIPNAFTF 517



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 156/296 (52%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R + P +  +N +   + K +       LF  +   G+  D+ TYN LI  FC +G++  
Sbjct: 193 RLTKPDVVMYNTIIDAMCKYQLVSEAYGLFSEMAVKGISADVVTYNTLIYGFCIVGKLKE 252

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++     P+   +  L+  LC E ++ EA ++   +     KP+VITYSTL++
Sbjct: 253 AIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMD 312

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G         A ++F  M+      GV   P+  TYT +I+G CK   VD+A  LF +M 
Sbjct: 313 GYFLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKNKMVDEALNLFKEMH 366

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            KN+ P +VTY+SLI G C +   +    L+ EM D+G   DV+T++ ++D LCKNG +D
Sbjct: 367 QKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLD 426

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  L   M  + + PN  TF+ L+DG C  GR+  A+E+F  + + G    V++Y
Sbjct: 427 RAIALFNKMKDQEIRPNIFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTY 482



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 139/271 (51%), Gaps = 17/271 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC-----LAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           EA  +   ML     P  +T   L+ G      + K +H      +F  ++  G+ PD++
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQH------VFNAMSLMGVTPDVH 340

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY ILIN FCK   V     +   + +    P  V ++SLI GLC   RI     L  ++
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           +  G   +VITYS+LI+GLC+ GH   A+ LF +M +         +PN  T+T ++DGL
Sbjct: 401 RDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE------IRPNIFTFTILLDGL 454

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +  A+E+F  +  K  + +V TYN +I+G C      EA  +L +M D G  P+ 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNA 514

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGV 354
            TF  I+  L K  + D+A +LL  MI RG+
Sbjct: 515 FTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F +M      P ++ +N ++  F     ++ A  L   +  +G+QPD++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C  G++     +L  ++ RG  P+T T +TL+ G CL G+V  A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 389 CKHTVFSY 396
            +    SY
Sbjct: 160 FQLNQVSY 167


>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 667

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 123/325 (37%), Positives = 197/325 (60%), Gaps = 11/325 (3%)

Query: 72  ERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK 131
           ER +S     I  I  ++A  +F  M+  RP  P L  F+  F  +A TK ++ VL   K
Sbjct: 35  ERLRSG----IVDIKEDDAIDLFQEMIRSRP-LPSLVDFSRFFSGVASTKQFNLVLDFCK 89

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           ++   G+  ++YT NI+INCFC+  +    + VLG++++  + PD   F +LI GLC ES
Sbjct: 90  KMELNGIAHNIYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLES 149

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++ EA  L  ++   GC+PNV+TY++++NG+C++G T +AL+L  +M   N       K 
Sbjct: 150 KVSEAVVLVARMVENGCQPNVVTYNSIVNGICKSGDTSLALDLLRKMDERN------VKA 203

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  TY+TIID LC++G +D A  LF +M+ K I   +VTYNSL+ G C A  WN+   LL
Sbjct: 204 DVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLL 263

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M  + + P+V+TFNV++D   K GK+ EA+ L + MI +G++PNT T+++LMDG+C+ 
Sbjct: 264 KDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQ 323

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            R++ A  +   M    C   + ++
Sbjct: 324 NRLSEANNMLDLMVRNNCSPDIVTF 348



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN+L     K         L+K + + G+ P+  TYN L++ +C   R+S 
Sbjct: 269 RKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNSLMDGYCMQNRLSE 328

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++R+  +PD V FTSLIKG C   R+ E   LF K+   G   N +TYS L+ 
Sbjct: 329 ANNMLDLMVRNNCSPDIVTFTSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQ 388

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++G   +A  LF+EM +     GV+  P+ +TY  ++DGLC  G ++KA E+F  ++
Sbjct: 389 GFCQSGKLEIAEELFQEMVS----LGVL--PDVMTYGILLDGLCDNGKLEKALEIFEDLQ 442

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +N D+V Y  +I G C      +A  L   +  +GV+P+V+T+ V++  LCK G + 
Sbjct: 443 KSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGSLS 502

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA+ LL  M   G  PN  T++TL+      G +  + +L   M+S G
Sbjct: 503 EANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCG 550



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 155/299 (51%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R     + +++ +   L +    D  +SLFK + + G+   L TYN L+   CK G+
Sbjct: 196 MDERNVKADVFTYSTIIDSLCRDGCIDAAISLFKEMETKGIKSSLVTYNSLVGGLCKAGK 255

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
            + G  +L  +      P+ + F  LI     E ++ EA  L+ ++   G  PN ITY++
Sbjct: 256 WNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYKEMITKGISPNTITYNS 315

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L++G C       A N+ + M   N      C P+ VT+T++I G CK   VD+  +LF 
Sbjct: 316 LMDGYCMQNRLSEANNMLDLMVRNN------CSPDIVTFTSLIKGYCKVKRVDEGMKLFR 369

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           ++  + +  + VTY+ L+ GFC +     A  L  EM+  GV PDV+T+ +++D LC NG
Sbjct: 370 KISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNG 429

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+++A  + E +    +N +   ++ +++G C  G+V  A  LF S+   G K  V +Y
Sbjct: 430 KLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTY 488



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 153/282 (54%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N L G L K   ++  + L K + S  + P++ T+N+LI+ F K G++     +  
Sbjct: 240 LVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEGKLQEANELYK 299

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++    +P+ + + SL+ G C ++R+ EA  +   +    C P+++T+++LI G C+  
Sbjct: 300 EMITKGISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTFTSLIKGYCKVK 359

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                + LF +++    K G+V   NTVTY+ ++ G C+ G ++ A+ELF +M    + P
Sbjct: 360 RVDEGMKLFRKIS----KRGLV--ANTVTYSILVQGFCQSGKLEIAEELFQEMVSLGVLP 413

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV+TY  L+ G C      +A  +  ++    +  D+V + +I++ +CK GK+++A  L 
Sbjct: 414 DVMTYGILLDGLCDNGKLEKALEIFEDLQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLF 473

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +  +GV PN  T++ ++ G C  G ++ A  L   ME  G
Sbjct: 474 CSLPCKGVKPNVMTYTVMISGLCKKGSLSEANILLRKMEEDG 515



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/246 (29%), Positives = 124/246 (50%), Gaps = 7/246 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+    SP  +T  +L+ G   K K  D  + LF++++  GL  +  TY+I
Sbjct: 327 SEANNMLDLMVRNNCSPDIVTFTSLIKG-YCKVKRVDEGMKLFRKISKRGLVANTVTYSI 385

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+  FC+ G++     +   ++     PD + +  L+ GLC   ++ +A  +F  L+   
Sbjct: 386 LVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFEDLQKSK 445

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +++ Y+ +I G+C+ G    A NLF  +       GV  KPN +TYT +I GLCK+G
Sbjct: 446 MNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCK----GV--KPNVMTYTVMISGLCKKG 499

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A  L  +M++    P+  TYN+LI       D   +  L+ EM   G   D  +  
Sbjct: 500 SLSEANILLRKMEEDGNEPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSADASSIK 559

Query: 328 VIMDEL 333
           +++D L
Sbjct: 560 MVIDML 565



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 98/198 (49%), Gaps = 8/198 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++++L     ++   +    LF+ + S G+ PD+ TY IL++  C  G++     +   
Sbjct: 381 VTYSILVQGFCQSGKLEIAEELFQEMVSLGVLPDVMTYGILLDGLCDNGKLEKALEIFED 440

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + +S    D V +T +I+G+C   ++ +A  LF  L   G KPNV+TY+ +I+GLC+ G 
Sbjct: 441 LQKSKMNLDIVMYTIIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKGS 500

Query: 228 TIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A  L  +M  +GN       +PN  TY T+I    ++G +  + +L  +MK    + 
Sbjct: 501 LSEANILLRKMEEDGN-------EPNDCTYNTLIRAHLRDGDLTASAKLIEEMKSCGFSA 553

Query: 287 DVVTYNSLIHGFCYANDW 304
           D  +   +I     A  W
Sbjct: 554 DASSIKMVIDMLSSAVWW 571


>gi|224123318|ref|XP_002319049.1| predicted protein [Populus trichocarpa]
 gi|222857425|gb|EEE94972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 127/310 (40%), Positives = 190/310 (61%), Gaps = 9/310 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ +L +RP PP +  FN L G L K KHY TV+SL K+++ + + P++YT  IL
Sbjct: 52  DAVASFNQLLGIRPLPP-VVVFNKLLGSLVKKKHYSTVISLCKQMDLSNIRPNVYTLTIL 110

Query: 149 INCFCKMGR--VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           INC C   R  V   F  LG++ +    P  V F +L+ GLC++++I++A  LF ++   
Sbjct: 111 INCLCHSNRDHVHFAFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAVKLFDEIGKM 170

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P++ITY+T+I GLC+ GHT  AL L ++M          CKP+ V Y T+ID LCK+
Sbjct: 171 GFAPSLITYTTIIKGLCKIGHTTNALQLLKKMEEKG------CKPDVVAYNTVIDSLCKD 224

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
              ++A   F +M D+ I P+VVTY+S++HGFC     NEA  L  +M+ + V P+ VTF
Sbjct: 225 RRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTF 284

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +++D LCK G + EA R+ E+M   GV P+  T+S LMDG+CL  +++ A++LF  M  
Sbjct: 285 TILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVG 344

Query: 387 MGCKHTVFSY 396
            G   +V  Y
Sbjct: 345 KGFAPSVRVY 354



 Score =  199 bits (505), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 164/299 (54%), Gaps = 7/299 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF     M  +   P  +T   LL G  +K K  D V  LF  +   G  P L TY  +I
Sbjct: 125 AFSALGKMFKLGLQPTHVTFGTLLNGLCSKAKIIDAV-KLFDEIGKMGFAPSLITYTTII 183

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              CK+G  ++   +L ++      PD VA+ ++I  LC + R  EA   F+++   G  
Sbjct: 184 KGLCKIGHTTNALQLLKKMEEKGCKPDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIP 243

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNV+TYS++++G C  G    A +LF++M   N        PNTVT+T ++DGLCKEG +
Sbjct: 244 PNVVTYSSILHGFCNLGQLNEATSLFKQMIGRN------VMPNTVTFTILVDGLCKEGMI 297

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A+ +F  M +  + PD  TY++L+ G+C  +  +EA  L   M+ +G  P V  +N++
Sbjct: 298 LEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNIL 357

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  CK+ +++EA  LL  M  R + P+T T+STLM GFC  GR   A++LF  M S G
Sbjct: 358 INGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG 416



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 161/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +  +  +  F  +   G+ P++ TY+ +++ FC +G+++    +
Sbjct: 209 PDVVAYNTVIDSLCKDRRANEAMYFFSEMVDQGIPPNVVTYSSILHGFCNLGQLNEATSL 268

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ V FT L+ GLC E  I+EA  +F  +   G +P+  TYS L++G C 
Sbjct: 269 FKQMIGRNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCL 328

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF+ M  G G       P+   Y  +I+G CK   +++AK L  +M D+++
Sbjct: 329 QSQMDEAQKLFDIMV-GKG-----FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRDL 382

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY++L+ GFC A     A  L  EM   G+ PD +T+++++D LCK+G +DEA R
Sbjct: 383 TPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFR 442

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M    + P+   ++ L+ G C  G++  A+ELF ++   G + +V +Y
Sbjct: 443 LLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTY 494



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 151/301 (50%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M+  R   P   +F +L   L K         +F+ +   G+ PD YTY+ 
Sbjct: 263 NEATSLFKQMIG-RNVMPNTVTFTILVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSA 321

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C   ++     +   ++   F P    +  LI G C   R+ EA  L +++    
Sbjct: 322 LMDGYCLQSQMDEAQKLFDIMVGKGFAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRD 381

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYSTL+ G C+ G   VA  LF+EM +    +G++  P+++TY+ ++DGLCK G
Sbjct: 382 LTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCS----YGLL--PDSITYSILLDGLCKHG 435

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L   M++  I P +  YN LI G C       A  L   +  +G+QP VVT+ 
Sbjct: 436 HLDEAFRLLKAMQESKIEPHICIYNILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYT 495

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++  L K G  +EA  +   M++ G  PN+ T++  + GF   G  ++A  L   M   
Sbjct: 496 VMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYNVAIQGFLRNGDPSNAVRLIEEMVGR 555

Query: 388 G 388
           G
Sbjct: 556 G 556



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 154/302 (50%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA   F  M++ +  PP + +++ +          +   SLFK++    + P+  T+ I
Sbjct: 228 NEAMYFFSEMVD-QGIPPNVVTYSSILHGFCNLGQLNEATSLFKQMIGRNVMPNTVTFTI 286

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G +     V   +  +   PDA  +++L+ G C +S++ EA  LF  +   G
Sbjct: 287 LVDGLCKEGMILEARRVFEMMTENGVEPDAYTYSALMDGYCLQSQMDEAQKLFDIMVGKG 346

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V  Y+ LING C++     A  L  EM + +        P+TVTY+T++ G C+ G
Sbjct: 347 FAPSVRVYNILINGHCKSRRLNEAKTLLSEMYDRD------LTPDTVTYSTLMQGFCQAG 400

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A++LF +M    + PD +TY+ L+ G C     +EA  LL  M +  ++P +  +N
Sbjct: 401 RPQVAQKLFKEMCSYGLLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESKIEPHICIYN 460

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  +C  GK++ A  L   + ++G+ P+  T++ ++ G    G  N A E+F  M   
Sbjct: 461 ILIQGMCNFGKLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVN 520

Query: 388 GC 389
           GC
Sbjct: 521 GC 522



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/279 (33%), Positives = 138/279 (49%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  +F+ M      P   T   L+ G CL      D    LF  +   G  P +  YNI
Sbjct: 299 EARRVFEMMTENGVEPDAYTYSALMDGYCLQS--QMDEAQKLFDIMVGKGFAPSVRVYNI 356

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  R++    +L  +     TPD V +++L++G C   R   A  LF ++ ++G
Sbjct: 357 LINGHCKSRRLNEAKTLLSEMYDRDLTPDTVTYSTLMQGFCQAGRPQVAQKLFKEMCSYG 416

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ ITYS L++GLC+ GH   A  L + M           +P+   Y  +I G+C  G
Sbjct: 417 LLPDSITYSILLDGLCKHGHLDEAFRLLKAMQESK------IEPHICIYNILIQGMCNFG 470

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+ELF  +  K I P VVTY  +I G       NEA  +  +M+  G  P+  T+N
Sbjct: 471 KLEAARELFSNLFVKGIQPSVVTYTVMISGLLKEGLSNEACEMFRKMVVNGCLPNSCTYN 530

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           V +    +NG    A RL+E M+ RG + ++STF  L+D
Sbjct: 531 VAIQGFLRNGDPSNAVRLIEEMVGRGFSADSSTFQMLLD 569


>gi|356529507|ref|XP_003533332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 135/309 (43%), Positives = 189/309 (61%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NI
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG+++ GF VL +IL+  + P  + FT+LIKGLC + ++ +A     KL A G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K + ++Y TLING+C+ G T  A+ L  ++       G + KPN   Y TIID LCK  
Sbjct: 160 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQ 213

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ DVVTY +LI+GFC A+   EA  LL EM+ + + P+V T+N
Sbjct: 214 LVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASKLKEAIGLLNEMVLKTINPNVYTYN 273

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  +L +M+   V P+  T+STLMDG+ L   +  A+ +F +M  M
Sbjct: 274 ILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333

Query: 388 GCKHTVFSY 396
           G    V SY
Sbjct: 334 GVTPDVHSY 342



 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/303 (32%), Positives = 162/303 (53%), Gaps = 9/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA+ +F  M     S   +T   L++G C+A        + L   +    + P++YTYN
Sbjct: 216 SEAYGLFSEMTAKGISADVVTYTTLIYGFCIASK--LKEAIGLLNEMVLKTINPNVYTYN 273

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           IL++  CK G+V     VL  +L++C  PD + +++L+ G      + +A  +F  +   
Sbjct: 274 ILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQHVFNAMSLM 333

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+V +Y+ LING C+      ALNLF+EM   N        P  VTY+++IDGLCK 
Sbjct: 334 GVTPDVHSYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCKS 387

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +    +L  +M+D+ I  +V+TYNSLI G C     + A  L  +M DQG++P   TF
Sbjct: 388 GRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQGIRPCSFTF 447

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +++D LCK G++ +A    + ++ +G + +   ++ +++G C  G +  A  +   ME 
Sbjct: 448 TILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEE 507

Query: 387 MGC 389
            GC
Sbjct: 508 NGC 510



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 155/299 (51%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R + P +  +N +   L K +       LF  + + G+  D+ TY  LI  FC   +
Sbjct: 190 IDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISADVVTYTTLIYGFCIASK 249

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  ++     P+   +  L+  LC E ++ EA  +   +     KP+VITYST
Sbjct: 250 LKEAIGLLNEMVLKTINPNVYTYNILVDALCKEGKVKEAKNVLAVMLKACVKPDVITYST 309

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L++G         A ++F  M+      GV   P+  +YT +I+G CK   VD+A  LF 
Sbjct: 310 LMDGYFLVYELKKAQHVFNAMS----LMGVT--PDVHSYTILINGFCKNKMVDEALNLFK 363

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  KN+ P +VTY+SLI G C +   +    L+ EM D+G+  +V+T+N ++D LCKNG
Sbjct: 364 EMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEMRDRGIPANVITYNSLIDGLCKNG 423

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +D A  L   M  +G+ P + TF+ L+DG C  GR+  A+E F  + + G    V+ Y
Sbjct: 424 HLDRAIALFNKMKDQGIRPCSFTFTILLDGLCKGGRLKDAQEAFQDLLTKGYHLDVYKY 482



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/271 (33%), Positives = 141/271 (52%), Gaps = 17/271 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC-----LAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           EA  +   ML     P  +T   L+ G      L K +H      +F  ++  G+ PD++
Sbjct: 287 EAKNVLAVMLKACVKPDVITYSTLMDGYFLVYELKKAQH------VFNAMSLMGVTPDVH 340

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           +Y ILIN FCK   V     +   + +    P  V ++SLI GLC   RI     L  ++
Sbjct: 341 SYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRISYVWDLIDEM 400

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           +  G   NVITY++LI+GLC+ GH   A+ LF +M +         +P + T+T ++DGL
Sbjct: 401 RDRGIPANVITYNSLIDGLCKNGHLDRAIALFNKMKDQG------IRPCSFTFTILLDGL 454

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +  A+E F  +  K  + DV  YN +I+G C      EA  +L +M + G  P+ 
Sbjct: 455 CKGGRLKDAQEAFQDLLTKGYHLDVYKYNVMINGHCKQGLLEEALTMLSKMEENGCVPNA 514

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           VTF++I++ L K  + D+A +LL  MI RG+
Sbjct: 515 VTFDIIINALFKKDENDKAEKLLRQMICRGL 545



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 66/128 (51%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F +M      P ++ +N ++  F     ++ A  L   +  +G+QPD++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKIKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C  G++     +L  ++ RG  P+T TF+TL+ G CL G+VN A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 159

Query: 389 CKHTVFSY 396
            K    SY
Sbjct: 160 IKFDQVSY 167


>gi|356529503|ref|XP_003533330.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 546

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/309 (43%), Positives = 189/309 (61%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN +    AK KHY T +SL  RL   G+ PDL T NI
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG+++ GF VL +IL+  + PD V   +LIKGLC + ++ +A     KL A G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++Y+TLING+C+ G T  A+ L  ++       G + KPN   Y+TIID LCK  
Sbjct: 160 FQLNQVSYATLINGVCKIGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQ 213

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ DVVTY++LI+GFC      EA  LL EM+ + + P+V T+N
Sbjct: 214 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAIGLLNEMVLKTINPNVYTYN 273

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  +L +M+   V P+  T+STLMDG+ L   V  A+ +F +M  M
Sbjct: 274 ILVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLM 333

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 334 GVTPDVHTY 342



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 167/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +F  M     S   +T   L++G   + K  + +  L   +    + P++YTYNI
Sbjct: 216 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIEGKLKEAI-GLLNEMVLKTINPNVYTYNI 274

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G+V     VL  +L++C  PD + +++L+ G      + +A  +F  +   G
Sbjct: 275 LVDALCKEGKVKEAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQHVFNAMSLMG 334

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TY+ LING C+      ALNLF+EM   N        P  VTY+++IDGLCK G
Sbjct: 335 VTPDVHTYTILINGFCKNKMVDEALNLFKEMHQKN------MVPGIVTYSSLIDGLCKSG 388

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +    +L  +M+D+    DV+TY+SLI G C     + A  L  +M DQ ++P++ TF 
Sbjct: 389 RIPYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQEIRPNIFTFT 448

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++ +A  + + ++ +G + N  T++ +++G C  G +  A  +   ME  
Sbjct: 449 ILLDGLCKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDN 508

Query: 388 GCKHTVFSY 396
           GC    F++
Sbjct: 509 GCIPNAFTF 517



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/271 (34%), Positives = 139/271 (51%), Gaps = 17/271 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC-----LAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           EA  +   ML     P  +T   L+ G      + K +H      +F  ++  G+ PD++
Sbjct: 287 EAKSVLAVMLKACVKPDVITYSTLMDGYFLVYEVKKAQH------VFNAMSLMGVTPDVH 340

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY ILIN FCK   V     +   + +    P  V ++SLI GLC   RI     L  ++
Sbjct: 341 TYTILINGFCKNKMVDEALNLFKEMHQKNMVPGIVTYSSLIDGLCKSGRIPYVWDLIDEM 400

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           +  G   +VITYS+LI+GLC+ GH   A+ LF +M +         +PN  T+T ++DGL
Sbjct: 401 RDRGQPADVITYSSLIDGLCKNGHLDRAIALFNKMKDQE------IRPNIFTFTILLDGL 454

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +  A+E+F  +  K  + +V TYN +I+G C      EA  +L +M D G  P+ 
Sbjct: 455 CKGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNA 514

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGV 354
            TF  I+  L K  + D+A +LL  MI RG+
Sbjct: 515 FTFETIIIALFKKDENDKAEKLLRQMIARGL 545



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 35/128 (27%), Positives = 64/128 (50%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F +M      P ++ +N ++  F     ++ A  L   +  +G+QPD++T N+
Sbjct: 40  VDDAVSQFNRMLCMRHTPPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLITLNI 99

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C  G++     +L  ++ RG  P+T T +TL+ G CL G+V  A      + + G
Sbjct: 100 LINCFCHMGQITFGFSVLAKILKRGYPPDTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 159

Query: 389 CKHTVFSY 396
            +    SY
Sbjct: 160 FQLNQVSY 167


>gi|357439843|ref|XP_003590199.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479247|gb|AES60450.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 834

 Score =  250 bits (638), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 129/309 (41%), Positives = 187/309 (60%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A   F+ ML MRP PPP+  F  + G L KTKHY  V+ LF+R+   G+  +  T NI
Sbjct: 31  NDAIDSFNRMLRMRP-PPPIIKFGKILGSLVKTKHYPIVIHLFQRMELHGIQSNYITLNI 89

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +C + +++  F V  +IL+  + PD + +T+LI+GLC   ++ E+     +L + G
Sbjct: 90  LINSYCHLRQINSAFSVFAKILKLGYQPDIITYTTLIRGLCLNGQVKESLNFHDRLVSQG 149

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K + ++Y TLINGLC+ G T  AL L  ++       G +C+P+ V Y TIIDGLCK+ 
Sbjct: 150 IKLDHVSYGTLINGLCKIGQTGPALRLLRKIE------GEICRPDVVMYNTIIDGLCKDK 203

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A +L+ +M +K + P+VVTY SLI+GFC     ++A  LL EM+ + V P+V TFN
Sbjct: 204 LVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGLLNEMVLKNVNPNVCTFN 263

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCK GKM EA  L+ +M+  GV P+  T++ LMDG+ L      AK +F  M  M
Sbjct: 264 TLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFLVKEAGKAKNVFNIMAQM 323

Query: 388 GCKHTVFSY 396
           G    V SY
Sbjct: 324 GVTCDVHSY 332



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 160/325 (49%), Gaps = 37/325 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K K       L+  +    +FP++ TY  LI  FC +G++   F +
Sbjct: 187 PDVVMYNTIIDGLCKDKLVRDAFDLYCEMFEKRVFPNVVTYTSLIYGFCIVGQLDKAFGL 246

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+   F +L+ GLC E ++ EA +L   +   G  P+V TY+ L++G   
Sbjct: 247 LNEMVLKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNALMDGYFL 306

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCK---------------------------------P 251
                 A N+F  MA    + GV C                                  P
Sbjct: 307 VKEAGKAKNVFNIMA----QMGVTCDVHSYSVMISGLSKMKMLDEAMDLFEGMRNENVIP 362

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y+++IDGLCK G ++ A +   +M D+   P+V+TY SLI   C ++  ++A  LL
Sbjct: 363 DVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCKSHQVDKAIALL 422

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            ++ DQG+Q ++ T+N+++D LCK+G++ +A ++ + ++++G N +  T+S +++G C  
Sbjct: 423 KKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVVTYSIMINGLCKE 482

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
              + A  L   ME  GC     +Y
Sbjct: 483 SLFDEALTLLSKMEDKGCVPDAIAY 507



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 160/300 (53%), Gaps = 13/300 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF + + M+ ++   P + +FN L   L K        SL   +   G+ PD++TYN 
Sbjct: 241 DKAFGLLNEMV-LKNVNPNVCTFNTLVDGLCKEGKMREAKSLVAVMMKEGVGPDVFTYNA 299

Query: 148 LINCFC---KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           L++ +    + G+  + F ++ ++  +C   D  +++ +I GL     + EA  LF  ++
Sbjct: 300 LMDGYFLVKEAGKAKNVFNIMAQMGVTC---DVHSYSVMISGLSKMKMLDEAMDLFEGMR 356

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
                P+V+ YS+LI+GLC++G    AL   +EM +  G+      PN +TYT++ID LC
Sbjct: 357 NENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHD-RGQ-----PPNVITYTSLIDALC 410

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K   VDKA  L  ++KD+ I  ++ TYN L+ G C      +A  +  +++ +G   DVV
Sbjct: 411 KSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGHNVDVV 470

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T++++++ LCK    DEA  LL  M  +G  P+   + T+++ F      + A++L   M
Sbjct: 471 TYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEKLLREM 530



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/246 (30%), Positives = 129/246 (52%), Gaps = 6/246 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L       K      ++F  +   G+  D+++Y+++I+   KM  +     +
Sbjct: 292 PDVFTYNALMDGYFLVKEAGKAKNVFNIMAQMGVTCDVHSYSVMISGLSKMKMLDEAMDL 351

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD VA++SLI GLC   RI  A     ++   G  PNVITY++LI+ LC+
Sbjct: 352 FEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEMHDRGQPPNVITYTSLIDALCK 411

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A+ L +++ +         + N  TY  ++DGLCK+G +  A+++F  +  K  
Sbjct: 412 SHQVDKAIALLKKIKDQG------IQANMYTYNILVDGLCKDGRLTDAQKVFQDLLMKGH 465

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N DVVTY+ +I+G C  + ++EA  LL +M D+G  PD + +  I++   +    D+A +
Sbjct: 466 NVDVVTYSIMINGLCKESLFDEALTLLSKMEDKGCVPDAIAYETIINAFFEKDMNDKAEK 525

Query: 345 LLELMI 350
           LL  MI
Sbjct: 526 LLREMI 531



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/208 (31%), Positives = 114/208 (54%), Gaps = 6/208 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S++++   L+K K  D  + LF+ + +  + PD+  Y+ LI+  CK GR++     +  +
Sbjct: 331 SYSVMISGLSKMKMLDEAMDLFEGMRNENVIPDVVAYSSLIDGLCKSGRINSALKYVDEM 390

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+ + +TSLI  LC   ++ +A AL  K+K  G + N+ TY+ L++GLC+ G  
Sbjct: 391 HDRGQPPNVITYTSLIDALCKSHQVDKAIALLKKIKDQGIQANMYTYNILVDGLCKDGRL 450

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  +F+++        VV      TY+ +I+GLCKE   D+A  L  +M+DK   PD 
Sbjct: 451 TDAQKVFQDLLMKGHNVDVV------TYSIMINGLCKESLFDEALTLLSKMEDKGCVPDA 504

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + Y ++I+ F   +  ++A  LL EM+D
Sbjct: 505 IAYETIINAFFEKDMNDKAEKLLREMID 532


>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 590

 Score =  249 bits (637), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 193/309 (62%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ +L  R + PP   FN + G L K+KHY TVL L +++   G+ P+L   NI
Sbjct: 67  DDAVSLFNRLLR-RNTTPPAFEFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 125

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC++G +   F V  +IL+  + PD + FT+L KGLC + +I +A     K+ A G
Sbjct: 126 LINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLCLKGQIQQAFLFHDKVVALG 185

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + I+Y TLI+GLC+ G T  AL+L + + +GN     + +PN V Y TIID +CK  
Sbjct: 186 FHFDQISYGTLIHGLCKVGETRAALDLLQRV-DGN-----LVQPNVVMYNTIIDSMCKVK 239

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A +LF +M  K I+PDVVTY++LI GFC      +A  L  +M+ + ++PDV TFN
Sbjct: 240 LVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFN 299

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  CK+GKM E   + ++M+ +G+ PN  T+++LMDG+CL   VN AK +F +M   
Sbjct: 300 ILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQG 359

Query: 388 GCKHTVFSY 396
           G    + SY
Sbjct: 360 GVNPDIQSY 368



 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 101/302 (33%), Positives = 173/302 (57%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF +F  M++   SP  +T   L+ G     K  D +  LF ++    + PD+YT+NI
Sbjct: 242 NEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAI-DLFNKMILENIKPDVYTFNI 300

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N FCK G++  G  V   +++    P+ V + SL+ G C    + +A ++F  +   G
Sbjct: 301 LVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGG 360

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ +YS +ING C+      A+NLF+EM   N        P+ VTY+++IDGL K G
Sbjct: 361 VNPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKN------IIPDVVTYSSLIDGLSKSG 414

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +L  QM D+ + P++ TYNS++   C  +  ++A  LL +  D+G QPD+ T++
Sbjct: 415 RISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYS 474

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  LC++GK+++A ++ E ++++G N +   ++ ++ GFC+ G  N A  L   ME  
Sbjct: 475 ILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN 534

Query: 388 GC 389
           GC
Sbjct: 535 GC 536



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   + K K  +    LF  + S G+ PD+ TY+ LI+ FC +G++     +
Sbjct: 223 PNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYSALISGFCILGKLKDAIDL 282

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     PD   F  L+   C + ++ E   +F  +   G KPN +TY++L++G C 
Sbjct: 283 FNKMILENIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCL 342

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  MA G    GV   P+  +Y+ +I+G CK    D+A  LF +M  KNI
Sbjct: 343 VKEVNKAKSIFNTMAQG----GV--NPDIQSYSIMINGFCKIKKFDEAMNLFKEMHRKNI 396

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+SLI G   +   + A  L+ +M D+GV P++ T+N I+D LCK  ++D+A  
Sbjct: 397 IPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIA 456

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL     +G  P+ ST+S L+ G C +G++  A+++F  +   G    V++Y
Sbjct: 457 LLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLVKGYNLDVYAY 508



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 158/288 (54%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+  L   L K       L L +R++   + P++  YN +I+  CK+  V+  F +   +
Sbjct: 192 SYGTLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEM 251

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +    +PD V +++LI G C   ++ +A  LF K+     KP+V T++ L+N  C+ G  
Sbjct: 252 VSKGISPDVVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAFCKDGKM 311

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                +F+ M     K G+  KPN VTY +++DG C    V+KAK +F  M    +NPD+
Sbjct: 312 KEGKTVFDMMM----KQGI--KPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDI 365

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            +Y+ +I+GFC    ++EA  L  EM  + + PDVVT++ ++D L K+G++  A +L++ 
Sbjct: 366 QSYSIMINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQ 425

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV PN  T+++++D  C T +V+ A  L    +  G +  + +Y
Sbjct: 426 MHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTY 473



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 9/270 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E   +FD M+     P  +T  +L+ G CL K    +   S+F  +   G+ PD+ +Y+I
Sbjct: 313 EGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVK--EVNKAKSIFNTMAQGGVNPDIQSYSI 370

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN FCK+ +      +   + R    PD V ++SLI GL    RI  A  L  ++   G
Sbjct: 371 MINGFCKIKKFDEAMNLFKEMHRKNIIPDVVTYSSLIDGLSKSGRISYALQLVDQMHDRG 430

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ TY+++++ LC+T     A+ L  +  +         +P+  TY+ +I GLC+ G
Sbjct: 431 VPPNICTYNSILDALCKTHQVDKAIALLTKFKDKG------FQPDISTYSILIKGLCQSG 484

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+++F  +  K  N DV  Y  +I GFC    +NEA  LL +M D G  PD  T+ 
Sbjct: 485 KLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDNGCIPDAKTYE 544

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +I+  L K  + D A +LL  MI RG+  N
Sbjct: 545 IIILSLFKKDENDMAEKLLREMIARGLPLN 574



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 70/147 (47%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K N ++Y++          VD A  LF ++  +N  P    +N ++     +  ++    
Sbjct: 47  KINFISYSSTSTTFHSNNDVDDAVSLFNRLLRRNTTPPAFEFNKILGSLVKSKHYHTVLY 106

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  +M  +G++P++V  N++++  C+ G +  A  +   ++  G  P+T TF+TL  G C
Sbjct: 107 LSQKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYVPDTITFTTLSKGLC 166

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
           L G++  A      + ++G      SY
Sbjct: 167 LKGQIQQAFLFHDKVVALGFHFDQISY 193


>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 520

 Score =  249 bits (636), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/292 (40%), Positives = 183/292 (62%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           PP+  F  + G L K KHY TV+SL K++ + G+ PDL T +ILINCFC +G+++  F V
Sbjct: 8   PPIIEFGKILGSLVKMKHYPTVISLSKQMEAKGIVPDLVTLSILINCFCHLGQMAFSFSV 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG+IL+  + P+ +   +L+KGLC +  + ++     K+ A G + + ++Y  L+NGLC+
Sbjct: 68  LGKILKLGYQPNTIILNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILLNGLCK 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T  A+ L   + + +       +P+ V Y+TIIDGLCK+  VD+A +L+ +M  + I
Sbjct: 128 IGETRCAIKLLRTIEDRS------TRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGI 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+TY +LI GFC A    EA  LL EM+ + + P++ T+N ++D LCK GK+ E+  
Sbjct: 182 FPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKN 241

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL +M  +GV P+   +S LMDG+CL G V  AK++F+ M   G    V+SY
Sbjct: 242 LLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSY 293



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  +   N L   L         L    ++ + G   D  +Y IL+
Sbjct: 64  SFSVLGKILKLGYQPNTII-LNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDQVSYGILL 122

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G       +L  I      PD V ++++I GLC +  + EA  L++++ A G  
Sbjct: 123 NGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIF 182

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VITY+TLI G C  G  + A  L  EM   N        PN  TY T+ID LCKEG V
Sbjct: 183 PDVITYTTLICGFCLAGQLMEAFGLLNEMILKN------INPNIYTYNTLIDTLCKEGKV 236

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            ++K L   M  K + PDVV Y+ L+ G+C   +  +A  + + M+  GV PDV ++N+I
Sbjct: 237 KESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNII 296

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LCK  ++DEA  LL  M+ + + P+T T+S+L+DG C  GR+    +L   M   G 
Sbjct: 297 INGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQ 356

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 357 PANLVTY 363



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R + P +  ++ +   L K K  D    L+  +N+ G+FPD+ TY  LI  FC  G++  
Sbjct: 144 RSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSEMNARGIFPDVITYTTLICGFCLAGQLME 203

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            F +L  ++     P+   + +LI  LC E ++ E+  L   +   G KP+V+ YS L++
Sbjct: 204 AFGLLNEMILKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMD 263

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G    A  +F  M     + GV   P+  +Y  II+GLCK   VD+A  L  +M 
Sbjct: 264 GYCLVGEVQKAKQIFLVMV----QTGV--NPDVYSYNIIINGLCKGKRVDEAMNLLREML 317

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            KN+ PD VTY+SLI G C          L  EM  +G   ++VT+N ++D LCKN  +D
Sbjct: 318 HKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLD 377

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  L   M  RG+ PN  T++ L+DG C  GR+   + LF  +   G    V++Y
Sbjct: 378 KAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTY 433



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 150/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+ +L   L K       + L + +      PD+  Y+ +I+  CK   V   + +   
Sbjct: 116 VSYGILLNGLCKIGETRCAIKLLRTIEDRSTRPDVVMYSTIIDGLCKDKLVDEAYDLYSE 175

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      PD + +T+LI G C   ++MEA  L  ++      PN+ TY+TLI+ LC+ G 
Sbjct: 176 MNARGIFPDVITYTTLICGFCLAGQLMEAFGLLNEMILKNINPNIYTYNTLIDTLCKEGK 235

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              + NL   M     K GV  KP+ V Y+ ++DG C  G V KAK++FL M    +NPD
Sbjct: 236 VKESKNLLAVMT----KKGV--KPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPD 289

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V +YN +I+G C     +EA  LL EM+ + + PD VT++ ++D LCK G++     L +
Sbjct: 290 VYSYNIIINGLCKGKRVDEAMNLLREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTK 349

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  RG   N  T+++L+DG C    ++ A  LF+ M+  G +   ++Y
Sbjct: 350 EMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTY 398



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 152/300 (50%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+ ++   P + ++N L   L K        +L   +   G+ PD+  Y+IL
Sbjct: 203 EAFGLLNEMI-LKNINPNIYTYNTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSIL 261

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C +G V     +   ++++   PD  ++  +I GLC   R+ EA  L  ++     
Sbjct: 262 MDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNLLREMLHKNM 321

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +TYS+LI+GLC+ G     L+L +EM +  G+       N VTY +++DGLCK   
Sbjct: 322 IPDTVTYSSLIDGLCKLGRITTILDLTKEMHH-RGQ-----PANLVTYNSLLDGLCKNQN 375

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +DKA  LF++MK++ I P+  TY +LI G C      +   L   ++ +G   DV T+ V
Sbjct: 376 LDKAIALFMKMKERGIQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGYCIDVWTYTV 435

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LCK G  DEA  +   M   G  PN  TF  ++         + A++L   M + G
Sbjct: 436 MISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEKLLHEMIAKG 495



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/252 (33%), Positives = 130/252 (51%), Gaps = 6/252 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +++L               +F  +  TG+ PD+Y+YNI+IN  CK  RV     +
Sbjct: 253 PDVVIYSILMDGYCLVGEVQKAKQIFLVMVQTGVNPDVYSYNIIINGLCKGKRVDEAMNL 312

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     PD V ++SLI GLC   RI     L  ++   G   N++TY++L++GLC+
Sbjct: 313 LREMLHKNMIPDTVTYSSLIDGLCKLGRITTILDLTKEMHHRGQPANLVTYNSLLDGLCK 372

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A+ LF +M           +PN  TYT +IDGLCK G + K + LF  +  K  
Sbjct: 373 NQNLDKAIALFMKMKERG------IQPNKYTYTALIDGLCKGGRLKKGQALFQHLLVKGY 426

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DV TY  +I G C    ++EA  +  +M D G  P+ VTF +I+  L +  + D+A +
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAMKSKMEDNGCIPNAVTFEIIIRSLLEKDENDKAEK 486

Query: 345 LLELMILRGVNP 356
           LL  MI +G+ P
Sbjct: 487 LLHEMIAKGLLP 498


>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
 gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
          Length = 555

 Score =  248 bits (634), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 130/309 (42%), Positives = 185/309 (59%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A   F++M+N  P P  +  F  LF  L + KHY TV+SL K++   G+  D+ +  I
Sbjct: 73  NDALSAFNHMVNTNPLPS-IVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC++  V +GF VLG+I++    P+ + F++LI G C E +I  A  LF  + A G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPNV +YS +I GLCR G T   + L E M        V C+P+ V Y TI+D LCK+ 
Sbjct: 192 YKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKV------VGCEPDVVIYNTIVDRLCKDR 245

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A  +F +MK   I P VVTY SLIHG      W EA  LL EM    + PD+V F+
Sbjct: 246 LVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFS 305

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D +CK G++ EA  +L+ M   GV P+ +T++TLM+G+CL   V  A+++F  M S 
Sbjct: 306 VLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISK 365

Query: 388 GCKHTVFSY 396
           G    VFS+
Sbjct: 366 GRMPDVFSF 374



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F+ L             + LF  + + G  P++++Y+I+I   C++G+ +    +
Sbjct: 159 PNVITFSTLINGFCIEGKIGRAIELFDVMVARGYKPNVHSYSIIIKGLCRVGKTTEVIKL 218

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD V + +++  LC +  + EA  +F K+K  G  P V+TY++LI+GL  
Sbjct: 219 LEHMKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRN 278

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L  EM  GN        P+ V ++ +ID +CKEG V +A+ +   M +  +
Sbjct: 279 LGRWKEAFGLLNEMKGGN------IMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGV 332

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TYN+L++G+C   +  EA  +   M+ +G  PDV +F+++++  CK  ++DEA +
Sbjct: 333 EPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQ 392

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  RG+ P+T +++TL+ G C   R   A+ELF  M S G    + +Y
Sbjct: 393 LFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTY 444



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/286 (31%), Positives = 153/286 (53%), Gaps = 6/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K +  +  + +F ++  TG+ P + TY  LI+    +GR    F +
Sbjct: 229 PDVVIYNTIVDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGL 288

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD VAF+ LI  +C E  + EA  +   +   G +P+V TY+TL+NG C 
Sbjct: 289 LNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCL 348

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  +FE M +  G+      P+  +++ +++G CK   +D+AK+LF +M  + +
Sbjct: 349 RMEVVEARKVFEVMIS-KGRM-----PDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGL 402

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD V+YN+LI G C A    EA  L  +M   G  P++VT+++++D L K G +D+A  
Sbjct: 403 IPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMG 462

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           L   M   G+ P+  T++ ++DG C  G+   A+ELF  +   G +
Sbjct: 463 LFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKGLQ 508



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            A  +FD M+  R   P + S++++   L +      V+ L + +   G  PD+  YN +
Sbjct: 179 RAIELFDVMV-ARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEHMKVVGCEPDVVIYNTI 237

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK   V+    +  ++  +   P  V +TSLI GL    R  EA  L  ++K    
Sbjct: 238 VDRLCKDRLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNI 297

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++ +S LI+ +C+ G    A  + + M     + GV  +P+  TY T+++G C    
Sbjct: 298 MPDLVAFSVLIDIMCKEGEVSEARVILKTMT----EMGV--EPDVATYNTLMNGYCLRME 351

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A+++F  M  K   PDV +++ L++G+C A   +EA  L  EM  +G+ PD V++N 
Sbjct: 352 VVEARKVFEVMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNT 411

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+  +  EA  L + M   G  PN  T+S L+D     G ++ A  LF +ME+ G
Sbjct: 412 LISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSG 471

Query: 389 CKHTVFSY 396
            K  + +Y
Sbjct: 472 LKPDLVTY 479



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 7/234 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I   M  M   P   T   L+ G   + +  +    +F+ + S G  PD+++++I
Sbjct: 318 SEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEA-RKVFEVMISKGRMPDVFSFSI 376

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK  R+     +   +      PD V++ +LI GLC   R +EA  LF  + + G
Sbjct: 377 LVNGYCKAKRIDEAKQLFDEMTHRGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNG 436

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++TYS L++ L + G+   A+ LF  M N         KP+ VTY  +IDG+CK G
Sbjct: 437 YPPNLVTYSILLDCLSKQGYLDQAMGLFRAMENSG------LKPDLVTYNIMIDGMCKYG 490

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
               A+ELF ++  K + P+       I G C     +EA+    +M      P
Sbjct: 491 KFKDARELFAELSVKGLQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSP 544



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 49/169 (28%), Positives = 77/169 (45%), Gaps = 1/169 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M + R   P   S+N L   L + +       LFK ++S G  P+L TY+I
Sbjct: 388 DEAKQLFDEMTH-RGLIPDTVSYNTLISGLCQARRPLEAEELFKDMHSNGYPPNLVTYSI 446

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++C  K G +     +   +  S   PD V +  +I G+C   +  +A  LF +L   G
Sbjct: 447 LLDCLSKQGYLDQAMGLFRAMENSGLKPDLVTYNIMIDGMCKYGKFKDARELFAELSVKG 506

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
            +PN    +  I+G+C+ G    A   F +M   +      C     TY
Sbjct: 507 LQPNNWVCTPTIDGVCKGGLLDEAHKAFRQMEKDDCSPAQGCINGRATY 555



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A   F  M + N  P +V +  L         +     L  +M   G+  DV++  +
Sbjct: 72  INDALSAFNHMVNTNPLPSIVKFGELFSALVRMKHYKTVVSLSKQMEMAGISHDVLSLTI 131

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C+   +D    +L  +I  G+ PN  TFSTL++GFC+ G++  A ELF  M + G
Sbjct: 132 LINCFCRLCHVDYGFSVLGKIIKLGLEPNVITFSTLINGFCIEGKIGRAIELFDVMVARG 191

Query: 389 CKHTVFSY 396
            K  V SY
Sbjct: 192 YKPNVHSY 199


>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
 gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Cucumis sativus]
          Length = 588

 Score =  248 bits (632), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 129/333 (38%), Positives = 185/333 (55%), Gaps = 41/333 (12%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           +I+  +A   FD M+        + SFN L   LAK +HY  V SL+K+++  GL+PDL 
Sbjct: 74  SISVTQAHQFFDLMMR------SIFSFNRLLAGLAKIEHYSQVFSLYKQMHLAGLWPDLL 127

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T NILINC C + R++ G   +  I+R  + PD V FT+LIKGLC E RI+EA  LF ++
Sbjct: 128 TLNILINCLCNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRM 187

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           +  GC PNV+TY TLI GLC  G+  +AL   +EM N    +   C+PN ++Y+ IIDGL
Sbjct: 188 QKLGCTPNVVTYGTLIKGLCALGNINIALKWHQEMLNDTSPYVFNCRPNVISYSIIIDGL 247

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVV---------------------------------- 289
           CK G  ++A  LF +M D+ + P+VV                                  
Sbjct: 248 CKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNL 307

Query: 290 -TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            TY SLI GFC   D N A  L + M  +G +PDV+++N++++  CK  K++EA +L   
Sbjct: 308 FTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNE 367

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           M+  G+ P+  T   L+    L G+V+ AKELF
Sbjct: 368 MLHVGMWPDVKTSGVLLKALFLAGKVDDAKELF 400



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 156/301 (51%), Gaps = 9/301 (2%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y+ N RP+   + S++++   L K  +++  + LF  +   G+ P++ T+++LI+  CK 
Sbjct: 229 YVFNCRPN---VISYSIIIDGLCKVGNWEEAICLFNEMVDQGVQPNVVTFSVLIDMLCKE 285

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+V     +L  +++    P+   +TSLIKG C    +  A  LF  + + G +P+VI+Y
Sbjct: 286 GQVIKAKKLLEMMIQIGIVPNLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISY 345

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           + LING C+T     A+ LF EM +      V   P+  T   ++  L   G VD AKEL
Sbjct: 346 NMLINGYCKTLKVEEAMKLFNEMLH------VGMWPDVKTSGVLLKALFLAGKVDDAKEL 399

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F  +K   +  D+      + G C      EA  L  E+    ++ D+ TF  ++D LCK
Sbjct: 400 FRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCK 459

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK++ A  L E +   G+ P+   +S+++ GFC  G+V+ A  LF  ME  GC   + +
Sbjct: 460 AGKLETAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENGCSPDLIT 519

Query: 396 Y 396
           Y
Sbjct: 520 Y 520



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 154/316 (48%), Gaps = 42/316 (13%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA C+F+ M++ +   P + +F++L   L K         L + +   G+ P+L+TY  L
Sbjct: 255 EAICLFNEMVD-QGVQPNVVTFSVLIDMLCKEGQVIKAKKLLEMMIQIGIVPNLFTYTSL 313

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FC +G ++    +   +    + PD +++  LI G C   ++ EA  LF ++   G 
Sbjct: 314 IKGFCLVGDLNSAKELFVSMPSKGYEPDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGM 373

Query: 209 KPNVITYSTLI-----------------------------------NGLCRTGHTIVALN 233
            P+V T   L+                                   +GLC+ G+   A+ 
Sbjct: 374 WPDVKTSGVLLKALFLAGKVDDAKELFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMK 433

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           LF E+ + N K  +       T+  +IDGLCK G ++ A ELF ++ ++ I PD + Y+S
Sbjct: 434 LFNELESYNMKLDIE------TFGCLIDGLCKAGKLETAWELFEKLYEEGIQPDAMAYSS 487

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +IHGFC     ++AN L  +M + G  PD++T++++M    ++ K+++  +LL  MI + 
Sbjct: 488 MIHGFCKKGQVDKANILFQKMEENGCSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKD 547

Query: 354 VNPNTSTFSTLMDGFC 369
           V P+   ++ + D  C
Sbjct: 548 VWPDDGIYAIVEDMVC 563



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 129/244 (52%), Gaps = 8/244 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N+L     KT   +  + LF  +   G++PD+ T  +L+      G+V      
Sbjct: 340 PDVISYNMLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDA-KE 398

Query: 165 LGRILRSCFTPDAVAFTSL-IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L R+++    P  +    + + GLC    I EA  LF +L+++  K ++ T+  LI+GLC
Sbjct: 399 LFRVIKPYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLC 458

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A  LFE++           +P+ + Y+++I G CK+G VDKA  LF +M++  
Sbjct: 459 KAGKLETAWELFEKLYEEG------IQPDAMAYSSMIHGFCKKGQVDKANILFQKMEENG 512

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +PD++TY+ L+ GF  +N   +   LL  M+++ V PD   + ++ D +CK+ K  E  
Sbjct: 513 CSPDLITYSILMRGFYESNKLEKVVQLLHRMIEKDVWPDDGIYAIVEDMVCKDEKYKEWL 572

Query: 344 RLLE 347
            LL+
Sbjct: 573 DLLQ 576


>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 694

 Score =  247 bits (630), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 191/309 (61%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR + P +  F  + G L K KH+ T +SL K++   G+ PDL T +I
Sbjct: 114 HDAVSQFNGMLLMR-NTPSIIEFGKILGSLVKMKHFPTAISLSKQMEVKGIEPDLVTLSI 172

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +G+++  F VLG+IL+  + P+ +  T+L+KGLC +  + ++     K+ A G
Sbjct: 173 LINCFCHLGQMAFSFSVLGKILKLGYQPNTIILTTLMKGLCLKGEVKKSLHFHDKVVAQG 232

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++Y TL+NGLC+ G T  A+ L   + + +       +P+ V Y TIIDGLCK+ 
Sbjct: 233 FQMNQVSYGTLLNGLCKIGETRCAIKLLRMIEDRS------TRPDVVMYNTIIDGLCKDK 286

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A + + +M  + I PDV+TY++LI GFC A     A  LL EM  + + PDV T+ 
Sbjct: 287 LVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYT 346

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  LL +M   GV PN  T+STLMDG+CL G V++AK++F +M   
Sbjct: 347 ILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQT 406

Query: 388 GCKHTVFSY 396
               +V SY
Sbjct: 407 EVNPSVCSY 415



 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 158/300 (52%), Gaps = 6/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R + P +  +N +   L K K  +     +  +NS G+FPD+ TY+ LI  FC  G
Sbjct: 262 MIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIFPDVITYSTLICGFCLAG 321

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  +      PD   +T LI  LC E ++ EA  L   +   G KPNV+TYS
Sbjct: 322 QLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYS 381

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TL++G C  G    A  +F  M            P+  +Y  +I+GLCK   VD+A  L 
Sbjct: 382 TLMDGYCLVGEVHNAKQIFHAMVQTE------VNPSVCSYNIMINGLCKGKSVDEAMNLL 435

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  KN+ P+ VTYNSLI G C +     A  L+ E+  +G   DV+T+  ++D LCKN
Sbjct: 436 REMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADVITYTSLLDGLCKN 495

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +D+A  L   M  RG+ PN  T++ L+DG C   R+ +A++LF  +   GC   V++Y
Sbjct: 496 QNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTY 555



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  +    L+ G   K +     L    ++ + G   +  +Y  L+
Sbjct: 186 SFSVLGKILKLGYQPNTIILTTLMKGLCLKGE-VKKSLHFHDKVVAQGFQMNQVSYGTLL 244

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G       +L  I      PD V + ++I GLC +  + EA   +T++ + G  
Sbjct: 245 NGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTEMNSRGIF 304

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VITYSTLI G C  G  + A +L  EM   N        P+  TYT +ID LCKEG +
Sbjct: 305 PDVITYSTLICGFCLAGQLMGAFSLLNEMTLKN------INPDVYTYTILIDALCKEGKL 358

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +AK L   M  + + P+VVTY++L+ G+C   + + A  +   M+   V P V ++N++
Sbjct: 359 KEAKNLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIM 418

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LCK   +DEA  LL  M+ + V PNT T+++L+DG C +GR+  A +L   +   G 
Sbjct: 419 INGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQ 478

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 479 PADVITY 485



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 150/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L K       + L + +      PD+  YN +I+  CK   V+  +     
Sbjct: 238 VSYGTLLNGLCKIGETRCAIKLLRMIEDRSTRPDVVMYNTIIDGLCKDKLVNEAYDFYTE 297

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      PD + +++LI G C   ++M A +L  ++      P+V TY+ LI+ LC+ G 
Sbjct: 298 MNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDALCKEGK 357

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A NL   M     K GV  KPN VTY+T++DG C  G V  AK++F  M    +NP 
Sbjct: 358 LKEAKNLLGVMT----KEGV--KPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPS 411

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V +YN +I+G C     +EA  LL EM+ + V P+ VT+N ++D LCK+G++  A  L++
Sbjct: 412 VCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMK 471

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  RG   +  T+++L+DG C    ++ A  LF+ M+  G +   ++Y
Sbjct: 472 ELHHRGQPADVITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTY 520



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 155/302 (51%), Gaps = 7/302 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + + M  ++   P + ++ +L   L K        +L   +   G+ P++ TY+ L+
Sbjct: 326 AFSLLNEM-TLKNINPDVYTYTILIDALCKEGKLKEAKNLLGVMTKEGVKPNVVTYSTLM 384

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +C +G V +   +   ++++   P   ++  +I GLC    + EA  L  ++      
Sbjct: 385 DGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVV 444

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN +TY++LI+GLC++G    AL+L +E+ +  G+       + +TYT+++DGLCK   +
Sbjct: 445 PNTVTYNSLIDGLCKSGRITSALDLMKELHH-RGQ-----PADVITYTSLLDGLCKNQNL 498

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           DKA  LF++MK++ I P+  TY +LI G C       A  L   ++ +G   DV T+NV+
Sbjct: 499 DKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILVKGCCIDVYTYNVM 558

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +  LCK G +DEA  +   M   G  P+  TF  ++         + A++L   M + G 
Sbjct: 559 IGGLCKEGMLDEALAMKSKMEDNGCIPDAVTFEIIIRSLFEKDENDKAEKLLHEMIAKGL 618

Query: 390 KH 391
            H
Sbjct: 619 LH 620


>gi|357499119|ref|XP_003619848.1| CCP [Medicago truncatula]
 gi|355494863|gb|AES76066.1| CCP [Medicago truncatula]
          Length = 556

 Score =  244 bits (624), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 130/370 (35%), Positives = 207/370 (55%), Gaps = 16/370 (4%)

Query: 35  KSSISKNEPSDPTTTAKLKESLRL-----TVKDRASLEQFLK--ERCKSSGQGDITAITP 87
           + S+  N P +     KL E + +     T + R +  +FL+    C       +++   
Sbjct: 6   RRSVEWNYPKN-AIFFKLGEKVVMLCIATTTRLRYAFHKFLRFFSHCPKQNAKILSSFNG 64

Query: 88  -NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
            ++A  +F++++NM+P P  +  FN + G + K KH    +SL K++   G+ P ++T +
Sbjct: 65  IDDAVTLFNHLINMQPLPS-VIQFNTIIGSVVKMKHCPVAISLLKQMVFKGVTPSIFTLS 123

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I INC+C +G +   F VLG +L+  + P+ +  T+++KGLC    + +A      + A 
Sbjct: 124 IWINCYCHLGEMGFAFSVLGIVLKRGYQPNNITLTTVMKGLCINGEVQKAMDFHDNVAAQ 183

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   + + Y TLINGLC+ G +I A  L +EM       G V KPN V Y  IID  CK+
Sbjct: 184 GMLLDEVCYGTLINGLCKIGRSIDAFQLLQEME------GQVVKPNIVIYNMIIDSFCKD 237

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
               KA++L+L++ D  I+PD++TY SLI GFC    W E   L+ EM+++ + P+V TF
Sbjct: 238 ELTCKARDLYLKIVDMGIDPDILTYTSLIRGFCRTGQWGEVKQLMCEMVNKNINPNVYTF 297

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           NV++D  C+ GKM EA  +  LM+ RG  P+  TF+TL+ G CL G V  A++LF ++  
Sbjct: 298 NVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFE 357

Query: 387 MGCKHTVFSY 396
            G    V+SY
Sbjct: 358 RGILPDVWSY 367



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 162/300 (54%), Gaps = 7/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +++M   P  LT  +L+ G   +T  +  V  L   + +  + P++YT+N+LI+ FC+ G
Sbjct: 250 IVDMGIDPDILTYTSLIRG-FCRTGQWGEVKQLMCEMVNKNINPNVYTFNVLIDAFCRKG 308

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++     +   +++    PD V F +LI G C    ++EA  LF  +   G  P+V +Y+
Sbjct: 309 KMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKLFDTVFERGILPDVWSYT 368

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI G C+      A++LF EM   N    +V       Y+++IDGLCK G +  A ELF
Sbjct: 369 ILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIV------LYSSLIDGLCKSGRISYAWELF 422

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             + +    P+V+TYN LI  FC   D +    L   M  +G+ P V+T+N++++  CK+
Sbjct: 423 STINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGLTPTVLTYNILINGYCKS 482

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++ EA  LL +M  + + P++ T+++L DG C +GR++ A ELF  M   G    V +Y
Sbjct: 483 KRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPVDVATY 542



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 6/265 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L     +         +F  +   G  PD+ T+N LI+  C  G V     +
Sbjct: 292 PNVYTFNVLIDAFCRKGKMIEAQGMFNLMVKRGQQPDIVTFNTLISGHCLHGNVLEARKL 351

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD  ++T LI G C   RI EA +LF +++      +++ YS+LI+GLC+
Sbjct: 352 FDTVFERGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCK 411

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    A  LF  + N +G       PN +TY  +ID  CK   +D   ELF  M  K +
Sbjct: 412 SGRISYAWELFSTI-NNDGP-----PPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGL 465

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P V+TYN LI+G+C +    EA  LL  M  + + PD +T+N + D LCK+G++ +A  
Sbjct: 466 TPTVLTYNILINGYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWE 525

Query: 345 LLELMILRGVNPNTSTFSTLMDGFC 369
           L ++M + G   + +T++ L+D FC
Sbjct: 526 LFKVMHVGGPPVDVATYNVLLDAFC 550



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 87/254 (34%), Positives = 126/254 (49%), Gaps = 21/254 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-------CLAKTKHYDTVLSLFKRLNSTGLFPD 141
           EA  +F+ M+  R   P + +FN L          L   K +DTV   F+R    G+ PD
Sbjct: 312 EAQGMFNLMVK-RGQQPDIVTFNTLISGHCLHGNVLEARKLFDTV---FER----GILPD 363

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           +++Y ILI  +CK  R+     +   +       D V ++SLI GLC   RI  A  LF+
Sbjct: 364 VWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSLIDGLCKSGRISYAWELFS 423

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            +   G  PNVITY+ LI+  C+     + + LF+ M  G G       P  +TY  +I+
Sbjct: 424 TINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMC-GKG-----LTPTVLTYNILIN 477

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G CK   + +A  L   M+ KN+ PD +TYNSL  G C +   ++A  L   M   G   
Sbjct: 478 GYCKSKRIREAMNLLSVMQSKNLAPDSITYNSLFDGLCKSGRISDAWELFKVMHVGGPPV 537

Query: 322 DVVTFNVIMDELCK 335
           DV T+NV++D  CK
Sbjct: 538 DVATYNVLLDAFCK 551



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 102/215 (47%), Gaps = 7/215 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD +   R   P + S+ +L     K K  D  +SLF  +    +  D+  Y+ L
Sbjct: 347 EARKLFDTVFE-RGILPDVWSYTILIIGYCKCKRIDEAVSLFNEMRCKNMVLDIVLYSSL 405

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GR+S+ + +   I      P+ + +  LI   C    I     LF  +   G 
Sbjct: 406 IDGLCKSGRISYAWELFSTINNDGPPPNVITYNILIDAFCKIQDIDMGIELFKLMCGKGL 465

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V+TY+ LING C++     A+NL   M + N        P+++TY ++ DGLCK G 
Sbjct: 466 TPTVLTYNILINGYCKSKRIREAMNLLSVMQSKN------LAPDSITYNSLFDGLCKSGR 519

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           +  A ELF  M       DV TYN L+  FC A D
Sbjct: 520 ISDAWELFKVMHVGGPPVDVATYNVLLDAFCKAQD 554


>gi|79317869|ref|NP_001031033.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75178969|sp|Q9LPX2.1|PPR39_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12775, mitochondrial; Flags: Precursor
 gi|8698724|gb|AAF78482.1|AC012187_2 Contains similarity to an unknown protein F16M19.7 gi|6598837 from
           Arabidopsis thaliana BAC F16M19 gb|AC010795 and contains
           multiple PPR PF|01535 repeats. EST gb|AI999079 comes
           from this gene [Arabidopsis thaliana]
 gi|332190806|gb|AEE28927.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 644

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 130/356 (36%), Positives = 201/356 (56%), Gaps = 45/356 (12%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           SSG   +  I  ++A  +F  M+  RP  P +  FN LF  +AKTK Y+ VL+L K++ S
Sbjct: 61  SSG---LVGIKADDAVDLFRDMIQSRP-LPTVIDFNRLFSAIAKTKQYELVLALCKQMES 116

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            G+   +YT +I+INCFC+  ++S+ F  +G+I++  + PD V F +L+ GLC E R+ E
Sbjct: 117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGL--------------------------------- 222
           A  L  ++   G KP +IT +TL+NGL                                 
Sbjct: 177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETGFQPNEVTYGPVLN 236

Query: 223 --CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             C++G T +A+ L  +M   N K       + V Y+ IIDGLCK+G +D A  LF +M+
Sbjct: 237 VMCKSGQTALAMELLRKMEERNIKL------DAVKYSIIIDGLCKDGSLDNAFNLFNEME 290

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K    D++TYN+LI GFC A  W++   LL +M+ + + P+VVTF+V++D   K GK+ 
Sbjct: 291 IKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLR 350

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA +LL+ M+ RG+ PNT T+++L+DGFC   R+  A ++   M S GC   + ++
Sbjct: 351 EADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTF 406



 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+ M   P  +T   L+ G     K  D V+ L  R+  TG  P+  TY  
Sbjct: 175 SEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVV-LIDRMVETGFQPNEVTYGP 233

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  CK G+ +    +L ++       DAV ++ +I GLC +  +  A  LF +++  G
Sbjct: 234 VLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 293

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K ++ITY+TLI G C  G       L  +M            PN VT++ +ID   KEG
Sbjct: 294 FKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRK------ISPNVVTFSVLIDSFVKEG 347

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +L  +M  + I P+ +TYNSLI GFC  N   EA  ++  M+ +G  PD++TFN
Sbjct: 348 KLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFN 407

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  CK  ++D+   L   M LRGV  NT T++TL+ GFC +G++  AK+LF  M S 
Sbjct: 408 ILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSR 467

Query: 388 GCKHTVFSY 396
             +  + SY
Sbjct: 468 RVRPDIVSY 476



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             ++++   L K    D   +LF  +   G   D+ TYN LI  FC  GR   G  +L  
Sbjct: 264 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRD 323

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +++   +P+ V F+ LI     E ++ EA  L  ++   G  PN ITY++LI+G C+   
Sbjct: 324 MIKRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENR 383

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ + + M +        C P+ +T+  +I+G CK   +D   ELF +M  + +  +
Sbjct: 384 LEEAIQMVDLMISKG------CDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIAN 437

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTYN+L+ GFC +     A  L  EM+ + V+PD+V++ +++D LC NG++++A  +  
Sbjct: 438 TVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFG 497

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +    +  +   +  ++ G C   +V+ A +LF S+   G K    +Y
Sbjct: 498 KIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAY 546



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 142/288 (49%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F++L     K         L K +   G+ P+  TYN LI+ FCK  R+  
Sbjct: 327 RKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEE 386

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  ++     PD + F  LI G C  +RI +   LF ++   G   N +TY+TL+ 
Sbjct: 387 AIQMVDLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQ 446

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++G   VA  LF+EM +         +P+ V+Y  ++DGLC  G ++KA E+F +++
Sbjct: 447 GFCQSGKLEVAKKLFQEMVSRR------VRPDIVSYKILLDGLCDNGELEKALEIFGKIE 500

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  D+  Y  +IHG C A+  ++A  L   +  +GV+ D   +N+++ ELC+   + 
Sbjct: 501 KSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLS 560

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +A  L   M   G  P+  T++ L+           A EL   M+S G
Sbjct: 561 KADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSG 608



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 158/309 (51%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F+ M  ++     + ++N L G       +D    L + +    + P++ T+++
Sbjct: 280 DNAFNLFNEM-EIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSV 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +L  +++    P+ + + SLI G C E+R+ EA  +   + + G
Sbjct: 339 LIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKG 398

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+++T++ LING C+       L LF EM+      GV+   NTVTY T++ G C+ G
Sbjct: 399 CDPDIMTFNILINGYCKANRIDDGLELFREMS----LRGVI--ANTVTYNTLVQGFCQSG 452

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AK+LF +M  + + PD+V+Y  L+ G C   +  +A  +  ++    ++ D+  + 
Sbjct: 453 KLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYM 512

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   + L+GV  +   ++ ++   C    ++ A  LF  M   
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKADILFRKMTEE 572

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 573 GHAPDELTY 581



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/254 (26%), Positives = 122/254 (48%), Gaps = 8/254 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M++ +   P + +FN+L     K    D  L LF+ ++  G+  +  TYN L
Sbjct: 386 EAIQMVDLMIS-KGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTL 444

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  FC+ G++     +   ++     PD V++  L+ GLC    + +A  +F K++    
Sbjct: 445 VQGFCQSGKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKM 504

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + ++  Y  +I+G+C       A +LF  +     K       +   Y  +I  LC++  
Sbjct: 505 ELDIGIYMIIIHGMCNASKVDDAWDLFCSLPLKGVKL------DARAYNIMISELCRKDS 558

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + KA  LF +M ++   PD +TYN LI      +D   A  L+ EM   G   DV T  +
Sbjct: 559 LSKADILFRKMTEEGHAPDELTYNILIRAHLGDDDATTAAELIEEMKSSGFPADVSTVKM 618

Query: 329 IMDELCKNGKMDEA 342
           +++ L  +G++D++
Sbjct: 619 VINML-SSGELDKS 631


>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
 gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
          Length = 688

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/312 (39%), Positives = 187/312 (59%), Gaps = 7/312 (2%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           I+ ++A   F  M  M P P  +  F    G +AK K Y TV+ L  +++  G+   +Y+
Sbjct: 72  ISVDDALASFYRMARMNPRPS-IVEFGKFLGSIAKMKQYSTVVYLCNQMDLFGVTHTVYS 130

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            NILINC C++  V     V G++ +    PD + FT+LI G+C E +I  A  L+ ++ 
Sbjct: 131 LNILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMV 190

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+VI+Y+TLINGLC +G+T +A+++F++M   NG     CKPN VTY TIID LC
Sbjct: 191 RSGHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQ-NG-----CKPNVVTYNTIIDSLC 244

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  V+ A +   +M  + I PD +TYNS++HG C     NEA  L   M   G +PDVV
Sbjct: 245 KDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVV 304

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N+I+D L K+  +++A+  L  M+ +G+ P+  T++T++ G C  G++N A  LF  M
Sbjct: 305 TYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKM 364

Query: 385 ESMGCKHTVFSY 396
           E  GCK  V +Y
Sbjct: 365 EQKGCKPDVVAY 376



 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 172/327 (52%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L   L  + + +  + +FK++   G  P++ TYN +I+  CK   V+     
Sbjct: 196 PDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVNDAMDF 255

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY--------- 215
           L  ++     PDA+ + S++ GLC   ++ EA  LF +++  GCKP+V+TY         
Sbjct: 256 LSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQNGCKPDVVTYNIIIDSLYK 315

Query: 216 --------------------------STLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                     +T+++GLC  G    A+ LF++M          C
Sbjct: 316 DRLVNDAADFLSEMVDQGIPPDVVTYTTILHGLCYLGQLNEAIRLFKKMEQKG------C 369

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KP+ V Y TIID LCK+  V+ A E   +M D+ I P+ VTY++++HGFC     +EA  
Sbjct: 370 KPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYSTILHGFCNLGQLDEATQ 429

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  EM+ + V P+ +TF++++D LC+ G + EA  + E M  +GV PN  T++ LM+G+C
Sbjct: 430 LFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYC 489

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
           L  ++N A+++F  M   GC   + SY
Sbjct: 490 LRCKMNEARKVFEIMVGKGCAPDLHSY 516



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 172/309 (55%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M       P + ++N++   L K +  +        +   G+ PD+ TY  
Sbjct: 285 NEATRLFKRM-EQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMVDQGIPPDVVTYTT 343

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  C +G+++    +  ++ +    PD VA+ ++I  LC +  + +A    +++   G
Sbjct: 344 ILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRG 403

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN +TYST+++G C  G    A  LF+EM   N        PNT+T++ ++DGLC+EG
Sbjct: 404 IPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRN------VMPNTLTFSILVDGLCQEG 457

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A+ +F  M +K + P++ TYN+L++G+C     NEA  +   M+ +G  PD+ ++N
Sbjct: 458 MVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYN 517

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  C + +MD+A  LL  M ++ + PNT T++T+M G C  GR+  A+ELF  M S 
Sbjct: 518 ILINGYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSS 577

Query: 388 GCKHTVFSY 396
           G   T+ +Y
Sbjct: 578 GMLPTLMTY 586



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/303 (28%), Positives = 159/303 (52%), Gaps = 7/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M   +   P + ++N +   L K +  +  +     +   G+ P+  TY+ 
Sbjct: 355 NEAIRLFKKM-EQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAVTYST 413

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ FC +G++     +   ++     P+ + F+ L+ GLC E  + EA  +F  +   G
Sbjct: 414 ILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSILVDGLCQEGMVSEARWVFETMTEKG 473

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN+ TY+ L+NG C       A  +FE M  G G     C P+  +Y  +I+G C   
Sbjct: 474 VEPNIYTYNALMNGYCLRCKMNEARKVFEIMV-GKG-----CAPDLHSYNILINGYCNSR 527

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKAK L  QM  K + P+ VTYN+++ G CY     +A  L  +M   G+ P ++T++
Sbjct: 528 RMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVGRLLDAQELFKKMCSSGMLPTLMTYS 587

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ LCK+G +DEA +L + M  + + P+   ++ L++G  + G++  AK LF  + + 
Sbjct: 588 ILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYTILIEGMFIGGKLEVAKGLFSKLSAD 647

Query: 388 GCK 390
           G +
Sbjct: 648 GIQ 650



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 148/307 (48%), Gaps = 9/307 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A      M++ R  PP   +++ +          D    LFK +    + P+  T++I
Sbjct: 390 NDAMEFLSEMVD-RGIPPNAVTYSTILHGFCNLGQLDEATQLFKEMVGRNVMPNTLTFSI 448

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C+ G VS    V   +      P+   + +L+ G C   ++ EA  +F  +   G
Sbjct: 449 LVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKG 508

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++ +Y+ LING C +     A  L  +M+           PNTVTY TI+ GLC  G
Sbjct: 509 CAPDLHSYNILINGYCNSRRMDKAKALLTQMSVKK------LTPNTVTYNTIMKGLCYVG 562

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A+ELF +M    + P ++TY+ L++G C     +EA  L   M ++ ++PD++ + 
Sbjct: 563 RLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDIILYT 622

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +   GK++ A  L   +   G+ P   T++ ++ G    G  + A ELF   + M
Sbjct: 623 ILIEGMFIGGKLEVAKGLFSKLSADGIQPPGRTYNVMIKGLLKEGLSDEAYELFRKWKMM 682

Query: 388 GCKHTVF 394
             KH V 
Sbjct: 683 --KHNVI 687


>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
          Length = 650

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 196/361 (54%), Gaps = 46/361 (12%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           KER +S     +  I  ++A  +F  ML  RP  P +  FN LFG LA+TK YD VL+L 
Sbjct: 59  KERLRSG----LVDIKKDDAVALFQSMLRSRP-LPTVIDFNRLFGLLARTKQYDLVLALC 113

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K++   G+  DLYT NI+INCFC+  ++   F  +G+I +  + P+ V F +L+ GLC E
Sbjct: 114 KQMELKGIAYDLYTLNIMINCFCRRRKLGFAFSAMGKIFKLGYEPNTVTFNTLLNGLCLE 173

Query: 191 SRIMEAAA-----------------------------------LFTKLKAFGCKPNVITY 215
            R+ EA                                     L  ++ A GC+PN  TY
Sbjct: 174 GRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSEAVDLIARMMANGCQPNQFTY 233

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
             ++N +C++G+T  AL+L  +M +         KP+ VTYT IID LCK+G +D A   
Sbjct: 234 GPILNRMCKSGNTASALDLLRKMEHRK------IKPHVVTYTIIIDNLCKDGRLDDALSF 287

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +M+ K I  +V TYNSLI  FC    W++   LL +M+ + + P+VVTF+ ++D L K
Sbjct: 288 FSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKITPNVVTFSALIDSLVK 347

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA  L   MI RG+ PNT T+++L+ G C   R++ A ++   M S GC   +++
Sbjct: 348 EGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWT 407

Query: 396 Y 396
           Y
Sbjct: 408 Y 408



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 155/296 (52%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++ ++   L K    D  LS F  + + G+  +++TYN LI  FC  GR   
Sbjct: 259 RKIKPHVVTYTIIIDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDD 318

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +L  ++    TP+ V F++LI  L  E ++ EA  L+ ++   G +PN ITY++LI 
Sbjct: 319 GAQLLRDMITRKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIY 378

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC       A  + + M +        C P+  TY  +I+G CK   VD    LF +M 
Sbjct: 379 GLCNDKRLDEANQMMDLMVSKG------CDPDIWTYNILINGFCKAKQVDDGMRLFRKMS 432

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + +  D VTY++LI GFC +     A  +  EM+ QGV P ++T+ +++D LC NG+++
Sbjct: 433 LRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELE 492

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  +L+ M    +  +   ++ ++ G C   +V+ A  LF S+ S G K  + SY
Sbjct: 493 EALGILDQMHKCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSY 548



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F+ L   L K         L+  + + G+ P+  TYN LI   C   R+  
Sbjct: 329 RKITPNVVTFSALIDSLVKEGKLTEAKDLYNEMITRGIEPNTITYNSLIYGLCNDKRLDE 388

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  ++     PD   +  LI G C   ++ +   LF K+   G   + +TYSTLI 
Sbjct: 389 ANQMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQ 448

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++   IVA  +F+EM +     GV   P  +TY  ++DGLC  G +++A  +  QM 
Sbjct: 449 GFCQSRKLIVAKKVFQEMVSQ----GV--HPGIMTYAILLDGLCDNGELEEALGILDQMH 502

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  D+  YN +IHG C AN  ++A  L   +  +GV+ D+ ++N+++  LCK   + 
Sbjct: 503 KCKMELDIGIYNIIIHGMCNANKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLS 562

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA  L   M   G  P+  T++TL+        +  + +L   M+  G
Sbjct: 563 EADALFRKMKEDGYEPDGCTYNTLIRAHLRGNDITTSVQLIEEMKRCG 610



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 141/280 (50%), Gaps = 11/280 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M+     P  +T  +L++G L   K  D    +   + S G  PD++TYNIL
Sbjct: 353 EAKDLYNEMITRGIEPNTITYNSLIYG-LCNDKRLDEANQMMDLMVSKGCDPDIWTYNIL 411

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN FCK  +V  G  +  ++       D V +++LI+G C   +++ A  +F ++ + G 
Sbjct: 412 INGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGFCQSRKLIVAKKVFQEMVSQGV 471

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKE 266
            P ++TY+ L++GLC  G    AL + ++M          CK   +   Y  II G+C  
Sbjct: 472 HPGIMTYAILLDGLCDNGELEEALGILDQMHK--------CKMELDIGIYNIIIHGMCNA 523

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             VD A  LF  +  K +  D+ +YN ++ G C  +  +EA+ L  +M + G +PD  T+
Sbjct: 524 NKVDDAWSLFCSLPSKGVKRDIQSYNIMLSGLCKRSSLSEADALFRKMKEDGYEPDGCTY 583

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           N ++    +   +  + +L+E M   G + + ST   +MD
Sbjct: 584 NTLIRAHLRGNDITTSVQLIEEMKRCGFSSDASTVKIVMD 623


>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
 gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 465

 Score =  243 bits (620), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 191/309 (61%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ +L   P+PP +  FN + G L K+KHY TVL L K++   G+ P+L   NI
Sbjct: 69  DDAVSLFNCLLRQNPTPPAI-EFNKILGSLVKSKHYHTVLYLSKKMEFRGIKPNLVNCNI 127

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC++G +   F V  +IL+  + P+ + FT+LIKGLC + +I +A     KL A G
Sbjct: 128 LINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLCLKGQIHQALNFHDKLVALG 187

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N I+Y TLI+GLC+ G T  AL+L   +       G + +PN V Y+TIIDG+CK+ 
Sbjct: 188 FQFNQISYGTLIDGLCKVGETRAALDLLRRVD------GKLVQPNVVMYSTIIDGMCKDK 241

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A +L+ +M  K I+P+VVTY++LI GF       +A  L  +M+ + ++PDV TFN
Sbjct: 242 HVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFN 301

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  CK+GK+  A +L++ M  RG  PN  T+S+++D  C T RV+ A  L   ++  
Sbjct: 302 ILVDVFCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQ 361

Query: 388 GCKHTVFSY 396
           G +  + +Y
Sbjct: 362 GIRPNMHTY 370



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 66/137 (48%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP + +++ +   L KT   D  ++L  +L   G+ P+++TY ILI+  C  G++  
Sbjct: 326 RGQPPNIVTYSSILDALCKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDGLCTSGKLED 385

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +L   +    V +  +  G C +    EA+AL +K++  GC P+  TY  +  
Sbjct: 386 ARNIFEDLLVKGYDITVVTYIVMFYGFCKKGLFDEASALLSKMEENGCIPDAKTYELIKL 445

Query: 221 GLCRTGHTIVALNLFEE 237
            L + G   +A  L  E
Sbjct: 446 SLFKKGENDMAEKLHRE 462



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/147 (25%), Positives = 73/147 (49%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K N + Y++          VD A  LF  +  +N  P  + +N ++     +  ++    
Sbjct: 49  KINLIPYSSTSTTFHSNNDVDDAVSLFNCLLRQNPTPPAIEFNKILGSLVKSKHYHTVLY 108

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  +M  +G++P++V  N++++  C+ G +  A  +   ++  G NPNT TF+TL+ G C
Sbjct: 109 LSKKMEFRGIKPNLVNCNILINCFCQLGLIPFAFSVFAKILKMGYNPNTITFTTLIKGLC 168

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
           L G+++ A      + ++G +    SY
Sbjct: 169 LKGQIHQALNFHDKLVALGFQFNQISY 195


>gi|357458533|ref|XP_003599547.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488595|gb|AES69798.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 636

 Score =  243 bits (619), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 129/330 (39%), Positives = 188/330 (56%), Gaps = 9/330 (2%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK--HYDTV 126
           FL  R  S  Q   + I  +     F+++L  +P+   +  FN + G L K+   HY T 
Sbjct: 29  FLITRLYSQFQFVPSNIDVDNVVSSFNHLLRTKPTSS-IIEFNKILGSLVKSNNNHYPTA 87

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           +SL +RL   G+ PD++T+NILINC+C M  ++  F ++ +IL+  + PD + F +LIKG
Sbjct: 88  ISLSRRLEFHGITPDIFTFNILINCYCHMAEMNFAFSMMAKILKMGYEPDTITFNTLIKG 147

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC   ++ EA      + A G   +  +Y TLINGLC+ G T  AL +  ++       G
Sbjct: 148 LCLNGKVKEALHFHDHVLALGFHLDQFSYGTLINGLCKIGETRTALQMLRKID------G 201

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
            + K N V Y TIID LCK   V  A EL+ QM  K I+PDVVT+++LI+GFC      E
Sbjct: 202 KLVKINVVMYNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEE 261

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM+ + + PD  TFN+++D LCK G +  A  +L +M+  GV PN  T+S+LMD
Sbjct: 262 AFGLFREMVLKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMD 321

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+CL  +VN AK +  ++  MG      SY
Sbjct: 322 GYCLVNQVNKAKHVLNTISQMGAAPNAHSY 351



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 164/301 (54%), Gaps = 9/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A+ ++  M+  + SP  +T   L++G C+      +    LF+ +    + PD YT+NI
Sbjct: 226 DAYELYSQMIAKKISPDVVTFSALIYGFCI--VGQLEEAFGLFREMVLKNINPDYYTFNI 283

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G +     +L  +++    P+ V ++SL+ G C  +++ +A  +   +   G
Sbjct: 284 LVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQVNKAKHVLNTISQMG 343

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN  +Y T+ING C+      AL+LF +M     +F  +  P+ VTY ++IDGLCK G
Sbjct: 344 AAPNAHSYCTMINGFCKIKMVDEALSLFNDM-----QFKGIA-PDKVTYNSLIDGLCKSG 397

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A EL  +M D     ++ TYN LI   C  +  ++A  L+ ++ DQG+QPD+ TFN
Sbjct: 398 RISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKIKDQGIQPDMYTFN 457

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  LCK G++  A  + + ++ +G + N  T++ +++G C  G  + A+ L   M+  
Sbjct: 458 ILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNIMVNGLCKEGLFDEAEALLSKMDDN 517

Query: 388 G 388
           G
Sbjct: 518 G 518



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 151/287 (52%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K K       L+ ++ +  + PD+ T++ LI  FC +G++   F +   ++
Sbjct: 211 YNTIIDSLCKHKLVIDAYELYSQMIAKKISPDVVTFSALIYGFCIVGQLEEAFGLFREMV 270

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   F  L+  LC E  +  A  +   +   G  PNV+TYS+L++G C      
Sbjct: 271 LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSLMDGYCLVNQ-- 328

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
             +N  + + N   + G    PN  +Y T+I+G CK   VD+A  LF  M+ K I PD V
Sbjct: 329 --VNKAKHVLNTISQMGAA--PNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGIAPDKV 384

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI G C +   + A  L+ EM D G   ++ T+N ++D LCKN  +D+A  L++ +
Sbjct: 385 TYNSLIDGLCKSGRISYAWELVDEMHDNGQPANIFTYNCLIDALCKNHHVDQAIALVKKI 444

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +G+ P+  TF+ L+ G C  GR+ +A+++F  + S G     ++Y
Sbjct: 445 KDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTY 491



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 156/296 (52%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F  M+ ++   P   +FN+L   L K  +     ++   +   G+ P++ TY+ L
Sbjct: 261 EAFGLFREMV-LKNINPDYYTFNILVDALCKEGNLKGAKNMLVVMMKEGVMPNVVTYSSL 319

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C + +V+    VL  I +    P+A ++ ++I G C    + EA +LF  ++  G 
Sbjct: 320 MDGYCLVNQVNKAKHVLNTISQMGAAPNAHSYCTMINGFCKIKMVDEALSLFNDMQFKGI 379

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +TY++LI+GLC++G    A  L +EM + NG+       N  TY  +ID LCK   
Sbjct: 380 APDKVTYNSLIDGLCKSGRISYAWELVDEMHD-NGQ-----PANIFTYNCLIDALCKNHH 433

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A  L  ++KD+ I PD+ T+N LI+G C       A  +  +++ +G   +  T+N+
Sbjct: 434 VDQAIALVKKIKDQGIQPDMYTFNILIYGLCKVGRLKNAQDVFQDLLSKGYSVNAWTYNI 493

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +++ LCK G  DEA  LL  M   G+ P+  T+ TL+           A++L   M
Sbjct: 494 MVNGLCKEGLFDEAEALLSKMDDNGIIPDAVTYETLIQALFHKDENEKAEKLLREM 549


>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 612

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 122/303 (40%), Positives = 181/303 (59%), Gaps = 7/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+ +LN+ P+PP +  F  + G L K   Y T +SL + +   G+  DL T+NILINCF 
Sbjct: 44  FNRILNINPTPP-IFEFGKILGSLVKINCYQTAISLHREMEFNGIASDLVTFNILINCFS 102

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           ++G     F V   IL+  + P+A+  T+LIKGLC + +I +A     K+ A G   N +
Sbjct: 103 QLGHTHFSFSVFANILKKGYEPNAITLTTLIKGLCLKGQIHQALHFHDKVVALGFHLNKV 162

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y TLINGLC+ G T  AL L   +       G + +PN V Y TIID +CK   V++A 
Sbjct: 163 CYGTLINGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 216

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L+ +M  K I+PDVVTY++LI GFC     N+A  L  +M+ + + PDV TF++++D  
Sbjct: 217 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGF 276

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK G++ EA  +L +M+ +G+ P+  T+ +LMDG+CL  +VN AK +F +M   G    V
Sbjct: 277 CKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANV 336

Query: 394 FSY 396
            SY
Sbjct: 337 QSY 339



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 103/302 (34%), Positives = 170/302 (56%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF ++  M++   SP  +T   L+ G     K  D +  LF ++ S  + PD+YT++I
Sbjct: 213 NEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAI-GLFNKMISEEINPDVYTFSI 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK GRV     VL  +++    PD V + SL+ G C   ++ +A ++F  +   G
Sbjct: 272 LVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGG 331

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              NV +Y+ +ING C+      A+NLF+EM   N        P+ VTY ++IDGLCK G
Sbjct: 332 VTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCKN------IIPDVVTYNSLIDGLCKSG 385

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +L  +M D+ +  D +TYNS++   C  +  ++A  LL +M D+G+QPD+ T+ 
Sbjct: 386 KISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYT 445

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++ +A  + E ++++G N    T++ ++ GFC     + A  L   ME  
Sbjct: 446 ILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDN 505

Query: 388 GC 389
           GC
Sbjct: 506 GC 507



 Score =  194 bits (493), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   + K K  +    L+  + S G+ PD+ TY+ LI+ FC +G+++    +
Sbjct: 194 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDAIGL 253

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     PD   F+ L+ G C E R+ EA  +   +   G KP+V+TY +L++G C 
Sbjct: 254 FNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVLAMMMKQGIKPDVVTYCSLMDGYCL 313

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  MA G    GV    N  +Y  +I+G CK   VD+A  LF +M  KNI
Sbjct: 314 VKQVNKAKSIFNTMAQG----GVTA--NVQSYNIMINGFCKIKKVDEAMNLFKEMHCKNI 367

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYNSLI G C +   + A  L+ EM D+GV  D +T+N I+D LCKN ++D+A  
Sbjct: 368 IPDVVTYNSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 427

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M   G+ P+  T++ L+DG C  GR+  A+ +F  +   G   TV++Y
Sbjct: 428 LLTKMKDEGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTY 479



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 66/146 (45%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P    ++N +   L K    D  ++L  ++   G+ PD+YTY ILI+  CK GR+  
Sbjct: 400 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYTYTILIDGLCKGGRLKD 459

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +L   +      +T +I+G C      +A AL +K++  GC PN  TY  +I 
Sbjct: 460 AQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALALLSKMEDNGCIPNAKTYEIIIL 519

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFG 246
            L       +A  L  EM      FG
Sbjct: 520 SLFEKDENDMAEKLLREMIARGLLFG 545


>gi|357498921|ref|XP_003619749.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494764|gb|AES75967.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 680

 Score =  241 bits (614), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 118/308 (38%), Positives = 184/308 (59%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ +L   P+PP +  F  + G L K+KHY TVLSLF+++   G+ P+   +NIL
Sbjct: 53  DAVSLFNCLLRQNPTPPDM-EFGQILGSLVKSKHYHTVLSLFQKMEYRGIKPNFVNFNIL 111

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCFC++G +   F VL +IL+  + PD +   + IKG C + +I +A     KL A G 
Sbjct: 112 INCFCQLGLIPFAFSVLAKILKMGYEPDTITLNTFIKGFCLKGQIHQALNFHDKLVALGF 171

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + ++Y TLINGLC+ G T  AL L   +       G + + + V Y+TIID +CK+  
Sbjct: 172 HLDQVSYGTLINGLCKVGETRAALELLRRVD------GKLVQLDVVMYSTIIDSMCKDKN 225

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A +L+ +M  + I+ ++VTY++LI GFC      +A  L  +M  + + PDV TFN+
Sbjct: 226 VNDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAIGLFNKMTSENINPDVYTFNI 285

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK G++ EA   L +M+ +G+ P+  T+++LMDG+CL   VN AK +  +M   G
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 389 CKHTVFSY 396
              TV SY
Sbjct: 346 VTATVRSY 353



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 170/309 (55%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M++ R S   +T   L+ G     K  D +  LF ++ S  + PD+YT+NI
Sbjct: 227 NDAFDLYSEMVSRRISSNIVTYSALISGFCIVGKLKDAI-GLFNKMTSENINPDVYTFNI 285

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK GRV      L  +++    PD V + SL+ G C  + +  A ++   +   G
Sbjct: 286 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDIVTYNSLMDGYCLVNEVNMAKSILNTMSHRG 345

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
               V +Y+ +ING C+      A+ LF+EM +          PN +TY ++IDGLCK G
Sbjct: 346 VTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQ------IFPNVITYNSLIDGLCKSG 399

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A EL   M D+   PD++TY+S++   C  +  ++A  LLI++ DQG++P++ T+ 
Sbjct: 400 RISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYT 459

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++++A  + E ++++G N   +T++ ++ GFC  G  + A  L   M+  
Sbjct: 460 ILIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDN 519

Query: 388 GCKHTVFSY 396
            C     +Y
Sbjct: 520 SCIPDAITY 528



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 143/338 (42%), Gaps = 74/338 (21%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R     + S+N++     K K  D  + LFK ++   +FP++ TYN LI+  CK GR
Sbjct: 341 MSHRGVTATVRSYNIVINGFCKIKMVDQAMKLFKEMHHKQIFPNVITYNSLIDGLCKSGR 400

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +S+   ++  +      PD + ++S++  LC    + +A AL  KLK  G +PN+ TY+ 
Sbjct: 401 ISYALELIDLMHDRGQQPDIITYSSILDALCKNHLVDKAIALLIKLKDQGIRPNMYTYTI 460

Query: 218 LINGLCRTGHTIVALNLFEE---------------MANGNGKFGVV-------------- 248
           LI+GLC+ G    A N+FE+               M  G    G+               
Sbjct: 461 LIDGLCKGGRLEDARNIFEDLLVKGYNLTVNTYTVMIQGFCSHGLFDEALSLLSKMKDNS 520

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA------N 302
           C P+ +TY  II  L  +   DKA++L  +M  + +    + Y S    F  A      N
Sbjct: 521 CIPDAITYEIIICSLFDKDENDKAEKLLREMITRGLLYSFLEYGSWSLSFMAAPAHFLNN 580

Query: 303 D------------WNE-------ANCLLIE--MMD------------------QGVQPDV 323
           D            W +        +C+L +  M D                  QG   DV
Sbjct: 581 DSLQCTSSQESGNWAKLLLERIYCDCVLTKSNMRDKDVECPSVIIYSTCDWSKQGYILDV 640

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            T+ V++   C +G  DE+  LL  M + G  P+  T+
Sbjct: 641 NTYTVMIQGFCSHGLFDESLALLSKMEVNGCIPDAVTY 678


>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 529

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 7/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ML +R +PP +  FN + G LAK K Y T +SL K++   G+  +  T NILINCFC +G
Sbjct: 1   MLLVRHTPP-IIEFNKILGSLAKMKQYLTAISLSKQMEVKGIRANFVTLNILINCFCHLG 59

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +++  F VLG+IL+  + PD +   +L+KGLC +  + ++     K+ A G + + ++Y 
Sbjct: 60  QMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKKSLHFHDKVVAQGFQMDHVSYG 119

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TL+NGLC+ G T  A+ L   + + +       +PN V Y TIIDGLCK+  V++A +L+
Sbjct: 120 TLLNGLCKIGETRCAVKLLRMIEDRS------TRPNVVMYNTIIDGLCKDKLVNEAYDLY 173

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  + I PD +TY +LI+GFC       A  LL EM+ + + P V  +N++++ LCK 
Sbjct: 174 SEMDARGIFPDAITYTTLIYGFCLLGQLMGAFSLLDEMILKNINPGVYIYNILINALCKE 233

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G + EA  LL +M   G+ P   T+STLMDG+CL G V +AK++F +M  MG    V+SY
Sbjct: 234 GNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSY 293



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R + P +  +N +   L K K  +    L+  +++ G+FPD  TY  LI  FC +G
Sbjct: 140 MIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGFCLLG 199

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  ++     P    +  LI  LC E  + EA  L   +   G KP V+TYS
Sbjct: 200 QLMGAFSLLDEMILKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYS 259

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TL++G C  G    A  +F  M     + GV   PN  +Y  +I+GLCK   VD+A  L 
Sbjct: 260 TLMDGYCLVGEVQNAKQIFHAMV----QMGV--NPNVYSYNIMINGLCKCKRVDEAMNLL 313

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  KN+ PD VTYNSLI G C +     A  L+ EM  +G   DVVT+  ++D LCKN
Sbjct: 314 REMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKN 373

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +D+A+ L   M  RG+ P   T++ L+DG C  GR+ +A+ELF  +   GC   V++Y
Sbjct: 374 QNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTY 433



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 95/303 (31%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA+ ++  M      P  +T   L++G CL          SL   +    + P +Y YN
Sbjct: 167 NEAYDLYSEMDARGIFPDAITYTTLIYGFCL--LGQLMGAFSLLDEMILKNINPGVYIYN 224

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILIN  CK G V     +L  + +    P  V +++L+ G C    +  A  +F  +   
Sbjct: 225 ILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQM 284

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNV +Y+ +INGLC+      A+NL  EM + N        P+TVTY ++IDGLCK 
Sbjct: 285 GVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKN------MVPDTVTYNSLIDGLCKS 338

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A  L  +M  +    DVVTY SL+   C   + ++A  L ++M ++G+QP + T+
Sbjct: 339 GRITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTY 398

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D LCK G++  A  L + ++++G   +  T++ ++ G C  G  + A  +   ME 
Sbjct: 399 TALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMED 458

Query: 387 MGC 389
            GC
Sbjct: 459 NGC 461



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 152/299 (50%), Gaps = 7/299 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + D M+ ++   P +  +N+L   L K  +     +L   +   G+ P + TY+ L+
Sbjct: 204 AFSLLDEMI-LKNINPGVYIYNILINALCKEGNVKEAKNLLAVMTKEGIKPGVVTYSTLM 262

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +C +G V +   +   +++    P+  ++  +I GLC   R+ EA  L  ++      
Sbjct: 263 DGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMV 322

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ +TY++LI+GLC++G    ALNL  EM +  G+       + VTYT+++D LCK   +
Sbjct: 323 PDTVTYNSLIDGLCKSGRITSALNLMNEMHH-RGQ-----PADVVTYTSLLDALCKNQNL 376

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           DKA  LF++MK++ I P + TY +LI G C       A  L   ++ +G   DV T+ V+
Sbjct: 377 DKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTYTVM 436

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  LCK G  DEA  +   M   G  PN  TF  ++         + A++L   M + G
Sbjct: 437 ISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHEMIAKG 495



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/250 (33%), Positives = 129/250 (51%), Gaps = 6/250 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L               +F  +   G+ P++Y+YNI+IN  CK  RV     +
Sbjct: 253 PGVVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNL 312

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     PD V + SLI GLC   RI  A  L  ++   G   +V+TY++L++ LC+
Sbjct: 313 LREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCK 372

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  LF +M     + G+  +P   TYT +IDGLCK G +  A+ELF  +  K  
Sbjct: 373 NQNLDKATALFMKMK----ERGI--QPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGC 426

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DV TY  +I G C    ++EA  +  +M D G  P+ VTF +I+  L +  + D+A +
Sbjct: 427 CIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEK 486

Query: 345 LLELMILRGV 354
           LL  MI +G+
Sbjct: 487 LLHEMIAKGL 496


>gi|356529489|ref|XP_003533323.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 550

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 124/341 (36%), Positives = 191/341 (56%), Gaps = 7/341 (2%)

Query: 56  LRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG 115
           LR  +   +   +F  +  K + +        ++A  +F  ++ M P P  +  FN++ G
Sbjct: 28  LRYAISKFSVFLRFFSDSQKQNAKKKSGFDAIDDAVALFTRLITMHPLPS-VVEFNMILG 86

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
            + K KHY T +SL K++   G+ P + T +ILINC+C +G +   F VLG +L+  +  
Sbjct: 87  SIVKMKHYPTAISLSKQMGLRGITPSIVTLSILINCYCHLGHMGFAFSVLGMVLKRGYQL 146

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           +A+  T+++KGLC    + +A      + A G   + +TY TLINGLC+ G T  A  L 
Sbjct: 147 NAITLTTIMKGLCINGEVRKALEFHDSVVAQGFLLDEVTYGTLINGLCKIGLTREAFELL 206

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            +M       G V +PN V Y  I+DGLCK+G V +A++L+  +  + I+PDV TY  LI
Sbjct: 207 HKME------GQVVRPNVVIYNMIVDGLCKDGLVTEARDLYSDVVGRGIDPDVFTYTCLI 260

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           HGFC    W E   LL +M+D+ V  +V T+N+++D LCK G + +A  +  LMI RG  
Sbjct: 261 HGFCGLGQWREVTRLLCDMVDRNVNLNVYTYNILIDALCKKGMLGKAHDMRNLMIERGQR 320

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P+  TF+TLM G+CL   V  A++LF +    G    V+SY
Sbjct: 321 PDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSY 361



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 143/256 (55%), Gaps = 6/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++YTYNILI+  CK G +     +   ++     PD V F +L+ G C  + ++EA  LF
Sbjct: 287 NVYTYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLF 346

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
                 G  P+V +Y+ LI G C+      AL+LF +M            PN VTY+++I
Sbjct: 347 DTFAECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKK------LAPNIVTYSSLI 400

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DGLCK G +  A ELF  + D   +P+V+TYN ++   C     ++A  L   M ++G+ 
Sbjct: 401 DGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLDALCKIQLVDKAIELFNLMFERGLT 460

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+V ++N++++  CK+ ++DEA  L E M  R + P++ T++ L+DG C +GR++HA EL
Sbjct: 461 PNVSSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWEL 520

Query: 381 FVSMESMGCKHTVFSY 396
           F  M   G    V +Y
Sbjct: 521 FNVMHDGGPPVDVITY 536



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/260 (34%), Positives = 136/260 (52%), Gaps = 6/260 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N+L   L K         +   +   G  PDL T+N L++ +C    V     +    
Sbjct: 290 TYNILIDALCKKGMLGKAHDMRNLMIERGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTF 349

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                TPD  ++  LI G C  +RI EA +LF K+      PN++TYS+LI+GLC++G  
Sbjct: 350 AECGITPDVWSYNILIIGYCKNNRIDEALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRI 409

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  LF  + +G         PN +TY  ++D LCK   VDKA ELF  M ++ + P+V
Sbjct: 410 SYAWELFSAIHDGGPS------PNVITYNIMLDALCKIQLVDKAIELFNLMFERGLTPNV 463

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            +YN LI+G+C +   +EA  L  EM  + + PD VT+N ++D LCK+G++  A  L  +
Sbjct: 464 SSYNILINGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNV 523

Query: 349 MILRGVNPNTSTFSTLMDGF 368
           M   G   +  T++ L D F
Sbjct: 524 MHDGGPPVDVITYNILFDAF 543



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 115/235 (48%), Gaps = 6/235 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P L +FN L               LF      G+ PD+++YNILI  +CK  R+  
Sbjct: 317 RGQRPDLVTFNTLMSGYCLYNDVVEARKLFDTFAECGITPDVWSYNILIIGYCKNNRIDE 376

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  ++      P+ V ++SLI GLC   RI  A  LF+ +   G  PNVITY+ +++
Sbjct: 377 ALSLFNKMNYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNIMLD 436

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+      A+ LF  M      F     PN  +Y  +I+G CK   +D+A  LF +M 
Sbjct: 437 ALCKIQLVDKAIELFNLM------FERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMH 490

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
            +N+ PD VTYN LI G C +   + A  L   M D G   DV+T+N++ D   K
Sbjct: 491 RRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDVITYNILFDAFSK 545



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 7/178 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M N +   P + +++ L   L K+        LF  ++  G  P++ TYNI
Sbjct: 375 DEALSLFNKM-NYKKLAPNIVTYSSLIDGLCKSGRISYAWELFSAIHDGGPSPNVITYNI 433

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  CK+  V     +   +     TP+  ++  LI G C   RI EA  LF ++    
Sbjct: 434 MLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILINGYCKSKRIDEAMNLFEEMHRRN 493

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
             P+ +TY+ LI+GLC++G    A  LF  M +G     V      +TY  + D   K
Sbjct: 494 LVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPPVDV------ITYNILFDAFSK 545



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ +F  + +  PSP  +T +N++   L K +  D  + LF  +   GL P++ +YNILI
Sbjct: 412 AWELFSAIHDGGPSPNVIT-YNIMLDALCKIQLVDKAIELFNLMFERGLTPNVSSYNILI 470

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +CK  R+     +   + R    PD+V +  LI GLC   RI  A  LF  +   G  
Sbjct: 471 NGYCKSKRIDEAMNLFEEMHRRNLVPDSVTYNCLIDGLCKSGRISHAWELFNVMHDGGPP 530

Query: 210 PNVITYSTLINGLCRTGHTI 229
            +VITY+ L +   +  H I
Sbjct: 531 VDVITYNILFDAFSKIQHVI 550


>gi|356529499|ref|XP_003533328.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  240 bits (612), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 132/316 (41%), Positives = 188/316 (59%), Gaps = 15/316 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN +    AK KHY TV SL  RL   G+ PDL+T NI
Sbjct: 41  DDAVSQFNRMLCMRHTPP-IIQFNKILDSFAKMKHYSTV-SLSHRLELKGIQPDLFTLNI 98

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG+++ GF VL +IL+  + P  V   +LIKGLC + ++ +A     KL A G
Sbjct: 99  LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 158

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N + Y TLING+C+ G T  A+ L +++       G + KP+ V Y+TIID LCK  
Sbjct: 159 FQLNQVGYGTLINGVCKIGDTRAAIKLLKKID------GRLTKPDVVMYSTIIDALCKYQ 212

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ DVVTYN+LI+GFC      EA  LL  M+ + + PDV T+ 
Sbjct: 213 LVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGKLKEAIGLLNVMVLKTINPDVYTYT 272

Query: 328 VIMDELCKNGKMDEASR-------LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           +++D LCK GK+ EA R       L++ M  RG   +  T+S+L+DG C  G ++ A  L
Sbjct: 273 ILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPADVITYSSLIDGLCKNGHLDRAIAL 332

Query: 381 FVSMESMGCKHTVFSY 396
           F  M+  G +  +F++
Sbjct: 333 FNKMKDQGIRPNMFTF 348



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 13/264 (4%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R + P +  ++ +   L K +       LF  +   G+  D+ TYN LI  FC +G+
Sbjct: 189 IDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYGFCIVGK 248

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA-------LFTKLKAFGCKP 210
           +     +L  ++     PD   +T L+  LC E ++ EA         L  +++  G   
Sbjct: 249 LKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMRDRGQPA 308

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +VITYS+LI+GLC+ GH   A+ LF +M +         +PN  T+T ++DGL K G + 
Sbjct: 309 DVITYSSLIDGLCKNGHLDRAIALFNKMKDQG------IRPNMFTFTILLDGLWKGGRLK 362

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
            A+E+F  +  K  + +V TYN +I+G C      EA  +L +M D G  P+  TF  I+
Sbjct: 363 DAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAFTFETII 422

Query: 331 DELCKNGKMDEASRLLELMILRGV 354
             L K  + D+A +LL  MI RG+
Sbjct: 423 IALFKKDENDKAEKLLRQMIARGL 446



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 135/269 (50%), Gaps = 13/269 (4%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           + L K+++     PD+  Y+ +I+  CK   VS  + +   +     + D V + +LI G
Sbjct: 183 IKLLKKIDGRLTKPDVVMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYNTLIYG 242

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA-------LNLFEEMA 239
            C   ++ EA  L   +      P+V TY+ L++ LC+ G    A        +L +EM 
Sbjct: 243 FCIVGKLKEAIGLLNVMVLKTINPDVYTYTILVDALCKEGKVKEAKRRISYVWDLIDEMR 302

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           +  G+       + +TY+++IDGLCK G +D+A  LF +MKD+ I P++ T+  L+ G  
Sbjct: 303 D-RGQ-----PADVITYSSLIDGLCKNGHLDRAIALFNKMKDQGIRPNMFTFTILLDGLW 356

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 +A  +  +++ +G   +V T+NV+++  CK G ++EA  +L  M   G  PN  
Sbjct: 357 KGGRLKDAQEVFQDLLTKGYHLNVYTYNVMINGHCKQGLLEEALTMLSKMEDNGCIPNAF 416

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           TF T++         + A++L   M + G
Sbjct: 417 TFETIIIALFKKDENDKAEKLLRQMIARG 445


>gi|356524676|ref|XP_003530954.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g12700, mitochondrial-like
           [Glycine max]
          Length = 555

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 178/311 (57%), Gaps = 7/311 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++    F+ ML   P PPP+  F+ L G + +  HY T +SLF +L+S G+ P + T 
Sbjct: 35  TVDDTLLSFNRMLRKHP-PPPIFVFDKLLGAIVRMGHYPTAISLFSQLHSKGITPSIATL 93

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            ILINC+C    +S  F +LG IL+  F P+ V F +LI G C    + +A A    L A
Sbjct: 94  TILINCYCHQAHLSFAFSLLGTILKMGFQPNMVTFNTLINGFCINGMVSKAMAFRLDLMA 153

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   +  +Y +LINGLC+ G T  AL L ++M         + +PN +TY+T+IDGLCK
Sbjct: 154 KGYPLDEFSYGSLINGLCKNGQTRDALQLLQKMEED------LVRPNLITYSTVIDGLCK 207

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  +  A  LF  +  + I  DVV YNSLIHG C    W EA  LL  M+   + PD  T
Sbjct: 208 DRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRLLTMMVRGNINPDDYT 267

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN+++D LCK G++ EA  +  +M+ RG  P+  T++ LM+GFCL+  V+ A+ELF  M 
Sbjct: 268 FNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMV 327

Query: 386 SMGCKHTVFSY 396
             G +  V +Y
Sbjct: 328 KRGLEPDVLNY 338



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 153/292 (52%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ +   L K +     L LF  + S G+  D+  YN LI+  C +G+      +
Sbjct: 193 PNLITYSTVIDGLCKDRLIADALRLFSLVTSRGILVDVVAYNSLIHGCCSVGQWREATRL 252

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R    PD   F  L+  LC E RI+EA  +F  +   G KP+++TY+ L+ G C 
Sbjct: 253 LTMMVRGNINPDDYTFNILVDALCKEGRIVEAQGVFAVMMKRGEKPDIVTYNALMEGFCL 312

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           + +   A  LF  M     K G+  +P+ + Y  +I+G CK   VD+A  LF +++ KN+
Sbjct: 313 SNNVSEARELFNRMV----KRGL--EPDVLNYNVLINGYCKIDMVDEAMVLFKEIRCKNL 366

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ TYNSLI G C     +    L+ EM D+G  PD+VT+N+ +D  CK+   ++A  
Sbjct: 367 VPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDIVTYNIFLDAFCKSKPYEKAIS 426

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L    I++G+ P+   +  +++ FC   ++  A+E    +   GC   V +Y
Sbjct: 427 LFR-QIVQGIWPDFYMYDVIVENFCKGEKLKIAEEALQHLLIHGCCPNVRTY 477



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 151/281 (53%), Gaps = 12/281 (4%)

Query: 111 NLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +L+ GC  + + +    +L++  R N   + PD YT+NIL++  CK GR+     V   +
Sbjct: 235 SLIHGCCSVGQWREATRLLTMMVRGN---INPDDYTFNILVDALCKEGRIVEAQGVFAVM 291

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++    PD V + +L++G C  + + EA  LF ++   G +P+V+ Y+ LING C+    
Sbjct: 292 MKRGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVLINGYCKIDMV 351

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ LF+E+   N        PN  TY ++IDGLCK G +   +EL  +M D+  +PD+
Sbjct: 352 DEAMVLFKEIRCKN------LVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQSPDI 405

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN  +  FC +  + +A  L  +++ QG+ PD   ++VI++  CK  K+  A   L+ 
Sbjct: 406 VTYNIFLDAFCKSKPYEKAISLFRQIV-QGIWPDFYMYDVIVENFCKGEKLKIAEEALQH 464

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +++ G  PN  T++ +++  C     + A  L   M+   C
Sbjct: 465 LLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDC 505



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 124/266 (46%), Gaps = 8/266 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+  R   P + ++N L      + +      LF R+   GL PD+  YN+L
Sbjct: 283 EAQGVFAVMMK-RGEKPDIVTYNALMEGFCLSNNVSEARELFNRMVKRGLEPDVLNYNVL 341

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+  V    V+   I      P+   + SLI GLC   R+     L  ++   G 
Sbjct: 342 INGYCKIDMVDEAMVLFKEIRCKNLVPNLATYNSLIDGLCKLGRMSCVQELVDEMCDRGQ 401

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY+  ++  C++     A++LF ++  G         P+   Y  I++  CK   
Sbjct: 402 SPDIVTYNIFLDAFCKSKPYEKAISLFRQIVQG-------IWPDFYMYDVIVENFCKGEK 454

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+E    +      P+V TY  +I+  C    ++EA  LL +M D    PD VTF  
Sbjct: 455 LKIAEEALQHLLIHGCCPNVRTYTIMINALCKDCSFDEAMTLLSKMDDNDCPPDAVTFET 514

Query: 329 IMDELCKNGKMDEASRLLELMILRGV 354
           I+  L +  + D+A +L   MI RG+
Sbjct: 515 IIGALQERNETDKAEKLRLEMIERGL 540


>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
          Length = 688

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 193/339 (56%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  ML  RP P  +  F  L G + + +  D V+SL++++    +  D+Y++NI
Sbjct: 61  EDAIDLFSDMLRSRPLPS-VVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++       G+I +    PD V FT+L+ GLC E R+ EA   F ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK-------- 250
           C+PNV+T++TL+NGLCR G  + A+ L + M     +     +G +    CK        
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        PN V Y+ IID LCK+G    A+ LF +M++K I PD+ TYNS+I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC +  W++A  LL EM+++ + PDVVT+N +++   K GK  EA+ L + M+ RG+ PN
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPN 359

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T T+++++DGFC   R++ A+++F  M + GC   VF++
Sbjct: 360 TITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTF 398



 Score =  181 bits (458), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 108/328 (32%), Positives = 160/328 (48%), Gaps = 52/328 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K   +    +LF  +   G+FPDL+TYN +I  FC  GR S    +
Sbjct: 253 PNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQL 312

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L    +PD V + +LI     E +  EAA L+ ++   G  PN ITY+++I+G C+
Sbjct: 313 LQEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 372

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  MA         C P+  T+TT+IDG C    +D   EL  +M  + +
Sbjct: 373 QDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 426

Query: 285 NPDVVTYNSLIHGFCYANDWNEA-------------------NCLL------------IE 313
             + VTYN+LIHGFC   D N A                   N LL            +E
Sbjct: 427 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 486

Query: 314 M--------MD-------QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           M        MD        GV+PDV+T+N+++  L   GK  EA  L E M  RG+ P+T
Sbjct: 487 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 546

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            T+S+++DG C   R++ A ++FVSM S
Sbjct: 547 ITYSSMIDGLCKQSRLDEATQMFVSMGS 574



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA  + D M+     P  +T   ++ G + K     + L+L +++     + P++  Y+ 
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDG-MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GR S    +   +      PD   + S+I G C+  R  +A  L  ++    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ LIN   + G    A  L++EM       G++  PNT+TY ++IDG CK+ 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAAELYDEML----PRGII--PNTITYNSMIDGFCKQD 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+++F  M  K  +PDV T+ +LI G+C A   ++   LL EM  +G+  + VT+N
Sbjct: 375 RLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++   C  G ++ A  L + MI  GV P+  T +TL+DG C  G++  A E+F +M+
Sbjct: 435 TLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 492



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 157/306 (51%), Gaps = 8/306 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML  R   P   ++N +     K    D    +F  + + G  PD++T+  L
Sbjct: 343 EAAELYDEMLP-RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  + R     + V + +LI G C    +  A  L  ++ + G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDG 262
            P+++T +TL++GLC  G    AL +F+ M       + +  F  V +P+ +TY  +I G
Sbjct: 462 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICG 520

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  + + M  +   P+
Sbjct: 521 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 580

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVTFN +++  CK G++D+   L   M  RG+  +   + TL+ GF   G +N A ++F 
Sbjct: 581 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 640

Query: 383 SMESMG 388
            M S G
Sbjct: 641 EMISSG 646



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 156/301 (51%), Gaps = 17/301 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P + +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 384 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 443

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +  +++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 503

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V+TY+ LI GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 504 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F+ M  K+ +P+VVT+N+LI+G+C A   ++   L  EM  +G+  D +
Sbjct: 558 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 617

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +  ++    K G ++ A  + + MI  GV P+T T   ++ GF     +  A  +   +
Sbjct: 618 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 677

Query: 385 E 385
           +
Sbjct: 678 Q 678



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 18/228 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----------GLFPDLYTYNILINCFC 153
           P + + N L   L         L +FK +  +           G+ PD+ TYNILI    
Sbjct: 463 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 522

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+      +   +      PD + ++S+I GLC +SR+ EA  +F  + +    PNV+
Sbjct: 523 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 582

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++TLING C+ G     L LF EM    G+ G+V   + + Y T+I G  K G ++ A 
Sbjct: 583 TFNTLINGYCKAGRVDDGLELFCEM----GRRGIV--ADAIIYITLIYGFRKVGNINGAL 636

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQ 320
           ++F +M    + PD +T  +++ GF    +   A  +L ++ M  G Q
Sbjct: 637 DIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQ 684



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 1/155 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+N L
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTL 587

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     DA+ + +LI G      I  A  +F ++ + G 
Sbjct: 588 INGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 647

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
            P+ IT   ++ G         A+ + E++    G
Sbjct: 648 YPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVG 682


>gi|356529513|ref|XP_003533335.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 794

 Score =  237 bits (605), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 128/309 (41%), Positives = 185/309 (59%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  R   PP+  FN +    AK KHY T +SL  RL   G+ PDL+T NI
Sbjct: 290 DKALNLFKEMILSRF--PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNI 347

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG+++ GF VL +IL+  + P  V   +LIKGLC + ++ +A     KL A G
Sbjct: 348 LINCFCHMGQITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQG 407

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++Y+TLING+C+ G T  A+ L  ++       G + KPN   Y+TIID LCK  
Sbjct: 408 FQLNQVSYATLINGVCKIGDTRGAIKLLRKID------GRLTKPNVEMYSTIIDALCKYQ 461

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ DVVTY++LI+GFC      EA  LL EM+ + + PDV T+ 
Sbjct: 462 LVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKEAIGLLNEMVLKTINPDVRTYT 521

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D L K GK+ EA  +L +M+   V P+  T++TLM+G+ L   V  A+ +F +M  M
Sbjct: 522 ILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSLM 581

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 582 GVTPDVHTY 590



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 159/299 (53%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R + P +  ++ +   L K +       LF  +   G+  D+ TY+ LI  FC +G+
Sbjct: 438 IDGRLTKPNVEMYSTIIDALCKYQLVSEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGK 497

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  ++     PD   +T L+  L  E ++ EA ++   +     KP+V TY+T
Sbjct: 498 LKEAIGLLNEMVLKTINPDVRTYTILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNT 557

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L+NG         A ++F  M+      GV   P+  TYT +I+G CK   VD+A  LF 
Sbjct: 558 LMNGYLLVYEVKKAQHVFNAMS----LMGVT--PDVHTYTILINGFCKSKMVDEALNLFK 611

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  KN+ PD VTY+SL+ G C +   +    L+ EM D+G   DV+T+N ++D LCKNG
Sbjct: 612 EMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNG 671

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +D+A  L   M  +G+ PNT TF+ L+DG C  GR+  A+E+F  + + G    V+ Y
Sbjct: 672 HLDKAIALFNKMKDQGIRPNTFTFTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIY 730



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 161/304 (52%), Gaps = 11/304 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +EA+ +F  M     S   +T   L++G   + K K     + L   +    + PD+ TY
Sbjct: 464 SEAYGLFSEMTVKGISADVVTYSTLIYGFCIVGKLKE---AIGLLNEMVLKTINPDVRTY 520

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            IL++   K G+V     VL  +L++C  PD   + +L+ G      + +A  +F  +  
Sbjct: 521 TILVDALGKEGKVKEAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQHVFNAMSL 580

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+V TY+ LING C++     ALNLF+EM   N        P+TVTY++++DGLCK
Sbjct: 581 MGVTPDVHTYTILINGFCKSKMVDEALNLFKEMHQKN------MVPDTVTYSSLVDGLCK 634

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +    +L  +M+D+    DV+TYNSLI G C     ++A  L  +M DQG++P+  T
Sbjct: 635 SGRISYVWDLIDEMRDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQGIRPNTFT 694

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F +++D LCK G++ +A  + + ++ +G + +   ++ ++ G C  G +  A  +   ME
Sbjct: 695 FTILLDGLCKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKME 754

Query: 386 SMGC 389
             GC
Sbjct: 755 ENGC 758



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/233 (41%), Positives = 137/233 (58%), Gaps = 6/233 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL +IL+  + PD V   +LIKGLC + ++ EA     KL A G + N ++Y+TLING+C
Sbjct: 50  VLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVC 109

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G T  A+    ++       G + KPN   Y TIID LCK   V +A  LF +M  K 
Sbjct: 110 RIGDTRAAIKFLRKID------GRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG 163

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I+ +VVTY++LI+GFC      EA  LL  M+ + + P+V T+N+++D LCK GK+ EA 
Sbjct: 164 ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAK 223

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L +M+   V  N  T+STLMDG+ L   V  A+ +F +M  MG    V SY
Sbjct: 224 SVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSY 276



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/271 (34%), Positives = 143/271 (52%), Gaps = 17/271 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCL-----AKTKHYDTVLSLFKRLNSTGLFPDLY 143
           EA  +   ML     P   T   L+ G L      K +H      +F  ++  G+ PD++
Sbjct: 535 EAKSVLAVMLKACVKPDVFTYNTLMNGYLLVYEVKKAQH------VFNAMSLMGVTPDVH 588

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY ILIN FCK   V     +   + +    PD V ++SL+ GLC   RI     L  ++
Sbjct: 589 TYTILINGFCKSKMVDEALNLFKEMHQKNMVPDTVTYSSLVDGLCKSGRISYVWDLIDEM 648

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           +  G   +VITY++LI+GLC+ GH   A+ LF +M +         +PNT T+T ++DGL
Sbjct: 649 RDRGQPADVITYNSLIDGLCKNGHLDKAIALFNKMKDQG------IRPNTFTFTILLDGL 702

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +  A+E+F  +  K  + DV  YN +I+G C      EA  +L +M + G  P+ 
Sbjct: 703 CKGGRLKDAQEVFQDLLTKGYHLDVYIYNVMIYGHCKQGLLEEALTMLSKMEENGCIPNA 762

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           VTF++I++ L K  + D+A +LL  MI RG+
Sbjct: 763 VTFDIIINALFKKDENDKAEKLLRQMIARGL 793



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 123/258 (47%), Gaps = 6/258 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           LS+  ++   G  PD  T N LI   C  G+V        ++L   F  + V++ +LI G
Sbjct: 48  LSVLTKILKRGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLING 107

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           +C       A     K+     KPNV  Y+T+I+ LC+      A  LF EM        
Sbjct: 108 VCRIGDTRAAIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKG---- 163

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
                N VTY+T+I G C  G + +A  L   M  K INP+V TYN L+   C      E
Sbjct: 164 --ISANVVTYSTLIYGFCIVGKLKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKE 221

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +L  M+   V+ +V+T++ +MD      ++ +A  +   M L GV P+  +++ +++
Sbjct: 222 AKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMIN 281

Query: 367 GFCLTGRVNHAKELFVSM 384
           GFC   RV+ A  LF  M
Sbjct: 282 GFCKIKRVDKALNLFKEM 299



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 7/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R + P +  +N +   L K +       LF  +   G+  ++ TY+ LI  FC +G+
Sbjct: 124 IDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGK 183

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  ++     P+   +  L+  LC E ++ EA ++   +     K NVITYST
Sbjct: 184 LKEALGLLNVMVLKTINPNVCTYNILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYST 243

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L++G         A ++F  M+      GV   P+  +Y  +I+G CK   VDKA  LF 
Sbjct: 244 LMDGYFLVYEVKKAQHVFNAMS----LMGVT--PDVHSYNIMINGFCKIKRVDKALNLFK 297

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M      P ++ +N ++  F     ++ A  L   +  +G+QPD+ T N++++  C  G
Sbjct: 298 EMILSRF-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMG 356

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++     +L  ++ RG  P+T T +TL+ G CL G+V  A      + + G +    SY
Sbjct: 357 QITFGFSVLAKILKRGYPPSTVTLNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSY 415



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 7/295 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP   + N L   L         L    +L + G   +  +Y  LIN  C++G    
Sbjct: 57  RGYPPDTVTLNTLIKGLCLKGQVKEALHFHDKLLAQGFQLNQVSYATLINGVCRIGDTRA 116

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               L +I      P+   + ++I  LC    + EA  LF+++   G   NV+TYSTLI 
Sbjct: 117 AIKFLRKIDGRLAKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTVKGISANVVTYSTLIY 176

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G    AL L   M            PN  TY  ++D LCKEG V +AK +   M 
Sbjct: 177 GFCIVGKLKEALGLLNVMVLKT------INPNVCTYNILVDALCKEGKVKEAKSVLAVML 230

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  +V+TY++L+ G+    +  +A  +   M   GV PDV ++N++++  CK  ++D
Sbjct: 231 KACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSLMGVTPDVHSYNIMINGFCKIKRVD 290

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           +A  L + MIL    P    F+ ++D F      + A  L   +E  G +  +F+
Sbjct: 291 KALNLFKEMILSRF-PPIIQFNKILDSFAKMKHYSTAVSLSHRLELKGIQPDLFT 344



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 149/311 (47%), Gaps = 12/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +EA+ +F  M     S   +T   L++G   + K K     L L   +    + P++ TY
Sbjct: 150 SEAYGLFSEMTVKGISANVVTYSTLIYGFCIVGKLKE---ALGLLNVMVLKTINPNVCTY 206

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NIL++  CK G+V     VL  +L++C   + + +++L+ G      + +A  +F  +  
Sbjct: 207 NILVDALCKEGKVKEAKSVLAVMLKACVKSNVITYSTLMDGYFLVYEVKKAQHVFNAMSL 266

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+V +Y+ +ING C+      ALNLF+EM     +F     P  + +  I+D   K
Sbjct: 267 MGVTPDVHSYNIMINGFCKIKRVDKALNLFKEMI--LSRF-----PPIIQFNKILDSFAK 319

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
                 A  L  +++ K I PD+ T N LI+ FC+         +L +++ +G  P  VT
Sbjct: 320 MKHYSTAVSLSHRLELKGIQPDLFTLNILINCFCHMGQITFGFSVLAKILKRGYPPSTVT 379

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N ++  LC  G++ +A    + ++ +G   N  +++TL++G C  G    A +L   ++
Sbjct: 380 LNTLIKGLCLKGQVKKALHFHDKLLAQGFQLNQVSYATLINGVCKIGDTRGAIKLLRKID 439

Query: 386 SMGCKHTVFSY 396
               K  V  Y
Sbjct: 440 GRLTKPNVEMY 450


>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 592

 Score =  237 bits (605), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 129/336 (38%), Positives = 189/336 (56%), Gaps = 13/336 (3%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           ++     F++ +CKS   G + +I  +EA   F  M  M P P  +  F LL G + K K
Sbjct: 36  NKTQFLNFMRNQCKS---GKLKSI--DEALNFFHTMAKMNPLPS-VIDFTLLLGFIVKMK 89

Query: 122 HYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           HY T +SL K ++S+ G+ PD +  N++IN  C +  V+ GF VLG +L+    P  V F
Sbjct: 90  HYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLKLVAFGFSVLGTMLKLGLEPSVVTF 149

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           T LI GLC +  +  A  L   ++  G + +V TY  LINGLC+ G T  A+    +M  
Sbjct: 150 TILINGLCVKGDVGRAVELVDHVEKTGYRSDVKTYGVLINGLCKMGKTSEAVGWLRKMEE 209

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
            N        PN V Y+T++DGLCK+G V +A  L L+M  K I P++VTY  LI G C 
Sbjct: 210 RN------WNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCN 263

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
              W EA  LL EMM  GV PD+ + N+++D LCK GK+ +A  ++  MIL G  P+  T
Sbjct: 264 FGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFT 323

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++L+D +CL  +++ A  +F  M S GC   + +Y
Sbjct: 324 YNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAY 359



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++  L   L     +    SL   +   G+ PDL + NIL++  CK G++     V
Sbjct: 249 PNLVTYTCLIQGLCNFGRWKEAGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSV 308

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +G ++     PD   + SLI   C ++++ EA  +F  + + GC P+++ Y++LI+G C+
Sbjct: 309 IGFMILVGEVPDVFTYNSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCK 368

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A++L +EM     K G    P+ VT+TT+I G C+ G    AKELFL M     
Sbjct: 369 IKNINKAMHLLDEMI----KVGFT--PDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQ 422

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ T   ++ G C +   +EA  L   M    +  ++V +++I+D +C  GK++ A  
Sbjct: 423 VPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALE 482

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L   +  +G+  N   ++ +++GF   G ++ A++L  +ME  GC
Sbjct: 483 LFSCLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEENGC 527



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 142/296 (47%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P +  ++ +   L K       L L   ++  G+ P+L TY  LI   C  GR   
Sbjct: 210 RNWNPNVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKE 269

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  +++    PD  +   L+  LC E +IM+A ++   +   G  P+V TY++LI+
Sbjct: 270 AGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSLID 329

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             C       A  +FE M +        C P+ V YT++I G CK   ++KA  L  +M 
Sbjct: 330 RYCLQNQMDEATRVFELMVSRG------CLPDIVAYTSLIHGWCKIKNINKAMHLLDEMI 383

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                PDVVT+ +LI GFC       A  L + M   G  P++ T  +I+D LCK+  + 
Sbjct: 384 KVGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLS 443

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  L   M    ++ N   +S ++DG C  G++N A ELF  + + G +  V++Y
Sbjct: 444 EALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAY 499



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/300 (30%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+ M   P  L S N+L   L K        S+   +   G  PD++TYN L
Sbjct: 269 EAGSLLDEMMKMGVMPD-LQSLNILVDVLCKEGKIMQAKSVIGFMILVGEVPDVFTYNSL 327

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   ++     V   ++     PD VA+TSLI G C    I +A  L  ++   G 
Sbjct: 328 IDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGF 387

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+T++TLI G C+ G  + A  LF  M     K+G V  PN  T   I+DGLCK   
Sbjct: 388 TPDVVTWTTLIGGFCQVGRPLAAKELFLNMH----KYGQV--PNLQTCAIILDGLCKSQL 441

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A  LF  M+  N++ ++V Y+ ++ G C A   N A  L   +  +G+Q +V  + +
Sbjct: 442 LSEALSLFHAMEKSNLDLNIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYAYTI 501

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++   K G +D+A  LL  M   G  P++ T++  + G      +  + +    M   G
Sbjct: 502 MINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKG 561



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 156/331 (47%), Gaps = 16/331 (4%)

Query: 52  LKESLRLTV-KDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSF 110
           L E +++ V  D  SL   +   CK   +G I      +A  +  +M+ +    P + ++
Sbjct: 274 LDEMMKMGVMPDLQSLNILVDVLCK---EGKIM-----QAKSVIGFMI-LVGEVPDVFTY 324

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L          D    +F+ + S G  PD+  Y  LI+ +CK+  ++    +L  +++
Sbjct: 325 NSLIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIK 384

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
             FTPD V +T+LI G C   R + A  LF  +  +G  PN+ T + +++GLC++     
Sbjct: 385 VGFTPDVVTWTTLIGGFCQVGRPLAAKELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSE 444

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL+LF  M   N         N V Y+ I+DG+C  G ++ A ELF  +  K +  +V  
Sbjct: 445 ALSLFHAMEKSNLDL------NIVIYSIILDGMCSAGKLNTALELFSCLPAKGLQINVYA 498

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y  +I+GF      ++A  LL  M + G  PD  T+NV +  L    ++  + + L +M 
Sbjct: 499 YTIMINGFAKQGLLDKAEDLLSNMEENGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMR 558

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +G + + +T   +++        N  +E  
Sbjct: 559 DKGFSVDATTTEMIINYLSTNQGDNELREFL 589


>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  236 bits (603), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 122/339 (35%), Positives = 191/339 (56%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  ML  RP  P +  F  L G + + +  D V+SL++++    +  D+Y++NI
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++       G+I +    PD V FT+L+ GLC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK-------- 250
           C+PNV+T++TL+NGLCR G  + A+ L + M     +     +G +    CK        
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        PN V Y+ IID LCK+G    A+ LF +M++K I PD+ TYNS+I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC +  W++A  LL EM+++ + PDVVT+N +++   K GK  EA  L + M+ RG+ PN
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T T+S+++DGFC   R++ A+ +F  M + GC   + ++
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 23/310 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
           R   P + ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 159 -SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++    + C +P+ + F +LI G C   RI +   L  ++   G   +  TY+T
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G    G    AL+L +EM +       +C P+ VT  T++DGLC  G +  A E+F 
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 278 QMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            M+              + PDV TYN LI G      + EA  L  EM  +G+ PD +T+
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++D LCK  ++DEA+++ + M  +  +PN  TF+TL++G+C  GRV+   ELF  M  
Sbjct: 550 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 610 RGIVANAITY 619



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA  + D M+     P  +T   ++ G + K     + L+L +++     + P++  Y+ 
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDG-MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GR S    +   +      PD   + S+I G C+  R  +A  L  ++    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ LIN   + G    A  L++EM       G++  PNT+TY+++IDG CK+ 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEML----PRGII--PNTITYSSMIDGFCKQN 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ +F  M  K  +P+++T+N+LI G+C A   ++   LL EM + G+  D  T+N
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++      G ++ A  LL+ MI  G+ P+  T  TL+DG C  G++  A E+F  M+
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 150/284 (52%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P L +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +P+VVT+ +LI+G+C A   ++   L  EM  +G+  + +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++    K G ++ A  + + MI  GV P+T T   ++ G 
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML     P  +T  +++ G   K    D    +F  + + G  P+L T+N L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  +  +    D   + +LI G      +  A  L  ++ + G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNTVTYTTIIDGL 263
            P+++T  TL++GLC  G    AL +F+ M                +P+  TY  +I GL
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  +   M  +   P+V
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF  +++  CK G++D+   L   M  RG+  N  T+ TL+ GF   G +N A ++F  
Sbjct: 582 VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 MESMG 388
           M S G
Sbjct: 642 MISSG 646



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+  L
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTL 587

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     +A+ + +LI G      I  A  +F ++ + G 
Sbjct: 588 INGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            P+ IT   ++ GL        A+ + E++
Sbjct: 648 YPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI  F K+G ++    +   ++ S   PD +   +++ GL ++  +  A A+  KL+
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|357449185|ref|XP_003594869.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483917|gb|AES65120.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 545

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 121/304 (39%), Positives = 178/304 (58%), Gaps = 6/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ +L+     PP   F  + G L K K Y T LSL +++   G+ PD  T N+L+NCF
Sbjct: 44  LFNRLLHKNNPIPPAIEFGKILGSLLKAKQYQTALSLSQQMEFNGIKPDFITCNLLMNCF 103

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            ++G +   F V  +IL+  + PDAV FT LIKGLC +  + +A     K+ A G + + 
Sbjct: 104 SQLGHIKFSFSVFAKILKKGYHPDAVTFTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQ 163

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           ++Y TLINGLCR G T  A+ L   +       G + +PN V Y+TIID +CK+  V+ A
Sbjct: 164 VSYGTLINGLCRVGETKAAVQLLRRVD------GKLVRPNVVMYSTIIDSMCKDKLVNDA 217

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L+ +M  K I+PDVVTY+SLI GFC       A  L   M+   + P+V TF++++D 
Sbjct: 218 FDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKYAVDLFNRMISDNINPNVYTFSILIDG 277

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            CK GK+ EA  +L +M+ + V  +  T+++LMDG+CL  +VN AK LF  M   G    
Sbjct: 278 FCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPD 337

Query: 393 VFSY 396
           V+SY
Sbjct: 338 VWSY 341



 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 106/313 (33%), Positives = 180/313 (57%), Gaps = 15/313 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           N+AF ++  M++ R SP  +T  +L+ G C+     Y   + LF R+ S  + P++YT++
Sbjct: 215 NDAFDLYCEMVSKRISPDVVTYSSLISGFCVVGKLKY--AVDLFNRMISDNINPNVYTFS 272

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI+ FCK G+V     VL  +++     D V + SL+ G C   ++ +A +LF  +   
Sbjct: 273 ILIDGFCKEGKVREAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQR 332

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGL 263
           G  P+V +YS +ING C+      A+ LFEEM          CK   PN VTY +++DGL
Sbjct: 333 GVTPDVWSYSIMINGFCKIKMVDEAMKLFEEMH---------CKQIFPNVVTYNSLVDGL 383

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G    A EL  +M D+    +++TYNS++   C  N  ++A  LL ++ ++G+QPD+
Sbjct: 384 CKSGRTSCALELVDEMHDRGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDI 443

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+ V+++ LCK G++D+A ++ E ++++G +PN  T+++L++GFC  G  +    +   
Sbjct: 444 FTYTVLINGLCKVGRLDDAQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSK 503

Query: 384 MESMGCKHTVFSY 396
           M+  GC     +Y
Sbjct: 504 MKDNGCIPNAITY 516



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 160/307 (52%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +F  +L     P  +T F +L   L         L    ++ + G   D  +Y  LI
Sbjct: 112 SFSVFAKILKKGYHPDAVT-FTILIKGLCLKGEVHKALYFHDKVVAQGFQLDQVSYGTLI 170

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C++G       +L R+      P+ V ++++I  +C +  + +A  L+ ++ +    
Sbjct: 171 NGLCRVGETKAAVQLLRRVDGKLVRPNVVMYSTIIDSMCKDKLVNDAFDLYCEMVSKRIS 230

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V+TYS+LI+G C  G    A++LF  M + N        PN  T++ +IDG CKEG V
Sbjct: 231 PDVVTYSSLISGFCVVGKLKYAVDLFNRMISDN------INPNVYTFSILIDGFCKEGKV 284

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +AK +   M  KN+  DVVTYNSL+ G+C     N+A  L   M  +GV PDV +++++
Sbjct: 285 REAKNVLAVMMKKNVKLDVVTYNSLMDGYCLVKQVNKAKSLFNVMAQRGVTPDVWSYSIM 344

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++  CK   +DEA +L E M  + + PN  T+++L+DG C +GR + A EL   M   G 
Sbjct: 345 INGFCKIKMVDEAMKLFEEMHCKQIFPNVVTYNSLVDGLCKSGRTSCALELVDEMHDRGQ 404

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 405 PSNIITY 411



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 70/138 (50%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P  + ++N +   + K  H D  + L  ++   G+ PD++TY +LIN  CK+GR+  
Sbjct: 402 RGQPSNIITYNSILDAICKNNHVDKAIVLLTKIKEKGIQPDIFTYTVLINGLCKVGRLDD 461

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +L   ++P+   +TSLI G C +    E  A+ +K+K  GC PN ITY  LI+
Sbjct: 462 AQKVFEDLLVKGYSPNIYTYTSLINGFCNKGFFDEGLAMLSKMKDNGCIPNAITYEILIH 521

Query: 221 GLCRTGHTIVALNLFEEM 238
            L        A  L  EM
Sbjct: 522 SLFEKDENDKAEKLLREM 539


>gi|388521091|gb|AFK48607.1| unknown [Medicago truncatula]
          Length = 506

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 118/307 (38%), Positives = 184/307 (59%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F+ +L+  P+      FN + G L K+KHY TVLSL +++   G+ P+  T+NILI
Sbjct: 52  AVSLFNSLLHQNPTLTAF-EFNKILGSLVKSKHYHTVLSLSQQMEFEGINPNFVTFNILI 110

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           NCFC++G +   F VL +IL+  + PD +   + IKG C + +I +A     KL A G  
Sbjct: 111 NCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIHQALNFHDKLVALGFH 170

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + ++Y TLINGLC+ G T  AL L   +       G + + N V Y T+IDG+ K+  V
Sbjct: 171 LDQVSYGTLINGLCKVGETRAALQLLRRVD------GKLVQLNAVMYNTVIDGMSKDKHV 224

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A +L+ +M  K I+PDVVTY++LI GF       +A  L  +M+ + ++PDV TFN++
Sbjct: 225 NDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNIL 284

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D  CK G++ +A  +L++M+++ + PN STF+TL+DGFC   ++   K +F  M   G 
Sbjct: 285 VDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGI 344

Query: 390 KHTVFSY 396
           K  V +Y
Sbjct: 345 KPNVVTY 351



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 157/305 (51%), Gaps = 12/305 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           AF +   +L M   P  +T    + G CL    H    L+   +L + G   D  +Y  L
Sbjct: 122 AFSVLAKILKMGYEPDIITLNTFIKGFCLKGQIH--QALNFHDKLVALGFHLDQVSYGTL 179

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G       +L R+       +AV + ++I G+  +  + +A  L++++ A   
Sbjct: 180 INGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSEMVAKRI 239

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TYS LI G    G    A++LF +M   N       KP+  T+  ++DG CKEG 
Sbjct: 240 SPDVVTYSALIRGFFIVGKLKDAIDLFNKMILEN------IKPDVYTFNILVDGFCKEGR 293

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + KAK +   M  ++I P+V T+N+L+ GFC      E   +   MM QG++P+VVT+  
Sbjct: 294 LKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPNVVTYCS 353

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +MD  C   ++++A ++   M  RGV  N  +++ +++GFC   +V+ A +LF+ M    
Sbjct: 354 LMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFIEMHH-- 411

Query: 389 CKHTV 393
            KH +
Sbjct: 412 -KHII 415



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/288 (32%), Positives = 152/288 (52%), Gaps = 30/288 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M+  R SP  +T   L+ G     K  D +  LF ++    + PD+YT+NI
Sbjct: 225 NDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAI-DLFNKMILENIKPDVYTFNI 283

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK GR+     VL  ++     P+   F +L+ G C + ++ E   +F  +   G
Sbjct: 284 LVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQG 343

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPNV+TY +L++G C       A  +F  M+    + GV    N  +Y  +I+G CK  
Sbjct: 344 IKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMS----QRGVTA--NVHSYNIMINGFCKIK 397

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA-------------------- 307
            VDKA +LF++M  K+I PDVVTYNSLI G C +   + A                    
Sbjct: 398 KVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITYN 457

Query: 308 ---NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
              N LL ++ DQG+QP++ T  +++  LC++GK++ A ++ E ++++
Sbjct: 458 SILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVFEDLLVK 505



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 152/299 (50%), Gaps = 37/299 (12%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   ++K KH +    L+  + +  + PD+ TY+ LI  F  +G++     +  +++
Sbjct: 211 YNTVIDGMSKDKHVNDAFDLYSEMVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMI 270

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   F  L+ G C E R+ +A  +   +     KPNV T++TL++G C+     
Sbjct: 271 LENIKPDVYTFNILVDGFCKEGRLKKAKNVLDMMMIQDIKPNVSTFNTLVDGFCKD---- 326

Query: 230 VALNLFEEMANGNGKFGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                  +M  G   F ++     KPN VTY +++DG C    V+KAK++F  M  + + 
Sbjct: 327 ------RKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVT 380

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            +V +YN +I+GFC     ++A  L IEM  + + PDVVT+N ++D LCK+GK+  A +L
Sbjct: 381 ANVHSYNIMINGFCKIKKVDKAMKLFIEMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQL 440

Query: 346 LELM--------------IL---------RGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +  M              IL         +G+ PN  T + L+ G C +G++  A+++F
Sbjct: 441 VNEMHDRGQPPNIITYNSILNALLTKLKDQGIQPNMHTDTILIKGLCQSGKLEAARKVF 499



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 151/289 (52%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L K       L L +R++   +  +   YN +I+   K   V+  F +   
Sbjct: 174 VSYGTLINGLCKVGETRAALQLLRRVDGKLVQLNAVMYNTVIDGMSKDKHVNDAFDLYSE 233

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++    +PD V +++LI+G     ++ +A  LF K+     KP+V T++ L++G C+ G 
Sbjct: 234 MVAKRISPDVVTYSALIRGFFIVGKLKDAIDLFNKMILENIKPDVYTFNILVDGFCKEGR 293

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A N+ + M   +       KPN  T+ T++DG CK+  + + K +F  M  + I P+
Sbjct: 294 LKKAKNVLDMMMIQD------IKPNVSTFNTLVDGFCKDRKMKEGKTVFAMMMKQGIKPN 347

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTY SL+ G+C     N+A  +   M  +GV  +V ++N++++  CK  K+D+A +L  
Sbjct: 348 VVTYCSLMDGYCLVKQVNKAKKIFNTMSQRGVTANVHSYNIMINGFCKIKKVDKAMKLFI 407

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  + + P+  T+++L+DG C +G++++A +L   M   G    + +Y
Sbjct: 408 EMHHKHIIPDVVTYNSLIDGLCKSGKISYAFQLVNEMHDRGQPPNIITY 456



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 72/152 (47%), Gaps = 1/152 (0%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           F ++ + N + Y++I         VD A  LF  +  +N       +N ++     +  +
Sbjct: 26  FLILLQKNFIPYSSISTTFHSND-VDGAVSLFNSLLHQNPTLTAFEFNKILGSLVKSKHY 84

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +    L  +M  +G+ P+ VTFN++++  C+ G +  A  +L  ++  G  P+  T +T 
Sbjct: 85  HTVLSLSQQMEFEGINPNFVTFNILINCFCQLGLIPFAFSVLAKILKMGYEPDIITLNTF 144

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + GFCL G+++ A      + ++G      SY
Sbjct: 145 IKGFCLKGQIHQALNFHDKLVALGFHLDQVSY 176


>gi|238908350|emb|CAZ40335.1| non restoring pentatricopeptide repeat [Raphanus sativus]
          Length = 683

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 210/380 (55%), Gaps = 39/380 (10%)

Query: 49  TAKLKESLRLTVKDRASLEQ-FLKERCK-SSGQGDITAITPNEAFCIFDYMLNMRPSPPP 106
           T  ++ +L    +D  S E  F  E  K  SG  +I  +   +A  +F  ML  RP P  
Sbjct: 24  TGSIRHALAEKSRDGESGEAGFRGESLKLRSGSYEIKGL--EDAIDLFSDMLRSRPLPS- 80

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  FN L G + + +  D V+SL++++    +  D+Y++ ILI CFC   ++       G
Sbjct: 81  VIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG 140

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++ +    PD V FT+L+ GLC + R+ EA  LF ++    C+P+V+T++TL+NGLCR G
Sbjct: 141 KLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREG 196

Query: 227 HTIVALNLFEEMA---------------NGNGKFGVVC---------------KPNTVTY 256
             + A+ L + M                +G  K G                  KPN V Y
Sbjct: 197 RVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIY 256

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + IIDGLCK+G    +  LF++M+DK I P++VTYN +I GFC +  W+ A  LL EM++
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P+VVT+N +++   K GK  EA+ L + M+ RG+ PNT T+++++DGFC   R++ 
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+++F  M + GC   VF++
Sbjct: 377 AEDMFYLMATKGCSPDVFTF 396



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 159/328 (48%), Gaps = 52/328 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K   +    +LF  +   G+FP++ TYN +I  FC  GR S    +
Sbjct: 251 PNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRL 310

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L    +P+ V + +LI     E +  EAA L+ ++   G  PN ITY+++I+G C+
Sbjct: 311 LQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 370

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  MA         C P+  T+TT+IDG C    +D   EL  +M  + +
Sbjct: 371 QDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 424

Query: 285 NPDVVTYNSLIHGFCYANDWNEA-------------------NCLL------------IE 313
             + VTYN+LIHGFC   D N A                   N LL            +E
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 484

Query: 314 M--------MD-------QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           M        MD        GV+PDV+T+N+++  L   GK  EA  L E M  RG+ P+T
Sbjct: 485 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 544

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            T+S+++DG C   R++ A ++FVSM S
Sbjct: 545 ITYSSMIDGLCKQSRLDEATQMFVSMGS 572



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 17/299 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+  
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +     +PD   FT+LI G C   RI +   L  ++   G   N +TY+TLI+
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 436

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G    AL+L ++M +       VC P+ VT  T++DGLC  G +  A E+F  M+
Sbjct: 437 GFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 281 DK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
                         + PDV+TYN LI G      + EA  L  EM  +G+ PD +T++ +
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D LCK  ++DEA+++   M  +  +PN  TF+TL++G+C  GRV+   ELF  M   G
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 157/306 (51%), Gaps = 8/306 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML  R   P   ++N +     K    D    +F  + + G  PD++T+  L
Sbjct: 341 EAAELYDEMLP-RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 399

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  + R     + V + +LI G C    +  A  L  ++ + G 
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDG 262
            P+++T +TL++GLC  G    AL +F+ M       + +  F  V +P+ +TY  +I G
Sbjct: 460 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICG 518

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  + + M  +   P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVTFN +++  CK G++D+   L   M  RG+  +   + TL+ GF   G +N A ++F 
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 383 SMESMG 388
            M S G
Sbjct: 639 EMISSG 644



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 151/284 (53%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P + +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +  +++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V+TY+ LI GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F+ M  K+ +P+VVT+N+LI+G+C A   ++   L  EM  +G+  D +
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  ++    K G ++ A  + + MI  GV P+T T   ++ GF
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 17/251 (6%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L          +  L L +++ S+G+ PD+ T N L++  C  G++     +   
Sbjct: 429 VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 168 ILRS-----------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           + +S              PD + +  LI GL  E + +EA  L+ ++   G  P+ ITYS
Sbjct: 489 MQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++I+GLC+      A  +F  M  G+  F     PN VT+ T+I+G CK G VD   ELF
Sbjct: 549 SMIDGLCKQSRLDEATQMFVSM--GSKSF----SPNVVTFNTLINGYCKAGRVDDGLELF 602

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  + I  D + Y +LI+GF    + N A  +  EM+  GV PD +T   ++      
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK 662

Query: 337 GKMDEASRLLE 347
            +++ A  +LE
Sbjct: 663 EELERAVAMLE 673



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 106/221 (47%), Gaps = 17/221 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----------GLFPDLYTYNILINCFC 153
           P + + N L   L         L +FK +  +           G+ PD+ TYNILI    
Sbjct: 461 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 520

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+      +   +      PD + ++S+I GLC +SR+ EA  +F  + +    PNV+
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 580

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++TLING C+ G     L LF EM    G+ G+V   + + Y T+I G  K G ++ A 
Sbjct: 581 TFNTLINGYCKAGRVDDGLELFCEM----GRRGIVA--DAIIYITLIYGFRKVGNINGAL 634

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           ++F +M    + PD +T  +++ GF    +   A  +L ++
Sbjct: 635 DIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+N L
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTL 585

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     DA+ + +LI G      I  A  +F ++ + G 
Sbjct: 586 INGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            P+ IT   ++ G         A+ + E++
Sbjct: 646 YPDTITIRNMLTGFWSKEELERAVAMLEDL 675



 Score = 46.2 bits (108), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 24/102 (23%), Positives = 44/102 (43%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L     K    D  L LF  +   G+  D   Y  LI  F K+G ++    +
Sbjct: 577 PNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDI 636

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
              ++ S   PD +   +++ G  ++  +  A A+   L+ +
Sbjct: 637 FQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQRY 678


>gi|356561677|ref|XP_003549106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 511

 Score =  236 bits (602), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 129/307 (42%), Positives = 175/307 (57%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A   F+ ML MRP PPP   FN +   L   KHY TV+SLFK+    G+ PDL T +ILI
Sbjct: 41  AVASFNLMLLMRP-PPPTFHFNNILSSLVNNKHYPTVISLFKQFEPNGITPDLCTLSILI 99

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           NCFC    ++  F V   IL+  F P+A+   +LIKGLC    I +A     +L A G +
Sbjct: 100 NCFCHQAHITLAFSVFANILKRGFHPNAITLNTLIKGLCFRGEIKKALYFHDQLVAQGFQ 159

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + ++Y TLINGLC+TG T     L  ++       G   KP+ V Y TII+ LCK   +
Sbjct: 160 LDQVSYGTLINGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKNKLL 213

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A +++ +M  K I+PDVVTY +LIHGFC      EA  LL EM  + + P+V TFN++
Sbjct: 214 GDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNIL 273

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D L K GKM EA  LL +M+   + P+  T+++L+DG+ L   V HAK +F SM   G 
Sbjct: 274 IDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGV 333

Query: 390 KHTVFSY 396
              V  Y
Sbjct: 334 TPDVQCY 340



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/285 (33%), Positives = 148/285 (51%), Gaps = 6/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K K       ++  +   G+ PD+ TY  LI+ FC MG +   F +
Sbjct: 195 PDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGHLKEAFSL 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+   F  LI  L  E ++ EA  L   +     KP+V TY++LI+G   
Sbjct: 255 LNEMKLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSLIDGYFL 314

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +F  MA      GV   P+   YT +I+GLCK   VD+A  LF +MK KN+
Sbjct: 315 VDEVKHAKYVFYSMAQR----GVT--PDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNM 368

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTYNSLI G C  +    A  L   M +QG+QPDV ++ +++D LCK+G++++A  
Sbjct: 369 IPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGIQPDVYSYTILLDGLCKSGRLEDAKE 428

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           + + ++ +G + N   ++ L++  C  G  + A +L   ME  GC
Sbjct: 429 IFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGC 473



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/289 (31%), Positives = 144/289 (49%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L KT     V  L ++L    + PD+  YN +IN  CK   +     V   
Sbjct: 163 VSYGTLINGLCKTGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 222

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++    +PD V +T+LI G C    + EA +L  ++K     PNV T++ LI+ L + G 
Sbjct: 223 MIVKGISPDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGK 282

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  L   M           KP+  TY ++IDG      V  AK +F  M  + + PD
Sbjct: 283 MKEAKILLAVMMKA------CIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPD 336

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V  Y ++I+G C     +EA  L  EM  + + PD+VT+N ++D LCKN  ++ A  L +
Sbjct: 337 VQCYTNMINGLCKTKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALCK 396

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  +G+ P+  +++ L+DG C +GR+  AKE+F  + + G    V +Y
Sbjct: 397 RMKEQGIQPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAY 445



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 86/266 (32%), Positives = 145/266 (54%), Gaps = 7/266 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M  ++   P + +FN+L   L+K         L   +    + PD++TYN L
Sbjct: 250 EAFSLLNEM-KLKNINPNVCTFNILIDALSKEGKMKEAKILLAVMMKACIKPDVFTYNSL 308

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +  +  V H   V   + +   TPD   +T++I GLC    + EA +LF ++K    
Sbjct: 309 IDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCKTKMVDEAMSLFEEMKHKNM 368

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY++LI+GLC+  H   A+ L + M           +P+  +YT ++DGLCK G 
Sbjct: 369 IPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQG------IQPDVYSYTILLDGLCKSGR 422

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ AKE+F ++  K  + +V  Y  LI+  C A  ++EA  L  +M D+G  PD VTF++
Sbjct: 423 LEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALDLKSKMEDKGCMPDAVTFDI 482

Query: 329 IMDELCKNGKMDEASRLLELMILRGV 354
           I+  L +  + D+A ++L  MI RG+
Sbjct: 483 IIRALFEKDENDKAEKILREMIARGL 508



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L        H     SL   +    + P++ T+NILI+   K G++    ++
Sbjct: 230 PDVVTYTTLIHGFCIMGHLKEAFSLLNEMKLKNINPNVCTFNILIDALSKEGKMKEAKIL 289

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++++C  PD   + SLI G      +  A  +F  +   G  P+V  Y+ +INGLC+
Sbjct: 290 LAVMMKACIKPDVFTYNSLIDGYFLVDEVKHAKYVFYSMAQRGVTPDVQCYTNMINGLCK 349

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T     A++LFEEM + N        P+ VTY ++IDGLCK   +++A  L  +MK++ I
Sbjct: 350 TKMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAIALCKRMKEQGI 403

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV +Y  L+ G C +    +A  +   ++ +G   +V  + V+++ LCK G  DEA  
Sbjct: 404 QPDVYSYTILLDGLCKSGRLEDAKEIFQRLLAKGYHLNVHAYTVLINRLCKAGFFDEALD 463

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M  +G  P+  TF  ++         + A+++   M + G
Sbjct: 464 LKSKMEDKGCMPDAVTFDIIIRALFEKDENDKAEKILREMIARG 507


>gi|32527604|gb|AAP86199.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 686

 Score =  236 bits (602), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 210/380 (55%), Gaps = 39/380 (10%)

Query: 49  TAKLKESLRLTVKDRASLEQ-FLKERCK-SSGQGDITAITPNEAFCIFDYMLNMRPSPPP 106
           T  ++ +L    +D  S E  F  E  K  SG  +I  +   +A  +F  ML  RP P  
Sbjct: 24  TGSIRHALAEKSRDGESGEAGFRGESLKLRSGSYEIKGL--EDAIDLFSDMLRSRPLPS- 80

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  FN L G + + +  D V+SL++++    +  D+Y++ ILI CFC   ++       G
Sbjct: 81  VIDFNKLMGAVVRMERPDLVISLYQKMERKQIRCDIYSFTILIKCFCSCSKLPFALSTFG 140

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++ +    PD V FT+L+ GLC + R+ EA  LF ++    C+P+V+T++TL+NGLCR G
Sbjct: 141 KLTKLGLHPDVVTFTTLLHGLCLDHRVSEALDLFHQI----CRPDVLTFTTLMNGLCREG 196

Query: 227 HTIVALNLFEEMA---------------NGNGKFGVVC---------------KPNTVTY 256
             + A+ L + M                +G  K G                  KPN V Y
Sbjct: 197 RVVEAVALLDRMVENGLQPDQITYGTFVDGMCKMGDTVSALNLLRKMEEISHIKPNVVIY 256

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + IIDGLCK+G    +  LF++M+DK I P++VTYN +I GFC +  W+ A  LL EM++
Sbjct: 257 SAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRLLQEMLE 316

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P+VVT+N +++   K GK  EA+ L + M+ RG+ PNT T+++++DGFC   R++ 
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+++F  M + GC   VF++
Sbjct: 377 AEDMFYLMATKGCSPDVFTF 396



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/328 (32%), Positives = 159/328 (48%), Gaps = 52/328 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K   +    +LF  +   G+FP++ TYN +I  FC  GR S    +
Sbjct: 251 PNVVIYSAIIDGLCKDGRHSDSHNLFIEMQDKGIFPNIVTYNCMIGGFCISGRWSAAQRL 310

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L    +P+ V + +LI     E +  EAA L+ ++   G  PN ITY+++I+G C+
Sbjct: 311 LQEMLERKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCK 370

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  MA         C P+  T+TT+IDG C    +D   EL  +M  + +
Sbjct: 371 QDRLDAAEDMFYLMATKG------CSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGL 424

Query: 285 NPDVVTYNSLIHGFCYANDWNEA-------------------NCLL------------IE 313
             + VTYN+LIHGFC   D N A                   N LL            +E
Sbjct: 425 VANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALE 484

Query: 314 M--------MD-------QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           M        MD        GV+PDV+T+N+++  L   GK  EA  L E M  RG+ P+T
Sbjct: 485 MFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDT 544

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            T+S+++DG C   R++ A ++FVSM S
Sbjct: 545 ITYSSMIDGLCKQSRLDEATQMFVSMGS 572



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 151/299 (50%), Gaps = 17/299 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N L     K   +     L+  +   G+ P+  TYN +I+ FCK  R+  
Sbjct: 317 RKISPNVVTYNALINAFVKEGKFFEAAELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDA 376

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +     +PD   FT+LI G C   RI +   L  ++   G   N +TY+TLI+
Sbjct: 377 AEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIH 436

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G    AL+L ++M +       VC P+ VT  T++DGLC  G +  A E+F  M+
Sbjct: 437 GFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLCDNGKLKDALEMFKAMQ 490

Query: 281 DK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
                         + PDV+TYN LI G      + EA  L  EM  +G+ PD +T++ +
Sbjct: 491 KSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSM 550

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D LCK  ++DEA+++   M  +  +PN  TF+TL++G+C  GRV+   ELF  M   G
Sbjct: 551 IDGLCKQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRG 609



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 157/306 (51%), Gaps = 8/306 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML  R   P   ++N +     K    D    +F  + + G  PD++T+  L
Sbjct: 341 EAAELYDEMLP-RGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTL 399

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  + R     + V + +LI G C    +  A  L  ++ + G 
Sbjct: 400 IDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMISSGV 459

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDG 262
            P+++T +TL++GLC  G    AL +F+ M       + +  F  V +P+ +TY  +I G
Sbjct: 460 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGV-EPDVLTYNILICG 518

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  + + M  +   P+
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPN 578

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVTFN +++  CK G++D+   L   M  RG+  +   + TL+ GF   G +N A ++F 
Sbjct: 579 VVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQ 638

Query: 383 SMESMG 388
            M S G
Sbjct: 639 EMISSG 644



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 151/284 (53%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P + +F  L       K  D  + L   +   GL  +  TYN LI+ FC +
Sbjct: 382 YLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLIHGFCLV 441

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +  +++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 442 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHP 501

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V+TY+ LI GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 502 FNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F+ M  K+ +P+VVT+N+LI+G+C A   ++   L  EM  +G+  D +
Sbjct: 556 KQSRLDEATQMFVSMGSKSFSPNVVTFNTLINGYCKAGRVDDGLELFCEMGRRGIVADAI 615

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  ++    K G ++ A  + + MI  GV P+T T   ++ GF
Sbjct: 616 IYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGF 659



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/251 (29%), Positives = 122/251 (48%), Gaps = 17/251 (6%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L          +  L L +++ S+G+ PD+ T N L++  C  G++     +   
Sbjct: 429 VTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 488

Query: 168 ILRS-----------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           + +S              PD + +  LI GL  E + +EA  L+ ++   G  P+ ITYS
Sbjct: 489 MQKSKMDLDASHPFNGVEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYS 548

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++I+GLC+      A  +F  M  G+  F     PN VT+ T+I+G CK G VD   ELF
Sbjct: 549 SMIDGLCKQSRLDEATQMFVSM--GSKSF----SPNVVTFNTLINGYCKAGRVDDGLELF 602

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  + I  D + Y +LI+GF    + N A  +  EM+  GV PD +T   ++      
Sbjct: 603 CEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGFWSK 662

Query: 337 GKMDEASRLLE 347
            +++ A  +LE
Sbjct: 663 EELERAVAMLE 673



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/228 (29%), Positives = 109/228 (47%), Gaps = 18/228 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----------GLFPDLYTYNILINCFC 153
           P + + N L   L         L +FK +  +           G+ PD+ TYNILI    
Sbjct: 461 PDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNILICGLI 520

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+      +   +      PD + ++S+I GLC +SR+ EA  +F  + +    PNV+
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFVSMGSKSFSPNVV 580

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++TLING C+ G     L LF EM    G+ G+V   + + Y T+I G  K G ++ A 
Sbjct: 581 TFNTLINGYCKAGRVDDGLELFCEM----GRRGIVA--DAIIYITLIYGFRKVGNINGAL 634

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQ 320
           ++F +M    + PD +T  +++ GF    +   A  +L ++ M  G Q
Sbjct: 635 DIFQEMISSGVYPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVGYQ 682



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 70/155 (45%), Gaps = 1/155 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+N L
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFVSMGSKSFSPNVVTFNTL 585

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     DA+ + +LI G      I  A  +F ++ + G 
Sbjct: 586 INGYCKAGRVDDGLELFCEMGRRGIVADAIIYITLIYGFRKVGNINGALDIFQEMISSGV 645

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
            P+ IT   ++ G         A+ + E++    G
Sbjct: 646 YPDTITIRNMLTGFWSKEELERAVAMLEDLQMSVG 680


>gi|302143409|emb|CBI21970.3| unnamed protein product [Vitis vinifera]
          Length = 375

 Score =  236 bits (601), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/332 (38%), Positives = 189/332 (56%), Gaps = 33/332 (9%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ML MRP PP +  F+ L   + + KHY TVLSL+K+++S G+  + YT NILIN FC + 
Sbjct: 1   MLRMRP-PPSIVDFSKLLTSITRMKHYSTVLSLYKQMDSFGIPHNTYTLNILINSFCHLN 59

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R+   F VLG IL+  + P    FT+LI+GLC E +I EA  LF K+   G +P+V+TY 
Sbjct: 60  RLGFAFSVLGDILKLGYQPSTATFTTLIRGLCVEGKIGEALQLFDKMTGEGFQPDVLTYG 119

Query: 217 TLINGLCRTGHTIVALNLFEEMAN--------------------GNGK------FGVVCK 250
           TLINGLC+      AL+LF +M                      G+ K      + ++ +
Sbjct: 120 TLINGLCKDRQLTEALSLFSDMLAKGISPNNFTYSSLIHGLCILGHWKEAIRLFYAMIHR 179

Query: 251 ---PNTVTYTTIIDGLCKEGFV---DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
              P+ +T+ T++D LCKEG +   DKA  LF +M  + + PD VTYN+LIHG C+    
Sbjct: 180 KIMPDQLTFNTLVDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRL 239

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            +A  L  EM+  G  PD+VT+ ++ D LCKN ++ EA  LL+++    ++P+   +S +
Sbjct: 240 RDAIALFHEMVVYGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTNLDPDIHIYSIV 299

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           MDG C  G +  A++LF  + S G    V +Y
Sbjct: 300 MDGMCRAGELEAARDLFSKLSSKGLHPDVRTY 331



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 118/235 (50%), Gaps = 10/235 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  ML    SP   T  +L+ G L    H+   + LF  +    + PD  T+N L
Sbjct: 133 EALSLFSDMLAKGISPNNFTYSSLIHG-LCILGHWKEAIRLFYAMIHRKIMPDQLTFNTL 191

Query: 149 INCFCKMGRVSHGFVVLG---RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           ++  CK G +      +G    + +    PD V + +LI GLC   R+ +A ALF ++  
Sbjct: 192 VDALCKEGMIQIMDKAMGLFEEMSQQGLIPDTVTYNTLIHGLCHVGRLRDAIALFHEMVV 251

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           +G  P+++TY  L + LC+      A+ L + +   N        P+   Y+ ++DG+C+
Sbjct: 252 YGQIPDLVTYRILFDYLCKNHRLAEAMVLLKVIEGTN------LDPDIHIYSIVMDGMCR 305

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G ++ A++LF ++  K ++PDV TY  +I+G C      EA+ L  EM +  ++
Sbjct: 306 AGELEAARDLFSKLSSKGLHPDVRTYTIMINGLCQQGLLAEASKLFGEMDENDIE 360


>gi|297835244|ref|XP_002885504.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331344|gb|EFH61763.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 618

 Score =  235 bits (600), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 197/361 (54%), Gaps = 46/361 (12%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           KER ++     I  I  NEA  +F+ M+  RP  P L  F+ LF  +A+ K YD VL   
Sbjct: 38  KERLRNG----IVDIKVNEAIDLFESMIQSRP-LPSLIDFSKLFSAVARRKEYDLVLGFC 92

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K ++  G+  ++YT NI+INCFC+  ++   F V+GR L+  F P+ + F++LI G C E
Sbjct: 93  KEMDLNGIEHNMYTMNIMINCFCRKRKLLFAFSVVGRALKFGFEPNTITFSTLINGFCLE 152

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGL---------------------------- 222
            R+ EA AL  ++     +PNV+T +TLINGL                            
Sbjct: 153 GRVSEAVALVDRMVEMKYRPNVVTVNTLINGLCLKGRVTEALVLIDRMVKYGCEANEITY 212

Query: 223 -------CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
                  C++G+T +AL+LF +M   +       K + V Y+ +ID LCK+G +D A  L
Sbjct: 213 GPVLNRMCKSGNTALALDLFRKMEERS------IKASVVQYSIVIDSLCKDGNLDDALSL 266

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +M+ K I  DVV Y+S+I G C    W++   +L EM+ + + P+VVTF+ ++D   K
Sbjct: 267 FNEMEMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSALIDVFVK 326

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA  L   M+ RG+ P+T T+S+L+DGFC   R+  A ++   M S GC+  + +
Sbjct: 327 EGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKGCEPNIVT 386

Query: 396 Y 396
           Y
Sbjct: 387 Y 387



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 151/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R     +  ++++   L K  + D  LSLF  +   G+  D+  Y+ +I   C  GR   
Sbjct: 238 RSIKASVVQYSIVIDSLCKDGNLDDALSLFNEMEMKGIKADVVAYSSIIGGLCNDGRWDD 297

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +L  ++     P+ V F++LI     E +++EA  L+ ++ A G  P+ ITYS+LI+
Sbjct: 298 GAKMLREMIGRNIIPNVVTFSALIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLID 357

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+      A  + + M +        C+PN VTY+ +I+  CK   VD    LF ++ 
Sbjct: 358 GFCKENRLGEANQMLDLMVSKG------CEPNIVTYSILINSYCKAKRVDNGMRLFCEIS 411

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K +  D VTYN+L+ GFC +   N A  L  EM+ +GV P VVT+ +++D LC NG++ 
Sbjct: 412 SKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQ 471

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  + E M    +      ++ ++ G C   +V+ A  LF S+   G K  V +Y
Sbjct: 472 KALEIFEKMQKSRMILGIGIYNIIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTY 527



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ M  M+     + +++ + G L     +D    + + +    + P++ T++ 
Sbjct: 261 DDALSLFNEM-EMKGIKADVVAYSSIIGGLCNDGRWDDGAKMLREMIGRNIIPNVVTFSA 319

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   ++     PD + ++SLI G C E+R+ EA  +   + + G
Sbjct: 320 LIDVFVKEGKLLEAKELYNEMVARGIAPDTITYSSLIDGFCKENRLGEANQMLDLMVSKG 379

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PN++TYS LIN  C+       + LF E+++     G+V   +TVTY T++ G C+ G
Sbjct: 380 CEPNIVTYSILINSYCKAKRVDNGMRLFCEISSK----GLV--ADTVTYNTLVQGFCQSG 433

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + P VVTY  L+ G C   +  +A  +  +M    +   +  +N
Sbjct: 434 KLNVAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYN 493

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   + ++GV P+  T++ ++ G C  G ++ A  LF  M+  
Sbjct: 494 IIIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKED 553

Query: 388 GCKHTVFSY 396
           GC  +  +Y
Sbjct: 554 GCAPSDCTY 562



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/277 (29%), Positives = 134/277 (48%), Gaps = 7/277 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M+    +P  +T  +L+ G   K         +   + S G  P++ TY+IL
Sbjct: 332 EAKELYNEMVARGIAPDTITYSSLIDG-FCKENRLGEANQMLDLMVSKGCEPNIVTYSIL 390

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  RV +G  +   I       D V + +L++G C   ++  A  LF ++ + G 
Sbjct: 391 INSYCKAKRVDNGMRLFCEISSKGLVADTVTYNTLVQGFCQSGKLNVAKELFQEMVSRGV 450

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TY  L++GLC  G    AL +FE+M       G+        Y  II G+C    
Sbjct: 451 PPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIG------IYNIIIHGMCNASK 504

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  LF  +  K + PDV+TYN +I G C     +EA+ L  +M + G  P   T+N+
Sbjct: 505 VDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDGCAPSDCTYNI 564

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           ++        +  +  L+E M +RG   + ST   ++
Sbjct: 565 LIRAHLGGSGVISSVELIEEMKMRGFAADASTIKMVV 601



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 7/185 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F  M++ R  PP + ++ +L   L         L +F+++  + +   +  YNI
Sbjct: 436 NVAKELFQEMVS-RGVPPSVVTYGILLDGLCDNGELQKALEIFEKMQKSRMILGIGIYNI 494

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  C   +V   + +   +      PD + +  +I GLC +  + EA  LF K+K  G
Sbjct: 495 IIHGMCNASKVDDAWSLFCSLSVKGVKPDVLTYNVMIGGLCKKGSLSEADMLFRKMKEDG 554

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII--DGLCK 265
           C P+  TY+ LI         I ++ L EEM       G     +T+    ++  DG   
Sbjct: 555 CAPSDCTYNILIRAHLGGSGVISSVELIEEMK----MRGFAADASTIKMVVVMLSDGRLD 610

Query: 266 EGFVD 270
           + F+D
Sbjct: 611 KTFLD 615


>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
          Length = 1512

 Score =  235 bits (600), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/393 (37%), Positives = 218/393 (55%), Gaps = 45/393 (11%)

Query: 36   SSISKNEPSDPTTTAKLKESLRLTVKDRASL---EQFLKERCKSSGQGDITAITPNEAFC 92
            SS+ KN P    + +K ++     +  +ASL   E++++++C+         I  N+A  
Sbjct: 884  SSLFKNPPQRSGSNSKSEK-----IGTKASLSPFERYVRDQCR------FGIIKLNDAIK 932

Query: 93   IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
            +FD  L   P P   T FN L   +AK  +Y TV  +++++N  G+ PDLYT NILI+C 
Sbjct: 933  LFDRSLCSEPMPCTDT-FNHLLASVAKLGYYSTVFPMYRKINDVGIQPDLYTLNILIHCC 991

Query: 153  CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            C +  V  GF V G  L+  F PDAV  T+L+KG+  E+ I +A  LF ++   G   + 
Sbjct: 992  CSLRAVGCGFGVFGGFLKRGFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDA 1051

Query: 213  ITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK------------- 250
             TY  LINGLC+   T +A+ L E+M  GN K     +G++    CK             
Sbjct: 1052 KTYGILINGLCKARKTGLAIKLHEKM-KGNCKGDVFTYGMIIDALCKDGMTTEALDMFSE 1110

Query: 251  -------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                   P+ V Y++++DGLC+ G + +A E F +M+ + I+ DV TYNSLIHG   A  
Sbjct: 1111 MIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGL 1170

Query: 304  WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            W E    L  M+D+G  PD  TF +++D LCK GK+ EA ++LELM  +G  P+  T++T
Sbjct: 1171 WKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPDILTYNT 1230

Query: 364  LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM+G CL G++  A +LF S+   G K  VFSY
Sbjct: 1231 LMNGLCLVGQLEDATKLFESLADRGIKLNVFSY 1263



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 92/285 (32%), Positives = 160/285 (56%), Gaps = 17/285 (5%)

Query: 109  SFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
            ++ +L   L K +     + L +++  N  G   D++TY ++I+  CK G  +    +  
Sbjct: 1053 TYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTYGMIIDALCKDGMTTEALDMFS 1109

Query: 167  RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
             ++ +   PD V ++SL+ GLC   R+ EA   F +++  G   +V TY++LI+GL R G
Sbjct: 1110 EMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG 1169

Query: 227  ---HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                    LNL  +             P+  T+T +IDGLCKEG V +A+++   M+ K 
Sbjct: 1170 LWKEVTWFLNLMVDRG---------FSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKG 1220

Query: 284  INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              PD++TYN+L++G C      +A  L   + D+G++ +V ++N++++  CK+ K+DEA 
Sbjct: 1221 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 1280

Query: 344  RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            R  E M  +G+ P+T T++TL+   C +GRV  A++LFV M++ G
Sbjct: 1281 RFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 1325



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            EA  +F  M+     P  +   +L+ G L +       L  FK +   G+  D+YTYN L
Sbjct: 1103 EALDMFSEMIGAGILPDVVVYSSLMDG-LCRFGRLKEALEFFKEMEGRGISADVYTYNSL 1161

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            I+   + G        L  ++   F+PDA  FT LI GLC E ++ EA  +   ++  G 
Sbjct: 1162 IHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGK 1221

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            +P+++TY+TL+NGLC  G    A  LFE +A+   K       N  +Y  +I+G CK+  
Sbjct: 1222 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKL------NVFSYNILINGYCKDQK 1275

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +D+A   F +M+ K + P  VTYN+LI   C +     A  L +EM   G    + T+ V
Sbjct: 1276 IDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCV 1335

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++D LCKNG ++EA  L + +      PN   FS L+DG C  G++  A + F  +   G
Sbjct: 1336 LLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNG 1395

Query: 389  CKHTVFSY 396
             +    +Y
Sbjct: 1396 LEPDTIAY 1403



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            EA  I + M +    P  LT +N L   L      +    LF+ L   G+  ++++YNIL
Sbjct: 1208 EAQQILELMRHKGKEPDILT-YNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 1266

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            IN +CK  ++   F     +      P  V + +LI  LC   R+  A  LF +++  G 
Sbjct: 1267 INGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 1326

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
               + TY  L++GLC+ GH   A++LF+ +     K      PN   ++ ++DG+C+ G 
Sbjct: 1327 FLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHK------PNIEVFSILLDGMCRAGK 1380

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +++A + F ++    + PD + YN LI+G C     +EA  LL +M ++G  PD +TFNV
Sbjct: 1381 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV 1440

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            I+  L K  ++ EA +LLE M  R  +P+ +  S L+
Sbjct: 1441 IIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 1477



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/277 (28%), Positives = 137/277 (49%), Gaps = 6/277 (2%)

Query: 109  SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            ++ ++   L K       L +F  +   G+ PD+  Y+ L++  C+ GR+         +
Sbjct: 1087 TYGMIIDALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEM 1146

Query: 169  LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 + D   + SLI GL       E       +   G  P+  T++ LI+GLC+ G  
Sbjct: 1147 EGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKV 1206

Query: 229  IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
              A  + E M +  GK     +P+ +TY T+++GLC  G ++ A +LF  + D+ I  +V
Sbjct: 1207 GEAQQILELMRH-KGK-----EPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNV 1260

Query: 289  VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             +YN LI+G+C     +EA     EM  +G++P  VT+N ++  LC++G++  A +L   
Sbjct: 1261 FSYNILINGYCKDQKIDEAFRFFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVE 1320

Query: 349  MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            M   G     ST+  L+DG C  G +  A +LF S++
Sbjct: 1321 MQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIK 1357



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 113/234 (48%), Gaps = 11/234 (4%)

Query: 88   NEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
            +EAF  F+    MRP    P   ++N L G L ++    T   LF  + + G F  L TY
Sbjct: 1277 DEAFRFFE---EMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTY 1333

Query: 146  NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
             +L++  CK G +     +   I ++   P+   F+ L+ G+C   ++ EA   F ++  
Sbjct: 1334 CVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 1393

Query: 206  FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
             G +P+ I Y+ LINGLC  G    A+ L  +M          C P+++T+  II  L K
Sbjct: 1394 NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKG------CLPDSITFNVIIQNLLK 1447

Query: 266  EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            E  + +A +L  +M+++N +PD    + L+    +   W+ A   L   + +GV
Sbjct: 1448 ENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 1501


>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
          Length = 648

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 196/361 (54%), Gaps = 46/361 (12%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           KER ++     I  I  N+A  +F+ M+  RP P P+  FN L   +A+TK YD VL   
Sbjct: 68  KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 122

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K +   G+  D+YT  I+INC+C+  ++   F VLGR  +  + PD + F++L+ G C E
Sbjct: 123 KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 182

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLING----------------------------- 221
            R+ EA AL  ++     +P+++T STLING                             
Sbjct: 183 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 242

Query: 222 ------LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
                 LC++G++ +AL+LF +M   N       K + V Y+ +ID LCK+G  D A  L
Sbjct: 243 GPVLNRLCKSGNSALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSL 296

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +M+ K I  DVVTY+SLI G C    W++   +L EM+ + + PDVVTF+ ++D   K
Sbjct: 297 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 356

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA  L   MI RG+ P+T T+++L+DGFC    ++ A ++F  M S GC+  + +
Sbjct: 357 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 416

Query: 396 Y 396
           Y
Sbjct: 417 Y 417



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R     +  ++++   L K   +D  LSLF  +   G+  D+ TY+ LI   C  G+   
Sbjct: 268 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 327

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +L  ++     PD V F++LI     E +++EA  L+ ++   G  P+ ITY++LI+
Sbjct: 328 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 387

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+      A  +F+ M +        C+P+ VTY+ +I+  CK   VD    LF ++ 
Sbjct: 388 GFCKENCLHEANQMFDLMVSKG------CEPDIVTYSILINSYCKAKRVDDGMRLFREIS 441

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K + P+ +TYN+L+ GFC +   N A  L  EM+ +GV P VVT+ +++D LC NG+++
Sbjct: 442 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 501

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  + E M    +      ++ ++ G C   +V+ A  LF S+   G K  V +Y
Sbjct: 502 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 557



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ M  M+     + +++ L G L     +D    + + +    + PD+ T++ 
Sbjct: 291 DDALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 349

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   ++     PD + + SLI G C E+ + EA  +F  + + G
Sbjct: 350 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 409

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+++TYS LIN  C+       + LF E+++     G++  PNT+TY T++ G C+ G
Sbjct: 410 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSK----GLI--PNTITYNTLVLGFCQSG 463

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + P VVTY  L+ G C   + N+A  +  +M    +   +  +N
Sbjct: 464 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 523

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   +  +GV P+  T++ ++ G C  G ++ A  LF  M+  
Sbjct: 524 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 583

Query: 388 GCKHTVFSY 396
           GC    F+Y
Sbjct: 584 GCTPDDFTY 592



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M+  R   P   ++N L     K         +F  + S G  PD+ TY+IL
Sbjct: 362 EAKELYNEMIT-RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 420

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  RV  G  +   I      P+ + + +L+ G C   ++  A  LF ++ + G 
Sbjct: 421 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 480

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TY  L++GLC  G    AL +FE+M       G+        Y  II G+C    
Sbjct: 481 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIG------IYNIIIHGMCNASK 534

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  LF  + DK + PDVVTYN +I G C     +EA+ L  +M + G  PD  T+N+
Sbjct: 535 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 594

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++        +  +  L+E M + G + ++ST   ++D
Sbjct: 595 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 632



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF+ M   R +   +  +N++   +      D   SLF  L+  G+ PD+ TYN+
Sbjct: 501 NKALEIFEKMQKSRMTLG-IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 559

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I   CK G +S   ++  ++     TPD   +  LI+     S ++ +  L  ++K  G
Sbjct: 560 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 619

Query: 208 CKPNVITYSTLINGL 222
              +  T   +I+ L
Sbjct: 620 FSADSSTIKMVIDML 634


>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g22470, mitochondrial; Flags: Precursor
 gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
 gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
 gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 619

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 129/361 (35%), Positives = 196/361 (54%), Gaps = 46/361 (12%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           KER ++     I  I  N+A  +F+ M+  RP P P+  FN L   +A+TK YD VL   
Sbjct: 39  KERLRNG----IVDIKVNDAIDLFESMIQSRPLPTPI-DFNRLCSAVARTKQYDLVLGFC 93

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K +   G+  D+YT  I+INC+C+  ++   F VLGR  +  + PD + F++L+ G C E
Sbjct: 94  KGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLE 153

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLING----------------------------- 221
            R+ EA AL  ++     +P+++T STLING                             
Sbjct: 154 GRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTY 213

Query: 222 ------LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
                 LC++G++ +AL+LF +M   N       K + V Y+ +ID LCK+G  D A  L
Sbjct: 214 GPVLNRLCKSGNSALALDLFRKMEERN------IKASVVQYSIVIDSLCKDGSFDDALSL 267

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +M+ K I  DVVTY+SLI G C    W++   +L EM+ + + PDVVTF+ ++D   K
Sbjct: 268 FNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVK 327

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA  L   MI RG+ P+T T+++L+DGFC    ++ A ++F  M S GC+  + +
Sbjct: 328 EGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVT 387

Query: 396 Y 396
           Y
Sbjct: 388 Y 388



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R     +  ++++   L K   +D  LSLF  +   G+  D+ TY+ LI   C  G+   
Sbjct: 239 RNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDD 298

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +L  ++     PD V F++LI     E +++EA  L+ ++   G  P+ ITY++LI+
Sbjct: 299 GAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLID 358

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+      A  +F+ M +        C+P+ VTY+ +I+  CK   VD    LF ++ 
Sbjct: 359 GFCKENCLHEANQMFDLMVSKG------CEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K + P+ +TYN+L+ GFC +   N A  L  EM+ +GV P VVT+ +++D LC NG+++
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  + E M    +      ++ ++ G C   +V+ A  LF S+   G K  V +Y
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ M  M+     + +++ L G L     +D    + + +    + PD+ T++ 
Sbjct: 262 DDALSLFNEM-EMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIGRNIIPDVVTFSA 320

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   ++     PD + + SLI G C E+ + EA  +F  + + G
Sbjct: 321 LIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKG 380

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+++TYS LIN  C+       + LF E+++     G++  PNT+TY T++ G C+ G
Sbjct: 381 CEPDIVTYSILINSYCKAKRVDDGMRLFREISSK----GLI--PNTITYNTLVLGFCQSG 434

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + P VVTY  L+ G C   + N+A  +  +M    +   +  +N
Sbjct: 435 KLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYN 494

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   +  +GV P+  T++ ++ G C  G ++ A  LF  M+  
Sbjct: 495 IIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKED 554

Query: 388 GCKHTVFSY 396
           GC    F+Y
Sbjct: 555 GCTPDDFTY 563



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M+  R   P   ++N L     K         +F  + S G  PD+ TY+IL
Sbjct: 333 EAKELYNEMIT-RGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSIL 391

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  RV  G  +   I      P+ + + +L+ G C   ++  A  LF ++ + G 
Sbjct: 392 INSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGV 451

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TY  L++GLC  G    AL +FE+M       G+        Y  II G+C    
Sbjct: 452 PPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGIG------IYNIIIHGMCNASK 505

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  LF  + DK + PDVVTYN +I G C     +EA+ L  +M + G  PD  T+N+
Sbjct: 506 VDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNI 565

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++        +  +  L+E M + G + ++ST   ++D
Sbjct: 566 LIRAHLGGSGLISSVELIEEMKVCGFSADSSTIKMVID 603



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 35/135 (25%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF+ M   R +   +  +N++   +      D   SLF  L+  G+ PD+ TYN+
Sbjct: 472 NKALEIFEKMQKSRMTLG-IGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYNV 530

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I   CK G +S   ++  ++     TPD   +  LI+     S ++ +  L  ++K  G
Sbjct: 531 MIGGLCKKGSLSEADMLFRKMKEDGCTPDDFTYNILIRAHLGGSGLISSVELIEEMKVCG 590

Query: 208 CKPNVITYSTLINGL 222
              +  T   +I+ L
Sbjct: 591 FSADSSTIKMVIDML 605


>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
 gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
 gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
 gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
 gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
 gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
          Length = 687

 Score =  235 bits (599), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 121/339 (35%), Positives = 190/339 (56%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  ML  RP  P +  F  L G + + +  D V+SL++++    +  D+Y++NI
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFNI 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++       G+I +    PD V FT+L+ GLC E R+ EA   F ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSEALDFFHQMFETT 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK-------- 250
           C+PNV+T++TL+NGLCR G  + A+ L + M     +     +G +    CK        
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        PN V Y+ IID LCK+G    A+ LF +M++K I PD+ TYNS+I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC +  W++A  LL EM+++ + PDVVT+N +++   K GK  EA  L + M+ RG+ PN
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T T+S+++DGFC   R++ A+ +F  M + GC   + ++
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 23/310 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
           R   P + ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 159 -SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++    + C +P+ + F +LI G C   RI +   L  ++   G   +  TY+T
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G    G    AL+L +EM +       +C P+ VT  T++DGLC  G +  A E+F 
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 278 QMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            M+              + PDV TYN LI G      + EA  L  EM  +G+ PD +T+
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++D LCK  ++DEA+++ + M  +  +PN  TF+TL++G+C  GRV+   ELF  M  
Sbjct: 550 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 610 RGIVANAITY 619



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA  + D M+     P  +T   ++ G + K     + L+L +++     + P++  Y+ 
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDG-MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GR S    +   +      PD   + S+I G C+  R  +A  L  ++    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ LIN   + G    A  L++EM       G++  PNT+TY+++IDG CK+ 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEML----PRGII--PNTITYSSMIDGFCKQN 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ +F  M  K  +P+++T+N+LI G+C A   ++   LL EM + G+  D  T+N
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++      G ++ A  LL+ MI  G+ P+  T  TL+DG C  G++  A E+F  M+
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 150/284 (52%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P L +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +P+VVT+ +LI+G+C A   ++   L  EM  +G+  + +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++    K G ++ A  + + MI  GV P+T T   ++ G 
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML     P  +T  +++ G   K    D    +F  + + G  P+L T+N L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  +  +    D   + +LI G      +  A  L  ++ + G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNTVTYTTIIDGL 263
            P+++T  TL++GLC  G    AL +F+ M                +P+  TY  +I GL
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  +   M  +   P+V
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF  +++  CK G++D+   L   M  RG+  N  T+ TL+ GF   G +N A ++F  
Sbjct: 582 VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 MESMG 388
           M S G
Sbjct: 642 MISSG 646



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+  L
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTL 587

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     +A+ + +LI G      I  A  +F ++ + G 
Sbjct: 588 INGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            P+ IT   ++ GL        A+ + E++
Sbjct: 648 YPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI  F K+G ++    +   ++ S   PD +   +++ GL ++  +  A A+  KL+
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|356561679|ref|XP_003549107.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12775, mitochondrial-like [Glycine max]
          Length = 750

 Score =  234 bits (597), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 127/307 (41%), Positives = 176/307 (57%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A   FD ML MRP PPP   FN +   L   KHY TV+SLFK+  S G  PDL T NIL+
Sbjct: 47  AVASFDRMLLMRP-PPPTFHFNYILSSLVNNKHYPTVISLFKKFESNGATPDLCTLNILM 105

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           NCFC +  ++  F VL  IL+  + P+A+   +LIKGLC    I +A     ++ A G +
Sbjct: 106 NCFCHLTHITFAFSVLANILKRGYHPNAITLNTLIKGLCFRGEIKKALYFHDQVVAQGFQ 165

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            N ++Y TLINGLC+TG T     L  ++       G   KP+ V Y TII  LCK   +
Sbjct: 166 LNQVSYRTLINGLCKTGETKAVARLLRKLE------GHSVKPDVVMYNTIIHSLCKNKLL 219

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A +L+ +M  K I+P+VVTYN+L++GFC      EA  LL EM  + + PDV TFN +
Sbjct: 220 GDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSLLNEMKLKNINPDVCTFNTL 279

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D L K GKM  A  +L +M+   + P+  T+++L+DG+    +V +AK +F SM   G 
Sbjct: 280 IDALGKEGKMKAAKIVLAVMMKACIKPDVVTYNSLIDGYFFLNKVKNAKYVFYSMAQSGV 339

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 340 TPNVRTY 346



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 8/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K K       L+  +   G+ P++ TYN L+  FC MG +   F +
Sbjct: 201 PDVVMYNTIIHSLCKNKLLGDACDLYSEMIVKGISPNVVTYNALVYGFCIMGHLKEAFSL 260

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLC 223
           L  +      PD   F +LI  L  E + M+AA +   +    C KP+V+TY++LI+G  
Sbjct: 261 LNEMKLKNINPDVCTFNTLIDALGKEGK-MKAAKIVLAVMMKACIKPDVVTYNSLIDGYF 319

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  A  +F  MA      GV   PN  TYTT+IDGLCKE  VD+A  LF +MK KN
Sbjct: 320 FLNKVKNAKYVFYSMAQS----GVT--PNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKN 373

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD+VTY SLI G C  +    A  L  +M +QG+QPDV ++ +++D LCK G+++ A 
Sbjct: 374 MIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLENAK 433

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
              + ++++G + N  T++ +++G C       A +L   ME  GC
Sbjct: 434 EFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKGC 479



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 169/360 (46%), Gaps = 65/360 (18%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M   +   P + ++  L   L K  H +  ++L K++   G+ PD+Y+Y I
Sbjct: 360 DEAMSLFEEM-KYKNMIPDIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTI 418

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF---------------------------------- 173
           L++  CK GR+ +      R+L   +                                  
Sbjct: 419 LLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCKADLFGEAMDLKSKMEGKG 478

Query: 174 -TPDAVAFTSLI---------------------KGL--CAESRIMEAAALFTKLKAFGCK 209
             PDA+ F ++I                     +GL    + R+ EA  +   +     K
Sbjct: 479 CMPDAITFKTIICALFEKDENDKAEKILREMIARGLQEARKVRLKEAKIVLAVMTKACIK 538

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V+TY TL++G         A  +F  MA    + GV   PN   YT +IDGLCK+  V
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYSMA----QMGVT--PNVQCYTIMIDGLCKKKTV 592

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A  LF +MK KN+ P++VTY SLI   C  +    A  LL EM + G+QPDV ++ ++
Sbjct: 593 DEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTIL 652

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK+G+++ A  + + ++++G + N   ++ +++  C  G  + A +L   ME  GC
Sbjct: 653 LDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGC 712



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 147/315 (46%), Gaps = 29/315 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L K K  D  +SLF+ +    + PD+ TY  LI+  CK   +     +
Sbjct: 341 PNVRTYTTMIDGLCKEKMVDEAMSLFEEMKYKNMIPDIVTYTSLIDGLCKNHHLERAIAL 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      PD  ++T L+  LC   R+  A   F +L   G   NV TY+ +INGLC+
Sbjct: 401 CKKMKEQGIQPDVYSYTILLDALCKGGRLENAKEFFQRLLVKGYHLNVQTYNVMINGLCK 460

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN- 283
                 A++L  +M  G G     C P+ +T+ TII  L ++   DKA+++  +M  +  
Sbjct: 461 ADLFGEAMDLKSKM-EGKG-----CMPDAITFKTIICALFEKDENDKAEKILREMIARGL 514

Query: 284 ----------------------INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
                                 I PDVVTY +L+ G+   N+   A  +   M   GV P
Sbjct: 515 QEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTP 574

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +V  + +++D LCK   +DEA  L E M  + + PN  T+++L+D  C    +  A  L 
Sbjct: 575 NVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALL 634

Query: 382 VSMESMGCKHTVFSY 396
             M+  G +  V+SY
Sbjct: 635 KEMKEHGIQPDVYSY 649



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 126/215 (58%), Gaps = 6/215 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ TY  L++ +  +  + H   V   + +   TP+   +T +I GLC +  + EA +L
Sbjct: 539 PDVVTYGTLMDGYFLVNELKHAKYVFYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSL 598

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++K     PN++TY++LI+ LC+  H   A+ L +EM     + G+  +P+  +YT +
Sbjct: 599 FEEMKHKNMFPNIVTYTSLIDALCKNHHLERAIALLKEMK----EHGI--QPDVYSYTIL 652

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +DGLCK G ++ AKE+F ++  K  + +V  Y ++I+  C A  ++EA  L  +M D+G 
Sbjct: 653 LDGLCKSGRLEGAKEIFQRLLVKGYHLNVQVYTAMINELCKAGLFDEALDLQXKMEDKGC 712

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
            PD VTF++I+  L +  + D+A ++L  MI RG+
Sbjct: 713 MPDAVTFDIIIWALFEKDENDKAEKILXEMIARGL 747



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 138/305 (45%), Gaps = 29/305 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF-------------- 152
           + ++N++   L K   +   + L  ++   G  PD  T+  +I                 
Sbjct: 448 VQTYNVMINGLCKADLFGEAMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKILR 507

Query: 153 ---------CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
                     +  R+    +VL  + ++C  PD V + +L+ G    + +  A  +F  +
Sbjct: 508 EMIARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNELKHAKYVFYSM 567

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G  PNV  Y+ +I+GLC+      A++LFEEM + N        PN VTYT++ID L
Sbjct: 568 AQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKN------MFPNIVTYTSLIDAL 621

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK   +++A  L  +MK+  I PDV +Y  L+ G C +     A  +   ++ +G   +V
Sbjct: 622 CKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLLVKGYHLNV 681

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +  +++ELCK G  DEA  L   M  +G  P+  TF  ++         + A+++   
Sbjct: 682 QVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALFEKDENDKAEKILXE 741

Query: 384 MESMG 388
           M + G
Sbjct: 742 MIARG 746



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 125/263 (47%), Gaps = 14/263 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAK 119
           D+A  E+ L+E   + G  +   +   EA  +   M      P  +T   L+ G   + +
Sbjct: 500 DKA--EKILREMI-ARGLQEARKVRLKEAKIVLAVMTKACIKPDVVTYGTLMDGYFLVNE 556

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
            KH   V   F  +   G+ P++  Y I+I+  CK   V     +   +      P+ V 
Sbjct: 557 LKHAKYV---FYSMAQMGVTPNVQCYTIMIDGLCKKKTVDEAMSLFEEMKHKNMFPNIVT 613

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +TSLI  LC    +  A AL  ++K  G +P+V +Y+ L++GLC++G    A  +F+ + 
Sbjct: 614 YTSLIDALCKNHHLERAIALLKEMKEHGIQPDVYSYTILLDGLCKSGRLEGAKEIFQRLL 673

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                       N   YT +I+ LCK G  D+A +L  +M+DK   PD VT++ +I    
Sbjct: 674 VKGYHL------NVQVYTAMINELCKAGLFDEALDLQXKMEDKGCMPDAVTFDIIIWALF 727

Query: 300 YANDWNEANCLLIEMMDQGVQPD 322
             ++ ++A  +L EM+ +G+  +
Sbjct: 728 EKDENDKAEKILXEMIARGLMKE 750


>gi|357442837|ref|XP_003591696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480744|gb|AES61947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  234 bits (597), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/297 (39%), Positives = 179/297 (60%), Gaps = 7/297 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  ML + P+P  +  F  +   L K KHY TV+SLF +L   G+ P++ + +ILINC+C
Sbjct: 59  FHRMLLLNPAPS-VIEFGKILSSLVKLKHYPTVISLFYQLEFNGIKPNIVSLSILINCYC 117

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
            +G++   F +  +IL+  + P+ +  T+L+KG C   ++ EA      + A G   N +
Sbjct: 118 HLGQMRFAFSIFAKILKMGYHPNTITLTTLVKGFCLNHKVKEALHFHDHVLALGFHFNQV 177

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TLINGLC+ G T  AL +  ++       G +   + V Y+TIIDGLCK+  V+ A 
Sbjct: 178 SYGTLINGLCKIGETRAALQMLRQIE------GKLVSTDVVMYSTIIDGLCKDKLVNDAY 231

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           EL+ +M  K I+P VVT NSLI+G+C    + EA  LL EM+ + + PDV TFN+++D L
Sbjct: 232 ELYSEMITKRISPTVVTLNSLIYGYCIVGQFKEAFGLLREMVLKNINPDVYTFNILVDAL 291

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           CK GK+ EA   + +M+  GV P+  T+S+LMDG+CL   VN AK ++  + +  CK
Sbjct: 292 CKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHVYSIVINGFCK 348



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 167/306 (54%), Gaps = 30/306 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           N+A+ ++  M+  R SP  +T  +L++G C+     +     L + +    + PD+YT+N
Sbjct: 228 NDAYELYSEMITKRISPTVVTLNSLIYGYCIVG--QFKEAFGLLREMVLKNINPDVYTFN 285

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           IL++  CK G++      +  +++    PD V ++SL+ G C  + + +A  +       
Sbjct: 286 ILVDALCKEGKIKEAKSGIAVMMKEGVMPDVVTYSSLMDGYCLVNEVNKAKHV------- 338

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGL 263
                   YS +ING C+      AL+LF EM          C+   P+TVTY ++IDGL
Sbjct: 339 --------YSIVINGFCKIKMVDKALSLFYEMR---------CRRIAPDTVTYNSLIDGL 381

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +  A EL  +M+D     D++TYNSLI   C  +  ++A  L+ ++ DQG+Q D+
Sbjct: 382 CKSGRISYAWELVDEMRDSGQPADIITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDM 441

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+N+++D LCK G++ +A  + + ++++G N    T++ +++G CL G +N A+ L   
Sbjct: 442 YTYNILIDGLCKQGRLKDAQVIFQDLLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSK 501

Query: 384 MESMGC 389
           ME  GC
Sbjct: 502 MEDNGC 507



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 10/191 (5%)

Query: 57  RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFC-------IFDYMLNMRPS--PPPL 107
           ++ + D+A L  F + RC+      +T  +  +  C        ++ +  MR S  P  +
Sbjct: 348 KIKMVDKA-LSLFYEMRCRRIAPDTVTYNSLIDGLCKSGRISYAWELVDEMRDSGQPADI 406

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L   L K  H D  ++L K++   G+  D+YTYNILI+  CK GR+    V+   
Sbjct: 407 ITYNSLIDALCKNHHVDKAIALVKKIKDQGIQLDMYTYNILIDGLCKQGRLKDAQVIFQD 466

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L   +      +T +I GLC E  + EA  L +K++  GC P+ +T  T+I  L     
Sbjct: 467 LLIKGYNLTVWTYTIMINGLCLEGLLNEAETLLSKMEDNGCVPDAVTCETIIRALFENDK 526

Query: 228 TIVALNLFEEM 238
              A  L  EM
Sbjct: 527 NERAEKLLREM 537


>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 559

 Score =  233 bits (595), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 180/303 (59%), Gaps = 6/303 (1%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+ +L+ +   P +  F  + G L K+ HY TV+SL +++   G+  DL   +ILINCF 
Sbjct: 59  FNRLLHQKNPKPSIFQFGKILGSLVKSNHYSTVVSLHRQMEFNGITSDLVILSILINCFS 118

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           ++G+    F VL +IL+  + P+ +  T+LIKGLC + +I +A     K+ A G   N +
Sbjct: 119 QLGQNPLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHDKVVALGFHLNKV 178

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TLINGLC+ G T  AL L   +       G + +PN V Y TIID +CK   V++A 
Sbjct: 179 SYGTLINGLCKVGQTSAALQLLRRVD------GKLVQPNVVMYNTIIDSMCKVKLVNEAF 232

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L+ +M  K I+PDVVTYN+LI GFC      +A  L  +M+ + + P+V TFN+++D  
Sbjct: 233 DLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGF 292

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK  ++ EA  +L +M+ +G+ P+  T+++LMD +CL   VN AK +F ++   G    +
Sbjct: 293 CKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNI 352

Query: 394 FSY 396
            SY
Sbjct: 353 HSY 355



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF ++  M++   SP  +T   L+ G     K  D    LF ++    + P++YT+NI
Sbjct: 229 NEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDAT-DLFNKMIFENINPNVYTFNI 287

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK  R+     VL  +++    PD   + SL+   C    + +A  +F  +   G
Sbjct: 288 LVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRG 347

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ +YS +I+G C+      A+NLF+EM   N        P+ VTY ++IDGLCK G
Sbjct: 348 VNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNN------IIPDVVTYNSLIDGLCKLG 401

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +L  +M D+ +  D +TYNS++   C  +  ++A  LL +M D+G+QPD+ T+ 
Sbjct: 402 KISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYT 461

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCKNG++++A  + E ++++G   + + ++ ++ GFC  G  + + +L   ME  
Sbjct: 462 TLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEEN 521

Query: 388 GCKHTVFSY 396
           GC     +Y
Sbjct: 522 GCIPNAVTY 530



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 152/277 (54%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   + K K  +    L+  + S G+ PD+ TYN LI+ FC +G++     +
Sbjct: 210 PNVVMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYNALISGFCIVGKMKDATDL 269

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+   F  L+ G C E R+ EA  +   +   G KP+V TY++L++  C 
Sbjct: 270 FNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVLAMMMKQGIKPDVFTYNSLMDRYCL 329

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  ++    + GV   PN  +Y+ +I G CK   VD+A  LF +M   NI
Sbjct: 330 VKEVNKAKHIFNTIS----QRGV--NPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNI 383

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYNSLI G C     + A  L+ EM D+GV  D +T+N I+D LCKN ++D+A  
Sbjct: 384 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIA 443

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LL  M   G+ P+  T++TL+DG C  GR+  A+ +F
Sbjct: 444 LLTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVF 480



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/138 (28%), Positives = 65/138 (47%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P    ++N +   L K    D  ++L  ++   G+ PD+ TY  L++  CK GR+  
Sbjct: 416 RGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDICTYTTLVDGLCKNGRLED 475

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             +V   +L   +  D   +T++I+G C+     E+  L +K++  GC PN +TY  +I 
Sbjct: 476 ARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDLLSKMEENGCIPNAVTYEIIIC 535

Query: 221 GLCRTGHTIVALNLFEEM 238
            L        A  L  EM
Sbjct: 536 SLFDKDENDKAEKLLREM 553


>gi|8778650|gb|AAF79658.1|AC025416_32 F5O11.4 [Arabidopsis thaliana]
          Length = 975

 Score =  233 bits (595), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 46/361 (12%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S G  DI A   ++A  +F  M++ RP P  +  F+ LF  +AKTK YD VL+L 
Sbjct: 155 RERLRS-GLVDIKA---DDAIDLFRDMIHSRPLPT-VIDFSRLFSAIAKTKQYDLVLALC 209

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K++   G+  +LYT +I+INCFC+  ++   F  +G+I++  + P+ + F++LI GLC E
Sbjct: 210 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 269

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            R+ EA  L  ++   G KP++IT +TL+NGLC +G    A+ L ++M     ++G  C+
Sbjct: 270 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 323

Query: 251 PNTVT-----------------------------------YTTIIDGLCKEGFVDKAKEL 275
           PN VT                                   Y+ IIDGLCK G +D A  L
Sbjct: 324 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 383

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +M+ K I  +++TYN LI GFC A  W++   LL +M+ + + P+VVTF+V++D   K
Sbjct: 384 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 443

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA  L + MI RG+ P+T T+++L+DGFC    ++ A ++   M S GC   + +
Sbjct: 444 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 503

Query: 396 Y 396
           +
Sbjct: 504 F 504



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             ++++   L K    D   +LF  +   G+  ++ TYNILI  FC  GR   G  +L  
Sbjct: 362 VKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRD 421

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +++    P+ V F+ LI     E ++ EA  L  ++   G  P+ ITY++LI+G C+  H
Sbjct: 422 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENH 481

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  + + M +        C PN  T+  +I+G CK   +D   ELF +M  + +  D
Sbjct: 482 LDKANQMVDLMVSKG------CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 535

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTYN+LI GFC     N A  L  EM+ + V P++VT+ +++D LC NG+ ++A  + E
Sbjct: 536 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 595

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +    +  +   ++ ++ G C   +V+ A +LF S+   G K  V +Y
Sbjct: 596 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 644



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F+ M  M+     + ++N+L G       +D    L + +    + P++ T+++
Sbjct: 378 DNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 436

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   ++     PD + +TSLI G C E+ + +A  +   + + G
Sbjct: 437 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 496

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ LING C+       L LF +M+      GVV   +TVTY T+I G C+ G
Sbjct: 497 CDPNIRTFNILINGYCKANRIDDGLELFRKMS----LRGVVA--DTVTYNTLIQGFCELG 550

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + P++VTY  L+ G C   +  +A  +  ++    ++ D+  +N
Sbjct: 551 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYN 610

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   + L+GV P   T++ ++ G C  G ++ A+ LF  ME  
Sbjct: 611 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 670

Query: 388 GCKHTVFSY 396
           G     ++Y
Sbjct: 671 GHAPDGWTY 679



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 150/297 (50%), Gaps = 7/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+     P  +T +  +   + K+      + L +++    +  D   Y+I+
Sbjct: 309 EAMLLIDKMVEYGCQPNAVT-YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 367

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G + + F +   +     T + + +  LI G C   R  + A L   +     
Sbjct: 368 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 427

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+T+S LI+   + G    A  L +EM +     G+   P+T+TYT++IDG CKE  
Sbjct: 428 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR----GIA--PDTITYTSLIDGFCKENH 481

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +DKA ++   M  K  +P++ T+N LI+G+C AN  ++   L  +M  +GV  D VT+N 
Sbjct: 482 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 541

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++   C+ GK++ A  L + M+ R V PN  T+  L+DG C  G    A E+F  +E
Sbjct: 542 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 598



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F++L     K         L K +   G+ PD  TY  LI+ FCK   +  
Sbjct: 425 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 484

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  ++     P+   F  LI G C  +RI +   LF K+   G   + +TY+TLI 
Sbjct: 485 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 544

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G   VA  LF+EM +          PN VTY  ++DGLC  G  +KA E+F +++
Sbjct: 545 GFCELGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEIFEKIE 598

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  D+  YN +IHG C A+  ++A  L   +  +GV+P V T+N+++  LCK G + 
Sbjct: 599 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS 658

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA  L   M   G  P+  T++ L+      G    + +L   ++  G
Sbjct: 659 EAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 706



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M++   +P  +T  +L+ G   K  H D    +   + S G  P++ T+NIL
Sbjct: 449 EAEELHKEMIHRGIAPDTITYTSLIDG-FCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 507

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  R+  G  +  ++       D V + +LI+G C   ++  A  LF ++ +   
Sbjct: 508 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 567

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY  L++GLC  G +  AL +FE++     +  +        Y  II G+C    
Sbjct: 568 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG------IYNIIIHGMCNASK 621

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +LF  +  K + P V TYN +I G C     +EA  L  +M + G  PD  T+N+
Sbjct: 622 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNI 681

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++     +G   ++ +L+E +   G + + ST   ++D
Sbjct: 682 LIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 719


>gi|15221282|ref|NP_172694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242333|sp|Q0WKV3.1|PPR36_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g12300, mitochondrial; Flags: Precursor
 gi|110741411|dbj|BAF02254.1| hypothetical protein [Arabidopsis thaliana]
 gi|332190743|gb|AEE28864.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 637

 Score =  233 bits (594), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 131/361 (36%), Positives = 206/361 (57%), Gaps = 46/361 (12%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S G  DI A   ++A  +F  M++ RP  P +  F+ LF  +AKTK YD VL+L 
Sbjct: 57  RERLRS-GLVDIKA---DDAIDLFRDMIHSRP-LPTVIDFSRLFSAIAKTKQYDLVLALC 111

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K++   G+  +LYT +I+INCFC+  ++   F  +G+I++  + P+ + F++LI GLC E
Sbjct: 112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            R+ EA  L  ++   G KP++IT +TL+NGLC +G    A+ L ++M     ++G  C+
Sbjct: 172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMV----EYG--CQ 225

Query: 251 PNTVT-----------------------------------YTTIIDGLCKEGFVDKAKEL 275
           PN VT                                   Y+ IIDGLCK G +D A  L
Sbjct: 226 PNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNL 285

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F +M+ K I  +++TYN LI GFC A  W++   LL +M+ + + P+VVTF+V++D   K
Sbjct: 286 FNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVK 345

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            GK+ EA  L + MI RG+ P+T T+++L+DGFC    ++ A ++   M S GC   + +
Sbjct: 346 EGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRT 405

Query: 396 Y 396
           +
Sbjct: 406 F 406



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 148/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             ++++   L K    D   +LF  +   G+  ++ TYNILI  FC  GR   G  +L  
Sbjct: 264 VKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRD 323

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +++    P+ V F+ LI     E ++ EA  L  ++   G  P+ ITY++LI+G C+  H
Sbjct: 324 MIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENH 383

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  + + M +        C PN  T+  +I+G CK   +D   ELF +M  + +  D
Sbjct: 384 LDKANQMVDLMVSKG------CDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVAD 437

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTYN+LI GFC     N A  L  EM+ + V P++VT+ +++D LC NG+ ++A  + E
Sbjct: 438 TVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFE 497

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +    +  +   ++ ++ G C   +V+ A +LF S+   G K  V +Y
Sbjct: 498 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTY 546



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F+ M  M+     + ++N+L G       +D    L + +    + P++ T+++
Sbjct: 280 DNAFNLFNEM-EMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSV 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   ++     PD + +TSLI G C E+ + +A  +   + + G
Sbjct: 339 LIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKG 398

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ LING C+       L LF +M+      GVV   +TVTY T+I G C+ G
Sbjct: 399 CDPNIRTFNILINGYCKANRIDDGLELFRKMS----LRGVV--ADTVTYNTLIQGFCELG 452

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + P++VTY  L+ G C   +  +A  +  ++    ++ D+  +N
Sbjct: 453 KLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYN 512

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   + L+GV P   T++ ++ G C  G ++ A+ LF  ME  
Sbjct: 513 IIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEED 572

Query: 388 GCKHTVFSY 396
           G     ++Y
Sbjct: 573 GHAPDGWTY 581



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 150/297 (50%), Gaps = 7/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+     P  +T +  +   + K+      + L +++    +  D   Y+I+
Sbjct: 211 EAMLLIDKMVEYGCQPNAVT-YGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSII 269

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G + + F +   +     T + + +  LI G C   R  + A L   +     
Sbjct: 270 IDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKI 329

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+T+S LI+   + G    A  L +EM +     G+   P+T+TYT++IDG CKE  
Sbjct: 330 NPNVVTFSVLIDSFVKEGKLREAEELHKEMIHR----GIA--PDTITYTSLIDGFCKENH 383

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +DKA ++   M  K  +P++ T+N LI+G+C AN  ++   L  +M  +GV  D VT+N 
Sbjct: 384 LDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNT 443

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++   C+ GK++ A  L + M+ R V PN  T+  L+DG C  G    A E+F  +E
Sbjct: 444 LIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F++L     K         L K +   G+ PD  TY  LI+ FCK   +  
Sbjct: 327 RKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDK 386

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  ++     P+   F  LI G C  +RI +   LF K+   G   + +TY+TLI 
Sbjct: 387 ANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQ 446

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G   VA  LF+EM +          PN VTY  ++DGLC  G  +KA E+F +++
Sbjct: 447 GFCELGKLNVAKELFQEMVSRK------VPPNIVTYKILLDGLCDNGESEKALEIFEKIE 500

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  D+  YN +IHG C A+  ++A  L   +  +GV+P V T+N+++  LCK G + 
Sbjct: 501 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLS 560

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA  L   M   G  P+  T++ L+      G    + +L   ++  G
Sbjct: 561 EAELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCG 608



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 137/278 (49%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M++   +P  +T  +L+ G   K  H D    +   + S G  P++ T+NIL
Sbjct: 351 EAEELHKEMIHRGIAPDTITYTSLIDG-FCKENHLDKANQMVDLMVSKGCDPNIRTFNIL 409

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  R+  G  +  ++       D V + +LI+G C   ++  A  LF ++ +   
Sbjct: 410 INGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKV 469

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY  L++GLC  G +  AL +FE++     +  +        Y  II G+C    
Sbjct: 470 PPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIG------IYNIIIHGMCNASK 523

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +LF  +  K + P V TYN +I G C     +EA  L  +M + G  PD  T+N+
Sbjct: 524 VDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEEDGHAPDGWTYNI 583

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++     +G   ++ +L+E +   G + + ST   ++D
Sbjct: 584 LIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621


>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 189/339 (55%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  ML  RP  P +  F  L G + + +  D V+SL++++    +  D+Y++ I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++       G+I +    PD V F +L+ GLC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK-------- 250
           C+PNV+T++TL+NGLCR G  + A+ L + M     +     +G +    CK        
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDTVSAL 239

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        PN V Y+ IID LCK+G    A+ LF +M++K I PD+ TYNS+I G
Sbjct: 240 DLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC +  W++A  LL EM+++ + PDVVT+N +++   K GK  EA  L + M+ RG+ PN
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T T+S+++DGFC   R++ A+ +F  M + GC   + ++
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 158/310 (50%), Gaps = 23/310 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
           R   P + ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 159 -SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++    + C +P+ + F +LI G C   RI +   L  ++   G   +  TY+T
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF- 276
           LI+G    G    AL+L +EM +       +C P+ VT  T++DGLC  G +  A E+F 
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 277 -LQMKDKNIN---------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            +Q   K+++         PDV TYN LI G      + EA  L  EM  +G+ PD +T+
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++D LCK  ++DEA+++ + M  +  +PN  TF+TL++G+C  GRV+   ELF  M  
Sbjct: 550 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 610 RGIVANAITY 619



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 65/345 (18%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           SF +L  C          LS F ++   GL PD+ T+N L++  C   RVS    +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG---------------CK---- 209
             +   P+ V FT+L+ GLC E RI+EA AL  ++   G               CK    
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKIGDT 235

Query: 210 -----------------PNVITYSTLINGLCRTGHTIVALNLFEEMAN------------ 240
                            PNV+ YS +I+ LC+ G    A NLF EM              
Sbjct: 236 VSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 241 ------GNGKFGVV-----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  +G++                P+ VTY  +I+   KEG   +A+EL+ +M  + 
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ +TY+S+I GFC  N  + A  +   M  +G  P+++TFN ++D  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            LL  M   G+  +T+T++TL+ GF L G +N A +L   M S G
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS-TGLFPDLYTYNI 147
           EA  + D M+     P  +T   ++ G + K     + L L +++   + + P++  Y+ 
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDG-MCKIGDTVSALDLLRKMEEISHIIPNVVIYSA 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GR S    +   +      PD   + S+I G C+  R  +A  L  ++    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ LIN   + G    A  L++EM       G++  PNT+TY+++IDG CK+ 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEML----PRGII--PNTITYSSMIDGFCKQN 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ +F  M  K  +P+++T+N+LI G+C A   ++   LL EM + G+  D  T+N
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++      G ++ A  LL+ MI  G+ P+  T  TL+DG C  G++  A E+F  M+
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 150/284 (52%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P L +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +P+VVT+ +LI+G+C A   ++   L  EM  +G+  + +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++    K G ++ A  + + MI  GV P+T T   ++ G 
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML     P  +T  +++ G   K    D    +F  + + G  P+L T+N L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  +  +    D   + +LI G      +  A  L  ++ + G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNTVTYTTIIDGL 263
            P+++T  TL++GLC  G    AL +F+ M                +P+  TY  +I GL
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  +   M  +   P+V
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF  +++  CK G++D+   L   M  RG+  N  T+ TL+ GF   G +N A ++F  
Sbjct: 582 VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 MESMG 388
           M S G
Sbjct: 642 MISSG 646



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+  L
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTL 587

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     +A+ + +LI G      I  A  +F ++ + G 
Sbjct: 588 INGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            P+ IT   ++ GL        A+ + E++
Sbjct: 648 YPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI  F K+G ++    +   ++ S   PD +   +++ GL ++  +  A A+  KL+
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|357499049|ref|XP_003619813.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494828|gb|AES76031.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 614

 Score =  233 bits (593), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 123/309 (39%), Positives = 183/309 (59%), Gaps = 6/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+++L+MR    P+  FN +   L K  H+ T +S  K++    + PDL+T+NI
Sbjct: 45  DDAVSSFNHILHMRNPVQPIFEFNKILSSLVKLNHFHTAISFSKQMELKQIQPDLFTFNI 104

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +G ++  F VL +I +  F PD V  T+LIKGLC   ++ EA      + A G
Sbjct: 105 LINCFCHLGHLNFAFSVLAKIFKLGFHPDTVTITTLIKGLCLNGKVREALHFHDDVIAKG 164

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + ++Y TLINGLC+TG T  AL +  ++       G++ +PN V Y TIID LCK+ 
Sbjct: 165 FHLDQVSYGTLINGLCKTGETRAALQVLRKID------GLLVQPNVVMYNTIIDSLCKDK 218

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A +L  +M  K I PDVVTY +LI+G        EA  L  +M+ + ++PDV TFN
Sbjct: 219 LVIHASDLCSEMIVKRIFPDVVTYTTLIYGCLIVGRLKEAVGLFNQMLLKNIKPDVYTFN 278

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G+M +A  +L +MI +GV+ N  T+++LMDG+ L  + N A  +F +M   
Sbjct: 279 ILVDGLCKEGEMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARR 338

Query: 388 GCKHTVFSY 396
           G    V SY
Sbjct: 339 GVTPDVQSY 347



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 167/300 (55%), Gaps = 7/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R  P  +T   L++GCL   +  + V  LF ++    + PD+YT+NIL++  CK G
Sbjct: 230 MIVKRIFPDVVTYTTLIYGCLIVGRLKEAV-GLFNQMLLKNIKPDVYTFNILVDGLCKEG 288

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     VL  +++     + V + SL+ G     +  +A  +F  +   G  P+V +YS
Sbjct: 289 EMKKARNVLAVMIKQGVDSNIVTYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVQSYS 348

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            +INGLC+T     A+NLF+EM + +        PNTVTY ++IDGL K G +  A +L 
Sbjct: 349 IMINGLCKTKMVDEAVNLFKEMHSKS------MAPNTVTYNSLIDGLLKYGRISDAWDLV 402

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M ++    DV+TY+SL+   C  +  ++A  L+ ++ DQG+QP++ T+ +++D LCKN
Sbjct: 403 NEMHNRGQPADVITYSSLLDALCKNHQVDKAITLITKIKDQGIQPNIYTYTILVDGLCKN 462

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++ +A  + + ++++G + +   ++ +++G C  G  + A  L   ME  GC     +Y
Sbjct: 463 GRLKDAQAVYQDLLIKGYHLDVKMYNVMVNGLCKEGLFDEALSLVSKMEDNGCIPDAVTY 522


>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
 gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
 gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
 gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
          Length = 687

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/339 (35%), Positives = 189/339 (55%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  ML  RP  P +  F  L G + + +  D V+SL++++    +  D+Y++ I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++       G+I +    PD V F +L+ GLC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK-------- 250
           C+PNV+T++TL+NGLCR G  + A+ L + M     +     +G +    CK        
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        PN V Y+ IID LCK+G    A+ LF +M++K I PD+ TYNS+I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC +  W++A  LL EM+++ + PDVVT+N +++   K GK  EA  L + M+ RG+ PN
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T T+S+++DGFC   R++ A+ +F  M + GC   + ++
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 23/310 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
           R   P + ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 159 -SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++    + C +P+ + F +LI G C   RI +   L  ++   G   +  TY+T
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G    G    AL+L +EM +       +C P+ VT  T++DGLC  G +  A E+F 
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 278 QMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            M+              + PDV TYN LI G      + EA  L  EM  +G+ PD +T+
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++D LCK  ++DEA+++ + M  +  +PN  TF+TL++G+C  GRV+   ELF  M  
Sbjct: 550 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 610 RGIVANAITY 619



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 157/345 (45%), Gaps = 65/345 (18%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           SF +L  C          LS F ++   GL PD+ T+N L++  C   RVS    +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG---------------CK---- 209
             +   P+ V FT+L+ GLC E RI+EA AL  ++   G               CK    
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 210 -----------------PNVITYSTLINGLCRTGHTIVALNLFEEMAN------------ 240
                            PNV+ YS +I+ LC+ G    A NLF EM              
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 241 ------GNGKFGVV-----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  +G++                P+ VTY  +I+   KEG   +A+EL+ +M  + 
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ +TY+S+I GFC  N  + A  +   M  +G  P+++TFN ++D  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            LL  M   G+  +T+T++TL+ GF L G +N A +L   M S G
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA  + D M+     P  +T   ++ G + K     + L+L +++     + P++  Y+ 
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDG-MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GR S    +   +      PD   + S+I G C+  R  +A  L  ++    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ LIN   + G    A  L++EM       G++  PNT+TY+++IDG CK+ 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEML----PRGII--PNTITYSSMIDGFCKQN 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ +F  M  K  +P+++T+N+LI G+C A   ++   LL EM + G+  D  T+N
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++      G ++ A  LL+ MI  G+ P+  T  TL+DG C  G++  A E+F  M+
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 150/284 (52%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P L +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +P+VVT+ +LI+G+C A   ++   L  EM  +G+  + +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++    K G ++ A  + + MI  GV P+T T   ++ G 
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML     P  +T  +++ G   K    D    +F  + + G  P+L T+N L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  +  +    D   + +LI G      +  A  L  ++ + G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNTVTYTTIIDGL 263
            P+++T  TL++GLC  G    AL +F+ M                +P+  TY  +I GL
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  +   M  +   P+V
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF  +++  CK G++D+   L   M  RG+  N  T+ TL+ GF   G +N A ++F  
Sbjct: 582 VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 MESMG 388
           M S G
Sbjct: 642 MISSG 646



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+  L
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTL 587

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     +A+ + +LI G      I  A  +F ++ + G 
Sbjct: 588 INGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            P+ IT   ++ GL        A+ + E++
Sbjct: 648 YPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI  F K+G ++    +   ++ S   PD +   +++ GL ++  +  A A+  KL+
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 582

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 180/309 (58%), Gaps = 6/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N     F+ +L+ +   PP+  FN +   L K KH+ T LSL +++   G+  D +T+NI
Sbjct: 51  NNLISSFNSLLHHKNPTPPIIQFNKILSSLVKAKHHSTALSLHQQMELNGIVSDFFTFNI 110

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCF ++G  S  F V G+IL+  F P+A+ F +LIKGLC +  I +A     K+ A G
Sbjct: 111 LINCFSQLGLNSLSFSVFGKILKKGFDPNAITFNTLIKGLCLKGHIHQALNFHDKVVAQG 170

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + ++Y TLINGLC+ G    AL L + +       G + +PN V Y  IID +CK  
Sbjct: 171 FHLDQVSYGTLINGLCKVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAK 224

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A +L+ QM  K I+PD  T NSLI+GFC      EA  LL +M+ + + P + TF+
Sbjct: 225 LVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENINPRMYTFS 284

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  CK GK+ EA  +L + + + +  +  T+++LMDG+CL   +N AK++F SM S 
Sbjct: 285 ILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASR 344

Query: 388 GCKHTVFSY 396
           G    V SY
Sbjct: 345 GVIANVQSY 353



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/306 (32%), Positives = 173/306 (56%), Gaps = 15/306 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           N+AF ++  M+  R SP   T  +L++G C+         + L  ++    + P +YT++
Sbjct: 227 NDAFDLYSQMVAKRISPDDFTCNSLIYGFCI--MGQLKEAVGLLHKMILENINPRMYTFS 284

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           IL++ FCK G+V    ++LG  ++     D V + SL+ G C    I +A  +F  + + 
Sbjct: 285 ILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLVKEINKAKDIFDSMASR 344

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGL 263
           G   NV +Y+T+INGLC+      A+NLFEEM          C+   PN VTY ++IDGL
Sbjct: 345 GVIANVQSYTTMINGLCKIKMVDEAVNLFEEMR---------CRKIIPNVVTYNSLIDGL 395

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            K G +    +L  +M D+   P+++TYNS++   C  +  ++A  LL  + DQG++PD+
Sbjct: 396 GKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDM 455

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+ V++  LC++GK+++A ++ E ++++G N +  T++ ++ GFC+ G  + A  L   
Sbjct: 456 YTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSK 515

Query: 384 MESMGC 389
           ME  GC
Sbjct: 516 MEDNGC 521



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N++   + K K  +    L+ ++ +  + PD +T N LI  FC MG++     +
Sbjct: 208 PNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGL 267

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     P    F+ L+   C E ++ EA  +           +V+TY++L++G C 
Sbjct: 268 LHKMILENINPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCL 327

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA+     GV+   N  +YTT+I+GLCK   VD+A  LF +M+ + I
Sbjct: 328 VKEINKAKDIFDSMASR----GVIA--NVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKI 381

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTYNSLI G       +    L+ EM D+G  P+++T+N I+D LCKN  +D+A  
Sbjct: 382 IPNVVTYNSLIDGLGKLGKISCVLKLVDEMHDRGQPPNIITYNSILDALCKNHHVDKAIA 441

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  +  +G+ P+  T++ L+ G C +G++  A+++F  +   G    V++Y
Sbjct: 442 LLTNLKDQGIRPDMYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTY 493



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 66/138 (47%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP + ++N +   L K  H D  ++L   L   G+ PD+YTY +LI   C+ G++  
Sbjct: 414 RGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSGKLED 473

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +L   +  D   +T +I+G C +     A AL +K++  GC PN  TY  +I 
Sbjct: 474 AQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAALALLSKMEDNGCIPNAKTYEIVIL 533

Query: 221 GLCRTGHTIVALNLFEEM 238
            L       +A  L  EM
Sbjct: 534 SLFEKDENDMAEKLLREM 551


>gi|356551942|ref|XP_003544331.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  232 bits (591), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 182/309 (58%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++M ++ P+P     FN +   L   K Y T +SL+K++  + + PD +T NI
Sbjct: 40  DDAVSQFNHMFHVHPTPHTF-HFNKILISLVNVKRYPTAISLYKQMELSEVEPDYFTLNI 98

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +INCFC  G+V   F  + +IL+  + P+ +   +L+KGLC E ++ EA     K+ A G
Sbjct: 99  IINCFCHFGQVVLAFSGVSKILKLGYQPNTITLNTLMKGLCLEGKVKEALRFHDKVLAQG 158

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + I+Y  LING+C+ G T  A+ L   +   +       +PN V Y+ IID LCK+ 
Sbjct: 159 FRLSGISYGILINGVCKIGETRAAIRLLRRIERWS------IRPNVVIYSMIIDRLCKDT 212

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A +L+ +M  K I+PDVVTY+ L+ GFC     N A  LL EM+ + + PD+ T+ 
Sbjct: 213 LVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYT 272

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  +L +M+   VN +   +STLMDG+CL   VN+AK +F +M  M
Sbjct: 273 ILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQM 332

Query: 388 GCKHTVFSY 396
           G    V  Y
Sbjct: 333 GVTPDVHCY 341



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 162/302 (53%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ ++  M+    SP  +T +++L          +  + L   +    + PD+YTY I
Sbjct: 215 DEAYDLYTEMVGKGISPDVVT-YSILVSGFCIVGQLNRAIDLLNEMVLENINPDIYTYTI 273

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G+V     VL  ++++C   D V +++L+ G C  + +  A  +F  +   G
Sbjct: 274 LVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCLVNEVNNAKRVFYTMTQMG 333

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V  YS +INGLC+      ALNLFEE+   N        P+TVTYT++ID LCK G
Sbjct: 334 VTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKN------MVPDTVTYTSLIDCLCKSG 387

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +    +LF +M D+   PDV+TYN+LI   C     + A  L  +M DQ ++P+V TF 
Sbjct: 388 RISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFT 447

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++  A    + ++ +G   N  T++ +++G C  G ++ A  L   ME  
Sbjct: 448 ILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDN 507

Query: 388 GC 389
           GC
Sbjct: 508 GC 509



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++++   L K    D    L+  +   G+ PD+ TY+IL++ FC +G+++    +
Sbjct: 196 PNVVIYSMIIDRLCKDTLVDEAYDLYTEMVGKGISPDVVTYSILVSGFCIVGQLNRAIDL 255

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PD   +T L+  LC E ++ EA  +   +       +V+ YSTL++G C 
Sbjct: 256 LNEMVLENINPDIYTYTILVDALCKEGKVKEAENVLAVMVKACVNLDVVVYSTLMDGYCL 315

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +F  M     + GV   P+   Y+ +I+GLCK   VD+A  LF ++  KN+
Sbjct: 316 VNEVNNAKRVFYTMT----QMGVT--PDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNM 369

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY SLI   C +   +    L  EM+D+G  PDV+T+N ++D LCKNG +D A  
Sbjct: 370 VPDTVTYTSLIDCLCKSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIA 429

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M  + + PN  TF+ L+DG C  GR+ +A E F  + + G    V +Y
Sbjct: 430 LFNKMKDQAIRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTY 481



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 6/226 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +F  +   G+ PD++ Y+I+IN  CK+ RV     +   I +    PD V +TSLI  LC
Sbjct: 325 VFYTMTQMGVTPDVHCYSIMINGLCKIKRVDEALNLFEEIHQKNMVPDTVTYTSLIDCLC 384

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              RI     LF ++   G  P+VITY+ LI+ LC+ GH   A+ LF +M +        
Sbjct: 385 KSGRISYVWDLFDEMLDRGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQ------A 438

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +PN  T+T ++DGLCK G +  A E F  +  K    +V TY  +I+G C     +EA 
Sbjct: 439 IRPNVYTFTILLDGLCKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEAL 498

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
            L   M D G   D VTF +++       + D+A +L+  MI RG+
Sbjct: 499 ALQSRMEDNGCISDAVTFEIMIRAFFDKDENDKAEKLVREMIARGL 544



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 75/146 (51%), Gaps = 1/146 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML+ R  PP + ++N L   L K  H D  ++LF ++    + P++YT+ IL++  
Sbjct: 395 LFDEMLD-RGQPPDVITYNNLIDALCKNGHLDRAIALFNKMKDQAIRPNVYTFTILLDGL 453

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+GR+ +       +L   +  +   +T +I GLC E  + EA AL ++++  GC  + 
Sbjct: 454 CKVGRLKNALEFFQDLLTKGYCLNVRTYTVMINGLCKEGLLDEALALQSRMEDNGCISDA 513

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEM 238
           +T+  +I           A  L  EM
Sbjct: 514 VTFEIMIRAFFDKDENDKAEKLVREM 539


>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
           sativus]
          Length = 681

 Score =  231 bits (590), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/380 (34%), Positives = 207/380 (54%), Gaps = 39/380 (10%)

Query: 49  TAKLKESLRLTVKDRASLEQ-FLKERCK-SSGQGDITAITPNEAFCIFDYMLNMRPSPPP 106
           T  ++ +L    +D  S E  F  E  K  SG  +I  +   +A  +F  M+  RP P  
Sbjct: 20  TRSIRHALAKKSRDGESGEAGFRGESLKLRSGFHEIKGL--EDAIDLFSDMVRSRPLPS- 76

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  FN L G + + +  D V+SL++++    +  D+Y++NILI CFC   ++       G
Sbjct: 77  VIDFNKLMGVVVRMERPDLVISLYQKMERKQIPCDVYSFNILIKCFCSCSKLPFALSTFG 136

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I +  F PD V F++L+ GLC E R+ EA  LF ++    C+PNV+T++TL+NGLCR G
Sbjct: 137 KITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREG 192

Query: 227 HTIVALNLFEEMA---------------NGNGKFGVVC---------------KPNTVTY 256
             + A+ L + M                +G  K G                  KPN V Y
Sbjct: 193 RVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHIKPNVVIY 252

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + IIDGL K+G    A  L+ +M++K I PD+ TYN +I GFC +  W+EA  LL EM++
Sbjct: 253 SAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE 312

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P+VVT++ +++   K  K  EA  L + M+ RG+ PNT T+++++DGFC   R++ 
Sbjct: 313 RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNSMIDGFCKQNRLDA 372

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+ +F  M + GC   VF++
Sbjct: 373 AEHMFYVMATKGCSPDVFTF 392



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 161/323 (49%), Gaps = 24/323 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   ML  R   P + +++ L     K + +     L+  +   G+ P+  TYN 
Sbjct: 301 SEAQRLLQEMLE-RKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTITYNS 359

Query: 148 LINCFCKMGRV---SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           +I+ FCK  R+    H F V+    + C +PD   F +LI G C   RI +   L  ++ 
Sbjct: 360 MIDGFCKQNRLDAAEHMFYVMAT--KGC-SPDVFTFNTLIDGYCGAKRIDDGTELLHEMT 416

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G   +  TY+TLI+G C  G    AL+L ++M +       VC P+ VT  T++DGLC
Sbjct: 417 ETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSG-----VC-PDIVTCNTLLDGLC 470

Query: 265 KEGFVDKAKELFLQMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
             G +  A E+F  M+              + PDV TYN LI G      + EA  L  E
Sbjct: 471 DNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKE 530

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  +G+ P+ +T++ +++ LCK  ++DEA+++ + M  +  +P+  TF+TL+ G+C  GR
Sbjct: 531 MPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGR 590

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           V+   ELF  M   G      +Y
Sbjct: 591 VDDGLELFCEMGRRGIVADAITY 613



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 152/305 (49%), Gaps = 6/305 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML  R   P   ++N +     K    D    +F  + + G  PD++T+N L
Sbjct: 337 EAEELYDEMLP-RGIIPNTITYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTL 395

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  +  +    D   + +LI G C    +  A  L  ++ + G 
Sbjct: 396 IDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGV 455

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNTVTYTTIIDGL 263
            P+++T +TL++GLC  G    AL +F+ M                +P+  TY  +I GL
Sbjct: 456 CPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRPFNGVEPDVQTYNILISGL 515

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             EG   +A+EL+ +M  + I P+ +TY+S+I+G C  +  +EA  +   M  +   PDV
Sbjct: 516 INEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDV 575

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTFN ++   CK G++D+   L   M  RG+  +  T+ TL+ GF   G +N A ++F  
Sbjct: 576 VTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQE 635

Query: 384 MESMG 388
           M S G
Sbjct: 636 MISSG 640



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 153/311 (49%), Gaps = 30/311 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L +       ++L  R+   GL P+  TY  +++  CK+G       +
Sbjct: 176 PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKIGDTVSALNL 235

Query: 165 LGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L ++   S   P+ V ++++I GL  + R  +A  L+T+++  G  P++ TY+ +I+G C
Sbjct: 236 LRKMEEMSHIKPNVVIYSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFC 295

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCK-----------------------------PNTV 254
            +G    A  L +EM        VV                               PNT+
Sbjct: 296 SSGRWSEAQRLLQEMLERKINPNVVTYSALINAYVKERKFFEAEELYDEMLPRGIIPNTI 355

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY ++IDG CK+  +D A+ +F  M  K  +PDV T+N+LI G+C A   ++   LL EM
Sbjct: 356 TYNSMIDGFCKQNRLDAAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEM 415

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            + G+  D  T+N ++   C  G ++ A  L + MI  GV P+  T +TL+DG C  G++
Sbjct: 416 TETGLVADTTTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKL 475

Query: 375 NHAKELFVSME 385
             A E+F +M+
Sbjct: 476 KDALEMFKAMQ 486



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 150/281 (53%), Gaps = 17/281 (6%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P + +FN L       K  D    L   +  TGL  D  TYN LI+ FC +
Sbjct: 378 YVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLV 437

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +  +++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 438 GDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASRP 497

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L++EM +     G+V  PNT+TY+++I+GLC
Sbjct: 498 FNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHR----GIV--PNTITYSSMINGLC 551

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +PDVVT+N+L+ G+C A   ++   L  EM  +G+  D +
Sbjct: 552 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAI 611

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           T+  ++    K G ++ A  + + MI  GV P+T T  +++
Sbjct: 612 TYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSML 652



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 17/251 (6%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T++N L          +  L L +++ S+G+ PD+ T N L++  C  G++     +   
Sbjct: 425 TTYNTLIHGFCLVGDLNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKA 484

Query: 168 ILRS-----------CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           + +S              PD   +  LI GL  E + +EA  L+ ++   G  PN ITYS
Sbjct: 485 MQKSKMDLDASRPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYS 544

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++INGLC+      A  +F+ M  G+  F     P+ VT+ T++ G CK G VD   ELF
Sbjct: 545 SMINGLCKQSRLDEATQMFDSM--GSKSF----SPDVVTFNTLVSGYCKAGRVDDGLELF 598

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  + I  D +TY +LIHGF    + N A  +  EM+  GV PD +T   ++  L   
Sbjct: 599 CEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSK 658

Query: 337 GKMDEASRLLE 347
            ++  A  +LE
Sbjct: 659 EELKRAVAMLE 669



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 62/138 (44%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   +++ +   L K    D    +F  + S    PD+ T+N L++ +CK GRV  
Sbjct: 534 RGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAGRVDD 593

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +   + R     DA+ + +LI G      I  A  +F ++ + G  P+ IT  +++ 
Sbjct: 594 GLELFCEMGRRGIVADAITYITLIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLT 653

Query: 221 GLCRTGHTIVALNLFEEM 238
            L        A+ + E++
Sbjct: 654 VLWSKEELKRAVAMLEDL 671



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +FN L     K    D  L LF  +   G+  D  TY  
Sbjct: 557 DEATQMFDSM-GSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYIT 615

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI+ F K+G ++    +   ++ S   PD +   S++  L ++  +  A A+   L+
Sbjct: 616 LIHGFRKVGNINGALDIFQEMISSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672


>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
          Length = 687

 Score =  231 bits (589), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 119/339 (35%), Positives = 189/339 (55%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  ML  RP  P +  F  L G + + +  D V+SL++++    +  D+Y++ I
Sbjct: 61  EDAIDLFSDMLRSRP-LPSVVDFCKLMGVVVRMERPDLVISLYQKMERKQIRCDIYSFTI 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++       G++ +    PD V F +L+ GLC E R+ EA  LF ++    
Sbjct: 120 LIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQMFETT 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK-------- 250
           C+PNV+T++TL+NGLCR G  + A+ L + M     +     +G +    CK        
Sbjct: 180 CRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSAL 239

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        PN V Y+ IID LCK+G    A+ LF +M++K I PD+ TYNS+I G
Sbjct: 240 NLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVG 299

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC +  W++A  LL EM+++ + PDVVT+N +++   K GK  EA  L + M+ RG+ PN
Sbjct: 300 FCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPN 359

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T T+S+++DGFC   R++ A+ +F  M + GC   + ++
Sbjct: 360 TITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITF 398



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 155/310 (50%), Gaps = 23/310 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
           R   P + ++N L     K   +     L+  +   G+ P+  TY+ +I+ FCK  R+  
Sbjct: 319 RKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPNTITYSSMIDGFCKQNRLDA 378

Query: 159 -SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++    + C +P+ + F +LI G C   RI +   L  ++   G   +  TY+T
Sbjct: 379 AEHMFYLMAT--KGC-SPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNT 435

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G    G    AL+L +EM +       +C P+ VT  T++DGLC  G +  A E+F 
Sbjct: 436 LIHGFYLVGDLNAALDLLQEMISSG-----LC-PDIVTCDTLLDGLCDNGKLKDALEMFK 489

Query: 278 QMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            M+              + PDV TYN LI G      + EA  L  EM  +G+ PD +T+
Sbjct: 490 VMQKSKKDLDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITY 549

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++D LCK  ++DEA+++ + M  +  +PN  TF+TL++G+C  GRV+   ELF  M  
Sbjct: 550 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGR 609

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 610 RGIVANAITY 619



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 157/345 (45%), Gaps = 65/345 (18%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           SF +L  C          LS F +L   GL PD+ T+N L++  C   RVS    +  ++
Sbjct: 116 SFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSEALNLFHQM 175

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG---------------CK---- 209
             +   P+ V FT+L+ GLC E RI+EA AL  ++   G               CK    
Sbjct: 176 FETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDT 235

Query: 210 -----------------PNVITYSTLINGLCRTGHTIVALNLFEEMAN------------ 240
                            PNV+ YS +I+ LC+ G    A NLF EM              
Sbjct: 236 VSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNS 295

Query: 241 ------GNGKFGVV-----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  +G++                P+ VTY  +I+   KEG   +A+EL+ +M  + 
Sbjct: 296 MIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRG 355

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ +TY+S+I GFC  N  + A  +   M  +G  P+++TFN ++D  C   ++D+  
Sbjct: 356 IIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGM 415

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            LL  M   G+  +T+T++TL+ GF L G +N A +L   M S G
Sbjct: 416 ELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSG 460



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA  + D M+     P  +T   ++ G + K     + L+L +++     + P++  Y+ 
Sbjct: 202 EAVALLDRMMEDGLQPTQITYGTIVDG-MCKKGDTVSALNLLRKMEEVSHIIPNVVIYSA 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GR S    +   +      PD   + S+I G C+  R  +A  L  ++    
Sbjct: 261 IIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ LIN   + G    A  L++EM       G++  PNT+TY+++IDG CK+ 
Sbjct: 321 ISPDVVTYNALINAFVKEGKFFEAEELYDEML----PRGII--PNTITYSSMIDGFCKQN 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ +F  M  K  +P+++T+N+LI G+C A   ++   LL EM + G+  D  T+N
Sbjct: 375 RLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++      G ++ A  LL+ MI  G+ P+  T  TL+DG C  G++  A E+F  M+
Sbjct: 435 TLIHGFYLVGDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ 492



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 150/284 (52%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P L +FN L       K  D  + L   +  TGL  D  TYN LI+ F  +
Sbjct: 384 YLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLV 443

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   PD V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 444 GDLNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHP 503

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 504 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 557

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +P+VVT+ +LI+G+C A   ++   L  EM  +G+  + +
Sbjct: 558 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 617

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++    K G ++ A  + + MI  GV P+T T   ++ G 
Sbjct: 618 TYITLICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 661



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 149/305 (48%), Gaps = 6/305 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML     P  +T  +++ G   K    D    +F  + + G  P+L T+N L
Sbjct: 343 EAEELYDEMLPRGIIPNTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPNLITFNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   R+  G  +L  +  +    D   + +LI G      +  A  L  ++ + G 
Sbjct: 402 IDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAALDLLQEMISSGL 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNTVTYTTIIDGL 263
            P+++T  TL++GLC  G    AL +F+ M                +P+  TY  +I GL
Sbjct: 462 CPDIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  +   M  +   P+V
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNV 581

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF  +++  CK G++D+   L   M  RG+  N  T+ TL+ GF   G +N A ++F  
Sbjct: 582 VTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQE 641

Query: 384 MESMG 388
           M S G
Sbjct: 642 MISSG 646



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 1/150 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    P++ T+  L
Sbjct: 529 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFDSMGSKSFSPNVVTFTTL 587

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK GRV  G  +   + R     +A+ + +LI G      I  A  +F ++ + G 
Sbjct: 588 INGYCKAGRVDDGLELFCEMGRRGIVANAITYITLICGFRKVGNINGALDIFQEMISSGV 647

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            P+ IT   ++ GL        A+ + E++
Sbjct: 648 YPDTITIRNMLTGLWSKEELKRAVAMLEKL 677



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 563 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI  F K+G ++    +   ++ S   PD +   +++ GL ++  +  A A+  KL+
Sbjct: 622 LICGFRKVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAVAMLEKLQ 678


>gi|15222409|ref|NP_176529.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205330|sp|Q9SH26.1|PP102_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63400
 gi|6633845|gb|AAF19704.1|AC008047_11 F2K11.22 [Arabidopsis thaliana]
 gi|332195974|gb|AEE34095.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 577

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 127/367 (34%), Positives = 198/367 (53%), Gaps = 50/367 (13%)

Query: 73  RCKSSGQGDITAITPN--------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           R  SSG GD   I  N        +A  +F  M+  RP  P +  FN L   +AK K +D
Sbjct: 44  RAFSSGSGDYREILRNGLHSMKLDDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFD 102

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 170
            V+SL +++   G+  +LYTYNILINCFC+  ++S    +LG++++              
Sbjct: 103 LVISLGEKMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 171 ---------------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
                                  + PD + FT+LI GL   ++  EA AL  ++   GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN++TY  ++NGLC+ G   +A NL  +M           + N V Y+T+ID LCK    
Sbjct: 223 PNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK------IEANVVIYSTVIDSLCKYRHE 276

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A  LF +M++K + P+V+TY+SLI   C    W++A+ LL +M+++ + P+VVTFN +
Sbjct: 277 DDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNAL 336

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D   K GK+ EA +L + MI R ++P+  T+S+L++GFC+  R++ AK +F  M S  C
Sbjct: 337 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 396

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 397 FPNVVTY 403



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 158/287 (55%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ +   L K +H D  L+LF  + + G+ P++ TY+ LI+C C   R S    +L  ++
Sbjct: 263 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYERWSDASRLLSDMI 322

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F +LI     E +++EA  L+ ++      P++ TYS+LING C      
Sbjct: 323 ERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 382

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++FE M + +      C PN VTY T+I+G CK   +D+  ELF +M  + +  + V
Sbjct: 383 EAKHMFELMISKD------CFPNVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTV 436

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LIHGF  A D + A  +  +M+  GV P+++T+N ++D LCKNGK+++A  + E +
Sbjct: 437 TYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 496

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P   T++ +++G C  G+V    +LF S+   G K  V  Y
Sbjct: 497 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIY 543



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 158/301 (52%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M N +   P + +++ L  CL   + +     L   +    + P++ T+N 
Sbjct: 277 DDALNLFTEMEN-KGVRPNVITYSSLISCLCNYERWSDASRLLSDMIERKINPNVVTFNA 335

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   +++    PD   ++SLI G C   R+ EA  +F  + +  
Sbjct: 336 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 395

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+TLING C+       + LF EM+    + G+V   NTVTYTT+I G  +  
Sbjct: 396 CFPNVVTYNTLINGFCKAKRIDEGVELFREMS----QRGLV--GNTVTYTTLIHGFFQAR 449

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+ +F QM    ++P+++TYN+L+ G C      +A  +   +    ++P + T+N
Sbjct: 450 DCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYN 509

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +CK GK+++   L   + L+GV P+   ++T++ GFC  G    A  LF  M   
Sbjct: 510 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKGLKEEADALFRKMRED 569

Query: 388 G 388
           G
Sbjct: 570 G 570


>gi|354726093|emb|CCD31439.1| RNA processing factor 3 [Arabidopsis thaliana]
          Length = 629

 Score =  231 bits (588), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 190/344 (55%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  RP  P +  FN L   +AK K +D V+SL +R+ +  +  DLY+YNI
Sbjct: 62  DDAIGLFGEMVQSRP-LPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-------------- 193
           LINCFC+  ++     VLG++++  + PD V  +SL+ G C   RI              
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 194 ---------------------MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                 EA AL  ++   GC+P+++TY  ++NGLC+ G   +AL
Sbjct: 181 YKPDTVTFNTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTYGAVVNGLCKRGDIDLAL 240

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L ++M  G        + + V Y TIIDGLCK   +D A  LF +M+ K I PDV TYN
Sbjct: 241 SLLKKMEKGK------IEADVVIYNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYN 294

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI   C    W++A+ LL  M+++ + P+VVTF+ ++D   K GK+ EA +L + MI R
Sbjct: 295 SLISCLCNYGRWSDASRLLSNMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++P+  T+S+L++GFC+  R++ AK +F  M S  C   V +Y
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 160/287 (55%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K KH D   +LF ++ + G+ PD++TYN LI+C C  GR S    +L  ++
Sbjct: 258 YNTIIDGLCKYKHIDDAFALFNKMETKGIRPDVFTYNSLISCLCNYGRWSDASRLLSNMI 317

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F++LI     E +++EA  L+ ++      P++ TYS+LING C      
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++FE M + +      C PN VTY T+I G CK   V++  ELF +M  + +  + V
Sbjct: 378 EAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 431

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G   A D + A  +  +M+  GV PD++T+++++D LCK GK+++A  + E +
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+  T++ +++G C  G+V    +LF S+   G K  V  Y
Sbjct: 492 QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 138/278 (49%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FP++ TYN L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   + +     + V + +LI+GL        A  +F K+ + G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITYS L++GLC+ G    AL +FE +           +P+  TY  +I+G+CK G 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPDIYTYNIMIEGMCKAGK 515

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + P+V+ Y ++I GFC      EA+ L  EM + G  PD   +N 
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNT 575

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    ++G    ++ L++ M   G   + ST S +++
Sbjct: 576 LIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/122 (25%), Positives = 60/122 (49%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A  LF +M      P +V +N L+        ++    L   M +  +  D+ ++N+
Sbjct: 61  LDDAIGLFGEMVQSRPLPSIVEFNKLLSAIAKMKKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C+  ++  A  +L  M+  G  P+  T S+L++G+C + R++ A  L   M  MG
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMG 180

Query: 389 CK 390
            K
Sbjct: 181 YK 182


>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 477

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 128/303 (42%), Positives = 175/303 (57%), Gaps = 7/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+ ML MRP PPP   F+ +   L K KHY TV+SLFK+  S G+ P+L T NILINCFC
Sbjct: 81  FNRMLLMRP-PPPTFHFDNILSSLVKNKHYLTVISLFKQFQSNGVTPNLCTLNILINCFC 139

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
            +  ++  F V   IL+  + PDA+   +LIKGLC    I  A     K+ A G + + +
Sbjct: 140 HLAHITFAFSVFANILKRGYHPDAITLNTLIKGLCFCGEIKRALYFHDKVVAQGFQLDQV 199

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TLINGLC+ G T     L  ++       G   KP+ V YTTII  LCK   V  A 
Sbjct: 200 SYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDVVMYTTIIHCLCKNKRVGDAC 253

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L+ +M  K I+P+V TYN+LI+GFC   +  EA  LL EM  + + PDV TFN+++D L
Sbjct: 254 DLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDAL 313

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K GK+DEA  L E M  + + PN  T+++L+DG C    +  A  L   M+  G +  V
Sbjct: 314 GKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDV 373

Query: 394 FSY 396
           +SY
Sbjct: 374 YSY 376



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 6/250 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +  CL K K       L+  +   G+ P+++TYN LI  FC MG +   F +
Sbjct: 231 PDVVMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYNTLIYGFCIMGNLKEAFSL 290

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD   F  LI  L  E +I EA +LF ++K     PN++TY++LI+GLC+
Sbjct: 291 LNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCK 350

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             H   A+ L ++M       G+  +P+  +YT ++D LCK G ++ AK+ F  +  K  
Sbjct: 351 NHHLERAIALCKKMKEQ----GI--QPDVYSYTILLDALCKGGRLENAKQFFQHLLVKGY 404

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + +V TYN +I+G C A  + +   L  +M  +G  PD +TF  I+  L +  + D+A +
Sbjct: 405 HLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEK 464

Query: 345 LLELMILRGV 354
            L  MI RG+
Sbjct: 465 FLREMIARGL 474



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 6/258 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L K      V  L ++L    + PD+  Y  +I+C CK  RV     +   
Sbjct: 199 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYTTIIHCLCKNKRVGDACDLYSE 258

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++    +P+   + +LI G C    + EA +L  ++K     P+V T++ LI+ L + G 
Sbjct: 259 MIVKGISPNVFTYNTLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGK 318

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A++LFEEM + N        PN VTYT++IDGLCK   +++A  L  +MK++ I PD
Sbjct: 319 IDEAISLFEEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPD 372

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V +Y  L+   C       A      ++ +G   +V T+NV+++ LCK G   +   L  
Sbjct: 373 VYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKS 432

Query: 348 LMILRGVNPNTSTFSTLM 365
            M  +G  P+  TF T++
Sbjct: 433 KMEGKGCMPDAITFKTII 450


>gi|356561416|ref|XP_003548977.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 456

 Score =  230 bits (587), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 184/309 (59%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML M  +PP +  F  + G LAK KHY T +SL K++   G+ P+L T NI
Sbjct: 34  DDAISQFNGMLLMHHTPP-IVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVTLNI 92

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +G++S  F VLG+IL+  + P+ +  T+L+KGLC +  + ++     K+ A G
Sbjct: 93  LINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVVAQG 152

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++Y TL+NGLC+ G T  A+     + + +         N V Y TIIDGLCK+ 
Sbjct: 153 FQMNQVSYGTLLNGLCKIGETRCAIKFLRMIEDSSTGL------NVVMYNTIIDGLCKDK 206

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A + + +M  + I P+V+TY +LI GFC A     A  LL EM+ + + P+V T+ 
Sbjct: 207 LVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMILKNINPNVYTYA 266

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK GK+ EA  LL  M  RG   +  T+++L+DGFC    ++ A  LF+ M+  
Sbjct: 267 ILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEW 326

Query: 388 GCKHTVFSY 396
           G +   ++Y
Sbjct: 327 GIQPNKYTY 335



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  +T   L+ G   K +   +V     ++ + G   +  +Y  L+
Sbjct: 106 SFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSV-HFHDKVVAQGFQMNQVSYGTLL 164

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G        L  I  S    + V + ++I GLC +  + EA   ++++ A G  
Sbjct: 165 NGLCKIGETRCAIKFLRMIEDSSTGLNVVMYNTIIDGLCKDKLVNEAYDFYSEMNARGIF 224

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNVITY+TLI G C  G    A +L  EM   N        PN  TY  +ID LCKEG V
Sbjct: 225 PNVITYTTLIGGFCLAGQLTGAFSLLNEMILKN------INPNVYTYAILIDALCKEGKV 278

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +AK L  +M  +    DVVTY SL+ GFC   + ++A  L ++M + G+QP+  T+  +
Sbjct: 279 KEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTAL 338

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK G++ +A +L + ++++G   +  T++ ++ G C  G ++ A  +   ME  GC
Sbjct: 339 IDGLCKGGRLKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGC 398

Query: 390 KHTVFSY 396
              V ++
Sbjct: 399 IPNVVTF 405



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 133/245 (54%), Gaps = 6/245 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K K  +     +  +N+ G+FP++ TY  LI  FC  G+++  F +L  ++
Sbjct: 195 YNTIIDGLCKDKLVNEAYDFYSEMNARGIFPNVITYTTLIGGFCLAGQLTGAFSLLNEMI 254

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+   +  LI  LC E ++ EA  L  ++   G   +V+TY++L++G C+  +  
Sbjct: 255 LKNINPNVYTYAILIDALCKEGKVKEAKNLLAEMHYRGQPADVVTYTSLLDGFCKNQNLD 314

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  LF +M     ++G+  +PN  TYT +IDGLCK G +  A++LF  +  K    DV 
Sbjct: 315 KATALFMKMK----EWGI--QPNKYTYTALIDGLCKGGRLKDAQKLFQDLLVKGCCIDVC 368

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN +I G C     +EA  +  +M D G  P+VVTF +I+  L K  + D+A +LL  M
Sbjct: 369 TYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEIIIRSLFKKDENDKAEKLLHEM 428

Query: 350 ILRGV 354
           I +G+
Sbjct: 429 IAKGL 433



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 68/141 (48%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R  P  + ++  L     K ++ D   +LF ++   G+ P+ YTY  LI+  CK GR
Sbjct: 288 MHYRGQPADVVTYTSLLDGFCKNQNLDKATALFMKMKEWGIQPNKYTYTALIDGLCKGGR 347

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +   +L      D   +  +I GLC E  + EA A+ +K++  GC PNV+T+  
Sbjct: 348 LKDAQKLFQDLLVKGCCIDVCTYNVMIGGLCKEGMLDEALAIKSKMEDNGCIPNVVTFEI 407

Query: 218 LINGLCRTGHTIVALNLFEEM 238
           +I  L +      A  L  EM
Sbjct: 408 IIRSLFKKDENDKAEKLLHEM 428



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/131 (26%), Positives = 63/131 (48%)

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  VD A   F  M   +  P +V +  ++        ++ A  L  +M  +G++P++VT
Sbjct: 30  DNVVDDAISQFNGMLLMHHTPPIVEFGEILGYLAKMKHYSTAISLSKQMEVKGIEPNLVT 89

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N++++  C  G+M  +  +L  ++  G  PNT T +TLM G CL G V  +      + 
Sbjct: 90  LNILINCFCHLGQMSFSFSVLGKILKLGYQPNTITLTTLMKGLCLKGEVQKSVHFHDKVV 149

Query: 386 SMGCKHTVFSY 396
           + G +    SY
Sbjct: 150 AQGFQMNQVSY 160


>gi|18391414|ref|NP_563911.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75167758|sp|Q9ASZ8.1|PPR37_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g12620
 gi|13605505|gb|AAK32746.1|AF361578_1 At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|24111307|gb|AAN46777.1| At1g12620/T12C24_25 [Arabidopsis thaliana]
 gi|332190781|gb|AEE28902.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 621

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 194/355 (54%), Gaps = 34/355 (9%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     I  I  ++A  +F  M   RP P  L  F+ LF  +A+TK YD VL L 
Sbjct: 41  RERLRSG----IVDIKEDDAVDLFQEMTRSRPRPR-LIDFSRLFSVVARTKQYDLVLDLC 95

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K++   G+  +LYT +I+INC C+  ++S  F  +G+I++  + PD V F++LI GLC E
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK------ 244
            R+ EA  L  ++   G KP +IT + L+NGLC  G    A+ L + M     +      
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215

Query: 245 ---FGVVCKP--------------------NTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
                V+CK                     + V Y+ IIDGLCK+G +D A  LF +M+ 
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K    D++ Y +LI GFCYA  W++   LL +M+ + + PDVV F+ ++D   K GK+ E
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L + MI RG++P+T T+++L+DGFC   +++ A  +   M S GC   + ++
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+ M   P  +T   L+ G     K  D VL L  R+  TG  P+  TY  
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL-LIDRMVETGFQPNEVTYGP 217

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   CK G+ +    +L ++       DAV ++ +I GLC +  +  A  LF +++  G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K ++I Y+TLI G C  G       L  +M            P+ V ++ +ID   KEG
Sbjct: 278 FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK------ITPDVVAFSALIDCFVKEG 331

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+EL  +M  + I+PD VTY SLI GFC  N  ++AN +L  M+ +G  P++ TFN
Sbjct: 332 KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  CK   +D+   L   M LRGV  +T T++TL+ GFC  G++  AKELF  M S 
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451

Query: 388 GCKHTVFSY 396
             +  + SY
Sbjct: 452 RVRPDIVSY 460



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             ++++   L K    D   +LF  +   G   D+  Y  LI  FC  GR   G  +L  
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRD 307

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +++   TPD VAF++LI     E ++ EA  L  ++   G  P+ +TY++LI+G C+   
Sbjct: 308 MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQ 367

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A ++ + M +        C PN  T+  +I+G CK   +D   ELF +M  + +  D
Sbjct: 368 LDKANHMLDLMVSKG------CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTYN+LI GFC       A  L  EM+ + V+PD+V++ +++D LC NG+ ++A  + E
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +    +  +   ++ ++ G C   +V+ A +LF S+   G K  V +Y
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 158/301 (52%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F+ M  ++     +  +  L         +D    L + +    + PD+  ++ 
Sbjct: 264 DNAFNLFNEM-EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+CF K G++     +   +++   +PD V +TSLI G C E+++ +A  +   + + G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ LING C+       L LF +M+      GVV   +TVTY T+I G C+ G
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMS----LRGVV--ADTVTYNTLIQGFCELG 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + PD+V+Y  L+ G C   +  +A  +  ++    ++ D+  +N
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   + L+GV P+  T++ ++ G C  G ++ A  LF  ME  
Sbjct: 497 IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556

Query: 388 G 388
           G
Sbjct: 557 G 557



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F+ L  C  K         L K +   G+ PD  TY  LI+ FCK  ++  
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++     P+   F  LI G C  + I +   LF K+   G   + +TY+TLI 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G   VA  LF+EM +         +P+ V+Y  ++DGLC  G  +KA E+F +++
Sbjct: 431 GFCELGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  D+  YN +IHG C A+  ++A  L   +  +GV+PDV T+N+++  LCK G + 
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS 544

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA  L   M   G +PN  T++ L+      G    + +L   ++  G
Sbjct: 545 EADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/279 (27%), Positives = 136/279 (48%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +   M+    SP  +T  +L+ G   K    D    +   + S G  P++ T+NI
Sbjct: 334 REAEELHKEMIQRGISPDTVTYTSLIDG-FCKENQLDKANHMLDLMVSKGCGPNIRTFNI 392

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK   +  G  +  ++       D V + +LI+G C   ++  A  LF ++ +  
Sbjct: 393 LINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRR 452

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P++++Y  L++GLC  G    AL +FE++     +  +        Y  II G+C   
Sbjct: 453 VRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIG------IYNIIIHGMCNAS 506

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A +LF  +  K + PDV TYN +I G C     +EA+ L  +M + G  P+  T+N
Sbjct: 507 KVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYN 566

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +++      G   ++++L+E +   G + + ST   ++D
Sbjct: 567 ILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 127/251 (50%), Gaps = 10/251 (3%)

Query: 95  DYMLNMRPSP---PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           ++ML++  S    P + +FN+L     K    D  L LF++++  G+  D  TYN LI  
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           FC++G++     +   ++     PD V++  L+ GLC      +A  +F K++    + +
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           +  Y+ +I+G+C       A +LF  +       GV  KP+  TY  +I GLCK+G + +
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK----GV--KPDVKTYNIMIGGLCKKGSLSE 545

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  LF +M++   +P+  TYN LI       D  ++  L+ E+   G   D  T  +++D
Sbjct: 546 ADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTVKMVVD 605

Query: 332 ELCKNGKMDEA 342
            L  +G++ ++
Sbjct: 606 ML-SDGRLKKS 615


>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  230 bits (587), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 125/359 (34%), Positives = 200/359 (55%), Gaps = 43/359 (11%)

Query: 73  RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
           R K S  G ++ +  ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL ++
Sbjct: 49  REKLSRNG-LSELKLDDAVALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQ 106

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           + + G+  + YTY+IL+NCFC+  ++     VLG++++  + PD V  +SL+ G C   R
Sbjct: 107 MQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKR 166

Query: 193 I-----------------------------------MEAAALFTKLKAFGCKPNVITYST 217
           I                                    EA AL  ++ A GC+P++ TY T
Sbjct: 167 ISEAVALVDQMVEMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGT 226

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++NGLC+ G   +AL+L ++M  G        + N V Y TIIDGLCK   +D A +LF 
Sbjct: 227 VVNGLCKRGDIDLALSLLKKMEKGK------IEANVVIYNTIIDGLCKYKHMDDAFDLFN 280

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M+ K I PDV TYNSLI   C    W++A+ LL +M+++ + P+VVTFN ++D   K G
Sbjct: 281 KMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEG 340

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+ EA +L + MI R ++PN  T+++L++GFC+  R++ A+++F  M S  C   V +Y
Sbjct: 341 KLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 399



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 157/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K KH D    LF ++ + G+ PD++TYN LI+C C  GR S    +L  ++
Sbjct: 259 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGRWSDASRLLSDMI 318

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F SLI     E +++EA  LF ++      PN++TY++LING C      
Sbjct: 319 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 378

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +F  M + +      C P+ VTY T+I G CK   V++  ELF +M  + +  + V
Sbjct: 379 EAQQIFTLMVSKD------CLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 432

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G   A D + A  +  +M+  GV PD++T+++++D LCK GK+++A  + E +
Sbjct: 433 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 492

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + PN  T++ +++G C  G+V    +LF S+   G K  V  Y
Sbjct: 493 QKSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 539



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 139/288 (48%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN L    AK         LF  +    + P++ TYN LIN FC   R+  
Sbjct: 320 RKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDE 379

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   ++     PD V + +LIKG C   R+ E   LF ++   G   N +TY+TLI 
Sbjct: 380 AQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQ 439

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GL + G   +A  +F++M +          P+ +TY+ ++DGLCK G ++KA  +F  ++
Sbjct: 440 GLFQAGDCDMAQKIFKKMVSDG------VPPDIITYSILLDGLCKYGKLEKALVVFEYLQ 493

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              + P++ TYN +I G C A    +   L   +  +GV+P+V+ +  ++   C+ G  +
Sbjct: 494 KSKMEPNIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKE 553

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA  L   M   G  P++  ++TL+      G    + EL   M S G
Sbjct: 554 EADALFREMKEDGTLPDSGCYNTLIRARLRDGDKAASAELIKEMRSCG 601



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  R   P + ++N L          D    +F  + S    PD+ TYN L
Sbjct: 344 EAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 402

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   + +     + V + +LI+GL        A  +F K+ + G 
Sbjct: 403 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 462

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITYS L++GLC+ G    AL +FE +           +PN  TY  +I+G+CK G 
Sbjct: 463 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPNIYTYNIMIEGMCKAGK 516

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + P+V+ Y ++I GFC      EA+ L  EM + G  PD   +N 
Sbjct: 517 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPDSGCYNT 576

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    ++G    ++ L++ M   G   + ST S +++
Sbjct: 577 LIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 614


>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 594

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 122/340 (35%), Positives = 195/340 (57%), Gaps = 16/340 (4%)

Query: 61  KDR---ASLEQF-LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           +DR   AS + F ++++CK     +      ++A   F+ M++M P P  +T FN L   
Sbjct: 60  RDRHKDASFDNFAVRDKCKGGSFSNF-----DDALAYFNQMVHMNPFPC-ITQFNQLLAA 113

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L + KHYD+V+S+++++   G+   +YT  ILINC C +  V  GF VLG+I +  F P 
Sbjct: 114 LVRMKHYDSVVSIYRKMEFFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPS 173

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            + F +LI GLC E RI+EA      + + G +P V T++ ++NGLC+ G T  A+   +
Sbjct: 174 IITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMK 233

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M   +      C+P  V+Y+ IID LCK   V++A +LF  M+   I+P VVTYNSLI+
Sbjct: 234 KMVELD------CEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIY 287

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C +  W +A+ L  EM++  ++PDVVTF++++D LCK G + EA  +   MI   + P
Sbjct: 288 GMCNSGQWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEP 347

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  T+S+L+ G C +     +  L   M S   +  V ++
Sbjct: 348 DIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTF 387



 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 106/292 (36%), Positives = 173/292 (59%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L         +     + S G  P +YT+ +++N  CK+G+ S   V 
Sbjct: 172 PSIITFNTLINGLCIEGRIVEAMEQLDYIMSRGYQPTVYTHTMIVNGLCKIGKTSAAIVW 231

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + +++     P+ V+++ +I  LC    + EA  LF  +++ G  P V+TY++LI G+C 
Sbjct: 232 MKKMVELDCEPEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCN 291

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    A  LF+EM   N       KP+ VT++ ++D LCKEG V +A  +F +M    +
Sbjct: 292 SGQWKQASILFKEMLEWN------MKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAM 345

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY+SLIHG C ++ W E++ LL EM+ + ++PDVVTF++ +D  CK G + EA  
Sbjct: 346 EPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQS 405

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ LMI RG+ PN  T+++LMDG+CL  +++ A+++F  M + GC   V SY
Sbjct: 406 IINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSY 457



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 168/292 (57%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++++   L K +  +  + LF  + S G+ P + TYN LI   C  G+     ++
Sbjct: 242 PEVVSYSIIIDSLCKNRLVNEAVDLFYHMRSIGISPTVVTYNSLIYGMCNSGQWKQASIL 301

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD V F+ L+  LC E  ++EA ++F K+     +P+++TYS+LI+G+C+
Sbjct: 302 FKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     +  L  EM + N       +P+ VT++  +D  CK+G V +A+ +   M ++ +
Sbjct: 362 SSLWKESSTLLNEMLSRN------IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGL 415

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTYNSL+ G+C  +  +EA  +   M+++G  PDV+++N+++   CK+ ++DEA +
Sbjct: 416 RPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQ 475

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  +G+ PN+ T +TL+ G C  GR   AKELF  M S GC   + +Y
Sbjct: 476 LFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKKMGSHGCPPDLITY 527



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 163/326 (50%), Gaps = 30/326 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F +M ++  SP  +T  +L++G +  +  +     LFK +    + PD+ T++I
Sbjct: 261 NEAVDLFYHMRSIGISPTVVTYNSLIYG-MCNSGQWKQASILFKEMLEWNMKPDVVTFSI 319

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G V     V G++++    PD V ++SLI G+C  S   E++ L  ++ +  
Sbjct: 320 LVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCKSSLWKESSTLLNEMLSRN 379

Query: 208 CKPNVITYSTLINGLCRTGHT------------------IVALN-------LFEEMANGN 242
            +P+V+T+S  ++  C+ G                    +V  N       L  +M    
Sbjct: 380 IRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEAR 439

Query: 243 GKFGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
             F ++    C P+ ++Y  +I G CK   +D+AK+LF +M  K + P+ +T+ +LI G 
Sbjct: 440 KVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGL 499

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C A     A  L  +M   G  PD++T++ ++   CK+G +DEA  L E +    + PN 
Sbjct: 500 CQAGRPYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNH 559

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
                L+ G C  G++  AKELF S+
Sbjct: 560 VICKILLGGMCKAGKLEDAKELFSSL 585



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 145/270 (53%), Gaps = 7/270 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+ +   P  +T  +L+ G + K+  +    +L   + S  + PD+ T++I 
Sbjct: 332 EALSVFGKMIQIAMEPDIVTYSSLIHG-VCKSSLWKESSTLLNEMLSRNIRPDVVTFSIW 390

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FCK G VS    ++  ++     P+ V + SL+ G C  S++ EA  +F  +   GC
Sbjct: 391 VDVFCKKGMVSEAQSIINLMIERGLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGC 450

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V++Y+ LI G C++     A  LF+EM++          PN++T+TT+I GLC+ G 
Sbjct: 451 APDVLSYNILIKGYCKSERIDEAKQLFDEMSHKG------LTPNSITHTTLISGLCQAGR 504

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKELF +M      PD++TY++L+ GFC     +EA  L   +    ++P+ V   +
Sbjct: 505 PYAAKELFKKMGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEALKKSQLKPNHVICKI 564

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNT 358
           ++  +CK GK+++A  L   + +  + P+ 
Sbjct: 565 LLGGMCKAGKLEDAKELFSSLSIEELQPDV 594


>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
          Length = 735

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/355 (35%), Positives = 194/355 (54%), Gaps = 34/355 (9%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     I  I  ++A  +F  M   RP P  L  F+ LF  +A+TK YD VL L 
Sbjct: 41  RERLRSG----IVDIKEDDAVDLFQEMTRSRPRPR-LIDFSRLFSVVARTKQYDLVLDLC 95

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K++   G+  +LYT +I+INC C+  ++S  F  +G+I++  + PD V F++LI GLC E
Sbjct: 96  KQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLE 155

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK------ 244
            R+ EA  L  ++   G KP +IT + L+NGLC  G    A+ L + M     +      
Sbjct: 156 GRVSEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVLLIDRMVETGFQPNEVTY 215

Query: 245 ---FGVVCKP--------------------NTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
                V+CK                     + V Y+ IIDGLCK+G +D A  LF +M+ 
Sbjct: 216 GPVLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEI 275

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K    D++ Y +LI GFCYA  W++   LL +M+ + + PDVV F+ ++D   K GK+ E
Sbjct: 276 KGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCFVKEGKLRE 335

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L + MI RG++P+T T+++L+DGFC   +++ A  +   M S GC   + ++
Sbjct: 336 AEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTF 390



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 162/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+ M   P  +T   L+ G     K  D VL L  R+  TG  P+  TY  
Sbjct: 159 SEALELVDRMVEMGHKPTLITLNALVNGLCLNGKVSDAVL-LIDRMVETGFQPNEVTYGP 217

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   CK G+ +    +L ++       DAV ++ +I GLC +  +  A  LF +++  G
Sbjct: 218 VLKVMCKSGQTALAMELLRKMEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKG 277

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K ++I Y+TLI G C  G       L  +M            P+ V ++ +ID   KEG
Sbjct: 278 FKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRK------ITPDVVAFSALIDCFVKEG 331

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+EL  +M  + I+PD VTY SLI GFC  N  ++AN +L  M+ +G  P++ TFN
Sbjct: 332 KLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPNIRTFN 391

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  CK   +D+   L   M LRGV  +T T++TL+ GFC  G++  AKELF  M S 
Sbjct: 392 ILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSR 451

Query: 388 GCKHTVFSY 396
             +  + SY
Sbjct: 452 RVRPDIVSY 460



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 147/289 (50%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             ++++   L K    D   +LF  +   G   D+  Y  LI  FC  GR   G  +L  
Sbjct: 248 VKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRD 307

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +++   TPD VAF++LI     E ++ EA  L  ++   G  P+ +TY++LI+G C+   
Sbjct: 308 MIKRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQ 367

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A ++ + M +        C PN  T+  +I+G CK   +D   ELF +M  + +  D
Sbjct: 368 LDKANHMLDLMVSKG------CGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVAD 421

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTYN+LI GFC       A  L  EM+ + V+PD+V++ +++D LC NG+ ++A  + E
Sbjct: 422 TVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFE 481

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +    +  +   ++ ++ G C   +V+ A +LF S+   G K  V +Y
Sbjct: 482 KIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTY 530



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 158/301 (52%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F+ M  ++     +  +  L         +D    L + +    + PD+  ++ 
Sbjct: 264 DNAFNLFNEM-EIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSA 322

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+CF K G++     +   +++   +PD V +TSLI G C E+++ +A  +   + + G
Sbjct: 323 LIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKG 382

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ LING C+       L LF +M+      GVV   +TVTY T+I G C+ G
Sbjct: 383 CGPNIRTFNILINGYCKANLIDDGLELFRKMS----LRGVV--ADTVTYNTLIQGFCELG 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF +M  + + PD+V+Y  L+ G C   +  +A  +  ++    ++ D+  +N
Sbjct: 437 KLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIGIYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  +C   K+D+A  L   + L+GV P+  T++ ++ G C  G ++ A  LF  ME  
Sbjct: 497 IIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEED 556

Query: 388 G 388
           G
Sbjct: 557 G 557



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 141/288 (48%), Gaps = 6/288 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F+ L  C  K         L K +   G+ PD  TY  LI+ FCK  ++  
Sbjct: 311 RKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLDK 370

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++     P+   F  LI G C  + I +   LF K+   G   + +TY+TLI 
Sbjct: 371 ANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQ 430

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G   VA  LF+EM +         +P+ V+Y  ++DGLC  G  +KA E+F +++
Sbjct: 431 GFCELGKLEVAKELFQEMVSRR------VRPDIVSYKILLDGLCDNGEPEKALEIFEKIE 484

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  D+  YN +IHG C A+  ++A  L   +  +GV+PDV T+N+++  LCK G + 
Sbjct: 485 KSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLS 544

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA  L   M   G +PN  T++ L+      G    + +L   ++  G
Sbjct: 545 EADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCG 592



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/332 (28%), Positives = 155/332 (46%), Gaps = 31/332 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M+    SP  +T  +L+ G   K    D    +   + S G  P++ T+NIL
Sbjct: 335 EAEELHKEMIQRGISPDTVTYTSLIDG-FCKENQLDKANHMLDLMVSKGCGPNIRTFNIL 393

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK   +  G  +  ++       D V + +LI+G C   ++  A  LF ++ +   
Sbjct: 394 INGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRV 453

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P++++Y  L++GLC  G    AL +FE++     +  +        Y  II G+C    
Sbjct: 454 RPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELDIG------IYNIIIHGMCNASK 507

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +LF  +  K + PDV TYN +I G C     +EA+ L  +M + G  P+  T+N+
Sbjct: 508 VDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNI 567

Query: 329 IMDELCKNGKMDEASRLLE----------------------LMILRGVNPNTSTFSTLMD 366
           ++      G   ++++L+E                       M+  G  P+  TF+TL+ 
Sbjct: 568 LIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLR 627

Query: 367 GFCL--TGRVNHAKELFVSMESMGCKHTVFSY 396
            FCL     V  A  LF +M++MG K  V +Y
Sbjct: 628 PFCLEENASVYDAPTLFKNMKAMGYKPNVVTY 659



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/323 (26%), Positives = 149/323 (46%), Gaps = 33/323 (10%)

Query: 95  DYMLNMRPSP---PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           ++ML++  S    P + +FN+L     K    D  L LF++++  G+  D  TYN LI  
Sbjct: 372 NHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQG 431

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           FC++G++     +   ++     PD V++  L+ GLC      +A  +F K++    + +
Sbjct: 432 FCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKMELD 491

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           +  Y+ +I+G+C       A +LF  +       GV  KP+  TY  +I GLCK+G + +
Sbjct: 492 IGIYNIIIHGMCNASKVDDAWDLFCSLPLK----GV--KPDVKTYNIMIGGLCKKGSLSE 545

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE------------------ 313
           A  LF +M++   +P+  TYN LI       D  ++  L+ E                  
Sbjct: 546 ADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDASTLRFALS 605

Query: 314 ----MMDQGVQPDVVTFNVIMDELC--KNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
               M+  G +PDV TF  ++   C  +N  + +A  L + M   G  PN  T++T++ G
Sbjct: 606 TLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKG 665

Query: 368 FCLTGRVNHAKELFVSMESMGCK 390
                 ++    +   M   GC+
Sbjct: 666 LLNGNMISQVPGVLDQMFERGCQ 688



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 82/313 (26%), Positives = 133/313 (42%), Gaps = 29/313 (9%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFC----------IFDYMLNMRPSPPPLTSFNLLF 114
            LE F K   +      +T  T  + FC          +F  M++ R  P  + S+ +L 
Sbjct: 406 GLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVAKELFQEMVSRRVRPD-IVSYKILL 464

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
             L      +  L +F+++  + +  D+  YNI+I+  C   +V   + +   +      
Sbjct: 465 DGLCDNGEPEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVK 524

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD   +  +I GLC +  + EA  LF K++  G  PN  TY+ LI      G    +  L
Sbjct: 525 PDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKL 584

Query: 235 FEEMAN-------GNGKFGVVC---------KPNTVTYTTIIDGLCKE--GFVDKAKELF 276
            EE+            +F +           +P+  T+TT++   C E    V  A  LF
Sbjct: 585 IEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLF 644

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             MK     P+VVTYN++I G    N  ++   +L +M ++G QP+ VT +  +  LCK 
Sbjct: 645 KNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQ 704

Query: 337 GKMDEASRLLELM 349
                A  LL  M
Sbjct: 705 DLHGSAILLLRKM 717



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 103/224 (45%), Gaps = 33/224 (14%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++   P + ++N++ G L K         LF+++   G  P+  TYNILI      G 
Sbjct: 518 LPLKGVKPDVKTYNIMIGGLCKKGSLSEADLLFRKMEEDGHSPNGCTYNILIRAHLGEGD 577

Query: 158 VSH-----------GFVV-----------LGRILRSCFTPDAVAFTSLIKGLCAE--SRI 193
            +            GF V           L R+L++   PD   FT+L++  C E  + +
Sbjct: 578 ATKSAKLIEEIKRCGFSVDASTLRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASV 637

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            +A  LF  +KA G KPNV+TY+T+I GL           + ++M      F   C+PN 
Sbjct: 638 YDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVPGVLDQM------FERGCQPNA 691

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS-LIH 296
           VT +T I GLCK+     A  + L  K +N N DV T    LIH
Sbjct: 692 VTKSTFISGLCKQDLHGSA--ILLLRKMENDNEDVTTKKKILIH 733



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 20/162 (12%)

Query: 44  SDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS 103
            D T +AKL E ++               RC  S    + A T   A      ML     
Sbjct: 576 GDATKSAKLIEEIK---------------RCGFS----VDASTLRFALSTLARMLKAGHE 616

Query: 104 PPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P   T   LL   CL +        +LFK + + G  P++ TYN +I        +S   
Sbjct: 617 PDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTYNTVIKGLLNGNMISQVP 676

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            VL ++      P+AV  ++ I GLC +     A  L  K++
Sbjct: 677 GVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKME 718


>gi|357502217|ref|XP_003621397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496412|gb|AES77615.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 550

 Score =  230 bits (586), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 123/336 (36%), Positives = 186/336 (55%), Gaps = 14/336 (4%)

Query: 63  RASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK- 121
           RAS   +L      S   D+     N     F  ML MRP+P  +  FN + G + K   
Sbjct: 19  RASFCHYLHPFIPKSNDFDV-----NNDVSSFHRMLRMRPTPS-IVEFNKILGSIVKANN 72

Query: 122 -HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
            HY T +SL  +L   G+ P + T+NIL+NC+C +G ++  F +  +IL+  + P  + F
Sbjct: 73  NHYTTAISLSHQLELKGITPTIVTFNILVNCYCHLGEMTFAFSIFAKILKLGYHPTTITF 132

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            +LI G+C   ++ EA      + A G   + ++Y TLINGLC+ G T  AL + +++  
Sbjct: 133 NTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLINGLCKIGETRAALQMLKKIE- 191

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                G +   + V Y  II+ LCK+  V  A +L+ +M  K I+PDVVT+NSLI GFC 
Sbjct: 192 -----GKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCV 246

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                EA  L  EM+ + + PDV TF++++D LCK+G +  A  +L +M+ +GV P+  T
Sbjct: 247 VGQLKEAFGLFHEMVLKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVT 306

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +S+LMDG+CL   VN AK +F +M  +G      SY
Sbjct: 307 YSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSY 342



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 168/303 (55%), Gaps = 13/303 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ ++  M+  R SP  +T FN L               LF  +    + PD+YT++IL
Sbjct: 217 DAYQLYSEMITKRISPDVVT-FNSLILGFCVVGQLKEAFGLFHEMVLKNINPDVYTFSIL 275

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G ++    +L  +++    PD V ++SL+ G C  + + +A  +F+ +   G 
Sbjct: 276 VDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGV 335

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCK 265
            P+  +Y+ +INGL +      AL+LF+EM          CK   P+TVTY ++IDGLCK
Sbjct: 336 APHAHSYNIMINGLGKIKMVDEALSLFKEMC---------CKGIAPDTVTYNSLIDGLCK 386

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +  A +L  +M +  I  D++TYNSLI   C  +  ++A  L+ ++ DQG+QP + T
Sbjct: 387 LGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKIKDQGIQPSMYT 446

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N+++D LCK G++  A  + + ++++G + N  T++ +++G C  G  N A+ L   ME
Sbjct: 447 YNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNIMINGLCKEGLFNEAEVLLSKME 506

Query: 386 SMG 388
           + G
Sbjct: 507 NNG 509



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/307 (30%), Positives = 156/307 (50%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF IF  +L +   P  +T FN L   +         L     + + G   D  +Y  LI
Sbjct: 113 AFSIFAKILKLGYHPTTIT-FNTLINGICLNGKLKEALHFHDHVIALGFHLDQVSYRTLI 171

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G       +L +I       D V +  +I  LC +  + +A  L++++      
Sbjct: 172 NGLCKIGETRAALQMLKKIEGKLVNTDVVMYNIIINSLCKDKAVSDAYQLYSEMITKRIS 231

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V+T+++LI G C  G    A  LF EM   N        P+  T++ ++D LCK+G +
Sbjct: 232 PDVVTFNSLILGFCVVGQLKEAFGLFHEMVLKN------INPDVYTFSILVDALCKDGNI 285

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +AK +   M  + + PDVVTY+SL+ G+C  N+ N+A  +   M   GV P   ++N++
Sbjct: 286 TRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIM 345

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ L K   +DEA  L + M  +G+ P+T T+++L+DG C  GR+++A +L   M + G 
Sbjct: 346 INGLGKIKMVDEALSLFKEMCCKGIAPDTVTYNSLIDGLCKLGRISYAWQLVDEMHNNGI 405

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 406 PADILTY 412



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/287 (31%), Positives = 154/287 (53%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N++   L K K       L+  + +  + PD+ T+N LI  FC +G++   F +   ++
Sbjct: 202 YNIIINSLCKDKAVSDAYQLYSEMITKRISPDVVTFNSLILGFCVVGQLKEAFGLFHEMV 261

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   F+ L+  LC +  I  A  +   +   G  P+V+TYS+L++G C      
Sbjct: 262 LKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSLMDGYCLVNEVN 321

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++F  M+    + GV   P+  +Y  +I+GL K   VD+A  LF +M  K I PD V
Sbjct: 322 KAKHVFSTMS----RLGVA--PHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGIAPDTV 375

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI G C     + A  L+ EM + G+  D++T+N ++D LCKN  +D+A  L++ +
Sbjct: 376 TYNSLIDGLCKLGRISYAWQLVDEMHNNGIPADILTYNSLIDVLCKNHHIDKAIALVKKI 435

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +G+ P+  T++ L+DG C  GR+ +A+++F  +   G     ++Y
Sbjct: 436 KDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTY 482



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 155/306 (50%), Gaps = 10/306 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F  M+ ++   P + +F++L   L K  +     ++   +   G+ PD+ TY+ L
Sbjct: 252 EAFGLFHEMV-LKNINPDVYTFSILVDALCKDGNITRAKNMLAVMMKQGVIPDVVTYSSL 310

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C +  V+    V   + R    P A ++  +I GL     + EA +LF ++   G 
Sbjct: 311 MDGYCLVNEVNKAKHVFSTMSRLGVAPHAHSYNIMINGLGKIKMVDEALSLFKEMCCKGI 370

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +TY++LI+GLC+ G    A  L +EM N NG        + +TY ++ID LCK   
Sbjct: 371 APDTVTYNSLIDGLCKLGRISYAWQLVDEMHN-NG-----IPADILTYNSLIDVLCKNHH 424

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +DKA  L  ++KD+ I P + TYN LI G C       A  +  +++ +G   +  T+N+
Sbjct: 425 IDKAIALVKKIKDQGIQPSMYTYNILIDGLCKGGRLKNAQDVFQDLLIKGYSVNAWTYNI 484

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK G  +EA  LL  M   G+ P+  T+ T++           A++L   M   G
Sbjct: 485 MINGLCKEGLFNEAEVLLSKMENNGIIPDAVTYETIIRALFRKDENEKAEKLLREMIIRG 544

Query: 389 ---CKH 391
              CKH
Sbjct: 545 LLLCKH 550


>gi|22128587|gb|AAM52339.1| fertility restorer [Petunia x hybrida]
          Length = 592

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 181/310 (58%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +F  M+  +P P  + SF+ L   L   KHY +V+S+F+ ++   +  D +  + 
Sbjct: 54  DDAFSLFRQMVTTKPLPSAV-SFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           ++N  C M R   GF VL    +     + V FT+LI+GL AE+++ +A  LF KL +  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C+P+ + Y T+++GLC+ GHT  A +L   M  G      + KP+T  Y  +ID  CK+
Sbjct: 173 ICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQG------ITKPDTCIYNIVIDAFCKD 226

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A  L  +MK KNI PD++TY SLI G    + W +   L +EM+   + PDV TF
Sbjct: 227 GMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTF 286

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D LCK GK+++A  ++  MI +GV PN  T++ +MDG+CL G++  A+ +F SM  
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMID 346

Query: 387 MGCKHTVFSY 396
            G +  + SY
Sbjct: 347 KGIEPDIISY 356



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 142/278 (51%), Gaps = 8/278 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           L+ G  A+ K  D V  LFK+L    +  PD   Y  +++  CK G     F +L  + +
Sbjct: 148 LIRGLFAENKVKDAV-HLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQ 206

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD   +  +I   C +  +  A +L  ++K     P++ITY++LI+GL +      
Sbjct: 207 GITKPDTCIYNIVIDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEK 266

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
              LF EM + N        P+  T+ ++IDGLCKEG V+ A+E+   M +K + P+ +T
Sbjct: 267 VRTLFLEMIHLN------IYPDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEIT 320

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN ++ G+C       A  +   M+D+G++PD++++  +++   +  KMD+A +L   + 
Sbjct: 321 YNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREIS 380

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             G+ P+  T S L+ G    GR   AK  F  M++ G
Sbjct: 381 QNGLKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAG 418



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 148/286 (51%), Gaps = 6/286 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++  L   L K   ++ V +LF  +    ++PD+ T+N +I+  CK G+V     
Sbjct: 245 PPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNIYPDVCTFNSVIDGLCKEGKVEDAEE 304

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++  ++     P+ + +  ++ G C   ++  A  +F  +   G +P++I+Y+ LING  
Sbjct: 305 IMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRIFDSMIDKGIEPDIISYTALINGYV 364

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  A+ LF E++  NG      KP+ VT + ++ GL + G  + AK  F +M+   
Sbjct: 365 EKKKMDKAMQLFREISQ-NG-----LKPSIVTCSVLLRGLFEVGRTECAKIFFDEMQAAG 418

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P++ T+ +L+ G+       EA     ++  +    ++  +  +++ LCKNGK+D+A 
Sbjct: 419 HIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQIYTAVINGLCKNGKLDKAH 478

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
              E + L G++P+  T++ ++ G+C  G ++ AK++   ME  GC
Sbjct: 479 ATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKMEDNGC 524



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  ++      P    +  +   L K  H      L + +      PD   YNI+
Sbjct: 160 DAVHLFKKLVRENICEPDEVMYGTVMDGLCKKGHTQKAFDLLRLMEQGITKPDTCIYNIV 219

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G +     +L  + +    PD + +TSLI GL   S+  +   LF ++     
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKNIPPDIITYTSLIDGLGKLSQWEKVRTLFLEMIHLNI 279

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V T++++I+GLC+ G    A    EE+     + GV  +PN +TY  ++DG C  G 
Sbjct: 280 YPDVCTFNSVIDGLCKEGKVEDA----EEIMTYMIEKGV--EPNEITYNVVMDGYCLRGQ 333

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A+ +F  M DK I PD+++Y +LI+G+      ++A  L  E+   G++P +VT +V
Sbjct: 334 MGRARRIFDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSV 393

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++  L + G+ + A    + M   G  PN  T  TL+ G+   G V  A   F  +E
Sbjct: 394 LLRGLFEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLE 450



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/275 (25%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L K    +    +   +   G+ P+  TYN++++ +C  G++     +
Sbjct: 281 PDVCTFNSVIDGLCKEGKVEDAEEIMTYMIEKGVEPNEITYNVVMDGYCLRGQMGRARRI 340

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD +++T+LI G   + ++ +A  LF ++   G KP+++T S L+ GL  
Sbjct: 341 FDSMIDKGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGLFE 400

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G T  A   F+EM A G+        PN  T+ T++ G  K G V++A   F +++ + 
Sbjct: 401 VGRTECAKIFFDEMQAAGH-------IPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            + ++  Y ++I+G C     ++A+    ++   G+ PDV+T+  ++   C+ G +DEA 
Sbjct: 454 EDTNIQIYTAVINGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAK 513

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +L  M   G  P+  T++ ++ GF  + +V+  K
Sbjct: 514 DMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMK 548



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/244 (26%), Positives = 119/244 (48%), Gaps = 7/244 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M++ +   P + S+  L     + K  D  + LF+ ++  GL P + T ++L+   
Sbjct: 340 IFDSMID-KGIEPDIISYTALINGYVEKKKMDKAMQLFREISQNGLKPSIVTCSVLLRGL 398

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            ++GR     +    +  +   P+     +L+ G      + EA + F KL+      N+
Sbjct: 399 FEVGRTECAKIFFDEMQAAGHIPNLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             Y+ +INGLC+ G    A   FE++        +   P+ +TYT +I G C+EG +D+A
Sbjct: 459 QIYTAVINGLCKNGKLDKAHATFEKLPL------IGLHPDVITYTAMISGYCQEGLLDEA 512

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           K++  +M+D    PD  TYN ++ GF  ++  +E    L E+  +    +  T  ++MD 
Sbjct: 513 KDMLRKMEDNGCLPDNRTYNVIVRGFFRSSKVSEMKAFLKEIAGKSFSFEAATVELLMDI 572

Query: 333 LCKN 336
           + ++
Sbjct: 573 IAED 576



 Score = 39.7 bits (91), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/113 (22%), Positives = 48/113 (42%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A  LF QM      P  V+++ L+    +   ++    +  E+    +  D    + 
Sbjct: 53  LDDAFSLFRQMVTTKPLPSAVSFSKLLKALVHMKHYSSVVSIFREIHKLRIPVDAFALST 112

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +++  C   + D    +L +   +G+  N  TF+TL+ G     +V  A  LF
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLF 165


>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
 gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
 gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
 gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
 gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 129/369 (34%), Positives = 198/369 (53%), Gaps = 51/369 (13%)

Query: 72  ERCKSSGQGDITAITPN---------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
           ER  +S  GD   I  N         +A  +F  M+  RP P  +  FN L   +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNK 98

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++ V+SL +++ + G+  DLYTY+I INCFC+  ++S    VL ++++  + PD V  +S
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 183 LIKGLCAESRIM-----------------------------------EAAALFTKLKAFG 207
           L+ G C   RI                                    EA AL  ++   G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+++TY T++NGLC+ G   +ALNL  +M           K N V + TIID LCK  
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALNLLNKMEAAR------IKANVVIFNTIIDSLCKYR 272

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A +LF +M+ K I P+VVTYNSLI+  C    W++A+ LL  M+++ + P+VVTFN
Sbjct: 273 HVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFN 332

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D   K GK+ EA +L E MI R ++P+T T++ L++GFC+  R++ AK++F  M S 
Sbjct: 333 ALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSK 392

Query: 388 GCKHTVFSY 396
            C   + +Y
Sbjct: 393 DCLPNIQTY 401



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/275 (31%), Positives = 144/275 (52%), Gaps = 6/275 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN +   L K +H +  + LF  + + G+ P++ TYN LINC C  GR S    +L  +L
Sbjct: 261 FNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNML 320

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F +LI     E +++EA  L  ++      P+ ITY+ LING C      
Sbjct: 321 EKKINPNVVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLD 380

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +F+ M + +      C PN  TY T+I+G CK   V+   ELF +M  + +  + V
Sbjct: 381 EAKQMFKFMVSKD------CLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTV 434

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY ++I GF  A D + A  +  +M+   V  D++T+++++  LC  GK+D A  + + +
Sbjct: 435 TYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYL 494

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
               +  N   ++T+++G C  G+V  A +LF S+
Sbjct: 495 QKSEMELNIFIYNTMIEGMCKAGKVGEAWDLFCSL 529



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 159/338 (47%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+ M   P   T   L+ G     K  + V +L  ++   G  PDL TY  
Sbjct: 170 SDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAV-ALVDQMVQRGCQPDLVTYGT 228

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  CK G +     +L ++  +    + V F ++I  LC    +  A  LFT+++  G
Sbjct: 229 VVNGLCKRGDIDLALNLLNKMEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKG 288

Query: 208 CKPNVITYSTLINGLCRTGH----TIVALNLFEEMANGN--------------GKFGVVC 249
            +PNV+TY++LIN LC  G     + +  N+ E+  N N              GK     
Sbjct: 289 IRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAFFKEGKLVEAE 348

Query: 250 K-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           K           P+T+TY  +I+G C    +D+AK++F  M  K+  P++ TYN+LI+GF
Sbjct: 349 KLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGF 408

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C      +   L  EM  +G+  + VT+  I+    + G  D A  + + M+   V  + 
Sbjct: 409 CKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDI 468

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+S L+ G C  G+++ A  +F  ++    +  +F Y
Sbjct: 469 MTYSILLHGLCSYGKLDTALVIFKYLQKSEMELNIFIY 506



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 133/277 (48%), Gaps = 10/277 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   ++NLL          D    +FK + S    P++ TYN LIN FCK  RV  
Sbjct: 357 RSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPNIQTYNTLINGFCKCKRVED 416

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +   + +     + V +T++I+G         A  +F ++ +     +++TYS L++
Sbjct: 417 GVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLH 476

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC  G    AL +F+ +     +       N   Y T+I+G+CK G V +A +LF  + 
Sbjct: 477 GLCSYGKLDTALVIFKYLQKSEMEL------NIFIYNTMIEGMCKAGKVGEAWDLFCSL- 529

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +I PDVVTYN++I G C      EA+ L  +M + G  P+  T+N ++    ++    
Sbjct: 530 --SIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRA 587

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++ L++ M   G   + ST S L+      GR++ +
Sbjct: 588 ASAELIKEMRSSGFVGDASTIS-LVTNMLHDGRLDKS 623



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/255 (26%), Positives = 129/255 (50%), Gaps = 11/255 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F +M++ +   P + ++N L     K K  +  + LF+ ++  GL  +  TY  
Sbjct: 380 DEAKQMFKFMVS-KDCLPNIQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTT 438

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  F + G      +V  +++ +    D + ++ L+ GLC+  ++  A  +F  L+   
Sbjct: 439 IIQGFFQAGDCDSAQMVFKQMVSNRVPTDIMTYSILLHGLCSYGKLDTALVIFKYLQKSE 498

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N+  Y+T+I G+C+ G    A +LF  ++          KP+ VTY T+I GLC + 
Sbjct: 499 MELNIFIYNTMIEGMCKAGKVGEAWDLFCSLS---------IKPDVVTYNTMISGLCSKR 549

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +LF +MK+    P+  TYN+LI       D   +  L+ EM   G   D  T +
Sbjct: 550 LLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAASAELIKEMRSSGFVGDASTIS 609

Query: 328 VIMDELCKNGKMDEA 342
           ++ + L  +G++D++
Sbjct: 610 LVTNML-HDGRLDKS 623


>gi|356561716|ref|XP_003549125.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62930,
           chloroplastic-like [Glycine max]
          Length = 556

 Score =  229 bits (585), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 126/309 (40%), Positives = 176/309 (56%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +F+ ML MRP PPP   FN +   L K + + T +SL K L+  G+  DL T NI
Sbjct: 51  NDAVALFNRMLLMRP-PPPTFQFNNILSSLVKMQRFPTAISLSKHLDFKGITSDLVTLNI 109

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +G+++  F VL  IL+  + PD +  T+LIKGLC    + +A      + A  
Sbjct: 110 LINCFCHLGQITLSFSVLATILKRGYHPDVITLTTLIKGLCLRGEVKKALKFHDDVVALE 169

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + I+Y TLINGLC+ G T  A+ L   +   +       KP+ V Y  IID LCK  
Sbjct: 170 FQLDRISYGTLINGLCKIGETKAAIQLMRNLEERS------IKPDVVMYNIIIDSLCKNK 223

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  L+ +M  K I P+VVTY +LI+GFC      EA  LL EM  + + PDV TF+
Sbjct: 224 LVGEACNLYSEMNAKQIYPNVVTYTTLIYGFCIMGCLIEAVALLNEMKLKNINPDVYTFS 283

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D L K GKM  A  +L +M+   V P+  T+++L+DG+ L   V HAK +F SM   
Sbjct: 284 ILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQS 343

Query: 388 GCKHTVFSY 396
           G    V SY
Sbjct: 344 GVTPGVQSY 352



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 155/277 (55%), Gaps = 12/277 (4%)

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           + GCL +       ++L   +    + PD+YT++ILI+   K G++    +VL  ++++ 
Sbjct: 256 IMGCLIEA------VALLNEMKLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAY 309

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD V + SL+ G    + +  A  +F  +   G  P V +Y+ +I+GLC+T     A+
Sbjct: 310 VKPDVVTYNSLVDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAI 369

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +LFEEM + N        PNT+T+ ++IDGLCK G +    +L  +M+D++   DV+TY+
Sbjct: 370 SLFEEMKHKN------VIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYS 423

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI   C     ++A  L  +M+ Q +QPD+ T+ +++D LCK G++  A  + + ++++
Sbjct: 424 SLIDALCKNCHLDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIK 483

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           G + +  T++ ++ GFC  G  + A  L   ME  GC
Sbjct: 484 GYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGC 520



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/253 (33%), Positives = 133/253 (52%), Gaps = 12/253 (4%)

Query: 105 PPLTSFNLL---FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P + ++N L   +  + + KH   V   F  +  +G+ P + +Y I+I+  CK   V   
Sbjct: 312 PDVVTYNSLVDGYFLVNEVKHAKYV---FNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEA 368

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +   +      P+ + F SLI GLC   RI     L  K++      +VITYS+LI+ 
Sbjct: 369 ISLFEEMKHKNVIPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQLADVITYSSLIDA 428

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+  H   A+ LF++M           +P+  TYT +IDGLCK G +  A+E+F  +  
Sbjct: 429 LCKNCHLDQAIALFKKMITQE------IQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLI 482

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K  + D+ TY  +I GFC A  ++EA  LL +M D G  P+ +TF++I+  L +  + D+
Sbjct: 483 KGYHLDIRTYTVMISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDK 542

Query: 342 ASRLLELMILRGV 354
           A +LL  MI RG+
Sbjct: 543 AEKLLREMIARGL 555



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 146/300 (48%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M  ++   P + +F++L   L K         +   +    + PD+ TYN L
Sbjct: 262 EAVALLNEM-KLKNINPDVYTFSILIDALGKEGKMKAAKIVLAVMMKAYVKPDVVTYNSL 320

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +  +  V H   V   + +S  TP   ++T +I GLC    + EA +LF ++K    
Sbjct: 321 VDGYFLVNEVKHAKYVFNSMAQSGVTPGVQSYTIMIDGLCKTKMVDEAISLFEEMKHKNV 380

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN IT+++LI+GLC++G      +L ++M + +         + +TY+++ID LCK   
Sbjct: 381 IPNTITFNSLIDGLCKSGRIAYVWDLVDKMRDRSQL------ADVITYSSLIDALCKNCH 434

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  LF +M  + I PD+ TY  LI G C       A  +   ++ +G   D+ T+ V
Sbjct: 435 LDQAIALFKKMITQEIQPDMYTYTILIDGLCKGGRLKIAQEVFQHLLIKGYHLDIRTYTV 494

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CK G  DEA  LL  M   G  PN  TF  ++         + A++L   M + G
Sbjct: 495 MISGFCKAGLFDEALALLSKMEDNGCIPNAITFDIIICALFEKDENDKAEKLLREMIARG 554


>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
 gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
           thaliana]
          Length = 596

 Score =  229 bits (584), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 197/367 (53%), Gaps = 50/367 (13%)

Query: 73  RCKSSGQGDITAITPN--------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           R  SSG GD   I  N        +A  +F  M+  RP  P +  FN L   +AK K +D
Sbjct: 6   RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFD 64

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 170
            V+SL +++    +   LYTYNILINCFC+  ++S    +LG++++              
Sbjct: 65  VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 124

Query: 171 ---------------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
                                  + PD + FT+LI GL   ++  EA AL  ++   GC+
Sbjct: 125 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 184

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN++TY  ++NGLC+ G T +ALNL  +M           + + V + TIID LCK   V
Sbjct: 185 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHV 238

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A  LF +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++ + P++VTFN +
Sbjct: 239 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 298

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D   K GK  EA +L + MI R ++P+  T+++L++GFC+  R++ AK++F  M S  C
Sbjct: 299 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 358

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 359 FPDVVTY 365



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 155/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L  ++
Sbjct: 225 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 284

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F +LI     E + +EA  L+  +      P++ TY++L+NG C      
Sbjct: 285 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 344

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FE M + +      C P+ VTY T+I G CK   V+   ELF +M  + +  D V
Sbjct: 345 KAKQMFEFMVSKD------CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 398

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LI G  +  D + A  +  +M+  GV PD++T+++++D LC NGK+++A  + + M
Sbjct: 399 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 458

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               +  +   ++T+++G C  G+V+   +LF S+   G K  V +Y
Sbjct: 459 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 505



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 8/283 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     K   +     L+  +    + PD++TYN L+N FC   R+     +
Sbjct: 290 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 349

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              ++ + CF PD V + +LIKG C   R+ +   LF ++   G   + +TY+TLI GL 
Sbjct: 350 FEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 408

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  +F++M +          P+ +TY+ ++DGLC  G ++KA E+F  M+   
Sbjct: 409 HDGDCDNAQKVFKQMVSDG------VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 462

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D+  Y ++I G C A   ++   L   +  +GV+P+VVT+N ++  LC    + EA 
Sbjct: 463 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 522

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            LL+ M   G  PN+ T++TL+      G    + EL   M S
Sbjct: 523 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 565



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + ++N L          D    +F+ + S   FPD+ TYN L
Sbjct: 310 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 368

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   +       D V +T+LI+GL  +     A  +F ++ + G 
Sbjct: 369 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 428

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TYS L++GLC  G    AL +F+ M     K  +        YTT+I+G+CK G 
Sbjct: 429 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI------YIYTTMIEGMCKAGK 482

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD   +LF  +  K + P+VVTYN++I G C      EA  LL +M + G  P+  T+N 
Sbjct: 483 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNT 542

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++    ++G    ++ L+  M
Sbjct: 543 LIRAHLRDGDKAASAELIREM 563


>gi|356522850|ref|XP_003530056.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Glycine max]
          Length = 545

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 124/309 (40%), Positives = 182/309 (58%), Gaps = 15/309 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F  ML MR +PP +  FN +    AK KHY TV+SL +RL    + PD +T NI
Sbjct: 45  DDALFQFHRMLCMRHTPP-IIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +G+++  F VL +IL+  + PD V  T+LIKGLC + ++ +A     KL A G
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + ++Y TLING+C+ G T  A+ L   +       G + +PN V Y TIID LCK  
Sbjct: 164 FRLDQVSYGTLINGVCKIGETRAAIQLLRRID------GRLTEPNVVMYNTIIDCLCKRK 217

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ +VVTY+++IHGFC      EA   L EM+ + + PDV  +N
Sbjct: 218 LVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTEALGFLNEMVLKAINPDVYIYN 277

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D L K GK+ EA  +L +++   + PN  T++TL+DG+        AK +F ++  M
Sbjct: 278 TLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGY--------AKHVFNAVGLM 329

Query: 388 GCKHTVFSY 396
           G    V+SY
Sbjct: 330 GVTPDVWSY 338



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 164/324 (50%), Gaps = 34/324 (10%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R + P +  +N +  CL K K      +LF  ++  G+  ++ TY+ +I+ FC +G+++ 
Sbjct: 197 RLTEPNVVMYNTIIDCLCKRKLVSEACNLFSEMSVKGISANVVTYSAIIHGFCIVGKLTE 256

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               L  ++     PD   + +L+  L  E ++ EA  +   +     KPNVITY+TLI+
Sbjct: 257 ALGFLNEMVLKAINPDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLID 316

Query: 221 G---------------------------LCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           G                           LC+      ALNL++EM   N        PNT
Sbjct: 317 GYAKHVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKN------MVPNT 370

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY ++IDGLCK G +  A +L  +M D+  + +V+TYNSLI+G C     ++A  L+ +
Sbjct: 371 VTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCKNGQLDKAIALINK 430

Query: 314 MMDQGVQPDVVTFNVIMDEL-CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           M DQG+QPD+ T N+++  L CK  ++  A  L + ++ +G +PN  T++ ++ G C  G
Sbjct: 431 MKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEG 490

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
            ++ A  L   ME  GC     ++
Sbjct: 491 LLDEAYALQSKMEDSGCSPNAITF 514



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/277 (32%), Positives = 138/277 (49%), Gaps = 34/277 (12%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG------------- 186
           PD+Y YN L++   K G+V     VL  I+++C  P+ + + +LI G             
Sbjct: 271 PDVYIYNTLVDALHKEGKVKEAKNVLAVIVKTCLKPNVITYNTLIDGYAKHVFNAVGLMG 330

Query: 187 --------------LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                         LC   R+ EA  L+ ++      PN +TY++LI+GLC++G    A 
Sbjct: 331 VTPDVWSYNIMINRLCKIKRVEEALNLYKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAW 390

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L +EM +           N +TY ++I+GLCK G +DKA  L  +MKD+ I PD+ T N
Sbjct: 391 DLIDEMHDRGHH------ANVITYNSLINGLCKNGQLDKAIALINKMKDQGIQPDMYTLN 444

Query: 293 SLIHGF-CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            L+HG  C       A  L  +++D+G  P+V T+N+I+   CK G +DEA  L   M  
Sbjct: 445 ILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNIIIYGHCKEGLLDEAYALQSKMED 504

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            G +PN  TF  ++      G  + A++L   M + G
Sbjct: 505 SGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARG 541



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/251 (33%), Positives = 131/251 (52%), Gaps = 15/251 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L    AK         +F  +   G+ PD+++YNI+IN  CK+ RV     +
Sbjct: 306 PNVITYNTLIDGYAK--------HVFNAVGLMGVTPDVWSYNIMINRLCKIKRVEEALNL 357

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ V + SLI GLC   RI  A  L  ++   G   NVITY++LINGLC+
Sbjct: 358 YKEMHQKNMVPNTVTYNSLIDGLCKSGRISYAWDLIDEMHDRGHHANVITYNSLINGLCK 417

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL-CKEGFVDKAKELFLQMKDKN 283
            G    A+ L  +M +         +P+  T   ++ GL CK   +  A+ LF  + DK 
Sbjct: 418 NGQLDKAIALINKMKDQG------IQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKG 471

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +P+V TYN +I+G C     +EA  L  +M D G  P+ +TF +I+  L + G+ D+A 
Sbjct: 472 YHPNVYTYNIIIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAE 531

Query: 344 RLLELMILRGV 354
           +LL  MI RG+
Sbjct: 532 KLLCEMIARGL 542



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 60/128 (46%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F +M      P ++ +N ++  F     +     L   +  + +QPD  T N+
Sbjct: 44  VDDALFQFHRMLCMRHTPPIIQFNKILDSFAKMKHYPTVVSLSRRLELKAIQPDFFTLNI 103

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C  G+++ A  +L  ++  G  P+T T +TL+ G CL G+V  A      + + G
Sbjct: 104 LINCFCHLGQINLAFSVLSKILKWGYQPDTVTLTTLIKGLCLKGQVKKALHFHDKLLAQG 163

Query: 389 CKHTVFSY 396
            +    SY
Sbjct: 164 FRLDQVSY 171



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/120 (28%), Positives = 56/120 (46%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + + M +    P   T   LL G L K K       LF+ L   G  P++YTYNI
Sbjct: 422 DKAIALINKMKDQGIQPDMYTLNILLHGLLCKGKRLKNAQGLFQDLLDKGYHPNVYTYNI 481

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I   CK G +   + +  ++  S  +P+A+ F  +I  L  +    +A  L  ++ A G
Sbjct: 482 IIYGHCKEGLLDEAYALQSKMEDSGCSPNAITFKIIICALLEKGETDKAEKLLCEMIARG 541


>gi|79369396|ref|NP_176481.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806495|sp|Q9LQ14.2|PPR96_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62930, chloroplastic; Flags: Precursor
 gi|332195902|gb|AEE34023.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 629

 Score =  229 bits (583), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  RP  P +  FN L   +AK   +D V+SL +R+ +  +  DLY+YNI
Sbjct: 62  DDAVDLFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-------------- 193
           LINCFC+  ++     VLG++++  + PD V  +SL+ G C   RI              
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 180

Query: 194 ---------------------MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                 EA AL  ++ A GC+P++ TY T++NGLC+ G   +AL
Sbjct: 181 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 240

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L ++M  G        + + V YTTIID LC    V+ A  LF +M +K I P+VVTYN
Sbjct: 241 SLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 294

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI   C    W++A+ LL +M+++ + P+VVTF+ ++D   K GK+ EA +L + MI R
Sbjct: 295 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 354

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++P+  T+S+L++GFC+  R++ AK +F  M S  C   V +Y
Sbjct: 355 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 398



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 157/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +  +   L   K+ +  L+LF  +++ G+ P++ TYN LI C C  GR S    +L  ++
Sbjct: 258 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 317

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F++LI     E +++EA  L+ ++      P++ TYS+LING C      
Sbjct: 318 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 377

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++FE M + +      C PN VTY T+I G CK   V++  ELF +M  + +  + V
Sbjct: 378 EAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 431

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G   A D + A  +  +M+  GV PD++T+++++D LCK GK+++A  + E +
Sbjct: 432 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 491

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+  T++ +++G C  G+V    +LF S+   G K  V  Y
Sbjct: 492 QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 538



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 156/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +F  M N +   P + ++N L  CL     +     L   +    + P++ T++ 
Sbjct: 272 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 330

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   +++    PD   ++SLI G C   R+ EA  +F  + +  
Sbjct: 331 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 390

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+TLI G C+       + LF EM+   G  G     NTVTY T+I GL + G
Sbjct: 391 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVG-----NTVTYNTLIQGLFQAG 444

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+++F +M    + PD++TY+ L+ G C      +A  +   +    ++PD+ T+N
Sbjct: 445 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 504

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +CK GK+++   L   + L+GV PN   ++T++ GFC  G    A  LF  M+  
Sbjct: 505 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 564

Query: 388 G 388
           G
Sbjct: 565 G 565



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 12/291 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC---KMGR 157
           R   P + +F+ L     K         L+  +    + PD++TY+ LIN FC   ++  
Sbjct: 319 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 378

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++  I + CF P+ V + +LIKG C   R+ E   LF ++   G   N +TY+T
Sbjct: 379 AKHMFELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 435

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI GL + G   +A  +F++M +     GV   P+ +TY+ ++DGLCK G ++KA  +F 
Sbjct: 436 LIQGLFQAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCKYGKLEKALVVFE 489

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   + PD+ TYN +I G C A    +   L   +  +GV+P+V+ +  ++   C+ G
Sbjct: 490 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 549

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +EA  L   M   G  PN+ T++TL+      G    + EL   M S G
Sbjct: 550 LKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 600



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FP++ TYN L
Sbjct: 343 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   + +     + V + +LI+GL        A  +F K+ + G 
Sbjct: 402 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITYS L++GLC+ G    AL +FE +           +P+  TY  +I+G+CK G 
Sbjct: 462 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPDIYTYNIMIEGMCKAGK 515

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + P+V+ Y ++I GFC      EA+ L  EM + G  P+  T+N 
Sbjct: 516 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNT 575

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    ++G    ++ L++ M   G   + ST S +++
Sbjct: 576 LIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 613



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A +LF +M      P +V +N L+      N ++    L   M +  +  D+ ++N+
Sbjct: 61  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 120

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +++  C+  ++  A  +L  M+  G  P+  T S+L++G+C   R++ A  L   M
Sbjct: 121 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 176


>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
 gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
 gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 634

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 128/367 (34%), Positives = 197/367 (53%), Gaps = 50/367 (13%)

Query: 73  RCKSSGQGDITAITPN--------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           R  SSG GD   I  N        +A  +F  M+  RP  P +  FN L   +AK K +D
Sbjct: 44  RAFSSGSGDYREILRNGLHDMKLDDAIGLFGGMVKSRP-LPSIVEFNKLLSAIAKMKKFD 102

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR-------------- 170
            V+SL +++    +   LYTYNILINCFC+  ++S    +LG++++              
Sbjct: 103 VVISLGEKMQRLEIVHGLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLL 162

Query: 171 ---------------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
                                  + PD + FT+LI GL   ++  EA AL  ++   GC+
Sbjct: 163 NGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQ 222

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN++TY  ++NGLC+ G T +ALNL  +M           + + V + TIID LCK   V
Sbjct: 223 PNLVTYGVVVNGLCKRGDTDLALNLLNKMEAAK------IEADVVIFNTIIDSLCKYRHV 276

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A  LF +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++ + P++VTFN +
Sbjct: 277 DDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVTFNAL 336

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D   K GK  EA +L + MI R ++P+  T+++L++GFC+  R++ AK++F  M S  C
Sbjct: 337 IDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDC 396

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 397 FPDVVTY 403



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 155/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L  ++
Sbjct: 263 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 322

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F +LI     E + +EA  L+  +      P++ TY++L+NG C      
Sbjct: 323 EKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLD 382

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FE M + +      C P+ VTY T+I G CK   V+   ELF +M  + +  D V
Sbjct: 383 KAKQMFEFMVSKD------CFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 436

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LI G  +  D + A  +  +M+  GV PD++T+++++D LC NGK+++A  + + M
Sbjct: 437 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 496

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               +  +   ++T+++G C  G+V+   +LF S+   G K  V +Y
Sbjct: 497 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 543



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 8/283 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     K   +     L+  +    + PD++TYN L+N FC   R+     +
Sbjct: 328 PNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSIDPDIFTYNSLVNGFCMHDRLDKAKQM 387

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              ++ + CF PD V + +LIKG C   R+ +   LF ++   G   + +TY+TLI GL 
Sbjct: 388 FEFMVSKDCF-PDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 446

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  +F++M +          P+ +TY+ ++DGLC  G ++KA E+F  M+   
Sbjct: 447 HDGDCDNAQKVFKQMVSDG------VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 500

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D+  Y ++I G C A   ++   L   +  +GV+P+VVT+N ++  LC    + EA 
Sbjct: 501 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 560

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            LL+ M   G  PN+ T++TL+      G    + EL   M S
Sbjct: 561 ALLKKMKEDGPLPNSGTYNTLIRAHLRDGDKAASAELIREMRS 603



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 131/261 (50%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + ++N L          D    +F+ + S   FPD+ TYN L
Sbjct: 348 EAEKLYDDMIK-RSIDPDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTL 406

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   +       D V +T+LI+GL  +     A  +F ++ + G 
Sbjct: 407 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 466

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TYS L++GLC  G    AL +F+ M     K  +        YTT+I+G+CK G 
Sbjct: 467 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI------YIYTTMIEGMCKAGK 520

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD   +LF  +  K + P+VVTYN++I G C      EA  LL +M + G  P+  T+N 
Sbjct: 521 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPNSGTYNT 580

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++    ++G    ++ L+  M
Sbjct: 581 LIRAHLRDGDKAASAELIREM 601


>gi|334183590|ref|NP_176479.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179661|sp|Q9LQ16.1|PPR94_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62910
 gi|8493578|gb|AAF75801.1|AC011000_4 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats [Arabidopsis thaliana]
 gi|332195899|gb|AEE34020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 632

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 127/369 (34%), Positives = 198/369 (53%), Gaps = 51/369 (13%)

Query: 72  ERCKSSGQGDITAITPN---------EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH 122
           ER  +S  GD   I  N         +A  +F  M+  RP P  +  FN L   +AK   
Sbjct: 40  ERSFASASGDYREILRNRLSDIIKVDDAVDLFGDMVKSRPFPS-IVEFNKLLSAVAKMNK 98

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++ V+SL +++ + G+  DLYTY+I INCFC+  ++S    VL ++++  + PD V  +S
Sbjct: 99  FELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSS 158

Query: 183 LIKGLCAESRI-----------------------------------MEAAALFTKLKAFG 207
           L+ G C   RI                                    EA AL  ++   G
Sbjct: 159 LLNGYCHSKRISDAVALVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG 218

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+++TY T++NGLC+ G   +AL+L ++M  G        + + V Y TIIDGLCK  
Sbjct: 219 CQPDLVTYGTVVNGLCKRGDIDLALSLLKKMEKGK------IEADVVIYNTIIDGLCKYK 272

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  LF +M +K I PDV TY+SLI   C    W++A+ LL +M+++ + P+VVTF+
Sbjct: 273 HMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFS 332

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D   K GK+ EA +L + MI R ++P+  T+S+L++GFC+  R++ AK +F  M S 
Sbjct: 333 ALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISK 392

Query: 388 GCKHTVFSY 396
            C   V +Y
Sbjct: 393 DCFPNVVTY 401



 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 163/287 (56%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K KH D  L+LF  +++ G+ PD++TY+ LI+C C  GR S    +L  ++
Sbjct: 261 YNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDMI 320

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F++LI     E +++EA  L+ ++      P++ TYS+LING C      
Sbjct: 321 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 380

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++FE M + +      C PN VTY+T+I G CK   V++  ELF +M  + +  + V
Sbjct: 381 EAKHMFELMISKD------CFPNVVTYSTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 434

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LIHGF  A D + A  +  +M+  GV P+++T+N+++D LCKNGK+ +A  + E +
Sbjct: 435 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 494

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+  T++ +++G C  G+V    ELF ++   G    V +Y
Sbjct: 495 QRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKGVSPNVIAY 541



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 145/289 (50%), Gaps = 8/289 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FP++ TY+ L
Sbjct: 346 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTL 404

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   + +     + V +T+LI G         A  +F ++ + G 
Sbjct: 405 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGV 464

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY+ L++GLC+ G    A+ +FE +           +P+  TY  +I+G+CK G 
Sbjct: 465 HPNILTYNILLDGLCKNGKLAKAMVVFEYLQRS------TMEPDIYTYNIMIEGMCKAGK 518

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   ELF  +  K ++P+V+ YN++I GFC      EA+ LL +M + G  P+  T+N 
Sbjct: 519 VEDGWELFCNLSLKGVSPNVIAYNTMISGFCRKGSKEEADSLLKKMKEDGPLPNSGTYNT 578

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++    ++G  + ++ L++ M   G   + ST   L+      GR++ +
Sbjct: 579 LIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 626


>gi|8493580|gb|AAF75803.1|AC011000_6 Contains weak similarity to leaf protein from Ipomea nil gb|D85101
           and contains a RepB PF|01051 protein and multiple PPR
           PF|01535 repeats [Arabidopsis thaliana]
          Length = 613

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/344 (35%), Positives = 191/344 (55%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  RP  P +  FN L   +AK   +D V+SL +R+ +  +  DLY+YNI
Sbjct: 46  DDAVDLFGEMVQSRP-LPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI-------------- 193
           LINCFC+  ++     VLG++++  + PD V  +SL+ G C   RI              
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMFVME 164

Query: 194 ---------------------MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                 EA AL  ++ A GC+P++ TY T++NGLC+ G   +AL
Sbjct: 165 YQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLAL 224

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L ++M  G        + + V YTTIID LC    V+ A  LF +M +K I P+VVTYN
Sbjct: 225 SLLKKMEKGK------IEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 278

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI   C    W++A+ LL +M+++ + P+VVTF+ ++D   K GK+ EA +L + MI R
Sbjct: 279 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 338

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++P+  T+S+L++GFC+  R++ AK +F  M S  C   V +Y
Sbjct: 339 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 382



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 93/287 (32%), Positives = 157/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +  +   L   K+ +  L+LF  +++ G+ P++ TYN LI C C  GR S    +L  ++
Sbjct: 242 YTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMI 301

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F++LI     E +++EA  L+ ++      P++ TYS+LING C      
Sbjct: 302 ERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLD 361

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++FE M + +      C PN VTY T+I G CK   V++  ELF +M  + +  + V
Sbjct: 362 EAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTV 415

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G   A D + A  +  +M+  GV PD++T+++++D LCK GK+++A  + E +
Sbjct: 416 TYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYL 475

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+  T++ +++G C  G+V    +LF S+   G K  V  Y
Sbjct: 476 QKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIY 522



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 156/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +F  M N +   P + ++N L  CL     +     L   +    + P++ T++ 
Sbjct: 256 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 314

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   +++    PD   ++SLI G C   R+ EA  +F  + +  
Sbjct: 315 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 374

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+TLI G C+       + LF EM+   G  G     NTVTY T+I GL + G
Sbjct: 375 CFPNVVTYNTLIKGFCKAKRVEEGMELFREMSQ-RGLVG-----NTVTYNTLIQGLFQAG 428

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+++F +M    + PD++TY+ L+ G C      +A  +   +    ++PD+ T+N
Sbjct: 429 DCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVVFEYLQKSKMEPDIYTYN 488

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +CK GK+++   L   + L+GV PN   ++T++ GFC  G    A  LF  M+  
Sbjct: 489 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKED 548

Query: 388 G 388
           G
Sbjct: 549 G 549



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 147/291 (50%), Gaps = 12/291 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC---KMGR 157
           R   P + +F+ L     K         L+  +    + PD++TY+ LIN FC   ++  
Sbjct: 303 RKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDE 362

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++  I + CF P+ V + +LIKG C   R+ E   LF ++   G   N +TY+T
Sbjct: 363 AKHMFELM--ISKDCF-PNVVTYNTLIKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNT 419

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI GL + G   +A  +F++M +     GV   P+ +TY+ ++DGLCK G ++KA  +F 
Sbjct: 420 LIQGLFQAGDCDMAQKIFKKMVSD----GV--PPDIITYSILLDGLCKYGKLEKALVVFE 473

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   + PD+ TYN +I G C A    +   L   +  +GV+P+V+ +  ++   C+ G
Sbjct: 474 YLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKG 533

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +EA  L   M   G  PN+ T++TL+      G    + EL   M S G
Sbjct: 534 LKEEADALFREMKEDGTLPNSGTYNTLIRARLRDGDKAASAELIKEMRSCG 584



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FP++ TYN L
Sbjct: 327 EAEKLYDEMIK-RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTL 385

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   + +     + V + +LI+GL        A  +F K+ + G 
Sbjct: 386 IKGFCKAKRVEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGV 445

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITYS L++GLC+ G    AL +FE +           +P+  TY  +I+G+CK G 
Sbjct: 446 PPDIITYSILLDGLCKYGKLEKALVVFEYLQKSK------MEPDIYTYNIMIEGMCKAGK 499

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + P+V+ Y ++I GFC      EA+ L  EM + G  P+  T+N 
Sbjct: 500 VEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNT 559

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    ++G    ++ L++ M   G   + ST S +++
Sbjct: 560 LIRARLRDGDKAASAELIKEMRSCGFVGDASTISMVIN 597



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 58/116 (50%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A +LF +M      P +V +N L+      N ++    L   M +  +  D+ ++N+
Sbjct: 45  LDDAVDLFGEMVQSRPLPSIVEFNKLLSAIAKMNKFDLVISLGERMQNLRISYDLYSYNI 104

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +++  C+  ++  A  +L  M+  G  P+  T S+L++G+C   R++ A  L   M
Sbjct: 105 LINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQM 160


>gi|15221674|ref|NP_176496.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169918|sp|Q9CAN5.1|PPR98_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63080, mitochondrial; Flags: Precursor
 gi|12323262|gb|AAG51614.1|AC010795_18 unknown protein; 41955-40111 [Arabidopsis thaliana]
 gi|332195930|gb|AEE34051.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 614

 Score =  228 bits (582), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 191/344 (55%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M+  RP P  +  F+ L   +AK K +D V+S  +++   G+  +LYTYNI
Sbjct: 47  DEAVDLFGEMVKSRPFPS-IVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNI 105

Query: 148 LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 172
           +INC C+  ++S    +LG++++                                     
Sbjct: 106 MINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 165

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + PD V FT+L+ GL   ++  EA AL  ++   GC+P+++TY  +INGLC+ G   +AL
Sbjct: 166 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 225

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           NL  +M  G        + + V Y+T+ID LCK   VD A  LF +M +K I PDV TY+
Sbjct: 226 NLLNKMEKGK------IEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYS 279

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI   C    W++A+ LL +M+++ + P+VVTFN ++D   K GK+ EA +L + MI R
Sbjct: 280 SLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQR 339

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++PN  T+++L++GFC+  R++ A+++F  M S  C   V +Y
Sbjct: 340 SIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTY 383



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 98/287 (34%), Positives = 159/287 (55%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ +   L K +H D  L+LF  +++ G+ PD++TY+ LI+C C  GR S    +L  +L
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F SLI     E +++EA  LF ++      PN++TY++LING C      
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +F  M + +      C P+ VTY T+I+G CK   V    ELF  M  + +  + V
Sbjct: 363 EAQQIFTLMVSKD------CLPDVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTV 416

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LIHGF  A+D + A  +  +M+  GV P+++T+N ++D LCKNGK+++A  + E +
Sbjct: 417 TYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 476

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+  T++ + +G C  G+V    +LF S+   G K  V +Y
Sbjct: 477 QKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKGVKPDVIAY 523



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 137/278 (49%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  R   P + ++N L          D    +F  + S    PD+ TYN L
Sbjct: 328 EAEKLFDEMIQ-RSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTL 386

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN FCK  +V  G  +   + R     + V +T+LI G    S    A  +F ++ + G 
Sbjct: 387 INGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGV 446

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY+TL++GLC+ G    A+ +FE +           +P+  TY  + +G+CK G 
Sbjct: 447 HPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQKSK------MEPDIYTYNIMSEGMCKAGK 500

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + PDV+ YN++I GFC      EA  L I+M + G  PD  T+N 
Sbjct: 501 VEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKEDGPLPDSGTYNT 560

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    ++G    ++ L++ M       + ST+  + D
Sbjct: 561 LIRAHLRDGDKAASAELIKEMRSCRFAGDASTYGLVTD 598


>gi|242069877|ref|XP_002450215.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
 gi|241936058|gb|EES09203.1| hypothetical protein SORBIDRAFT_05g002040 [Sorghum bicolor]
          Length = 862

 Score =  228 bits (581), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 130/344 (37%), Positives = 190/344 (55%), Gaps = 18/344 (5%)

Query: 61  KDRA-SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           +DR   LE+ + +R +S   G       ++A  +FD +L     P  + +FN L   +A+
Sbjct: 9   RDRCLELERVIADRARSGSLG------IDDALKLFDELLP-HARPASVRAFNHLLNVVAR 61

Query: 120 TKHYDT---VLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
            +   T    +SLF R+    S  + PDL TY+IL  CFC++GR+ HGF   G IL++ +
Sbjct: 62  ARCSSTSELAVSLFNRMARACSNKVRPDLCTYSILTGCFCRLGRIEHGFAAFGLILKTGW 121

Query: 174 TPDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             + V    L+ GLC   R+ EA   L  ++  FGC PNV++ +TL+ GLC       AL
Sbjct: 122 RVNEVVINQLLNGLCDAKRVDEAMDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEAL 181

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L   MA   G     C PN VTY TIIDGLCK   VD+A+ +   M DK +  DVVTY+
Sbjct: 182 ELLHTMAEDGGGN---CTPNVVTYNTIIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYS 238

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           ++I G C A   + A  +L  M+D+GV+PDVVT+N I+D LCK   +D A  +L+ MI +
Sbjct: 239 TIIDGLCKAQAVDRAEGVLQHMIDKGVKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDK 298

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GV P+  T++T++DG C    V+ A  +   M     K  + +Y
Sbjct: 299 GVKPDVVTYNTIIDGLCKAQAVDRADGVLQHMIDKDVKPDIQTY 342



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/301 (34%), Positives = 155/301 (51%), Gaps = 12/301 (3%)

Query: 94  FDYMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTYNI 147
            D +L   P     P + S N L   L   K  +  L L   +   G     P++ TYN 
Sbjct: 145 MDILLRRMPEFGCMPNVVSCNTLLKGLCNEKRVEEALELLHTMAEDGGGNCTPNVVTYNT 204

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK   V     VL  ++      D V ++++I GLC    +  A  +   +   G
Sbjct: 205 IIDGLCKAQAVDRAEGVLQHMIDKGVKLDVVTYSTIIDGLCKAQAVDRAEGVLQHMIDKG 264

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V+TY+T+I+GLC+      A  + + M +     GV  KP+ VTY TIIDGLCK  
Sbjct: 265 VKPDVVTYNTIIDGLCKAQAVDRAEGVLQHMIDK----GV--KPDVVTYNTIIDGLCKAQ 318

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A  +   M DK++ PD+ TYN LIHG+    +W E    L EM  +G+ PDVVT++
Sbjct: 319 AVDRADGVLQHMIDKDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVVTYS 378

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCKNGK  EA ++   MI +G+ PN + +  L+ G+   G +    +L   M + 
Sbjct: 379 LLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVAN 438

Query: 388 G 388
           G
Sbjct: 439 G 439



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 161/322 (50%), Gaps = 41/322 (12%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN++    AK    D  + +F R++  GL PD+ TY ILI+  CK+GRV    +   +++
Sbjct: 447 FNIVLCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMI 506

Query: 170 RSCFTPDAVAFTSLIKGLCA-----------------------------------ESRIM 194
               TP++V F SL+ GLC                                    E ++M
Sbjct: 507 NDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNVVFFNTIMCNLCNEGQVM 566

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
            A  L   ++  G +PNVI+Y+TLI G C  G T  A  L + M +      V  KP+ +
Sbjct: 567 VAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVS------VGLKPDLI 620

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           +Y T++ G CK G +D A  LF +M  K + P  VTY++++ G  +   ++EA  L + M
Sbjct: 621 SYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNM 680

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +  G Q D+ T+N+I++ LCK   +DEA ++ + +  + + PN  TF+ ++D     GR 
Sbjct: 681 IKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVLFKGGRK 740

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +LF S+ S G    V +Y
Sbjct: 741 KDAMDLFASIPSHGLVPNVVTY 762



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/313 (31%), Positives = 162/313 (51%), Gaps = 7/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A   + A  +  +M++ +   P + ++N L      T  +  V+   + + + GL PD+ 
Sbjct: 317 AQAVDRADGVLQHMID-KDVKPDIQTYNCLIHGYLSTGEWKEVVRRLEEMYARGLDPDVV 375

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY++L++  CK G+ +    +   ++R    P+   +  L+ G  A   I +   L   +
Sbjct: 376 TYSLLLDYLCKNGKCTEARKIFYCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLM 435

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            A G  PN   ++ ++    +      A+++F  M+    + G+   P+ VTY  +ID L
Sbjct: 436 VANGISPNNYIFNIVLCAYAKKAMIDEAMHIFSRMS----QHGL--SPDVVTYGILIDAL 489

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G VD A   F QM +  + P+ V +NSL++G C  + W +A  L  EM DQGV+P+V
Sbjct: 490 CKLGRVDDAVLKFNQMINDGVTPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQGVRPNV 549

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V FN IM  LC  G++  A RL++ M   GV PN  +++TL+ G CL GR + A +L   
Sbjct: 550 VFFNTIMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDV 609

Query: 384 MESMGCKHTVFSY 396
           M S+G K  + SY
Sbjct: 610 MVSVGLKPDLISY 622



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF Y +  +   P +T + +L    A       +  L   + + G+ P+ Y +NI+
Sbjct: 392 EARKIF-YCMIRKGIKPNVTIYGILLHGYAARGAIADLTDLLDLMVANGISPNNYIFNIV 450

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + K   +     +  R+ +   +PD V +  LI  LC   R+ +A   F ++   G 
Sbjct: 451 LCAYAKKAMIDEAMHIFSRMSQHGLSPDVVTYGILIDALCKLGRVDDAVLKFNQMINDGV 510

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN + +++L+ GLC       A  LF EM +     GV  +PN V + TI+  LC EG 
Sbjct: 511 TPNSVVFNSLVYGLCTVDRWEKAEELFFEMWDQ----GV--RPNVVFFNTIMCNLCNEGQ 564

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V  A+ L   M+   + P+V++YN+LI G C A   +EA  LL  M+  G++PD+++++ 
Sbjct: 565 VMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDT 624

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CK G++D A  L   M+ +GV P   T+ST++ G   T R + AKEL+++M   G
Sbjct: 625 LLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSG 684

Query: 389 CKHTVFSY 396
            +  +++Y
Sbjct: 685 QQWDIYTY 692



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 132/276 (47%), Gaps = 6/276 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L G        D    L   + S GL PDL +Y+ L+  +CK GR+ + + +
Sbjct: 582 PNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVGLKPDLISYDTLLRGYCKTGRIDNAYCL 641

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR   TP AV ++++++GL    R  EA  L+  +   G + ++ TY+ ++NGLC+
Sbjct: 642 FREMLRKGVTPGAVTYSTILQGLFHTRRFSEAKELYLNMIKSGQQWDIYTYNIILNGLCK 701

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T     A  +F+ + + +       +PN +T+T +ID L K G    A +LF  +    +
Sbjct: 702 TNCVDEAFKIFQSLCSKD------LRPNIITFTIMIDVLFKGGRKKDAMDLFASIPSHGL 755

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTY  ++         +E + L + M   G  PD V  N I+  L   G++  A  
Sbjct: 756 VPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDSVMLNAIIRSLLGRGEIMRAGA 815

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            L  +     +   ST S L+  F      NHAK L
Sbjct: 816 YLSKIDEMNFSLEASTTSLLISLFSREEYKNHAKSL 851



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/329 (23%), Positives = 145/329 (44%), Gaps = 30/329 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P  +   +L++G L     ++    LF  +   G+ P++  +N 
Sbjct: 496 DDAVLKFNQMINDGVTPNSVVFNSLVYG-LCTVDRWEKAEELFFEMWDQGVRPNVVFFNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C  G+V     ++  + R    P+ +++ +LI G C   R  EAA L   + + G
Sbjct: 555 IMCNLCNEGQVMVAQRLIDSMERVGVRPNVISYNTLIGGHCLAGRTDEAAQLLDVMVSVG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC------------------ 249
            KP++I+Y TL+ G C+TG    A  LF EM       G V                   
Sbjct: 615 LKPDLISYDTLLRGYCKTGRIDNAYCLFREMLRKGVTPGAVTYSTILQGLFHTRRFSEAK 674

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      + +  TY  I++GLCK   VD+A ++F  +  K++ P+++T+  +I   
Sbjct: 675 ELYLNMIKSGQQWDIYTYNIILNGLCKTNCVDEAFKIFQSLCSKDLRPNIITFTIMIDVL 734

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                  +A  L   +   G+ P+VVT+ ++M  + + G +DE   L   M   G  P++
Sbjct: 735 FKGGRKKDAMDLFASIPSHGLVPNVVTYCIMMKNIIQEGLLDEFDNLFLAMEKSGCTPDS 794

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESM 387
              + ++      G +  A      ++ M
Sbjct: 795 VMLNAIIRSLLGRGEIMRAGAYLSKIDEM 823


>gi|356561401|ref|XP_003548970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
           mitochondrial-like [Glycine max]
          Length = 447

 Score =  227 bits (579), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 113/303 (37%), Positives = 186/303 (61%), Gaps = 7/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+ +L +R +PP +  F  + G L K KHY T +SL +++   G+ P+L T NILINCFC
Sbjct: 53  FNRLLLVRHTPP-IIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVTLNILINCFC 111

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
            +G+++  F VLG+IL+  + PD +   +L+KGLC +  +  +     K+ A G + N +
Sbjct: 112 HLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQV 171

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TL+NGLC+ G T  A+ L   + + +       +P+ V Y+TIIDGLCK+  V++A 
Sbjct: 172 SYGTLLNGLCKIGETRCAVKLLRMIEDRS------TRPDVVMYSTIIDGLCKDKIVNQAY 225

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           + F +M  + I P+V+TY++LI GFC A     A  LL EM+ + + P+V T+N+++D L
Sbjct: 226 DFFSEMNARGIFPNVITYSTLIWGFCLAGQLMGAFSLLNEMILKNINPNVYTYNILIDAL 285

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK GK+ EA +LL  M  +G   +  T+++++DG C +  ++ A  LF+ M+  G +   
Sbjct: 286 CKEGKVKEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNK 345

Query: 394 FSY 396
           ++Y
Sbjct: 346 YTY 348



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/300 (32%), Positives = 153/300 (51%), Gaps = 7/300 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  +T  N L   L         L    ++ + G   +  +Y  L+
Sbjct: 119 SFSVLGKILKLGYQPDTIT-LNTLMKGLCLKGEVKRSLHFHDKVVAQGFQMNQVSYGTLL 177

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G       +L  I      PD V ++++I GLC +  + +A   F+++ A G  
Sbjct: 178 NGLCKIGETRCAVKLLRMIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIF 237

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNVITYSTLI G C  G  + A +L  EM   N        PN  TY  +ID LCKEG V
Sbjct: 238 PNVITYSTLIWGFCLAGQLMGAFSLLNEMILKN------INPNVYTYNILIDALCKEGKV 291

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +AK+L  +M  K    DVVTYNS++ G C + + ++A  L ++M   G+QP+  T+  +
Sbjct: 292 KEAKKLLAEMHHKGQPADVVTYNSVLDGLCKSQNLDKATALFMKMKKWGIQPNKYTYTAL 351

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK G++  A +L + ++++G   +  T++ ++ G C  G  + A  +   ME  GC
Sbjct: 352 IDGLCKGGRLKNAQKLFQHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGC 411



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/258 (32%), Positives = 142/258 (55%), Gaps = 6/258 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R + P +  ++ +   L K K  +     F  +N+ G+FP++ TY+ LI  FC  G
Sbjct: 195 MIEDRSTRPDVVMYSTIIDGLCKDKIVNQAYDFFSEMNARGIFPNVITYSTLIWGFCLAG 254

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  ++     P+   +  LI  LC E ++ EA  L  ++   G   +V+TY+
Sbjct: 255 QLMGAFSLLNEMILKNINPNVYTYNILIDALCKEGKVKEAKKLLAEMHHKGQPADVVTYN 314

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++++GLC++ +   A  LF +M     K+G+  +PN  TYT +IDGLCK G +  A++LF
Sbjct: 315 SVLDGLCKSQNLDKATALFMKMK----KWGI--QPNKYTYTALIDGLCKGGRLKNAQKLF 368

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             +  K    DV TYN +I G C    +++A  +  +M D G  P+ VTF++I+  L + 
Sbjct: 369 QHLLVKGCCIDVRTYNVMISGLCKEGMFDKALAMKSKMEDNGCIPNAVTFDIIIRSLFEK 428

Query: 337 GKMDEASRLLELMILRGV 354
            + D+A +LL  MI +G+
Sbjct: 429 DENDKAEKLLHGMIAKGL 446



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 61/131 (46%)

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           E  VD     F ++      P ++ +  ++        +  A  L  +M  +G++P++VT
Sbjct: 43  ENVVDDTVSQFNRLLLVRHTPPIIEFGKILGYLVKMKHYPTAISLSRQMEVKGIEPNLVT 102

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N++++  C  G+M  +  +L  ++  G  P+T T +TLM G CL G V  +      + 
Sbjct: 103 LNILINCFCHLGQMAFSFSVLGKILKLGYQPDTITLNTLMKGLCLKGEVKRSLHFHDKVV 162

Query: 386 SMGCKHTVFSY 396
           + G +    SY
Sbjct: 163 AQGFQMNQVSY 173


>gi|22128589|gb|AAM52340.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 591

 Score =  227 bits (578), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 115/310 (37%), Positives = 184/310 (59%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +F  M+  +P P  + SF+ L   +   KHY +V+SLF+ ++   +    +  +I
Sbjct: 54  DDAFSLFRQMVRTKPLPS-VASFSKLLKAMVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           ++N  C M R   GF VL    +     + V FT+LI+GL AE+++ +A  LF KL +  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVREN 172

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C+PN + Y T++NGLC+ GHT  A +L   M  G+       KPNT TYT +ID  CK+
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS------TKPNTRTYTIVIDAFCKD 226

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A  L  +MK K+I PD+ TY++LI   C  + W     L +EM+   + P+V TF
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D LCK GK+++A  ++  MI +GV+P+  T++ ++DG+ L G+V+ A+E+F SM +
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 387 MGCKHTVFSY 396
              +  + SY
Sbjct: 347 KSIEPDIISY 356



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 145/278 (52%), Gaps = 8/278 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           L+ G  A+ K  D V  LFK+L    +  P+   Y  ++N  CK G     F +L  + +
Sbjct: 148 LIRGLFAENKVKDAV-HLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQ 206

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+   +T +I   C +  +  A +L  ++K     P++ TYSTLI+ LC+      
Sbjct: 207 GSTKPNTRTYTIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWEN 266

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
              LF EM + N        PN  T+ ++IDGLCKEG V+ A+E+   M +K ++PDV+T
Sbjct: 267 VRTLFLEMIHLN------IYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVIT 320

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN +I G+      + A  +   M+++ ++PD++++N++++   +  K+DEA ++   + 
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREIS 380

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +G+ P+  T + L+ G    GR   A+  F  M S G
Sbjct: 381 QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAG 418



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/426 (22%), Positives = 178/426 (41%), Gaps = 55/426 (12%)

Query: 4   VSSTCSFHFTSISISALRCNFSSSFPH-----TRKPKSSISKNEPSDPTTTAKLKESLRL 58
           V+S C  H T +  S L  +F    P+     T   +   ++N+  D     K      +
Sbjct: 114 VNSCCLMHRTDLGFSVLAIHFKKGIPYNEVTFTTLIRGLFAENKVKDAVHLFKKLVRENI 173

Query: 59  TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
              +       +   CK             +AF +   M     + P   ++ ++     
Sbjct: 174 CEPNEVMYGTVMNGLCKKG--------HTQKAFDLLRLM-EQGSTKPNTRTYTIVIDAFC 224

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K    D   SL   +    + PD++TY+ LI+  CK+ +  +   +   ++     P+  
Sbjct: 225 KDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVC 284

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            F S+I GLC E ++ +A  +   +   G  P+VITY+ +I+G    G    A  +F+ M
Sbjct: 285 TFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSM 344

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            N +       +P+ ++Y  +I+G  ++  +D+A ++  ++  K + P +VT N L+HG 
Sbjct: 345 INKS------IEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGL 398

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVT--------------------------------- 325
                   A     EM+  G  PD+ T                                 
Sbjct: 399 FELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNI 458

Query: 326 --FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +  ++D LCKNGK+D+A    E + L G++P+  T++ ++ G+C  G ++ AK++   
Sbjct: 459 QIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRK 518

Query: 384 MESMGC 389
           ME  GC
Sbjct: 519 MEDNGC 524



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 138/291 (47%), Gaps = 29/291 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L K    +    + + +   G+ PD+ TYN++I+ +   G+V     +
Sbjct: 281 PNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD +++  LI G   + +I EA  +  ++   G KP+++T + L++GL  
Sbjct: 341 FDSMINKSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 225 TGHTIVALNLFEEMAN---------------GNGKFGVVCKP--------------NTVT 255
            G T  A N F+EM +               G  K G+V +               N   
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQI 460

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YT +IDGLCK G +DKA   F ++    ++PDV+TY ++I G+C     +EA  +L +M 
Sbjct: 461 YTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKME 520

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           D G   D  T+NVI+    ++ K+ E    LE +  +  +   +T   LMD
Sbjct: 521 DNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 70/263 (26%), Positives = 128/263 (48%), Gaps = 7/263 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  IFD M+N +   P + S+N+L    A+ K  D  + + + ++  GL P + T N+
Sbjct: 335 DRAREIFDSMIN-KSIEPDIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   ++GR          +L +   PD     +L+ G      + EA + F KL+   
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N+  Y+ +I+GLC+ G    A   FE++        +   P+ +TYT +I G C+EG
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLP------LIGLHPDVITYTAMISGYCQEG 507

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+AK++  +M+D     D  TYN ++ GF  +N  +E    L E+  +    +  T  
Sbjct: 508 LLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVE 567

Query: 328 VIMDELCKNGKMDEASRLLELMI 350
           ++MD + ++  +      ++L I
Sbjct: 568 LLMDIIAEDPSITRKMHWIKLHI 590


>gi|356561683|ref|XP_003549109.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  227 bits (578), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 174/308 (56%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ ML MRP PPP   FN +   L K K Y TV+SLFK+    G+ PDL T +IL
Sbjct: 44  DAVASFNRMLLMRP-PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSIL 102

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCFC +  ++  F V   IL+  + P+A+   +LIKGLC    I  A     K+ A G 
Sbjct: 103 INCFCHLTHITFAFSVFANILKRGYHPNAITLNTLIKGLCFCGEIKRALHFHDKVVAQGF 162

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + + ++Y TLINGLC+ G T     L  ++       G   KP+ V YTTII  LCK   
Sbjct: 163 QLDQVSYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDLVMYTTIIHCLCKNKL 216

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +L+ +M  K I+P+V TY +LIHGFC   +  EA  LL EM  + + PDV TFN+
Sbjct: 217 LGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNI 276

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D L K GK+DEA  L E M  + + PN  T+++L+DG C    +  A  L   M+  G
Sbjct: 277 LIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQG 336

Query: 389 CKHTVFSY 396
            +  V+SY
Sbjct: 337 IQPNVYSY 344



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 130/250 (52%), Gaps = 6/250 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +  +  CL K K       L+  +   G+ P+++TY  LI+ FC MG +   F +
Sbjct: 199 PDLVMYTTIIHCLCKNKLLGDACDLYSEMIVKGISPNVFTYTTLIHGFCIMGNLKEAFSL 258

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD   F  LI  L  E +I EA +LF ++K     PN++TY++LI+GLC+
Sbjct: 259 LNEMKLKNINPDVYTFNILIDALAKEGKIDEAMSLFEEMKHKNMFPNIVTYTSLIDGLCK 318

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             H   A+ L ++M           +PN  +YT ++D LCK G ++ AK+ F  +  K  
Sbjct: 319 NHHLERAIALCKKMKEQG------IQPNVYSYTILLDALCKGGRLENAKQFFQHLLVKGY 372

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + +V TYN +I+G C A  + +   L  +M  +G  P+ +TF  I+  L +  + D+A +
Sbjct: 373 HLNVRTYNVMINGLCKAGLFGDVMDLKSKMEGKGCMPNAITFKTIICALLEKDENDKAEK 432

Query: 345 LLELMILRGV 354
            L  MI RG+
Sbjct: 433 FLREMIARGL 442



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/281 (29%), Positives = 135/281 (48%), Gaps = 6/281 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L K      V  L ++L    + PDL  Y  +I+C CK   +     +   
Sbjct: 167 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDLVMYTTIIHCLCKNKLLGDACDLYSE 226

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++    +P+   +T+LI G C    + EA +L  ++K     P+V T++ LI+ L + G 
Sbjct: 227 MIVKGISPNVFTYTTLIHGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALAKEGK 286

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A++LFEEM + N        PN VTYT++IDGLCK   +++A  L  +MK++ I P+
Sbjct: 287 IDEAMSLFEEMKHKN------MFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPN 340

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V +Y  L+   C       A      ++ +G   +V T+NV+++ LCK G   +   L  
Sbjct: 341 VYSYTILLDALCKGGRLENAKQFFQHLLVKGYHLNVRTYNVMINGLCKAGLFGDVMDLKS 400

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M  +G  PN  TF T++         + A++    M + G
Sbjct: 401 KMEGKGCMPNAITFKTIICALLEKDENDKAEKFLREMIARG 441


>gi|357499033|ref|XP_003619805.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494820|gb|AES76023.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 548

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 6/303 (1%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+++L  +   PP   FN +   L K KH+ T LSL +++   G+  D +T+NILINCF 
Sbjct: 48  FNHLLLHKNPTPPTFQFNKILSSLVKAKHHSTALSLHQQMELNGIESDFFTFNILINCFS 107

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           ++G  S  F +  +IL+  + P A+ F +LIKGLC +  I +A     K+ A G   + +
Sbjct: 108 QLGLNSLSFSIFAKILKKGYHPTAITFNTLIKGLCLKGHIHQALHFHDKVVAQGFHLDQV 167

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TLINGLC+ G    AL L + +       G + +PN V Y  IID +CK   V+ A 
Sbjct: 168 SYGTLINGLCKVGRITAALQLLKRVD------GKLVQPNAVMYNMIIDNMCKAKLVNDAF 221

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L+ QM  K I PDV TYN+LI GF   +  N A  L  +M  + + P+V TFN+++D  
Sbjct: 222 DLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNILVDGF 281

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK GK+++A  +L +M+   + P+  T+++LMDG+C   +VN AK++F SM S G    V
Sbjct: 282 CKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGGVIANV 341

Query: 394 FSY 396
             Y
Sbjct: 342 QIY 344



 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 98/305 (32%), Positives = 175/305 (57%), Gaps = 13/305 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M+  R  P   T +N L    +     +  + LF ++    + P++YT+NI
Sbjct: 218 NDAFDLYSQMVAKRICPDVFT-YNALISGFSAVSKLNYAIDLFNKMKKENINPNVYTFNI 276

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G+V+   VVL  +++    PD V + SL+ G C+ +++ +A  +F  + + G
Sbjct: 277 LVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCSINKVNKAKDIFDSMASGG 336

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLC 264
              NV  Y+T++NG C+      A+NLFEEM          C+   PN VTY+++IDGLC
Sbjct: 337 VIANVQIYTTMVNGFCKIKMVDEAINLFEEMR---------CRKIIPNVVTYSSLIDGLC 387

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G +  A +L  +M D+   P++VTY+S++   C  +  ++A  LL  + DQG++PD+ 
Sbjct: 388 KLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMY 447

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+ +++  LC++G++++A  + E ++++G N +   ++ ++ GFC  G  + A  L   M
Sbjct: 448 TYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKM 507

Query: 385 ESMGC 389
           E  GC
Sbjct: 508 EDNGC 512



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 163/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N++   + K K  +    L+ ++ +  + PD++TYN LI+ F  + ++++   +
Sbjct: 199 PNAVMYNMIIDNMCKAKLVNDAFDLYSQMVAKRICPDVFTYNALISGFSAVSKLNYAIDL 258

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ +    P+   F  L+ G C E ++ +A  +   +     KP+V+TY++L++G C 
Sbjct: 259 FNKMKKENINPNVYTFNILVDGFCKEGKVNDAKVVLAIMMKDDIKPDVVTYNSLMDGYCS 318

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA+G    GV+   N   YTT+++G CK   VD+A  LF +M+ + I
Sbjct: 319 INKVNKAKDIFDSMASG----GVIA--NVQIYTTMVNGFCKIKMVDEAINLFEEMRCRKI 372

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTY+SLI G C       A  L+ EM D+G  P++VT++ I+D LCKN  +D+A  
Sbjct: 373 IPNVVTYSSLIDGLCKLGRIFYALKLVDEMHDRGQPPNIVTYSSILDALCKNHHVDKAIA 432

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  +  +G+ P+  T++ L+ G C +GR+  A+ +F  +   G    V++Y
Sbjct: 433 LLTNLKDQGIRPDMYTYTILIKGLCQSGRLEDAQNVFEDLLVKGYNLDVYAY 484



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/138 (32%), Positives = 67/138 (48%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP + +++ +   L K  H D  ++L   L   G+ PD+YTY ILI   C+ GR+  
Sbjct: 405 RGQPPNIVTYSSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTILIKGLCQSGRLED 464

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +L   +  D  A+T +I+G C +    +A AL +K++  GC PN  TY  +I 
Sbjct: 465 AQNVFEDLLVKGYNLDVYAYTVMIQGFCDKGFFDKALALLSKMEDNGCIPNAKTYELVIL 524

Query: 221 GLCRTGHTIVALNLFEEM 238
            L        A  L  EM
Sbjct: 525 SLFEKDENDTAEKLLREM 542


>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
          Length = 667

 Score =  226 bits (577), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 133/397 (33%), Positives = 216/397 (54%), Gaps = 44/397 (11%)

Query: 36  SSISKNEPSDPTTTAKL--KESLRLTVKDRASLEQ--FLKERCK-SSGQGDITAITPNEA 90
           + + + E S     A+L    S+R T+  ++S +   F  ER K  SG  +I  +  ++A
Sbjct: 3   ARVCRFESSSSVPAARLFCTRSIRHTLAKKSSGKAGGFGGERLKLQSGFHEIKGL--DDA 60

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
             +F YM+  RP P  +  F  L G + + +  D V+SL +++    +  ++Y++ ILI 
Sbjct: 61  IDLFGYMVRSRPLPC-VIDFCKLLGVVVRMERPDVVISLHRKMEMRRIPCNIYSFTILIK 119

Query: 151 CFCKMGRVSHGFVVLGRILRSCF-------------------------------TPDAVA 179
           CFC   ++       G+I +  F                                P+ +A
Sbjct: 120 CFCSCSKLPFALSTFGKITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQICKPNVIA 179

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           FT+L+ GLC E R++EA AL  ++   G +PN ITY T+++G+C+ G T+ ALNL  +M 
Sbjct: 180 FTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKME 239

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
             +       KPN V Y+ IIDGL K+G    A+ LF +M++K I+P++ TYN +I+GFC
Sbjct: 240 EVSR-----IKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFC 294

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            +  W+EA  LL EM ++ + PDVVTF+V+++ L K GK  EA  L   M+ RG+ PNT 
Sbjct: 295 SSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTI 354

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+++++DGF    R++ A+ +F  M + GC   V ++
Sbjct: 355 TYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITF 391



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/307 (32%), Positives = 158/307 (51%), Gaps = 17/307 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F++L   L K   +     L+  +   G+ P+  TYN +I+ F K  R+  
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGIIPNTITYNSMIDGFSKQNRLDA 371

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +     +PD + F+ LI G C   R+ +   L  ++   G   N ITY+TLI+
Sbjct: 372 AERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIH 431

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+ G+   AL+L +EM +       VC PN VT  T++DGLC  G +  A E+F  M+
Sbjct: 432 GFCQLGNLNAALDLLQEMISSG-----VC-PNVVTCNTLLDGLCNNGKLKDALEMFKVMQ 485

Query: 281 DK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
                        ++ PDV TYN LI G      ++EA  L  EM  +G+ PD +T+N +
Sbjct: 486 KSKMDLDASHPFNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHRGLVPDTITYNSV 545

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK  ++DEA+++ + M  +G +P+  TF+TL++G+C  GRV    E+F  M   G 
Sbjct: 546 IDGLCKQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGI 605

Query: 390 KHTVFSY 396
                +Y
Sbjct: 606 VANAITY 612



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 159/306 (51%), Gaps = 8/306 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ ML  R   P   ++N +    +K    D    +F  + + G  PD+ T++IL
Sbjct: 336 EAEELYNEMLP-RGIIPNTITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSIL 394

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   RV  G  +L  + R     + + +T+LI G C    +  A  L  ++ + G 
Sbjct: 395 IDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGV 454

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDG 262
            PNV+T +TL++GLC  G    AL +F+ M       + +  F  V +P+  TY  +I G
Sbjct: 455 CPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDV-EPDVQTYNILICG 513

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  EG   +A+EL+ +M  + + PD +TYNS+I G C  +  +EA  +   M  +G  PD
Sbjct: 514 LINEGKFSEAEELYEEMPHRGLVPDTITYNSVIDGLCKQSRLDEATQMFDSMGSKGFSPD 573

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVTF  +++  CK G++ +   +   M  RG+  N  T+ TL+ GFC  G +N A ++F 
Sbjct: 574 VVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRTLIHGFCQVGNINGALDIFQ 633

Query: 383 SMESMG 388
            M S G
Sbjct: 634 EMISSG 639



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 156/313 (49%), Gaps = 34/313 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L +       ++L  R+   GL P+  TY  +++  CKMG       +
Sbjct: 175 PNVIAFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMCKMGDTVSALNL 234

Query: 165 LGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L ++   S   P+ V ++++I GL  + R  +A  LF++++  G  PN+ TY+ +ING C
Sbjct: 235 LRKMEEVSRIKPNVVIYSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFC 294

Query: 224 RTGHTIVALNLFEEMAN------------------GNGKF-------------GVVCKPN 252
            +G    A  L  EM                      GKF             G++  PN
Sbjct: 295 SSGRWSEAQRLLREMFERKMSPDVVTFSVLINALVKEGKFFEAEELYNEMLPRGII--PN 352

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
           T+TY ++IDG  K+  +D A+ +F  M  K  +PDV+T++ LI G+C A   ++   LL 
Sbjct: 353 TITYNSMIDGFSKQNRLDAAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLH 412

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM  +G+  + +T+  ++   C+ G ++ A  LL+ MI  GV PN  T +TL+DG C  G
Sbjct: 413 EMSRRGLVANTITYTTLIHGFCQLGNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNG 472

Query: 373 RVNHAKELFVSME 385
           ++  A E+F  M+
Sbjct: 473 KLKDALEMFKVMQ 485



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 146/284 (51%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P + +F++L       K  D  + L   ++  GL  +  TY  LI+ FC++
Sbjct: 377 YLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLIHGFCQL 436

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   P+ V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 437 GNLNAALDLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHP 496

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
               +P+V TY+ LI GL   G    A  L+EEM +     G+V  P+T+TY ++IDGLC
Sbjct: 497 FNDVEPDVQTYNILICGLINEGKFSEAEELYEEMPHR----GLV--PDTITYNSVIDGLC 550

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K  +PDVVT+ +LI+G+C      +   +  EM  +G+  + +
Sbjct: 551 KQSRLDEATQMFDSMGSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAI 610

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++   C+ G ++ A  + + MI  GV P+T T   ++ G 
Sbjct: 611 TYRTLIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGL 654



 Score = 44.7 bits (104), Expect = 0.082,   Method: Compositional matrix adjust.
 Identities = 25/110 (22%), Positives = 49/110 (44%), Gaps = 1/110 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K       L +F  +   G+  +  TY  
Sbjct: 556 DEATQMFDSM-GSKGFSPDVVTFTTLINGYCKVGRVGDGLEVFCEMGRRGIVANAITYRT 614

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           LI+ FC++G ++    +   ++ S   PD +   +++ GL ++  +  A 
Sbjct: 615 LIHGFCQVGNINGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELKRAV 664


>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  226 bits (575), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/302 (38%), Positives = 172/302 (56%), Gaps = 8/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYN 146
           +EA  +F  M  M+P  P +  F LL G + + KHY T +SL K + +S G+  D  T N
Sbjct: 58  DEALDLFQGMARMKP-LPSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLN 116

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I+INC C++  V+ GF VLG + +    P  +  T+LI GLC +  + +A  L   ++  
Sbjct: 117 IVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKM 176

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
               +V TY  LINGLC+TG T+ A+    +M   N       KPN V Y+TI+DGLCK+
Sbjct: 177 WYPLDVYTYGVLINGLCKTGDTLAAVGWLRKMEERN------WKPNVVVYSTIMDGLCKD 230

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V +A  L  +M  K + P++VTY  LI G C    W EA  LL EMM  G++PD+   
Sbjct: 231 GLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQML 290

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D  CK GK+ +A  ++  MIL G  P+  T+++L+  +CL  ++N A  +F  M S
Sbjct: 291 NILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVS 350

Query: 387 MG 388
            G
Sbjct: 351 RG 352



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N +   P L ++  L   L     +    SL   +   G+ PDL   NIL++ FCK G+
Sbjct: 243 MNGKGVRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGK 302

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     V+G ++ +   PD   + SLI   C ++++ EA  +F  + + G  P+++ +++
Sbjct: 303 VMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTS 362

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+  +   A++L EEM+    K G V  P+  T+TT+I G C+ G    AKELFL
Sbjct: 363 LIHGWCKDKNINKAMHLLEEMS----KMGFV--PDVATWTTLIGGFCQAGRPLAAKELFL 416

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M      P++ T   ++ G C  N  +EA  L   M    +  ++V +++++D +C  G
Sbjct: 417 NMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAG 476

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           K++ A  L   +  +G+  N   ++ ++ G C  G ++ A++L ++ME  GC
Sbjct: 477 KLNAAWELFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGC 528



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 144/300 (48%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+ M    P L   N+L     K        S+   +  TG  PD++TYN L
Sbjct: 270 EAGSLLDEMMKM-GMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   +++    V   ++     PD V FTSLI G C +  I +A  L  ++   G 
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGF 388

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V T++TLI G C+ G  + A  LF  M     K+G V  PN  T   I+DGLCKE  
Sbjct: 389 VPDVATWTTLIGGFCQAGRPLAAKELFLNMH----KYGQV--PNLQTCAVILDGLCKENL 442

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A  L   M+  N++ ++V Y+ L+ G C A   N A  L   +  +G+Q +V  + +
Sbjct: 443 LSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIYTI 502

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LCK G +D+A  LL  M   G  PN  T++  + G      +  + +    M   G
Sbjct: 503 MIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKG 562



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 142/296 (47%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P +  ++ +   L K       L+L   +N  G+ P+L TY  LI   C  GR   
Sbjct: 211 RNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKGVRPNLVTYACLIQGLCNFGRWKE 270

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  +++    PD      L+   C E ++M+A ++   +   G  P+V TY++LI+
Sbjct: 271 AGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIH 330

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             C       A+ +F  M +  G+      P+ V +T++I G CK+  ++KA  L  +M 
Sbjct: 331 IYCLQNKMNEAMRVFHLMVS-RGRL-----PDIVVFTSLIHGWCKDKNINKAMHLLEEMS 384

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                PDV T+ +LI GFC A     A  L + M   G  P++ T  VI+D LCK   + 
Sbjct: 385 KMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLS 444

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  L + M    ++ N   +S L+DG C  G++N A ELF S+   G +  V+ Y
Sbjct: 445 EAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYIY 500



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 116/249 (46%), Gaps = 7/249 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M++ R   P +  F  L     K K+ +  + L + ++  G  PD+ T+  
Sbjct: 339 NEAMRVFHLMVS-RGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTT 397

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC+ GR      +   + +    P+      ++ GLC E+ + EA +L   ++   
Sbjct: 398 LIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSN 457

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N++ YS L++G+C  G    A  LF  +  G G      + N   YT +I GLCK+G
Sbjct: 458 LDLNIVIYSILLDGMCSAGKLNAAWELFSSLP-GKG-----LQINVYIYTIMIKGLCKQG 511

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA++L + M++    P+  TYN  + G     +   +   L  M D+G   D  T  
Sbjct: 512 SLDKAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTE 571

Query: 328 VIMDELCKN 336
            I++ L  N
Sbjct: 572 FIINYLSTN 580



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 7/217 (3%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           P    FT L+  +        A +L   +  + G + + IT + +IN LCR        +
Sbjct: 74  PSVKDFTLLLGAIVRLKHYTTAISLVKHMFSSLGIEADTITLNIVINCLCRLKLVAFGFS 133

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +   M      F +  +P  +T TT+I+GLC +G V +A  L   M+      DV TY  
Sbjct: 134 VLGTM------FKLGLEPTVMTLTTLINGLCVQGNVAQAVGLADHMEKMWYPLDVYTYGV 187

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C   D   A   L +M ++  +P+VV ++ IMD LCK+G + EA  L   M  +G
Sbjct: 188 LINGLCKTGDTLAAVGWLRKMEERNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMNGKG 247

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           V PN  T++ L+ G C  GR   A  L   M  MG +
Sbjct: 248 VRPNLVTYACLIQGLCNFGRWKEAGSLLDEMMKMGMR 284


>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 630

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 123/359 (34%), Positives = 198/359 (55%), Gaps = 43/359 (11%)

Query: 73  RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
           R K S  G ++ +  ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL ++
Sbjct: 49  REKLSRNG-LSELKLDDAVALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQ 106

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           + + G+  + YTY+ILINCFC+  ++     VLG++++  + P+ V  +SL+ G C   R
Sbjct: 107 MQNLGMPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166

Query: 193 I-----------------------------------MEAAALFTKLKAFGCKPNVITYST 217
           I                                    EA AL  ++ A GC+P+++TY  
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGV 226

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++NGLC+ G T +A  L  +M  G        +P  + YTTIIDGLCK   +D A  LF 
Sbjct: 227 VVNGLCKRGDTDLAFILLNKMEQGK------LEPGVLIYTTIIDGLCKNKHMDDALNLFK 280

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++ + PDV TF+ ++D   K G
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+ EA +L + M+ R ++P+  T+S+L++GFC+  R++ AK++F  M S  C   V SY
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSY 399



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 167/307 (54%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + + M   +  P  L    ++ G L K KH D  L+LFK + + G+ P++ TY+ LI
Sbjct: 240 AFILLNKMEQGKLEPGVLIYTTIIDG-LCKNKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +C C  GR S    +L  ++     PD   F++LI     E +++EA  L+ ++      
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TYS+LING C       A  +FE M + +      C P+ V+Y+T+I G CK   V
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH------CFPDVVSYSTLIKGFCKAKRV 412

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+  ELF +M  + +  + VTY +LI G   A D + A  +  EM+  GV P+++T+N +
Sbjct: 413 DEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCKNGK+++A  + E +    + P   T++ +++G C  G+V    +LF ++   G 
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532

Query: 390 KHTVFSY 396
           K  V +Y
Sbjct: 533 KPDVVAY 539



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 143/289 (49%), Gaps = 8/289 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F+ L     K         L+  +    + P + TY+ LIN FC   R+  
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 161 GFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
              +   ++ + CF PD V++++LIKG C   R+ E   LF ++   G   N +TY+TLI
Sbjct: 380 AKQMFEFMVSKHCF-PDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLI 438

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            GL + G   +A  +F+EM +          PN +TY T++DGLCK G ++KA  +F  +
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDG------VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           +   + P + TYN +I G C A    +   L   +  +GV+PDVV +N ++   C+ G  
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 552

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +EA  L + M   G  PN+  ++TL+      G    + EL   M S G
Sbjct: 553 EEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 601



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 144/289 (49%), Gaps = 8/289 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FPD+ +Y+ L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTL 402

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   + +     + V +T+LI+GL        A  +F ++ + G 
Sbjct: 403 IKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY+TL++GLC+ G    A+ +FE +           +P   TY  +I+G+CK G 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 516

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + PDVV YN++I GFC      EA+ L  EM + G  P+   +N 
Sbjct: 517 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 576

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++    ++G  + ++ L++ M   G   + ST   L+      GR++ +
Sbjct: 577 LIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 624



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++N L   L K    +  + +F+ L  + + P +YTYNI+I   CK G+V  G+ 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      PD VA+ ++I G C +    EA ALF ++K  G  PN   Y+TLI    
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT--IIDGLCKEGFVD 270
           R G    +  L +EM +     G     +T+   T  + DG   + F+D
Sbjct: 583 RDGDREASAELIKEMRS----CGFAGDASTIGLVTNMLHDGRLDKSFLD 627


>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
          Length = 1244

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 198/359 (55%), Gaps = 43/359 (11%)

Query: 73   RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
            R K S  G ++ +  ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL ++
Sbjct: 663  REKLSRNG-LSELKLDDAVALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQ 720

Query: 133  LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
            + + G+  + YTY+ILINCFC+  ++     VLG++++  + P+ V  +SL+ G C   R
Sbjct: 721  MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 780

Query: 193  IMEAA-----------------------------------ALFTKLKAFGCKPNVITYST 217
            I EA                                    AL  ++ A GC+P+++TY  
Sbjct: 781  ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 840

Query: 218  LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            ++NGLC+ G T +A NL  +M  G        +P  + Y TIIDGLCK   +D A  LF 
Sbjct: 841  VVNGLCKRGDTDLAFNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLFK 894

Query: 278  QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++ + PDV TF+ ++D   K G
Sbjct: 895  EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 954

Query: 338  KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            K+ EA +L + M+ R ++P+  T+S+L++GFC+  R++ AK++F  M S  C   V +Y
Sbjct: 955  KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 1013



 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 191/356 (53%), Gaps = 33/356 (9%)

Query: 70  LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
           L+ER   +   DI     N+A  +F  M+  RP P  +  FN L   + K K YD V+SL
Sbjct: 155 LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISL 210

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            K++   G+  DLYT+NI+INCFC   +VS    +LG++L+  + PD V   SL+ G C 
Sbjct: 211 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 270

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV- 248
            +R+ +A +L  K+   G KP+++ Y+ +I+ LC+T     A + F+E+     +  VV 
Sbjct: 271 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 330

Query: 249 ----------------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                                         PN +TY+ ++D   K G V +AKELF +M 
Sbjct: 331 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 390

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +I+PD+VTY+SLI+G C  +  +EAN +   M+ +G   DVV++N +++  CK  +++
Sbjct: 391 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 450

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +L   M  RG+  NT T++TL+ GF   G V+ A+E F  M+  G    +++Y
Sbjct: 451 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 506



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 90   AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            AF + + M   +  P  L  +N +   L K KH D  L+LFK + + G+ P++ TY+ LI
Sbjct: 854  AFNLLNKMEQGKLEPGVLI-YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 912

Query: 150  NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
            +C C  GR S    +L  ++     PD   F++LI     E +++EA  L+ ++      
Sbjct: 913  SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 972

Query: 210  PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            P+++TYS+LING C       A  +FE M + +      C P+ VTY T+I G CK   V
Sbjct: 973  PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRV 1026

Query: 270  DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            ++  E+F +M  + +  + VTYN LI G   A D + A  +  EM+  GV P+++T+N +
Sbjct: 1027 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 1086

Query: 330  MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            +D LCKNGK+++A  + E +    + P   T++ +++G C  G+V    +LF ++   G 
Sbjct: 1087 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 1146

Query: 390  KHTVFSY 396
            K  V +Y
Sbjct: 1147 KPDVVAY 1153



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 167/336 (49%), Gaps = 42/336 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+ +    P + ++N +   L KTK  +     FK +   G+ P++ TY  
Sbjct: 275 SDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 333

Query: 148 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 172
           L+N  C   R S                           FV  G++L          R  
Sbjct: 334 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 393

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD V ++SLI GLC   RI EA  +F  + + GC  +V++Y+TLING C+       +
Sbjct: 394 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 453

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF EM+    + G+V   NTVTY T+I G  + G VDKA+E F QM    I+PD+ TYN
Sbjct: 454 KLFREMS----QRGLV--SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 507

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            L+ G C   +  +A  +  +M  + +  D+VT+  ++  +CK GK++EA  L   + L+
Sbjct: 508 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 567

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G+ P+  T++T+M G C  G ++  + L+  M+  G
Sbjct: 568 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 603



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 101  RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
            R   P + +F+ L     K         L+  +    + P + TY+ LIN FC   R+  
Sbjct: 934  RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 993

Query: 161  GFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +   ++ + CF PD V + +LIKG C   R+ E   +F ++   G   N +TY+ LI
Sbjct: 994  AKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 1052

Query: 220  NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
             GL + G   +A  +F+EM +     GV   PN +TY T++DGLCK G ++KA  +F  +
Sbjct: 1053 QGLFQAGDCDMAQEIFKEMVSD----GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 1106

Query: 280  KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
            +   + P + TYN +I G C A    +   L   +  +GV+PDVV +N ++   C+ G  
Sbjct: 1107 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 1166

Query: 340  DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +EA  L + M   G  PN+  ++TL+      G    + EL   M S G
Sbjct: 1167 EEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 1215



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            EA  ++D M+  R   P + +++ L          D    +F+ + S   FPD+ TYN L
Sbjct: 958  EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 1016

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            I  FCK  RV  G  V   + +     + V +  LI+GL        A  +F ++ + G 
Sbjct: 1017 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 1076

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             PN++TY+TL++GLC+ G    A+ +FE +           +P   TY  +I+G+CK G 
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 1130

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            V+   +LF  +  K + PDVV YN++I GFC      EA+ L  EM + G  P+   +N 
Sbjct: 1131 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 1190

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++    ++G  + ++ L++ M   G   + ST   L+      GR++ +
Sbjct: 1191 LIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 1238



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 74/323 (22%), Positives = 144/323 (44%), Gaps = 46/323 (14%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L     +    D     F +++  G+ PD++TYNIL+   C  G +    V+   
Sbjct: 469 VTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYNILLGGLCDNGELEKALVIFED 528

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG- 226
           + +     D V +T++I+G+C   ++ EA +LF  L   G KP+++TY+T+++GLC  G 
Sbjct: 529 MQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLKGLKPDIVTYTTMMSGLCTKGL 588

Query: 227 -HTIVAL--NLFEE--------MANGNGKFG-------VVCKPNTVTYTTIIDGLCKEGF 268
            H + AL   + +E        +++G+           + C         I  G+CK+  
Sbjct: 589 LHEVEALYTKMKQEGLMKNDCTLSDGDITLSAELIKKMLSCGYAPSLLKDIKSGVCKKAL 648

Query: 269 ---------------------------VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                                      +D A  LF +M      P ++ ++ L+      
Sbjct: 649 SLLRAFSGKTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKM 708

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           N ++    L  +M + G+  +  T++++++  C+  ++  A  +L  M+  G  PN  T 
Sbjct: 709 NKFDVVISLGEQMQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTL 768

Query: 362 STLMDGFCLTGRVNHAKELFVSM 384
           S+L++G+C + R++ A  L   M
Sbjct: 769 SSLLNGYCHSKRISEAVALVDQM 791



 Score = 87.8 bits (216), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 104  PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            PP + ++N L   L K    +  + +F+ L  + + P +YTYNI+I   CK G+V  G+ 
Sbjct: 1077 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 1136

Query: 164  VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +   +      PD VA+ ++I G C +    EA ALF ++K  G  PN   Y+TLI    
Sbjct: 1137 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 1196

Query: 224  RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT--IIDGLCKEGFVD 270
            R G    +  L +EM +     G     +T+   T  + DG   + F+D
Sbjct: 1197 RDGDREASAELIKEMRS----CGFAGDASTIGLVTNMLHDGRLDKSFLD 1241


>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
 gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62670, mitochondrial; Flags: Precursor
 gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
          Length = 630

 Score =  225 bits (574), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/359 (33%), Positives = 198/359 (55%), Gaps = 43/359 (11%)

Query: 73  RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
           R K S  G ++ +  ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL ++
Sbjct: 49  REKLSRNG-LSELKLDDAVALFGEMVKSRPFPS-IIEFSKLLSAIAKMNKFDVVISLGEQ 106

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           + + G+  + YTY+ILINCFC+  ++     VLG++++  + P+ V  +SL+ G C   R
Sbjct: 107 MQNLGIPHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKR 166

Query: 193 IMEAA-----------------------------------ALFTKLKAFGCKPNVITYST 217
           I EA                                    AL  ++ A GC+P+++TY  
Sbjct: 167 ISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGV 226

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++NGLC+ G T +A NL  +M  G        +P  + Y TIIDGLCK   +D A  LF 
Sbjct: 227 VVNGLCKRGDTDLAFNLLNKMEQGK------LEPGVLIYNTIIDGLCKYKHMDDALNLFK 280

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++ + PDV TF+ ++D   K G
Sbjct: 281 EMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEG 340

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+ EA +L + M+ R ++P+  T+S+L++GFC+  R++ AK++F  M S  C   V +Y
Sbjct: 341 KLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTY 399



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + + M   +  P  L  +N +   L K KH D  L+LFK + + G+ P++ TY+ LI
Sbjct: 240 AFNLLNKMEQGKLEPGVLI-YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 298

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +C C  GR S    +L  ++     PD   F++LI     E +++EA  L+ ++      
Sbjct: 299 SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 358

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TYS+LING C       A  +FE M + +      C P+ VTY T+I G CK   V
Sbjct: 359 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRV 412

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++  E+F +M  + +  + VTYN LI G   A D + A  +  EM+  GV P+++T+N +
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCKNGK+++A  + E +    + P   T++ +++G C  G+V    +LF ++   G 
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532

Query: 390 KHTVFSY 396
           K  V +Y
Sbjct: 533 KPDVVAY 539



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 140/289 (48%), Gaps = 8/289 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F+ L     K         L+  +    + P + TY+ LIN FC   R+  
Sbjct: 320 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 379

Query: 161 GFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
              +   ++ + CF PD V + +LIKG C   R+ E   +F ++   G   N +TY+ LI
Sbjct: 380 AKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 438

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            GL + G   +A  +F+EM +          PN +TY T++DGLCK G ++KA  +F  +
Sbjct: 439 QGLFQAGDCDMAQEIFKEMVSDG------VPPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 492

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           +   + P + TYN +I G C A    +   L   +  +GV+PDVV +N ++   C+ G  
Sbjct: 493 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 552

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +EA  L + M   G  PN+  ++TL+      G    + EL   M S G
Sbjct: 553 EEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 601



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FPD+ TYN L
Sbjct: 344 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 402

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  V   + +     + V +  LI+GL        A  +F ++ + G 
Sbjct: 403 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 462

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY+TL++GLC+ G    A+ +FE +           +P   TY  +I+G+CK G 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 516

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + PDVV YN++I GFC      EA+ L  EM + G  P+   +N 
Sbjct: 517 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 576

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++    ++G  + ++ L++ M   G   + ST   L+      GR++ +
Sbjct: 577 LIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 624



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 6/169 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++N L   L K    +  + +F+ L  + + P +YTYNI+I   CK G+V  G+ 
Sbjct: 463 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWD 522

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      PD VA+ ++I G C +    EA ALF ++K  G  PN   Y+TLI    
Sbjct: 523 LFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARL 582

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT--IIDGLCKEGFVD 270
           R G    +  L +EM +     G     +T+   T  + DG   + F+D
Sbjct: 583 RDGDREASAELIKEMRS----CGFAGDASTIGLVTNMLHDGRLDKSFLD 627


>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 589

 Score =  225 bits (574), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/311 (38%), Positives = 169/311 (54%), Gaps = 6/311 (1%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +   A   F  M+ M P P     F  LFG + K KHY T +SL K + S G+ PD+YT 
Sbjct: 51  SEEAALSFFHKMVVMNPLPRE-KDFTKLFGIIVKMKHYATTISLIKHIYSLGIKPDVYTL 109

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+INC C +     GF VLG + +    P  V F +LI GLCAE  +  AA     L+ 
Sbjct: 110 TIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEGNVARAARFADSLED 169

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G + N  TY  +INGLC+ G T  A+   E++   N    VV     + Y+TI+D LCK
Sbjct: 170 MGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCDLDVV-----IAYSTIMDSLCK 224

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G V +A  LF  M  K I PD+V YNSLIHG C    W EA  LL  MM +G+ P+V T
Sbjct: 225 DGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQT 284

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FNV++D  CK+G +  A  ++  M+  GV P+  T+++++ G CL  ++  A ++F  M 
Sbjct: 285 FNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMI 344

Query: 386 SMGCKHTVFSY 396
             G    + +Y
Sbjct: 345 HKGFLPNLVTY 355



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M + +   P L ++N L   L     +    +L   +   G+ P++ T+N+L
Sbjct: 230 EALNLFSGMTS-KGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVL 288

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FCK G +S    ++G ++     PD V + S+I G C  S++ +A  +F  +   G 
Sbjct: 289 VDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGF 348

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TYS+LI+G C+T +   AL L  EM N          P+ VT++T+I G CK G 
Sbjct: 349 LPNLVTYSSLIHGWCKTKNINKALFLLGEMVNSG------LNPDVVTWSTLIGGFCKAGK 402

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + AKELF  M + + +P++ T   ++ G       +EA  L  EM    ++ +VV +N+
Sbjct: 403 PEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMNLELNVVIYNI 462

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D +C  GK+++A  L   +  +G+  +   ++T++ G C  G ++ A+ L + ME  G
Sbjct: 463 VLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENG 522

Query: 389 CKHTVFSY 396
           C    F+Y
Sbjct: 523 CLPNEFTY 530



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 7/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L    +          L   G   + YTY  +IN  CK G  S   + 
Sbjct: 139 PTVVTFATLINGLCAEGNVARAARFADSLEDMGHQSNSYTYGAIINGLCKAGDTSGAILY 198

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L +I  R+C     +A+++++  LC +  + EA  LF+ + + G +P+++ Y++LI+GLC
Sbjct: 199 LEKIKGRNCDLDVVIAYSTIMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L   M     + G++  PN  T+  ++D  CK+G + +AK +   M    
Sbjct: 259 NFGRWKEATTLLGNMM----RKGIM--PNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVTYNS+I G C  +   +A  +   M+ +G  P++VT++ ++   CK   +++A 
Sbjct: 313 VEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKTKNINKAL 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            LL  M+  G+NP+  T+STL+ GFC  G+   AKELF +M 
Sbjct: 373 FLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMH 414



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 150/296 (50%), Gaps = 8/296 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  I  +M+++   P  +T  +++ G    ++  D V  +F+ +   G  P+L TY+ 
Sbjct: 299 SRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDAV-KVFELMIHKGFLPNLVTYSS 357

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CK   ++    +LG ++ S   PD V +++LI G C   +   A  LF  +    
Sbjct: 358 LIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGKPEAAKELFCTMHEHD 417

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ T + +++GL +      A++LF EM   N       + N V Y  ++DG+C  G
Sbjct: 418 QHPNLQTCAIILDGLFKCQFHSEAISLFREMEKMN------LELNVVIYNIVLDGMCSFG 471

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+ELF  +  K I  DVV Y ++I G C     ++A  LL++M + G  P+  T+N
Sbjct: 472 KLNDAQELFSCLPSKGIKIDVVAYTTMIKGLCKEGLLDDAENLLMKMEENGCLPNEFTYN 531

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V +  L +   +  +++ L LM  +G++ + +T   L+  F    + N A  +F+ 
Sbjct: 532 VFVRGLLQRYDISRSTKYLLLMKGKGLSADATTTELLISYFS-ANKENSALHVFLQ 586


>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 123/326 (37%), Positives = 182/326 (55%), Gaps = 16/326 (4%)

Query: 68  QFL---KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           QFL   +  CKS    +I     +EA  +F  M +M+P  P +  F LL G + + KHY 
Sbjct: 40  QFLISMRNLCKSGKVKNI-----DEALDLFQGMASMKP-LPSVKDFTLLLGVIVRLKHYT 93

Query: 125 TVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           T +SL K + +S G+  D  T NI+INC C++  V+ GF VLG + +    P  +  T+L
Sbjct: 94  TAISLVKHIFSSLGIEADTITLNIVINCLCRLKLVAFGFSVLGTMFKLGLEPTVMTLTAL 153

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I GLC +  + +A  L   ++      +V TY  LINGLC+TG T+ A+    +M   N 
Sbjct: 154 INGLCVQGNVAQAVGLVDHMEKMRYPLDVYTYGVLINGLCKTGDTLAAVEWLRKMEERN- 212

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                 KPN V Y+TI+DGLCK+G V +A  L  +M  K + P++VTY  LI G C    
Sbjct: 213 -----WKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGR 267

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           W E   LL EM+  G++ D+ T N+++D  CK GK+ +A  ++  MIL G  P+  T+++
Sbjct: 268 WKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNS 327

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGC 389
           L+  +CL  ++N A  +F  M S GC
Sbjct: 328 LIHIYCLQNKMNEAMRVFHLMVSRGC 353



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++  L   L     +    SL   +   G+  DL T NIL++ FCK G+V     V
Sbjct: 250 PNLVTYACLIQGLCNFGRWKETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSV 309

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +G ++ +   PD   + SLI   C ++++ EA  +F  + + GC P+++ +++LI+G C+
Sbjct: 310 IGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCK 369

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +    ++L EEMA    K G V  P+ VT+TT+I G C+ G    AKELFL M     
Sbjct: 370 DKNINKVMHLLEEMA----KMGFV--PDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQ 423

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ T   ++ G C  N  +EA  L   M    +  ++V +++++D +C  GK++ A  
Sbjct: 424 VPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWE 483

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L   +  +G+  N  T++ ++ G C  G ++ A++L ++ME  GC
Sbjct: 484 LFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGC 528



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 141/296 (47%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P +  ++ +   L K       L+L   ++  G+ P+L TY  LI   C  GR   
Sbjct: 211 RNWKPNVVVYSTIMDGLCKDGLVSEALNLCSEMSGKGVRPNLVTYACLIQGLCNFGRWKE 270

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  +++     D      L+   C E ++M+A ++   +   G  P+V TY++LI+
Sbjct: 271 TGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIH 330

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             C       A+ +F  M +        C P+ V +T++I G CK+  ++K   L  +M 
Sbjct: 331 IYCLQNKMNEAMRVFHLMVSRG------CLPDIVVFTSLIHGWCKDKNINKVMHLLEEMA 384

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                PDVVT+ +LI GFC A     A  L + M   G  P++ T  VI+D LCK   + 
Sbjct: 385 KMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLS 444

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  L E M    ++ N   +S L+DG C  G++N A ELF S+   G +  V++Y
Sbjct: 445 EAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTY 500



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 143/300 (47%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E   + D M+ M      L + N+L     K        S+   +  TG  PD++TYN L
Sbjct: 270 ETGSLLDEMIKM-GMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C   +++    V   ++     PD V FTSLI G C +  I +   L  ++   G 
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGF 388

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+T++TLI G C+ G  + A  LF  M     K+G V  PN  T   I+DGLCK   
Sbjct: 389 VPDVVTWTTLIGGFCQAGRPLAAKELFLNMH----KYGQV--PNLQTCAVILDGLCKGNL 442

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A  L   M+  N++ ++V Y+ L+ G C A   N A  L   +  +G+Q +V T+ +
Sbjct: 443 LSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQINVYTYTI 502

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LCK G +D+A  LL  M   G  P+  T++  + G      +  + +    M   G
Sbjct: 503 MIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKG 562



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 16/314 (5%)

Query: 48  TTAKLKESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPP 106
           T + L E +++ ++ D  +L   +   CK   +G +      +A  +  +M+ +    P 
Sbjct: 271 TGSLLDEMIKMGMRLDLQTLNILVDAFCK---EGKVM-----QAKSVIGFMI-LTGEGPD 321

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L          +  + +F  + S G  PD+  +  LI+ +CK   ++    +L 
Sbjct: 322 VFTYNSLIHIYCLQNKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWCKDKNINKVMHLLE 381

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + +  F PD V +T+LI G C   R + A  LF  +  +G  PN+ T + +++GLC+  
Sbjct: 382 EMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGN 441

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A++L E M   N         N V Y+ ++DG+C  G ++ A ELF  +  K +  
Sbjct: 442 LLSEAVSLAEAMEKSNLDL------NIVIYSILLDGMCSAGKLNAAWELFSSLPGKGLQI 495

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY  +I G C     ++A  LLI M + G  PD  T+NV +  L    ++  + + L
Sbjct: 496 NVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYL 555

Query: 347 ELMILRGVNPNTST 360
            +M  +G + + +T
Sbjct: 556 TIMRDKGFSVDAAT 569



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/249 (28%), Positives = 116/249 (46%), Gaps = 7/249 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M++ R   P +  F  L     K K+ + V+ L + +   G  PD+ T+  
Sbjct: 339 NEAMRVFHLMVS-RGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMGFVPDVVTWTT 397

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC+ GR      +   + +    P+      ++ GLC  + + EA +L   ++   
Sbjct: 398 LIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSN 457

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N++ YS L++G+C  G    A  LF  +  G G      + N  TYT +I GLCK+G
Sbjct: 458 LDLNIVIYSILLDGMCSAGKLNAAWELFSSLP-GKG-----LQINVYTYTIMIKGLCKQG 511

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA++L + M++    PD  TYN  + G     +   +   L  M D+G   D  T  
Sbjct: 512 SLDKAEDLLINMEENGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGFSVDAATTE 571

Query: 328 VIMDELCKN 336
           + ++ L  N
Sbjct: 572 ITINYLSTN 580


>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
          Length = 577

 Score =  225 bits (573), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 181/310 (58%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+ M+P P  +  F+ LF  +   KHY  V+SLF+ +   G+       NI
Sbjct: 44  DDAVSLFHRMVRMKPLPS-VIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           + N +C   R+   F VL   L++    + V F +L+ GL AE+++ +A  LF KL +  
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLFKKLVREK 162

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C+PN + Y T++NGL + GHT   L+L   M  GN       KP+  TY+ +ID LCK+
Sbjct: 163 ICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN------TKPDVRTYSIVIDALCKD 216

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +D A  L  +MK KNI P++ TYNSLI G C    W +   LL EM++  + P+V TF
Sbjct: 217 INLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTF 276

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++++D LCK GK+++A  ++  MI +GV P+  T+S +MDG+CL G+V+ A+ +F  +  
Sbjct: 277 SILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRD 336

Query: 387 MGCKHTVFSY 396
            G K  +FSY
Sbjct: 337 KGIKPNIFSY 346



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 160/302 (52%), Gaps = 16/302 (5%)

Query: 104 PPPLTSFNLLFGCL-AKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHG 161
           P  + +FN L G L A+ K  D V+ LFK+L    +  P+   Y  ++N   K G     
Sbjct: 129 PFNVVTFNTLLGGLFAENKVTDAVV-LFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKT 187

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  + +    PD   ++ +I  LC +  +  A  L  ++K     PN+ TY++LI+G
Sbjct: 188 LSLLRIMEQGNTKPDVRTYSIVIDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDG 247

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+ G       L  EM N N        PN  T++ +IDGLCKEG V+ A E+   M +
Sbjct: 248 LCKLGQWEKVKTLLSEMVNLN------INPNVHTFSILIDGLCKEGKVEDADEVMRHMIE 301

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K + PD++TY++++ G+C     + A  +   + D+G++P++ +++++++  CK   + +
Sbjct: 302 KGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAK 361

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG-----CKHT--VF 394
           A +L   +  +G+ P+T T+ST++ G    GR+  AK++F  M  +G     C H+  +F
Sbjct: 362 AMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLF 421

Query: 395 SY 396
            Y
Sbjct: 422 GY 423



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++N L   L K   ++ V +L   + +  + P+++T++ILI+  CK G+V     
Sbjct: 235 PPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADE 294

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V+  ++     PD + +++++ G C   ++  A  +F  L+  G KPN+ +YS LING C
Sbjct: 295 VMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYC 354

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +  +   A+ LF E++          KP+TVTY+TI+ GL + G +  AK++F +M    
Sbjct: 355 KKKNLAKAMQLFGEISQKG------LKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVG 408

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD+  +++L+ G+       EA  L  ++       ++  + V+++ LCKN ++ EA 
Sbjct: 409 PTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCKNDRVREAH 468

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + E +   G+ P+  T++ ++ GFC  G  +  K +   ME  GC     +Y
Sbjct: 469 AIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANNITY 521



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 152/297 (51%), Gaps = 6/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  ++  +   P    +  +   L+K  H +  LSL + +      PD+ TY+I+
Sbjct: 150 DAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGNTKPDVRTYSIV 209

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK   +     +L  + +    P+   + SLI GLC   +  +   L +++     
Sbjct: 210 IDALCKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNI 269

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV T+S LI+GLC+ G    A  +   M           +P+ +TY+ I+DG C  G 
Sbjct: 270 NPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKG------VEPDIITYSAIMDGYCLRGQ 323

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A+ +F  ++DK I P++ +Y+ LI+G+C   +  +A  L  E+  +G++PD VT++ 
Sbjct: 324 VDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYST 383

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           I+  L + G++ +A ++ + M+  G  P+    STL+ G+   G V  A  LF  +E
Sbjct: 384 ILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLE 440



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 139/291 (47%), Gaps = 29/291 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F++L   L K    +    + + +   G+ PD+ TY+ +++ +C  G+V     V
Sbjct: 271 PNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYSAIMDGYCLRGQVDRARRV 330

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      P+  +++ LI G C +  + +A  LF ++   G KP+ +TYST+++GL  
Sbjct: 331 FNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIE 390

Query: 225 TGHTIVALNLFEEMAN---------------GNGKFGVVCKP--------------NTVT 255
            G    A  +F+EM                 G  K+G+V +               N   
Sbjct: 391 VGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISF 450

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YT +I+GLCK   V +A  +F ++    + PDV TYN +I GFC    ++E   +L +M 
Sbjct: 451 YTVVINGLCKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKME 510

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           D G   + +T+NVIM    ++ K+ E    ++ M  RG + + +T   L++
Sbjct: 511 DNGCPANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLIN 561



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 118/232 (50%), Gaps = 6/232 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+++L     K K+    + LF  ++  GL PD  TY+ +++   ++GR+     +
Sbjct: 341 PNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVGRIGDAKKI 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR   TPD    ++L+ G      + EA  LF+KL+      N+  Y+ +INGLC+
Sbjct: 401 FDEMLRVGPTPDICLHSTLLFGYFKYGLVEEAMLLFSKLERNREDTNISFYTVVINGLCK 460

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +FE++ +     G++  P+  TY  +I G C+EG  D+ K +  +M+D   
Sbjct: 461 NDRVREAHAIFEKLPS----IGLI--PDVRTYNVMITGFCREGLFDEVKGILRKMEDNGC 514

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             + +TYN ++ GF  +N  +E    + EM  +G   D  T  V+++ L +N
Sbjct: 515 PANNITYNVIMQGFFRSNKISEIVSFMKEMAGRGFSFDATTTGVLINVLKEN 566



 Score = 38.1 bits (87), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 48/113 (42%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A  LF +M      P V+ ++ L         ++    L  EM   G+       N+
Sbjct: 43  LDDAVSLFHRMVRMKPLPSVIDFSKLFKTMINMKHYSAVVSLFREMRILGIPISDSILNI 102

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           + +  C   ++D A  +L + +  G+  N  TF+TL+ G     +V  A  LF
Sbjct: 103 VTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTLLGGLFAENKVTDAVVLF 155


>gi|357521609|ref|XP_003631093.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525115|gb|AET05569.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 788

 Score =  225 bits (573), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+ + P PPP + F+ L G + +  HY T +SLF +L S G+ P + T+ I
Sbjct: 37  DDAVTCFNRMVRVFP-PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINC+      +  F +L  IL+S + P+ V F ++I G C    I +A      L A G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +  TY TLINGL + G    AL+L +EM   +       +PN V Y+ +IDGLCK+G
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDG 209

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           FV  A  L  Q+ ++ I  D VTYNSLI G C    W E   LL +M+ + V PD  TFN
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++ EA  +L +M  RG  P+  T++ LM+G+C    V+ A+ELF  M   
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 388 GCKHTVFSY 396
           G +  V +Y
Sbjct: 330 GLEPDVLNY 338



 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  ++ L   L K       L L  ++   G+  D  TYN LI+  C +GR      +
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++R    PD   F  LI  LC E RI+EA  +   +   G KP+++TY+ L+ G C 
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  LF  M     K G+  +P+ + Y  +IDG CK   VD+A  LF ++ +KN+
Sbjct: 313 RENVHEARELFNRMV----KRGL--EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P + +YNSLI G C +   +    LL EM      PDVVT+N+++D LCK G++ EA  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L +M+ +GV PN  T++ +MDG+CL   VN AK++F  M   G +  + +Y
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478



 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 164/309 (53%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M+  R   P + ++N+L     KTK  D  + LFK L +  L P + +YN 
Sbjct: 317 HEARELFNRMVK-RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  GR+SH   +L  +  S   PD V +  LI  LC E RI+EA  +   +   G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN++TY+ +++G C   +  VA ++F  M     K G+  +P+ + Y  +I+G CK  
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV----KSGL--EPDILNYNVLINGYCKTE 489

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A  LF +M+ KN+ PD+ +YNSLI G C          LL EM D G  PDV+T+N
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYN 549

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  CK    D+A  L    I+ G+ P+  T   ++D  C   ++  A++    +   
Sbjct: 550 ILLDAFCKTQPFDKAISLFR-QIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMH 608

Query: 388 GCKHTVFSY 396
           GC   V +Y
Sbjct: 609 GCSPNVQTY 617



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 169/319 (52%), Gaps = 30/319 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +T  +L+ GC +  + +  V  L  ++    + PD YT+NILI+  CK GR+     VL 
Sbjct: 231 VTYNSLIDGCCSVGR-WQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA 289

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + +    PD V + +L++G C+   + EA  LF ++   G +P+V+ Y+ LI+G C+T 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 227 HTIVALNLFEEMANGN------------------GKFGVVCK-----------PNTVTYT 257
               A+ LF+E+ N N                  G+   V K           P+ VTY 
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +ID LCKEG + +A  + + M  K + P++VTYN+++ G+C  N+ N A  +   M+  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD++ +NV+++  CK   +DEA  L + M  + + P+ +++++L+DG C  GR+ H 
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 378 KELFVSMESMGCKHTVFSY 396
           +EL   M   G    V +Y
Sbjct: 530 QELLDEMCDSGQSPDVITY 548



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 6/285 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M++ R   P + ++N L       ++      LF R+   GL PD+  YN+LI+ +CK  
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V    V+   +      P   ++ SLI GLC   RI     L  ++      P+V+TY+
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+ LC+ G  + AL +   M     K GV  KPN VTY  ++DG C    V+ AK++F
Sbjct: 410 ILIDALCKEGRILEALGVLVMMM----KKGV--KPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M    + PD++ YN LI+G+C     +EA  L  EM  + + PD+ ++N ++D LC  
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           G++     LL+ M   G +P+  T++ L+D FC T   + A  LF
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLF 568



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 7/258 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++N +        + +    +F R+  +GL PD+  YN+LIN +CK  
Sbjct: 430 MMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTE 489

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V    V+   +      PD  ++ SLI GLC   RI     L  ++   G  P+VITY+
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYN 549

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            L++  C+T     A++LF ++  G         P+  T   I+D LCK   +  A++  
Sbjct: 550 ILLDAFCKTQPFDKAISLFRQIVEG-------IWPDFYTNHAIVDNLCKGEKLKMAEDAL 602

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             +     +P+V TY  LI+  C    + EA  LL +M D    PD +TF +I+  L + 
Sbjct: 603 KHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQR 662

Query: 337 GKMDEASRLLELMILRGV 354
            + D+A +L E MI RG+
Sbjct: 663 NETDKAEKLREEMIARGL 680



 Score = 48.5 bits (114), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C+   VD A   F +M      P    ++ L+        +  A  L  ++  +G+ P +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            TF ++++          A  LL  ++  G  PN  TF+T+++GFC+ G +  A +   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 384 MESMGCKHTVFSY 396
           + + G     F+Y
Sbjct: 151 LLAQGYLFDQFTY 163


>gi|144923530|gb|ABE80159.2| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 695

 Score =  224 bits (571), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 120/309 (38%), Positives = 174/309 (56%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+ + P PPP + F+ L G + +  HY T +SLF +L S G+ P + T+ I
Sbjct: 37  DDAVTCFNRMVRVFP-PPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSIATFTI 95

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINC+      +  F +L  IL+S + P+ V F ++I G C    I +A      L A G
Sbjct: 96  LINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQNLLAQG 155

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +  TY TLINGL + G    AL+L +EM   +       +PN V Y+ +IDGLCK+G
Sbjct: 156 YLFDQFTYGTLINGLSKNGQIKAALHLLQEMEKSS------VQPNLVMYSALIDGLCKDG 209

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           FV  A  L  Q+ ++ I  D VTYNSLI G C    W E   LL +M+ + V PD  TFN
Sbjct: 210 FVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQLLTKMVRENVDPDDYTFN 269

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++ EA  +L +M  RG  P+  T++ LM+G+C    V+ A+ELF  M   
Sbjct: 270 ILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKR 329

Query: 388 GCKHTVFSY 396
           G +  V +Y
Sbjct: 330 GLEPDVLNY 338



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/292 (35%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  ++ L   L K       L L  ++   G+  D  TYN LI+  C +GR      +
Sbjct: 193 PNLVMYSALIDGLCKDGFVSDALGLCSQIGERGILLDAVTYNSLIDGCCSVGRWQEVTQL 252

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++R    PD   F  LI  LC E RI+EA  +   +   G KP+++TY+ L+ G C 
Sbjct: 253 LTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLAMMSKRGEKPDIVTYNALMEGYCS 312

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  LF  M     K G+  +P+ + Y  +IDG CK   VD+A  LF ++ +KN+
Sbjct: 313 RENVHEARELFNRMV----KRGL--EPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNL 366

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P + +YNSLI G C +   +    LL EM      PDVVT+N+++D LCK G++ EA  
Sbjct: 367 VPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALG 426

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L +M+ +GV PN  T++ +MDG+CL   VN AK++F  M   G +  + +Y
Sbjct: 427 VLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNY 478



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 106/309 (34%), Positives = 164/309 (53%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M+  R   P + ++N+L     KTK  D  + LFK L +  L P + +YN 
Sbjct: 317 HEARELFNRMVK-RGLEPDVLNYNVLIDGYCKTKMVDEAMVLFKELCNKNLVPTIASYNS 375

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  GR+SH   +L  +  S   PD V +  LI  LC E RI+EA  +   +   G
Sbjct: 376 LIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYNILIDALCKEGRILEALGVLVMMMKKG 435

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN++TY+ +++G C   +  VA ++F  M     K G+  +P+ + Y  +I+G CK  
Sbjct: 436 VKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMV----KSGL--EPDILNYNVLINGYCKTE 489

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A  LF +M+ KN+ PD+ +YNSLI G C          LL EM D G  PDV+T+N
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYN 549

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  CK    D+A  L    I+ G+ P+  T   ++D  C   ++  A++    +   
Sbjct: 550 ILLDAFCKTQPFDKAISLFR-QIVEGIWPDFYTNHAIVDNLCKGEKLKMAEDALKHLLMH 608

Query: 388 GCKHTVFSY 396
           GC   V +Y
Sbjct: 609 GCSPNVQTY 617



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 168/319 (52%), Gaps = 30/319 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +T  +L+ GC +    +  V  L  ++    + PD YT+NILI+  CK GR+     VL 
Sbjct: 231 VTYNSLIDGCCS-VGRWQEVTQLLTKMVRENVDPDDYTFNILIDALCKEGRILEAQGVLA 289

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + +    PD V + +L++G C+   + EA  LF ++   G +P+V+ Y+ LI+G C+T 
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 227 HTIVALNLFEEMANGN------------------GKFGVVCK-----------PNTVTYT 257
               A+ LF+E+ N N                  G+   V K           P+ VTY 
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +ID LCKEG + +A  + + M  K + P++VTYN+++ G+C  N+ N A  +   M+  
Sbjct: 410 ILIDALCKEGRILEALGVLVMMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKS 469

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD++ +NV+++  CK   +DEA  L + M  + + P+ +++++L+DG C  GR+ H 
Sbjct: 470 GLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHV 529

Query: 378 KELFVSMESMGCKHTVFSY 396
           +EL   M   G    V +Y
Sbjct: 530 QELLDEMCDSGQSPDVITY 548



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 146/285 (51%), Gaps = 6/285 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M++ R   P + ++N L       ++      LF R+   GL PD+  YN+LI+ +CK  
Sbjct: 290 MMSKRGEKPDIVTYNALMEGYCSRENVHEARELFNRMVKRGLEPDVLNYNVLIDGYCKTK 349

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V    V+   +      P   ++ SLI GLC   RI     L  ++      P+V+TY+
Sbjct: 350 MVDEAMVLFKELCNKNLVPTIASYNSLIDGLCNSGRISHVKKLLDEMHGSAQPPDVVTYN 409

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+ LC+ G  + AL +   M     K GV  KPN VTY  ++DG C    V+ AK++F
Sbjct: 410 ILIDALCKEGRILEALGVLVMMM----KKGV--KPNIVTYNAMMDGYCLRNNVNVAKDIF 463

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M    + PD++ YN LI+G+C     +EA  L  EM  + + PD+ ++N ++D LC  
Sbjct: 464 NRMVKSGLEPDILNYNVLINGYCKTEMVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNL 523

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           G++     LL+ M   G +P+  T++ L+D FC T   + A  LF
Sbjct: 524 GRIPHVQELLDEMCDSGQSPDVITYNILLDAFCKTQPFDKAISLF 568



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/258 (29%), Positives = 125/258 (48%), Gaps = 7/258 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++N +        + +    +F R+  +GL PD+  YN+LIN +CK  
Sbjct: 430 MMMKKGVKPNIVTYNAMMDGYCLRNNVNVAKDIFNRMVKSGLEPDILNYNVLINGYCKTE 489

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V    V+   +      PD  ++ SLI GLC   RI     L  ++   G  P+VITY+
Sbjct: 490 MVDEAIVLFKEMRHKNLIPDIASYNSLIDGLCNLGRIPHVQELLDEMCDSGQSPDVITYN 549

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            L++  C+T     A++LF ++  G         P+  T   I+D LCK   +  A++  
Sbjct: 550 ILLDAFCKTQPFDKAISLFRQIVEG-------IWPDFYTNHAIVDNLCKGEKLKMAEDAL 602

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             +     +P+V TY  LI+  C    + EA  LL +M D    PD +TF +I+  L + 
Sbjct: 603 KHLLMHGCSPNVQTYTILINALCKDGSFGEAMLLLSKMEDNDRPPDAITFEIIIGVLLQR 662

Query: 337 GKMDEASRLLELMILRGV 354
            + D+A +L E MI RG+
Sbjct: 663 NETDKAEKLREEMIARGL 680



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 31/133 (23%), Positives = 59/133 (44%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C+   VD A   F +M      P    ++ L+        +  A  L  ++  +G+ P +
Sbjct: 31  CRFRNVDDAVTCFNRMVRVFPPPPTSVFDKLLGAIVRMGHYPTAISLFTQLQSKGISPSI 90

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            TF ++++          A  LL  ++  G  PN  TF+T+++GFC+ G +  A +   +
Sbjct: 91  ATFTILINCYFHQSHTAFAFSLLATILKSGYQPNLVTFNTIINGFCINGMIFKALDFCQN 150

Query: 384 MESMGCKHTVFSY 396
           + + G     F+Y
Sbjct: 151 LLAQGYLFDQFTY 163


>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 543

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 114/307 (37%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A   +  M+ M+P P  +  FNLLFG +AK KHY T +SL K ++  G+ P++ T+NI+I
Sbjct: 10  ALDFYHKMVTMKPFPC-VKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNIVI 68

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           NC C++     GF VLG + +    P  V FT+++ GLC E  + +A      LK  G +
Sbjct: 69  NCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYE 128

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            +  T   +INGLC+ GH+  AL+  ++M   N      C  +   Y+ ++DGLCK+G V
Sbjct: 129 SDRYTRGAIINGLCKVGHSSAALSYLKKMEEQN------CNLDVTAYSAVVDGLCKDGMV 182

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A +LF QM  K I P++ TYN LIHG C  + W EA  LL  MM +G+ PDV TFNVI
Sbjct: 183 FEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 242

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
                K G +  A  +   M   G+  N  T+++++   C+  ++  A E+F  M   GC
Sbjct: 243 AGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGC 302

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 303 LPNIVTY 309



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   +   P L ++N L   L     +     L   +   G+ PD+ T+N++
Sbjct: 184 EALDLFSQMTG-KGIQPNLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 242

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              F K G +S    +   +       + V + S+I   C  +++ +A  +F  +   GC
Sbjct: 243 AGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGC 302

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY++LI+G C T +   A+    EM N NG       P+ VT++T+I G CK G 
Sbjct: 303 LPNIVTYNSLIHGWCETKNMNKAMYFLGEMVN-NG-----LDPDVVTWSTLIGGFCKAGK 356

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKELF  M      PD+ T   ++ G    +  +EA  L  E+       D++ +++
Sbjct: 357 PVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSI 416

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I++ +C +GK+++A  L   +  +GV  +  T++ +++G C  G ++ A++L + ME  G
Sbjct: 417 ILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG 476

Query: 389 C 389
           C
Sbjct: 477 C 477



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +T+++ +   L K       L LF ++   G+ P+L+TYN LI+  C   R      +L 
Sbjct: 166 VTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYNCLIHGLCNFDRWKEAAPLLA 225

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++R    PD   F  +         I  A ++F+ +   G + NV+TY+++I   C   
Sbjct: 226 NMMRKGIMPDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLN 285

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F+ M          C PN VTY ++I G C+   ++KA     +M +  ++P
Sbjct: 286 QMKDAMEVFDLMIRKG------CLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDP 339

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVT+++LI GFC A     A  L   M   G  PD+ T  +I+D L K     EA  L 
Sbjct: 340 DVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLF 399

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +     + +   +S +++G C +G++N A ELF  + S G K  V +Y
Sbjct: 400 RELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTY 449



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 145/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN++ G   KT       S+F  +   G+  ++ TYN +I   C + ++     V
Sbjct: 234 PDVQTFNVIAGRFLKTGMISRAKSIFSFMGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEV 293

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    P+ V + SLI G C    + +A     ++   G  P+V+T+STLI G C+
Sbjct: 294 FDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCK 353

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  LF  M + +G+      P+  T   I+DGL K  F  +A  LF +++  N 
Sbjct: 354 AGKPVAAKELFFVM-HKHGQL-----PDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNS 407

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + D++ Y+ +++G C +   N+A  L   +  +GV+ DVVT+N++++ LCK G +D+A  
Sbjct: 408 DLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED 467

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL  M   G  P+  T++  + G      ++ + +  + M+  G
Sbjct: 468 LLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKG 511



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 146/291 (50%), Gaps = 8/291 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF +M +M      +T +N + G           + +F  +   G  P++ TYN LI+ +
Sbjct: 258 IFSFMGHMGIEHNVVT-YNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGW 316

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+   ++     LG ++ +   PD V +++LI G C   + + A  LF  +   G  P++
Sbjct: 317 CETKNMNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDL 376

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            T + +++GL +      A++LF E+   N    ++       Y+ I++G+C  G ++ A
Sbjct: 377 QTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDII------IYSIILNGMCSSGKLNDA 430

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            ELF  +  K +  DVVTYN +I+G C     ++A  LL++M + G  PD  T+NV +  
Sbjct: 431 LELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQG 490

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           L +  ++ ++++ L  M  +G   N +T   L++ F    + N A ++F+ 
Sbjct: 491 LLRRYEISKSTKYLMFMKGKGFRANATTTKLLINYFS-ANKENRAFQVFLQ 540



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 57/120 (47%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A + + +M      P V  +N L         +  A  L+  M   GV+P+V T N+
Sbjct: 7   VDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVSTHNI 66

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LC+         +L LM   GV P+  TF+T+++G C+ G V  A      ++ MG
Sbjct: 67  VINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMG 126


>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 525

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 119/297 (40%), Positives = 167/297 (56%), Gaps = 6/297 (2%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M P PP    F  LFG + K KHY T +SL K   S G+ PD++T  I+INC C +    
Sbjct: 1   MNPLPPD-KDFATLFGVIVKMKHYATAISLIKHTYSLGVKPDVHTLTIVINCLCHLKHTV 59

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
            GF VLG + +    P  V F +LI GLCAE  +  AA     L+  G + N  T+ T+I
Sbjct: 60  FGFSVLGAMFKIGVEPTVVTFATLINGLCAEGNVGAAARFADSLEDMGYESNSYTHGTII 119

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           NGLC+ G T  A++  E++   N  F ++     + Y+TI+D LCK+G +  A   F  M
Sbjct: 120 NGLCKVGDTAGAISYLEKIEGRNRGFDLL-----IAYSTIMDSLCKDGMLCLALNFFSGM 174

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             K I PD+V YNSLIHG C    WNEA  LL  MM +G+ P+V TFNV++D  CK GK+
Sbjct: 175 TCKGIQPDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKI 234

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             A  ++  M+  GV P+  T+++++ G CL  ++N A ++F  M   G    V +Y
Sbjct: 235 SRAKTIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTY 291



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L     ++   +L   +   G+ P++ T+N+L++ FCK G++S    +
Sbjct: 181 PDLVAYNSLIHGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTI 240

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++     PD V + S+I G C  S++ +A  +F  +   G  PNV+TYS+LI+G C+
Sbjct: 241 MCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCK 300

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T +   A+ + +EM N NG        + VT++T+I G CK G  + A ELF  M + + 
Sbjct: 301 TRNINKAIFVLDEMVN-NG-----LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQ 354

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ T   ++ G       +EA  L  +M    ++ ++VT+N+++D +C  GK ++A  
Sbjct: 355 LPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDARE 414

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   +  +G+  +   ++T++ G C  G ++ A++L + ME  GC    F+Y
Sbjct: 415 LFSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTY 466



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/258 (31%), Positives = 128/258 (49%), Gaps = 6/258 (2%)

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           F  L  Y+ +++  CK G +         +      PD VA+ SLI GLC+  R  EA  
Sbjct: 145 FDLLIAYSTIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATT 204

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L   +   G  PNV T++ L++  C+ G    A  +   M +      V  +P+ VTY +
Sbjct: 205 LLGNMMRKGIMPNVQTFNVLVDNFCKEGKISRAKTIMCFMVH------VGVEPDVVTYNS 258

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I G C    ++ A ++F  M  K + P+VVTY+SLIHG+C   + N+A  +L EM++ G
Sbjct: 259 VISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGWCKTRNINKAIFVLDEMVNNG 318

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +  DVVT++ ++   CK G+ + A  L   M      PN  T + ++DG       + A 
Sbjct: 319 LNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTCAIILDGLFKCQFHSEAI 378

Query: 379 ELFVSMESMGCKHTVFSY 396
            LF  ME M  +  + +Y
Sbjct: 379 SLFRKMEKMNLELNIVTY 396



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           +M+++   P  +T  +++ G    ++  D V  +F+ +   GL P++ TY+ LI+ +CK 
Sbjct: 243 FMVHVGVEPDVVTYNSVISGHCLLSQMNDAV-KVFELMIHKGLLPNVVTYSSLIHGWCKT 301

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
             ++    VL  ++ +    D V +++LI G C   R   A  LF  +      PN+ T 
Sbjct: 302 RNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPEAAIELFCTMHEHHQLPNLQTC 361

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           + +++GL +      A++LF +M   N +       N VTY  ++DG+C  G  + A+EL
Sbjct: 362 AIILDGLFKCQFHSEAISLFRKMEKMNLEL------NIVTYNIVLDGMCSFGKFNDAREL 415

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F  +  K I  DVV Y ++I G C     ++A  LL++M + G  P+  T+NV++  L +
Sbjct: 416 FSCLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNVLVRGLLQ 475

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
              +  +++ L LM  +G++ + +T   L+  F    + N A ++F+ 
Sbjct: 476 RYDISRSTKYLMLMKGKGLSADATTTELLISYFS-ANKENSALQVFLQ 522


>gi|242092708|ref|XP_002436844.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
 gi|241915067|gb|EER88211.1| hypothetical protein SORBIDRAFT_10g009870 [Sorghum bicolor]
          Length = 755

 Score =  223 bits (569), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 181/319 (56%), Gaps = 20/319 (6%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK---TK 121
            LE+ +  R +S   G       +EA  +FD +L+    P  + +FN L   +++   + 
Sbjct: 14  ELERVIASRARSGSLG------LDEALKLFDELLHC-ARPASVRAFNQLLTVVSRAGCSS 66

Query: 122 HYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
             + V+SLF R+    S+ + P+  TY+ILI CFC+MGR+ HGF   G IL++ +  + +
Sbjct: 67  ASERVVSLFTRMARECSSKVAPNACTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVI 126

Query: 179 AFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
             + L+KGLC   R+ EA   L  ++  FGC P+V+ Y+T+ING  R G    A NLF E
Sbjct: 127 VISQLLKGLCDAKRVDEATDILLLRMSEFGCPPDVVAYNTVINGFFREGQVEKAYNLFLE 186

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M +          PN VTYTT+IDGLCK   VD+AK +F QM D+ + PD  TYN LIHG
Sbjct: 187 MMDQG------IPPNVVTYTTVIDGLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHG 240

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +     W E   +L EM   G++PD +T+ +++D LCKNG+  EA    + M  +G+ P+
Sbjct: 241 YLSTGKWKEVVQMLEEMSTHGLEPDCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPD 300

Query: 358 TSTFSTLMDGFCLTGRVNH 376
            + ++ L+ G+   G ++ 
Sbjct: 301 VAIYAILLHGYATKGALSE 319



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 156/313 (49%), Gaps = 7/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A   + A  +F  M++ R   P   ++N L      T  +  V+ + + +++ GL PD  
Sbjct: 209 AQVVDRAKGVFQQMID-RGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEPDCI 267

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY +L++  CK GR     +    + R    PD   +  L+ G   +  + E  +    +
Sbjct: 268 TYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIYAILLHGYATKGALSEMHSFLDLM 327

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G  PN   ++ +     +      A+++F +M            P+ V++  +ID L
Sbjct: 328 VGNGVSPNRRIFNIMFCAYAKKAMIEEAMHIFNKMRQQG------LSPDVVSFGALIDAL 381

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G VD A   F QM ++ + P++  ++SL++G C    W +A  L  E++DQG+  D 
Sbjct: 382 CKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEELFFEVLDQGICVDA 441

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V FN +M  LC  G++ EA RL++LMI  GV PN  +++TL+ G CLTGR++ A +L   
Sbjct: 442 VFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHCLTGRIDEAAKLLDV 501

Query: 384 MESMGCKHTVFSY 396
           M S G K   F+Y
Sbjct: 502 MVSNGLKPNEFTY 514



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 166/353 (47%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T    +E     D M+    SP     FN++F   AK    +  + +F ++   GL
Sbjct: 309 HGYATKGALSEMHSFLDLMVGNGVSPNRRI-FNIMFCAYAKKAMIEEAMHIFNKMRQQGL 367

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--------- 189
            PD+ ++  LI+  CK+GRV    +   +++    TP+   F+SL+ GLC          
Sbjct: 368 SPDVVSFGALIDALCKLGRVDDAVLQFNQMINEGVTPNIFVFSSLVYGLCTVGKWEKAEE 427

Query: 190 --------------------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R+MEA  L   +   G +PNVI+Y+TL+ G C
Sbjct: 428 LFFEVLDQGICVDAVFFNTLMCNLCNEGRVMEAQRLIDLMIRVGVRPNVISYNTLVAGHC 487

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            TG    A  L + M + NG      KPN  TYT ++ G CK   VD A  LF +M  K 
Sbjct: 488 LTGRIDEAAKLLDVMVS-NG-----LKPNEFTYTILLRGYCKARRVDDAYSLFREMLMKG 541

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P V TYN+++HG      ++EAN L + M++   + D+ T+N+I++ LCKN  +DEA 
Sbjct: 542 VTPVVATYNTILHGLFQTGRFSEANELYLNMINSRTKCDIYTYNIILNGLCKNNFVDEAF 601

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++   +  +    ++ TF+ ++      GR   A +LF ++ + G    V +Y
Sbjct: 602 KMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATISAYGLVPDVVTY 654



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 135/280 (48%), Gaps = 13/280 (4%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG------RVSHGFVVLGRILRSCFTPDA 177
           D  L LF  L        +  +N L+    + G      RV   F  + R   S   P+A
Sbjct: 31  DEALKLFDELLHCARPASVRAFNQLLTVVSRAGCSSASERVVSLFTRMARECSSKVAPNA 90

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN-LFE 236
             ++ LI   C   R+    A F  +   G + NVI  S L+ GLC       A + L  
Sbjct: 91  CTYSILIGCFCRMGRLEHGFAAFGLILKTGWRVNVIVISQLLKGLCDAKRVDEATDILLL 150

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            M+    +FG  C P+ V Y T+I+G  +EG V+KA  LFL+M D+ I P+VVTY ++I 
Sbjct: 151 RMS----EFG--CPPDVVAYNTVINGFFREGQVEKAYNLFLEMMDQGIPPNVVTYTTVID 204

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C A   + A  +  +M+D+GV+PD  T+N ++      GK  E  ++LE M   G+ P
Sbjct: 205 GLCKAQVVDRAKGVFQQMIDRGVKPDNGTYNCLIHGYLSTGKWKEVVQMLEEMSTHGLEP 264

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  T++ L+D  C  GR   A+  F SM   G K  V  Y
Sbjct: 265 DCITYALLLDYLCKNGRCREARLFFDSMFRKGIKPDVAIY 304



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 120/242 (49%), Gaps = 6/242 (2%)

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            G+ P++ +YN L+   C  GR+     +L  ++ +   P+   +T L++G C   R+ +
Sbjct: 470 VGVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTILLRGYCKARRVDD 529

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A +LF ++   G  P V TY+T+++GL +TG    A  L+  M N         K +  T
Sbjct: 530 AYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSR------TKCDIYT 583

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  I++GLCK  FVD+A ++F ++  K+   D VT+N +I          +A  L   + 
Sbjct: 584 YNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNIMIGALLKGGRKEDAMDLFATIS 643

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G+ PDVVT+ +I + L + G + E   L   M   G  PN+   + L+      G ++
Sbjct: 644 AYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNALVRRLLHRGDIS 703

Query: 376 HA 377
            A
Sbjct: 704 RA 705



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 123/292 (42%), Gaps = 7/292 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+ +    P + S+N L      T   D    L   + S GL P+ +TY IL
Sbjct: 459 EAQRLIDLMIRV-GVRPNVISYNTLVAGHCLTGRIDEAAKLLDVMVSNGLKPNEFTYTIL 517

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +CK  RV   + +   +L    TP    + +++ GL    R  EA  L+  +     
Sbjct: 518 LRGYCKARRVDDAYSLFREMLMKGVTPVVATYNTILHGLFQTGRFSEANELYLNMINSRT 577

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K ++ TY+ ++NGLC+      A  +F  + + + +       ++VT+  +I  L K G 
Sbjct: 578 KCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQL------DSVTFNIMIGALLKGGR 631

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A +LF  +    + PDVVTY  +           E + L   M   G  P+    N 
Sbjct: 632 KEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSGTAPNSHMLNA 691

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++  L   G +  A   L  +  +  +   ST S L+  +       HAK L
Sbjct: 692 LVRRLLHRGDISRAGVYLYKLDEKNFSLEASTTSMLISLYSRGEYQPHAKSL 743



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  ++  M+N R +   + ++N++   L K    D    +F+RL S     D  T+NI
Sbjct: 563 SEANELYLNMINSR-TKCDIYTYNIILNGLCKNNFVDEAFKMFRRLCSKDPQLDSVTFNI 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I    K GR      +   I      PD V +  + + L  E  + E   LF+ ++  G
Sbjct: 622 MIGALLKGGRKEDAMDLFATISAYGLVPDVVTYRLIAENLIEEGSLGEFDGLFSAMEKSG 681

Query: 208 CKPNVITYSTLINGLCR 224
             PN    S ++N L R
Sbjct: 682 TAPN----SHMLNALVR 694


>gi|356529509|ref|XP_003533333.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 450

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 119/299 (39%), Positives = 177/299 (59%), Gaps = 7/299 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN +    A  KHY T +SL  RL   G+ PD +T NI
Sbjct: 52  DDAVSQFNSMLCMRHTPP-VIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNI 110

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+NCFC MG+++ GF VL +IL+  + P  + FT+LIKGLC + ++ +A     KL A G
Sbjct: 111 LMNCFCHMGQINFGFSVLAKILKRGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQG 170

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K + ++Y TLING+C+ G T  A+ L  ++       G + KPN   Y TIID LCK  
Sbjct: 171 IKFDQVSYGTLINGVCKIGDTRGAIKLVRKID------GRLTKPNVEMYNTIIDALCKYQ 224

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  LF +M  K I+ +VV+YN +I GFC +   +EA  L  EM  + + P +VT+ 
Sbjct: 225 LVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYG 284

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +MD LCK+G++     L++ M  RG+  +  T+++L+DG C  G ++ A  LF  M+ 
Sbjct: 285 SLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKD 343



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 144/289 (49%), Gaps = 8/289 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   +F  L   L      +  L    +L + G+  D  +Y  LIN  CK+G    
Sbjct: 134 RGYQPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGTLINGVCKIGDTRG 193

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++ +I      P+   + ++I  LC    + EA  LF+++ A G   NV++Y+ +I 
Sbjct: 194 AIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIK 253

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C++     ALNLF+EM   N        P  VTY +++DGLCK G +    EL  +M 
Sbjct: 254 GFCKSKMVDEALNLFKEMHQKN------MVPTIVTYGSLMDGLCKSGRISYVWELIDEMH 307

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D+ I  DV+TYNSLI G C     + A  L  +M D   + D +TF +++D LCK G++ 
Sbjct: 308 DRGIPADVITYNSLIDGLCKNGHLDRAIALFNKMKD--XRFDRLTFTILLDGLCKGGRLK 365

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +A  + + ++ +  + +   ++ +++G+C  G +  A  +   ME  GC
Sbjct: 366 DAQEVFQDLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGC 414



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 133/257 (51%), Gaps = 8/257 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R + P +  +N +   L K +       LF  + + G+  ++ +YNI+I  FCK   
Sbjct: 201 IDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKGISANVVSYNIMIKGFCKSKM 260

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     +   + +    P  V + SL+ GLC   RI     L  ++   G   +VITY++
Sbjct: 261 VDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVWELIDEMHDRGIPADVITYNS 320

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC+ GH   A+ LF +M +         + + +T+T ++DGLCK G +  A+E+F 
Sbjct: 321 LIDGLCKNGHLDRAIALFNKMKD--------XRFDRLTFTILLDGLCKGGRLKDAQEVFQ 372

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            +  K  + DV  YN +I+G+C      EA  +  +M D G  P  VTF +I++ L +  
Sbjct: 373 DLLTKEYDLDVYPYNVMINGYCKQGLLEEALTMRSKMEDNGCIPSAVTFEIIINALFEKD 432

Query: 338 KMDEASRLLELMILRGV 354
           + D+A +LL  MI RG+
Sbjct: 433 ENDKAEKLLHEMIARGL 449



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 41/258 (15%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           TP  + F  ++           A +L  +L+  G +P+  T + L+N  C  G      +
Sbjct: 67  TPPVIQFNKILDSFAXMKHYSTAVSLSHRLELKGIQPDFFTLNILMNCFCHMGQINFGFS 126

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +  ++     K G   +P+T+T+TT+I GLC +G V+KA     ++  + I  D V+Y +
Sbjct: 127 VLAKIL----KRGY--QPHTITFTTLIKGLCLKGQVNKALHFHDKLLAQGIKFDQVSYGT 180

Query: 294 LIHGFCYAND-----------------------------------WNEANCLLIEMMDQG 318
           LI+G C   D                                    +EA  L  EM  +G
Sbjct: 181 LINGVCKIGDTRGAIKLVRKIDGRLTKPNVEMYNTIIDALCKYQLVSEAYGLFSEMTAKG 240

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +  +VV++N+++   CK+  +DEA  L + M  + + P   T+ +LMDG C +GR+++  
Sbjct: 241 ISANVVSYNIMIKGFCKSKMVDEALNLFKEMHQKNMVPTIVTYGSLMDGLCKSGRISYVW 300

Query: 379 ELFVSMESMGCKHTVFSY 396
           EL   M   G    V +Y
Sbjct: 301 ELIDEMHDRGIPADVITY 318


>gi|262316881|emb|CAZ44330.1| homologue to restoring pentatricopeptide repeat protein [Raphanus
           sativus]
          Length = 686

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/380 (34%), Positives = 205/380 (53%), Gaps = 39/380 (10%)

Query: 49  TAKLKESLRLTVKDRASLEQ-FLKERCK-SSGQGDITAITPNEAFCIFDYMLNMRPSPPP 106
           T  ++++L    +D  S E  F  E  K  SG  +I  +  ++A  +F YM+  RP P  
Sbjct: 24  TRSIRDTLAKKSRDGESDEAGFGGESLKLQSGFHEIKGL--DDAIDLFGYMVRSRPLPS- 80

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  F  L G + +    D V+SL K++    +  + Y++ IL+ CFC   ++       G
Sbjct: 81  VIDFCKLMGVVVRMGRPDVVISLHKKMEMLRMPCNAYSFTILMKCFCSCSKLPFALSTFG 140

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I +  F P  V F +L+ GLC E RI EA  LF ++    CKPNV+T++TL+NGLCR G
Sbjct: 141 KITKLGFHPTVVTFNTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREG 196

Query: 227 HTIVALNLFEEMANGNGK-----FGVV----CK---------------------PNTVTY 256
             + A+ L + M     +     +G +    CK                     PN V Y
Sbjct: 197 RVVEAVALLDRMLEDGLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIIPNVVIY 256

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            TIIDGL K+G    A  LF++M++K I PD+VTYN +I+GFC +  W++A  LL EM++
Sbjct: 257 NTIIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLE 316

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + PDVVTF+ +++   K GK  EA  L + M+ R + P+T T+S+++DGFC   R++ 
Sbjct: 317 RKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDA 376

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+ +F    + GC   + ++
Sbjct: 377 AEHMFYLTPTKGCSPDIITF 396



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 152/310 (49%), Gaps = 23/310 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
           R   P + +F+ L     K   +     L+  +    + P   TY+ +I+ FCK  R+  
Sbjct: 317 RKINPDVVTFSALINAFVKEGKFFEAEELYDEMLPRSIIPSTVTYSSMIDGFCKQNRLDA 376

Query: 159 -SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F +     + C +PD + F +LI G C   R+ +   L  ++   G   N ITY+T
Sbjct: 377 AEHMFYLTPT--KGC-SPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTT 433

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G    A +L +EM +       VC PN VT  T++DGLC  G +  A E+F 
Sbjct: 434 LIHGFCQVGDLNAAQDLLQEMISSG-----VC-PNVVTCNTLLDGLCDNGKLKDALEMFK 487

Query: 278 QMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            M+              + PDV TYN LI G      + EA  L  EM  +G+ PD +T+
Sbjct: 488 AMQKSKMDIDASRPFNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITY 547

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++D LCK  ++DEA+++ + M  +  +P+  TF+TL+ G+C  G V+   ELF  M  
Sbjct: 548 SSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQ 607

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 608 RGIVADAITY 617



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 154/298 (51%), Gaps = 8/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA  + D ML     P  +T   ++ G + K     + L+L +++     + P++  YN 
Sbjct: 200 EAVALLDRMLEDGLQPNQITYGTIVDG-MCKMGDTVSALNLLRKMEEVSHIIPNVVIYNT 258

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   K GR S    +   +      PD V +  +I G C   R  +A  L  ++    
Sbjct: 259 IIDGLWKDGRHSDAHNLFIEMQEKEIFPDIVTYNCMINGFCISGRWSDAEQLLQEMLERK 318

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+T+S LIN   + G    A  L++EM   +        P+TVTY+++IDG CK+ 
Sbjct: 319 INPDVVTFSALINAFVKEGKFFEAEELYDEMLPRS------IIPSTVTYSSMIDGFCKQN 372

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ +F     K  +PD++T+N+LI G+C A   ++   LL EM + G+  + +T+ 
Sbjct: 373 RLDAAEHMFYLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYT 432

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++   C+ G ++ A  LL+ MI  GV PN  T +TL+DG C  G++  A E+F +M+
Sbjct: 433 TLIHGFCQVGDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQ 490



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 153/306 (50%), Gaps = 8/306 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML  R   P   +++ +     K    D    +F    + G  PD+ T+N L
Sbjct: 341 EAEELYDEMLP-RSIIPSTVTYSSMIDGFCKQNRLDAAEHMFYLTPTKGCSPDIITFNTL 399

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +C+  RV  G  +L  +  +    + + +T+LI G C    +  A  L  ++ + G 
Sbjct: 400 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMISSGV 459

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDG 262
            PNV+T +TL++GLC  G    AL +F+ M       + +  F  V +P+  TY  +I G
Sbjct: 460 CPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGV-EPDVQTYNILICG 518

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  EG   +A+EL+ +M  + I PD +TY+S+I G C  +  +EA  +   M  +   PD
Sbjct: 519 LINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPD 578

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVTFN ++   CK G +D+   L   M  RG+  +  T+ TL+ GF     ++ A ++F 
Sbjct: 579 VVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQ 638

Query: 383 SMESMG 388
            M S G
Sbjct: 639 EMISSG 644



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 17/301 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y+   +   P + +FN L     + K  D  + L   +   GL  +  TY  LI+ FC++
Sbjct: 382 YLTPTKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 441

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   P+ V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 442 GDLNAAQDLLQEMISSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRP 501

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI GL   G  + A  L+EEM +     G+V  P+T+TY+++IDGLC
Sbjct: 502 FNGVEPDVQTYNILICGLINEGKFLEAEELYEEMPHR----GIV--PDTITYSSMIDGLC 555

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +PDVVT+N+LI G+C A   ++   L  EM  +G+  D +
Sbjct: 556 KQSRLDEATQMFDSMGSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAI 615

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+  ++    K   +D A  + + MI  GV P+T T   ++ G      +  A  +   +
Sbjct: 616 TYITLIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDL 675

Query: 385 E 385
           +
Sbjct: 676 Q 676



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 18/228 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----------GLFPDLYTYNILINCFC 153
           P + + N L   L         L +FK +  +           G+ PD+ TYNILI    
Sbjct: 461 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASRPFNGVEPDVQTYNILICGLI 520

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+      +   +      PD + ++S+I GLC +SR+ EA  +F  + +    P+V+
Sbjct: 521 NEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPDVV 580

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++TLI G C+ G     L LF EM    G+ G+V   + +TY T+I G  K   +D A 
Sbjct: 581 TFNTLITGYCKAGMVDDGLELFCEM----GQRGIVA--DAITYITLIYGFRKVDNIDGAL 634

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQ 320
           ++F +M    + PD +T  +++ G     +   A  +L ++ M  G Q
Sbjct: 635 DIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQMSVGYQ 682



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/155 (25%), Positives = 69/155 (44%), Gaps = 1/155 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M +    P  +T  +++ G L K    D    +F  + S    PD+ T+N L
Sbjct: 527 EAEELYEEMPHRGIVPDTITYSSMIDG-LCKQSRLDEATQMFDSMGSKSFSPDVVTFNTL 585

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +CK G V  G  +   + +     DA+ + +LI G      I  A  +F ++ + G 
Sbjct: 586 ITGYCKAGMVDDGLELFCEMGQRGIVADAITYITLIYGFRKVDNIDGALDIFQEMISSGV 645

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
            P+ IT   ++ GL        A+ + E++    G
Sbjct: 646 YPDTITIRNMLTGLWSKEELERAVAMLEDLQMSVG 680



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +FN L     K    D  L LF  +   G+  D  TY  
Sbjct: 561 DEATQMFDSM-GSKSFSPDVVTFNTLITGYCKAGMVDDGLELFCEMGQRGIVADAITYIT 619

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI  F K+  +     +   ++ S   PD +   +++ GL ++  +  A A+   L+
Sbjct: 620 LIYGFRKVDNIDGALDIFQEMISSGVYPDTITIRNMLTGLWSKEELERAVAMLEDLQ 676


>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
 gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
          Length = 497

 Score =  223 bits (569), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 110/266 (41%), Positives = 169/266 (63%), Gaps = 8/266 (3%)

Query: 133 LNSTGLFPDLYTYNILINCFC--KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           ++ + + PD+YT  ILINCFC          F VLG + +    P+ V F++L+ GL ++
Sbjct: 1   MDLSNIRPDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSK 60

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           ++I++A  LF ++   G +P+VITYST+INGLC+ G T +A+ L ++M          CK
Sbjct: 61  AKIIDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKG------CK 114

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           PN V Y+TIID LCK+  + +A E   +M ++ I+P+VVTY+S++HGFC     NEA  L
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             +M+++ V PD VTFN+++D L K G + EA  + E MI +GV PN +T++ LMDG+C 
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             +++ A++LF  M   GC  +V SY
Sbjct: 235 QSQMDEAQKLFNIMVRKGCAPSVRSY 260



 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 106/307 (34%), Positives = 170/307 (55%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   M  +   P  +T   LL G  +K K  D V  LF  +   G  PD+ TY+ +I
Sbjct: 31  AFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV-KLFDEMVKMGYEPDVITYSTII 89

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CKMG  +    +L ++      P+ V ++++I  LC +  I EA    +++   G  
Sbjct: 90  NGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGIS 149

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNV+TYS++++G C  G +  A +LF++M   N        P+TVT+  ++DGL KEG +
Sbjct: 150 PNVVTYSSILHGFCNLGRSNEATSLFKQMVERN------VMPDTVTFNILVDGLSKEGMI 203

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A+ +F  M +K + P+V TYN+L+ G+C  +  +EA  L   M+ +G  P V ++N++
Sbjct: 204 LEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   CK+G++DEA  LL  M  + + P+T T+STLM GFC  GR   A++L   M S G 
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 324 LPDLMTY 330



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 151/286 (52%), Gaps = 7/286 (2%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           N+RP    LT     F C +   H+    S+   +   GL P+  T++ L+N      ++
Sbjct: 5   NIRPDVYTLTILINCF-CHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKI 63

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +   +++  + PD + ++++I GLC       A  L  K++  GCKPNV+ YST+
Sbjct: 64  IDAVKLFDEMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTI 123

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+ LC+      A+    EM N          PN VTY++I+ G C  G  ++A  LF Q
Sbjct: 124 IDSLCKDKLITEAMEFLSEMVNRG------ISPNVVTYSSILHGFCNLGRSNEATSLFKQ 177

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M ++N+ PD VT+N L+ G        EA C+   M+++GV+P+V T+N +MD  C   +
Sbjct: 178 MVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQ 237

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           MDEA +L  +M+ +G  P+  +++ L+ G C +GR++ AK L   M
Sbjct: 238 MDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEM 283



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K K     +     + + G+ P++ TY+ +++ FC +GR +    +
Sbjct: 115 PNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSL 174

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     PD V F  L+ GL  E  I+EA  +F  +   G +PNV TY+ L++G C 
Sbjct: 175 FKQMVERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCS 234

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF  M          C P+  +Y  +I G CK G +D+AK L  +M  K +
Sbjct: 235 QSQMDEAQKLFNIMVRKG------CAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKAL 288

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY++L+ GFC      +A  LL EM   G+ PD++T+++++D LCK G +DEA  
Sbjct: 289 TPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFE 348

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M    + PN   ++ L+ G C  G++  A+ELF ++   G +  V +Y
Sbjct: 349 LLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTY 400



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/278 (33%), Positives = 144/278 (51%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA C+F+ M+  +   P + ++N L          D    LF  +   G  P + +YNIL
Sbjct: 205 EAQCVFETMIE-KGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNIL 263

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   CK GR+     +L  +     TPD V +++L+KG C + R  +A  L  +++++G 
Sbjct: 264 IKGHCKSGRIDEAKGLLAEMSHKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRSYGL 323

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TYS +++GLC+ GH   A  L + M           +PN   YT +I G+C  G 
Sbjct: 324 LPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESK------IEPNIFIYTILIQGMCNFGK 377

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A+ELF  +  K I PDVVTY  +I G       NEA  L  +M   G  P+  T+NV
Sbjct: 378 LEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNV 437

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           I+    +NG    A RL+E M+ RG + ++STF  L D
Sbjct: 438 IIQGFLRNGDTSNAGRLIEEMVGRGFSADSSTFQMLSD 475



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M+  R   P   +FN+L   L+K         +F+ +   G+ P++ TYN 
Sbjct: 169 NEATSLFKQMVE-RNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNA 227

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C   ++     +   ++R    P   ++  LIKG C   RI EA  L  ++    
Sbjct: 228 LMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKGHCKSGRIDEAKGLLAEMSHKA 287

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYSTL+ G C+ G    A  L EEM +    +G++  P+ +TY+ ++DGLCK+G
Sbjct: 288 LTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRS----YGLL--PDLMTYSIVLDGLCKQG 341

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A EL   M++  I P++  Y  LI G C       A  L   +  +G+QPDVVT+ 
Sbjct: 342 HLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYT 401

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++  L K G  +EA  L   M + G  PN+ T++ ++ GF   G  ++A  L   M   
Sbjct: 402 VMISGLLKGGLSNEACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGR 461

Query: 388 G 388
           G
Sbjct: 462 G 462



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 155/301 (51%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA      M+N   SP  +T  ++L G        +   SLFK++    + PD  T+NIL
Sbjct: 135 EAMEFLSEMVNRGISPNVVTYSSILHG-FCNLGRSNEATSLFKQMVERNVMPDTVTFNIL 193

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++   K G +     V   ++     P+   + +L+ G C++S++ EA  LF  +   GC
Sbjct: 194 VDGLSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGC 253

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V +Y+ LI G C++G    A  L  EM++          P+TVTY+T++ G C++G 
Sbjct: 254 APSVRSYNILIKGHCKSGRIDEAKGLLAEMSHK------ALTPDTVTYSTLMKGFCQDGR 307

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              A++L  +M+   + PD++TY+ ++ G C     +EA  LL  M +  ++P++  + +
Sbjct: 308 PQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTI 367

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  +C  GK++ A  L   + ++G+ P+  T++ ++ G    G  N A ELF  M   G
Sbjct: 368 LIQGMCNFGKLEAARELFSNLFVKGIQPDVVTYTVMISGLLKGGLSNEACELFRDMAVHG 427

Query: 389 C 389
           C
Sbjct: 428 C 428


>gi|242069919|ref|XP_002450236.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
 gi|241936079|gb|EES09224.1| hypothetical protein SORBIDRAFT_05g002360 [Sorghum bicolor]
          Length = 833

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/336 (37%), Positives = 186/336 (55%), Gaps = 20/336 (5%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
            LE+F+ +R +S       ++  ++A  +FD +L     P  +T+FN L   +++     
Sbjct: 116 QLERFIADRAQSG------SLASHDALKLFDLLLP-HARPASVTAFNHLLTAVSRASGRH 168

Query: 125 TVL------SLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           + L      SLF R+    S  + PD  TY+ILI CFC+MGR+ HGF V G IL++ +  
Sbjct: 169 STLESQLGISLFDRMVRECSDKVAPDRCTYSILIGCFCRMGRLEHGFAVFGLILKTGWRV 228

Query: 176 DAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           + + F  L+KGLC   R+ EA   L  ++  FGC PNV++Y+TL+ G C       AL L
Sbjct: 229 NHIVFNQLLKGLCDAKRLDEATNILLWRMPEFGCTPNVVSYNTLVKGFCNENRAEEALEL 288

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
              MA+  G   + C P+ V+Y T+I+G  +EG VDKA  LFLQM D+ I PDVVTYN++
Sbjct: 289 LHVMADDQG---LSCPPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTV 345

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G C A   + A  +  +M+D+GV+P   T+N ++      GK  E  RLLE M    +
Sbjct: 346 IDGLCKAQVVDRAKAVFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDL 405

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            P+   ++ L+D  C  GR   A+ +F S+   G K
Sbjct: 406 EPDCFIYALLLDYLCKNGRCTEARNIFDSVIRKGIK 441



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 152/308 (49%), Gaps = 27/308 (8%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + S+N +     +    D   +LF ++   G+ PD+ TYN +I+  CK   V     
Sbjct: 301 PPDVVSYNTVINGFFREGQVDKAYNLFLQMIDRGIPPDVVTYNTVIDGLCKAQVVDRAKA 360

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V  ++L     P    +  LI G  +  +  E   L  ++     +P+   Y+ L++ LC
Sbjct: 361 VFQQMLDKGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYALLLDYLC 420

Query: 224 RTGHTIVALNLFEEMANGNGKFGV-----VC----------KPNTVTYTTIIDGLCKEGF 268
           + G    A N+F+ +     K        VC           PN V Y  +ID LCK G 
Sbjct: 421 KNGRCTEARNIFDSVIRKGIKPDAMIDEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGR 480

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A   F QM ++            ++G C    W +A  L+ EM+DQG++ DVV FN 
Sbjct: 481 VDDAILKFNQMINE------------VYGLCTVEKWEKAEELVFEMLDQGIRLDVVVFNT 528

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +M +LC+ G++ EA RL+ELM+  GV P+  +++TL+DG CLTGR + A +L   M S+G
Sbjct: 529 LMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIG 588

Query: 389 CKHTVFSY 396
            K   F+Y
Sbjct: 589 LKPNEFTY 596



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/296 (29%), Positives = 148/296 (50%), Gaps = 29/296 (9%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF---------- 173
           D  + +F ++   GL P++  Y  LI+  CK+GRV    +   +++   +          
Sbjct: 447 DEAVCIFDKMRQQGLSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEK 506

Query: 174 -------------TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
                          D V F +L+  LC E R+MEA  L   +   G +P+VI+Y+TL++
Sbjct: 507 AEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVD 566

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C TG T  A  L + M +      +  KPN  TY T++ G CK   +D A  L  +M 
Sbjct: 567 GHCLTGRTDEAAKLLDVMVS------IGLKPNEFTYNTLLHGYCKARRIDDAYSLLREML 620

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                PDVVTYN+++HG      ++EA  L + M++   Q D+ T+N+I++ LCKN  +D
Sbjct: 621 MNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCVD 680

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA ++ + +  +G+  +  TF+ ++      G+   A +LF ++ + G    V +Y
Sbjct: 681 EAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETY 736



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 160/326 (49%), Gaps = 32/326 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  ML+ +   P   ++N L      T  +  V+ L + +++  L PD + Y +
Sbjct: 356 DRAKAVFQQMLD-KGVKPSNGTYNCLIHGYLSTGKWKEVVRLLEEMSTHDLEPDCFIYAL 414

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR +    +   ++R    PDA+              I EA  +F K++  G
Sbjct: 415 LLDYLCKNGRCTEARNIFDSVIRKGIKPDAM--------------IDEAVCIFDKMRQQG 460

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP---------------- 251
             PNV+ Y  LI+ LC+ G    A+  F +M N       V K                 
Sbjct: 461 LSPNVVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWEKAEELVFEMLDQGIR 520

Query: 252 -NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            + V + T++  LC+EG V +A+ L   M    + PDV++YN+L+ G C     +EA  L
Sbjct: 521 LDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKL 580

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L  M+  G++P+  T+N ++   CK  ++D+A  LL  M++ G  P+  T++T++ G   
Sbjct: 581 LDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQ 640

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
           TGR + AKEL+++M +   +  +++Y
Sbjct: 641 TGRFSEAKELYLNMINSRTQWDMYTY 666



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 152/324 (46%), Gaps = 30/324 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS------------ 135
           +EA CIFD M     SP  + ++  L   L K    D  +  F ++ +            
Sbjct: 447 DEAVCIFDKMRQQGLSPN-VVNYGALIDALCKLGRVDDAILKFNQMINEVYGLCTVEKWE 505

Query: 136 -----------TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
                       G+  D+  +N L+   C+ GRV     ++  +LR    PD +++ +L+
Sbjct: 506 KAEELVFEMLDQGIRLDVVVFNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLV 565

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            G C   R  EAA L   + + G KPN  TY+TL++G C+      A +L  EM   NG 
Sbjct: 566 DGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLM-NGP 624

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 P+ VTY TI+ GL + G   +AKEL+L M +     D+ TYN +++G C  N  
Sbjct: 625 -----TPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCKNNCV 679

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  +   +  +G+Q  ++TFN+++  L K GK ++A  L   +   G+ P+  T+  +
Sbjct: 680 DEAFKMFQSLCSKGLQLHIITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLI 739

Query: 365 MDGFCLTGRVNHAKELFVSMESMG 388
            +     G +     LF +ME  G
Sbjct: 740 AENLIKEGSLEELGVLFSAMEENG 763



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 127/268 (47%), Gaps = 6/268 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L   L +         L + +   G+ PD+ +YN L++  C  GR      +L  ++
Sbjct: 526 FNTLMCDLCREGRVMEAQRLIELMLRVGVRPDVISYNTLVDGHCLTGRTDEAAKLLDVMV 585

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+   + +L+ G C   RI +A +L  ++   G  P+V+TY+T+++GL +TG   
Sbjct: 586 SIGLKPNEFTYNTLLHGYCKARRIDDAYSLLREMLMNGPTPDVVTYNTILHGLFQTGRFS 645

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L+  M N   ++      +  TY  I++GLCK   VD+A ++F  +  K +   ++
Sbjct: 646 EAKELYLNMINSRTQW------DMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHII 699

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+N +I          +A  L   +   G+ PDV T+ +I + L K G ++E   L   M
Sbjct: 700 TFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAM 759

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
              G  PN+   + L+  F   G ++ A
Sbjct: 760 EENGTAPNSRMLNALVRRFLHRGDISRA 787



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 64/261 (24%), Positives = 113/261 (43%), Gaps = 6/261 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L      T   D    L   + S GL P+ +TYN L++ +CK  R+   + +
Sbjct: 556 PDVISYNTLVDGHCLTGRTDEAAKLLDVMVSIGLKPNEFTYNTLLHGYCKARRIDDAYSL 615

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L +  TPD V + +++ GL    R  EA  L+  +     + ++ TY+ ++NGLC+
Sbjct: 616 LREMLMNGPTPDVVTYNTILHGLFQTGRFSEAKELYLNMINSRTQWDMYTYNIILNGLCK 675

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +F+ + +   +  ++      T+  +I  L K G  + A +LF  +    +
Sbjct: 676 NNCVDEAFKMFQSLCSKGLQLHII------TFNIMIGALLKGGKKEDAMDLFATISAYGL 729

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY  +           E   L   M + G  P+    N ++      G +  A  
Sbjct: 730 VPDVETYCLIAENLIKEGSLEELGVLFSAMEENGTAPNSRMLNALVRRFLHRGDISRAGA 789

Query: 345 LLELMILRGVNPNTSTFSTLM 365
            L  +  +  +   ST S L+
Sbjct: 790 YLSKLDEKNFSLEASTASMLI 810



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 61/137 (44%), Gaps = 5/137 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  ++  M+N R +   + ++N++   L K    D    +F+ L S GL   + T+NI
Sbjct: 645 SEAKELYLNMINSR-TQWDMYTYNIILNGLCKNNCVDEAFKMFQSLCSKGLQLHIITFNI 703

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I    K G+      +   I      PD   +  + + L  E  + E   LF+ ++  G
Sbjct: 704 MIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFSAMEENG 763

Query: 208 CKPNVITYSTLINGLCR 224
             PN    S ++N L R
Sbjct: 764 TAPN----SRMLNALVR 776



 Score = 45.4 bits (106), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 58/131 (44%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + +FN++ G L K    +  + LF  +++ GL PD+ TY ++     K G +    V+  
Sbjct: 698 IITFNIMIGALLKGGKKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELGVLFS 757

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +  +   P++    +L++       I  A A  +KL          T S LI+   R  
Sbjct: 758 AMEENGTAPNSRMLNALVRRFLHRGDISRAGAYLSKLDEKNFSLEASTASMLISLYSRGE 817

Query: 227 HTIVALNLFEE 237
           +  +A +L E+
Sbjct: 818 YQQLAKSLPEK 828


>gi|356561705|ref|XP_003549120.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
           mitochondrial-like [Glycine max]
          Length = 445

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 173/312 (55%), Gaps = 10/312 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A   F+ ML MRP PPP   FN +   L K K Y TV+SLFK+    G+ PDL T +I
Sbjct: 40  HHAVASFNLMLLMRP-PPPTFLFNNILSSLVKNKRYPTVISLFKQFEPNGITPDLCTLSI 98

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC    ++  F V   IL+  F PDA+   +LIKGLC    I +      ++ A G
Sbjct: 99  LINCFCHQAHITLAFSVFANILKRGFHPDAITLNTLIKGLCFRGEIKKTLYFHDQVVAQG 158

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + ++Y TLINGLC+ G T     L  ++       G   KP+ V Y TII+ LCK  
Sbjct: 159 FQLDQVSYGTLINGLCKAGETKAVARLLRKLE------GHSVKPDVVMYNTIINSLCKNK 212

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +++ +M  K I+PDVVTY +LIHGFC      EA  LL EM  + + PDV TF+
Sbjct: 213 LLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFS 272

Query: 328 VIMDELCKNGK---MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           V++D L K GK   +DEA  L E M  + + P+  T+++L+DG C    +  A  L   M
Sbjct: 273 VLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDGLCKNHHLERAIALLKEM 332

Query: 385 ESMGCKHTVFSY 396
           +  G +  V+SY
Sbjct: 333 KEHGIQPDVYSY 344



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 138/284 (48%), Gaps = 9/284 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L K      V  L ++L    + PD+  YN +IN  CK   +     V   
Sbjct: 164 VSYGTLINGLCKAGETKAVARLLRKLEGHSVKPDVVMYNTIINSLCKNKLLGDACDVYSE 223

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++    +PD V +T+LI G C   ++ EA +L  ++K     P+V T+S LI+ L + G 
Sbjct: 224 MIVKGISPDVVTYTTLIHGFCIMGKMKEAFSLLNEMKLKNINPDVYTFSVLIDALGKEGK 283

Query: 228 TIV---ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A++LFEEM + N        P+ VTY ++IDGLCK   +++A  L  +MK+  I
Sbjct: 284 KKMVDEAMSLFEEMKHKN------MIPDIVTYNSLIDGLCKNHHLERAIALLKEMKEHGI 337

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV +Y  L+ G C       A      ++ +G   +V  +NV+++ LCK G   EA  
Sbjct: 338 QPDVYSYTILLDGLCKGGRLEIAKEFFQHLLVKGCHLNVWPYNVMINGLCKAGLFGEAMD 397

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M  +G  PN  TF T++         + A+++   M + G
Sbjct: 398 LKSKMEGKGCMPNAITFRTIICALSEKDENDKAEKILREMIARG 441



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/253 (32%), Positives = 136/253 (53%), Gaps = 9/253 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K K       ++  +   G+ PD+ TY  LI+ FC MG++   F +
Sbjct: 196 PDVVMYNTIINSLCKNKLLGDACDVYSEMIVKGISPDVVTYTTLIHGFCIMGKMKEAFSL 255

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESR---IMEAAALFTKLKAFGCKPNVITYSTLING 221
           L  +      PD   F+ LI  L  E +   + EA +LF ++K     P+++TY++LI+G
Sbjct: 256 LNEMKLKNINPDVYTFSVLIDALGKEGKKKMVDEAMSLFEEMKHKNMIPDIVTYNSLIDG 315

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+  H   A+ L +EM     + G+  +P+  +YT ++DGLCK G ++ AKE F  +  
Sbjct: 316 LCKNHHLERAIALLKEMK----EHGI--QPDVYSYTILLDGLCKGGRLEIAKEFFQHLLV 369

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K  + +V  YN +I+G C A  + EA  L  +M  +G  P+ +TF  I+  L +  + D+
Sbjct: 370 KGCHLNVWPYNVMINGLCKAGLFGEAMDLKSKMEGKGCMPNAITFRTIICALSEKDENDK 429

Query: 342 ASRLLELMILRGV 354
           A ++L  MI RG+
Sbjct: 430 AEKILREMIARGL 442


>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 595

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 115/307 (37%), Positives = 169/307 (55%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A   +  M+ M+P P  +  FNLLFG +AK KHY T +SL K ++  G+ P++ T+NI+I
Sbjct: 62  ALDFYHKMVTMKPFPC-VKDFNLLFGIVAKMKHYTTAISLIKHMSYIGVKPNVPTHNIVI 120

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           NC C++     GF VLG + +    P  V FT+++ GLC E  + +A      LK  G +
Sbjct: 121 NCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIRFVDHLKDMGYE 180

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            +  T   +INGLC+ GH+  AL+  ++M   N      C  +   Y  ++DGLCK+G V
Sbjct: 181 SDRYTRGAIINGLCKVGHSSAALSYLKKMEEQN------CNLDVTAYNAVVDGLCKDGMV 234

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A +LF QM  K I PD+ TYN LIHG C  + W EA  LL  MM +G+ PDV TFNVI
Sbjct: 235 FEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 294

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
                K G +  A  +   M   G+  +  T+S+++   C+  ++  A E+F  M   GC
Sbjct: 295 GGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGC 354

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 355 LPNIVTY 361



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ +F  M   +   P L ++N L   L     +     L   +   G+ PD+ T+N++
Sbjct: 236 EAWDLFSQMTG-KGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 294

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              F K G +S    +   +       D V ++S+I   C  +++ +A  +F  +   GC
Sbjct: 295 GGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGC 354

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY++LI+G C   +   A+    EM N NG       PN VT+ T+I G CK G 
Sbjct: 355 LPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVN-NG-----LDPNIVTWNTLIGGFCKAGK 408

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKELF  M      PD+ T   ++ G    +  +EA  L  E+       D++ +++
Sbjct: 409 PVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNSDLDIIIYSI 468

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I++ +C +GK+++A  L   +  +GV  +  T++ +++G C  G ++ A++L + ME  G
Sbjct: 469 ILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAEDLLMKMEENG 528

Query: 389 C 389
           C
Sbjct: 529 C 529



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +T++N +   L K         LF ++   G+ PDL+TYN LI+  C   R      +L 
Sbjct: 218 VTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLA 277

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++R    PD   F  +         I  A ++F+ +   G + +V+TYS++I   C   
Sbjct: 278 NMMRKGIMPDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLN 337

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F+ M          C PN VTYT++I G C+   ++KA     +M +  ++P
Sbjct: 338 QMKDAMEVFDLMIRKG------CLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDP 391

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           ++VT+N+LI GFC A     A  L   M   G  PD+ T  +I+D L K     EA  L 
Sbjct: 392 NIVTWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLF 451

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +     + +   +S +++G C +G++N A ELF  + S G K  V +Y
Sbjct: 452 RELEKMNSDLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTY 501



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN++ G   KT       S+F  +   G+  D+ TY+ +I   C + ++     V
Sbjct: 286 PDVQTFNVIGGRFLKTGMISRAKSIFSFMGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEV 345

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    P+ V +TSLI G C    + +A     ++   G  PN++T++TLI G C+
Sbjct: 346 FDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCK 405

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  LF  M + +G+      P+  T   I+DGL K  F  +A  LF +++  N 
Sbjct: 406 AGKPVAAKELFFVM-HKHGQL-----PDLQTCAIILDGLFKCHFHSEAMSLFRELEKMNS 459

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + D++ Y+ +++G C +   N+A  L   +  +GV+ DVVT+N++++ LCK G +D+A  
Sbjct: 460 DLDIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGLCKEGLLDDAED 519

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL  M   G  P+  T++  + G      ++ + +  + M+  G
Sbjct: 520 LLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKG 563



 Score = 52.4 bits (124), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 60/129 (46%)

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +D L     VD A + + +M      P V  +N L         +  A  L+  M   GV
Sbjct: 50  LDSLRNVKSVDVALDFYHKMVTMKPFPCVKDFNLLFGIVAKMKHYTTAISLIKHMSYIGV 109

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P+V T N++++ LC+         +L LM   GV P+  TF+T+++G C+ G V  A  
Sbjct: 110 KPNVPTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEPSIVTFTTIVNGLCVEGNVAQAIR 169

Query: 380 LFVSMESMG 388
               ++ MG
Sbjct: 170 FVDHLKDMG 178


>gi|358347566|ref|XP_003637827.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503762|gb|AES84965.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 639

 Score =  223 bits (568), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 182/309 (58%), Gaps = 5/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+++L+M    PP+  FN +   L K  H+   +S  +++   G+ P+++T+NI
Sbjct: 34  DDAVSSFNHILHMNNHTPPIFEFNKILSSLVKMNHFKIAISFSQQMELKGIQPEMFTFNI 93

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCF  + +++  F ++ +IL+  + PD V   +L++GLC   ++ EA      +    
Sbjct: 94  LINCFSHLCQLNFAFSMVAKILKLGYQPDTVTVNTLLRGLCLNGKVKEALNFHDHVIRKR 153

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + ++Y TLINGLC++G T  AL L  ++        ++ +P+ + YT IID  CK+ 
Sbjct: 154 FHLDQVSYGTLINGLCKSGETRAALQLLRKIEGL-----LLVRPDVIMYTAIIDSFCKDK 208

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A +L+ +M  K I P+VVT+NSLI+GFC      EA  LL EM    V P+V TFN
Sbjct: 209 LVIDAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVGQLKEAVGLLNEMSLNNVNPNVYTFN 268

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++ +A+ +L +MI +GV PN  T+++LMDG+ L   VN AK +F ++   
Sbjct: 269 ILIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLR 328

Query: 388 GCKHTVFSY 396
           G    V SY
Sbjct: 329 GVTPNVHSY 337



 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 170/309 (55%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A+ ++  M+  +  P  +T  +L++G C+         + L   ++   + P++YT+NI
Sbjct: 212 DAYDLYSEMIVKKIYPNVVTFNSLIYGFCIVG--QLKEAVGLLNEMSLNNVNPNVYTFNI 269

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V     VL  +++    P+ V +TSL+ G      + +A  +F  +   G
Sbjct: 270 LIDGLCKEGEVKKATSVLSVMIKQGVEPNVVTYTSLMDGYFLVKEVNKAKHVFNTISLRG 329

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV +YS +INGLC+      A+ LF+EM   N        PNTVTY+++IDGLCK G
Sbjct: 330 VTPNVHSYSVMINGLCKNKMVDEAVKLFKEMHLKN------MTPNTVTYSSLIDGLCKSG 383

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +    +L  ++ ++    +++TYNSL++G C  +  ++A  LL +M D+G+QPD+ T+ 
Sbjct: 384 RISDVWDLIDEINNRGQPANIITYNSLLNGLCKNHQVDKAIALLTKMKDEGIQPDMSTYT 443

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCKNG++ +A R+ + ++ +G   N   ++ +++G C  G  + A  L   ME  
Sbjct: 444 TLVDGLCKNGRLKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDN 503

Query: 388 GCKHTVFSY 396
           GC     +Y
Sbjct: 504 GCMPDAVTY 512



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 79/264 (29%), Positives = 134/264 (50%), Gaps = 7/264 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +   M+     P  +T  +L+ G     K  +    +F  ++  G+ P++++Y+++
Sbjct: 282 KATSVLSVMIKQGVEPNVVTYTSLMDGYFL-VKEVNKAKHVFNTISLRGVTPNVHSYSVM 340

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK   V     +   +     TP+ V ++SLI GLC   RI +   L  ++   G 
Sbjct: 341 INGLCKNKMVDEAVKLFKEMHLKNMTPNTVTYSSLIDGLCKSGRISDVWDLIDEINNRGQ 400

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N+ITY++L+NGLC+      A+ L  +M +         +P+  TYTT++DGLCK G 
Sbjct: 401 PANIITYNSLLNGLCKNHQVDKAIALLTKMKDEG------IQPDMSTYTTLVDGLCKNGR 454

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+ ++  +  K    ++  Y  +I+G C    ++EA  LL +M D G  PD VT+  
Sbjct: 455 LKDAQRIYQDLLCKGYPLNIRMYTVMINGLCKEGFFDEALSLLSQMEDNGCMPDAVTYET 514

Query: 329 IMDELCKNGKMDEASRLLELMILR 352
           ++  L KN K  +A +LL  MI R
Sbjct: 515 LISALFKNNKNGKAVKLLREMIAR 538


>gi|357460281|ref|XP_003600422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355489470|gb|AES70673.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 512

 Score =  223 bits (567), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 114/303 (37%), Positives = 176/303 (58%), Gaps = 6/303 (1%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+++L+ +   P +  F  + G L K  HY  V+SL +++   G+  +L T +ILINCF 
Sbjct: 56  FNHLLHQKNPTPSIIQFGKILGSLVKANHYSIVVSLHRQMEFNGIASNLVTLSILINCFS 115

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           ++G  S  F V   IL+  + PDA+  T+LIKGLC +  I +A     K+ A G + N +
Sbjct: 116 QLGHNSLSFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV 175

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TLINGLC+ G T  AL +   +       G + + + V Y TIIDG+CK+  V+ A 
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRID------GKLVRLDVVMYNTIIDGVCKDKLVNDAF 229

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           + + +M  K I P VVTYN+LI G C      +A  LL +M+ + + P V TF++++D  
Sbjct: 230 DFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSILVDAF 289

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK GK+ EA  +  +M+ + V PN  T+++LM+G+CL   VN A+ +F +M  +G    V
Sbjct: 290 CKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDV 349

Query: 394 FSY 396
            SY
Sbjct: 350 HSY 352



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 161/290 (55%), Gaps = 13/290 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF  +  M+  R  P  +T +N L   L         + L  ++    + P +YT++I
Sbjct: 226 NDAFDFYSEMVAKRICPTVVT-YNTLICGLCIMGQLKDAIGLLHKMILENINPTVYTFSI 284

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G+V     V   +++    P+ V + SL+ G C  + + +A ++F  +   G
Sbjct: 285 LVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIG 344

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLC 264
             P+V +YS +I+G C+      A+ LFEEM          CK   P+ VTY ++IDGLC
Sbjct: 345 VAPDVHSYSIMISGFCKIKMVDEAMKLFEEMH---------CKQIFPDVVTYNSLIDGLC 395

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G +  A +L  +M D+   P+++TYNSL+   C  +  ++A  LL ++ D  +QP V 
Sbjct: 396 KSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHNIQPSVC 455

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           T+N++++ LCK+G++ +A ++ E +++ G N +  T++T++ GFC  G V
Sbjct: 456 TYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFV 505



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 100/313 (31%), Positives = 166/313 (53%), Gaps = 19/313 (6%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKH-----YDTVLSLFKRLNSTGLFPDLY 143
           +F +F  +L     P  +T   L+ G CL    H     +D VL+L  +LN         
Sbjct: 123 SFSVFSNILKKGYEPDAITLTTLIKGLCLKGDIHKALHFHDKVLALGFQLNQV------- 175

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           +Y  LIN  CK+G+      +L RI       D V + ++I G+C +  + +A   ++++
Sbjct: 176 SYRTLINGLCKVGQTKAALEMLRRIDGKLVRLDVVMYNTIIDGVCKDKLVNDAFDFYSEM 235

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            A    P V+TY+TLI GLC  G    A+ L  +M   N        P   T++ ++D  
Sbjct: 236 VAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMILEN------INPTVYTFSILVDAF 289

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CKEG V +AK +F+ M  K++ P++VTYNSL++G+C  N+ N+A  +   M   GV PDV
Sbjct: 290 CKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVNKAESIFNTMAQIGVAPDV 349

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            ++++++   CK   +DEA +L E M  + + P+  T+++L+DG C +GR+++A +L   
Sbjct: 350 HSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNSLIDGLCKSGRISYALKLIGE 409

Query: 384 MESMGCKHTVFSY 396
           M   G    + +Y
Sbjct: 410 MHDRGQPPNIITY 422



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 155/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   + K K  +     +  + +  + P + TYN LI   C MG++     +L +++
Sbjct: 212 YNTIIDGVCKDKLVNDAFDFYSEMVAKRICPTVVTYNTLICGLCIMGQLKDAIGLLHKMI 271

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P    F+ L+   C E ++ EA  +F  +     KPN++TY++L+NG C      
Sbjct: 272 LENINPTVYTFSILVDAFCKEGKVKEAKNVFVVMMKKDVKPNIVTYNSLMNGYCLVNEVN 331

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++F  MA    + GV   P+  +Y+ +I G CK   VD+A +LF +M  K I PDVV
Sbjct: 332 KAESIFNTMA----QIGVA--PDVHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVV 385

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI G C +   + A  L+ EM D+G  P+++T+N ++D LCKN  +D+A  LL  +
Sbjct: 386 TYNSLIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKL 445

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+  T++ L++G C +GR+  A+++F  +   G    V++Y
Sbjct: 446 KDHNIQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTY 492



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 36/177 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF+ M  +  +P  + S++++     K K  D  + LF+ ++   +FPD+ TYN 
Sbjct: 331 NKAESIFNTMAQIGVAPD-VHSYSIMISGFCKIKMVDEAMKLFEEMHCKQIFPDVVTYNS 389

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK GR+S+   ++G +      P+ + + SL+  LC    + +A  L TKLK   
Sbjct: 390 LIDGLCKSGRISYALKLIGEMHDRGQPPNIITYNSLLDALCKNHHVDKAIELLTKLKDHN 449

Query: 208 CKP-----------------------------------NVITYSTLINGLCRTGHTI 229
            +P                                   +V TY+T+I G C+ G  I
Sbjct: 450 IQPSVCTYNILINGLCKSGRLKDAQKVFEDVLVNGYNIDVYTYNTMIKGFCKKGFVI 506


>gi|15221691|ref|NP_176501.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169915|sp|Q9CAN0.1|PPR99_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63130, mitochondrial; Flags: Precursor
 gi|12323261|gb|AAG51613.1|AC010795_17 unknown protein; 64081-65973 [Arabidopsis thaliana]
 gi|22136016|gb|AAM91590.1| unknown protein [Arabidopsis thaliana]
 gi|23197834|gb|AAN15444.1| unknown protein [Arabidopsis thaliana]
 gi|332195938|gb|AEE34059.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 119/344 (34%), Positives = 190/344 (55%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL +++ + G+  +LYTY+I
Sbjct: 63  DDAVNLFGDMVKSRPFPS-IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 121

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM------------- 194
           LINCFC+  ++S    VL ++++  + PD V   SL+ G C  +RI              
Sbjct: 122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query: 195 ----------------------EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                 EA AL  ++   GC+P+++TY  ++NGLC+ G   +AL
Sbjct: 182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L ++M  G        +P  V Y TIID LC    V+ A  LF +M +K I P+VVTYN
Sbjct: 242 SLLKKMEQGK------IEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYN 295

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI   C    W++A+ LL +M+++ + P+VVTF+ ++D   K GK+ EA +L + MI R
Sbjct: 296 SLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKR 355

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++P+  T+S+L++GFC+  R++ AK +F  M S  C   V +Y
Sbjct: 356 SIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTY 399



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 161/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L   K+ +  L+LF  +++ G+ P++ TYN LI C C  GR S    +
Sbjct: 254 PGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRL 313

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+ V F++LI     E +++EA  L+ ++      P++ TYS+LING C 
Sbjct: 314 LSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCM 373

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++FE M + +      C PN VTY T+I G CK   VD+  ELF +M  + +
Sbjct: 374 HDRLDEAKHMFELMISKD------CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGL 427

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             + VTY +LIHGF  A + + A  +  +M+  GV PD++T+++++D LC NGK++ A  
Sbjct: 428 VGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALV 487

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + E +    + P+  T++ +++G C  G+V    +LF S+   G K  V +Y
Sbjct: 488 VFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTY 539



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +F  M N +   P + ++N L  CL     +     L   +    + P++ T++ 
Sbjct: 273 NDALNLFTEMDN-KGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSA 331

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G++     +   +++    PD   ++SLI G C   R+ EA  +F  + +  
Sbjct: 332 LIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKD 391

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+TLI G C+       + LF EM+   G  G     NTVTYTT+I G  +  
Sbjct: 392 CFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQ-RGLVG-----NTVTYTTLIHGFFQAR 445

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+ +F QM    + PD++TY+ L+ G C       A  +   +    ++PD+ T+N
Sbjct: 446 ECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYN 505

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +CK GK+++   L   + L+GV PN  T++T+M GFC  G    A  LF  M+  
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEE 565

Query: 388 G 388
           G
Sbjct: 566 G 566



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/255 (28%), Positives = 131/255 (51%), Gaps = 8/255 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M++ +   P + ++N L     K K  D  + LF+ ++  GL  +  TY  
Sbjct: 378 DEAKHMFELMIS-KDCFPNVVTYNTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTYTT 436

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F +     +  +V  +++     PD + ++ L+ GLC   ++  A  +F  L+   
Sbjct: 437 LIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSK 496

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P++ TY+ +I G+C+ G      +LF  ++      GV  KPN VTYTT++ G C++G
Sbjct: 497 MEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLK----GV--KPNVVTYTTMMSGFCRKG 550

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A  LF +MK++   PD  TYN+LI       D   +  L+ EM       D  T  
Sbjct: 551 LKEEADALFREMKEEGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRSCRFVGDASTIG 610

Query: 328 VIMDELCKNGKMDEA 342
           ++ + L  +G++D++
Sbjct: 611 LVTNML-HDGRLDKS 624



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 108/205 (52%), Gaps = 6/205 (2%)

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++ +A  LF  +      P+++ +S L++ + +     + ++L E+M N     G+    
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQN----LGI--SH 114

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  TY+ +I+  C+   +  A  +  +M      PD+VT NSL++GFC+ N  ++A  L+
Sbjct: 115 NLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLV 174

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M++ G QPD  TFN ++  L ++ +  EA  L++ M+++G  P+  T+  +++G C  
Sbjct: 175 GQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKR 234

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G ++ A  L   ME    +  V  Y
Sbjct: 235 GDIDLALSLLKKMEQGKIEPGVVIY 259


>gi|22128591|gb|AAM52341.1| fertility restorer-like protein [Petunia x hybrida]
          Length = 592

 Score =  221 bits (563), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 182/310 (58%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +F  M+  +P P  + SF+ L   L   KHY +V+SLF+ ++   +    +  +I
Sbjct: 54  DDAFSLFRQMVRTKPLPS-VVSFSKLLKALVHMKHYSSVVSLFREIHKLRIPVHEFILSI 112

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           ++N  C M R   GF VL    +     + V F +L++GL AE+++ +A  LF KL +  
Sbjct: 113 VVNSCCLMHRTDLGFSVLAIHFKKGIPFNQVIFNTLLRGLFAENKVKDAVHLFKKLVREN 172

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C+PN + Y T++NGLC+ GHT  A +L   M  G+       KPNT  Y+ +ID  CK+
Sbjct: 173 ICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGS------TKPNTCIYSIVIDAFCKD 226

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A  L  +MK K+I PD+ TY++LI   C  + W     L +EM+   + P+V TF
Sbjct: 227 GMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNIYPNVCTF 286

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D LCK GK+++A  ++  MI +GV+P+  T++ ++DG+ L G+V+ A+E+F SM +
Sbjct: 287 NSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREIFDSMIN 346

Query: 387 MGCKHTVFSY 396
              +  + SY
Sbjct: 347 KSIEPNIISY 356



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 145/278 (52%), Gaps = 8/278 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           LL G  A+ K  D V  LFK+L    +  P+   Y  ++N  CK G     F +L  + +
Sbjct: 148 LLRGLFAENKVKDAV-HLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQ 206

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+   ++ +I   C +  +  A +L  ++K     P++ TYSTLI+ LC+      
Sbjct: 207 GSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWEN 266

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
              LF EM + N        PN  T+ ++IDGLCKEG V+ A+E+   M +K ++PDV+T
Sbjct: 267 VRTLFLEMIHLN------IYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVIT 320

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN +I G+      + A  +   M+++ ++P+++++N++++   +  K+DEA ++   + 
Sbjct: 321 YNMIIDGYGLRGQVDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREIS 380

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +G+ P+  T + L+ G    GR   A+  F  M S G
Sbjct: 381 QKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAG 418



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/328 (24%), Positives = 149/328 (45%), Gaps = 41/328 (12%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++    + P    ++++     K    D   SL   +    + PD++TY+ LI+  CK+ 
Sbjct: 203 LMEQGSTKPNTCIYSIVIDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLS 262

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +  +   +   ++     P+   F S+I GLC E ++ +A  +   +   G  P+VITY+
Sbjct: 263 QWENVRTLFLEMIHLNIYPNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYN 322

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            +I+G    G    A  +F+ M N +       +PN ++Y  +I+G  ++  +D+A ++ 
Sbjct: 323 MIIDGYGLRGQVDRAREIFDSMINKS------IEPNIISYNILINGYARQKKIDEAMQVC 376

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT----------- 325
            ++  K + P +VT N L+HG         A     EM+  G  PD+ T           
Sbjct: 377 REISQKGLKPSIVTCNVLLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKN 436

Query: 326 ------------------------FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
                                   +  ++D LCKNGK+D+A    E + L G++P+  T+
Sbjct: 437 GLVEEAMSHFHKLERRREDTNIQIYTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITY 496

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGC 389
           + ++ G+C  G ++ AK++   ME  GC
Sbjct: 497 TAMISGYCQEGLLDEAKDMLRKMEDNGC 524



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 145/297 (48%), Gaps = 6/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  ++      P    +  +   L K  H      L + +      P+   Y+I+
Sbjct: 160 DAVHLFKKLVRENICEPNEVMYGTVMNGLCKKGHTQKAFDLLRLMEQGSTKPNTCIYSIV 219

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G +     +L  + +    PD   +++LI  LC  S+      LF ++     
Sbjct: 220 IDAFCKDGMLDGATSLLNEMKQKSIPPDIFTYSTLIDALCKLSQWENVRTLFLEMIHLNI 279

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV T++++I+GLC+ G    A    EE+     + GV   P+ +TY  IIDG    G 
Sbjct: 280 YPNVCTFNSVIDGLCKEGKVEDA----EEIMRYMIEKGV--DPDVITYNMIIDGYGLRGQ 333

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A+E+F  M +K+I P++++YN LI+G+      +EA  +  E+  +G++P +VT NV
Sbjct: 334 VDRAREIFDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++  L + G+   A    + M+  G  P+  T  TL+ G+   G V  A   F  +E
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLE 450



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 138/291 (47%), Gaps = 29/291 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L K    +    + + +   G+ PD+ TYN++I+ +   G+V     +
Sbjct: 281 PNVCTFNSVIDGLCKEGKVEDAEEIMRYMIEKGVDPDVITYNMIIDGYGLRGQVDRAREI 340

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P+ +++  LI G   + +I EA  +  ++   G KP+++T + L++GL  
Sbjct: 341 FDSMINKSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNVLLHGLFE 400

Query: 225 TGHTIVALNLFEEMAN---------------GNGKFGVVCKP--------------NTVT 255
            G T  A N F+EM +               G  K G+V +               N   
Sbjct: 401 LGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRREDTNIQI 460

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YT +IDGLCK G +DKA   F ++    ++PDV+TY ++I G+C     +EA  +L +M 
Sbjct: 461 YTAVIDGLCKNGKLDKAHATFEKLPLIGLHPDVITYTAMISGYCQEGLLDEAKDMLRKME 520

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           D G   D  T+NVI+    ++ K+ E    LE +  +  +   +T   LMD
Sbjct: 521 DNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVELLMD 571



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 68/249 (27%), Positives = 123/249 (49%), Gaps = 7/249 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  IFD M+N +   P + S+N+L    A+ K  D  + + + ++  GL P + T N+
Sbjct: 335 DRAREIFDSMIN-KSIEPNIISYNILINGYARQKKIDEAMQVCREISQKGLKPSIVTCNV 393

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   ++GR          +L +   PD     +L+ G      + EA + F KL+   
Sbjct: 394 LLHGLFELGRTKSAQNFFDEMLSAGHIPDLYTHCTLLGGYFKNGLVEEAMSHFHKLERRR 453

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N+  Y+ +I+GLC+ G    A   FE++        +   P+ +TYT +I G C+EG
Sbjct: 454 EDTNIQIYTAVIDGLCKNGKLDKAHATFEKLP------LIGLHPDVITYTAMISGYCQEG 507

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+AK++  +M+D     D  TYN ++ GF  +N  +E    L E+  +    +  T  
Sbjct: 508 LLDEAKDMLRKMEDNGCLADNRTYNVIVRGFLRSNKVSEMKAFLEEIAGKSFSFEAATVE 567

Query: 328 VIMDELCKN 336
           ++MD + ++
Sbjct: 568 LLMDIIAED 576


>gi|356566887|ref|XP_003551657.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Glycine max]
          Length = 525

 Score =  221 bits (562), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 130/313 (41%), Positives = 179/313 (57%), Gaps = 9/313 (2%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYT 144
           T ++A   F  ML++ P PP + S N L   + KTKHY TV+SL   L+S G   P L T
Sbjct: 35  TFDDAVSTFHRMLHLHP-PPSIVSLNKLLSSIMKTKHYPTVVSLCSHLDSKGTPKPSLVT 93

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            +I IN    +G++   F V+ +I++  F  D    T+L+KGLC + R  EA  L+    
Sbjct: 94  LSIFINSLTHLGQMGLAFSVMAKIVKRGFGVDPFTLTTLMKGLCLKGRTFEALNLYDHAV 153

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           + G   + + Y TLINGLC+ G T  A+ L  +M  G        +PN + Y  ++DGLC
Sbjct: 154 SKGFSFDEVCYGTLINGLCKMGKTRDAIELLRKMEKGG------VRPNLIMYNMVVDGLC 207

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDV 323
           KEG V +A  L  +M  K I  DV TYNSLIHGFC A  +  A  LL EM M + V+PDV
Sbjct: 208 KEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRLLNEMVMKEDVRPDV 267

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            TFN+++D LCK G + EA  +  LMI RG+ P+  + + LM+G+CL G ++ AKE+F  
Sbjct: 268 YTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEVFDR 327

Query: 384 MESMGCKHTVFSY 396
           M   G    V SY
Sbjct: 328 MVERGKLPNVISY 340



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 153/297 (51%), Gaps = 15/297 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N++   L K         L   +   G+  D++TYN LI+ FC  G+      +
Sbjct: 194 PNLIMYNMVVDGLCKEGLVTEACGLCSEMVGKGICIDVFTYNSLIHGFCGAGQFQGAVRL 253

Query: 165 LGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L   +++    PD   F  L+  LC    + EA  +F  +   G +P+V++ + L+NG C
Sbjct: 254 LNEMVMKEDVRPDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWC 313

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  +F+ M    GK      PN ++Y+T+I+G CK   VD+A  L  +M  +N
Sbjct: 314 LRGCMSEAKEVFDRMVE-RGKL-----PNVISYSTLINGYCKVKMVDEALRLLTEMHQRN 367

Query: 284 INPDVVTYNSLIHGFCYAN----DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           + PD VTYN L+ G   +     +W+    L+  M   G  PD++T+NV++D+  K   +
Sbjct: 368 LVPDTVTYNCLLDGLSKSGRVLYEWD----LVEAMRASGQAPDLITYNVLLDDYLKRECL 423

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D+A  L + ++  G++PN  T++ L+DG C  GR+  AKE+F  +   GC+  + +Y
Sbjct: 424 DKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTY 480



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/229 (34%), Positives = 129/229 (56%), Gaps = 6/229 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+YT+NIL++  CK+G V+    V G +++    PD V+  +L+ G C    + EA  +
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++   G  PNVI+YSTLING C+      AL L  EM   N        P+TVTY  +
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRN------LVPDTVTYNCL 378

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +DGL K G V    +L   M+     PD++TYN L+  +      ++A  L   ++D G+
Sbjct: 379 LDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTGI 438

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            P++ T+N+++D LCK G+M  A  + +L+ ++G  PN  T++ +++G 
Sbjct: 439 SPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGL 487



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/262 (30%), Positives = 135/262 (51%), Gaps = 8/262 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L K        ++F  +   GL PD+ + N L+N +C  G +S    V
Sbjct: 265 PDVYTFNILVDALCKLGMVAEARNVFGLMIKRGLEPDVVSCNALMNGWCLRGCMSEAKEV 324

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++     P+ +++++LI G C    + EA  L T++      P+ +TY+ L++GL +
Sbjct: 325 FDRMVERGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSK 384

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +G  +   +L E M A+G         P+ +TY  ++D   K   +DKA  LF  + D  
Sbjct: 385 SGRVLYEWDLVEAMRASGQA-------PDLITYNVLLDDYLKRECLDKALALFQHIVDTG 437

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I+P++ TYN LI G C       A  +   +  +G +P++ T+N++++ L + G +DEA 
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAE 497

Query: 344 RLLELMILRGVNPNTSTFSTLM 365
            LL  M+  G  PN  TF  L+
Sbjct: 498 ALLLEMVDDGFPPNAVTFDPLV 519



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 78/251 (31%), Positives = 125/251 (49%), Gaps = 19/251 (7%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLF------GCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           EA  +F  M+  R   P + S N L       GC+++ K       +F R+   G  P++
Sbjct: 285 EARNVFGLMIK-RGLEPDVVSCNALMNGWCLRGCMSEAKE------VFDRMVERGKLPNV 337

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            +Y+ LIN +CK+  V     +L  + +    PD V +  L+ GL    R++    L   
Sbjct: 338 ISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEA 397

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           ++A G  P++ITY+ L++   +      AL LF+ + +          PN  TY  +IDG
Sbjct: 398 MRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTG------ISPNIRTYNILIDG 451

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G +  AKE+F  +  K   P++ TYN +I+G       +EA  LL+EM+D G  P+
Sbjct: 452 LCKGGRMKAAKEIFQLLSVKGCRPNIRTYNIMINGLRREGLLDEAEALLLEMVDDGFPPN 511

Query: 323 VVTFNVIMDEL 333
            VTF+ ++  L
Sbjct: 512 AVTFDPLVRAL 522



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 107/211 (50%), Gaps = 7/211 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+  R   P + S++ L     K K  D  L L   ++   L PD  TYN 
Sbjct: 319 SEAKEVFDRMVE-RGKLPNVISYSTLINGYCKVKMVDEALRLLTEMHQRNLVPDTVTYNC 377

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K GRV + + ++  +  S   PD + +  L+        + +A ALF  +   G
Sbjct: 378 LLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKRECLDKALALFQHIVDTG 437

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ TY+ LI+GLC+ G    A  +F+ ++         C+PN  TY  +I+GL +EG
Sbjct: 438 ISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKG------CRPNIRTYNIMINGLRREG 491

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            +D+A+ L L+M D    P+ VT++ L+   
Sbjct: 492 LLDEAEALLLEMVDDGFPPNAVTFDPLVRAL 522



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 6/169 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R   P   ++N L   L+K+        L + + ++G  PDL TYN+L++ + K   
Sbjct: 363 MHQRNLVPDTVTYNCLLDGLSKSGRVLYEWDLVEAMRASGQAPDLITYNVLLDDYLKREC 422

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +   I+ +  +P+   +  LI GLC   R+  A  +F  L   GC+PN+ TY+ 
Sbjct: 423 LDKALALFQHIVDTGISPNIRTYNILIDGLCKGGRMKAAKEIFQLLSVKGCRPNIRTYNI 482

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           +INGL R G    A  L  EM +          PN VT+  ++  L ++
Sbjct: 483 MINGLRREGLLDEAEALLLEMVDDG------FPPNAVTFDPLVRALLEK 525


>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 550

 Score =  220 bits (561), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 124/362 (34%), Positives = 199/362 (54%), Gaps = 45/362 (12%)

Query: 70  LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
           L+ER   +   DI     ++A  +F  M+  RP P  +  FN L   + K K YD V+SL
Sbjct: 52  LRERLSKTRLRDIKL---HDAINLFREMVKTRPFPS-IVDFNRLLSAIVKMKKYDVVISL 107

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            K++   G+  DLYT+NI+INCFC   +VS    VLG++L+  + PD V   SL+ G C 
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
            +R+ +A +L  K+   G +P+++ Y+ +I+ LC+T     AL+ F+E+    G+ G+  
Sbjct: 168 RNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEI----GRKGI-- 221

Query: 250 KPNTVTYTTIIDGLC-----------------------------------KEGFVDKAKE 274
           +PN VTYT +++GLC                                   K G V +AKE
Sbjct: 222 RPNVVTYTALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKE 281

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F +M   +I+PD+VTY+SLI+G C  +  +EAN +   M+ +G  PDVV++N +++  C
Sbjct: 282 IFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFC 341

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K  ++++  +L   M  RG+  NT T++TL+ GF   G V+ A+E F  M+S G    ++
Sbjct: 342 KAKRVEDGMKLFRKMSQRGLVNNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIW 401

Query: 395 SY 396
           +Y
Sbjct: 402 TY 403



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/336 (30%), Positives = 167/336 (49%), Gaps = 42/336 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+ +    P + ++N +   L KT+  +  L  FK +   G+ P++ TY  
Sbjct: 172 SDAVSLVDKMVEI-GYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTA 230

Query: 148 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 172
           L+N  C  GR +                           FV  G++L          R  
Sbjct: 231 LVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGKVLEAKEIFEEMVRMS 290

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD V ++SLI GLC   RI EA  +F  + + GC P+V++Y+TLING C+       +
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGM 350

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF +M+    + G+V   NTVTY T+I G  + G VDKA+E F QM    ++PD+ TYN
Sbjct: 351 KLFRKMS----QRGLV--NNTVTYNTLIQGFFQVGDVDKAQEFFSQMDSFGVSPDIWTYN 404

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            L+ G C      +A  +  +M    +  D+VT+  ++  +CK GK+++A  L   + L+
Sbjct: 405 ILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTGKVEDAWGLFCSLSLK 464

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G+ P+  T++T+M G C  G  +  + L+  M+  G
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLQHEVEALYTKMKQEG 500


>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 600

 Score =  220 bits (560), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 170/313 (54%), Gaps = 7/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A + + A   +  M+ M+P P  +  FNLLF  +AK KHY T +SL K ++  G+ P ++
Sbjct: 61  AKSVDVALDFYHKMVTMKPFPC-VKDFNLLFSIVAKMKHYTTAISLIKHMSYIGVKPTVH 119

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T NI+INC C++     GF VLG + +    P  V F +++ GLC E  + +A      L
Sbjct: 120 TLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHL 179

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           K  G + +  T   + NGLC+ GH+  AL+  ++M   N      C  +   Y+ ++DGL
Sbjct: 180 KDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKN------CNLDVTAYSGVVDGL 233

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK+G V +A  LF QM  K I PD+ TYN LIHG C  + W EA  LL  MM +G+ PDV
Sbjct: 234 CKDGMVFEALNLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDV 293

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            TFNVI     K G +  A  +   M+  G+  +  T+++++   C+  ++  A E+F  
Sbjct: 294 QTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDL 353

Query: 384 MESMGCKHTVFSY 396
           M S GC   + +Y
Sbjct: 354 MISKGCLPNIVTY 366



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   +   P L ++N L   L     +     L   +   G+ PD+ T+N++
Sbjct: 241 EALNLFSQMTG-KGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVI 299

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              F K G +S    +   ++      D V +TS+I   C  +++ +A  +F  + + GC
Sbjct: 300 AGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGC 359

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY++LI+G C T +   A+    EM N NG       PN VT++T+I G+CK G 
Sbjct: 360 LPNIVTYTSLIHGWCETKNMNKAMYFLGEMVN-NG-----LDPNVVTWSTLIGGVCKAGK 413

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKELFL M      P++ T   ++ G    N  +EA  L  E+       +++ +N+
Sbjct: 414 PVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNWDLNIIIYNI 473

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+D +C +GK+++A  L   +  +GV  +  T++ ++ G C  G ++ A++L + ME  G
Sbjct: 474 ILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAEDLLMKMEENG 533

Query: 389 C 389
           C
Sbjct: 534 C 534



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 141/314 (44%), Gaps = 42/314 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN++ G   KT       S+F  +   G+  D+ TY  +I   C + ++     V
Sbjct: 291 PDVQTFNVIAGRFFKTGMISRAKSIFSFMVHMGIEHDVVTYTSIIGAHCMLNQMKDAMEV 350

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P+ V +TSLI G C    + +A     ++   G  PNV+T+STLI G+C+
Sbjct: 351 FDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCK 410

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL--------------------- 263
            G  + A  LF  M + +G+      PN  T   I+DGL                     
Sbjct: 411 AGKPVAAKELFLVM-HKHGQL-----PNLQTCAIILDGLFKCNFHSEAMSLFRELEKMNW 464

Query: 264 --------------CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
                         C  G ++ A ELF  +  K +  DVVTYN +I G C     ++A  
Sbjct: 465 DLNIIIYNIILDGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMIKGLCKEGLLDDAED 524

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL++M + G  P+  T+NV +  L +  ++ ++++ L  M  +G   + +T   L++ F 
Sbjct: 525 LLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQADATTTKFLINYFS 584

Query: 370 LTGRVNHAKELFVS 383
              + N A E+F+ 
Sbjct: 585 -ANKENRALEVFLQ 597



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 36/129 (27%), Positives = 59/129 (45%)

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +D +     VD A + + +M      P V  +N L         +  A  L+  M   GV
Sbjct: 55  LDSMRNAKSVDVALDFYHKMVTMKPFPCVKDFNLLFSIVAKMKHYTTAISLIKHMSYIGV 114

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P V T N++++ LC+         +L LM   GV P+  TF+T+++G C+ G V  A  
Sbjct: 115 KPTVHTLNIVINCLCRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIR 174

Query: 380 LFVSMESMG 388
               ++ MG
Sbjct: 175 FVDHLKDMG 183


>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g62910-like [Vitis vinifera]
          Length = 539

 Score =  219 bits (559), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 128/340 (37%), Positives = 184/340 (54%), Gaps = 30/340 (8%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F  ML+M P PPP+  F  L   +AK KHY TVLSL K+++S G+ PD+YT 
Sbjct: 36  TLDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN FC + RV     VL +IL+    PD   FT+L++GLC   +I EA  +F K+  
Sbjct: 95  TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 154

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANG--------NGKFGVVCK------ 250
            G +PNV+TY TL+NGLC+      ALNLF EM A G        N     +C       
Sbjct: 155 EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSLIHALCNLCEWKH 214

Query: 251 --------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                         PN V+   ++D LCKEG V +A ++   M    + PDVVTY +L+ 
Sbjct: 215 VTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMD 274

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C  ++ +EA  +   M+  G   +VV++N +++  CK  ++D+A  L E M  + + P
Sbjct: 275 GHCLRSEMDEAVKVFDMMVRNGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIP 334

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           NT T+STL+ G C  GR+  A  LF  M + G    + +Y
Sbjct: 335 NTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTY 374



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 170/308 (55%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+      P + ++  L   L K +     L+LF  + + G+ PD++TYN L
Sbjct: 144 EALDVFDKMVG-EGFQPNVVTYGTLMNGLCKDRQLTEALNLFSEMIAKGISPDIFTYNSL 202

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C +    H   +L  +++S   P+ V+   ++  LC E ++ EA  +   +   G 
Sbjct: 203 IHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGV 262

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+V+TY+ L++G C       A+ +F+ M     + G VC  N V+Y T+I+G CK   
Sbjct: 263 EPDVVTYAALMDGHCLRSEMDEAVKVFDMMV----RNGCVC--NVVSYNTLINGYCKIQR 316

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +DKA  LF +M  + + P+ +TY++LIHG C+     +A  L  EM+  G  P++VT+++
Sbjct: 317 IDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSI 376

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCKN ++ EA  LL+ +    ++P+   ++  +DG C  G +  A++LF ++   G
Sbjct: 377 LLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRG 436

Query: 389 CKHTVFSY 396
            +  V+++
Sbjct: 437 LQPDVWTH 444



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+    SP   T +N L   L     +  V +L   +  + + P++ + NI+
Sbjct: 179 EALNLFSEMIAKGISPDIFT-YNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIV 237

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G+V+    V+  +++    PD V + +L+ G C  S + EA  +F  +   GC
Sbjct: 238 VDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGC 297

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             NV++Y+TLING C+      A+ LFEEM            PNT+TY+T+I GLC  G 
Sbjct: 298 VCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQE------LIPNTMTYSTLIHGLCHVGR 351

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M      P++VTY+ L+   C  +   EA  LL  +    + PDV  +N+
Sbjct: 352 LQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNI 411

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +D +C+ G ++ A  L   +  RG+ P+  T + ++ G C  G ++ A +LF  M+  G
Sbjct: 412 AIDGMCRAGDLEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENG 471

Query: 389 C 389
           C
Sbjct: 472 C 472



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 147/293 (50%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+     P  +T   L+ G   +++  D  + +F  +   G   ++ +YN L
Sbjct: 249 EAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSE-MDEAVKVFDMMVRNGCVCNVVSYNTL 307

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+ R+     +   + R    P+ + +++LI GLC   R+ +A ALF ++ A G 
Sbjct: 308 INGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVACGQ 367

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TYS L++ LC+      A+ L + +   N        P+   Y   IDG+C+ G 
Sbjct: 368 IPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN------LDPDVQVYNIAIDGMCRAGD 421

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  + + PDV T+N +I G C     +EA+ L  EM + G   +  T+N 
Sbjct: 422 LEAARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNT 481

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I   L +N K   A +LLE M+ RG + + ST + L+      G     K++ 
Sbjct: 482 ITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDGLDQSVKQIL 534



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 73/259 (28%), Positives = 124/259 (47%), Gaps = 7/259 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+        + S+N L     K +  D  + LF+ +    L P+  TY+ 
Sbjct: 283 DEAVKVFDMMVR-NGCVCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYST 341

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C +GR+     +   ++     P+ V ++ L+  LC   R+ EA AL   ++   
Sbjct: 342 LIHGLCHVGRLQDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSN 401

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V  Y+  I+G+CR G    A +LF  +A          +P+  T+  +I GLCK G
Sbjct: 402 LDPDVQVYNIAIDGMCRAGDLEAARDLFSNLAPRG------LQPDVWTHNIMIRGLCKRG 455

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +LF +M +     +  TYN++  G    N  + A  LL EM+ +G   DV T  
Sbjct: 456 LLDEASKLFREMDENGCLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTA 515

Query: 328 VIMDELCKNGKMDEASRLL 346
           +++  L  +G      ++L
Sbjct: 516 LLVKMLSDDGLDQSVKQIL 534


>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
          Length = 479

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 170/282 (60%), Gaps = 9/282 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  + SFN+L  C          LS F +L   G  P L T+N L++  C   RVS    
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++ +    P+ V FT+L+ GLC E R++EA AL  ++   G +PN ITY T+++G+C
Sbjct: 72  LFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T+ ALNL  +M   +       KP+ V Y+ IIDGL K+G    A+ LF++M+DK 
Sbjct: 128 KMGDTVSALNLLRKMEELSH-----IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG 182

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I PD+VTY+ +I+GFC +  W+EA  LL EM+ + + PDVVTF+ +++ L K G ++ A 
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            LL+ MI  GV PN  T +TL+DG C +G++  A E+F +M+
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 148/249 (59%), Gaps = 11/249 (4%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+Y++NILI CFC   ++       G++ +  F P  V F +L+ GLC E R+ EA  LF
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++    CKPNV+T++TL+NGLCR G  + A+ L + M           +PN +TY TI+
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG------LQPNQITYGTIV 123

Query: 261 DGLCKEGFVDKAKELFLQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           DG+CK G    A  L  +M++  +I PDVV Y+++I G        +A  L IEM D+G+
Sbjct: 124 DGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD+VT++ +++  C +GK  EA RLL+ M++R ++P+  TFS L++     G +N A++
Sbjct: 184 FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQD 243

Query: 380 LFVSMESMG 388
           L   M S G
Sbjct: 244 LLQEMISSG 252



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 7/290 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K   +    +LF  +   G+FPD+ TY+ +IN FC  G+ S    +
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L    +PD V F+ LI  L  E  +  A  L  ++ + G  PNV+T +TL++GLC 
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269

Query: 225 TGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           +G    AL +F+ M       +    F  V +P+  TY  +I GL  EG   +A+EL+ +
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGV-EPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  + I PD VTY+S+I+G C  +  +EA  +   M  +   P++VTFN ++   CK G 
Sbjct: 329 MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGM 388

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D+   L   M  RG+  N  T+ TL+ GF   G +N + ++F  M S G
Sbjct: 389 VDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 162/350 (46%), Gaps = 46/350 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M       P + +F  L   L +       ++L  R+   GL P+  TY  
Sbjct: 67  SEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 148 LINCFCKMGRVSHGFVVLGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++  CKMG       +L ++   S   PD V ++++I GL  + R  +A  LF +++  
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM---------ANGNGKFGVVCK------- 250
           G  P+++TYS +ING C +G    A  L +EM            +G    + K       
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-----------NINP 286
                        PN VT  T++DGLC  G +  A E+F  M+              + P
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV TYN LI G      + EA  L  EM  +G+ PD VT++ +++ LCK  ++DEA+++ 
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  +  +PN  TF+TL+ G+C  G V+   ELF  M   G      +Y
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+N N K G+    +  ++  +I   C    +  A   F ++     +P +VT+N+L+HG
Sbjct: 1   MSN-NIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHG 59

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C  +  +EA    +++  Q  +P+VVTF  +M+ LC+ G++ EA  LL+ M+  G+ PN
Sbjct: 60  LCVEDRVSEA----LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPN 115

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             T+ T++DG C  G    A  L   ME +
Sbjct: 116 QITYGTIVDGMCKMGDTVSALNLLRKMEEL 145



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+ ++N LI  FC  +    A     ++   G  P +VTFN ++  LC   ++ EA  L 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  TF+TLM+G C  GRV  A  L   M   G +    +Y
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119


>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
          Length = 479

 Score =  218 bits (556), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 113/282 (40%), Positives = 170/282 (60%), Gaps = 9/282 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  + SFN+L  C          LS F +L   G  P L T+N L++  C   RVS    
Sbjct: 12  PCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALD 71

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++ +    P+ V FT+L+ GLC E R++EA AL  ++   G +PN ITY T+++G+C
Sbjct: 72  LFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGTIVDGMC 127

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T+ ALNL  +M   +       KP+ V Y+ IIDGL K+G    A+ LF++M+DK 
Sbjct: 128 KMGDTVSALNLLRKMEELSH-----IKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKG 182

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I PD+VTY+ +I+GFC +  W+EA  LL EM+ + + PDVVTF+ +++ L K G ++ A 
Sbjct: 183 IFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQ 242

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            LL+ MI  GV PN  T +TL+DG C +G++  A E+F +M+
Sbjct: 243 DLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQ 284



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/249 (38%), Positives = 148/249 (59%), Gaps = 11/249 (4%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+Y++NILI CFC   ++       G++ +  F P  V F +L+ GLC E R+ EA  LF
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++    CKPNV+T++TL+NGLCR G  + A+ L + M           +PN +TY TI+
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDG------LQPNQITYGTIV 123

Query: 261 DGLCKEGFVDKAKELFLQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           DG+CK G    A  L  +M++  +I PDVV Y+++I G        +A  L IEM D+G+
Sbjct: 124 DGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGI 183

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD+VT++ +++  C +GK  EA RLL+ M++R ++P+  TFS L++     G +N A++
Sbjct: 184 FPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSAQD 243

Query: 380 LFVSMESMG 388
           L   M S G
Sbjct: 244 LLQEMISSG 252



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 152/290 (52%), Gaps = 7/290 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K   +    +LF  +   G+FPD+ TY+ +IN FC  G+ S    +
Sbjct: 150 PDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRL 209

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L    +PD V F+ LI  L  E  +  A  L  ++ + G  PNV+T +TL++GLC 
Sbjct: 210 LQEMLVRKISPDVVTFSGLINALVKEGDLNSAQDLLQEMISSGVCPNVVTCNTLLDGLCD 269

Query: 225 TGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           +G    AL +F+ M       +    F  V +P+  TY  +I GL  EG   +A+EL+ +
Sbjct: 270 SGKLKDALEMFKAMQKSMMDIDATHAFNGV-EPDVQTYNILISGLINEGKFLEAEELYEE 328

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  + I PD VTY+S+I+G C  +  +EA  +   M  +   P++VTFN ++   CK G 
Sbjct: 329 MPHRGIVPDTVTYSSMINGLCKQSRLDEATQMFDSMGSKSFSPNIVTFNTLITGYCKAGM 388

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D+   L   M  RG+  N  T+ TL+ GF   G +N + ++F  M S G
Sbjct: 389 VDDGLELFCEMGRRGIVANAITYITLIRGFRKVGNINGSLDIFQEMISSG 438



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 162/350 (46%), Gaps = 46/350 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M       P + +F  L   L +       ++L  R+   GL P+  TY  
Sbjct: 67  SEALDLFHQM-----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITYGT 121

Query: 148 LINCFCKMGRVSHGFVVLGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++  CKMG       +L ++   S   PD V ++++I GL  + R  +A  LF +++  
Sbjct: 122 IVDGMCKMGDTVSALNLLRKMEELSHIKPDVVIYSAIIDGLWKDGRHTDAQNLFIEMQDK 181

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM---------ANGNGKFGVVCK------- 250
           G  P+++TYS +ING C +G    A  L +EM            +G    + K       
Sbjct: 182 GIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLVRKISPDVVTFSGLINALVKEGDLNSA 241

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-----------NINP 286
                        PN VT  T++DGLC  G +  A E+F  M+              + P
Sbjct: 242 QDLLQEMISSGVCPNVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAFNGVEP 301

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV TYN LI G      + EA  L  EM  +G+ PD VT++ +++ LCK  ++DEA+++ 
Sbjct: 302 DVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDEATQMF 361

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  +  +PN  TF+TL+ G+C  G V+   ELF  M   G      +Y
Sbjct: 362 DSMGSKSFSPNIVTFNTLITGYCKAGMVDDGLELFCEMGRRGIVANAITY 411



 Score = 78.6 bits (192), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 80/150 (53%), Gaps = 5/150 (3%)

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+N N K G+    +  ++  +I   C    +  A   F ++     +P +VT+N+L+HG
Sbjct: 1   MSN-NIKHGLQIPCDIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHG 59

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C  +  +EA    +++  Q  +P+VVTF  +M+ LC+ G++ EA  LL+ M+  G+ PN
Sbjct: 60  LCVEDRVSEA----LDLFHQMCKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPN 115

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             T+ T++DG C  G    A  L   ME +
Sbjct: 116 QITYGTIVDGMCKMGDTVSALNLLRKMEEL 145



 Score = 54.7 bits (130), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 4/110 (3%)

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+ ++N LI  FC  +    A     ++   G  P +VTFN ++  LC   ++ EA  L 
Sbjct: 14  DIYSFNILIKCFCSCSKLPFALSTFGKLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLF 73

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  TF+TLM+G C  GRV  A  L   M   G +    +Y
Sbjct: 74  HQM----CKPNVVTFTTLMNGLCREGRVVEAVALLDRMVEDGLQPNQITY 119


>gi|242069921|ref|XP_002450237.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
 gi|241936080|gb|EES09225.1| hypothetical protein SORBIDRAFT_05g002370 [Sorghum bicolor]
          Length = 757

 Score =  218 bits (554), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 130/357 (36%), Positives = 188/357 (52%), Gaps = 24/357 (6%)

Query: 52  LKESLRLTVK-DRA-SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTS 109
           +  S R+T   DR   LE+ + +R  S   G       N+A  +FD ML     P  + +
Sbjct: 1   MSRSRRVTAAADRCLELERVIADRAHSGSLG------LNDALKLFDEMLT-HARPASVRA 53

Query: 110 FNLLFGCLAKTK---HYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFV 163
           FN L   +++ +     + V+SLF R+    S  + P  +TY ILI CFC+MGR+ HGF 
Sbjct: 54  FNQLLTAVSRARCSSASELVVSLFNRMIRECSIKVAPSSFTYTILIGCFCRMGRLKHGFA 113

Query: 164 VLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLING 221
             G IL++ +   D V F+ L+KGLC   R+ EA   L  ++  FGC P+V +YS L+ G
Sbjct: 114 AFGLILKTGWRVNDTVIFSQLLKGLCDAKRVDEATDILLRRMPEFGCTPDVFSYSILLKG 173

Query: 222 LCRTGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            C       AL L   MA+ G+G       PN VTYTT+IDGLCK   VD+AK +F  M 
Sbjct: 174 FCNEKRAEEALELLSMMADDGDGSH----TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMI 229

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           DK + P+  TY  LIHG+     W E   +L EM   G+QPD   + V++D LCKNG+  
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSIGKWKEVVQMLQEMSTHGLQPDCYIYAVLLDYLCKNGRCT 289

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           EA  + + +I +G+ PN + +  L+ G+   G ++        M   G    H +F+
Sbjct: 290 EARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFN 346



 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 164/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F +M++    P   T   L+ G L+  K +  V+ + + +++ GL PD Y Y +
Sbjct: 219 DRAKGVFQHMIDKGVRPNNHTYTCLIHGYLSIGK-WKEVVQMLQEMSTHGLQPDCYIYAV 277

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR +    +   ++R    P+   +  L+ G   E  + E  +    +   G
Sbjct: 278 LLDYLCKNGRCTEARNIFDSVIRKGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNG 337

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+   ++ +     +      A+++F++M            PN VTY  +ID LCK G
Sbjct: 338 VSPDHHIFNIMFCAYAKKAMIDEAMHIFDKMRQQR------LSPNIVTYGALIDALCKLG 391

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A   F QM D+ + PD+  ++SL++G C  + W +A  L  E++DQG++ D V FN
Sbjct: 392 RVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRLDTVFFN 451

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +M  LC+ G++ EA RL++LM+  GV P+  +++TL+DG CLTGR++ A +L   + S+
Sbjct: 452 TLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSI 511

Query: 388 GCKHTVFSY 396
           G K    +Y
Sbjct: 512 GLKPDKVTY 520



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 166/317 (52%), Gaps = 7/317 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T  + +E     D M+    SP     FN++F   AK    D  + +F ++    L
Sbjct: 315 HGYATEGSLSEMHSFLDLMVGNGVSPDHHI-FNIMFCAYAKKAMIDEAMHIFDKMRQQRL 373

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++ TY  LI+  CK+GRV    +   +++    TPD   F+SL+ GLC   +  +A  
Sbjct: 374 SPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGMTPDIFVFSSLVYGLCTVDKWEKAEE 433

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF ++   G + + + ++TL+  LCR G  + A  L + M     + GV  +P+ ++Y T
Sbjct: 434 LFFEVLDQGIRLDTVFFNTLMCNLCREGRVMEAQRLIDLML----RVGV--RPDVISYNT 487

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++DG C  G +D+A +L   +    + PD VTYN+L+HG+C A   ++A  L  EM+ +G
Sbjct: 488 LVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKG 547

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + PDVVT+N I+  L + G+  EA  L   MI      N  T++ +++G C    V+ A 
Sbjct: 548 LTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIIINGLCKNNFVDEAF 607

Query: 379 ELFVSMESMGCKHTVFS 395
           ++F S+ S   +  +F+
Sbjct: 608 KMFHSLCSKDLQLDIFT 624



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/308 (27%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD ++  +   P +T + +L    A       + S    +   G+ PD + +NI+
Sbjct: 290 EARNIFDSVIR-KGIKPNVTIYGILLHGYATEGSLSEMHSFLDLMVGNGVSPDHHIFNIM 348

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              + K   +     +  ++ +   +P+ V + +LI  LC   R+ +A   F ++   G 
Sbjct: 349 FCAYAKKAMIDEAMHIFDKMRQQRLSPNIVTYGALIDALCKLGRVDDAVLKFNQMIDEGM 408

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++  +S+L+ GLC       A  LF E+ +   +       +TV + T++  LC+EG 
Sbjct: 409 TPDIFVFSSLVYGLCTVDKWEKAEELFFEVLDQGIRL------DTVFFNTLMCNLCREGR 462

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A+ L   M    + PDV++YN+L+ G C     +EA  LL  ++  G++PD VT+N 
Sbjct: 463 VMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIVSIGLKPDKVTYNT 522

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CK  ++D+A  L   M+++G+ P+  T++T++ G   TGR + AKEL++SM +  
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR 582

Query: 389 CKHTVFSY 396
            +  +++Y
Sbjct: 583 TQMNIYTY 590



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 128/268 (47%), Gaps = 6/268 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L   L +         L   +   G+ PD+ +YN L++  C  GR+     +L  I+
Sbjct: 450 FNTLMCNLCREGRVMEAQRLIDLMLRVGVRPDVISYNTLVDGHCLTGRIDEAAKLLDVIV 509

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD V + +L+ G C   RI +A +LF ++   G  P+V+TY+T+++GL +TG   
Sbjct: 510 SIGLKPDKVTYNTLLHGYCKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFS 569

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L+  M N   +       N  TY  II+GLCK  FVD+A ++F  +  K++  D+ 
Sbjct: 570 EAKELYLSMINSRTQM------NIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIF 623

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T N +I          +A  L   +   G+ PDV T+ +I + L K G ++E   L   M
Sbjct: 624 TANIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAM 683

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
              G  PN+   + L+      G +N A
Sbjct: 684 EENGTAPNSRMLNALVRWLLHRGDINRA 711



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 59/139 (42%), Gaps = 1/139 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  ++  M+N R +   + ++N++   L K    D    +F  L S  L  D++T NI
Sbjct: 569 SEAKELYLSMINSR-TQMNIYTYNIIINGLCKNNFVDEAFKMFHSLCSKDLQLDIFTANI 627

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I    K GR      +   I      PD   +  + + L  E  + E   LF+ ++  G
Sbjct: 628 MIGALLKGGRKEDAMDLFATISAYGLVPDVETYCLIAENLIKEGSLEELDELFSAMEENG 687

Query: 208 CKPNVITYSTLINGLCRTG 226
             PN    + L+  L   G
Sbjct: 688 TAPNSRMLNALVRWLLHRG 706


>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
 gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 559

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 182/328 (55%), Gaps = 42/328 (12%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  RP  P +  FN L   +AK K +D V+SL +++   G+  +LYTYNILINCFC+  
Sbjct: 1   MVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRS 59

Query: 157 RVSHGFVVLGRILR-----------------------------------SCFTPDAVAFT 181
           ++S    +LG++++                                     + PD + FT
Sbjct: 60  QISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFT 119

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI GL   ++  EA AL  ++   GC+PN++TY  ++NGLC+ G   +A NL  +M   
Sbjct: 120 TLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAA 179

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                   + + V + TIID LCK   VD A  LF +M+ K I P+VVTY+SLI   C  
Sbjct: 180 K------IEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSY 233

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             W++A+ LL +M+++ + P++VTFN ++D   K GK  EA +L + MI R ++P+  T+
Sbjct: 234 GRWSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTY 293

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++L++GFC+  R++ AK++F  M S  C
Sbjct: 294 NSLINGFCMHDRLDKAKQMFEFMVSKDC 321



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 153/287 (53%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L  ++
Sbjct: 188 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 247

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F +LI     E + +EA  L   +      P++ TY++LING C      
Sbjct: 248 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 307

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FE M + +      C P+  TY T+I G CK   V+   ELF +M  + +  D V
Sbjct: 308 KAKQMFEFMVSKD------CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 361

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LI G  +  D + A  +  +M+  GV PD++T+++++D LC NGK+++A  + + M
Sbjct: 362 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 421

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               +  +   ++T+++G C  G+V+   +LF S+   G K  V +Y
Sbjct: 422 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 468



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 142/283 (50%), Gaps = 8/283 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     K   +     L   +    + PD++TYN LIN FC   R+     +
Sbjct: 253 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 312

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              ++ + CF PD   + +LIKG C   R+ +   LF ++   G   + +TY+TLI GL 
Sbjct: 313 FEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 371

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  +F++M +     GV   P+ +TY+ ++DGLC  G ++KA E+F  M+   
Sbjct: 372 HDGDCDNAQKVFKQMVSD----GV--PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 425

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D+  Y ++I G C A   ++   L   +  +GV+P+VVT+N ++  LC    + EA 
Sbjct: 426 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 485

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            LL+ M   G  P++ T++TL+      G    + EL   M S
Sbjct: 486 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 528



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 130/261 (49%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+  R   P + ++N L          D    +F+ + S   FPDL TYN L
Sbjct: 273 EAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 331

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   +       D V +T+LI+GL  +     A  +F ++ + G 
Sbjct: 332 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 391

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TYS L++GLC  G    AL +F+ M     K  +        YTT+I+G+CK G 
Sbjct: 392 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI------YIYTTMIEGMCKAGK 445

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD   +LF  +  K + P+VVTYN++I G C      EA  LL +M + G  PD  T+N 
Sbjct: 446 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNT 505

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++    ++G    ++ L+  M
Sbjct: 506 LIRAHLRDGDKAASAELIREM 526


>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
          Length = 348

 Score =  216 bits (551), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 113/304 (37%), Positives = 175/304 (57%), Gaps = 11/304 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER  SSG  DI     ++A  +F  M+  RP  P +  F+ LF  +AKTK Y+ VLSL 
Sbjct: 50  RERL-SSGIADIK---KDDAVDLFQSMIRSRP-LPSIIDFSRLFSAVAKTKQYELVLSLC 104

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K++   G+   +YT +I+INCFC+  ++   F VLG+IL+  + PD V F++L+ GLC E
Sbjct: 105 KQMELQGIAHSIYTLSIVINCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLE 164

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            R+ EA  +  ++     +PN++T +TL+NGLC       A  L + M          C+
Sbjct: 165 GRVSEAVVIVDRMVEMKVRPNLVTLNTLVNGLCLKDQVSEAEALVDRMVEHG------CQ 218

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+  TY  I++ +CK G    A +L  +M+DK + P VVTYN +I   C   +++EA  L
Sbjct: 219 PDQFTYGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSL 278

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             EM  +G++ DV+T+N ++   C  G+ D+ ++LL  MI R + PN  TFS L+D F  
Sbjct: 279 FNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRNITPNVVTFSALIDCFVK 338

Query: 371 TGRV 374
            G++
Sbjct: 339 EGKL 342



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++RS   P  + F+ L   +    +     +L  +++  G   ++ T S +IN  CR   
Sbjct: 72  MIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIVINCFCRRRK 131

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A ++  ++     K G   +P+TVT++T+++GLC EG V +A  +  +M +  + P+
Sbjct: 132 LGFAFSVLGKIL----KLGY--EPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKVRPN 185

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +VT N+L++G C  +  +EA  L+  M++ G QPD  T+  I++ +CK+G    A  LL 
Sbjct: 186 LVTLNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLR 245

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  + V P   T++ ++D  C  G  + A  LF  ME  G K  V +Y
Sbjct: 246 KMEDKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITY 294



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 63/142 (44%), Gaps = 1/142 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+     P   T +  +   + K+ +  + L L +++    + P + TYN+
Sbjct: 203 SEAEALVDRMVEHGCQPDQFT-YGPILNRICKSGNTVSALDLLRKMEDKKVKPQVVTYNM 261

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G       +   + R     D + + SLI G C   R  + A L   +    
Sbjct: 262 IIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRWDDGAQLLRDMITRN 321

Query: 208 CKPNVITYSTLINGLCRTGHTI 229
             PNV+T+S LI+   + G  I
Sbjct: 322 ITPNVVTFSALIDCFVKEGKLI 343



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 58/121 (47%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A +LF  M      P ++ ++ L         +     L  +M  QG+   + T +++
Sbjct: 63  DDAVDLFQSMIRSRPLPSIIDFSRLFSAVAKTKQYELVLSLCKQMELQGIAHSIYTLSIV 122

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++  C+  K+  A  +L  ++  G  P+T TFSTL++G CL GRV+ A  +   M  M  
Sbjct: 123 INCFCRRRKLGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMKV 182

Query: 390 K 390
           +
Sbjct: 183 R 183


>gi|356536611|ref|XP_003536830.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
           mitochondrial-like [Glycine max]
          Length = 578

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 188/327 (57%), Gaps = 24/327 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M++M P P  +  F  + G +AK ++Y T + L+  +   G+ P   T+NI
Sbjct: 36  DDAVALFHRMVDMHPLPS-IVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFTVTFNI 94

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC MG++   F V+G+IL+    P+ V FT+L+KG C   ++++A  ++ ++ A  
Sbjct: 95  LINCFCHMGQMDFAFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDALYIYDEMVARR 154

Query: 208 CKPNVITYSTLINGLCRT--GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            + + + Y TLINGLC++  G    A+ L ++M         + KPN + Y T++ GLCK
Sbjct: 155 IRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQ-----LVKPNLIMYNTVVHGLCK 209

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIH----------------GFCYANDWNEANC 309
           +G +++A+ L  +M  + I PD+ TY+SLI+                GFC  N  +EA  
Sbjct: 210 DGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARE 269

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   M+++G Q D++ +N++M+  C N K+ EA +L  +M+ RG  P+T T++ LM G+C
Sbjct: 270 LFNVMIERGEQHDIINYNILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYC 329

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
           L  +V+ A+ LF  M   G    V+SY
Sbjct: 330 LIDKVDEARNLFHGMIERGLVPDVWSY 356



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 143/276 (51%), Gaps = 11/276 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  +F  M+     P  +T   L+ G CL      D   +LF  +   GL PD+++YNI
Sbjct: 301 EARKLFHMMVERGEQPDTITYTILMHGYCL--IDKVDEARNLFHGMIERGLVPDVWSYNI 358

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  +CK  RV     +L  +      P+ + + S++ GLC    I++A  L  ++  + 
Sbjct: 359 LIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEMH-YC 417

Query: 208 CKP--NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           C+P  +V TY+ L+  LCR      A+  F+ +      F     PN  +Y  +I G CK
Sbjct: 418 CQPPPDVTTYNILLESLCRIECVEKAIAFFKHLI-----FERSFAPNVWSYNILISGCCK 472

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              +D+A  LF  M  KN+ PD+VTYN L+         ++A  LL++++DQG+ P++ T
Sbjct: 473 NRRLDEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRT 532

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           +N++++ L K G+   A ++   + +RG +P+  T+
Sbjct: 533 YNILINGLHKGGRPKTAQKISLYLSIRGYHPDVKTY 568



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 165/332 (49%), Gaps = 15/332 (4%)

Query: 74  CKSSGQGDITAI--------TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
           C++  + ++T++          +EA  +F+ M+  R     + ++N+L            
Sbjct: 243 CRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIE-RGEQHDIINYNILMNGYCLNNKVGE 301

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
              LF  +   G  PD  TY IL++ +C + +V     +   ++     PD  ++  LIK
Sbjct: 302 ARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIERGLVPDVWSYNILIK 361

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C   R+ EA  L   +      PN+ITY+++++GLC++G  + A  L +EM      +
Sbjct: 362 GYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILDAWKLVDEM-----HY 416

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-DKNINPDVVTYNSLIHGFCYANDW 304
                P+  TY  +++ LC+   V+KA   F  +  +++  P+V +YN LI G C     
Sbjct: 417 CCQPPPDVTTYNILLESLCRIECVEKAIAFFKHLIFERSFAPNVWSYNILISGCCKNRRL 476

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  L   M  + + PD+VT+N+++D L    ++D+A  LL  ++ +G++PN  T++ L
Sbjct: 477 DEAINLFNHMCFKNLVPDIVTYNILLDALFNGQQLDKAIALLVQIVDQGISPNLRTYNIL 536

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++G    GR   A+++ + +   G    V +Y
Sbjct: 537 INGLHKGGRPKTAQKISLYLSIRGYHPDVKTY 568



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 14/309 (4%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   +L     P  +T   L+ G     K  D  L ++  + +  +  D   Y  LI
Sbjct: 108 AFSVMGKILKWGCRPNVVTFTTLMKGFCVNDKMLDA-LYIYDEMVARRIRFDDVLYGTLI 166

Query: 150 NCFCK--MGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           N  CK  +G+      +L ++  R    P+ + + +++ GLC +  I EA  L +K+   
Sbjct: 167 NGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQ 226

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFE------EMANGNGKFGVVC----KPNTVTY 256
           G  P++ TYS+LI GLCR G      +L        ++      F V+     + + + Y
Sbjct: 227 GIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNKVDEARELFNVMIERGEQHDIINY 286

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +++G C    V +A++LF  M ++   PD +TY  L+HG+C  +  +EA  L   M++
Sbjct: 287 NILMNGYCLNNKVGEARKLFHMMVERGEQPDTITYTILMHGYCLIDKVDEARNLFHGMIE 346

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G+ PDV ++N+++   CK  ++ EA  LLE M L+ + PN  T+++++DG C +G +  
Sbjct: 347 RGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITYNSVVDGLCKSGGILD 406

Query: 377 AKELFVSME 385
           A +L   M 
Sbjct: 407 AWKLVDEMH 415



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 147/310 (47%), Gaps = 34/310 (10%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P  A  +   M   +   P L  +N +   L K  + +    L  ++   G+FPD++TY+
Sbjct: 177 PRAAVQLLQKMEERQLVKPNLIMYNTVVHGLCKDGNINEARVLCSKMIVQGIFPDIFTYS 236

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI   C+ G+                       TSL+ G C  +++ EA  LF  +   
Sbjct: 237 SLIYGLCRAGQRKE-------------------VTSLLNGFCLNNKVDEARELFNVMIER 277

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G + ++I Y+ L+NG C       A  LF  M    G+     +P+T+TYT ++ G C  
Sbjct: 278 GEQHDIINYNILMNGYCLNNKVGEARKLFHMMVE-RGE-----QPDTITYTILMHGYCLI 331

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             VD+A+ LF  M ++ + PDV +YN LI G+C      EA  LL +M  + + P+++T+
Sbjct: 332 DKVDEARNLFHGMIERGLVPDVWSYNILIKGYCKFERVGEAMNLLEDMFLKNLVPNIITY 391

Query: 327 NVIMDELCKNGKMDEASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           N ++D LCK+G + +A +L+ E+       P+ +T++ L++  C    V  A   F    
Sbjct: 392 NSVVDGLCKSGGILDAWKLVDEMHYCCQPPPDVTTYNILLESLCRIECVEKAIAFF---- 447

Query: 386 SMGCKHTVFS 395
               KH +F 
Sbjct: 448 ----KHLIFE 453



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 74/263 (28%), Positives = 131/263 (49%), Gaps = 25/263 (9%)

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK   +     +  R++     P  V FT ++  +        A  L+T ++  G  P  
Sbjct: 30  CKFDSIDDAVALFHRMVDMHPLPSIVEFTKILGTIAKMRYYATAIDLYTLMEYKGVVPFT 89

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +T++ LIN  C  G    A ++  ++     K+G  C+PN VT+TT++ G C    +  A
Sbjct: 90  VTFNILINCFCHMGQMDFAFSVMGKIL----KWG--CRPNVVTFTTLMKGFCVNDKMLDA 143

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWN-EANCLLIEMMD--QGVQPDVVTFNVI 329
             ++ +M  + I  D V Y +LI+G C +      A   L++ M+  Q V+P+++ +N +
Sbjct: 144 LYIYDEMVARRIRFDDVLYGTLINGLCKSKIGKPRAAVQLLQKMEERQLVKPNLIMYNTV 203

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFS----------------TLMDGFCLTGR 373
           +  LCK+G ++EA  L   MI++G+ P+  T+S                +L++GFCL  +
Sbjct: 204 VHGLCKDGNINEARVLCSKMIVQGIFPDIFTYSSLIYGLCRAGQRKEVTSLLNGFCLNNK 263

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           V+ A+ELF  M   G +H + +Y
Sbjct: 264 VDEARELFNVMIERGEQHDIINY 286


>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62914, mitochondrial; Flags: Precursor
 gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
           repeats. EST gb|AA728420 comes from this gene
           [Arabidopsis thaliana]
 gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 528

 Score =  216 bits (550), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 117/350 (33%), Positives = 191/350 (54%), Gaps = 42/350 (12%)

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           ++ I  ++A  +F  M   RP P  +  F+ L   +AK   +D V+S  +++   G+  +
Sbjct: 54  LSDIELDDAIGLFGVMAQSRPFPS-IIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHN 112

Query: 142 LYTYNILINCFC----------------KMG-------------------RVSHGFVVLG 166
           LYTYNILINCFC                K+G                   R+S    ++ 
Sbjct: 113 LYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVD 172

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +++   + PD V FT+LI GL   ++  EA AL  ++   GC+P+++TY  ++NGLC+ G
Sbjct: 173 QMVEMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTYGAVVNGLCKRG 232

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T +ALNL  +M           + N V Y+T+ID LCK    D A  LF +M++K + P
Sbjct: 233 DTDLALNLLNKMEAAK------IEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRP 286

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V+TY+SLI   C    W++A+ LL +M+++ + P++VTF+ ++D   K GK+ +A +L 
Sbjct: 287 NVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLY 346

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E MI R ++PN  T+S+L++GFC+  R+  AK++   M    C   V +Y
Sbjct: 347 EEMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTY 396



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 151/274 (55%), Gaps = 6/274 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ +   L K +H D  L+LF  + + G+ P++ TY+ LI+C C  GR S    +L  ++
Sbjct: 256 YSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASRLLSDMI 315

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F++LI     + ++++A  L+ ++      PN+ TYS+LING C      
Sbjct: 316 ERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLG 375

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + E M   +      C PN VTY T+I+G CK   VDK  ELF +M  + +  + V
Sbjct: 376 EAKQMLELMIRKD------CLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTV 429

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LIHGF  A D + A  +  +M+  GV P+++T+N+++D LCKNGK+ +A  + E +
Sbjct: 430 TYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNILLDGLCKNGKLAKAMVVFEYL 489

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
               + P+  T++ +++G C  G+       FV+
Sbjct: 490 QRSTMEPDIYTYNIMIEGMCKAGKWKMGGIYFVA 523



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 162/344 (47%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+ M   P  +T   L+ G     K  + V +L  R+   G  PDL TY  
Sbjct: 165 SDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHNKASEAV-ALIDRMVQRGCQPDLVTYGA 223

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  CK G       +L ++  +    + V ++++I  LC      +A  LFT+++  G
Sbjct: 224 VVNGLCKRGDTDLALNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDALNLFTEMENKG 283

Query: 208 CKPNVITYSTLINGLC-----------------------------------RTGHTIVAL 232
            +PNVITYS+LI+ LC                                   + G  + A 
Sbjct: 284 VRPNVITYSSLISCLCNYGRWSDASRLLSDMIERKINPNLVTFSALIDAFVKKGKLVKAE 343

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L+EEM   +        PN  TY+++I+G C    + +AK++   M  K+  P+VVTYN
Sbjct: 344 KLYEEMIKRS------IDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYN 397

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI+GFC A   ++   L  EM  +G+  + VT+  ++    +    D A  + + M+  
Sbjct: 398 TLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSV 457

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GV+PN  T++ L+DG C  G++  A  +F  ++    +  +++Y
Sbjct: 458 GVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTY 501



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 62/204 (30%), Positives = 102/204 (50%), Gaps = 6/204 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P L +F+ L     K         L++ +    + P+++TY+ LIN FC + R+  
Sbjct: 317 RKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMIKRSIDPNIFTYSSLINGFCMLDRLGE 376

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++R    P+ V + +LI G C   R+ +   LF ++   G   N +TY+TLI+
Sbjct: 377 AKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNTVTYTTLIH 436

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G  +      A  +F++M +      V   PN +TY  ++DGLCK G + KA  +F  ++
Sbjct: 437 GFFQARDCDNAQMVFKQMVS------VGVHPNILTYNILLDGLCKNGKLAKAMVVFEYLQ 490

Query: 281 DKNINPDVVTYNSLIHGFCYANDW 304
              + PD+ TYN +I G C A  W
Sbjct: 491 RSTMEPDIYTYNIMIEGMCKAGKW 514



 Score = 45.1 bits (105), Expect = 0.061,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  M+++   P  LT +N+L   L K       + +F+ L  + + PD+YTYNI
Sbjct: 445 DNAQMVFKQMVSVGVHPNILT-YNILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNI 503

Query: 148 LINCFCKMGRVSHG 161
           +I   CK G+   G
Sbjct: 504 MIEGMCKAGKWKMG 517


>gi|242067341|ref|XP_002448947.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
 gi|241934790|gb|EES07935.1| hypothetical protein SORBIDRAFT_05g002250 [Sorghum bicolor]
          Length = 797

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 124/343 (36%), Positives = 184/343 (53%), Gaps = 21/343 (6%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----- 119
            LE+ +  R +S   G       ++A  +FD +L     P  + +FN L   +++     
Sbjct: 14  ELERVIGSRARSGSLG------LDDALKLFDGLLT-HARPASIIAFNHLLTAVSRVSGRR 66

Query: 120 --TKHYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
             T   + V+SLF R+    +  + PDL TY+ILI CFC+MGR+ HGF   G IL+S + 
Sbjct: 67  SSTTESELVVSLFNRMIRECTIKVTPDLCTYSILIGCFCRMGRLEHGFATFGLILKSGWR 126

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            + +    L+KGLC   R+ EA  +  K +   GC P+V++Y+TL+ G C       AL 
Sbjct: 127 VNNIVINQLLKGLCDAKRLREAMDILIKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALE 186

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   MA+  G+    C PN V+Y T+I+G   EG VDKA  LFL+M D+ I P+VVTY +
Sbjct: 187 LLHMMADSQGR---SCPPNVVSYATVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTT 243

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +I G C A   + A  +  +M+D+GV+PD  T+N ++      GK  E  R+LE M   G
Sbjct: 244 VIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHG 303

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + P+  T+ +L++  C  GR   A+  F SM   G K  V  Y
Sbjct: 304 LKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKGIKPNVAIY 346



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 166/338 (49%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +F  M++ R   P + ++  +   L K +  D    +F+++   G+ PD  TYN 
Sbjct: 220 DKAYNLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNC 278

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +  +G+      +L  +      PD   + SL+  LC   R  EA   F  +   G
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFFFDSMIRKG 338

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGVV-------------- 248
            KPNV  Y  LI+G    G     H ++ L +   ++  +  F ++              
Sbjct: 339 IKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAM 398

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V +  +ID LCK G VD A   F QM ++ + P++  +NSL++G 
Sbjct: 399 HIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGL 458

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W +A     EM++QG++PDVV FN I+  LC  G++ +A RL++LM   G  P+ 
Sbjct: 459 CTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPDV 518

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++TL+ G CL GR++ A +    M S+G K   ++Y
Sbjct: 519 ISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTY 556



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/327 (27%), Positives = 151/327 (46%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN++F   AK    D  + +F ++   GL PD+  +  LI+  CK+GRV    + 
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLK 435

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCA----------------------------------- 189
             +++     P+   F SL+ GLC                                    
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           + ++M+A  L   ++  G +P+VI+Y+TLI G C  G    A    + M        V  
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVM------LSVGL 549

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KP+  TY T++ G C+ G +D A  +F +M    I P VVTY++++HG      ++EA  
Sbjct: 550 KPDEWTYNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKE 609

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L + M+  G Q ++  +N+I++ L KN  +DEA +L + +  +      +TF+ ++    
Sbjct: 610 LYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALF 669

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            +GR   A  LF ++ S G    VF+Y
Sbjct: 670 KSGRNEDAMHLFATISSYGLVPDVFTY 696



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   FD M+  +   P +  + +L    A       +  L   +   GL PD + +NI+
Sbjct: 326 EARFFFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              + K   +     +  ++ +   +PD V F +LI  LC   R+ +A   F ++   G 
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNFGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+  +++L+ GLC       A   + EM N         +P+ V + TI+  LC +G 
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG------IRPDVVFFNTILCNLCTKGQ 498

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V KA+ L   M+     PDV++Y +LI G C     +EA   L  M+  G++PD  T+N 
Sbjct: 499 VMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNT 558

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C+ G++D+A  +   M+  G+ P   T+ST++ G   T R + AKEL+++M + G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 389 CKHTVFSY 396
            +  ++ Y
Sbjct: 619 KQWNIWIY 626



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P      +L++G L     ++     +  + + G+ PD+  +N 
Sbjct: 430 DDAVLKFNQMMNEGVAPNIFVFNSLVYG-LCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C  G+V     ++  + R    PD +++T+LI G C   RI EAA     + + G
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+  TY+TL++G CR G    A  +F EM   NG       P  VTY+TI+ GL    
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLR-NG-----ITPGVVTYSTILHGLFTTR 602

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AKEL+L M       ++  YN +++G    N  +EA  L   +  +  Q ++ TFN
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K+G+ ++A  L   +   G+ P+  T+  + +     G +    +LF +ME  
Sbjct: 663 IMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS 722

Query: 388 G 388
           G
Sbjct: 723 G 723



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 67/276 (24%), Positives = 115/276 (41%), Gaps = 6/276 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+  L G        D        + S GL PD +TYN L++ +C+ GR+   + V
Sbjct: 516 PDVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR+  TP  V +++++ GL    R  EA  L+  +   G + N+  Y+ ++NGL +
Sbjct: 576 FREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSK 635

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF+ + + + +  +       T+  +I  L K G  + A  LF  +    +
Sbjct: 636 NNCVDEAFKLFQSLCSKDFQLEIT------TFNIMIGALFKSGRNEDAMHLFATISSYGL 689

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY  +           E + L   M   G  P+    N ++  L   G +  A  
Sbjct: 690 VPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGA 749

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            L  +  +  +   ST + L+         +HA  L
Sbjct: 750 YLSKLDEKNFSLEASTTAMLISLLSRDEYHHHATSL 785



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 1/150 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +F  + + +     +T+FN++ G L K+   +  + LF  ++S GL PD++TY +
Sbjct: 640 DEAFKLFQSLCS-KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCL 698

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +     + G +     +   + +S  TP++    +L++ L     I  A A  +KL    
Sbjct: 699 IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLSKLDEKN 758

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEE 237
                 T + LI+ L R  +   A +L E+
Sbjct: 759 FSLEASTTAMLISLLSRDEYHHHATSLPEK 788


>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g62680, mitochondrial; Flags: Precursor
 gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 548

 Score =  215 bits (547), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 119/356 (33%), Positives = 191/356 (53%), Gaps = 33/356 (9%)

Query: 70  LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
           L+ER   +   DI     N+A  +F  M+  RP P  +  FN L   + K K YD V+SL
Sbjct: 52  LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISL 107

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            K++   G+  DLYT+NI+INCFC   +VS    +LG++L+  + PD V   SL+ G C 
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV- 248
            +R+ +A +L  K+   G KP+++ Y+ +I+ LC+T     A + F+E+     +  VV 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227

Query: 249 ----------------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                                         PN +TY+ ++D   K G V +AKELF +M 
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +I+PD+VTY+SLI+G C  +  +EAN +   M+ +G   DVV++N +++  CK  +++
Sbjct: 288 RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 347

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +L   M  RG+  NT T++TL+ GF   G V+ A+E F  M+  G    +++Y
Sbjct: 348 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 167/336 (49%), Gaps = 42/336 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+ +    P + ++N +   L KTK  +     FK +   G+ P++ TY  
Sbjct: 172 SDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 148 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 172
           L+N  C   R S                           FV  G++L          R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD V ++SLI GLC   RI EA  +F  + + GC  +V++Y+TLING C+       +
Sbjct: 291 IDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF EM+    + G+V   NTVTY T+I G  + G VDKA+E F QM    I+PD+ TYN
Sbjct: 351 KLFREMS----QRGLV--SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            L+ G C   +  +A  +  +M  + +  D+VT+  ++  +CK GK++EA  L   + L+
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G+ P+  T++T+M G C  G ++  + L+  M+  G
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500


>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 621

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 115/292 (39%), Positives = 165/292 (56%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L  CL K   +D  L L   +   G  PD+ TYN LI+   K GR+S  F +
Sbjct: 77  PNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLGKAGRLSEAFTL 136

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   + SLI GL    R  +A  L  +++  GC P+V+TYS+LI GL +
Sbjct: 137 FAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGLGK 196

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T+ A  LF+EM    G+     KP+++T+T ++D L K G VD A EL  +MK++ +
Sbjct: 197 DGETVKAFKLFQEMKR-RGR-----KPDSITFTALMDALGKAGRVDDALELLDEMKERGV 250

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P VVTYN+LI GF    D  EA  LL EM   G +PDVVT++ ++  L K  ++DEA +
Sbjct: 251 KPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQ 310

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+ M   G  P+T T++TL++G    G +N A  LF  M+S GC   V +Y
Sbjct: 311 VLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTY 362



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 161/338 (47%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +F  M      P   T  +L++G L K       + L + +   G  PD+ TY+ 
Sbjct: 131 SEAFTLFAEMRERGCVPDTFTYNSLIYG-LGKVGRSQKAMELLEEMERHGCPPDVMTYSS 189

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI    K G     F +   + R    PD++ FT+L+  L    R+ +A  L  ++K  G
Sbjct: 190 LITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERG 249

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
            KP V+TY+ LI G  + G  + A NL +EM     K  VV                   
Sbjct: 250 VKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEAC 309

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                     C P+T+TY T+I+GL K G ++ A  LF +MK K  NPDVVTY++LI   
Sbjct: 310 QVLKKMEKEGCPPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITAL 369

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             A     A  L  EM   G+QPD+ T+  I+  L K G++D+A RL   M  +G++P+ 
Sbjct: 370 GKAARVESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDV 429

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++  ++     GR   A+++F  M+  G    V +Y
Sbjct: 430 ITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPDVATY 467



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/301 (33%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  M   R   P   +F  L   L K    D  L L   +   G+ P + TYN L
Sbjct: 202 KAFKLFQEM-KRRGRKPDSITFTALMDALGKAGRVDDALELLDEMKERGVKPGVVTYNAL 260

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  F K+G +   + +L  + R+   PD V ++ LI GL   S++ EA  +  K++  GC
Sbjct: 261 IAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGC 320

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ ITY+TLINGL + G    A  LF+ M +        C P+ VTY+T+I  L K   
Sbjct: 321 PPDTITYNTLINGLGKAGLLNDAGRLFDRMKSKG------CNPDVVTYSTLITALGKAAR 374

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A  LF +M+   I PD+ TY S+I     A   ++A+ L  EM  +G+ PDV+T+N 
Sbjct: 375 VESACVLFEEMESVGIQPDLFTYCSIITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNA 434

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++ L + G+  EA ++ E M   G+ P+ +T+  L+ G   T  V+ A  L   +   G
Sbjct: 435 FLNSLGRGGRFKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQG 494

Query: 389 C 389
           C
Sbjct: 495 C 495



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 140/257 (54%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P++ TYN L+N   K G+     ++   +  + +TPD V+++ LI  L    +   A  +
Sbjct: 7   PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +++A GCKPN+ TY+TL++ L + G    AL L  EM + NG     C P+  TY  +
Sbjct: 67  VAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRD-NG-----CVPDVRTYNCL 120

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I  L K G + +A  LF +M+++   PD  TYNSLI+G        +A  LL EM   G 
Sbjct: 121 ISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERHGC 180

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDV+T++ ++  L K+G+  +A +L + M  RG  P++ TF+ LMD     GRV+ A E
Sbjct: 181 PPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALE 240

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M+  G K  V +Y
Sbjct: 241 LLDEMKERGVKPGVVTY 257



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ + D M       P + +++ L   L K    D    + K++   G  PD  TYN L
Sbjct: 272 EAYNLLDEM-KRNGCKPDVVTYSCLITGLIKASQLDEACQVLKKMEKEGCPPDTITYNTL 330

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   K G ++    +  R+      PD V +++LI  L   +R+  A  LF ++++ G 
Sbjct: 331 INGLGKAGLLNDAGRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGI 390

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P++ TY ++I  L + G    A  LF EM  G G       P+ +TY   ++ L + G 
Sbjct: 391 QPDLFTYCSIITVLGKAGQVDDADRLFSEM-RGKG-----LSPDVITYNAFLNSLGRGGR 444

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A+++F  MK+  + PDV TY++L+ G     + ++A  LL E+++QG   D + F+ 
Sbjct: 445 FKEARKIFEDMKESGLLPDVATYDALLLGLSKTKEVDDACGLLKELIEQGCAFDSLKFDE 504

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++ L   G +DEA  LL+    +G+ P  S+++ L+D     GRV+ A      ++  G
Sbjct: 505 CLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQG 564

Query: 389 CKHTVFSY 396
            K  + SY
Sbjct: 565 GKPDIVSY 572



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 84/224 (37%), Positives = 115/224 (51%), Gaps = 8/224 (3%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +P+ V + SL+  L    +  EA  LF +LKA    P+V++YS LIN L R G    AL 
Sbjct: 6   SPNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALE 65

Query: 234 LFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +  EM A G       CKPN  TY T++D L K G  D+A  L  +M+D    PDV TYN
Sbjct: 66  VVAEMQAKG-------CKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYN 118

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            LI     A   +EA  L  EM ++G  PD  T+N ++  L K G+  +A  LLE M   
Sbjct: 119 CLISTLGKAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVGRSQKAMELLEEMERH 178

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G  P+  T+S+L+ G    G    A +LF  M+  G K    ++
Sbjct: 179 GCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKPDSITF 222



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 135/278 (48%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +FD M   +   P + +++ L   L K    ++   LF+ + S G+ PDL+TY  
Sbjct: 341 NDAGRLFDRM-KSKGCNPDVVTYSTLITALGKAARVESACVLFEEMESVGIQPDLFTYCS 399

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I    K G+V     +   +     +PD + + + +  L    R  EA  +F  +K  G
Sbjct: 400 IITVLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESG 459

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TY  L+ GL +T     A  L +E+          C  +++ +   ++ L   G
Sbjct: 460 LLPDVATYDALLLGLSKTKEVDDACGLLKELIEQG------CAFDSLKFDECLEILTSWG 513

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A EL      K + P   +YN+LI     A   +EA   L ++ +QG +PD+V+++
Sbjct: 514 NVDEAHELLQFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYS 573

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++  L + G++D A  LLE M  RG+  +  ++S L+
Sbjct: 574 SLISALGQTGQIDTAFELLEEMSKRGLKLSPRSYSNLV 611



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 11/138 (7%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E  C FD +            F+     L    + D    L +  NS GL+P   +YN L
Sbjct: 492 EQGCAFDSL-----------KFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNAL 540

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+   K GRVS  F  L  +      PD V+++SLI  L    +I  A  L  ++   G 
Sbjct: 541 IDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEMSKRGL 600

Query: 209 KPNVITYSTLINGLCRTG 226
           K +  +YS L+  L   G
Sbjct: 601 KLSPRSYSNLVRKLQDWG 618


>gi|357507167|ref|XP_003623872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498887|gb|AES80090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 539

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 117/289 (40%), Positives = 173/289 (59%), Gaps = 8/289 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           FN L   L K K Y+ V+SL+  L S   + P L T++ILIN F ++G++   F +LG I
Sbjct: 72  FNKLLSTLIKLKRYNAVVSLYTILQSKPTIKPSLITFSILINAFAQLGQMGFAFSLLGNI 131

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L+  F  D    T+L+KGLC + R++EA +L  +    G + + + Y T+INGLC+ G T
Sbjct: 132 LKMGFQIDVRILTTLMKGLCLKGRVLEAVSLLHEYVDRGFRFDEVCYGTIINGLCKIGKT 191

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ +F +M        +   PN + Y T+IDGLCK+G VD+A  L  +M +  I  DV
Sbjct: 192 RDAIQMFPKMKK------IRVYPNLIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDV 245

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            +YNS+IHGFC    +  A  LL EM+ +G V PDV TFN+++D LCK G++ EA  ++ 
Sbjct: 246 YSYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVA 305

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +MI RG  P+  +++ LM+G+CL+G V  AK++F  M        V SY
Sbjct: 306 VMIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISY 354



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 103/314 (32%), Positives = 168/314 (53%), Gaps = 18/314 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  M  +R  P  L  +N +   L K    D    L   +   G+  D+Y+YN +
Sbjct: 193 DAIQMFPKMKKIRVYPN-LIMYNTVIDGLCKQGLVDEACGLCTEMVENGIELDVYSYNSM 251

Query: 149 INCFCKMGRVSHGFVVLGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I+ FC +GR      +L   ++R    PD   F  LI GLC   R+ EA  +   +   G
Sbjct: 252 IHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAVMIKRG 311

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP++++Y+ L+NG C +G    A  +F++M            PN ++Y T+I+G CK  
Sbjct: 312 WKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTAL------PNVISYCTLINGYCKVR 365

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN----DWNEANCLLIEMMDQGVQP-D 322
            VD+A  L  +M +KN+ PD VTYN L+ G   +     +W+     L+E M    QP D
Sbjct: 366 MVDEAMVLLTEMHNKNLVPDTVTYNCLLDGLSKSGRSLYEWD-----LVEAMRASGQPAD 420

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           ++T+NV++D+  K+ K D+A  L + +I  G++PN  T++ L+DG C +GR+ +AKE+F 
Sbjct: 421 LITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQ 480

Query: 383 SMESMGCKHTVFSY 396
            + + GC+  + +Y
Sbjct: 481 LLSAKGCQPNIRTY 494



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 149/277 (53%), Gaps = 7/277 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           S+N +         +   + L   +   G ++PD+YT+NILI+  CK+GRVS  + V+  
Sbjct: 247 SYNSMIHGFCSVGRFQAAVKLLDEMVVRGKVYPDVYTFNILIDGLCKLGRVSEAYNVVAV 306

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +++  + PD V++ +L+ G C    + EA  +F K+      PNVI+Y TLING C+   
Sbjct: 307 MIKRGWKPDIVSYNALMNGYCLSGSVGEAKQVFDKMVERTALPNVISYCTLINGYCKVRM 366

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ L  EM N N        P+TVTY  ++DGL K G      +L   M+      D
Sbjct: 367 VDEAMVLLTEMHNKN------LVPDTVTYNCLLDGLSKSGRSLYEWDLVEAMRASGQPAD 420

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           ++TYN L+  +     +++A  L   +++ G+ P++ T+N+++D LCK+G++  A  + +
Sbjct: 421 LITYNVLLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQ 480

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L+  +G  PN  T++ ++ G C  G ++ A+ L   M
Sbjct: 481 LLSAKGCQPNIRTYNIMIHGLCKEGFLDEAEALLYKM 517



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 7/209 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  R + P + S+  L     K +  D  + L   +++  L PD  TYN L
Sbjct: 334 EAKQVFDKMVE-RTALPNVISYCTLINGYCKVRMVDEAMVLLTEMHNKNLVPDTVTYNCL 392

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++   K GR  + + ++  +  S    D + +  L+       +  +A ALF  +   G 
Sbjct: 393 LDGLSKSGRSLYEWDLVEAMRASGQPADLITYNVLLDDYFKHEKFDKALALFQHIIEIGI 452

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+ TY+ L++GLC++G    A  +F+ ++         C+PN  TY  +I GLCKEGF
Sbjct: 453 SPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKG------CQPNIRTYNIMIHGLCKEGF 506

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +D+A+ L  +M + N  P+ +T+++++  
Sbjct: 507 LDEAEALLYKMVNNNYLPNYITFDTIVRA 535



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 85/176 (48%), Gaps = 7/176 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M N    P  +T +N L   L+K+        L + + ++G   DL TYN+
Sbjct: 368 DEAMVLLTEMHNKNLVPDTVT-YNCLLDGLSKSGRSLYEWDLVEAMRASGQPADLITYNV 426

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ + K  +      +   I+    +P+   +  L+ GLC   R+  A  +F  L A G
Sbjct: 427 LLDDYFKHEKFDKALALFQHIIEIGISPNIRTYNILLDGLCKSGRLKYAKEIFQLLSAKG 486

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           C+PN+ TY+ +I+GLC+ G    A  L  +M N N        PN +T+ TI+  +
Sbjct: 487 CQPNIRTYNIMIHGLCKEGFLDEAEALLYKMVNNN------YLPNYITFDTIVRAI 536


>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
          Length = 548

 Score =  214 bits (546), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 118/356 (33%), Positives = 191/356 (53%), Gaps = 33/356 (9%)

Query: 70  LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
           L+ER   +   DI     N+A  +F  M+  RP P  +  FN L   + K K YD V+SL
Sbjct: 52  LRERLSKTRLRDIKL---NDAIDLFSDMVKSRPFPS-IVDFNRLLSAIVKLKKYDVVISL 107

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            K++   G+  DLYT+NI+INCFC   +VS    +LG++L+  + PD V   SL+ G C 
Sbjct: 108 GKKMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCR 167

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV- 248
            +R+ +A +L  K+   G KP+++ Y+ +I+ LC+T     A + F+E+     +  VV 
Sbjct: 168 RNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVT 227

Query: 249 ----------------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                                         PN +TY+ ++D   K G V +AKELF +M 
Sbjct: 228 YTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV 287

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +I+PD+VTY+SL++G C  +  +EAN +   M+ +G   DVV++N +++  CK  +++
Sbjct: 288 RMSIDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVE 347

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +L   M  RG+  NT T++TL+ GF   G V+ A+E F  M+  G    +++Y
Sbjct: 348 DGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTY 403



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 167/336 (49%), Gaps = 42/336 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+ +    P + ++N +   L KTK  +     FK +   G+ P++ TY  
Sbjct: 172 SDAVSLVDKMVEI-GYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTA 230

Query: 148 LINCFCKMGRVSHG-------------------------FVVLGRIL----------RSC 172
           L+N  C   R S                           FV  G++L          R  
Sbjct: 231 LVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMS 290

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD V ++SL+ GLC   RI EA  +F  + + GC  +V++Y+TLING C+       +
Sbjct: 291 IDPDIVTYSSLVNGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGM 350

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF EM+    + G+V   NTVTY T+I G  + G VDKA+E F QM    I+PD+ TYN
Sbjct: 351 KLFREMS----QRGLV--SNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            L+ G C   +  +A  +  +M  + +  D+VT+  ++  +CK GK++EA  L   + L+
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G+ P+  T++T+M G C  G ++  + L+  M+  G
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVEALYTKMKQEG 500


>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 504

 Score =  214 bits (545), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 173/309 (55%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M++ RP P  +  F  L   +AK K +D V+SLF+++   G+ P LYT NI
Sbjct: 64  NEALDLFTRMVHSRPLPS-IVDFTRLLSVIAKMKRFDVVISLFEQMQILGISPVLYTCNI 122

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++NC C+  +       LG++++  F PD V FTSL+ G C  +RI +A ALF ++   G
Sbjct: 123 VMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIEDALALFDQIVGMG 182

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PNV+TY+TLI+ LC+  H   A+ +F +M + NG      +PN VTY +++ GLC+ G
Sbjct: 183 FRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGD-NG-----IRPNVVTYNSLVSGLCEIG 236

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A  L   M  + I P+V+T+ +LI  F       EA  L   M+   V PDV T+ 
Sbjct: 237 RWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYT 296

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LC  G++DEA ++  LM   G  PN  T++TL+ GFC + RV    ++F  M   
Sbjct: 297 ALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQK 356

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 357 GLVANTITY 365



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 166/308 (53%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD ++ M   P  +T +  L  CL K +H +  + +F ++   G+ P++ TYN L
Sbjct: 170 DALALFDQIVGMGFRPNVVT-YTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSL 228

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C++GR S    +L  +++    P+ + FT+LI       +IMEA  L+  +     
Sbjct: 229 VSGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSV 288

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V TY+ LINGLC  G    A  +F  M + NG +     PN VTYTT+I G CK   
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMES-NGYY-----PNEVTYTTLIHGFCKSKR 342

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   ++F +M  K +  + +TY  LI G+C     + A  +  +M  +   PD+ T+NV
Sbjct: 343 VEDGTKIFYEMSQKGLVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAPPDIRTYNV 402

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC NG +++A  + + M  R ++ N  T++ ++ G C  G+V  A +LF S+ S G
Sbjct: 403 LLDGLCYNGYVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKG 462

Query: 389 CKHTVFSY 396
            K  V +Y
Sbjct: 463 MKPNVITY 470



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/273 (28%), Positives = 132/273 (48%), Gaps = 8/273 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ + D M   R   P + +F  L     K         L+K +    ++PD++TY  
Sbjct: 240 DAAWLLRDMM--KRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMIQMSVYPDVFTYTA 297

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  GR+     +   +  + + P+ V +T+LI G C   R+ +   +F ++   G
Sbjct: 298 LINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTKIFYEMSQKG 357

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N ITY+ LI G C  G   VA  +F +M +          P+  TY  ++DGLC  G
Sbjct: 358 LVANTITYTVLIQGYCLVGRPDVAQEVFNQMGSRRAP------PDIRTYNVLLDGLCYNG 411

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           +V+KA  +F  M+ + ++ ++VTY  +I G C      +A  L   +  +G++P+V+T+ 
Sbjct: 412 YVEKALMIFKYMRKREMDINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYT 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
            ++   C+ G + EA  L + M   G  PN S 
Sbjct: 472 TMISGFCRRGFIHEADALFKKMKEDGFLPNESV 504



 Score = 71.6 bits (174), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 1/133 (0%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG      P+ A  +F+ M   R +PP + ++N+L   L    + +  L +FK +    +
Sbjct: 370 QGYCLVGRPDVAQEVFNQM-GSRRAPPDIRTYNVLLDGLCYNGYVEKALMIFKYMRKREM 428

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             ++ TY I+I   CK+G+V   F +   +      P+ + +T++I G C    I EA A
Sbjct: 429 DINIVTYTIIIQGMCKVGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGFIHEADA 488

Query: 199 LFTKLKAFGCKPN 211
           LF K+K  G  PN
Sbjct: 489 LFKKMKEDGFLPN 501


>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
 gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  214 bits (545), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 113/260 (43%), Positives = 159/260 (61%), Gaps = 6/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P+  T NILINCFC++ RV  GF VL + ++    P  V FT+LI GL    +  +A
Sbjct: 5   GLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGKFAQA 64

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             LF  + A GC+P+  TY+T+INGLC+ G T +A  LF++M          C+ N VTY
Sbjct: 65  VELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAG------CQLNVVTY 118

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           +T+I  LCK   V++A ++F  MK K+I+P + TY SLI G C  + W EA+ LL EM  
Sbjct: 119 STLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTS 178

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
             + P+VVTFNV++D  CK GK+  A  +L+ M   GV P+  T+++LM G+ +   V  
Sbjct: 179 LNIMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVE 238

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A++LF  M + GCK  VFSY
Sbjct: 239 ARKLFDVMITKGCKPDVFSY 258



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM     SP   T  +L+ G L     +    +L   + S  + P++ T+N+
Sbjct: 132 NEALDIFSYMKAKDISPTIFTYTSLIQG-LCNFSRWKEASALLNEMTSLNIMPNVVTFNV 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G+V     VL  +      PD V + SL+ G    + ++EA  LF  +   G
Sbjct: 191 LVDTFCKEGKVLAAEGVLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKG 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+V +YS LING C+      A  LF EM +          PN V+Y T+I GLC+ G
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGST------PNNVSYNTLIHGLCQLG 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A++LF  M      P++ TY  L+ GFC      +A  L   M    ++P++V +N
Sbjct: 305 RLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYN 364

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ +CK+G + +A  L   + + G+ PN   ++T+++G C  G ++ A E F +ME  
Sbjct: 365 ILVNAMCKSGNLKDARELFSELFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDD 424

Query: 388 GCKHTVFSY 396
           GC    FSY
Sbjct: 425 GCPPDEFSY 433



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L K   +   + LF  + + G  PD YTY  +IN  CK+G  +    +
Sbjct: 43  PTIVTFTTLINGLGKVGKFAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGL 102

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++  +    + V +++LI  LC   R+ EA  +F+ +KA    P + TY++LI GLC 
Sbjct: 103 FKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCN 162

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L  EM + N        PN VT+  ++D  CKEG V  A+ +   M +  +
Sbjct: 163 FSRWKEASALLNEMTSLN------IMPNVVTFNVLVDTFCKEGKVLAAEGVLKTMTEMGV 216

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYNSL++G+    +  EA  L   M+ +G +PDV +++++++  CK  ++DEA +
Sbjct: 217 EPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQ 276

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   MI +G  PN  +++TL+ G C  GR+  A++LF +M + G    +++Y
Sbjct: 277 LFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTY 328



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+  R   P   ++  +   L K         LFK++   G   ++ TY+ L
Sbjct: 63  QAVELFDDMV-ARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTL 121

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK  RV+    +   +     +P    +TSLI+GLC  SR  EA+AL  ++ +   
Sbjct: 122 IHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNI 181

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+T++ L++  C+ G  + A  + + M     + GV  +P+ VTY +++ G      
Sbjct: 182 MPNVVTFNVLVDTFCKEGKVLAAEGVLKTMT----EMGV--EPDVVTYNSLMYGYSMWTE 235

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A++LF  M  K   PDV +Y+ LI+G+C A   +EA  L  EM+ QG  P+ V++N 
Sbjct: 236 VVEARKLFDVMITKGCKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNT 295

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+ G++ EA  L + M   G  PN  T++ L+DGFC  G +  A  LF +M+S  
Sbjct: 296 LIHGLCQLGRLREAQDLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTY 355

Query: 389 CKHTVFSY 396
            K  +  Y
Sbjct: 356 LKPNLVMY 363



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 127/262 (48%), Gaps = 30/262 (11%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +   M  M   P  +T  +L++G    T+  +    LF  + + G  PD+++Y+ILIN +
Sbjct: 207 VLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEA-RKLFDVMITKGCKPDVFSYSILINGY 265

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  R+     +   ++    TP+ V++ +LI GLC   R+ EA  LF  +   G  PN+
Sbjct: 266 CKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNL 325

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMAN--------------------GNGK-------- 244
            TY+ L++G C+ G+   A  LF  M +                    GN K        
Sbjct: 326 YTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDARELFSE 385

Query: 245 -FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
            F +  +PN   YTTII+GLCKEG +D+A E F  M+D    PD  +YN +I GF    D
Sbjct: 386 LFVIGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPDEFSYNVIIRGFLQHKD 445

Query: 304 WNEANCLLIEMMDQGVQPDVVT 325
            + A  L+ EM D+G   D  T
Sbjct: 446 ESRAVHLIGEMRDRGFITDAGT 467



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 64/118 (54%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M+   ++P+  T N LI+ FC     +    +L + +  G+QP +VTF  +++ L K GK
Sbjct: 1   MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +A  L + M+ RG  P+  T++T+++G C  G    A  LF  ME  GC+  V +Y
Sbjct: 61  FAQAVELFDDMVARGCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTY 118


>gi|358347568|ref|XP_003637828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503763|gb|AES84966.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 529

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 114/291 (39%), Positives = 166/291 (57%), Gaps = 6/291 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +L+ +   P +  F  + G L K  HY  V+SL +++   GL  +L T +ILINC+ ++G
Sbjct: 2   LLHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLG 61

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           + +  F V   IL+  +  DA+ FT+LIKGLC +  I +A     K+ A G K N ++Y 
Sbjct: 62  QNALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYG 121

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLINGLC+ G T  AL     +       G + +P+ V Y TIIDGLCK+  V+ A  L+
Sbjct: 122 TLINGLCKVGQTRAALEFLRRID------GKLVQPDVVMYNTIIDGLCKDKLVNDAFNLY 175

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  K I P VVTYN+LI G C      +A  LL +M+ + + P V TF++++D  CK 
Sbjct: 176 FEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKE 235

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           GKM EA  +  +M+   V PN  T+++LMDG  L   V  AK +F +M  M
Sbjct: 236 GKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKM 286



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 155/299 (51%), Gaps = 20/299 (6%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K K  +   +L+  + +  + P + TYN LI   C M ++     +
Sbjct: 150 PDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKRICPSVVTYNTLICGLCIMAQLKDAIGL 209

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING--- 221
           L +++     P    F+ LI   C E ++ EA  +F  +     KPN++TY++L++G   
Sbjct: 210 LHKMILEDINPTVYTFSILIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHL 269

Query: 222 --LCRTGHTIV---------ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
             + +   +I          A+NLFEEM      F  +  P+ V Y ++IDGLCK G   
Sbjct: 270 VNVVKKAKSIFNTMIKMVDEAMNLFEEM-----HFKQI-YPDMVIYNSLIDGLCKSGRTP 323

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
            A +   +M  +   PD+ TYNSL+   C     ++A  LL ++ DQG+QP V T+N+++
Sbjct: 324 YALKFIGEMHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILI 383

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           + LCK+G++ +A ++ E ++++G N +  T++ ++ GFC  G  +    +   M+  GC
Sbjct: 384 NGLCKSGRLKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGC 442



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 151/303 (49%), Gaps = 20/303 (6%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L   L K       L   +R++   + PD+  YN +I+  CK   V+  F +   
Sbjct: 118 VSYGTLINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFE 177

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P  V + +LI GLC  +++ +A  L  K+      P V T+S LI+  C+ G 
Sbjct: 178 MVAKRICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGK 237

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG-----LCKEG---------FVDKAK 273
              A N+F  M   +       KPN VTY +++DG     + K+           VD+A 
Sbjct: 238 MKEAKNVFAVMMKED------VKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMVDEAM 291

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            LF +M  K I PD+V YNSLI G C +     A   + EM  +G  PD+ T+N ++D L
Sbjct: 292 NLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEMHYRGQPPDIFTYNSLLDAL 351

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CKN  +D+A  LL  +  +G+ P+  T++ L++G C +GR+  A+++F  +   G    V
Sbjct: 352 CKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFEDLLVKGYNTDV 411

Query: 394 FSY 396
           ++Y
Sbjct: 412 YTY 414



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 145/285 (50%), Gaps = 21/285 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M+  R  P  +T +N L   L         + L  ++    + P +YT++I
Sbjct: 169 NDAFNLYFEMVAKRICPSVVT-YNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSI 227

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG-----LCAESR---------I 193
           LI+ FCK G++     V   +++    P+ V + SL+ G     +  +++         +
Sbjct: 228 LIDAFCKEGKMKEAKNVFAVMMKEDVKPNIVTYNSLMDGHHLVNVVKKAKSIFNTMIKMV 287

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            EA  LF ++      P+++ Y++LI+GLC++G T  AL    EM +  G+      P+ 
Sbjct: 288 DEAMNLFEEMHFKQIYPDMVIYNSLIDGLCKSGRTPYALKFIGEM-HYRGQ-----PPDI 341

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            TY +++D LCK   VDKA EL  ++KD+ I P V TYN LI+G C +    +A  +  +
Sbjct: 342 FTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGRLKDAEKVFED 401

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           ++ +G   DV T+N ++   CK G  DE   ++  M   G +P+ 
Sbjct: 402 LLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDA 446



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 66/144 (45%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R  PP + ++N L   L K  H D  + L  +L   G+ P + TYNILIN  CK GR
Sbjct: 332 MHYRGQPPDIFTYNSLLDALCKNYHVDKAIELLTKLKDQGIQPSVCTYNILINGLCKSGR 391

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     V   +L   +  D   + ++IKG C +    E  A+ +K+K  GC P+      
Sbjct: 392 LKDAEKVFEDLLVKGYNTDVYTYNAMIKGFCKKGLFDETLAMVSKMKDSGCSPDAKNCEI 451

Query: 218 LINGLCRTGHTIVALNLFEEMANG 241
           +I  L   G    A    E +  G
Sbjct: 452 IIRSLFDKGENDKAGKFREMIVRG 475



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 96/258 (37%), Gaps = 78/258 (30%)

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           P++  +  ++  L +  H  + ++L  +M  NG          N VT + +I+   + G 
Sbjct: 10  PSIFEFGKILGSLVKANHYSIVVSLHRQMEFNG-------LASNLVTLSILINCYSQLGQ 62

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG---------- 318
              +  +F  +  K    D +T+ +LI G C   + ++A     +++ QG          
Sbjct: 63  NALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSYGT 122

Query: 319 -------------------------VQPDVVTFNVIMDELCKN----------------- 336
                                    VQPDVV +N I+D LCK+                 
Sbjct: 123 LINGLCKVGQTRAALEFLRRIDGKLVQPDVVMYNTIIDGLCKDKLVNDAFNLYFEMVAKR 182

Query: 337 ------------------GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
                              ++ +A  LL  MIL  +NP   TFS L+D FC  G++  AK
Sbjct: 183 ICPSVVTYNTLICGLCIMAQLKDAIGLLHKMILEDINPTVYTFSILIDAFCKEGKMKEAK 242

Query: 379 ELFVSMESMGCKHTVFSY 396
            +F  M     K  + +Y
Sbjct: 243 NVFAVMMKEDVKPNIVTY 260



 Score = 40.8 bits (94), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 25/118 (21%), Positives = 55/118 (46%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           +  KN  P +  +  ++     AN ++    L  +M   G+  ++VT +++++   + G+
Sbjct: 3   LHHKNPTPSIFEFGKILGSLVKANHYSIVVSLHRQMEFNGLASNLVTLSILINCYSQLGQ 62

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +  +   ++ +G   +  TF+TL+ G CL G ++ A      + + G K    SY
Sbjct: 63  NALSFSVFANILKKGYGSDAITFTTLIKGLCLKGEIHKALHFHDKVVAQGFKLNQVSY 120


>gi|357442883|ref|XP_003591719.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357501105|ref|XP_003620841.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355480767|gb|AES61970.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495856|gb|AES77059.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 524

 Score =  213 bits (543), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 123/366 (33%), Positives = 182/366 (49%), Gaps = 61/366 (16%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH--YDTVLSLFKRLNSTGLFPDL 142
           +  ++A   F  ML M PSP  +  FN + G L K+ +  Y   +SL+ RL    + P +
Sbjct: 25  VDVHDAISSFYRMLRMNPSPS-IIEFNKILGSLVKSNNNNYPIAISLYHRLQLNAITPSI 83

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T+N +INC+C +G +   F VL +IL+  + PD +  T+LIKGLC   ++ EA      
Sbjct: 84  VTFNTVINCYCHLGEMDFAFSVLAKILKMGYHPDTITLTTLIKGLCLNGKVHEALHFHDH 143

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           + A G + N ++Y  LINGLC+ G T  AL +  ++       G +   N V Y+TIID 
Sbjct: 144 VIARGFRLNEVSYGILINGLCKMGETRAALQVLRKID------GKLVNTNVVMYSTIIDS 197

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCKE  V +A EL+ QM  K ++PDVVT+++LI+GFC    + EA  L  EM+   + PD
Sbjct: 198 LCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMVLTNINPD 257

Query: 323 VVTFNVIMDELCKNGK-------------------------------------------- 338
           V TFN+++D LCK G                                             
Sbjct: 258 VCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDVHSYTIII 317

Query: 339 --------MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
                   +DEA  L   M  +G+ P+  T+S+L+DG C + R++HA EL   M + G  
Sbjct: 318 KRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQMHARGQP 377

Query: 391 HTVFSY 396
             V +Y
Sbjct: 378 ADVITY 383



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 29/307 (9%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ +   L K K       L+ ++    + PD+ T++ LI  FC +G+    F +   ++
Sbjct: 191 YSTIIDSLCKEKLVTEAYELYSQMIVKKVSPDVVTFSALIYGFCMVGQFKEAFGLFHEMV 250

Query: 170 RSCFTPDAVAFTSLIKGLCAE-----------------SRIMEAAALFTKLKAFGCKPNV 212
            +   PD   F  L+  LC E                 +++ +A  +F  +      P+V
Sbjct: 251 LTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGKRRVTPDV 310

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFV 269
            +Y+ +I  LC+      AL+LF EM          CK   P+ VTY+++IDGLCK   +
Sbjct: 311 HSYTIIIKRLCKIKMVDEALSLFNEMR---------CKGITPDKVTYSSLIDGLCKSERI 361

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A EL  QM  +    DV+TY S +H  C  +  ++A  L+ ++ DQG+QP++ T+N++
Sbjct: 362 SHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNIL 421

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK G+ + A  + + ++++G      T++ +++G CL G  + A  L   ME  GC
Sbjct: 422 IDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGC 481

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 482 TPDVVTY 488



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 162/321 (50%), Gaps = 32/321 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA+ ++  M+  + SP  +T   L++G C+     +     LF  +  T + PD+ T+NI
Sbjct: 206 EAYELYSQMIVKKVSPDVVTFSALIYGFCMVG--QFKEAFGLFHEMVLTNINPDVCTFNI 263

Query: 148 LINCFCKMG--------------------RVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           L++  CK G                    +  H F ++G+      TPD  ++T +IK L
Sbjct: 264 LVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFNIIGK---RRVTPDVHSYTIIIKRL 320

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    + EA +LF +++  G  P+ +TYS+LI+GLC++     A  L ++M +  G+   
Sbjct: 321 CKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSERISHAWELLDQM-HARGQ--- 376

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               + +TYT+ +  LCK   VDKA  L  ++KD+ I P++ TYN LI G C    +  A
Sbjct: 377 --PADVITYTSFLHALCKNHQVDKAVALVKKIKDQGIQPNINTYNILIDGLCKEGRFENA 434

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +  +++ +G +  V T+N++++ LC  G  DEA  LLE M   G  P+  T+ T++  
Sbjct: 435 QVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLLEKMEDNGCTPDVVTYETIIRA 494

Query: 368 FCLTGRVNHAKELFVSMESMG 388
                  + A++L   M + G
Sbjct: 495 LFKNDENHKAEKLLREMIARG 515



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 143/283 (50%), Gaps = 24/283 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK---TKHYDTVLS-LFKRLNSTG------- 137
           EAF +F  M+ +    P + +FN+L   L K   TK    VL+ + K +N          
Sbjct: 241 EAFGLFHEMV-LTNINPDVCTFNILVDALCKEGSTKETKNVLAVMMKEVNQVNKAKHVFN 299

Query: 138 ------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
                 + PD+++Y I+I   CK+  V     +   +     TPD V ++SLI GLC   
Sbjct: 300 IIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSSLIDGLCKSE 359

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           RI  A  L  ++ A G   +VITY++ ++ LC+      A+ L +++ +         +P
Sbjct: 360 RISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQG------IQP 413

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  TY  +IDGLCKEG  + A+ +F  +  K     V TYN +I+G C    ++EA  LL
Sbjct: 414 NINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTVWTYNIMINGLCLEGLFDEAMTLL 473

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
            +M D G  PDVVT+  I+  L KN +  +A +LL  MI RG+
Sbjct: 474 EKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGL 516



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 79/237 (33%), Positives = 128/237 (54%), Gaps = 7/237 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +F+ ++  R   P + S+ ++   L K K  D  LSLF  +   G+ PD  TY+ 
Sbjct: 292 NKAKHVFN-IIGKRRVTPDVHSYTIIIKRLCKIKMVDEALSLFNEMRCKGITPDKVTYSS 350

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  R+SH + +L ++       D + +TS +  LC   ++ +A AL  K+K  G
Sbjct: 351 LIDGLCKSERISHAWELLDQMHARGQPADVITYTSFLHALCKNHQVDKAVALVKKIKDQG 410

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN+ TY+ LI+GLC+ G    A  +F+++     K  V       TY  +I+GLC EG
Sbjct: 411 IQPNINTYNILIDGLCKEGRFENAQVIFQDLLIKGYKVTV------WTYNIMINGLCLEG 464

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
             D+A  L  +M+D    PDVVTY ++I      ++ ++A  LL EM+ +G+  + V
Sbjct: 465 LFDEAMTLLEKMEDNGCTPDVVTYETIIRALFKNDENHKAEKLLREMIARGLLEEKV 521


>gi|356532720|ref|XP_003534919.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g22470, mitochondrial-like [Glycine max]
          Length = 468

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 110/288 (38%), Positives = 177/288 (61%), Gaps = 9/288 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ML +R + P +  FN + G L K K+Y TV+SL K+++  G+  +L T +ILINCFC +G
Sbjct: 1   MLLVRHTSP-IIEFNKILGSLVKLKYYLTVISLSKQMDVKGIEQNLVTLSILINCFCHLG 59

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +++  F +LG+IL+  + P+ + +T+L+KGLC +  + +      K+ A   + N ++Y 
Sbjct: 60  QMAFSFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYG 119

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TL+NGLC+TG T  A+ L   + + +       +PN V Y+ IIDGLCK+  V++A +L+
Sbjct: 120 TLLNGLCKTGETRCAIKLLRMIEDRS------TRPNVVMYSAIIDGLCKDKLVNEAYDLY 173

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  + I P+V+TYN+LI  FC A     A  LL EM+ + + PDV TF++++D LCK 
Sbjct: 174 SEMDAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKE 233

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           GK   A ++   M+  GVNPN  +++ +++G C   RV+ A  L   M
Sbjct: 234 GK--NAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREM 279



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 154/293 (52%), Gaps = 8/293 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R + P +  ++ +   L K K  +    L+  +++  +FP++ TYN LI  FC  G
Sbjct: 140 MIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFPNVITYNTLICAFCLAG 199

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  ++     PD   F+ LI  LC E +   A  +F  +   G  PNV +Y+
Sbjct: 200 QLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGK--NAKQIFHAMVQMGVNPNVYSYN 257

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            +INGLC+      A+NL  EM + N        P+TVTY ++IDGLCK G +  A  L 
Sbjct: 258 IMINGLCKCKRVDEAMNLLREMLHKN------MVPDTVTYNSLIDGLCKSGRITSALNLM 311

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  +    DVVTY SL+   C   + ++A  L ++M ++G+QP + T+  ++D LCK 
Sbjct: 312 NEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKG 371

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           G++  A  L + ++++G   +  T++ ++ G C  G  + A  +   ME  GC
Sbjct: 372 GRLKNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGC 424



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 106/334 (31%), Positives = 161/334 (48%), Gaps = 28/334 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  +T   L+ G   K +    +L    ++ +     +  +Y  L+
Sbjct: 64  SFSLLGKILKLGYXPNTITWTTLMKGLCLKGE-VKKLLHFHDKVVAQAFQTNQVSYGTLL 122

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK G       +L  I      P+ V ++++I GLC +  + EA  L++++ A    
Sbjct: 123 NGLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIF 182

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK---------FGVVCK---------- 250
           PNVITY+TLI   C  G  + A +L  EM   N              +CK          
Sbjct: 183 PNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSILIDALCKEGKNAKQIFH 242

Query: 251 --------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                   PN  +Y  +I+GLCK   VD+A  L  +M  KN+ PD VTYNSLI G C + 
Sbjct: 243 AMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSG 302

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
               A  L+ EM  +G   DVVT+  ++D LCKN  +D+A+ L   M  RG+ P   T++
Sbjct: 303 RITSALNLMNEMHHRGQPADVVTYTSLLDALCKNQNLDKATALFMKMKERGIQPTMYTYT 362

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+DG C  GR+ +A+ELF  +   GC   V++Y
Sbjct: 363 ALIDGLCKGGRLKNAQELFQHLLVKGCCIDVWTY 396



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 151/305 (49%), Gaps = 17/305 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+ ++  M + R   P + ++N L              SL   +    + PD+YT++I
Sbjct: 167 NEAYDLYSEM-DAREIFPNVITYNTLICAFCLAGQLMGAFSLLHEMILKNINPDVYTFSI 225

Query: 148 LINCFCKMGR----VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           LI+  CK G+    + H  V +G        P+  ++  +I GLC   R+ EA  L  ++
Sbjct: 226 LIDALCKEGKNAKQIFHAMVQMG------VNPNVYSYNIMINGLCKCKRVDEAMNLLREM 279

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                 P+ +TY++LI+GLC++G    ALNL  EM +  G+       + VTYT+++D L
Sbjct: 280 LHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHH-RGQ-----PADVVTYTSLLDAL 333

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK   +DKA  LF++MK++ I P + TY +LI G C       A  L   ++ +G   DV
Sbjct: 334 CKNQNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHLLVKGCCIDV 393

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+ V++  LCK G  DEA  +   M   G  PN  TF  ++         + A++L   
Sbjct: 394 WTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEIIIRSLFEKDENDKAEKLLHE 453

Query: 384 MESMG 388
           M + G
Sbjct: 454 MIAKG 458



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 139/265 (52%), Gaps = 9/265 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   M+ ++   P + +F++L   L K         +F  +   G+ P++Y+YNI+I
Sbjct: 204 AFSLLHEMI-LKNINPDVYTFSILIDALCKEG--KNAKQIFHAMVQMGVNPNVYSYNIMI 260

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK  RV     +L  +L     PD V + SLI GLC   RI  A  L  ++   G  
Sbjct: 261 NGLCKCKRVDEAMNLLREMLHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQP 320

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            +V+TY++L++ LC+  +   A  LF +M     + G+  +P   TYT +IDGLCK G +
Sbjct: 321 ADVVTYTSLLDALCKNQNLDKATALFMKMK----ERGI--QPTMYTYTALIDGLCKGGRL 374

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A+ELF  +  K    DV TY  +I G C    ++EA  +  +M D G  P+ VTF +I
Sbjct: 375 KNAQELFQHLLVKGCCIDVWTYTVMISGLCKEGMFDEALAIKSKMEDNGCIPNAVTFEII 434

Query: 330 MDELCKNGKMDEASRLLELMILRGV 354
           +  L +  + D+A +LL  MI +G+
Sbjct: 435 IRSLFEKDENDKAEKLLHEMIAKGL 459



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/185 (21%), Positives = 88/185 (47%), Gaps = 6/185 (3%)

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           +I ++ ++  L +  + +  ++L ++M           + N VT + +I+  C  G +  
Sbjct: 10  IIEFNKILGSLVKLKYYLTVISLSKQMDVKG------IEQNLVTLSILINCFCHLGQMAF 63

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           +  L  ++      P+ +T+ +L+ G C   +  +      +++ Q  Q + V++  +++
Sbjct: 64  SFSLLGKILKLGYXPNTITWTTLMKGLCLKGEVKKLLHFHDKVVAQAFQTNQVSYGTLLN 123

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LCK G+   A +LL ++  R   PN   +S ++DG C    VN A +L+  M++     
Sbjct: 124 GLCKTGETRCAIKLLRMIEDRSTRPNVVMYSAIIDGLCKDKLVNEAYDLYSEMDAREIFP 183

Query: 392 TVFSY 396
            V +Y
Sbjct: 184 NVITY 188


>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 543

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/308 (36%), Positives = 178/308 (57%), Gaps = 26/308 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  +L   P+PP +  FN + G L K+KHY TVLSL +++   G+ P L+ +   
Sbjct: 59  DAFSLFSRLLRQNPTPPAI-EFNKILGSLVKSKHYHTVLSLSQQMEFEGINPVLFHF--- 114

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
                      H   ++G      + P+ + FT+LIKGLC + +I +A      + A G 
Sbjct: 115 ----------QHPHQLMG------YHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMGF 158

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + + + Y TLI+GLC+ G T  AL+L   + +GN     + +PN V Y+TIIDG+CK+  
Sbjct: 159 QLDQVGYGTLIHGLCKVGETRAALDLLRRV-DGN-----LVQPNVVMYSTIIDGMCKDKH 212

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A +L+ +M  K I+P+VVTY++LI GF       +A  L  +M+ + ++PDV TFN+
Sbjct: 213 VNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNI 272

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK+GKM E   +  +M+ +G+ PN  T+ +LMDG+CL   VN AK +  +M   G
Sbjct: 273 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG 332

Query: 389 CKHTVFSY 396
               + SY
Sbjct: 333 VNPDIQSY 340



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 175/309 (56%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M++   SP  +T   L+ G     +  D +  LF ++    + PD+YT+NI
Sbjct: 214 NDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAI-DLFNKMILENIKPDVYTFNI 272

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G++  G  V   +++    P+ V + SL+ G C    + +A ++   +   G
Sbjct: 273 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRG 332

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ +Y+ LI+G C+      A+NLF+EM + +        P+ VTY ++IDGLCK G
Sbjct: 333 VNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKH------IIPDVVTYNSLIDGLCKLG 386

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +L  +M D+ + PD++TY+S++   C  +  ++A  LL ++ DQG++P++ T+ 
Sbjct: 387 KISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNMYTYT 446

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++++A  + E ++++G N   +T++ ++ GFC  G  + A  L   M+  
Sbjct: 447 ILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDN 506

Query: 388 GCKHTVFSY 396
            C     +Y
Sbjct: 507 SCIPDAVTY 515



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 160/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   + K KH +    L+  + S G+ P++ TY+ LI+ F  +G++     +
Sbjct: 195 PNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGQLKDAIDL 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     PD   F  L+ G C + ++ E   +F  +   G KPNV+TY +L++G C 
Sbjct: 255 FNKMILENIKPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCL 314

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++   M+    + GV   P+  +Y  +IDG CK   VD+A  LF +M  K+I
Sbjct: 315 VKEVNKAKSILYTMS----QRGV--NPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHI 368

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYNSLI G C     + A  L+ EM D+GV PD++T++ I+D LCKN ++D+A  
Sbjct: 369 IPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIA 428

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  +  +G+ PN  T++ L+DG C  GR+  A  +F  +   G   TV +Y
Sbjct: 429 LLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTY 480



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 89/267 (33%), Positives = 138/267 (51%), Gaps = 10/267 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E   +F  M+     P  +T  +L+ G CL K    +   S+   ++  G+ PD+ +YNI
Sbjct: 285 EGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVK--EVNKAKSILYTMSQRGVNPDIQSYNI 342

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK+ +V     +   +      PD V + SLI GLC   +I  A  L  ++   G
Sbjct: 343 LIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRG 402

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITYS++++ LC+      A+ L  ++ +         +PN  TYT +IDGLCK G
Sbjct: 403 VPPDIITYSSILDALCKNHQVDKAIALLTKLKDQG------IRPNMYTYTILIDGLCKGG 456

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  +F  +  K  N  V TY  +IHGFC    ++EA  LL +M D    PD VT+ 
Sbjct: 457 RLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALALLSKMKDNSCIPDAVTYE 516

Query: 328 VIMDELCKNGKMDEASRLLELMILRGV 354
           +I+  L    + D+A +L E MI RG+
Sbjct: 517 IIIRSLFDKDENDKAEKLRE-MITRGL 542



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           + Y+S+   F   ND  +A  L   ++ Q   P  + FN I+  L K+        L + 
Sbjct: 42  IPYSSISTTFHNNNDVVDAFSLFSRLLRQNPTPPAIEFNKILGSLVKSKHYHTVLSLSQQ 101

Query: 349 MILRGVN----------------PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           M   G+N                PNT TF+TL+ G CL G+++ A     ++ +MG
Sbjct: 102 MEFEGINPVLFHFQHPHQLMGYHPNTITFTTLIKGLCLKGQIHQALLFHDNVVAMG 157


>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
 gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
          Length = 636

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 111/294 (37%), Positives = 166/294 (56%), Gaps = 8/294 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +++ L   L KT   D    LF+++      PD+ T+  L++  CK  R+     
Sbjct: 179 PPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 238

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL  +     TP+ + ++SLI GLC   ++ +A  +F ++   G +PNV+TY++LI+G C
Sbjct: 239 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 298

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            T     AL L EEM A G       C P+ +TY T+IDGLCK G   +A  LF  MK K
Sbjct: 299 MTNGVDSALLLMEEMTATG-------CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAK 351

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             NPDV+TY+ LI GFC     + A  L  +M+ Q V PDVVTF+ +++  C  G +D+A
Sbjct: 352 FCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDA 411

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RLLE M+    +P+  T+++L+DGFC  GR+  A+ +   M   GC+  V +Y
Sbjct: 412 ERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTY 465



 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 159/280 (56%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L +    D    L   +   GL PD ++Y+ L+   CK G++     V
Sbjct: 110 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
                     PD VA+++LI GLC   R+ EA  LF K++   C+P+V+T++ L++GLC+
Sbjct: 170 FEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + E M + N      C PN +TY+++IDGLCK G V  A+E+F +M  + I
Sbjct: 230 GDRLQEAQQVLETMEDRN------CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 283

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTYNSLIHGFC  N  + A  L+ EM   G  PD++T+N ++D LCK G+  EA+R
Sbjct: 284 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 343

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L   M  +  NP+  T+S L+ GFC   R++ A+ LF  M
Sbjct: 344 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 383



 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/325 (31%), Positives = 178/325 (54%), Gaps = 41/325 (12%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++ ++   L K        + F ++   G  P+ +TYN+LIN FCK+ +V   +++L 
Sbjct: 7   VITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLK 66

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR-- 224
            +  S   P+ V ++++I G C ++++  A  LF ++   GC PN++TY+TL++GLCR  
Sbjct: 67  EMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGLCRNG 126

Query: 225 ---------------------------------TGHTIVALNLFEEMANGNGKFGVVCKP 251
                                            TG   +AL +FE+ +NG+      C P
Sbjct: 127 LMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGD------CPP 180

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y+T+I GLCK G +D+A +LF +M++ +  PDVVT+ +L+ G C  +   EA  +L
Sbjct: 181 DVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQVL 240

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M D+   P+V+T++ ++D LCK G++ +A  + + MI+RG+ PN  T+++L+ GFC+T
Sbjct: 241 ETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMT 300

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
             V+ A  L   M + GC   + +Y
Sbjct: 301 NGVDSALLLMEEMTATGCLPDIITY 325



 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M +   +P  +T  +L+ G L KT        +FKR+   G+ P++ TYN 
Sbjct: 234 QEAQQVLETMEDRNCTPNVITYSSLIDG-LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 292

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FC    V    +++  +  +   PD + + +LI GLC   R  EA  LF  +KA  
Sbjct: 293 LIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKF 352

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+VITYS LI G C+     +A  LF++M     K  V+  P+ VT++T+++G C  G
Sbjct: 353 CNPDVITYSCLIGGFCKLERIDMARTLFDDML----KQAVL--PDVVTFSTLVEGYCNAG 406

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A+ L  +M   + +PDV TY SL+ GFC      EA  +L  M  +G QP+VVT+ 
Sbjct: 407 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 466

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME-S 386
            ++D  C+ GK   A +LLE M+  GV PN  T+ +L+ GFC TG +  A+++   +E  
Sbjct: 467 ALIDAFCRAGKPTVAYKLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKMLERLERD 526

Query: 387 MGCKHTVFSY 396
             CK  +F+Y
Sbjct: 527 ENCKADMFAY 536



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M       P + +F  L   L K         + + +      P++ TY+ 
Sbjct: 199 DEACKLFEKMRE-NSCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSS 257

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G+V     V  R++     P+ V + SLI G C  + +  A  L  ++ A G
Sbjct: 258 LIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATG 317

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++ITY+TLI+GLC+TG    A  LF +M     KF   C P+ +TY+ +I G CK  
Sbjct: 318 CLPDIITYNTLIDGLCKTGRAPEANRLFGDM---KAKF---CNPDVITYSCLIGGFCKLE 371

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A+ LF  M  + + PDVVT+++L+ G+C A   ++A  LL EM+     PDV T+ 
Sbjct: 372 RIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYT 431

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK G+M EA R+L+ M  RG  PN  T++ L+D FC  G+   A +L   M   
Sbjct: 432 SLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGN 491

Query: 388 GCKHTVFSY 396
           G +  V +Y
Sbjct: 492 GVQPNVITY 500



 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/291 (32%), Positives = 144/291 (49%), Gaps = 41/291 (14%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++ T+ I+I+  CK  R+        ++ +    P+   +  LI G C   ++  A  L 
Sbjct: 6   NVITWTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLL 65

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++K  G  PNV+TYST+I+G CR      A  LF +M   NG     C PN VTY T++
Sbjct: 66  KEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVE-NG-----CMPNLVTYNTLL 119

Query: 261 DGLCKEGFVDKAKELFLQMKDKNIN----------------------------------- 285
            GLC+ G +D+A EL  +M+++ +                                    
Sbjct: 120 SGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNGDCP 179

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDVV Y++LI G C     +EA  L  +M +   +PDVVTF  +MD LCK  ++ EA ++
Sbjct: 180 PDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQV 239

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LE M  R   PN  T+S+L+DG C TG+V  A+E+F  M   G +  V +Y
Sbjct: 240 LETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTY 290



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 143/281 (50%), Gaps = 7/281 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L KT        LF  + +    PD+ TY+ LI  FCK+ R+     +
Sbjct: 320 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 379

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+    PD V F++L++G C    + +A  L  ++ A  C P+V TY++L++G C+
Sbjct: 380 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 439

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  + + MA    K G  C+PN VTYT +ID  C+ G    A +L  +M    +
Sbjct: 440 VGRMVEARRVLKRMA----KRG--CQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVGNGV 493

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            P+V+TY SLI GFC   D  EA  +L  +  D+  + D+  + V+MD LC+ G+M  A 
Sbjct: 494 QPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 553

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            LLE +   G  P    +  L+ G C    +  A E+   M
Sbjct: 554 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 594



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L G   K +  D   +LF  +    + PD+ T++ L+  +C  G V     +
Sbjct: 355 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 414

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S  +PD   +TSL+ G C   R++EA  +  ++   GC+PNV+TY+ LI+  CR
Sbjct: 415 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 474

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKN 283
            G   VA  L EEM  GNG      +PN +TY ++I G C  G +++A+++  ++ +D+N
Sbjct: 475 AGKPTVAYKLLEEMV-GNG-----VQPNVITYRSLIGGFCGTGDLEEARKMLERLERDEN 528

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              D+  Y  ++ G C     + A  LL  +   G  P    +  ++  LC+  ++ +A 
Sbjct: 529 CKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAM 588

Query: 344 RLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +LE M L R   PN   +  ++      GR   A  L
Sbjct: 589 EVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANAL 626



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 72/189 (38%), Positives = 111/189 (58%), Gaps = 6/189 (3%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+ NVIT++ +I+GLC+      A   F +M     K G V  PN  TY  +I+G CK  
Sbjct: 3   CEKNVITWTIMIDGLCKANRLPEATTYFAKMK----KKGTV--PNEWTYNVLINGFCKVH 56

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  L  +MK+  + P+VVTY+++IHGFC     + A  L  +M++ G  P++VT+N
Sbjct: 57  KVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYN 116

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+NG MDEA  LL+ M  RG+ P+  ++ TLM G C TG+++ A ++F    + 
Sbjct: 117 TLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSNG 176

Query: 388 GCKHTVFSY 396
            C   V +Y
Sbjct: 177 DCPPDVVAY 185


>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
 gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
          Length = 797

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 123/343 (35%), Positives = 183/343 (53%), Gaps = 21/343 (6%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK----- 119
            LE+ +  R +S   G       ++A  +FD +L     P  + +FN L   +++     
Sbjct: 14  ELERVIGSRARSGSLG------LDDALKLFDGLLT-HARPASVIAFNHLLTAVSRVSGRR 66

Query: 120 --TKHYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
             T   + V+SLF R+    +  + PD  TY+ILI CFC+MGR+ HGF   G IL+S + 
Sbjct: 67  SSTTESELVVSLFNRMIRECTIKVTPDPCTYSILIGCFCRMGRLEHGFATFGLILKSGWR 126

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            + +    L+KGLC   R+ EA  +  K +   GC P+V++Y+TL+ G C       AL 
Sbjct: 127 VNNIVINQLLKGLCDAKRLCEAMDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALE 186

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   MA+  G+    C PN V+Y  +I+G   EG VDKA  LFL+M D+ I P+VVTY +
Sbjct: 187 LLHMMADSQGR---SCPPNVVSYAIVINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTT 243

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +I G C A   + A  +  +M+D+GV+PD  T+N ++      GK  E  R+LE M   G
Sbjct: 244 VIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNCLIHGYLSIGKWKEVVRMLEEMSAHG 303

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + P+  T+ +L++  C  GR   A+ LF SM   G K  V  Y
Sbjct: 304 LKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKGIKPNVAIY 346



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 166/338 (49%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +F  M++ R   P + ++  +   L K +  D    +F+++   G+ PD  TYN 
Sbjct: 220 DKAYNLFLEMMD-RGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYNC 278

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +  +G+      +L  +      PD   + SL+  LC   R  EA  LF  +   G
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAHGLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIRKG 338

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGVV-------------- 248
            KPNV  Y  LI+G    G     H ++ L +   ++  +  F ++              
Sbjct: 339 IKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAM 398

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V Y  +ID LCK G VD A   F QM ++ + P++  +NSL++G 
Sbjct: 399 HIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGVAPNIFVFNSLVYGL 458

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W +A     EM++QG++PDVV FN I+  LC  G++ +A RL++LM   G  P  
Sbjct: 459 CTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGV 518

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++TL+ G CL GR++ A +    M S+G K   ++Y
Sbjct: 519 ISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTY 556



 Score =  154 bits (388), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 87/321 (27%), Positives = 152/321 (47%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN++F   AK    D  + +F ++   GL PD+  Y  LI+  CK+GRV    + 
Sbjct: 376 PDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLK 435

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+   F SL+ GLC   +  +A   + ++   G +P+V+ ++T++  LC 
Sbjct: 436 FNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQGIRPDVVFFNTILCNLCT 495

Query: 225 TGHTIVALNLFEEMANGNGKFGVVC-----------------------------KPNTVT 255
            G  + A  L + M     + GV+                              KP+  T
Sbjct: 496 KGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWT 555

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T++ G C+ G +D A  +F +M    I P VVTY++++HG      ++EA  L + M+
Sbjct: 556 YNTLLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMI 615

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G Q ++  +N+I++ L KN  +DEA +L + +  +      +TF+ ++     +GR  
Sbjct: 616 TSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFNIMIGALFKSGRNE 675

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF ++ S G    VF+Y
Sbjct: 676 DAMHLFATISSYGLVPDVFTY 696



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  +   P +  + +L    A       +  L   +   GL PD + +NI+
Sbjct: 326 EARFLFDSMIR-KGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVENGLSPDHHIFNII 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              + K   +     +  ++ +   +PD V + +LI  LC   R+ +A   F ++   G 
Sbjct: 385 FTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVLKFNQMMNEGV 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+  +++L+ GLC       A   + EM N         +P+ V + TI+  LC +G 
Sbjct: 445 APNIFVFNSLVYGLCTVDKWEKAKEFYFEMLNQG------IRPDVVFFNTILCNLCTKGQ 498

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V KA+ L   M+     P V++Y +LI G C     +EA   L  M+  G++PD  T+N 
Sbjct: 499 VMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNT 558

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C+ G++D+A  +   M+  G+ P   T+ST++ G   T R + AKEL+++M + G
Sbjct: 559 LLHGYCRAGRIDDAYGVFREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSG 618

Query: 389 CKHTVFSY 396
            +  ++ Y
Sbjct: 619 KQWNIWIY 626



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 146/301 (48%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P      +L++G L     ++     +  + + G+ PD+  +N 
Sbjct: 430 DDAVLKFNQMMNEGVAPNIFVFNSLVYG-LCTVDKWEKAKEFYFEMLNQGIRPDVVFFNT 488

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C  G+V     ++  + R    P  +++T+LI G C   RI EAA     + + G
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVG 548

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+  TY+TL++G CR G    A  +F EM   NG       P  VTY+TI+ GL    
Sbjct: 549 LKPDEWTYNTLLHGYCRAGRIDDAYGVFREMLR-NG-----ITPGVVTYSTILHGLFTTR 602

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AKEL+L M       ++  YN +++G    N  +EA  L   +  +  Q ++ TFN
Sbjct: 603 RFSEAKELYLNMITSGKQWNIWIYNIILNGLSKNNCVDEAFKLFQSLCSKDFQLEITTFN 662

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K+G+ ++A  L   +   G+ P+  T+  + +     G +    +LF +ME  
Sbjct: 663 IMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKS 722

Query: 388 G 388
           G
Sbjct: 723 G 723



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 6/242 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+  L G        D        + S GL PD +TYN L++ +C+ GR+   + V
Sbjct: 516 PGVISYTTLIGGHCLVGRIDEAAKSLDVMLSVGLKPDEWTYNTLLHGYCRAGRIDDAYGV 575

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR+  TP  V +++++ GL    R  EA  L+  +   G + N+  Y+ ++NGL +
Sbjct: 576 FREMLRNGITPGVVTYSTILHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLSK 635

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF+ + + + +  +       T+  +I  L K G  + A  LF  +    +
Sbjct: 636 NNCVDEAFKLFQSLCSKDFQLEIT------TFNIMIGALFKSGRNEDAMHLFATISSYGL 689

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY  +           E + L   M   G  P+    N ++  L   G +  A  
Sbjct: 690 VPDVFTYCLIAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGA 749

Query: 345 LL 346
            L
Sbjct: 750 YL 751



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 1/150 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +F  + + +     +T+FN++ G L K+   +  + LF  ++S GL PD++TY +
Sbjct: 640 DEAFKLFQSLCS-KDFQLEITTFNIMIGALFKSGRNEDAMHLFATISSYGLVPDVFTYCL 698

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +     + G +     +   + +S  TP++    +L++ L     I  A A   KL    
Sbjct: 699 IAENLIEEGYLEEFDDLFSAMEKSGTTPNSRMLNALVRRLLHRGDITRAGAYLCKLDEKN 758

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEE 237
                 T + LI+ L R  +   A +L E+
Sbjct: 759 FSLEASTTAMLISLLSRDEYHHHATSLPEK 788


>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
 gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
          Length = 755

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/280 (38%), Positives = 159/280 (56%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L +    D    L   +   GL PD ++Y+ L+   CK G++     V
Sbjct: 229 PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
                     PD VA+++LI GLC   R+ EA  LF K++   C+P+V+T++ L++GLC+
Sbjct: 289 FEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 348

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + E M + N      C PN +TY+++IDGLCK G V  A+E+F +M  + I
Sbjct: 349 GDRLQEAQQVLETMEDRN------CTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGI 402

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTYNSLIHGFC  N  + A  L+ EM   G  PD++T+N ++D LCK G+  EA+R
Sbjct: 403 EPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANR 462

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L   M  +  NP+  T+S L+ GFC   R++ A+ LF  M
Sbjct: 463 LFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTLFDDM 502



 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 110/294 (37%), Positives = 165/294 (56%), Gaps = 8/294 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +++ L   L K    D    LF+++      PD+ T+  L++  CK  R+     
Sbjct: 298 PPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCKGDRLQEAQQ 357

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL  +     TP+ + ++SLI GLC   ++ +A  +F ++   G +PNV+TY++LI+G C
Sbjct: 358 VLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNVVTYNSLIHGFC 417

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            T     AL L EEM A G       C P+ +TY T+IDGLCK G   +A  LF  MK K
Sbjct: 418 MTNGVDSALLLMEEMTATG-------CLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAK 470

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             NPDV+TY+ LI GFC     + A  L  +M+ Q V PDVVTF+ +++  C  G +D+A
Sbjct: 471 FCNPDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDA 530

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RLLE M+    +P+  T+++L+DGFC  GR+  A+ +   M   GC+  V +Y
Sbjct: 531 ERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTY 584



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 182/338 (53%), Gaps = 42/338 (12%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
            DY  +M      +T + ++   L K        + F ++   G  P+ +TYN+LIN FC
Sbjct: 114 LDYFRSMECEKNVIT-WTIMIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFC 172

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K+ +V   +++L  +  S   P+ V ++++I G C ++++  A  LF ++   GC PN++
Sbjct: 173 KVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLV 232

Query: 214 TYSTLINGLCR-----------------------------------TGHTIVALNLFEEM 238
           TY+TL++GLCR                                   TG   +AL +FE+ 
Sbjct: 233 TYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDN 292

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           +NG+      C P+ V Y+T+I GLCK G +D+A +LF +M++ +  PDVVT+ +L+ G 
Sbjct: 293 SNGD------CPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRENSCEPDVVTFTALMDGL 346

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  +   EA  +L  M D+   P+V+T++ ++D LCK G++ +A  + + MI+RG+ PN 
Sbjct: 347 CKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKRMIVRGIEPNV 406

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+++L+ GFC+T  V+ A  L   M + GC   + +Y
Sbjct: 407 VTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITY 444



 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 113/310 (36%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M +   +P  +T  +L+ G L KT        +FKR+   G+ P++ TYN 
Sbjct: 353 QEAQQVLETMEDRNCTPNVITYSSLIDG-LCKTGQVRDAQEVFKRMIVRGIEPNVVTYNS 411

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FC    V    +++  +  +   PD + + +LI GLC   R  EA  LF  +KA  
Sbjct: 412 LIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKF 471

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+VITYS LI G C+     +A  LF++M     K  V+  P+ VT++T+++G C  G
Sbjct: 472 CNPDVITYSCLIGGFCKLERIDMARTLFDDML----KQAVL--PDVVTFSTLVEGYCNAG 525

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A+ L  +M   + +PDV TY SL+ GFC      EA  +L  M  +G QP+VVT+ 
Sbjct: 526 LVDDAERLLEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYT 585

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME-S 386
            ++D  C+ GK   A RLLE M+  GV PN  T+ +L+ GFC TG +  A+++   +E  
Sbjct: 586 ALIDAFCRAGKPTVAYRLLEEMVGNGVQPNVITYRSLIGGFCGTGDLEEARKILERLERD 645

Query: 387 MGCKHTVFSY 396
             CK  +F+Y
Sbjct: 646 ENCKADMFAY 655



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 161/310 (51%), Gaps = 9/310 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A   F +    +     + ++N LF  L + +  D    + K     G+ P+++TY 
Sbjct: 4   PDAALRFFHWASKQQGFDHNVYTYNRLFEALLRARRIDETCHILKNGWPPGITPNVFTYA 63

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ++I   CK G +     +L  +  S   PDA  +  +I  LC      +A   F   ++ 
Sbjct: 64  VVIQGLCKSGDLDKACELLEEMRESGPVPDAAIYNFVIHALCKARNTAKALDYF---RSM 120

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C+ NVIT++ +I+GLC+      A   F +M     K G V  PN  TY  +I+G CK 
Sbjct: 121 ECEKNVITWTIMIDGLCKANRLPEATTYFAKMK----KKGTV--PNEWTYNVLINGFCKV 174

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V +A  L  +MK+  + P+VVTY+++IHGFC     + A  L  +M++ G  P++VT+
Sbjct: 175 HKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTY 234

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++  LC+NG MDEA  LL+ M  RG+ P+  ++ TLM G C TG+++ A ++F    +
Sbjct: 235 NTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVFEDNSN 294

Query: 387 MGCKHTVFSY 396
             C   V +Y
Sbjct: 295 GDCPPDVVAY 304



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/281 (32%), Positives = 142/281 (50%), Gaps = 7/281 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L KT        LF  + +    PD+ TY+ LI  FCK+ R+     +
Sbjct: 439 PDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDVITYSCLIGGFCKLERIDMARTL 498

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+    PD V F++L++G C    + +A  L  ++ A  C P+V TY++L++G C+
Sbjct: 499 FDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVDGFCK 558

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  + + MA    K G  C+PN VTYT +ID  C+ G    A  L  +M    +
Sbjct: 559 VGRMVEARRVLKRMA----KRG--CQPNVVTYTALIDAFCRAGKPTVAYRLLEEMVGNGV 612

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            P+V+TY SLI GFC   D  EA  +L  +  D+  + D+  + V+MD LC+ G+M  A 
Sbjct: 613 QPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDGLCRTGRMSAAL 672

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            LLE +   G  P    +  L+ G C    +  A E+   M
Sbjct: 673 ELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAMEVLEEM 713



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 139/278 (50%), Gaps = 8/278 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L G   K +  D   +LF  +    + PD+ T++ L+  +C  G V     +
Sbjct: 474 PDVITYSCLIGGFCKLERIDMARTLFDDMLKQAVLPDVVTFSTLVEGYCNAGLVDDAERL 533

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S  +PD   +TSL+ G C   R++EA  +  ++   GC+PNV+TY+ LI+  CR
Sbjct: 534 LEEMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCR 593

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKN 283
            G   VA  L EEM  GNG      +PN +TY ++I G C  G +++A+++  ++ +D+N
Sbjct: 594 AGKPTVAYRLLEEMV-GNG-----VQPNVITYRSLIGGFCGTGDLEEARKILERLERDEN 647

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              D+  Y  ++ G C     + A  LL  +   G  P    +  ++  LC+  ++ +A 
Sbjct: 648 CKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGLCQGKELGKAM 707

Query: 344 RLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +LE M L R   PN   +  ++      GR   A  L
Sbjct: 708 EVLEEMTLSRKSRPNAEAYEAVIQELAREGRHEEANAL 745


>gi|296087921|emb|CBI35204.3| unnamed protein product [Vitis vinifera]
          Length = 543

 Score =  210 bits (535), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 119/300 (39%), Positives = 165/300 (55%), Gaps = 41/300 (13%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T + A   F+ ML M+P PP    FN L   +AK KH+ T+LSL  +++S G+ P++YT 
Sbjct: 41  TIDGAISSFNRMLRMQP-PPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTL 99

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +ILIN FC + R                                  +I EA  LF K+  
Sbjct: 100 HILINSFCHLNR---------------------------------GKIGEALHLFDKMIG 126

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+V+TY TLINGLC+ G+T  A+ L   M   N      C+PN   Y TIID LCK
Sbjct: 127 EGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKN------CQPNVFAYNTIIDSLCK 180

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  LF +M  K I+PD+ TYNSLIH  C   +W     LL EM+D  + PDVV+
Sbjct: 181 DRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATLLNEMVDSKIMPDVVS 240

Query: 326 FNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           FN ++D LCK GK+ EA  +++ MI R G  PN  +++TL++G+C   R++ A  LF  M
Sbjct: 241 FNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYCKIQRIDKAMYLFGEM 300



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 151/286 (52%), Gaps = 7/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +      +LF  + + G+ PD++TYN LI+  C +    H   +
Sbjct: 166 PNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSLIHALCNLCEWKHVATL 225

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
           L  ++ S   PD V+F +++  LC E ++ EA  +  K+ +  GC PNVI+Y+TLING C
Sbjct: 226 LNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGGCMPNVISYNTLINGYC 285

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +      A+ LF EM            P+TVTY+T+I GLC    +  A  LF +M   +
Sbjct: 286 KIQRIDKAMYLFGEMCRQE------LIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACS 339

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P++VTY  L+   C      EA  LL  +    + PD+   N+ +D +C+ G+++ A 
Sbjct: 340 QIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAAR 399

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            L   +  +G+ P+  T+S +++G C  G ++ A +LF  M+  GC
Sbjct: 400 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGC 445



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 136/262 (51%), Gaps = 13/262 (4%)

Query: 105 PPLTSFNLLFGCLAK----TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           P + SFN +   L K    T+ +D V  + +R    G  P++ +YN LIN +CK+ R+  
Sbjct: 236 PDVVSFNTVVDALCKEGKVTEAHDVVDKMIQR---GGCMPNVISYNTLINGYCKIQRIDK 292

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              + G + R    PD V +++LI GLC   R+ +A ALF ++ A    PN++TY  L++
Sbjct: 293 AMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLD 352

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+  +   A+ L + +   N        P+       IDG+C+ G ++ A++LF  + 
Sbjct: 353 YLCKNRYLAEAMALLKAIEGSN------LDPDIQVNNIAIDGMCRAGELEAARDLFSNLS 406

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K + PDV TY+ +I+G C     +EA+ L  EM + G   +   +N I     +N +  
Sbjct: 407 SKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRNNETS 466

Query: 341 EASRLLELMILRGVNPNTSTFS 362
            A +LL+ M+ RG + + ST +
Sbjct: 467 RAIQLLQEMVARGFSADASTMT 488



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 2/130 (1%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A   F +M      P  V +N L+         +    L  +M   G+ P++ T ++
Sbjct: 42  IDGAISSFNRMLRMQPPPSTVDFNKLLTSIAKMKHHSTLLSLSHQMDSFGIPPNIYTLHI 101

Query: 329 IMDELCK--NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +++  C    GK+ EA  L + MI  G  P+  T+ TL++G C  G  + A  L  SM  
Sbjct: 102 LINSFCHLNRGKIGEALHLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQ 161

Query: 387 MGCKHTVFSY 396
             C+  VF+Y
Sbjct: 162 KNCQPNVFAY 171


>gi|242081015|ref|XP_002445276.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
 gi|241941626|gb|EES14771.1| hypothetical protein SORBIDRAFT_07g007630 [Sorghum bicolor]
          Length = 768

 Score =  210 bits (535), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 129/357 (36%), Positives = 189/357 (52%), Gaps = 24/357 (6%)

Query: 52  LKESLRLTVK-DRA-SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTS 109
           +  S R+T   DR   LE+ +  R +S   G       ++A  +FD ML     P  + +
Sbjct: 1   MSRSRRVTAAADRCLELERVIAGRARSGSLG------LDDALKLFDEMLTY-ARPASVRT 53

Query: 110 FNLLFGCLAKTK---HYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFV 163
           FN L   +++ +     + V+SLF R+    S  + P   TY ILI CFC+MGR+ HGF 
Sbjct: 54  FNRLLTVVSRARCSSASELVVSLFNRMIRECSVKVAPSSCTYTILIGCFCRMGRLKHGFA 113

Query: 164 VLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLING 221
             G IL++ ++  + V F  L+KGLC   R+ EA   L  ++  FGC  NVI+Y+ L+ G
Sbjct: 114 AFGLILKTGWSLNNTVIFGQLLKGLCDAKRVDEATDILLRRMPEFGCTLNVISYNILLKG 173

Query: 222 LCRTGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           LC       AL L   MA+ G+G       PN VTYTT+IDGLCK   VD+AK +F  M 
Sbjct: 174 LCNEKRAEEALELMHMMADDGDGSH----TPNVVTYTTVIDGLCKAQMVDRAKGVFQHMI 229

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           DK + P+  TY  LIHG+     W E   +L EM   G+QPD V + V++D LCKNG+  
Sbjct: 230 DKGVRPNNHTYTCLIHGYLSTGKWKEVVQMLQEMSTHGLQPDCVIYAVLLDYLCKNGRCT 289

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           EA  + + +I +G+ P+ + +  L+ G+   G ++        M   G    H +F+
Sbjct: 290 EARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFN 346



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F +M++    P   T   L+ G L+ T  +  V+ + + +++ GL PD   Y +
Sbjct: 219 DRAKGVFQHMIDKGVRPNNHTYTCLIHGYLS-TGKWKEVVQMLQEMSTHGLQPDCVIYAV 277

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR +    +   ++R    P    +  L+ G   E  + E  +    +   G
Sbjct: 278 LLDYLCKNGRCTEARNIFDSLIRKGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNG 337

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+   ++ + N   +      A+++F++M            P  V Y  +ID LCK G
Sbjct: 338 VSPDHHIFNIMFNAYAKKAMIDEAMHIFDKMRQQ------WLSPGVVNYGALIDALCKLG 391

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A   F QM ++ + PD+  ++SL++G C  + W +A  L  E++DQG++ +   FN
Sbjct: 392 RVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQGIRLNAAFFN 451

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++M  LC+ G++ EA RL++LM+   V P+  +++TL+DG CLTGR++ A +L   M S+
Sbjct: 452 ILMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSI 511

Query: 388 GCKHTVFSY 396
           G K   F+Y
Sbjct: 512 GLKPDEFTY 520



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/317 (29%), Positives = 157/317 (49%), Gaps = 7/317 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T    +E     D M+    SP     FN++F   AK    D  + +F ++    L
Sbjct: 315 HGYATEGALSEMHSFLDLMVRNGVSPDHHI-FNIMFNAYAKKAMIDEAMHIFDKMRQQWL 373

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P +  Y  LI+  CK+GRV    +   +++    TPD   F+SL+ GLC   +  +A  
Sbjct: 374 SPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGVTPDIFVFSSLVYGLCTVDKWEKAEK 433

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF ++   G + N   ++ L+  LCR G  + A  L + M        V  +P+ ++Y T
Sbjct: 434 LFFEVLDQGIRLNAAFFNILMCNLCREGRVMEAQRLIDLM------LRVDVRPDVISYNT 487

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++DG C  G +D+A +L   M    + PD  TYN+L+HG+C A   ++A  L  EM+ +G
Sbjct: 488 LVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKG 547

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + P VVT+N I+  L + G+  EA  L   MI      +  T++ +++G C    V+ A 
Sbjct: 548 LTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAF 607

Query: 379 ELFVSMESMGCKHTVFS 395
           ++F S+ S   +  +F+
Sbjct: 608 KMFQSLCSKDLQLDIFT 624



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD ++  +   P +T + +L    A       + S    +   G+ PD + +NI+
Sbjct: 290 EARNIFDSLIR-KGIKPHVTIYGILLHGYATEGALSEMHSFLDLMVRNGVSPDHHIFNIM 348

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            N + K   +     +  ++ +   +P  V + +LI  LC   R+ +A   F ++   G 
Sbjct: 349 FNAYAKKAMIDEAMHIFDKMRQQWLSPGVVNYGALIDALCKLGRVDDAVLKFNQMINEGV 408

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++  +S+L+ GLC       A  LF E+ +         + N   +  ++  LC+EG 
Sbjct: 409 TPDIFVFSSLVYGLCTVDKWEKAEKLFFEVLDQG------IRLNAAFFNILMCNLCREGR 462

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A+ L   M   ++ PDV++YN+L+ G C     +EA  LL  M+  G++PD  T+N 
Sbjct: 463 VMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNT 522

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CK  ++D+A  L   M+++G+ P   T++T++ G    GR   AKEL+++M +  
Sbjct: 523 LLHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNR 582

Query: 389 CKHTVFSY 396
            K  +++Y
Sbjct: 583 RKCDIYTY 590



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 148/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P      +L++G L     ++    LF  +   G+  +   +NI
Sbjct: 394 DDAVLKFNQMINEGVTPDIFVFSSLVYG-LCTVDKWEKAEKLFFEVLDQGIRLNAAFFNI 452

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   C+ GRV     ++  +LR    PD +++ +L+ G C   RI EAA L   + + G
Sbjct: 453 LMCNLCREGRVMEAQRLIDLMLRVDVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIG 512

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+  TY+TL++G C+      A +LF EM            P  VTY TI+ GL + G
Sbjct: 513 LKPDEFTYNTLLHGYCKARRIDDAYSLFREMLMKG------LTPGVVTYNTILHGLFQIG 566

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AKEL+L M +     D+ TY  +++G C  N  +EA  +   +  + +Q D+ T N
Sbjct: 567 RFCEAKELYLNMINNRRKCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIFTIN 626

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K G+ ++A  L   +   G+ P+  T+  + +     G +    ELF +ME  
Sbjct: 627 IMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEEN 686

Query: 388 G 388
           G
Sbjct: 687 G 687



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 122/292 (41%), Gaps = 7/292 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML +    P + S+N L      T   D    L   + S GL PD +TYN L
Sbjct: 465 EAQRLIDLMLRV-DVRPDVISYNTLVDGHCLTGRIDEAAKLLDVMVSIGLKPDEFTYNTL 523

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +CK  R+   + +   +L    TP  V + +++ GL    R  EA  L+  +     
Sbjct: 524 LHGYCKARRIDDAYSLFREMLMKGLTPGVVTYNTILHGLFQIGRFCEAKELYLNMINNRR 583

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K ++ TY+ ++NGLCR      A  +F+ + + + +  +       T   +I  L K G 
Sbjct: 584 KCDIYTYTIILNGLCRNNFVDEAFKMFQSLCSKDLQLDIF------TINIMIGALLKGGR 637

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A +LF  +    + PDV TY  +           E + L   M + G  P+    N 
Sbjct: 638 KEDAMDLFATISAYGLVPDVETYRLIAENLIKEGSLEELDELFSAMEENGTAPNSRMLNA 697

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++  L   G +  A   L  +  +  +   ST S L+  +        AK L
Sbjct: 698 LVRWLLHRGDIGRAGVYLSKLDEKNFSLEASTTSMLISIYSRAEYQQLAKSL 749



 Score = 41.6 bits (96), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 33/150 (22%), Positives = 65/150 (43%), Gaps = 1/150 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +F  + + +     + + N++ G L K    +  + LF  +++ GL PD+ TY +
Sbjct: 604 DEAFKMFQSLCS-KDLQLDIFTINIMIGALLKGGRKEDAMDLFATISAYGLVPDVETYRL 662

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +     K G +     +   +  +   P++    +L++ L     I  A    +KL    
Sbjct: 663 IAENLIKEGSLEELDELFSAMEENGTAPNSRMLNALVRWLLHRGDIGRAGVYLSKLDEKN 722

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEE 237
                 T S LI+   R  +  +A +L E+
Sbjct: 723 FSLEASTTSMLISIYSRAEYQQLAKSLPEK 752


>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
          Length = 558

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/304 (35%), Positives = 178/304 (58%), Gaps = 9/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL--FKRLNSTGLFPDLYTY 145
           ++A  +F  M+  RP  P +  FN L   +AK K +D V+SL    ++   G  P + T 
Sbjct: 24  DDAIGLFGGMVKSRP-LPSIFEFNKLLSAIAKMKKFDLVISLALLGKMMKLGYEPSIVTL 82

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           + L+N +C   R+S    ++ +++   + PD + FT+LI GL   ++  EA AL  ++  
Sbjct: 83  SSLLNGYCHGKRISDAVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQ 142

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            GC+PN++TY  ++NGLC+ G   +A NL  +M           + + V + TIID LCK
Sbjct: 143 RGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK------IEADVVIFNTIIDSLCK 196

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              VD A  LF +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++ + P++VT
Sbjct: 197 YRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKINPNLVT 256

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++D   K GK  EA +L + MI R ++P+  T+++L++GFC+  R++ AK++F  M 
Sbjct: 257 FNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMV 316

Query: 386 SMGC 389
           S  C
Sbjct: 317 SKDC 320



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 153/287 (53%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN +   L K +H D  L+LFK + + G+ P++ TY+ LI+C C  GR S    +L  ++
Sbjct: 187 FNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMI 246

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V F +LI     E + +EA  L   +      P++ TY++LING C      
Sbjct: 247 EKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLD 306

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FE M + +      C P+  TY T+I G CK   V+   ELF +M  + +  D V
Sbjct: 307 KAKQMFEFMVSKD------CFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTV 360

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LI G  +  D + A  +  +M+  GV PD++T+++++D LC NGK+++A  + + M
Sbjct: 361 TYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYM 420

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               +  +   ++T+++G C  G+V+   +LF S+   G K  V +Y
Sbjct: 421 QKSEIKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTY 467



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 140/283 (49%), Gaps = 8/283 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     K   +     L   +    + PD++TYN LIN FC   R+     +
Sbjct: 252 PNLVTFNALIDAFVKEGKFVEAEKLHDDMIKRSIDPDIFTYNSLINGFCMHDRLDKAKQM 311

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              ++ + CF PD   + +LIKG C   R+ +   LF ++   G   + +TY+TLI GL 
Sbjct: 312 FEFMVSKDCF-PDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLF 370

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  +F++M +          P+ +TY+ ++DGLC  G ++KA E+F  M+   
Sbjct: 371 HDGDCDNAQKVFKQMVSDG------VPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSE 424

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D+  Y ++I G C A   ++   L   +  +GV+P+VVT+N ++  LC    + EA 
Sbjct: 425 IKLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAY 484

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            LL+ M   G  P++ T++TL+      G    + EL   M S
Sbjct: 485 ALLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREMRS 527



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 130/261 (49%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+  R   P + ++N L          D    +F+ + S   FPDL TYN L
Sbjct: 272 EAEKLHDDMIK-RSIDPDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTL 330

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  +   +       D V +T+LI+GL  +     A  +F ++ + G 
Sbjct: 331 IKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGV 390

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TYS L++GLC  G    AL +F+ M     K  +        YTT+I+G+CK G 
Sbjct: 391 PPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDI------YIYTTMIEGMCKAGK 444

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD   +LF  +  K + P+VVTYN++I G C      EA  LL +M + G  PD  T+N 
Sbjct: 445 VDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDGPLPDSGTYNT 504

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++    ++G    ++ L+  M
Sbjct: 505 LIRAHLRDGDKAASAELIREM 525


>gi|297840249|ref|XP_002888006.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297333847|gb|EFH64265.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 485

 Score =  209 bits (532), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 112/301 (37%), Positives = 178/301 (59%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M+  RP  P +  F+ L   +AK+K+YD V+SLF  +   G+  DLYTYNI
Sbjct: 51  DEAIDLFCNMIQSRP-LPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +INC C+  R      V+G++++  + PD V  +SLI G C  +R+  A  L +K++   
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CK +V+ Y+T+I+G C+TG    AL LF  M     + GV  + +TVTY +++ GLC  G
Sbjct: 170 CKLDVVIYNTIIDGFCKTGLVNNALVLFGRME----RDGV--RADTVTYNSLVTGLCCSG 223

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A  L   M  ++I P+V+T+ +LI+ F     + EA     EM+ + + PDV T+N
Sbjct: 224 RRSDAARLMRDMVMRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYN 283

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC +G++DEA ++L+LM+ +G  P+  T++TL++GFC T RV+   +L   M   
Sbjct: 284 SMIHGLCMHGQVDEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQR 343

Query: 388 G 388
           G
Sbjct: 344 G 344



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 102/339 (30%), Positives = 155/339 (45%), Gaps = 39/339 (11%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +   M+     P  +T  +L+ G     + +  V  L  ++       D+  YN +I
Sbjct: 123 ALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAV-DLVSKMEEMRCKLDVVIYNTII 181

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FCK G V++  V+ GR+ R     D V + SL+ GLC   R  +AA L   +      
Sbjct: 182 DGFCKTGLVNNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAARLMRDMVMRDIV 241

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNVIT++ LIN   R G  + A   +EEM            P+  TY ++I GLC  G V
Sbjct: 242 PNVITFTALINAFVREGKFLEAKKFYEEMIRR------CIDPDVFTYNSMIHGLCMHGQV 295

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+AK++   M  K   PDVVTYN+LI+GFC     +E   L+ EM  +G+  D VTFN I
Sbjct: 296 DEAKQILDLMVTKGCFPDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTI 355

Query: 330 MDE--------------------------------LCKNGKMDEASRLLELMILRGVNPN 357
           +                                  LC N ++++A  L E M    +  +
Sbjct: 356 IQGYFQAGRPDAAQEIFSRMGSRPNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELD 415

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +T++ ++ G C+ G V  A +LF S+   G +  V +Y
Sbjct: 416 ITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTY 454



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 149/301 (49%), Gaps = 10/301 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F  M         +T  +L+ G     +  D    L + +    + P++ T+  
Sbjct: 191 NNALVLFGRMERDGVRADTVTYNSLVTGLCCSGRRSDAA-RLMRDMVMRDIVPNVITFTA 249

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN F + G+          ++R C  PD   + S+I GLC   ++ EA  +   +   G
Sbjct: 250 LINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVDEAKQILDLMVTKG 309

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+TLING C+T        L  EM+    + G+V   +TVT+ TII G  + G
Sbjct: 310 CFPDVVTYNTLINGFCKTKRVDEGTKLVREMS----QRGLVV--DTVTFNTIIQGYFQAG 363

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+E+F +M  +   P++ TY+ L++G CY     +A  L   M    ++ D+ T+N
Sbjct: 364 RPDAAQEIFSRMGSR---PNIRTYSILLYGLCYNWRVEKALVLFESMQKSEMELDITTYN 420

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  +C  G +++A  L   +  +G+ P+  T++T++ GFC     + A  L+  M+  
Sbjct: 421 IVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRLWDKADFLYRKMQED 480

Query: 388 G 388
           G
Sbjct: 481 G 481



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/258 (27%), Positives = 123/258 (47%), Gaps = 11/258 (4%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           MR   P + +F  L     +   +      ++ +    + PD++TYN +I+  C  G+V 
Sbjct: 237 MRDIVPNVITFTALINAFVREGKFLEAKKFYEEMIRRCIDPDVFTYNSMIHGLCMHGQVD 296

Query: 160 HGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
               +L  ++ + CF PD V + +LI G C   R+ E   L  ++   G   + +T++T+
Sbjct: 297 EAKQILDLMVTKGCF-PDVVTYNTLINGFCKTKRVDEGTKLVREMSQRGLVVDTVTFNTI 355

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G  + G    A  +F  M +         +PN  TY+ ++ GLC    V+KA  LF  
Sbjct: 356 IQGYFQAGRPDAAQEIFSRMGS---------RPNIRTYSILLYGLCYNWRVEKALVLFES 406

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M+   +  D+ TYN +IHG C   +  +A  L   +  +G++PDVVT+  ++   C+   
Sbjct: 407 MQKSEMELDITTYNIVIHGMCMIGNVEDAWDLFCSLSFKGLEPDVVTYTTMISGFCRKRL 466

Query: 339 MDEASRLLELMILRGVNP 356
            D+A  L   M   G+ P
Sbjct: 467 WDKADFLYRKMQEDGLLP 484



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 65/128 (50%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A +LF  M      P +V ++ L+     + +++    L   M   G+  D+ T+N+
Sbjct: 50  LDEAIDLFCNMIQSRPLPSIVEFSKLLSNIAKSKNYDLVISLFHNMEICGIGHDLYTYNI 109

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LC+  +   A  ++  M+  G  P+  T S+L++GFC   RV  A +L   ME M 
Sbjct: 110 VINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFGAVDLVSKMEEMR 169

Query: 389 CKHTVFSY 396
           CK  V  Y
Sbjct: 170 CKLDVVIY 177


>gi|358344944|ref|XP_003636545.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502480|gb|AES83683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1280

 Score =  209 bits (531), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 118/310 (38%), Positives = 170/310 (54%), Gaps = 22/310 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYN 146
           + A   F+ M  +R +P  +  FN +   L KTK HY TVLSL  ++ S G+ PDL+T +
Sbjct: 48  DNAVLSFNRMRQIRQTPS-IVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 106

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILINC+C +G+++  F V  +IL+               GLC   ++ EA      + A 
Sbjct: 107 ILINCYCHLGQMTFAFSVFAKILKM--------------GLCLNGKVNEALLFHDHVLAL 152

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   N +TY  LINGLC+ G T  AL +  ++       G +   N V Y+TIIDGLCK+
Sbjct: 153 GFHLNHVTYGILINGLCKMGQTRAALQVLRQIE------GKLVNTNVVMYSTIIDGLCKD 206

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V  A  L+ +M  K I P VVT++SLI+GFC    + +A  L  EM+ + + PD  TF
Sbjct: 207 KLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMVMKNINPDAYTF 266

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D LCK GK+ EA  ++ +M+  GV P   T++TLMDG+CL   V  AK +   +  
Sbjct: 267 NILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISR 326

Query: 387 MGCKHTVFSY 396
           M       SY
Sbjct: 327 MRVAPNSRSY 336



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 94/311 (30%), Positives = 164/311 (52%), Gaps = 13/311 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ ++  M+  R  P  +T  +L++G     K  D    LF  +    + PD YT+NIL
Sbjct: 211 DAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDA-FRLFNEMVMKNINPDAYTFNIL 269

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G++     V+  +++    P  V + +L+ G C  + + +A  + + +     
Sbjct: 270 VDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYCLVNEVGKAKHVLSIISRMRV 329

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCK 265
            PN  +Y+ +ING C+      AL LF EM          C+   P+ VTY ++IDGLCK
Sbjct: 330 APNSRSYNIMINGFCKIKMVDEALCLFHEMC---------CRGIAPHKVTYNSLIDGLCK 380

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +  A EL  +M +  I  D+VTYNSLI  FC     ++A  L+ ++ + G+QP++ T
Sbjct: 381 AGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIALVKKIKEHGIQPNMCT 440

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N+++D LCK G++  A  + + ++++G N N  T++ +++G C  G  + A+ L   ME
Sbjct: 441 YNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYNIMINGLCKEGLFDEAEVLLSKME 500

Query: 386 SMGCKHTVFSY 396
             G      +Y
Sbjct: 501 DNGIIPDAVTY 511



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 148/297 (49%), Gaps = 9/297 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F+ M+ M+   P   +FN+L   L K        ++   +   G+ P + TYN L
Sbjct: 246 DAFRLFNEMV-MKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTL 304

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C +  V     VL  I R    P++ ++  +I G C    + EA  LF ++   G 
Sbjct: 305 MDGYCLVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGI 364

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP-NTVTYTTIIDGLCKEG 267
            P+ +TY++LI+GLC+ G    A  L +EM N        C P + VTY ++ID  CK  
Sbjct: 365 APHKVTYNSLIDGLCKAGRIPYAWELVDEMHNN-------CIPADIVTYNSLIDVFCKNQ 417

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VDKA  L  ++K+  I P++ TYN LI G C       A  +  +++ +G   +  T+N
Sbjct: 418 HVDKAIALVKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTYN 477

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++++ LCK G  DEA  LL  M   G+ P+  T+ T++           A++L   M
Sbjct: 478 IMINGLCKEGLFDEAEVLLSKMEDNGIIPDAVTYETIIQALFHKDENEKAQKLLREM 534



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 146/291 (50%), Gaps = 14/291 (4%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ +   L K K       L+  +    + P + T++ LI  FC +G+    F +   ++
Sbjct: 196 YSTIIDGLCKDKLVTDAYGLYSEMIVKRIPPTVVTFSSLIYGFCIVGKFKDAFRLFNEMV 255

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PDA  F  L+  LC E +I EA  +   +   G +P V+TY+TL++G C      
Sbjct: 256 MKNINPDAYTFNILVDALCKEGKIKEAKNVIAVMMKEGVEPTVVTYNTLMDGYC------ 309

Query: 230 VALNLFEEMANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
               L  E+        ++ +    PN+ +Y  +I+G CK   VD+A  LF +M  + I 
Sbjct: 310 ----LVNEVGKAKHVLSIISRMRVAPNSRSYNIMINGFCKIKMVDEALCLFHEMCCRGIA 365

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P  VTYNSLI G C A     A  L+ EM +  +  D+VT+N ++D  CKN  +D+A  L
Sbjct: 366 PHKVTYNSLIDGLCKAGRIPYAWELVDEMHNNCIPADIVTYNSLIDVFCKNQHVDKAIAL 425

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ +   G+ PN  T++ L+DG C  G++ +A+++F  +   G     ++Y
Sbjct: 426 VKKIKEHGIQPNMCTYNILIDGLCKGGQLKNAQDVFQDLLIKGYNVNAWTY 476


>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
          Length = 1001

 Score =  208 bits (530), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 112/303 (36%), Positives = 172/303 (56%), Gaps = 20/303 (6%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F+ ML+M P PP    F  L   +AK KHY TVLSL  +++S G+ PD+YT 
Sbjct: 561 TLDDALSSFNRMLHMHP-PPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTL 619

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NILIN FC + R+ + F VL ++L+  F PD V + +L+ GLC             K+  
Sbjct: 620 NILINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLC-------------KMIT 666

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P++ TY++LI+ LC          L  EM N          PN V ++T++D LCK
Sbjct: 667 KGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK------IMPNVVVFSTVVDALCK 720

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG +  A ++   M  + + PDVVTY +L+ G C  ++ +EA  +   M+ +G  P+V +
Sbjct: 721 EGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRS 780

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N++++  C+  +MD+A  LLE M L+G+  +T T++TL+ G C  GR+ HA  LF  M 
Sbjct: 781 YNILINGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMV 840

Query: 386 SMG 388
           + G
Sbjct: 841 ASG 843



 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 42/311 (13%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T +EA   F+ ML+ +P PP    FN L   +AKTKH+ T+LSL ++++S G+ PD+YT 
Sbjct: 25  TLDEALSTFNRMLHKQP-PPSTVDFNRLLTSIAKTKHHSTLLSLSRQMDSFGIPPDVYTL 83

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN                                    LC  +R+  A +   K+  
Sbjct: 84  AIVIN-----------------------------------SLCHLNRVDFAFSALAKILK 108

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+  T++TLI GLC  G    AL+LF++M       G   +PN VTY T+I+GLCK
Sbjct: 109 LGHQPDATTFTTLIRGLCVEGKIGEALHLFDKM------IGEGFQPNVVTYGTLINGLCK 162

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  V +A  +F +M  K I+P++VTYNSLIHG C   +W     L+ EM+D  + PDV T
Sbjct: 163 DRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT 222

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N ++D LCK G + EA  ++++MI RGV PN  T++ LMDG CL   V+ A ++F +M 
Sbjct: 223 LNTVVDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMV 282

Query: 386 SMGCKHTVFSY 396
              C   V SY
Sbjct: 283 HKDCVANVISY 293



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 166/308 (53%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+      P + ++  L   L K +      ++F  + + G+ P++ TYN L
Sbjct: 133 EALHLFDKMIG-EGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITKGISPNIVTYNSL 191

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK+    H   ++  ++ S   PD     +++  LC E  + EA  +   +   G 
Sbjct: 192 IHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMMIHRGV 251

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PNV+TY+ L++G C      VA+ +F+ M + +      C  N ++Y T+I+G CK   
Sbjct: 252 EPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKD------CVANVISYNTLINGYCKIQS 305

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VDKA  LF +M  + + P+ VTYN+LIHG C+     +A  L  EM+ +G  PD+VT+  
Sbjct: 306 VDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQIPDLVTYRT 365

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + D LCKN  +D+A  LL+ +     +P+   ++T++DG C  G +  A++LF ++ S G
Sbjct: 366 LSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKG 425

Query: 389 CKHTVFSY 396
            +  V++Y
Sbjct: 426 LQPNVWTY 433



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 152/301 (50%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF IF  M+    SP  + ++N L   L K   +  V +L   +  + + PD++T N +
Sbjct: 168 EAFNIFSEMITKGISPN-IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTV 226

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G V+    V+  ++     P+ V + +L+ G C  + +  A  +F  +    C
Sbjct: 227 VDALCKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDC 286

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             NVI+Y+TLING C+      A+ LFEEM+           PNTVTY T+I GLC  G 
Sbjct: 287 VANVISYNTLINGYCKIQSVDKAMYLFEEMSRQE------LTPNTVTYNTLIHGLCHVGR 340

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M  +   PD+VTY +L    C     ++A  LL  +      PD+  +  
Sbjct: 341 LQDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTT 400

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+D +C+ G++++A  L   +  +G+ PN  T++ ++ G C  G +  A +LF  M   G
Sbjct: 401 ILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 460

Query: 389 C 389
           C
Sbjct: 461 C 461



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M++ R   P + ++N L          D  + +F  +       ++ +YN L
Sbjct: 238 EAHDVVDMMIH-RGVEPNVVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTL 296

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK+  V     +   + R   TP+ V + +LI GLC   R+ +A +LF ++ A G 
Sbjct: 297 INGYCKIQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVARGQ 356

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TY TL + LC+  H   A+ L + +   N        P+   YTTI+DG+C+ G 
Sbjct: 357 IPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWD------PDIQIYTTILDGMCRAGE 410

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A++LF  +  K + P+V TYN +IHG C      EA+ L  EM   G  P+  T+N+
Sbjct: 411 LEDARDLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNL 470

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I     +N +      LLE M+ RG + + ST + L+      G     K++ 
Sbjct: 471 ITRGFLRNNEALRTIELLEEMLARGFSVDVSTTTLLVGMLSDDGLDQSVKQIL 523



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 147/282 (52%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L     +  V +L   + ++ + P++  ++ +++  CK G ++    V
Sbjct: 671 PDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDV 730

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +++    PD V +T+L+ G C  S + EA  +F  +   GC PNV +Y+ LING C+
Sbjct: 731 VDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQ 790

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L E+M+      G++   +TVTY T+I GLC  G +  A  LF +M     
Sbjct: 791 IQRMDKAMGLLEQMSLQ----GLIA--DTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQ 844

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY  L+   C  +   EA  LL  +    +  D++ +N+ +D +C+ G+++ A  
Sbjct: 845 IPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAARD 904

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           L   +  +G+ P+  T++ ++ G C  G ++ A +LF  M+ 
Sbjct: 905 LFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDE 946



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/230 (34%), Positives = 120/230 (52%), Gaps = 19/230 (8%)

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R+L     P  V FT L+  +          +L T++ +FG  P+V T + LIN  C   
Sbjct: 571 RMLHMHPPPSTVDFTKLLTSIAKMKHYSTVLSLSTQMDSFGIPPDVYTLNILINSFCHLR 630

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A ++  ++     K G   +P+ VTY T+++GLCK             M  K I+P
Sbjct: 631 RLGYAFSVLAKLL----KLGF--QPDVVTYGTLMNGLCK-------------MITKGISP 671

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+ TYNSLIH  C   +W     LL EM++  + P+VV F+ ++D LCK G +  A  ++
Sbjct: 672 DIFTYNSLIHALCNLCEWKHVTTLLNEMVNSKIMPNVVVFSTVVDALCKEGMIAIAHDVV 731

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++MI RGV P+  T++ LMDG CL   ++ A ++F +M   GC   V SY
Sbjct: 732 DMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSY 781



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 69/230 (30%), Positives = 118/230 (51%), Gaps = 7/230 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M+     P  +T   L+ G   +++  D  + +F  +   G  P++ +YNILI
Sbjct: 727 AHDVVDMMIKRGVEPDVVTYTALMDGHCLRSE-MDEAVKVFDTMVHKGCVPNVRSYNILI 785

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +C++ R+     +L ++       D V + +LI GLC   R+  A ALF ++ A G  
Sbjct: 786 NGYCQIQRMDKAMGLLEQMSLQGLIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQI 845

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TY  L++ LC+  H   A+ L + +   N         + + Y   IDG+C+ G +
Sbjct: 846 PDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSN------LDADILVYNIAIDGMCRAGEL 899

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + A++LF  +  K + PDV TYN +IHG C     +EAN L  +M +  +
Sbjct: 900 EAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENDI 949


>gi|242058301|ref|XP_002458296.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
 gi|241930271|gb|EES03416.1| hypothetical protein SORBIDRAFT_03g030790 [Sorghum bicolor]
          Length = 1035

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 122/350 (34%), Positives = 184/350 (52%), Gaps = 22/350 (6%)

Query: 59  TVKDR-ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
            V+DR   LE+ + +R +S   G        +A  +FD +L     P  + +FN L   +
Sbjct: 7   AVRDRCLELERVIADRARSGSLG------LGDALKLFDELLP-HARPASVVAFNHLLAAV 59

Query: 118 AK-------TKHYDTVLSLFKRLNS---TGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           ++       T   +TV+SLF R+       + P+  TY+ILI CFC+MG + HGF   G 
Sbjct: 60  SRSSGRRSTTSESETVVSLFNRMVRDCYIKVAPNRCTYSILIGCFCRMGHLEHGFAAFGL 119

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           IL++ +  D +    L+ GLC   R+ EA   L  ++   GC P+ ++Y+ L+ GLC   
Sbjct: 120 ILKTGWRMDHIVINQLLNGLCDGKRVGEAMDVLLQRMPELGCMPDTVSYNILLKGLCNEK 179

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L   MA+        C PN V+Y+T+I+G   EG VDK   LFL+M D+ I P
Sbjct: 180 RAEEALELLHMMADDQV---WSCPPNVVSYSTVINGFFTEGQVDKPYNLFLEMMDRGIPP 236

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTY ++I G C A  ++ A  +  +M+D GV+P++ T+N ++      GK  E  R+L
Sbjct: 237 DVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNCLIHGYLSIGKWKEVVRML 296

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E M   G  PN  T+ +L++  C  GR   A+  F SM   G K +V +Y
Sbjct: 297 EEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKGIKPSVTTY 346



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 158/322 (49%), Gaps = 41/322 (12%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+ F   AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    V   +++
Sbjct: 381 FNIFFSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMI 440

Query: 170 RSCFTPDAVAFTSLIKGLCA-----------------------------------ESRIM 194
               TPD V F+SL+ GLC                                    E R+M
Sbjct: 441 NEGVTPDIVVFSSLVYGLCTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVM 500

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           E   L   ++  G +P+VI+Y+TLI+G C  G    A  L E M +      V  KP++ 
Sbjct: 501 EGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS------VGLKPDSF 554

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           +Y T++ G CK G +D A   F +M    I P VVTYN+++HG      ++EA  L + M
Sbjct: 555 SYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNM 614

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           ++ G + D+ T+N+I++ LCK+  +DEA ++ + +  +G+  N  TF+ ++      GR 
Sbjct: 615 INSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRK 674

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +LF ++ + G    V +Y
Sbjct: 675 EDAMDLFAAIPANGLVQNVVTY 696



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 174/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ + +F  M++ R  PP + ++  +   L K + +D   ++F+++   G+ P++ TYN 
Sbjct: 220 DKPYNLFLEMMD-RGIPPDVVTYTTVIDGLCKAQLFDRAEAVFQQMIDNGVKPNIDTYNC 278

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +  +G+      +L  +      P+   + SL+  LC   R  EA   F  +   G
Sbjct: 279 LIHGYLSIGKWKEVVRMLEEMSAGGPKPNCCTYGSLLNYLCKNGRCREARFFFDSMIGKG 338

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVAL----------NLFEEMANGNGKFGVVCK-- 250
            KP+V TY  +++G    G     H ++ L          ++F    +   K G++ K  
Sbjct: 339 IKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGIIDKAM 398

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V+Y  +ID LCK G VD A+  F QM ++ + PD+V ++SL++G 
Sbjct: 399 DIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPDIVVFSSLVYGL 458

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W +   L  EM++ G+ P++V FN I+  LCK G++ E  RL++ +   GV P+ 
Sbjct: 459 CTVDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDV 518

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++TL+DG CL G ++ A +L   M S+G K   FSY
Sbjct: 519 ISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSY 556



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   FD M+  +   P +T++ ++    A       +  L   + + G+ P+ + +NI 
Sbjct: 326 EARFFFDSMIG-KGIKPSVTTYGIMLHGYATKGALSEMHDLLNLMVANGISPNHHIFNIF 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            + + K G +     +  ++ +   +PDAV++ +LI  LC   R+ +A   F ++   G 
Sbjct: 385 FSAYAKCGIIDKAMDIFNKMRQQGLSPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGV 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++ +S+L+ GLC          LF EM N      V   PN V + TI+  LCKEG 
Sbjct: 445 TPDIVVFSSLVYGLCTVDKWEKVEELFFEMLN------VGIHPNIVFFNTILCNLCKEGR 498

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V + + L   ++   + PDV++YN+LI G C A   +EA+ LL  M+  G++PD  ++N 
Sbjct: 499 VMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVGLKPDSFSYNT 558

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CK G++D A      M+  G+ P   T++T++ G   T R + AKEL+++M + G
Sbjct: 559 LLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 618

Query: 389 CKHTVFSY 396
            K  +++Y
Sbjct: 619 TKWDIYTY 626



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 146/319 (45%), Gaps = 30/319 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P  +   +L++G L     ++ V  LF  + + G+ P++  +N 
Sbjct: 430 DDAEVKFNQMINEGVTPDIVVFSSLVYG-LCTVDKWEKVEELFFEMLNVGIHPNIVFFNT 488

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   CK GRV  G  ++  I      PD +++ +LI G C    I EA+ L   + + G
Sbjct: 489 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 548

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC------------------ 249
            KP+  +Y+TL++G C+ G    A + F +M +     GVV                   
Sbjct: 549 LKPDSFSYNTLLHGYCKAGRIDSAYSHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 608

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      K +  TY  I++GLCK   VD+A ++F  +  K +  +++T+N +I   
Sbjct: 609 ELYLNMINSGTKWDIYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGAL 668

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                  +A  L   +   G+  +VVT+ ++++ L + G ++E   L   M   G  PN+
Sbjct: 669 LKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNS 728

Query: 359 STFSTLMDGFCLTGRVNHA 377
              + L+      G ++ A
Sbjct: 729 QMLNALVRRLLHRGDISRA 747



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 127/278 (45%), Gaps = 10/278 (3%)

Query: 105 PPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P + S+N L    CLA T   D    L + + S GL PD ++YN L++ +CK GR+   +
Sbjct: 516 PDVISYNTLIDGHCLAGT--IDEASKLLEGMVSVGLKPDSFSYNTLLHGYCKAGRIDSAY 573

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
               ++L +  TP  V + +++ GL    R  EA  L+  +   G K ++ TY+ ++NGL
Sbjct: 574 SHFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWDIYTYNIILNGL 633

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C++     A+ +F+ + +   +       N +T+  +I  L K G  + A +LF  +   
Sbjct: 634 CKSNCVDEAIKMFQNLCSKGLQL------NIITFNIMIGALLKGGRKEDAMDLFAAIPAN 687

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            +  +VVTY  ++          E + L   M   G  P+    N ++  L   G +  A
Sbjct: 688 GLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 747

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
              L  +  R  +   ST S L+  F      +HAK L
Sbjct: 748 GAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSL 785



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 75/318 (23%), Positives = 142/318 (44%), Gaps = 34/318 (10%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N++   L K+   D  + +F+ L S GL  ++ T+NI+I    K GR      +  
Sbjct: 623 IYTYNIILNGLCKSNCVDEAIKMFQNLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 682

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            I  +    + V +  +++ L  E  + E  +LF+ ++  G  PN    + L+  L   G
Sbjct: 683 AIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRG 742

Query: 227 HTIVALNLFEEMANGN----------------------------GKFGVVCKPNTVTYTT 258
               A     ++   N                             K+ ++ + N+     
Sbjct: 743 DISRAGAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIK 802

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
                 K   +D A  LF +M  K + PDVVTYN+++HG      ++EA  L + M++  
Sbjct: 803 ------KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSR 856

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            Q ++ T+N+I++ LCK+  +DEA ++ + +  +G+  N  TF+ ++      GR   A 
Sbjct: 857 TQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAM 916

Query: 379 ELFVSMESMGCKHTVFSY 396
           +LF ++ + G    V +Y
Sbjct: 917 DLFAAIPANGLVPDVVTY 934



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 136/310 (43%), Gaps = 34/310 (10%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + +FN++ G L K    +  + LF  + + GL  ++ TY +++    + G +     +  
Sbjct: 658 IITFNIMIGALLKGGRKEDAMDLFAAIPANGLVQNVVTYRLVVENLIEEGSLEEFDSLFS 717

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN------ 220
            + ++   P++    +L++ L     I  A A  +KL          T S LI+      
Sbjct: 718 AMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSMLISIFSSDE 777

Query: 221 ---------------------GLCRTGHTIV-ALNLFEEMANGNGKFGVVCKPNTVTYTT 258
                                 L +    I  A +LF EM            P+ VTY T
Sbjct: 778 YQHHAKSLPKKYRILNEANSSALIKKARRIDDAYSLFREMLMKG------LTPDVVTYNT 831

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I+ GL + G   +AKEL+L M +     ++ TYN +++G C +N  +EA  +   +  +G
Sbjct: 832 ILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 891

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +Q +++TFN+++  L K G+ ++A  L   +   G+ P+  T+  + +     G +    
Sbjct: 892 LQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFD 951

Query: 379 ELFVSMESMG 388
            LF++ME  G
Sbjct: 952 GLFLTMEKSG 961



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/299 (23%), Positives = 128/299 (42%), Gaps = 34/299 (11%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++ L+   L +    +   SLF  +   G  P+    N L+      G +S     L 
Sbjct: 693 VVTYRLVVENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLS 752

Query: 167 RILRSCFTPDAVAFTSLI------------KGLCAESRIM----------------EAAA 198
           ++    F+ +A   + LI            K L  + RI+                +A +
Sbjct: 753 KLDERNFSVEASTTSMLISIFSSDEYQHHAKSLPKKYRILNEANSSALIKKARRIDDAYS 812

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF ++   G  P+V+TY+T+++GL +TG    A  L+  M N   +       N  TY  
Sbjct: 813 LFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQM------NIYTYNI 866

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I++GLCK   VD+A ++F  +  K +  +++T+N +I          +A  L   +   G
Sbjct: 867 ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           + PDVVT+ ++ + L + G ++E   L   M   G   ++   + L+      G ++ A
Sbjct: 927 LVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRLLQRGDISRA 985



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 97/227 (42%), Gaps = 6/227 (2%)

Query: 154  KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
            K  R+   + +   +L    TPD V + +++ GL    R  EA  L+  +     + N+ 
Sbjct: 803  KARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIY 862

Query: 214  TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            TY+ ++NGLC++     A  +F+ + +   +       N +T+  +I  L K G  + A 
Sbjct: 863  TYNIILNGLCKSNCVDEAFKMFQSLCSKGLQL------NIITFNIMIGALLKGGRKEDAM 916

Query: 274  ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            +LF  +    + PDVVTY  +           E + L + M   G   D    N ++  L
Sbjct: 917  DLFAAIPANGLVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVRRL 976

Query: 334  CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             + G +  A   L  +  +  +   ST S L+  F      +HAK L
Sbjct: 977  LQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSL 1023



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/196 (27%), Positives = 93/196 (47%), Gaps = 8/196 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           + K +  D   SLF+ +   GL PD+ TYN +++   + GR S    +   ++ S    +
Sbjct: 801 IKKARRIDDAYSLFREMLMKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMN 860

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              +  ++ GLC  + + EA  +F  L + G + N+IT++ +I  L + G    A++LF 
Sbjct: 861 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFA 920

Query: 237 EM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            + ANG         P+ VTY  + + L +EG +++   LFL M+      D    N+L+
Sbjct: 921 AIPANG-------LVPDVVTYRLVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALV 973

Query: 296 HGFCYANDWNEANCLL 311
                  D + A   L
Sbjct: 974 RRLLQRGDISRAGAYL 989



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 19/229 (8%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            ++A+ +F  ML M+   P + ++N +   L +T  +     L+  + ++    ++YTYNI
Sbjct: 808  DDAYSLFREML-MKGLTPDVVTYNTILHGLFQTGRFSEAKELYLSMINSRTQMNIYTYNI 866

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            ++N  CK   V   F +   +       + + F  +I  L    R  +A  LF  + A G
Sbjct: 867  ILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFNIMIGALLKGGRKEDAMDLFAAIPANG 926

Query: 208  CKPNVITYSTLINGLCRTGHTIVALNLFEE--MANGNGKFGVVCKPNTVTYTTIIDGLCK 265
              P+V+TY             +VA NL EE  +   +G F  + K  T   + +++ L +
Sbjct: 927  LVPDVVTYR------------LVAENLIEEGSLEEFDGLFLTMEKSGTPLDSRLLNALVR 974

Query: 266  ----EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
                 G + +A     ++ +KN + +  T + LI  F      + A  L
Sbjct: 975  RLLQRGDISRAGAYLSKLDEKNFSLEASTTSELISLFSRGEYQHHAKSL 1023


>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
 gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
          Length = 1031

 Score =  208 bits (529), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 108/295 (36%), Positives = 166/295 (56%), Gaps = 7/295 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           PSP  + ++N +     +    D  L   K +N   + PD++TYNILI+  CK  +    
Sbjct: 222 PSPDAI-AYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKA 280

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  ++    TPD V F S++ GLC   +   A +L   +    C+P+  TY+TLI+G
Sbjct: 281 SEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISG 340

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+  +   A +L +E  +     G V  P+ VTY+ + DGLCK G +D+A EL  +M  
Sbjct: 341 LCKQQNVDRAKDLVDEFVSS----GFV--PDVVTYSILADGLCKRGRIDEAFELVKEMSG 394

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K   P++VTYN+LI G C A+   +A  LL  ++  G  PDVVT+ +I+D LCK G++D+
Sbjct: 395 KGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDK 454

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A +++E M+ RG  P+  T++ LM+G C TGRV+ A  +F  M S  C     +Y
Sbjct: 455 ALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAY 509



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/304 (33%), Positives = 160/304 (52%), Gaps = 11/304 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ ML+   +P   T ++L+   L +    D   ++  +    G  P++  Y IL   F
Sbjct: 147 MFERMLDAGYAPDSYT-YHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAF 205

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+         I R+  +PDA+A+ ++I G C ++    A     ++      P+V
Sbjct: 206 CKTGRLKDAL----EIFRNIPSPDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDV 261

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+ LI+GLC+   T  A  +  EM +     GV   P+TVT+ +I+DGLCK G  ++A
Sbjct: 262 FTYNILIDGLCKASKTDKASEMLHEMVDR----GVT--PDTVTFNSIMDGLCKAGKFERA 315

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L   M ++N  P   TYN+LI G C   + + A  L+ E +  G  PDVVT++++ D 
Sbjct: 316 HSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADG 375

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK G++DEA  L++ M  +G  PN  T++TL+DG C   +   A EL  S+ S G    
Sbjct: 376 LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPD 435

Query: 393 VFSY 396
           V +Y
Sbjct: 436 VVTY 439



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 167/328 (50%), Gaps = 27/328 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +   M + +   P L ++N L   L K    +    L + L S+G  PD+ TY I
Sbjct: 383 DEAFELVKEM-SGKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTI 441

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  CK GR+     ++  +L+   TP  + +T+L++GLC   R+ EA  +F ++ +  
Sbjct: 442 IVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKD 501

Query: 208 CKPNVITYSTLINGLCRTGHTIVA------------LNLFEEMANGNGKFGVV------- 248
           C  + + Y +L+NG C++  T  A            ++++  + +G  K G +       
Sbjct: 502 CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVF 561

Query: 249 -------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C PN  TY  ++DGLCK G VD+A      M      PDVV+YN +I G   A
Sbjct: 562 EDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKA 621

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           +   EA  +L +M+  G+ PD VT+N +M + CK  + D+A  +L+ MI  GV+P+  T+
Sbjct: 622 SKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTY 681

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGC 389
           +TL+ G   T R+  A EL   M   GC
Sbjct: 682 NTLISGLSQTNRLGDAYELMHEMLRNGC 709



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 154/292 (52%), Gaps = 9/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    D    L K ++  G  P+L TYN LI+  CK  +    + +
Sbjct: 364 PDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLIDGLCKASKTEKAYEL 423

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S F PD V +T ++ GLC E R+ +A  +   +   GC P+VITY+ L+ GLCR
Sbjct: 424 LESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 483

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           TG    A ++F+EM + +      C  + + Y ++++G CK     +A+++   ++    
Sbjct: 484 TGRVDEAHHIFKEMVSKD------CTADALAYVSLVNGYCKSSRTKEAQKVVDGIRG--- 534

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +  YN+L+ G+C     +E   +  +M  +G  P++ T+N++MD LCK+GK+DEA  
Sbjct: 535 TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFP 594

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LE M   G  P+  +++ ++DG     +   A+++   M   G      +Y
Sbjct: 595 FLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTY 646



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/283 (30%), Positives = 145/283 (51%), Gaps = 6/283 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N R   P + ++N+L   L K    D    +   +   G+ PD  T+N +++  CK G+
Sbjct: 252 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
                 +L  +      P    + +LI GLC +  +  A  L  +  + G  P+V+TYS 
Sbjct: 312 FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSI 371

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L +GLC+ G    A  L +EM+ G G     C PN VTY T+IDGLCK    +KA EL  
Sbjct: 372 LADGLCKRGRIDEAFELVKEMS-GKG-----CTPNLVTYNTLIDGLCKASKTEKAYELLE 425

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            +      PDVVTY  ++ G C     ++A  ++  M+ +G  P V+T+  +M+ LC+ G
Sbjct: 426 SLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 485

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++DEA  + + M+ +    +   + +L++G+C + R   A+++
Sbjct: 486 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKV 528



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 138/280 (49%), Gaps = 10/280 (3%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L + K   T +  F      G     +T N  +    + G       +  R+L + + PD
Sbjct: 100 LQRLKDPQTAIVFFVWAGDRGFKHSTFTRNCFLQTLLENGSSDRIPAMFERMLDAGYAPD 159

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           +  +  +IK LC  ++I +A  +  K K  G KP V  Y+ L    C+TG    AL +F 
Sbjct: 160 SYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTILTRAFCKTGRLKDALEIFR 219

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            + +          P+ + Y  II G C++   D A E   +M ++ + PDV TYN LI 
Sbjct: 220 NIPS----------PDAIAYNAIIHGHCRKNDCDGALEFLKEMNERKVAPDVFTYNILID 269

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C A+  ++A+ +L EM+D+GV PD VTFN IMD LCK GK + A  LL +M  R   P
Sbjct: 270 GLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRP 329

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  T++TL+ G C    V+ AK+L     S G    V +Y
Sbjct: 330 SCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTY 369



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 148/297 (49%), Gaps = 9/297 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N++   L K    D      + ++S G  PD+ +YNI+I+   K  +   
Sbjct: 567 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 626

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              VL +++++   PDAV + +L+   C E R  +A  +   +   G  P+ +TY+TLI+
Sbjct: 627 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 686

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GL +T     A  L  EM   NG     C     TY TIID LCKEG + +A  L   M 
Sbjct: 687 GLSQTNRLGDAYELMHEMLR-NGCVVSAC----TTYNTIIDRLCKEGCLKQALLLMDHMT 741

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  + VTYN  I   C     +EA+ LL EM       D V++  ++  LCK  ++D
Sbjct: 742 GHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLD 798

Query: 341 EASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            AS+L  E++ ++G+   + TF+ L+D F  T R++ A  L   M   GC  +V +Y
Sbjct: 799 RASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSPSVITY 855



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 150/336 (44%), Gaps = 46/336 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + + ML  R   P + ++  L   L +T   D    +FK + S     D   Y  
Sbjct: 453 DKALKMVEGMLK-RGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVS 511

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK  R      V+  I     TP    + +L+ G C E R+ E   +F  +   G
Sbjct: 512 LVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRG 568

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ TY+ +++GLC+ G    A    E M +        C P+ V+Y  IIDGL K  
Sbjct: 569 CVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG------CVPDVVSYNIIIDGLFKAS 622

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV--- 324
              +A+++  QM    I PD VTYN+L+  FC    +++A  +L  M+  GV PD V   
Sbjct: 623 KPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYN 682

Query: 325 ---------------------------------TFNVIMDELCKNGKMDEASRLLELMIL 351
                                            T+N I+D LCK G + +A  L++ M  
Sbjct: 683 TLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALLLMDHMTG 742

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            GV  NT T++  +D  C  GR++ A  L   M+++
Sbjct: 743 HGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTL 778



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 153/313 (48%), Gaps = 12/313 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G   A  P EA  + D M+     PP   ++N L     K + +D  + + K +   G+ 
Sbjct: 617 GLFKASKPKEARQVLDQMIQA-GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD 675

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAA 198
           PD  TYN LI+   +  R+   + ++  +LR+ C       + ++I  LC E  + +A  
Sbjct: 676 PDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQALL 735

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L   +   G + N +TY+  I+ LC+ G    A +L  EM             + V+YTT
Sbjct: 736 LMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---------DEVSYTT 786

Query: 259 IIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           +I GLCK   +D+A +L  +M   K +     T+N LI  F      +EA  LL  M+ +
Sbjct: 787 VIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQR 846

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P V+T+N+++  LCK  K+D+A  L + M +RG+  ++ +++ L+ G C  GR   A
Sbjct: 847 GCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEA 906

Query: 378 KELFVSMESMGCK 390
            ++   M S  C+
Sbjct: 907 LQVLEEMASSDCE 919


>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g41170, mitochondrial; Flags: Precursor
 gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
 gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 527

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 176/309 (56%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F +M+  RP P  +  F  L   +AK K +D V++L   L   G+  DLYT N+
Sbjct: 54  NEALDLFTHMVESRPLPS-IIDFTKLLNVIAKMKKFDVVINLCDHLQIMGVSHDLYTCNL 112

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+NCFC+  +       LG++++  F PD V FTSLI G C  +R+ EA ++  ++   G
Sbjct: 113 LMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAMSMVNQMVEMG 172

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V+ Y+T+I+ LC+ GH   AL+LF++M N    +G+  +P+ V YT++++GLC  G
Sbjct: 173 IKPDVVMYTTIIDSLCKNGHVNYALSLFDQMEN----YGI--RPDVVMYTSLVNGLCNSG 226

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A  L   M  + I PDV+T+N+LI  F     + +A  L  EM+   + P++ T+ 
Sbjct: 227 RWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYT 286

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  C  G +DEA ++  LM  +G  P+   +++L++GFC   +V+ A ++F  M   
Sbjct: 287 SLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQK 346

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 347 GLTGNTITY 355



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/312 (32%), Positives = 165/312 (52%), Gaps = 10/312 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +FD M N    P  +   +L+ G L  +  +    SL + +    + PD+ T+N 
Sbjct: 194 NYALSLFDQMENYGIRPDVVMYTSLVNG-LCNSGRWRDADSLLRGMTKRKIKPDVITFNA 252

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G+      +   ++R    P+   +TSLI G C E  + EA  +F  ++  G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+ Y++LING C+      A+ +F EM+   G  G     NT+TYTT+I G  + G
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIFYEMSQ-KGLTG-----NTITYTTLIQGFGQVG 366

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ---GVQPDVV 324
             + A+E+F  M  + + P++ TYN L+H  CY     +A  +  +M  +   GV P++ 
Sbjct: 367 KPNVAQEVFSHMVSRGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDGVAPNIW 426

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+NV++  LC NGK+++A  + E M  R ++    T++ ++ G C  G+V +A  LF S+
Sbjct: 427 TYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAVNLFCSL 486

Query: 385 ESMGCKHTVFSY 396
            S G K  V +Y
Sbjct: 487 PSKGVKPNVVTY 498



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 86/163 (52%), Gaps = 4/163 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-- 136
           QG      PN A  +F +M++ R  PP + ++N+L  CL         L +F+ +     
Sbjct: 360 QGFGQVGKPNVAQEVFSHMVS-RGVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREM 418

Query: 137 -GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            G+ P+++TYN+L++  C  G++    +V   + +       + +T +I+G+C   ++  
Sbjct: 419 DGVAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKN 478

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           A  LF  L + G KPNV+TY+T+I+GL R G    A  LF +M
Sbjct: 479 AVNLFCSLPSKGVKPNVVTYTTMISGLFREGLKHEAHVLFRKM 521


>gi|32527606|gb|AAP86200.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
          Length = 654

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 120/347 (34%), Positives = 191/347 (55%), Gaps = 21/347 (6%)

Query: 58  LTVKDRASLEQFLKERCK-SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           L  K R     F  E  K  SG  +I  +   +A  +F  M+  RP P  +  F  L G 
Sbjct: 31  LAKKSRDGESGFGGESLKLRSGFHEIKGL--EDAIDLFGDMVRSRPLPS-VIDFCKLMGV 87

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           + +    D V+SL +++    +  + Y++ IL+ CFC   ++       G+I +  F P 
Sbjct: 88  VVRMGRLDVVISLHRKMEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPT 147

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V F++L+ GLC E RI EA  LF ++    CKPNV+T++TL+NGLCR G  + A+ L +
Sbjct: 148 VVTFSTLLHGLCVEDRISEALDLFHQM----CKPNVVTFTTLMNGLCREGRVVEAVALLD 203

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-KNINPDVVTY---- 291
            M           +PN +TY TI+DG+CK G    A  L  +M++  +I P+VV +    
Sbjct: 204 RMLEDG------LQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLER 257

Query: 292 -NSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
              +I+GFC +  W+EA  LL EM++ + + PDVVT+N +++   K GK  EA  L + M
Sbjct: 258 RTCMINGFCSSGRWSEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEM 317

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + RG+ P+T T+S+++DGFC   R++ A+ +F  M + GC   + ++
Sbjct: 318 LPRGIIPSTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPDIITF 364



 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/323 (32%), Positives = 161/323 (49%), Gaps = 23/323 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   ML  +   P + ++N L     K   +     L+  +   G+ P   TY+ 
Sbjct: 272 SEAQQLLQEMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSS 331

Query: 148 LINCFCKMGRV---SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           +I+ FCK  R+    H F ++    + C +PD + F +LI G C   R+ +   L  ++ 
Sbjct: 332 MIDGFCKQNRLDAAEHMFYLMAT--KGC-SPDIITFNTLIAGYCRAKRVDDGIKLLHEMT 388

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G   N ITY+TLI+G C+ G    A +L +EM +       VC PN VT  T++DGLC
Sbjct: 389 EAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSG-----VC-PNVVTCNTLLDGLC 442

Query: 265 KEGFVDKAKELFLQMKDK-----------NINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
             G +  A E+F  M+              + PDV TYN LI G      + EA  L  E
Sbjct: 443 DNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLINEGKFLEAEELYEE 502

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  +G+ PD +T+N ++  LCK  ++DEA+++ + M  +  +PN  TF+TL++G+C  GR
Sbjct: 503 MPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGR 562

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           V+   ELF  M   G      +Y
Sbjct: 563 VDDGLELFCEMGRRGIVANAITY 585



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 164/327 (50%), Gaps = 40/327 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + MR  P    SF +L  C          LS F ++   G  P + T++ L++  C   R
Sbjct: 104 MEMRRVPCNAYSFTILMKCFCSCSKLPFALSTFGKITKLGFHPTVVTFSTLLHGLCVEDR 163

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +S    +  ++ +    P+ V FT+L+ GLC E R++EA AL  ++   G +PN ITY T
Sbjct: 164 ISEALDLFHQMCK----PNVVTFTTLMNGLCREGRVVEAVALLDRMLEDGLQPNQITYGT 219

Query: 218 LINGLCRTGHTIVALNLFEEMA---------------------NG---NGKFGVVCK--- 250
           +++G+C+ G T+ ALNL  +M                      NG   +G++    +   
Sbjct: 220 IVDGMCKMGDTVSALNLLRKMEEVSHIKPNVVIWPLERRTCMINGFCSSGRWSEAQQLLQ 279

Query: 251 ---------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                    P+ VTY  +I+   KEG   +A+EL+ +M  + I P  +TY+S+I GFC  
Sbjct: 280 EMLERKKISPDVVTYNALINAFVKEGKFFEAEELYDEMLPRGIIPSTITYSSMIDGFCKQ 339

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           N  + A  +   M  +G  PD++TFN ++   C+  ++D+  +LL  M   G+  NT T+
Sbjct: 340 NRLDAAEHMFYLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITY 399

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMG 388
           +TL+ GFC  G +N A++L   M S G
Sbjct: 400 TTLIHGFCQVGDLNAAQDLLQEMVSSG 426



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/306 (32%), Positives = 158/306 (51%), Gaps = 8/306 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D ML     P  +T  +++ G   K    D    +F  + + G  PD+ T+N L
Sbjct: 309 EAEELYDEMLPRGIIPSTITYSSMIDG-FCKQNRLDAAEHMFYLMATKGCSPDIITFNTL 367

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +C+  RV  G  +L  +  +    + + +T+LI G C    +  A  L  ++ + G 
Sbjct: 368 IAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQVGDLNAAQDLLQEMVSSGV 427

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDG 262
            PNV+T +TL++GLC  G    AL +F+ M       + +  F  V +P+  TY  +I G
Sbjct: 428 CPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGV-EPDVQTYNILISG 486

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  EG   +A+EL+ +M  + I PD +TYNS+IHG C  +  +EA  +   M  +   P+
Sbjct: 487 LINEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPN 546

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVTF  +++  CK G++D+   L   M  RG+  N  T+ TL+ GF   G +N A ++F 
Sbjct: 547 VVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYITLIHGFRKVGNINGALDIFQ 606

Query: 383 SMESMG 388
            M + G
Sbjct: 607 EMMASG 612



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 149/284 (52%), Gaps = 17/284 (5%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  +   P + +FN L     + K  D  + L   +   GL  +  TY  LI+ FC++
Sbjct: 350 YLMATKGCSPDIITFNTLIAGYCRAKRVDDGIKLLHEMTEAGLVANTITYTTLIHGFCQV 409

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--------- 206
           G ++    +L  ++ S   P+ V   +L+ GLC   ++ +A  +F  ++           
Sbjct: 410 GDLNAAQDLLQEMVSSGVCPNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHP 469

Query: 207 --GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G +P+V TY+ LI+GL   G  + A  L+EEM +     G+V  P+T+TY ++I GLC
Sbjct: 470 FNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR----GIV--PDTITYNSVIHGLC 523

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  +D+A ++F  M  K+ +P+VVT+ +LI+G+C A   ++   L  EM  +G+  + +
Sbjct: 524 KQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAI 583

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           T+  ++    K G ++ A  + + M+  GV P+T T   ++ G 
Sbjct: 584 TYITLIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGL 627



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/228 (29%), Positives = 109/228 (47%), Gaps = 18/228 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-----------GLFPDLYTYNILINCFC 153
           P + + N L   L         L +FK +  +           G+ PD+ TYNILI+   
Sbjct: 429 PNVVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDIDASHPFNGVEPDVQTYNILISGLI 488

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+      +   +      PD + + S+I GLC +SR+ EA  +F  + +    PNV+
Sbjct: 489 NEGKFLEAEELYEEMPHRGIVPDTITYNSVIHGLCKQSRLDEATQMFDSMGSKSFSPNVV 548

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++TLING C+ G     L LF EM    G+ G+V   N +TY T+I G  K G ++ A 
Sbjct: 549 TFTTLINGYCKAGRVDDGLELFCEM----GRRGIVA--NAITYITLIHGFRKVGNINGAL 602

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQ 320
           ++F +M    + PD +T  +++ G     +   A  +L ++ M  G Q
Sbjct: 603 DIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQMSVGYQ 650



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M   +   P + +F  L     K    D  L LF  +   G+  +  TY  
Sbjct: 529 DEATQMFDSM-GSKSFSPNVVTFTTLINGYCKAGRVDDGLELFCEMGRRGIVANAITYIT 587

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI+ F K+G ++    +   ++ S   PD +   +++ GL ++  +  A A+   L+
Sbjct: 588 LIHGFRKVGNINGALDIFQEMMASGVYPDTITIRNMLTGLWSKEELKRAVAMLEDLQ 644


>gi|145336957|ref|NP_176459.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206054|sp|Q9SI78.1|PPR93_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62720
 gi|6630449|gb|AAF19537.1|AC007190_5 F23N19.8 [Arabidopsis thaliana]
 gi|62320514|dbj|BAD95075.1| PPR-repeat protein [Arabidopsis thaliana]
 gi|332195876|gb|AEE33997.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 485

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 108/314 (34%), Positives = 184/314 (58%), Gaps = 7/314 (2%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           +++   E   +F  M+  RP  P +  F+ +   +AK+K+YD V+SLF  +   G+  DL
Sbjct: 46  SSMNLEEEIDLFCKMIQSRP-LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDL 104

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           Y+YNI+INC C+  R      V+G++++  + PD V  +SLI G C  +R+ +A  L +K
Sbjct: 105 YSYNIVINCLCRCSRFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSK 164

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           ++  G +P+V+ Y+T+I+G C+ G    A+ LF+ M     + GV  + + VTY +++ G
Sbjct: 165 MEEMGFRPDVVIYNTIIDGSCKIGLVNDAVELFDRME----RDGV--RADAVTYNSLVAG 218

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LC  G    A  L   M  ++I P+V+T+ ++I  F     ++EA  L  EM  + V PD
Sbjct: 219 LCCSGRWSDAARLMRDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPD 278

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V T+N +++ LC +G++DEA ++L+LM+ +G  P+  T++TL++GFC + RV+   +LF 
Sbjct: 279 VFTYNSLINGLCMHGRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFR 338

Query: 383 SMESMGCKHTVFSY 396
            M   G      +Y
Sbjct: 339 EMAQRGLVGDTITY 352



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 152/301 (50%), Gaps = 10/301 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +FD M         +T +N L   L  +  +     L + +    + P++ T+  
Sbjct: 191 NDAVELFDRMERDGVRADAVT-YNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 249

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ F K G+ S    +   + R C  PD   + SLI GLC   R+ EA  +   +   G
Sbjct: 250 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 309

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+TLING C++        LF EMA   G  G     +T+TY TII G  + G
Sbjct: 310 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ-RGLVG-----DTITYNTIIQGYFQAG 363

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+E+F +M  +   P++ TY+ L++G C      +A  L   M    ++ D+ T+N
Sbjct: 364 RPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 420

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  +CK G +++A  L   +  +G+ P+  +++T++ GFC   + + +  L+  M+  
Sbjct: 421 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 480

Query: 388 G 388
           G
Sbjct: 481 G 481



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 9/257 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           MR   P + +F  +     K   +   + L++ +    + PD++TYN LIN  C  GRV 
Sbjct: 237 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 296

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +L  ++     PD V + +LI G C   R+ E   LF ++   G   + ITY+T+I
Sbjct: 297 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 356

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            G  + G    A  +F  M +         +PN  TY+ ++ GLC    V+KA  LF  M
Sbjct: 357 QGYFQAGRPDAAQEIFSRMDS---------RPNIRTYSILLYGLCMNWRVEKALVLFENM 407

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           +   I  D+ TYN +IHG C   +  +A  L   +  +G++PDVV++  ++   C+  + 
Sbjct: 408 QKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQW 467

Query: 340 DEASRLLELMILRGVNP 356
           D++  L   M   G+ P
Sbjct: 468 DKSDLLYRKMQEDGLLP 484


>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
 gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
          Length = 497

 Score =  207 bits (528), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 173/309 (55%), Gaps = 9/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  +F  ML+ R     + SFN+L   L +    +T L  F++++     P++ TY++
Sbjct: 62  ERAMALFQEMLDRRSHD--VISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSV 118

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  RVS    +L  +     +PD + +T L+ GLC ES++  A  +  ++   G
Sbjct: 119 LIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN++TY++L++GLCR      AL L  +M          C PN VTY T+IDGLCK G
Sbjct: 179 CVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG------CTPNVVTYGTLIDGLCKVG 232

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A  +   M DK   PD++ YN LI+G C A+  +E+  LL   +  G++PDVVT++
Sbjct: 233 RVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYS 292

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC++ ++DEA RLL  +  RG  P+   +STL+DG C  G+V+ A +L+  M   
Sbjct: 293 SVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGD 352

Query: 388 GCKHTVFSY 396
           GC   V +Y
Sbjct: 353 GCDADVVTY 361



 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 105/292 (35%), Positives = 163/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K       + L + + + G  PD+ TY IL++  CK  +V+  + V
Sbjct: 111 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 170

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L +   P+ V + SL+ GLC   R+ +A AL   +   GC PNV+TY TLI+GLC+
Sbjct: 171 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCK 230

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +  +M +  G       P+ + Y  +I+GLCK   VD++  L  +     I
Sbjct: 231 VGRVKDACAMLADMIDKGGT------PDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 284

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+S+I+G C +N  +EA  LL+ +  +G  PDV+ ++ ++D LCK GK+DEA  
Sbjct: 285 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 344

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E+M   G + +  T+STL+DG C  GRV+ A  L   M  MG   +  +Y
Sbjct: 345 LYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTY 396



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 145/269 (53%), Gaps = 7/269 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  L   L K        ++   +   G  PDL  YN+LIN  CK  +V  
Sbjct: 212 RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDE 271

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L R +     PD V ++S+I GLC  +R+ EA  L   +K+ GC P+VI YSTLI+
Sbjct: 272 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 331

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC+ G    A +L+E M  G+G     C  + VTY+T+IDGLCK G VD+A  L  +M 
Sbjct: 332 GLCKAGKVDEAFDLYEVM-TGDG-----CDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 385

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P  +TYNSLI G C  N  +EA  L+ EM      P  VT+N+++  +C+  ++D
Sbjct: 386 RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVD 445

Query: 341 EAS-RLLELMILRGVNPNTSTFSTLMDGF 368
            A+    + MI  GV P+  T+S L++G 
Sbjct: 446 SAALDYFQEMIDNGVIPDHITYSILLEGL 474



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 95/273 (34%), Positives = 147/273 (53%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L + +     L+L + +   G  P++ TY  LI+  CK+GRV     +
Sbjct: 181 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 240

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++    TPD + +  LI GLC   ++ E+ AL  +  + G KP+V+TYS++I GLCR
Sbjct: 241 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 300

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L   + +        C P+ + Y+T+IDGLCK G VD+A +L+  M     
Sbjct: 301 SNRLDEACRLLLYVKSRG------CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGC 354

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + DVVTY++LI G C A   +EA+ LL  M+  G  P  +T+N ++  LC    +DEA  
Sbjct: 355 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 414

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           L+E M      P+  T++ L+ G C   RV+ A
Sbjct: 415 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSA 447



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 147/299 (49%), Gaps = 43/299 (14%)

Query: 133 LNSTGLFPDLYTYNILINCFCK-------------MGRVS------------HGFVVLGR 167
           +   G  P++ TYN LI+  CK             M  V              G    G+
Sbjct: 1   MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60

Query: 168 ILRSCF---------TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           + R+           + D ++F  L+ GLC   +I  A   F K+    C PNVITYS L
Sbjct: 61  LERAMALFQEMLDRRSHDVISFNILVTGLCRAGKIETALEFFRKMDDR-CSPNVITYSVL 119

Query: 219 INGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           I+GLC+      A+ L E M A G       C P+ +TYT ++DGLCKE  V  A E+  
Sbjct: 120 IDGLCKANRVSQAVELLESMKARG-------CSPDVITYTILVDGLCKESKVAAAWEVLR 172

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M D    P++VTYNSL+HG C A   ++A  L+ +M  +G  P+VVT+  ++D LCK G
Sbjct: 173 EMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVG 232

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ +A  +L  MI +G  P+   ++ L++G C   +V+ +  L     S G K  V +Y
Sbjct: 233 RVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTY 291



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 95/179 (53%), Gaps = 7/179 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP +  ++ L   L K    D    L++ +   G   D+ TY+ LI+  CK GRV  
Sbjct: 317 RGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDE 376

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             ++L R++R    P  + + SLIKGLC  + + EA  L  +++   C P+ +TY+ LI+
Sbjct: 377 AHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIH 436

Query: 221 GLCRTGHT-IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           G+CR       AL+ F+EM +     GV+  P+ +TY+ +++GL K   + + + L L 
Sbjct: 437 GMCRMERVDSAALDYFQEMIDN----GVI--PDHITYSILLEGLKKSKDLHELRHLVLD 489


>gi|18071423|gb|AAL58282.1|AC068923_24 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 952

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 21/324 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + PDL TY
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  +A+ FT L+KGLCA+ R  +A  +   ++ 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+NGLC    +  AL L   MA+  G       P+ V+YTT+I+G  
Sbjct: 151 ELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGG---SPPDVVSYTTVINGFF 207

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN----DWN--------EANCLLI 312
           KEG  DKA   + +M D+ I PDVVTY+S+I   C        W+        E+  L  
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFD 267

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M+  GV+PD++T++ ++D  C  GKMDEA +LL  M+  G+ PNT T+STL++G+C   
Sbjct: 268 LMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 327

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           R+  A  LF  MES G    + +Y
Sbjct: 328 RMEDALVLFKEMESSGVSPDIITY 351



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL---NSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P + S+N L   L         L L   +      G  PD+ +Y  +IN F K G     
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCA------------ESRIMEAAALFTKLKAFGCK 209
           +     +L     PD V ++S+I  LC             E R++E+  LF  +   G K
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVK 275

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P++ITYSTLI+G C  G    A+ L       +G   V  KPNTVTY+T+I+G CK   +
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLL------SGMVSVGLKPNTVTYSTLINGYCKISRM 329

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A  LF +M+   ++PD++TYN ++ G         A  L + + + G Q ++ T+N+I
Sbjct: 330 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 389

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +  LCKN   D+A ++ + + L  +     TF+ ++D     GR + AK+LFV+  S G 
Sbjct: 390 LHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 449

Query: 390 KHTVFSY 396
               ++Y
Sbjct: 450 VPNYWTY 456



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 117/250 (46%), Gaps = 9/250 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D  + L   + S GL P+  TY+ 
Sbjct: 261 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEAMKLLSGMVSVGLKPNTVTYST 318

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+ ++   G
Sbjct: 319 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 378

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + K          T+  +ID L K G
Sbjct: 379 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKL------EARTFNIMIDALLKVG 432

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF+      + P+  TY  +           E + L + M D G   D    N
Sbjct: 433 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 492

Query: 328 VIMDELCKNG 337
            I+ EL + G
Sbjct: 493 FIVRELLQRG 502


>gi|222613081|gb|EEE51213.1| hypothetical protein OsJ_32035 [Oryza sativa Japonica Group]
          Length = 861

 Score =  207 bits (526), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 120/324 (37%), Positives = 176/324 (54%), Gaps = 21/324 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + PDL TY
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  +A+ FT L+KGLCA+ R  +A  +   ++ 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+NGLC    +  AL L   MA+  G       P+ V+YTT+I+G  
Sbjct: 151 ELGCIPNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGG---SPPDVVSYTTVINGFF 207

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN----DWN--------EANCLLI 312
           KEG  DKA   + +M D+ I PDVVTY+S+I   C        W+        E+  L  
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFD 267

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M+  GV+PD++T++ ++D  C  GKMDEA +LL  M+  G+ PNT T+STL++G+C   
Sbjct: 268 LMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKIS 327

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           R+  A  LF  MES G    + +Y
Sbjct: 328 RMEDALVLFKEMESSGVSPDIITY 351



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 150/307 (48%), Gaps = 21/307 (6%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL---NSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P + S+N L   L         L L   +      G  PD+ +Y  +IN F K G     
Sbjct: 156 PNVFSYNNLLNGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKA 215

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCA------------ESRIMEAAALFTKLKAFGCK 209
           +     +L     PD V ++S+I  LC             E R++E+  LF  +   G K
Sbjct: 216 YSTYHEMLDRGILPDVVTYSSIIAALCKGQAMDKPWSHCKEGRVIESEKLFDLMVRIGVK 275

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P++ITYSTLI+G C  G    A+ L       +G   V  KPNTVTY+T+I+G CK   +
Sbjct: 276 PDIITYSTLIDGYCLAGKMDEAMKLL------SGMVSVGLKPNTVTYSTLINGYCKISRM 329

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A  LF +M+   ++PD++TYN ++ G         A  L + + + G Q ++ T+N+I
Sbjct: 330 EDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNII 389

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +  LCKN   D+A ++ + + L  +     TF+ ++D     GR + AK+LFV+  S G 
Sbjct: 390 LHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGL 449

Query: 390 KHTVFSY 396
               ++Y
Sbjct: 450 VPNYWTY 456



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 116/248 (46%), Gaps = 9/248 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D  + L   + S GL P+  TY+ 
Sbjct: 261 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEAMKLLSGMVSVGLKPNTVTYST 318

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+ ++   G
Sbjct: 319 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 378

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + K          T+  +ID L K G
Sbjct: 379 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKL------EARTFNIMIDALLKVG 432

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF+      + P+  TY  +           E + L + M D G   D    N
Sbjct: 433 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 492

Query: 328 VIMDELCK 335
            I+ EL +
Sbjct: 493 FIVRELLQ 500


>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
 gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
          Length = 614

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/315 (34%), Positives = 170/315 (53%), Gaps = 12/315 (3%)

Query: 88  NEAFCIFDYMLNMRPS------PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
             A  +F  ML+ R         P + ++++L   L K       + L + + + G  PD
Sbjct: 166 ERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPD 225

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + TY IL++  CK  +V+  + VL  +L +   P+ V + SL+ GLC   R+ +A AL  
Sbjct: 226 VITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMR 285

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            +   GC PNV+TY TLI+GLC+ G    A  +  +M +  G       P+ + Y  +I+
Sbjct: 286 DMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGT------PDLMIYNMLIN 339

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLCK   VD++  L  +     I PDVVTY+S+I+G C +N  +EA  LL+ +  +G  P
Sbjct: 340 GLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPP 399

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           DV+ ++ ++D LCK GK+DEA  L E+M   G + +  T+STL+DG C  GRV+ A  L 
Sbjct: 400 DVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLL 459

Query: 382 VSMESMGCKHTVFSY 396
             M  MG   +  +Y
Sbjct: 460 ARMVRMGTPPSTMTY 474



 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 177/317 (55%), Gaps = 14/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-------NSTGLF 139
           P+ A  +F++M ++  SP  + ++N L   L +T   +  ++LF+ +             
Sbjct: 130 PDRAQELFEHMKSVECSPS-MVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCS 188

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P++ TY++LI+  CK  RVS    +L  +     +PD + +T L+ GLC ES++  A  +
Sbjct: 189 PNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEV 248

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   GC PN++TY++L++GLCR      AL L  +M          C PN VTY T+
Sbjct: 249 LREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRG------CTPNVVTYGTL 302

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLCK G V  A  +   M DK   PD++ YN LI+G C A+  +E+  LL   +  G+
Sbjct: 303 IDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGI 362

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PDVVT++ ++  LC++ ++DEA RLL  +  RG  P+   +STL+DG C  G+V+ A +
Sbjct: 363 KPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEAFD 422

Query: 380 LFVSMESMGCKHTVFSY 396
           L+  M   GC   V +Y
Sbjct: 423 LYEVMAGDGCDADVVTY 439



 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 112/302 (37%), Positives = 157/302 (51%), Gaps = 13/302 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  L   L K        ++   +   G  PDL  YN+LIN  CK  +V  
Sbjct: 290 RGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDE 349

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L R +     PD V ++S+I GLC  +R+ EA  L   +K+ GC P+VI YSTLI+
Sbjct: 350 SIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLID 409

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC+ G    A +L+E MA G+G     C  + VTY+T+IDGLCK G VD+A  L  +M 
Sbjct: 410 GLCKAGKVDEAFDLYEVMA-GDG-----CDADVVTYSTLIDGLCKAGRVDEAHLLLARMV 463

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P  +TYNSLI G C  N  +EA  L+ EM      P  VT+N+++  +C+  ++D
Sbjct: 464 RMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVD 523

Query: 341 EASRLLELMILR-----GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTV 393
            A  LLE    R     G   +T  +S+L+DG C  GRV  A + F  M   G    H  
Sbjct: 524 SAVVLLEQAKARCVAAGGTALDTIAYSSLIDGLCKAGRVAEALDYFQEMIDNGVIPDHIT 583

Query: 394 FS 395
           +S
Sbjct: 584 YS 585



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/279 (34%), Positives = 146/279 (52%), Gaps = 1/279 (0%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           ++L   L K K     L  F+ +  +G+  D   Y  L++   K  R+     +L  +  
Sbjct: 48  SILIDGLCKAKRSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRD 107

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ V + SLI GLC  +    A  LF  +K+  C P+++TY+TL++GL RTG    
Sbjct: 108 HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLER 167

Query: 231 ALNLFEEMANGNG-KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           A+ LF+EM +         C PN +TY+ +IDGLCK   V +A EL   MK +  +PDV+
Sbjct: 168 AMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVI 227

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY  L+ G C  +    A  +L EM+D G  P++VT+N ++  LC+  ++ +A  L+  M
Sbjct: 228 TYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDM 287

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             RG  PN  T+ TL+DG C  GRV  A  +   M   G
Sbjct: 288 TCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMIDKG 326



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/299 (33%), Positives = 157/299 (52%), Gaps = 13/299 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     +    D     F  + S  L P+++  +ILI+  CK  R       
Sbjct: 7   PDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDALRC 66

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S    D V +T+L+ GL  E R+ +A A+  +++  GC+PNV+TY++LI+GLC+
Sbjct: 67  FRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCK 126

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-- 282
                 A  LFE M +      V C P+ VTY T++DGL + G +++A  LF +M D+  
Sbjct: 127 NNEPDRAQELFEHMKS------VECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRS 180

Query: 283 -----NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
                  +P+V+TY+ LI G C AN  ++A  LL  M  +G  PDV+T+ +++D LCK  
Sbjct: 181 HDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITYTILVDGLCKES 240

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+  A  +L  M+  G  PN  T+++L+ G C   RV+ A  L   M   GC   V +Y
Sbjct: 241 KVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTY 299



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 96/277 (34%), Positives = 148/277 (53%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L + +     L+L + +   G  P++ TY  LI+  CK+GRV     +
Sbjct: 259 PNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAM 318

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++    TPD + +  LI GLC   ++ E+ AL  +  + G KP+V+TYS++I GLCR
Sbjct: 319 LADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCR 378

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L   + +        C P+ + Y+T+IDGLCK G VD+A +L+  M     
Sbjct: 379 SNRLDEACRLLLYVKSRG------CPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGC 432

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + DVVTY++LI G C A   +EA+ LL  M+  G  P  +T+N ++  LC    +DEA  
Sbjct: 433 DADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIE 492

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           L+E M      P+  T++ L+ G C   RV+ A  L 
Sbjct: 493 LVEEMERSNCAPSAVTYNILIHGMCRMERVDSAVVLL 529



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 117/222 (52%), Gaps = 11/222 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP +  ++ L   L K    D    L++ +   G   D+ TY+ LI+  CK GRV  
Sbjct: 395 RGCPPDVILYSTLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDE 454

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             ++L R++R    P  + + SLIKGLC  + + EA  L  +++   C P+ +TY+ LI+
Sbjct: 455 AHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIH 514

Query: 221 GLCRTGHTIVALNLFEE-----MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           G+CR      A+ L E+     +A G          +T+ Y+++IDGLCK G V +A + 
Sbjct: 515 GMCRMERVDSAVVLLEQAKARCVAAGGTAL------DTIAYSSLIDGLCKAGRVAEALDY 568

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           F +M D  + PD +TY+ L+ G   + D +E   L+++ M Q
Sbjct: 569 FQEMIDNGVIPDHITYSILLEGLKKSKDLHELRHLVLDQMVQ 610



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/231 (32%), Positives = 103/231 (44%), Gaps = 48/231 (20%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+V TY+ L+ G CR G    A   F+EM + N        PN    + +IDGLCK  
Sbjct: 5   CQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKN------LVPNVFLCSILIDGLCKAK 58

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A   F  M+   I  D V Y +L+ G       ++A  +L EM D G +P+VVT+N
Sbjct: 59  RSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYN 118

Query: 328 VIMDELCKNGKMDEASRLLELM--------------ILRGV------------------- 354
            ++D LCKN + D A  L E M              +L G+                   
Sbjct: 119 SLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDR 178

Query: 355 ---------NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                    +PN  T+S L+DG C   RV+ A EL  SM++ GC   V +Y
Sbjct: 179 RSHDMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSPDVITY 229



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 81/149 (54%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C+P+  TY  ++ G C+ G +D+A+  F +M+ KN+ P+V   + LI G C A    +A
Sbjct: 4   ICQPDVYTYAALLRGFCRGGEIDQAQRCFDEMRSKNLVPNVFLCSILIDGLCKAKRSIDA 63

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                 M   G+  D V +  ++  L K  ++D+A  +L  M   G  PN  T+++L+DG
Sbjct: 64  LRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDG 123

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C     + A+ELF  M+S+ C  ++ +Y
Sbjct: 124 LCKNNEPDRAQELFEHMKSVECSPSMVTY 152


>gi|46518447|gb|AAS99705.1| At1g62720 [Arabidopsis thaliana]
          Length = 426

 Score =  206 bits (525), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 106/300 (35%), Positives = 178/300 (59%), Gaps = 7/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  RP  P +  F+ +   +AK+K+YD V+SLF  +   G+  DLY+YNI+INC C+  
Sbjct: 1   MIQSRP-LPSIVDFSKVLSKIAKSKNYDLVISLFHHMEVCGIGHDLYSYNIVINCLCRCS 59

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R      V+G++++  + PD V  +SLI G C  +R+ +A  L +K++  G +P+V+ Y+
Sbjct: 60  RFVIALSVVGKMMKFGYEPDVVTVSSLINGFCQGNRVFDAIDLVSKMEEMGFRPDVVIYN 119

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I+G C+ G    A+ LF+ M     + GV  + + VTY +++ GLC  G    A  L 
Sbjct: 120 TIIDGSCKIGLVNDAVELFDRME----RDGV--RADAVTYNSLVAGLCCSGRWSDAARLM 173

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M  ++I P+V+T+ ++I  F     ++EA  L  EM  + V PDV T+N +++ LC +
Sbjct: 174 RDMVMRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMH 233

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++DEA ++L+LM+ +G  P+  T++TL++GFC + RV+   +LF  M   G      +Y
Sbjct: 234 GRVDEAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITY 293



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 152/301 (50%), Gaps = 10/301 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +FD M         +T +N L   L  +  +     L + +    + P++ T+  
Sbjct: 132 NDAVELFDRMERDGVRADAVT-YNSLVAGLCCSGRWSDAARLMRDMVMRDIVPNVITFTA 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ F K G+ S    +   + R C  PD   + SLI GLC   R+ EA  +   +   G
Sbjct: 191 VIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVDEAKQMLDLMVTKG 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+TLING C++        LF EMA   G  G     +T+TY TII G  + G
Sbjct: 251 CLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQ-RGLVG-----DTITYNTIIQGYFQAG 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A+E+F +M  +   P++ TY+ L++G C      +A  L   M    ++ D+ T+N
Sbjct: 305 RPDAAQEIFSRMDSR---PNIRTYSILLYGLCMNWRVEKALVLFENMQKSEIELDITTYN 361

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  +CK G +++A  L   +  +G+ P+  +++T++ GFC   + + +  L+  M+  
Sbjct: 362 IVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQWDKSDLLYRKMQED 421

Query: 388 G 388
           G
Sbjct: 422 G 422



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 124/257 (48%), Gaps = 9/257 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           MR   P + +F  +     K   +   + L++ +    + PD++TYN LIN  C  GRV 
Sbjct: 178 MRDIVPNVITFTAVIDVFVKEGKFSEAMKLYEEMTRRCVDPDVFTYNSLINGLCMHGRVD 237

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +L  ++     PD V + +LI G C   R+ E   LF ++   G   + ITY+T+I
Sbjct: 238 EAKQMLDLMVTKGCLPDVVTYNTLINGFCKSKRVDEGTKLFREMAQRGLVGDTITYNTII 297

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            G  + G    A  +F  M +         +PN  TY+ ++ GLC    V+KA  LF  M
Sbjct: 298 QGYFQAGRPDAAQEIFSRMDS---------RPNIRTYSILLYGLCMNWRVEKALVLFENM 348

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           +   I  D+ TYN +IHG C   +  +A  L   +  +G++PDVV++  ++   C+  + 
Sbjct: 349 QKSEIELDITTYNIVIHGMCKIGNVEDAWDLFRSLSCKGLKPDVVSYTTMISGFCRKRQW 408

Query: 340 DEASRLLELMILRGVNP 356
           D++  L   M   G+ P
Sbjct: 409 DKSDLLYRKMQEDGLLP 425


>gi|18407969|ref|NP_564822.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806279|sp|Q9SH60.2|PP103_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64100
 gi|332196071|gb|AEE34192.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 666

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 173/315 (54%), Gaps = 22/315 (6%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A  ++  M  +R  P  + SFN+L  C          LS F +L   G  PD+ T+N
Sbjct: 122 PDVAISLYRKM-EIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFN 180

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCF---------------TPDAVAFTSLIKGLCAES 191
            L++  C   R+S    + G ++ + F               TP  + F +LI GLC E 
Sbjct: 181 TLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEG 240

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           R++EAAAL  K+   G   +V+TY T++NG+C+ G T  ALNL  +M   +       KP
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH------IKP 294

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y+ IID LCK+G    A+ LF +M +K I P+V TYN +I GFC    W++A  LL
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 354

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++ + PDV+TFN ++    K GK+ EA +L + M+ R + P+T T+++++ GFC  
Sbjct: 355 RDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKH 414

Query: 372 GRVNHAKELFVSMES 386
            R + AK +F  M S
Sbjct: 415 NRFDDAKHMFDLMAS 429



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 154/292 (52%), Gaps = 10/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K  H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PD + F +LI     E ++ EA  L  ++      P+ +TY+++I G C+
Sbjct: 354 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 413

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA+          P+ VT+ TIID  C+   VD+  +L  ++  + +
Sbjct: 414 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  TYN+LIHGFC  ++ N A  L  EM+  GV PD +T N+++   C+N K++EA  
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E++ +  ++ +T  ++ ++ G C   +V+ A +LF S+   G +  V +Y
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 575



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR--- 157
           R   P + +FN L     K         L   +    +FPD  TYN +I  FCK  R   
Sbjct: 360 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 419

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++        +PD V F ++I   C   R+ E   L  ++   G   N  TY+T
Sbjct: 420 AKHMFDLMA-------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C   +   A +LF+EM +       VC P+T+T   ++ G C+   +++A ELF 
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFE 526

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   I+ D V YN +IHG C  +  +EA  L   +   GV+PDV T+NV++   C   
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS 586

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            + +A+ L   M   G  P+ ST++TL+ G    G ++ + EL   M S G     F+
Sbjct: 587 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 11/278 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+    P  +T  ++++G   K   +D    +F  + S    PD+ T+N +
Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMAS----PDVVTFNTI 438

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C+  RV  G  +L  I R     +   + +LI G C    +  A  LF ++ + G 
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ IT + L+ G C       AL LFE +             +TV Y  II G+CK   
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSK 552

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A +LF  +    + PDV TYN +I GFC  +  ++AN L  +M D G +PD  T+N 
Sbjct: 553 VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNT 612

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    K G++D++  L+  M   G + +  T   + D
Sbjct: 613 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 650



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 135/309 (43%), Gaps = 62/309 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   FDYM+  RP    +   N + G   +    D  +SL++++    +  ++Y++NI
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++S                                      + F KL   G
Sbjct: 147 LIKCFCDCHKLSFSL-----------------------------------STFGKLTKLG 171

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+V+T++TL++GLC       AL LF  M                          + G
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMV-------------------------ETG 206

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           F++ A  LF QM +  + P V+T+N+LI+G C      EA  L+ +M+ +G+  DVVT+ 
Sbjct: 207 FLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I++ +CK G    A  LL  M    + P+   +S ++D  C  G  + A+ LF  M   
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 388 GCKHTVFSY 396
           G    VF+Y
Sbjct: 326 GIAPNVFTY 334



 Score = 38.5 bits (88), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A + F  M         V  N +I  F   N  + A  L  +M  + +  ++ +FN+
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C   K+  +      +   G  P+  TF+TL+ G CL  R++ A  LF  M   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206


>gi|6692112|gb|AAF24577.1|AC007764_19 F22C12.14 [Arabidopsis thaliana]
          Length = 661

 Score =  206 bits (524), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 112/310 (36%), Positives = 172/310 (55%), Gaps = 17/310 (5%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A  ++  M  +R  P  + SFN+L  C          LS F +L   G  PD+ T+N
Sbjct: 122 PDVAISLYRKM-EIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFN 180

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSC----------FTPDAVAFTSLIKGLCAESRIMEA 196
            L++  C   R+S    + G ++ +            TP  + F +LI GLC E R++EA
Sbjct: 181 TLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVLEA 240

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           AAL  K+   G   +V+TY T++NG+C+ G T  ALNL  +M   +       KP+ V Y
Sbjct: 241 AALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH------IKPDVVIY 294

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + IID LCK+G    A+ LF +M +K I P+V TYN +I GFC    W++A  LL +M++
Sbjct: 295 SAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIE 354

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + PDV+TFN ++    K GK+ EA +L + M+ R + P+T T+++++ GFC   R + 
Sbjct: 355 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 414

Query: 377 AKELFVSMES 386
           AK +F  M S
Sbjct: 415 AKHMFDLMAS 424



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 154/292 (52%), Gaps = 10/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K  H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 289 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 348

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PD + F +LI     E ++ EA  L  ++      P+ +TY+++I G C+
Sbjct: 349 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 408

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA+          P+ VT+ TIID  C+   VD+  +L  ++  + +
Sbjct: 409 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 458

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  TYN+LIHGFC  ++ N A  L  EM+  GV PD +T N+++   C+N K++EA  
Sbjct: 459 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 518

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E++ +  ++ +T  ++ ++ G C   +V+ A +LF S+   G +  V +Y
Sbjct: 519 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 570



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR--- 157
           R   P + +FN L     K         L   +    +FPD  TYN +I  FCK  R   
Sbjct: 355 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 414

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++        +PD V F ++I   C   R+ E   L  ++   G   N  TY+T
Sbjct: 415 AKHMFDLMA-------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 467

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C   +   A +LF+EM +       VC P+T+T   ++ G C+   +++A ELF 
Sbjct: 468 LIHGFCEVDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFE 521

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   I+ D V YN +IHG C  +  +EA  L   +   GV+PDV T+NV++   C   
Sbjct: 522 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS 581

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            + +A+ L   M   G  P+ ST++TL+ G    G ++ + EL   M S G     F+
Sbjct: 582 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 639



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 11/278 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+    P  +T  ++++G   K   +D    +F  + S    PD+ T+N +
Sbjct: 379 EAEKLCDEMLHRCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMAS----PDVVTFNTI 433

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C+  RV  G  +L  I R     +   + +LI G C    +  A  LF ++ + G 
Sbjct: 434 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 493

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ IT + L+ G C       AL LFE +             +TV Y  II G+CK   
Sbjct: 494 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSK 547

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A +LF  +    + PDV TYN +I GFC  +  ++AN L  +M D G +PD  T+N 
Sbjct: 548 VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNT 607

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    K G++D++  L+  M   G + +  T   + D
Sbjct: 608 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 645



 Score = 94.7 bits (234), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 62/211 (29%), Positives = 105/211 (49%), Gaps = 16/211 (7%)

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A +L+ K++      N+ +++ LI   C       +L+ F ++     K G   +P+ VT
Sbjct: 125 AISLYRKMEIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLT----KLGF--QPDVVT 178

Query: 256 YTTIIDGLCKE----------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           + T++ GLC E          G++ +   LF QM +  + P V+T+N+LI+G C      
Sbjct: 179 FNTLLHGLCLEDRISEALALFGYMVETGSLFDQMVEIGLTPVVITFNTLINGLCLEGRVL 238

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           EA  L+ +M+ +G+  DVVT+  I++ +CK G    A  LL  M    + P+   +S ++
Sbjct: 239 EAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAII 298

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D  C  G  + A+ LF  M   G    VF+Y
Sbjct: 299 DRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 329



 Score = 38.5 bits (88), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A + F  M         V  N +I  F   N  + A  L  +M  + +  ++ +FN+
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C   K+  +      +   G  P+  TF+TL+ G CL  R++ A  LF  M   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206


>gi|356529360|ref|XP_003533262.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 594

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 169/308 (54%), Gaps = 12/308 (3%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCF 152
           F  ML + P P  +  FNLLFG +AK++HY T +SL K L+S G    D+ T NI INC 
Sbjct: 62  FHRMLTLTPFPC-IQDFNLLFGLVAKSQHYATAISLIKILHSLGDGSADVCTLNIAINCL 120

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C M + + GF VLG + +    P  V   +++ GLC E  +  A  L  K++  G   N 
Sbjct: 121 CHMRKTTLGFAVLGLMTKIGLEPTLVTLNTIVNGLCIEGDVNHALWLVEKMENLGYHCNA 180

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  L+NGLC+ G T  AL   ++M   N        PN V Y  I+DGLCK G V +A
Sbjct: 181 RTYGALVNGLCKIGDTSGALECLKKMVKRN------LGPNVVVYNAILDGLCKRGLVGEA 234

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYA-NDWNEANCLLIEMM-DQGVQPDVVTFNVIM 330
             L  +M   N+ P+VVTYN LI G C     W E   L  EM+ ++G+ PDV TF++++
Sbjct: 235 LGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFSILV 294

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM--ESMG 388
           D  CK G +  A  ++  M+  GV PN  T+++L+ G+CL  ++  A  +F  M  E  G
Sbjct: 295 DGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVREGEG 354

Query: 389 CKHTVFSY 396
           C  +V ++
Sbjct: 355 CLPSVVTH 362



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 169/314 (53%), Gaps = 13/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYN 146
            EA  +   M  +   P  +T   L+ G   +   +   + LF  + +  G+ PD+ T++
Sbjct: 232 GEALGLLHEMGVVNVEPNVVTYNCLIQGLCGEFGGWREGVGLFNEMVAEKGIVPDVQTFS 291

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--K 204
           IL++ FCK G +     V+G ++R    P+ V + SLI G C  S++ EA  +F  +  +
Sbjct: 292 ILVDGFCKEGLLLRAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVRE 351

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC P+V+T+++LI+G C+      A++L  EM  G G       P+  T+T++I G C
Sbjct: 352 GEGCLPSVVTHNSLIHGWCKVKEVDKAMSLLSEMV-GKG-----LDPDVFTWTSLIGGFC 405

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF--CYANDWNEANCLLIEMMDQGVQPD 322
           +      A+ELF  MK+    P++ T   ++ G   C+ +  +EA  L   MM  G+  D
Sbjct: 406 EVKKPLAARELFFTMKEHGQVPNLQTCAVVLDGLLKCWLD--SEAVTLFRAMMKSGLDLD 463

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           +V +N+++D +CK GK+++A +LL  ++++G+  ++ T++ ++ G C  G ++ A+EL  
Sbjct: 464 IVIYNIMLDGMCKMGKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLR 523

Query: 383 SMESMGCKHTVFSY 396
            M+  GC     SY
Sbjct: 524 KMKENGCPPNKCSY 537



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 132/279 (47%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CL-AKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
            A  +  +M+ +   P  +T  +L+ G CL ++ +    V  L  R    G  P + T+N
Sbjct: 305 RAESVVGFMVRIGVEPNVVTYNSLIAGYCLRSQMEEAMRVFGLMVR-EGEGCLPSVVTHN 363

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI+ +CK+  V     +L  ++     PD   +TSLI G C   + + A  LF  +K  
Sbjct: 364 SLIHGWCKVKEVDKAMSLLSEMVGKGLDPDVFTWTSLIGGFCEVKKPLAARELFFTMKEH 423

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN+ T + +++GL +      A+ LF  M        +V       Y  ++DG+CK 
Sbjct: 424 GQVPNLQTCAVVLDGLLKCWLDSEAVTLFRAMMKSGLDLDIV------IYNIMLDGMCKM 477

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G ++ A++L   +  K +  D  TYN +I G C     ++A  LL +M + G  P+  ++
Sbjct: 478 GKLNDARKLLSCVLVKGLKIDSYTYNIMIKGLCREGLLDDAEELLRKMKENGCPPNKCSY 537

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           NV +  L +   +  + + L++M  +G   + +T   L+
Sbjct: 538 NVFVQGLLRKYDIARSRKYLQIMKDKGFPVDATTAELLI 576


>gi|145326646|ref|NP_001077770.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332196072|gb|AEE34193.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 806

 Score =  206 bits (523), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 113/315 (35%), Positives = 173/315 (54%), Gaps = 22/315 (6%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A  ++  M  +R  P  + SFN+L  C          LS F +L   G  PD+ T+N
Sbjct: 122 PDVAISLYRKM-EIRRIPLNIYSFNILIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFN 180

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCF---------------TPDAVAFTSLIKGLCAES 191
            L++  C   R+S    + G ++ + F               TP  + F +LI GLC E 
Sbjct: 181 TLLHGLCLEDRISEALALFGYMVETGFLEAVALFDQMVEIGLTPVVITFNTLINGLCLEG 240

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           R++EAAAL  K+   G   +V+TY T++NG+C+ G T  ALNL  +M   +       KP
Sbjct: 241 RVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETH------IKP 294

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y+ IID LCK+G    A+ LF +M +K I P+V TYN +I GFC    W++A  LL
Sbjct: 295 DVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLL 354

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++ + PDV+TFN ++    K GK+ EA +L + M+ R + P+T T+++++ GFC  
Sbjct: 355 RDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKH 414

Query: 372 GRVNHAKELFVSMES 386
            R + AK +F  M S
Sbjct: 415 NRFDDAKHMFDLMAS 429



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 154/292 (52%), Gaps = 10/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K  H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 294 PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 353

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PD + F +LI     E ++ EA  L  ++      P+ +TY+++I G C+
Sbjct: 354 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 413

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA+          P+ VT+ TIID  C+   VD+  +L  ++  + +
Sbjct: 414 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 463

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  TYN+LIHGFC  ++ N A  L  EM+  GV PD +T N+++   C+N K++EA  
Sbjct: 464 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 523

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E++ +  ++ +T  ++ ++ G C   +V+ A +LF S+   G +  V +Y
Sbjct: 524 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 575



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR--- 157
           R   P + +FN L     K         L   +    +FPD  TYN +I  FCK  R   
Sbjct: 360 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 419

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++        +PD V F ++I   C   R+ E   L  ++   G   N  TY+T
Sbjct: 420 AKHMFDLMA-------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C   +   A +LF+EM +       VC P+T+T   ++ G C+   +++A ELF 
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFE 526

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   I+ D V YN +IHG C  +  +EA  L   +   GV+PDV T+NV++   C   
Sbjct: 527 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS 586

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            + +A+ L   M   G  P+ ST++TL+ G    G ++ + EL   M S G     F+
Sbjct: 587 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 644



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/281 (29%), Positives = 135/281 (48%), Gaps = 11/281 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+    P  +T  ++++G   K   +D    +F  + S    PD+ T+N +
Sbjct: 384 EAEKLCDEMLHRCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMAS----PDVVTFNTI 438

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C+  RV  G  +L  I R     +   + +LI G C    +  A  LF ++ + G 
Sbjct: 439 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 498

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ IT + L+ G C       AL LFE +             +TV Y  II G+CK   
Sbjct: 499 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSK 552

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A +LF  +    + PDV TYN +I GFC  +  ++AN L  +M D G +PD  T+N 
Sbjct: 553 VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNT 612

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++    K G++D++  L+  M   G + +  T     +  C
Sbjct: 613 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMAEEIIC 653



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 135/309 (43%), Gaps = 62/309 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   FDYM+  RP    +   N + G   +    D  +SL++++    +  ++Y++NI
Sbjct: 88  DDAIDFFDYMVRSRPFYTAVDC-NKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI CFC   ++S                                      + F KL   G
Sbjct: 147 LIKCFCDCHKLSFSL-----------------------------------STFGKLTKLG 171

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+V+T++TL++GLC       AL LF  M                          + G
Sbjct: 172 FQPDVVTFNTLLHGLCLEDRISEALALFGYMV-------------------------ETG 206

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           F++ A  LF QM +  + P V+T+N+LI+G C      EA  L+ +M+ +G+  DVVT+ 
Sbjct: 207 FLE-AVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYG 265

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I++ +CK G    A  LL  M    + P+   +S ++D  C  G  + A+ LF  M   
Sbjct: 266 TIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEK 325

Query: 388 GCKHTVFSY 396
           G    VF+Y
Sbjct: 326 GIAPNVFTY 334



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 117/248 (47%), Gaps = 11/248 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD M     + P + +FN +     + K  D  + L + ++  GL  +  TYN 
Sbjct: 418 DDAKHMFDLM-----ASPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 472

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FC++  ++    +   ++     PD +    L+ G C   ++ EA  LF  ++   
Sbjct: 473 LIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEVIQMSK 532

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + + Y+ +I+G+C+      A +LF  +       GV  +P+  TY  +I G C + 
Sbjct: 533 IDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLP----IHGV--EPDVQTYNVMISGFCGKS 586

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A  LF +MKD    PD  TYN+LI G   A + +++  L+ EM   G   D  T  
Sbjct: 587 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIK 646

Query: 328 VIMDELCK 335
           +  + +C+
Sbjct: 647 MAEEIICR 654



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 94/196 (47%), Gaps = 6/196 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T++N L     +  + +    LF+ + S G+ PD  T NIL+  FC+  ++     +   
Sbjct: 468 TTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALELFEV 527

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           I  S    D VA+  +I G+C  S++ EA  LF  L   G +P+V TY+ +I+G C    
Sbjct: 528 IQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSA 587

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LF +M + NG      +P+  TY T+I G  K G +DK+ EL  +M+    + D
Sbjct: 588 ISDANVLFHKMKD-NGH-----EPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGD 641

Query: 288 VVTYNSLIHGFCYAND 303
             T        C  +D
Sbjct: 642 AFTIKMAEEIICRVSD 657



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 67/153 (43%), Gaps = 1/153 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ ++ M        ++N++   + K    D    LF  L   G+ PD+ TYN++
Sbjct: 520 EALELFE-VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVM 578

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC    +S   V+  ++  +   PD   + +LI+G      I ++  L +++++ G 
Sbjct: 579 ISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGF 638

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
             +  T       +CR     +  N      NG
Sbjct: 639 SGDAFTIKMAEEIICRVSDEEIIENYLRPKING 671



 Score = 38.9 bits (89), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 52/120 (43%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D A + F  M         V  N +I  F   N  + A  L  +M  + +  ++ +FN+
Sbjct: 87  LDDAIDFFDYMVRSRPFYTAVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNI 146

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C   K+  +      +   G  P+  TF+TL+ G CL  R++ A  LF  M   G
Sbjct: 147 LIKCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETG 206


>gi|357499971|ref|XP_003620274.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495289|gb|AES76492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 498

 Score =  205 bits (522), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 172/317 (54%), Gaps = 30/317 (9%)

Query: 82  ITAITPNEAFCI--FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           IT I  +E   +  F+ +L+ +   PP+  F  + G L K   Y T +SL +++   G+ 
Sbjct: 33  ITIIKNDEHNLVSSFNRLLHQKNPTPPIFEFGKILGSLVKINCYHTAISLHRQMELKGIA 92

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
            +L T NILINCF ++G+    F V   IL+  + P+ +  T+LIKGLC +         
Sbjct: 93  SNLVTLNILINCFSQLGQNPLSFSVFANILKKGYDPNVITLTTLIKGLCLK--------- 143

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
                        ++Y TLINGLC+ G    AL L   +       G + +PN V Y TI
Sbjct: 144 -------------VSYGTLINGLCKVGQARAALQLLRRVD------GKLVQPNVVMYNTI 184

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ID +CK   V++A +L+ +M  + I+PDVVTY++LI GF       +A  L  +M+ + +
Sbjct: 185 IDSMCKVKLVNEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAIDLFNKMILENI 244

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PDV TFN+++D  CK+GKM E   +  +M+ +G+ PN  T+ +LMDG+CL  +VN A  
Sbjct: 245 KPDVYTFNILVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANS 304

Query: 380 LFVSMESMGCKHTVFSY 396
           +F +M   G      SY
Sbjct: 305 IFNTMAQGGVNPDTQSY 321



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 159/309 (51%), Gaps = 15/309 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF ++  M++   SP  +T   L+ G     K  D +  LF ++    + PD+YT+NI
Sbjct: 195 NEAFDLYSEMVSEGISPDVVTYSALISGFFIVGKLKDAI-DLFNKMILENIKPDVYTFNI 253

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G++  G  V   +++    P+ V + SL+ G C   ++ +A ++F  +   G
Sbjct: 254 LVDGFCKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKQVNKANSIFNTMAQGG 313

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y+ +ING C+      A+NLF++M   N        PN VTYT++IDGLCK G
Sbjct: 314 VNPDTQSYNIMINGFCKIKKVDEAMNLFKKMHCKN------IIPNVVTYTSLIDGLCKSG 367

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--------GV 319
            +  A +L  +M D+ + PD++TY+S++   C  +  ++A  LL ++ DQ        G 
Sbjct: 368 KISYALKLVDEMHDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQVFEDLFVKGY 427

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
             DV  + V++   C  G  +EA  LL  M   G  P+  T+  ++         + A++
Sbjct: 428 NLDVYAYTVMIQGFCVKGLFNEALALLSKMEDNGRIPDAKTYEIIILSLFKKDENDMAEK 487

Query: 380 LFVSMESMG 388
           L   M + G
Sbjct: 488 LLREMIARG 496


>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
 gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
          Length = 552

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 107/286 (37%), Positives = 157/286 (54%), Gaps = 8/286 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   ++N L   L          SL +++ + G  P+L T+ ++I   CK G +  
Sbjct: 130 RGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEGEIEA 189

Query: 161 GFVVLGRI--LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
            F V+  +  + S  +PD + F S++ GLC E RI++A  +F +    GC+PNV+TYSTL
Sbjct: 190 AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTL 249

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+GL +      AL L  +M        + C+ NTVTY+T++DGL K G ++ A  +  Q
Sbjct: 250 IDGLSKMAKMDEALQLLAKMVE------LGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQ 303

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M+D    PD VTYN+LI GF       EA  LL EM++ G  P VVT+  +   LC++G+
Sbjct: 304 MRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGR 363

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            DEA  +L+ M  RG  PN  T+S+++DG C  GRV  A   F  M
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 158/289 (54%), Gaps = 7/289 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +++ L   L+K    D  L L  ++   G   +  TY+ +++   K+GR+  
Sbjct: 237 RGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMED 296

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             VVL ++  +   PDAV + +LI G     R+ EA  L  ++   G  P+V+TY+TL +
Sbjct: 297 AVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCH 356

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM- 279
           GLCR+G    A+ + + MA         C PN +TY++I+DGLCK G V +A   F +M 
Sbjct: 357 GLCRSGRFDEAVEILDYMAARG------CAPNAITYSSIVDGLCKAGRVTEALGYFEKMA 410

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           +D+ + P V+ Y++LI G C A   +EA   L  M+  G  PDVVTF+++++ LC  G++
Sbjct: 411 RDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRI 470

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           D    L   M  RG  P+  T++TL+D  C   RV+ A +LF  M S G
Sbjct: 471 DTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSDG 519



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M+ +      +T   ++ G L   +  D V+ L +++   G  PD  TYN 
Sbjct: 260 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNT 318

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K  R+     +L  +L + F P  V +T+L  GLC   R  EA  +   + A G
Sbjct: 319 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 378

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN ITYS++++GLC+ G    AL  FE+MA        V  P+ + Y+ +IDGLCK G
Sbjct: 379 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDE-----VVAPHVIAYSALIDGLCKAG 433

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E   +M      PDVVT++ LI+G C A   +    L   M ++G  PD+VT+ 
Sbjct: 434 KIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYA 493

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            ++D LC+  ++DEA  L + M   G++P+ ST  T++ G     R   AK +
Sbjct: 494 TLVDRLCRASRVDEAFDLFQQMRSDGLSPDRSTRRTMIHGLLEVNRDEDAKRI 546



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 168/330 (50%), Gaps = 16/330 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVL 127
            +K  CK   +G+I A     AF + D M  +     P + +FN +   L K +      
Sbjct: 177 IIKGLCK---EGEIEA-----AFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAH 228

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++FKR    G  P++ TY+ LI+   KM ++     +L +++      + V +++++ GL
Sbjct: 229 NVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGL 288

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
               R+ +A  +  +++  GC P+ +TY+TLI+G  +      A+ L  EM         
Sbjct: 289 LKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAG----- 343

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+ VTYTT+  GLC+ G  D+A E+   M  +   P+ +TY+S++ G C A    EA
Sbjct: 344 -FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEA 402

Query: 308 NCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
                +M  D+ V P V+ ++ ++D LCK GK+DEA   LE MI  G  P+  TFS L++
Sbjct: 403 LGYFEKMARDEVVAPHVIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILIN 462

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  GR++   ELF  M   GC   + +Y
Sbjct: 463 GLCDAGRIDTGLELFRGMAERGCVPDMVTY 492



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 149/283 (52%), Gaps = 9/283 (3%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K++  D  ++LFK++    ++PD+ TY  LI+   K  RV   + +          P 
Sbjct: 5   LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT 64

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHTIVALNLF 235
            V + ++I GLC   RI  A  L+  +   FG +P V+TYSTLI+GLCR         L 
Sbjct: 65  VVTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLL 124

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           EEMA G G     C PN VTY T+++ L  +G   +A  L  QM      P+++T+  +I
Sbjct: 125 EEMA-GRG-----CAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLII 178

Query: 296 HGFCYANDWNEANCLLIE--MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
            G C   +   A  ++ E  M++ G+ PDV+TFN ++D LCK  ++ +A  + +  + RG
Sbjct: 179 KGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 238

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             PN  T+STL+DG     +++ A +L   M  +GC+    +Y
Sbjct: 239 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTY 281



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/251 (35%), Positives = 145/251 (57%), Gaps = 7/251 (2%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK  +V     +  +++     PD V + +LI GL  + R+ EA  LF + +A G
Sbjct: 1   MIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKG 60

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P V+TY+T+I+GLC+ G    AL L+++MA     FG   +P  VTY+T+IDGLC++ 
Sbjct: 61  CHPTVVTYNTMIDGLCKCGRIENALTLYDDMAI---HFGF--RPTVVTYSTLIDGLCRDH 115

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VDK  +L  +M  +   P+ VTYN+L++         EA  LL +M   G  P+++TF 
Sbjct: 116 EVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFG 175

Query: 328 VIMDELCKNGKMDEASRLLE--LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +I+  LCK G+++ A R+++   MI  G++P+  TF++++DG C   R+  A  +F    
Sbjct: 176 LIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRAL 235

Query: 386 SMGCKHTVFSY 396
             GC+  V +Y
Sbjct: 236 ERGCRPNVVTY 246


>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
 gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
          Length = 474

 Score =  204 bits (520), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 167/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F  ML +R   P +  F+ LF  + +  HY+TV+ L K +   G+  D+++ +I
Sbjct: 44  DDALASFRLML-LRKPLPCIVEFSKLFSSIVRMGHYETVVYLSKEIEFLGIEQDIHSLSI 102

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC + RV  G  VL +IL+    P  V FT+L+ GLC E ++ +   L+  +   G
Sbjct: 103 LINCFCHLHRVDFGLSVLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRG 162

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PNV TY+ +IN L ++G    AL   ++M        V C PN V Y+T+IDG C  G
Sbjct: 163 LQPNVYTYNVIINSLSKSGKANEALGFLKQMEK------VGCVPNVVNYSTLIDGYCLRG 216

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A+ +F  M  K   P+V TY SL++G+C      EA  LL E + +G+ PD+VTF 
Sbjct: 217 QMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFT 276

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+  LC+ G+   A +L   +   G  PN  T+  L+DG C  G +  A  LF  M+  
Sbjct: 277 TIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRS 336

Query: 388 GCKHTVFSY 396
             K  +  Y
Sbjct: 337 TVKPNLVIY 345



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 137/262 (52%), Gaps = 6/262 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L          D   S+F  + S G  P++YTY  L+N +CK+ R+     +
Sbjct: 200 PNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQL 259

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   LR    PD V FT++I GLC   R + A  LF  + A G  PN++TY  L++GLC+
Sbjct: 260 LDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGHTPNIMTYGVLLDGLCK 319

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  LF+EM           KPN V YT +ID LCK G +   KELF ++ D+ +
Sbjct: 320 HGNLEEAFALFQEMQRST------VKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGL 373

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TY +L+   C      EA+ L  +M + G  PD   +NVI+    ++     A +
Sbjct: 374 KPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQ 433

Query: 345 LLELMILRGVNPNTSTFSTLMD 366
           L+E M+ RG + + +T + L D
Sbjct: 434 LVEEMVNRGFSADAATRALLND 455



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 158/302 (52%), Gaps = 9/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++   ++D ML +R   P + ++N++   L+K+   +  L   K++   G  P++  Y+ 
Sbjct: 149 DQVMMLYDDML-VRGLQPNVYTYNVIINSLSKSGKANEALGFLKQMEKVGCVPNVVNYST 207

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +C  G++     V   ++    TP+   +TSL+ G C   RI EA  L  +    G
Sbjct: 208 LIDGYCLRGQMDEARSVFDLMVSKGCTPNVYTYTSLMNGYCKIERIEEAVQLLDETLRKG 267

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             P+++T++T+I+GLCR G  + A  LF  + A+G+        PN +TY  ++DGLCK 
Sbjct: 268 LVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAHGH-------TPNIMTYGVLLDGLCKH 320

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++A  LF +M+   + P++V Y  LI   C      +   L   ++D+G++P+V T+
Sbjct: 321 GNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLIDEGLKPNVYTY 380

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  LCK G + EA +L   M   G  P+   ++ ++ GF      + A++L   M +
Sbjct: 381 TALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMARQLVEEMVN 440

Query: 387 MG 388
            G
Sbjct: 441 RG 442


>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
 gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
          Length = 799

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 117/339 (34%), Positives = 183/339 (53%), Gaps = 17/339 (5%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK--- 121
            LE+ + ER +S   G       ++A  +FD +L+    P  + +FN L   +++ +   
Sbjct: 14  ELERIIAERARSRSLG------LDDALKLFDELLH-HARPASVRAFNHLLTAVSRARCSS 66

Query: 122 HYDTVLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
             +  +S F R+    S  + P+L TY+ILI  FC+MG + HGF   G IL++ +  D +
Sbjct: 67  ASELAVSHFNRMVRECSDKVAPNLCTYSILIGRFCRMGHLEHGFAAFGLILKTGWRMDHI 126

Query: 179 AFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           A   L+KGLC   R+ EA   L  ++   GC P+ ++Y+ L+ GLC       AL L   
Sbjct: 127 AINQLLKGLCHGKRVGEAMDVLLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHM 186

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           MA+ +G+    C PN V+Y+ +I+G   EG VDK   LFL+M D+ I PDVVTY ++I G
Sbjct: 187 MADDHGR---RCPPNVVSYSIVINGFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDG 243

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C A  ++ A  +  +M+D G +P+  T+N ++      GK  E  ++LE M  RG+ P+
Sbjct: 244 LCKAQLFDRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGKWKEVVQMLEEMSARGLKPD 303

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T+ +L++  C  GR   A+  F SM   G K  V +Y
Sbjct: 304 CYTYGSLLNYLCKNGRCREARFFFDSMIRKGIKPKVSTY 342



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 172/338 (50%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ + +F  M++ R  PP + ++  +   L K + +D    +F+++   G  P+ YTYN 
Sbjct: 216 DKPYNLFLEMID-RGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKPNNYTYNC 274

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +  +G+      +L  +      PD   + SL+  LC   R  EA   F  +   G
Sbjct: 275 LIHGYLSIGKWKEVVQMLEEMSARGLKPDCYTYGSLLNYLCKNGRCREARFFFDSMIRKG 334

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVAL----------NLFEEMANGNGKFGVVCK-- 250
            KP V TY  LI+G    G     H+ + L          ++F    +   K G++ K  
Sbjct: 335 IKPKVSTYGILIHGYATKGALSEMHSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAM 394

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN V Y  +ID LCK G VD A+  F QM ++ + P++V +NSL++G 
Sbjct: 395 DIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGL 454

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W  A  L+ EM+DQG+ P+ V FN ++  LC  G++ E  RL++LM   GV P+ 
Sbjct: 455 CTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDA 514

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++ L+ G+CLTGR + A+++F  M S+G   T  +Y
Sbjct: 515 FSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTY 552



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 102/353 (28%), Positives = 165/353 (46%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T    +E     D M+    SP     FN+ F   AK    D  + +F ++   GL
Sbjct: 347 HGYATKGALSEMHSFLDLMVENGLSPDHHI-FNIFFSAYAKCGMIDKAMDIFNKMRQHGL 405

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC-------AES 191
            P++  Y  LI+  CK+GRV    V   +++    TP+ V F SL+ GLC       AE 
Sbjct: 406 SPNVVNYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFNSLVYGLCTVDKWERAEE 465

Query: 192 ----------------------------RIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                       R+ME   L   ++  G +P+  +Y+ LI+G C
Sbjct: 466 LVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYC 525

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            TG T  A  +F+ M +      +   P  VTY T++ G C    +D A  LF +M  K 
Sbjct: 526 LTGRTDEAEKVFDGMVS------IGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKG 579

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P VVTYN+++HG      ++EA  L + M++ G + D+ T+N+I++ LCK+  +DEA 
Sbjct: 580 VTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAF 639

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ + +  +G+  N  TF+ ++      GR   A +LF ++ + G    V +Y
Sbjct: 640 KMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTY 692



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 145/301 (48%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N     P +  FN L   L     ++    L   +   G+ P+   +N 
Sbjct: 426 DDAEVKFNQMIN-EGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNT 484

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C +GRV  G  ++  +      PDA ++T LI G C   R  EA  +F  + + G
Sbjct: 485 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIG 544

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  +TY+TL++G C       A  LF EM     + GV   P  VTY TI+ GL +  
Sbjct: 545 LSPTEVTYNTLLHGYCSASRIDDAYCLFREML----RKGVT--PGVVTYNTILHGLFQTK 598

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AKEL+L M +     D+ TYN +++G C +N  +EA  +   +  +G+Q +++TF 
Sbjct: 599 RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT 658

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K G+ ++A  L   +   G+ PN  T+  + +     G +     LF +ME  
Sbjct: 659 IMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKN 718

Query: 388 G 388
           G
Sbjct: 719 G 719



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 152/344 (44%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  M++    P   T   L+ G L+  K +  V+ + + +++ GL PD YTY  
Sbjct: 251 DRAEGVFQQMIDNGFKPNNYTYNCLIHGYLSIGK-WKEVVQMLEEMSARGLKPDCYTYGS 309

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME------------ 195
           L+N  CK GR          ++R    P    +  LI G   +  + E            
Sbjct: 310 LLNYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVENG 369

Query: 196 -----------------------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                  A  +F K++  G  PNV+ Y  LI+ LC+ G    A 
Sbjct: 370 LSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAE 429

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
             F +M N     GV   PN V + +++ GLC     ++A+EL  +M D+ I P+ V +N
Sbjct: 430 VKFNQMINE----GVT--PNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFN 483

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI   C      E   L+  M   GV+PD  ++  ++   C  G+ DEA ++ + M+  
Sbjct: 484 TLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSI 543

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++P   T++TL+ G+C   R++ A  LF  M   G    V +Y
Sbjct: 544 GLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTY 587



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L   +   G+ PD ++Y  LI+ +C  GR      V   ++    +P  V + +L+ G C
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 560

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           + SRI +A  LF ++   G  P V+TY+T+++GL +T     A  L+  M N     G  
Sbjct: 561 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS----GTK 616

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C  +  TY  I++GLCK   VD+A ++F  +  K +  +++T+  +I          +A 
Sbjct: 617 C--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 674

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L   +   G+ P+VVT+ ++ + L + G ++E   L   M   G  PN+   + L+   
Sbjct: 675 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 734

Query: 369 CLTGRVNHA 377
              G ++ A
Sbjct: 735 LHRGDISRA 743



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 127/293 (43%), Gaps = 9/293 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E   + D M ++   P   +   L+ G CL  T   D    +F  + S GL P   TYN 
Sbjct: 497 EGRRLIDLMEHVGVRPDAFSYTPLISGYCL--TGRTDEAEKVFDGMVSIGLSPTEVTYNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C   R+   + +   +LR   TP  V + +++ GL    R  EA  L+  +   G
Sbjct: 555 LLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K ++ TY+ ++NGLC++     A  +F+ + +   +       N +T+T +I  L K G
Sbjct: 615 TKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQL------NIITFTIMIGALLKGG 668

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             + A +LF  +    + P+VVTY  +           E + L   M   G  P+    N
Sbjct: 669 RKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLN 728

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            ++  L   G +  A   L  +  R  +   ST S LM  F      +HAK L
Sbjct: 729 ALVRRLLHRGDISRAGAYLSKLDERNFSVEASTTSLLMSIFTSDEYQHHAKSL 781



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 9/261 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+++  SP  +T   LL G  + ++  D    LF+ +   G+ P + TYN 
Sbjct: 531 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR-IDDAYCLFREMLRKGVTPGVVTYNT 589

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++   +  R S    +   ++ S    D   +  ++ GLC  + + EA  +F  L + G
Sbjct: 590 ILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 649

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            + N+IT++ +I  L + G    A++LF  + ANG         PN VTY  + + L +E
Sbjct: 650 LQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANG-------LVPNVVTYRLVAENLIEE 702

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++   LF  M+     P+    N+L+    +  D + A   L ++ ++    +  T 
Sbjct: 703 GSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTT 762

Query: 327 NVIMDELCKNGKMDEASRLLE 347
           +++M     +     A  L E
Sbjct: 763 SLLMSIFTSDEYQHHAKSLPE 783


>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  204 bits (519), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 184/348 (52%), Gaps = 40/348 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ +L   P+PP +  FN + G L K+KHY TVL L +++   G+ P+L   NI
Sbjct: 44  DDAVSLFNRLLQQNPTPPNI-EFNKILGSLVKSKHYHTVLYLSQKMEFRGIKPNLVNCNI 102

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME----------AA 197
           LIN FC++G +   F VL +IL+  + P+ +   +LIKGLC   +I +          A 
Sbjct: 103 LINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAV 162

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--------- 248
            LF K+      P+V T++ L++G C+ G    A N+   M     K GVV         
Sbjct: 163 DLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGY 222

Query: 249 --------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                 P+  +Y+ +I+G CK   +D+A EL  +M  K I P+V
Sbjct: 223 FLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNV 282

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY+SLI G C +   + A  L+ EM D+G  P++VT++ I+D LCKN ++D A  LL  
Sbjct: 283 VTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQ 342

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+ PN  T++ L+ G C +G++  A+++F  +   G    V++Y
Sbjct: 343 MKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTY 390



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 166/309 (53%), Gaps = 15/309 (4%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT---------VLSLFKRLNSTGLFP 140
           AF +   +L M   P  +T   L+ G     K +D           + LF ++    + P
Sbjct: 116 AFSVLTKILKMGYKPNTITLNTLIKGLCLNGKIHDKHCIVGKLKDAVDLFNKMILENINP 175

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+YT+ IL++ FCK GRV     VL  ++     P  V + SL+ G     ++ +A ++F
Sbjct: 176 DVYTFTILVDGFCKEGRVKEAKNVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIF 235

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +   G  P++ +YS LING C+      A+ L +EM +          PN VTY+++I
Sbjct: 236 NTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQ------IIPNVVTYSSLI 289

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DGLCK G +  A +L  +M D+   P++VTY+S++   C  +  + A  LL +M +QG+Q
Sbjct: 290 DGLCKSGKISYALKLVDEMHDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKNQGIQ 349

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P++ T+ +++  LC++GK+++A ++ E ++++G N N  T++ ++ GFC  G  + A  L
Sbjct: 350 PNMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTL 409

Query: 381 FVSMESMGC 389
              ME  GC
Sbjct: 410 LSKMEDNGC 418



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 141/276 (51%), Gaps = 6/276 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+ ++   P + ++N L       K  +   S+F  +   G+ PD+ +Y+ILIN FCK+ 
Sbjct: 202 MMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIK 261

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     +L  +      P+ V ++SLI GLC   +I  A  L  ++   G  PN++TYS
Sbjct: 262 MMDEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYS 321

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++++ LC+      A+ L  +M N         +PN  TYT +I GLC+ G ++ A+++F
Sbjct: 322 SILDALCKNHQVDNAIALLTQMKNQG------IQPNMYTYTILIKGLCQSGKLEDARKVF 375

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             +  K  N +V TY  +I GFC    ++EA  LL +M D G  P+  T+ +I+  L K 
Sbjct: 376 EDLLVKGHNLNVYTYTVMIQGFCDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKK 435

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            + + A +LL  MI    +   +  + L+    +TG
Sbjct: 436 DENEMAEKLLCEMIETNFDGRVALTNDLIASIWVTG 471


>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 526

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 117/338 (34%), Positives = 181/338 (53%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F +M+  RP P  +  F  L   +AK K +D V++L K L   G+  DLYT N+
Sbjct: 53  NEALDLFSHMVESRPLPS-IIDFTRLLNVIAKMKKFDVVINLCKHLQIMGVSNDLYTCNL 111

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+NCFC+  +       LG++++  F PD   FTSLI G C  +RI EA ++  ++   G
Sbjct: 112 LMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEEAMSMVNQMVEMG 171

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
            KP+V+ Y+T+I+ LC+ GH   AL+LF +M N   +  VV                   
Sbjct: 172 IKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLVNGLCNSGRWRDAD 231

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      KP+ +T+  +ID   KEG +  AKEL+ +M   +I P++ TY SLI+G 
Sbjct: 232 LLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSIAPNIFTYTSLINGL 291

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C     +EA  +   M  +G  PDVV +  +++  CK  K+++A ++   M  +G+  NT
Sbjct: 292 CMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVEDAMKIFYEMSQKGLTGNT 351

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++TL+ GF L G+ N A+E+F  M S G    + +Y
Sbjct: 352 ITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTY 389



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 156/300 (52%), Gaps = 10/300 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+ M    P +  +  +   L K  H D  LSLF ++ + G+ PD+  Y  L
Sbjct: 159 EAMSMVNQMVEM-GIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSL 217

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  C  GR     ++L  +++    PD + F +LI     E ++++A  L+ ++     
Sbjct: 218 VNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMIQMSI 277

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+ TY++LINGLC  G    A  +F  M          C P+ V YT++I+G CK   
Sbjct: 278 APNIFTYTSLINGLCMEGRLDEARQMFYLMETKG------CFPDVVAYTSLINGFCKCKK 331

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A ++F +M  K +  + +TY +LI GF      N A  +   M+ +GV P++ T+NV
Sbjct: 332 VEDAMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEVFGHMVSRGVPPNIRTYNV 391

Query: 329 IMDELCKNGKMDEASRLLELMILR---GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++  LC NGK+++A  + E M  R   GV PN  T++ L+ G C  G++  A  +F  M+
Sbjct: 392 LLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIRTYNVLLHGLCYNGKLEKALMVFGDMQ 451



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 87/155 (56%), Gaps = 4/155 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDLY 143
           PN A  +F +M++ R  PP + ++N+L  CL      +  L +F+ +      G+ P++ 
Sbjct: 367 PNVAQEVFGHMVS-RGVPPNIRTYNVLLHCLCYNGKVNKALMIFEDMQKREIDGVPPNIR 425

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TYN+L++  C  G++    +V G + +       + +T +I+G+C   ++ +A  LF  L
Sbjct: 426 TYNVLLHGLCYNGKLEKALMVFGDMQKRDMDIGIITYTIIIQGMCKAGKVKDALNLFCSL 485

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            + G KPNV+TY+T+I+GL R G  + A  LF +M
Sbjct: 486 PSKGVKPNVVTYTTMISGLFREGLMLEAHVLFRKM 520


>gi|357505881|ref|XP_003623229.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498244|gb|AES79447.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 770

 Score =  204 bits (519), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 177/345 (51%), Gaps = 42/345 (12%)

Query: 88  NEAFCIFDYMLNMRP-SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP------ 140
           +E+   F + L   P S P  +S N L   L K KHYD V+S+  ++ S  +FP      
Sbjct: 39  SESLSHFHHTLQDYPNSIPSYSSCNTLIDNLRKAKHYDHVISVHSKMASVSVFPCFTSLS 98

Query: 141 -----------------------------DLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
                                        ++Y +N+L+  FC+ G       +   + R+
Sbjct: 99  ALIESFVNTQKPSFAFGVLGLIMKRGFHLNVYNFNLLLKGFCQSGDSHKAMDLFCMMKRN 158

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           C  PD V++ ++I GLC   R++EA  LF ++K   CKPN +T+S LI+G C+ G     
Sbjct: 159 CLIPDCVSYNTVINGLCKGKRLVEAKELFKEMKGGECKPNSVTFSALIDGFCKNGDVEEG 218

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             L EEM     K G+  + +   Y+ +I G C +G +++ KELF +M  KN+ P+VVTY
Sbjct: 219 FGLLEEME----KMGL--EGDVFVYSALISGFCSKGDIERGKELFNEMLRKNVTPNVVTY 272

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           + L++  C    W EA  +L  M    V+PDVV + V+ D L KNG+  +A ++L+LM+ 
Sbjct: 273 SCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGLSKNGRASDAIKVLDLMVK 332

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           RG  PN  T++ +++G C  GRV+ A  +  +M   G K  V +Y
Sbjct: 333 RGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTY 377



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/304 (28%), Positives = 147/304 (48%), Gaps = 5/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ ML    +P  +T ++ L   L K + +     +   +    + PD+  Y +L +  
Sbjct: 256 LFNEMLRKNVTPNVVT-YSCLMNALCKKQKWKEAAQMLDTMTGCKVRPDVVAYTVLADGL 314

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K GR S    VL  +++    P+ V + ++I GLC E R+ +A  +   +   G KP+V
Sbjct: 315 SKNGRASDAIKVLDLMVKRGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDV 374

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TYSTL+ GLC  G    A++L   + +   +F +  KP+   +  +I  LCK+  +  A
Sbjct: 375 VTYSTLVKGLCGVGKIDEAVDLLNLLMSK--EFHI--KPDVFAFNLVIQELCKQRRLRHA 430

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           K ++  M ++    ++VTYN LI G+  A    +A  L  + +D G+ P+  T+ V+++ 
Sbjct: 431 KRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSGISPNAATYTVLING 490

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK   +  A  L       G  P  S ++TLM   C    V  A+ LF  M +      
Sbjct: 491 LCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPD 550

Query: 393 VFSY 396
           V S+
Sbjct: 551 VVSF 554



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 148/303 (48%), Gaps = 9/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+  R   P   ++N +   L K    D  L + + +   G  PD+ TY+ 
Sbjct: 321 SDAIKVLDLMVK-RGEEPNNVTYNAIINGLCKEGRVDDALGILETMAKKGKKPDVVTYST 379

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           L+   C +G++     +L  ++   F   PD  AF  +I+ LC + R+  A  ++  +  
Sbjct: 380 LVKGLCGVGKIDEAVDLLNLLMSKEFHIKPDVFAFNLVIQELCKQRRLRHAKRVYYTMVE 439

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   N++TY+ LI+G    G    AL L+++  +          PN  TYT +I+GLCK
Sbjct: 440 RGFPSNIVTYNILIDGYLSAGKLTKALELWKDAVDSG------ISPNAATYTVLINGLCK 493

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              +  AK LF + +     P V  YN+L+   C  +   +A  L  EM +    PDVV+
Sbjct: 494 MQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCRESSVEQARNLFQEMRNANHDPDVVS 553

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN+I+D   K G ++ A  LL  M+   + P+  TFS L++ F   G+++ A  L+  M 
Sbjct: 554 FNIIIDGTLKAGDVESAKELLLEMLNMNLVPDNITFSILINRFLKLGQLDEAASLYERMV 613

Query: 386 SMG 388
           S G
Sbjct: 614 SCG 616



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 84/265 (31%), Positives = 134/265 (50%), Gaps = 6/265 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FNL+   L K +       ++  +   G   ++ TYNILI+ +   G+++    +
Sbjct: 409 PDVFAFNLVIQELCKQRRLRHAKRVYYTMVERGFPSNIVTYNILIDGYLSAGKLTKALEL 468

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               + S  +P+A  +T LI GLC    +  A  LF K +A G +P V  Y+TL+  LCR
Sbjct: 469 WKDAVDSGISPNAATYTVLINGLCKMQMLSIAKGLFNKKRASGTRPTVSEYNTLMASLCR 528

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A NLF+EM N N        P+ V++  IIDG  K G V+ AKEL L+M + N+
Sbjct: 529 ESSVEQARNLFQEMRNANHD------PDVVSFNIIIDGTLKAGDVESAKELLLEMLNMNL 582

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +T++ LI+ F      +EA  L   M+  G  PD V F+ ++      GK ++   
Sbjct: 583 VPDNITFSILINRFLKLGQLDEAASLYERMVSCGHVPDAVLFDSLLKGYSLKGKTEKVVS 642

Query: 345 LLELMILRGVNPNTSTFSTLMDGFC 369
           +L+ M  + V  ++   ST++   C
Sbjct: 643 MLQQMADKDVVLDSKLTSTILACLC 667


>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
 gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
          Length = 729

 Score =  203 bits (517), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD ML+ R   P + ++++L     K   Y   + L   + + G  PD+ TYN+L
Sbjct: 180 DALAVFDDMLH-RGCSPSVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVL 238

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C  G V     +L  +      PDAV +T ++K LC   R  E   LF ++ +  C
Sbjct: 239 INAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKC 298

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +T++T++  LC+ G    A+ + + M+         C P+ VTY++I+DGLC  G 
Sbjct: 299 APDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHG------CIPDIVTYSSILDGLCDVGR 352

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A EL  ++K     PD + Y +++ G C    W  A  L+ EM+     PD VTFN 
Sbjct: 353 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNT 412

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+ G +D A +++E M   G NP+  T+++++DG C    ++ A EL  +++S G
Sbjct: 413 VIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYG 472

Query: 389 CKHTVFSY 396
           CK  + ++
Sbjct: 473 CKPDIVTF 480



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 156/292 (53%), Gaps = 7/292 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M + + +P  +T FN +   L +    D  + +   ++  G  PD+ TY+ +++  
Sbjct: 289 LFAEMASNKCAPDEVT-FNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGL 347

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C +GRV     +L R+      PD +A+T+++KGLC+  +   A  L  ++    C P+ 
Sbjct: 348 CDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDE 407

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +T++T+I  LC+ G    A+ + E+M+  NG     C P+ VTY +IIDGLC E  +D A
Sbjct: 408 VTFNTVIASLCQKGLVDRAIKVVEQMSE-NG-----CNPDIVTYNSIIDGLCNERCIDDA 461

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            EL   ++     PD+VT+N+L+ G C  + W +A  L++ MM     PD  TFN ++  
Sbjct: 462 MELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITS 521

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LC+ G + +A   L++M   G  PN ST++ ++D     G+   A +L   M
Sbjct: 522 LCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLKAGKTQEALKLLSGM 573



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  +   L  ++ +  V  LF  + S    PD  T+N ++   C+ G V     V
Sbjct: 265 PDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRAIKV 324

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +      PD V ++S++ GLC   R+ +A  L ++LK++GCKP+ I Y+T++ GLC 
Sbjct: 325 VDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCS 384

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L  EM   +      C P+ VT+ T+I  LC++G VD+A ++  QM +   
Sbjct: 385 IEQWEHAEELMAEMVCSD------CPPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGC 438

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NPD+VTYNS+I G C     ++A  LL  +   G +PD+VTFN ++  LC   + ++A +
Sbjct: 439 NPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQ 498

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L+  M+     P+ +TF+T++   C  G +  A E    M   GC
Sbjct: 499 LMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGC 543



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 148/294 (50%), Gaps = 14/294 (4%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P P+   N+L   L           +F  L ++     + TYN ++N +C+ GR+     
Sbjct: 95  PLPVVPCNILIKRLCSGGRVADAERVFATLGASAT---VVTYNTMVNGYCRAGRIEDARR 151

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++  +    F PD   F  LI+ LC   R+ +A A+F  +   GC P+V+TYS L++  C
Sbjct: 152 LISGMP---FPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTYSILLDATC 208

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           +      A+ L +EM A G       C+P+ VTY  +I+ +C EG VD+A  +   +   
Sbjct: 209 KASGYRQAMVLLDEMRAKG-------CEPDIVTYNVLINAMCNEGDVDEALNILSDLPSH 261

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              PD VTY  ++   C +  W E   L  EM      PD VTFN I+  LC+ G +D A
Sbjct: 262 GCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKCAPDEVTFNTIVTSLCQQGLVDRA 321

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++++ M   G  P+  T+S+++DG C  GRV+ A EL   ++S GCK    +Y
Sbjct: 322 IKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAY 375



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 139/284 (48%), Gaps = 8/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L   +  D  + L   L S G  PD+ T+N L+   C + R      +
Sbjct: 440 PDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQL 499

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ S   PDA  F ++I  LC +  +++A      +   GC PN  TY+ +++ L +
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T  AL L   M NG         P+ +TY T+I  + K G +++A +L   M    +
Sbjct: 560 AGKTQEALKLLSGMTNGT--------PDLITYNTVISNITKAGKMEEALDLLRVMVSNGL 611

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD +TY SL +G C  +  + A  +L  + D G+ PD   +N I+   C+N + D A  
Sbjct: 612 SPDTITYRSLAYGICREDGTDRAIRMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAID 671

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
               M+  G  P+ ST+  L++       ++ AK+L V++ S+G
Sbjct: 672 CFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLG 715



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN +   L +    D  + + ++++  G  PD+ TYN +I+  C    +     
Sbjct: 404 PPDEVTFNTVIASLCQKGLVDRAIKVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAME 463

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +      PD V F +L+KGLC+  R  +A  L   +    C P+  T++T+I  LC
Sbjct: 464 LLSNLQSYGCKPDIVTFNTLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLC 523

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A+   + MA  NG     C PN  TY  ++D L K G   +A +L   M   N
Sbjct: 524 QKGLLLQAIETLKIMAE-NG-----CIPNQSTYNIVVDALLKAGKTQEALKLLSGMT--N 575

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD++TYN++I     A    EA  LL  M+  G+ PD +T+  +   +C+    D A 
Sbjct: 576 GTPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTITYRSLAYGICREDGTDRAI 635

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+L  +   G++P+ + ++ ++ GFC   R + A + F  M S GC     +Y
Sbjct: 636 RMLCRLQDMGLSPDATFYNDILLGFCQNWRTDIAIDCFAHMVSSGCMPDESTY 688



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 72/218 (33%), Positives = 110/218 (50%), Gaps = 12/218 (5%)

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           C     V    LIK LC+  R+ +A  +F  L   G    V+TY+T++NG CR G    A
Sbjct: 93  CLPLPVVPCNILIKRLCSGGRVADAERVFATL---GASATVVTYNTMVNGYCRAGRIEDA 149

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             L           G+   P+T T+  +I  LC  G V  A  +F  M  +  +P VVTY
Sbjct: 150 RRLIS---------GMPFPPDTFTFNPLIRALCVRGRVPDALAVFDDMLHRGCSPSVVTY 200

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           + L+   C A+ + +A  LL EM  +G +PD+VT+NV+++ +C  G +DEA  +L  +  
Sbjct: 201 SILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSDLPS 260

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            G  P+  T++ ++   C + R    +ELF  M S  C
Sbjct: 261 HGCKPDAVTYTPVLKSLCGSERWKEVEELFAEMASNKC 298



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 98/225 (43%), Gaps = 10/225 (4%)

Query: 97  MLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           M+NM  S  PP  T+FN +   L +       +   K +   G  P+  TYNI+++   K
Sbjct: 500 MVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQSTYNIVVDALLK 559

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G+      +L  +     TPD + + ++I  +    ++ EA  L   + + G  P+ IT
Sbjct: 560 AGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEALDLLRVMVSNGLSPDTIT 617

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y +L  G+CR   T  A+ +   + +     G+   P+   Y  I+ G C+    D A +
Sbjct: 618 YRSLAYGICREDGTDRAIRMLCRLQD----MGL--SPDATFYNDILLGFCQNWRTDIAID 671

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            F  M      PD  TY  L+    Y    +EA  LL+ +   GV
Sbjct: 672 CFAHMVSSGCMPDESTYIILLEALAYECLLDEAKQLLVNLCSLGV 716


>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
 gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
          Length = 609

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 106/310 (34%), Positives = 170/310 (54%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M   R  PP L ++N+L   L K         + K++   G  P++ T+N 
Sbjct: 196 EEAMKLLEEMRE-RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNS 254

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G V     +LG ++     P+ V +++LI GLC   + +EA  +  ++K  G
Sbjct: 255 LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRG 314

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TYS LI+GLC+      A  +   MA G+G     C P+ V Y++II   CK G
Sbjct: 315 VTPDAFTYSALIHGLCKADKIEEAEQMLRRMA-GSG-----CTPDVVVYSSIIHAFCKSG 368

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTF 326
            + +A++   +M+ +  +PDVVTYN++I G C      EA  +L +M + G V PDVVT+
Sbjct: 369 KLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDVLPDVVTY 428

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + +++ LCK+  + EA +LL+ M   G NP+  T++T++DG C  GR+  A+ L   M+ 
Sbjct: 429 STVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKR 488

Query: 387 MGCKHTVFSY 396
            GC   V +Y
Sbjct: 489 AGCAPNVVTY 498



 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 161/287 (56%), Gaps = 8/287 (2%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            MRP+   + +++ L   L K++ +     + + + + G+ PD +TY+ LI+  CK  ++
Sbjct: 279 GMRPN---VVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKI 335

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +L R+  S  TPD V ++S+I   C   +++EA     +++     P+V+TY+T+
Sbjct: 336 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 395

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+GLC+ G    A  + E+M            P+ VTY+T+I+GLCK   + +A++L  +
Sbjct: 396 IDGLCKLGKIAEAQVILEQMQESGDVL-----PDVVTYSTVINGLCKSDMLVEAQKLLDR 450

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M     NPDVVTY ++I G C      EA  LL  M   G  P+VVT+  ++  LCK  K
Sbjct: 451 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARK 510

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +DEA R++E M   G  PN  T++T+++G C++GR+  A++L   M+
Sbjct: 511 VDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 557



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 10/301 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M     +P   T   L+ G L K    +    + +R+  +G  PD+  Y+ +
Sbjct: 302 EAKEVLEEMKTRGVTPDAFTYSALIHG-LCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 360

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG- 207
           I+ FCK G++      L  + +   +PD V + ++I GLC   +I EA  +  +++  G 
Sbjct: 361 IHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGD 420

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TYST+INGLC++   + A  L + M          C P+ VTYTTIIDGLCK G
Sbjct: 421 VLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAG------CNPDVVTYTTIIDGLCKCG 474

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A+ L   MK     P+VVTY +LI G C A   +EA  ++ EM + G  P++VT+N
Sbjct: 475 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYN 534

Query: 328 VIMDELCKNGKMDEASRLLELMI--LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            +++ LC +G++ EA +L++ M       +P+ +T+ T+++    +  V  A++L   M+
Sbjct: 535 TMVNGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMK 594

Query: 386 S 386
           S
Sbjct: 595 S 595



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 152/288 (52%), Gaps = 9/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N L   L + K +     LF+        PD+ +YNI+I+ FC  G +     +L  +
Sbjct: 79  SWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEM 138

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
             + F PDA   T +I  + A +  ++ A     L++ GC PNV+TY+ LI    R    
Sbjct: 139 KSAGFAPDAFTHTPIITAM-ANAGDLDGA--MDHLRSMGCDPNVVTYTALIAAFARAKKL 195

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ L EEM          C PN VTY  ++D LCK   V  A+++  +M +    P+V
Sbjct: 196 EEAMKLLEEMRERG------CPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNV 249

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +T+NSL+ GFC   + ++A  LL  M+ +G++P+VVT++ ++D LCK+ K  EA  +LE 
Sbjct: 250 MTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEE 309

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  T+S L+ G C   ++  A+++   M   GC   V  Y
Sbjct: 310 MKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVY 357



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N++             L L + + S G  PD +T+  +I      G +      
Sbjct: 110 PDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDH 169

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +   C  P+ V +T+LI       ++ EA  L  +++  GC PN++TY+ L++ LC+
Sbjct: 170 LRSM--GC-DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCK 226

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++ ++M  G   F     PN +T+ +++DG CK G VD A++L   M  K +
Sbjct: 227 LSMVGAAQDVVKKMIEGG--FA----PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGM 280

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTY++LI G C +  + EA  +L EM  +GV PD  T++ ++  LCK  K++EA +
Sbjct: 281 RPNVVTYSALIDGLCKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQ 340

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L  M   G  P+   +S+++  FC +G++  A++    M        V +Y
Sbjct: 341 MLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTY 392



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 128/250 (51%), Gaps = 26/250 (10%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F+  A ++ SL++ L    +  EA  LF       C+P+V +Y+ +I+G C  G    AL
Sbjct: 73  FSHTAFSWNSLLQVLVRCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAAL 132

Query: 233 NLFEE-------------------MANGNGKFGVV-------CKPNTVTYTTIIDGLCKE 266
            L EE                   MAN     G +       C PN VTYT +I    + 
Sbjct: 133 ELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMGCDPNVVTYTALIAAFARA 192

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +++A +L  +M+++   P++VTYN L+   C  +    A  ++ +M++ G  P+V+TF
Sbjct: 193 KKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTF 252

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK G +D+A +LL +M+ +G+ PN  T+S L+DG C + +   AKE+   M++
Sbjct: 253 NSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKT 312

Query: 387 MGCKHTVFSY 396
            G     F+Y
Sbjct: 313 RGVTPDAFTY 322


>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
 gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
          Length = 424

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 180/344 (52%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML+  P PP +  FN L   + + K Y+TV+SLFK +   G+  ++ T +I
Sbjct: 22  DDALASFNRMLDRNPQPP-IIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTLSI 80

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +  V +GF V G+ L+  F PD V FT+LI G+C   +   AA L  ++   G
Sbjct: 81  LINCFCFLHHVDYGFSVFGKTLKRGFKPDVVIFTTLIDGVCRIGKTELAAGLLKEMGLVG 140

Query: 208 CKPNVIT-----------------------------------YSTLINGLCRTGHTIVAL 232
           C P+V+T                                   YS  ING C+      A+
Sbjct: 141 CVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAM 200

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF+EM++     GVV  PN VTY T+I  LC+      A+ LF +M    ++PD++ Y+
Sbjct: 201 ELFDEMSHR----GVV--PNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYS 254

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +L+ GFC   + +E   L  EM  + V+PD+V + +I++ +C++ K+ +A  +L  +I+ 
Sbjct: 255 TLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVE 314

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+ P+  T++ L+DG C  G +  A  LF  ME  GC     SY
Sbjct: 315 GLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSY 358



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 84/263 (31%), Positives = 137/263 (52%), Gaps = 7/263 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +T  +L+ G  ++ K  D V  +F  + S GL PD+Y+Y+I IN +CK+ ++     
Sbjct: 143 PDVVTCNSLMRGYCSQGK-IDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAME 201

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      P+AV + +LIK LC   R  +A  LF K+ A G  P+++ YSTL++G C
Sbjct: 202 LFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYSTLLDGFC 261

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+    L LF+EM         + KP+ V YT II+G+C+   V  AKE+  ++  + 
Sbjct: 262 KQGNLDEMLVLFQEMQRR------LVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG 315

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDV TY +L+ G C      EA  L  +M + G  P   ++NV++    ++       
Sbjct: 316 LKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSYNVLLQGCLQHNDTSTVV 375

Query: 344 RLLELMILRGVNPNTSTFSTLMD 366
           +L+  M  RG   +  T + L D
Sbjct: 376 QLIHEMADRGFYADAVTRTFLKD 398



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 118/241 (48%), Gaps = 6/241 (2%)

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G +        R+L     P  + F  L+  +    +     +LF +++  G K NV T 
Sbjct: 19  GNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVCTL 78

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           S LIN  C   H     ++F +      K G   KP+ V +TT+IDG+C+ G  + A  L
Sbjct: 79  SILINCFCFLHHVDYGFSVFGKTL----KRGF--KPDVVIFTTLIDGVCRIGKTELAAGL 132

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +M      PDVVT NSL+ G+C     ++   +   M+ +G++PDV ++++ ++  CK
Sbjct: 133 LKEMGLVGCVPDVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCK 192

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
             K+DEA  L + M  RGV PN  T++TL+   C   R   A+ LF  M + G    + +
Sbjct: 193 VEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILA 252

Query: 396 Y 396
           Y
Sbjct: 253 Y 253



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 105/216 (48%), Gaps = 8/216 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M + R   P   ++N L   L +         LF+++ + GL PD+  Y+ 
Sbjct: 197 DEAMELFDEM-SHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMCACGLSPDILAYST 255

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G +    V+   + R    PD V +T +I G+C   ++ +A  + ++L   G
Sbjct: 256 LLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVKDAKEVLSRLIVEG 315

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V TY+ L++GLCR G  I AL LF +M          C P + +Y  ++ G  +  
Sbjct: 316 LKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDG------CMPGSCSYNVLLQGCLQHN 369

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                 +L  +M D+    D VT  + +  F   ND
Sbjct: 370 DTSTVVQLIHEMADRGFYADAVT-RTFLKDFLPGND 404



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 40/82 (48%)

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
           Y  + ++A      M+D+  QP ++ FN ++  + +  K +    L + M  RG+  N  
Sbjct: 17  YFGNLDDALASFNRMLDRNPQPPIIEFNRLLSSVVRMKKYETVVSLFKEMEFRGIKYNVC 76

Query: 360 TFSTLMDGFCLTGRVNHAKELF 381
           T S L++ FC    V++   +F
Sbjct: 77  TLSILINCFCFLHHVDYGFSVF 98


>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
 gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
          Length = 1059

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 178/326 (54%), Gaps = 11/326 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S    ++  I  ++AF +F  ML  RP  P +  F  +   +AK   +D V+ LF
Sbjct: 584 RERLRS----ELHCIKFDDAFGLFCEMLQSRP-IPSIVDFTRVLTAIAKMNKFDIVIYLF 638

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
            ++ + G+  DLY++ ILI+CFC+  R S    +LG++++  F P  V   SL+ G C  
Sbjct: 639 HKMENLGISHDLYSFTILIHCFCRCSRFSLALALLGKMMKLGFQPSIVTLGSLLNGFCQG 698

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           +R  EA +L   +   G +PNV+ Y+T+INGLC+      AL +F  M     K G+V  
Sbjct: 699 NRFQEAVSLVDSMAELGLEPNVVIYNTVINGLCKNRDLNNALEIFYGME----KKGIV-- 752

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            + VTY T+I GLC  G    A  L   M  + I+P+V+ + +LI  F    +  EA  L
Sbjct: 753 ADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNL 812

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             EM+ + V P+++T+N +++  C  G++ +A  + +LM+ +G  P+  T++TL+ GFC 
Sbjct: 813 YKEMIRRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKGCFPDVVTYNTLITGFCK 872

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
           + RV    +LF  M   G     F+Y
Sbjct: 873 SKRVEDGMKLFCEMTHQGLVGDAFTY 898



 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 183/347 (52%), Gaps = 31/347 (8%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G + +I   +A  +F  M+  +P  P +  F  L   +A  + Y+TV+   +++   G+ 
Sbjct: 39  GFLHSIRFEDALDLFLEMVQSQP-LPSVVDFTRLLTAIANLRRYETVIYFSQQMELFGIS 97

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
            DLY++ ILI+CFC+  R+S    +LG++++  + P  V F SL+ G C  +RI +A +L
Sbjct: 98  HDLYSFTILIHCFCRCSRLSLALSILGKMMKLGYDPSIVTFGSLLHGFCLRNRIHDAFSL 157

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG------------------ 241
              +   G +PNV+ Y+TLI+ LC+ G   +AL L  EM                     
Sbjct: 158 VASMVKSGYEPNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLC 217

Query: 242 -NGKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            +G++    +           P+  T+T +ID   K+G +D+A+EL+ QM   +I P+ V
Sbjct: 218 YSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTV 277

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI+G C       A      M  +G  P+VVT+N +++  CK+ ++++  +L + M
Sbjct: 278 TYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVEDGMKLFQRM 337

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+  +T T++TL+ G+C  G++  AK++F  M S G    + ++
Sbjct: 338 YREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITH 384



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             EA  + D M  +    P +  +N +   L K +  +  L +F  +   G+  D  TYN 
Sbjct: 702  QEAVSLVDSMAEL-GLEPNVVIYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNT 760

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            LI+  C  GR +    +L  +++    P+ + FT+LI     E  ++EA  L+ ++    
Sbjct: 761  LISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRS 820

Query: 208  CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              PN++TY++LING C  G    A ++F+ M +        C P+ VTY T+I G CK  
Sbjct: 821  VHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG------CFPDVVTYNTLITGFCKSK 874

Query: 268  FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             V+   +LF +M  + +  D  TYN+LIHG+C A   N A  +   M+D GV PD+VT+N
Sbjct: 875  RVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVPPDIVTYN 934

Query: 328  VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++D LC NGK+++A  ++E +    ++ +  T++ ++ G C   +V  A  LF S+   
Sbjct: 935  ILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRK 994

Query: 388  GCKHTVFSY 396
            G K    +Y
Sbjct: 995  GVKLDAIAY 1003



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 144/282 (51%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N L   L  +  +     + + +    + PD++T+  LI+ F K G +     +  
Sbjct: 206 LVTYNTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYK 265

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++L+S   P+ V + SLI GLC   R+  A   F  + + GC PNV+TY+TLING C++ 
Sbjct: 266 QMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSR 325

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                + LF+ M     + G+V   +T TY T+I G C+ G +  AK++F  M    + P
Sbjct: 326 RVEDGMKLFQRMY----REGLV--GDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTP 379

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D++T+  L+HG C   +   A     +M        +V +N+++  LCK  K++EA  L 
Sbjct: 380 DIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELF 439

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             + + GV P+  T++ ++ G C  G    A ELF  M+  G
Sbjct: 440 CRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDG 481



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 134/293 (45%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFV 163
           P +  +N L  CL K    +  L L   +   G L  DL TYN L+   C  G       
Sbjct: 168 PNVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTYNTLLTGLCYSGEWRQAAR 227

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  + +    PD   FT+LI     +  + EA  L+ ++      PN +TY++LINGLC
Sbjct: 228 ILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQMLQSSIGPNTVTYNSLINGLC 287

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A   F+ MA+        C PN VTY T+I+G CK   V+   +LF +M  + 
Sbjct: 288 MHGRLYHAKKTFDLMASKG------CFPNVVTYNTLINGFCKSRRVEDGMKLFQRMYREG 341

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  D  TYN+LIHG+C       A  +   M+  GV PD++T  +++  LC NG++  A 
Sbjct: 342 LVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCGVTPDIITHCILLHGLCVNGEIGSAM 401

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                M           ++ ++ G C   +V  A ELF  +   G K    +Y
Sbjct: 402 VKFNDMRSGEKYLGIVAYNIMIHGLCKADKVEEAWELFCRLPVEGVKPDARTY 454



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 101  RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS- 159
            R   P +  F  L     K  +     +L+K +    + P++ TYN LIN FC  GR+  
Sbjct: 784  RKIDPNVIFFTALIDTFVKEGNLLEAKNLYKEMIRRSVHPNILTYNSLINGFCIQGRLGD 843

Query: 160  --HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
              H F ++  + + CF PD V + +LI G C   R+ +   LF ++   G   +  TY+T
Sbjct: 844  AKHMFDLM--VSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNT 900

Query: 218  LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            LI+G C+ G   VA  +F  M +     GV   P+ VTY  ++D LC  G ++KA  +  
Sbjct: 901  LIHGYCQAGKLNVAQKVFNRMVD----CGV--PPDIVTYNILLDCLCNNGKIEKALVMVE 954

Query: 278  QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
             ++   ++ D++TYN +I G C  +   EA CL   +  +GV+ D + +  ++  LC+NG
Sbjct: 955  DLQKNQMDVDIITYNIIIQGMCRNDKVKEAWCLFRSLTRKGVKLDAIAYITMISGLCRNG 1014

Query: 338  KMDEASRLLELMILRGVNPNTSTF-STLMDGF 368
               EA +L   M   G  P+   +  TL D +
Sbjct: 1015 LRREADKLCTRMKEDGFMPSERIYDETLRDHY 1046



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 7/232 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  ++  ML     P  +T  +L+ G     + Y    + F  + S G FP++ TYN 
Sbjct: 258 DEAQELYKQMLQSSIGPNTVTYNSLINGLCMHGRLYHAKKT-FDLMASKGCFPNVVTYNT 316

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FCK  RV  G  +  R+ R     D   + +LI G C   ++  A  +F+ + + G
Sbjct: 317 LINGFCKSRRVEDGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVAKDIFSWMVSCG 376

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++IT+  L++GLC  G    A+  F +M +G    G+      V Y  +I GLCK  
Sbjct: 377 VTPDIITHCILLHGLCVNGEIGSAMVKFNDMRSGEKYLGI------VAYNIMIHGLCKAD 430

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            V++A ELF ++  + + PD  TY  +I G C      EA+ L   M + G+
Sbjct: 431 KVEEAWELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELFRRMKEDGI 482


>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g63070, mitochondrial; Flags: Precursor
 gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
 gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 590

 Score =  202 bits (515), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/345 (32%), Positives = 180/345 (52%), Gaps = 43/345 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL +++ + G+  +LYTY+I
Sbjct: 57  DDAIGLFGDMVKSRPFPS-IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 148 LINCFCKMGRVSHGFVVLGRILR-----------------------------------SC 172
            IN FC+  ++S    +LG++++                                     
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + PD V FT+L+ GL   ++  EA AL  ++   GC+P+++TY  +INGLC+ G   +AL
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           NL  +M  G        + + V Y TIIDGLCK   +D A +LF +M+ K I PDV TYN
Sbjct: 236 NLLNKMEKGK------IEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL- 351
            LI   C    W++A+ LL +M+++ + PD+V FN ++D   K GK+ EA +L + M+  
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKS 349

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   P+   ++TL+ GFC   RV    E+F  M   G      +Y
Sbjct: 350 KHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 394



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 155/280 (55%), Gaps = 7/280 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K KH D    LF ++ + G+ PD++TYN LI+C C  GR S    +L  +L
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHT 228
                PD V F +LI     E +++EA  L+ ++ K+  C P+V+ Y+TLI G C+    
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRV 372

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
              + +F EM+    + G+V   NTVTYTT+I G  +    D A+ +F QM    ++PD+
Sbjct: 373 EEGMEVFREMS----QRGLV--GNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDI 426

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +TYN L+ G C   +   A  +   M  + ++ D+VT+  +++ LCK GK+++   L   
Sbjct: 427 MTYNILLDGLCNNGNVETALVVFEYMQKRDMKLDIVTYTTMIEALCKAGKVEDGWDLFCS 486

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + L+GV PN  T++T+M GFC  G    A  LFV M+  G
Sbjct: 487 LSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFVEMKEDG 526



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 163/339 (48%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+ M   P  +T   L+ G     K  + V +L +R+   G  PDL TY  
Sbjct: 162 SEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAV-ALVERMVVKGCQPDLVTYGA 220

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK G       +L ++ +     D V + ++I GLC    + +A  LF K++  G
Sbjct: 221 VINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKG 280

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
            KP+V TY+ LI+ LC  G    A  L  +M   N    +V                   
Sbjct: 281 IKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAE 340

Query: 249 -----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                      C P+ V Y T+I G CK   V++  E+F +M  + +  + VTY +LIHG
Sbjct: 341 KLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYTTLIHG 400

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           F  A D + A  +  +M+  GV PD++T+N+++D LC NG ++ A  + E M  R +  +
Sbjct: 401 FFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQKRDMKLD 460

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++T+++  C  G+V    +LF S+   G K  V +Y
Sbjct: 461 IVTYTTMIEALCKAGKVEDGWDLFCSLSLKGVKPNVVTY 499



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +L + +  + ++ +A  LF  +      P+++ +S L++ + +     + ++L E+M N 
Sbjct: 45  NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQN- 103

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
               G+    N  TY+  I+  C+   +  A  +  +M      P +VT NSL++GFC+ 
Sbjct: 104 ---LGI--SHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           N  +EA  L+ +M++ G QPD VTF  ++  L ++ K  EA  L+E M+++G  P+  T+
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +++G C  G  + A  L   ME    +  V  Y
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253


>gi|356561399|ref|XP_003548969.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g12300, mitochondrial-like [Glycine max]
          Length = 422

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 114/309 (36%), Positives = 180/309 (58%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ ML MR +PP +  FN + G   K K+Y   +SL K++   G+ P+L T NI
Sbjct: 36  DDAVSQFNRMLLMRHTPP-IIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVTLNI 94

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFC +G ++  F VLG+IL+  + P+ +  T+LIKGLC +  + ++     KL A G
Sbjct: 95  LINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLVAQG 154

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N ++  TL+NGLC+ G    A+ L   + + +         N V Y TIIDGLCK+ 
Sbjct: 155 FQINHVSCGTLLNGLCKIGEMRGAMKLLRVIEDRS------TITNVVMYNTIIDGLCKDK 208

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A +L+ +M  +   P+V+TY++LI GFC A    EA  LL EM+ + + PDV T+N
Sbjct: 209 LVNEAYDLYSEMDVRGNFPNVITYHTLICGFCLAGQLMEAFGLLKEMILKNIDPDVYTYN 268

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++MD LCK GK   A  L++ +  R    +  T+++L+DG C    ++ A  LF  M+  
Sbjct: 269 ILMDALCKEGK-SYALDLIDEIHRRRQPADVVTYTSLLDGXCKNXYLDKAIALFKKMKER 327

Query: 388 GCKHTVFSY 396
             +  V+++
Sbjct: 328 RIQPNVYTH 336



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 84/315 (26%), Positives = 131/315 (41%), Gaps = 63/315 (20%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +F +   +L +   P  LT   L+ G   K +   + L    +L + G   +  +   L+
Sbjct: 108 SFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKS-LHFHDKLVAQGFQINHVSCGTLL 166

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK+G +     +L  I       + V + ++I GLC +  + EA  L++++   G  
Sbjct: 167 NGLCKIGEMRGAMKLLRVIEDRSTITNVVMYNTIIDGLCKDKLVNEAYDLYSEMDVRGNF 226

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV---------VCK---------- 250
           PNVITY TLI G C  G  + A  L +EM   N    V         +CK          
Sbjct: 227 PNVITYHTLICGFCLAGQLMEAFGLLKEMILKNIDPDVYTYNILMDALCKEGKSYALDLI 286

Query: 251 ---------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP--------------- 286
                     + VTYT+++DG CK  ++DKA  LF +MK++ I P               
Sbjct: 287 DEIHRRRQPADVVTYTSLLDGXCKNXYLDKAIALFKKMKERRIQPNVYTHSXLTGCVKGG 346

Query: 287 -------------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
                              DV TY  +I G C     +EA  +  +M D G  P+ VTF 
Sbjct: 347 RLKNAQEFFQHLLVKGYCIDVWTYTVMISGLCKEGMLDEALAMKXKMEDNGCIPNAVTFE 406

Query: 328 VIMDELCKNGKMDEA 342
           +I+  L +  + D+A
Sbjct: 407 IIICSLFEKDENDKA 421



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 58/123 (47%)

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  VD A   F +M      P ++ +N ++        +  A  L  +M  +G++P++VT
Sbjct: 32  DNVVDDAVSQFNRMLLMRHTPPIIKFNKILGSPVKMKYYPAAISLSKQMEVKGIEPNLVT 91

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N++++  C  G M  +  +L  ++  G  PNT T +TL+ G CL   V  +      + 
Sbjct: 92  LNILINCFCHLGHMAFSFSVLGKILKLGYQPNTLTLTTLIKGLCLKDEVRKSLHFHDKLV 151

Query: 386 SMG 388
           + G
Sbjct: 152 AQG 154


>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
 gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
          Length = 796

 Score =  202 bits (514), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/383 (32%), Positives = 193/383 (50%), Gaps = 53/383 (13%)

Query: 59  TVKDRA-SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
            V DR   LE+ +  R ++       +++ ++A  +FD  L+    P  + +FN L   +
Sbjct: 8   AVSDRCLELERIIGARARAG------SLSVDDALKLFDEFLH-HARPASIIAFNQLLAAV 60

Query: 118 AKTKHY------DTVLSLFKRLNS---TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +           + V+S F R+     + + PD++TY+IL+ CFC+MGR+ HGF   G I
Sbjct: 61  SSASRRGSSSTSELVVSCFNRMIRDCCSKVAPDVFTYSILVGCFCRMGRLEHGFAAFGLI 120

Query: 169 LRSCFTPDAVAFTS-LIKGLCAESRIMEA-AALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           L++ +  + V   + L+KGLC   R+ EA   L  ++   GC PNV++Y+TL+ G C   
Sbjct: 121 LKTGWRVNDVVVVNRLLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDEN 180

Query: 227 HTIVALNLFEEMANG----------------NGKF--GVVCK--------------PNTV 254
               AL L   MA+G                NG F  G V K              PN V
Sbjct: 181 RAEEALELLHMMADGQVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVV 240

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYT +IDGLCK   VD+A+ +F QM DK + P++VTY  LIHG+     W E   +L EM
Sbjct: 241 TYTIVIDGLCKAQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWKEVVRMLKEM 300

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
              G++PD  T+ +++D LCK GK  EA +L + MI +G+ P+ S +  ++ G+   G +
Sbjct: 301 SAHGLEPDCFTYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGAL 360

Query: 375 NHAKELFVSMESMGC--KHTVFS 395
           +        M   G    H +F+
Sbjct: 361 SEMHSFLDLMVGNGISPNHYIFN 383



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/307 (29%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A   + A  +F  M++    P  +T   L+ G L+    +  V+ + K +++ GL PD +
Sbjct: 252 AQVVDRAEGVFQQMIDKGVRPNIVTYTCLIHGYLS-IGQWKEVVRMLKEMSAHGLEPDCF 310

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY +L++  CK G+ +    +   ++R    PD   +  ++ G   +  + E  +    +
Sbjct: 311 TYGLLLDYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLM 370

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G  PN   ++ +     +      A+++F +M            PN V Y T+ID L
Sbjct: 371 VGNGISPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQG------LSPNVVNYATLIDAL 424

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G VD A+  F QM ++ + P++V + SL++G C  + W +A  L  EM++QG+ P+V
Sbjct: 425 CKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNV 484

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V FN IM  LC  G++ +A RL++LM   G  P+  +++ L+ G CL G+ + A +L   
Sbjct: 485 VFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDI 544

Query: 384 MESMGCK 390
           M S+G K
Sbjct: 545 MLSVGLK 551



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+  +   P ++ + ++    A       + S    +   G+ P+ Y +NI+
Sbjct: 327 EARKLFDSMIR-KGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGNGISPNHYIFNIV 385

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              F K   +     +  ++ +   +P+ V + +LI  LC   R+ +A   F ++   G 
Sbjct: 386 FCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAELKFNQMINEGV 445

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++ +++L+ GLC       A  LF EM N          PN V + TI+  LC EG 
Sbjct: 446 APNIVVFTSLVYGLCTIDKWEKAGELFFEMVNQG------IHPNVVFFNTIMCNLCTEGR 499

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V KA+ L   M+     PD+++YN+LI G C     +EA+ LL  M+  G++P+  T+N 
Sbjct: 500 VMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNT 559

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C++G++D+A  + + M+  G+ P   T++T++ G   T R + AKEL+++M + G
Sbjct: 560 LLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSG 619

Query: 389 CKHTVFSY 396
            + ++++Y
Sbjct: 620 KQWSIYTY 627



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 99/353 (28%), Positives = 161/353 (45%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T    +E     D M+    SP     FN++F   AK       + +F ++   GL
Sbjct: 352 HGYATKGALSEMHSFLDLMVGNGISPNHYI-FNIVFCAFAKKAMIGEAMDIFNKMRQQGL 410

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--------- 189
            P++  Y  LI+  CK+GRV    +   +++     P+ V FTSL+ GLC          
Sbjct: 411 SPNVVNYATLIDALCKLGRVDDAELKFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKAGE 470

Query: 190 --------------------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R+M+A  L   ++  G +P++I+Y+ LI G C
Sbjct: 471 LFFEMVNQGIHPNVVFFNTIMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHC 530

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G T  A  L + M        V  KPN  TY T++ G C++G +D A  +F +M    
Sbjct: 531 LVGKTDEASKLLDIM------LSVGLKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNG 584

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P VVTYN+++HG      ++EA  L + M+  G Q  + T+N+I++ L KN  +DEA 
Sbjct: 585 ITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEAL 644

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ + +  + +  +  TF+ ++      GR   A  LF ++ + G    V +Y
Sbjct: 645 KMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTY 697



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 149/320 (46%), Gaps = 32/320 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P  +   +L++G L     ++    LF  + + G+ P++  +N 
Sbjct: 431 DDAELKFNQMINEGVAPNIVVFTSLVYG-LCTIDKWEKAGELFFEMVNQGIHPNVVFFNT 489

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C  GRV     ++  + R    PD +++ +LI+G C   +  EA+ L   + + G
Sbjct: 490 IMCNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLLDIMLSVG 549

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV------------- 254
            KPN  TY+TL++G CR G    A ++F+EM + NG   VV   NT+             
Sbjct: 550 LKPNECTYNTLLHGYCRDGRIDDAYSVFQEMLS-NGITPVVVTYNTILHGLFKTRRFSEA 608

Query: 255 -----------------TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                            TY  I++GL K   VD+A ++F  +  K++  D++T+N +I  
Sbjct: 609 KELYLNMITSGKQWSIYTYNIILNGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGA 668

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                   +A  L   +   G+ PDV T+ +I + L + G ++E   +   M   G  PN
Sbjct: 669 LLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPN 728

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           +   + L+    L G ++ A
Sbjct: 729 SLMLNFLVRRLLLRGDISRA 748



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 116/264 (43%), Gaps = 6/264 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L          D    L   + S GL P+  TYN L++ +C+ GR+   + V
Sbjct: 517 PDIISYNALIRGHCLVGKTDEASKLLDIMLSVGLKPNECTYNTLLHGYCRDGRIDDAYSV 576

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +  TP  V + +++ GL    R  EA  L+  +   G + ++ TY+ ++NGL +
Sbjct: 577 FQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKELYLNMITSGKQWSIYTYNIILNGLSK 636

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL +F+ + + +       + + +T+  +I  L K+G  + A  LF  +    +
Sbjct: 637 NNCVDEALKMFQSLCSKD------LQVDIITFNIMIGALLKDGRKEDAMNLFATISANGL 690

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY  +           E + +  EM   G  P+ +  N ++  L   G +  A  
Sbjct: 691 VPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGCAPNSLMLNFLVRRLLLRGDISRAGA 750

Query: 345 LLELMILRGVNPNTSTFSTLMDGF 368
            L  +  +  +   ST S L+  F
Sbjct: 751 YLSKIDEKNFSLEASTTSMLISLF 774



 Score = 46.2 bits (108), Expect = 0.029,   Method: Compositional matrix adjust.
 Identities = 29/126 (23%), Positives = 56/126 (44%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + +FN++ G L K    +  ++LF  +++ GL PD+ TY ++     + G +     +  
Sbjct: 659 IITFNIMIGALLKDGRKEDAMNLFATISANGLVPDVTTYRLIAENLIEEGSLEEFDGMFS 718

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + +S   P+++    L++ L     I  A A  +K+          T S LI+   R  
Sbjct: 719 EMEKSGCAPNSLMLNFLVRRLLLRGDISRAGAYLSKIDEKNFSLEASTTSMLISLFSREE 778

Query: 227 HTIVAL 232
           H   +L
Sbjct: 779 HQAKSL 784


>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
 gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
          Length = 465

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 168/297 (56%), Gaps = 10/297 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     + K+ +   SL +++ ++G+  D+ TYN L++  CK GR+     +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+  S   PD VA++S + GLC   ++++A  +  +++     PNV+TY+T+++GLC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILDGLCK 269

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    AL + E+MA+ +G     C  N V Y+T++DGLCK G   +A+ +   M     
Sbjct: 270 SGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+SL++G C A    EA   + EM  +G +P+ VT+  ++  LC  G++ EA R
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384

Query: 345 LLELMILRGVN-----PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++E M   G       P+ ST++ L+ G C  GR++ A + F  M S GC     SY
Sbjct: 385 MVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSY 441



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 156/300 (52%), Gaps = 17/300 (5%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           S P + +++ L     K    +    L K + S GL PD   Y  ++   CK  R+    
Sbjct: 78  STPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVASLCKSARLGEAL 137

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +L  ++R+   P  + F +LI G C E  +  A +L  K+ A G K +V+TY+TL++GL
Sbjct: 138 ELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGL 197

Query: 223 CRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           C+ G    A  L E M A+G       C P+ V Y++ + GLCK G V  A ++  QM+D
Sbjct: 198 CKAGRLQEAEQLLERMKASG-------CAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRD 250

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-----VVTFNVIMDELCKN 336
            + +P+VVTYN+++ G C +   + A    +EMM+Q    D     VV ++ ++D LCK 
Sbjct: 251 SHHDPNVVTYNTILDGLCKSGKIDTA----LEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+  EA  ++E M   G  P+  T+S+L++G C  G++  A E    M   GCK    +Y
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 152/298 (51%), Gaps = 13/298 (4%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN L    +K         L + + +  + P++ +YN L+   CK+ R      
Sbjct: 7   PPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEE 66

Query: 164 V----LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
           +    + R  RS  TPD V +++L+ G C   ++ E+  L  ++ + G +P+ + Y+ ++
Sbjct: 67  LVRDMISRGGRS--TPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVV 124

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
             LC++     AL L EEM          C P  +T+ T+I G C+E  ++ A  L  +M
Sbjct: 125 ASLCKSARLGEALELLEEMIRAG------CCPTLITFNTLISGCCREKNLEMADSLLQKM 178

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
               +  DVVTYN+L+ G C A    EA  LL  M   G  PDVV ++  +  LCK+GK+
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM-GCKHTVFSY 396
            +A ++LE M     +PN  T++T++DG C +G+++ A E+   M S  GC   V  Y
Sbjct: 239 LDAHQVLEQMRDSHHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/260 (30%), Positives = 135/260 (51%), Gaps = 14/260 (5%)

Query: 67  EQFLKERCKSSGQG-DITAITP--------NEAFCIFDYMLNMRPS--PPPLTSFNLLFG 115
           EQ L ER K+SG   D+ A +          +       +  MR S   P + ++N +  
Sbjct: 207 EQLL-ERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQMRDSHHDPNVVTYNTILD 265

Query: 116 CLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
            L K+   DT L + +++ S+ G   ++  Y+ +++  CK+GR      V+  + R+   
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD V ++SL+ GLC   +I EA     ++   GCKPN +TY +L++GLC  G    A  +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            EEM++  G  G  C P+  TY  +I GLCK G +D A + F +M+ +  +PD V+Y+++
Sbjct: 386 VEEMSS-GGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444

Query: 295 IHGFCYANDWNEANCLLIEM 314
           + G   +    +A  +L E+
Sbjct: 445 VEGLARSGRALQAEMILSEV 464



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 88/150 (58%), Gaps = 2/150 (1%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C PN+VT+  +++G  K+G     + L   M  ++I P+VV+YN L+ G C    W+EA 
Sbjct: 6   CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLERWHEAE 65

Query: 309 CLLIEMMDQGVQ--PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            L+ +M+ +G +  PD+VT++ ++   CK GK++E+  LL+ +I RG+ P+   ++ ++ 
Sbjct: 66  ELVRDMISRGGRSTPDMVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVVA 125

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             C + R+  A EL   M   GC  T+ ++
Sbjct: 126 SLCKSARLGEALELLEEMIRAGCCPTLITF 155



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 315 MDQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           MD+ G  P+ VTFN +++   K G+  +  RLLE M  R + PN  +++ L++G C   R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARDIQPNVVSYNGLLEGLCKLER 60

Query: 374 VNHAKELFVSMESMGCKHT 392
            + A+EL   M S G + T
Sbjct: 61  WHEAEELVRDMISRGGRST 79



 Score = 46.6 bits (109), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 35/65 (53%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P + TYN LI   CK GR+        R+      PD V+++++++GL    R ++A  +
Sbjct: 401 PSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTIVEGLARSGRALQAEMI 460

Query: 200 FTKLK 204
            ++++
Sbjct: 461 LSEVR 465


>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
          Length = 1048

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 178/317 (56%), Gaps = 7/317 (2%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G + +I   +AF +F  M++ +P  P +  F  L    A  + Y+TV+   +++   G+ 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
            DLY++ ILI+CFC+  R+S    VLG++++  + P  V F SL+ G C  +RI +A +L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              +   G +PNV+ Y+TLI+GLC+ G   +AL L  EM     K G+    + VTY T+
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEME----KKGL--GADVVTYNTL 217

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GLC  G    A  +   M  ++INPDVVT+ +LI  F    + +EA  L  EM+   V
Sbjct: 218 LTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSV 277

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+ VT+N I++ LC +G++ +A +  +LM  +G  PN  T++TL+ GFC    V+   +
Sbjct: 278 DPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMK 337

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G    +F+Y
Sbjct: 338 LFQRMSCEGFNADIFTY 354



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 179/333 (53%), Gaps = 11/333 (3%)

Query: 64  ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY 123
           AS     +ER ++    ++  I  ++AF +F  ML  RP  P +  F  +   +AK   +
Sbjct: 566 ASHHHHYRERLRN----ELHCIKFDDAFSLFCEMLQSRP-IPSIVDFTRVLTVIAKMNKF 620

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D V+ L+ ++ + G+  DLY++ ILI+CFC+  R+S    +LG++++  F P  V   SL
Sbjct: 621 DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 680

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           + G C  +R  EA +L   +  FG  PNV+ Y+T+INGLC+      AL +F  M     
Sbjct: 681 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCME---- 736

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           K G+  + + VTY T+I GL   G    A  L   M  + I+P+V+ + +LI  F    +
Sbjct: 737 KKGI--RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 794

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  L  EM+ + V P+V T+N +++  C +G + +A  + +LM+ +G  P+  T++T
Sbjct: 795 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 854

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ GFC + RV    +LF  M   G     F+Y
Sbjct: 855 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTY 887



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K +  +  L +F  +   G+  D  TYN LI+     GR +    +
Sbjct: 707 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARL 766

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++    P+ + FT+LI     E  ++EA  L+ ++      PNV TY++LING C 
Sbjct: 767 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 826

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F+ M +        C P+ VTY T+I G CK   V+   +LF +M  + +
Sbjct: 827 HGCLGDAKYMFDLMVSKG------CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGL 880

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D  TYN+LIHG+C A   N A  +   M+D GV PD+VT+N+++D LC NGK+++A  
Sbjct: 881 VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALV 940

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++E +    ++ +  T++ ++ G C T ++  A  LF S+   G K    +Y
Sbjct: 941 MVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 992



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L K    +  L L   +   GL  D+ TYN L+   C  GR S    +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++    PD V FT+LI     +  + EA  L+ ++      PN +TY+++INGLC 
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A   F+ MA+        C PN VTY T+I G CK   VD+  +LF +M  +  
Sbjct: 294 HGRLYDAKKTFDLMASKG------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N D+ TYN+LIHG+C       A  +   M+ + V PD++T  +++  LC NG+++ A  
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALV 407

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + M           ++ ++ G C   +V  A ELF  +   G K    +Y
Sbjct: 408 KFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTY 459



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 12/285 (4%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L  +  +     + + +    + PD+ T+  LI+ F K G +     +  
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++S   P+ V + S+I GLC   R+ +A   F  + + GC PNV+TY+TLI+G C+  
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330

Query: 227 HTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                + LF+ M+         C+    +  TY T+I G C+ G +  A ++F  M  + 
Sbjct: 331 MVDEGMKLFQRMS---------CEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD++T+  L+HG C   +   A     +M +      +V +N+++  LCK  K+++A 
Sbjct: 382 VTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAW 441

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L   + + GV P+  T++ ++ G C  G    A EL   M+  G
Sbjct: 442 ELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            N A  +F Y +  +       ++N L   L+ +  +     L + +    + P++  +  
Sbjct: 726  NNALEVF-YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 784

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            LI+ F K G +     +   ++R    P+   + SLI G C    + +A  +F  + + G
Sbjct: 785  LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 844

Query: 208  CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            C P+V+TY+TLI G C++      + LF EM    G  G     +  TY T+I G C+ G
Sbjct: 845  CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY-QGLVG-----DAFTYNTLIHGYCQAG 898

Query: 268  FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++ A+++F +M D  ++PD+VTYN L+   C      +A  ++ ++    +  D++T+N
Sbjct: 899  KLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN 958

Query: 328  VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +I+  LC+  K+ EA  L   +  +GV P+   + T++ G C  G    A +L   M+  
Sbjct: 959  IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 1018

Query: 388  G 388
            G
Sbjct: 1019 G 1019



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 101  RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGR 157
            R   P +  F  L     K  +     +L+K +    + P+++TYN LIN FC    +G 
Sbjct: 773  RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 832

Query: 158  VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
              + F ++  + + CF PD V + +LI G C   R+ +   LF ++   G   +  TY+T
Sbjct: 833  AKYMFDLM--VSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 889

Query: 218  LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            LI+G C+ G   VA  +F  M +     GV   P+ VTY  ++D LC  G ++KA  +  
Sbjct: 890  LIHGYCQAGKLNVAQKVFNRMVDC----GV--SPDIVTYNILLDCLCNNGKIEKALVMVE 943

Query: 278  QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
             ++   ++ D++TYN +I G C  +   EA CL   +  +GV+PD + +  ++  LC+ G
Sbjct: 944  DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 1003

Query: 338  KMDEASRLLELMILRGVNPNTSTF-STLMDGF 368
               EA +L   M   G  P+   +  TL D +
Sbjct: 1004 LQREADKLCRRMKEDGFMPSERIYDETLRDHY 1035



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F  L     K  + D    L+K +  + + P+  TYN +IN  C  GR+  
Sbjct: 240 RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299

Query: 161 G---FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
               F ++    + CF P+ V + +LI G C    + E   LF ++   G   ++ TY+T
Sbjct: 300 AKKTFDLMAS--KGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G   VAL++F  M +          P+ +T+  ++ GLC  G ++ A   F 
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRR------VTPDIITHCILLHGLCVNGEIESALVKFD 410

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M++      +V YN +IHG C A+   +A  L   +  +GV+PD  T+ +++  LCKNG
Sbjct: 411 DMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNG 470

Query: 338 KMDEASRLLELMILRGV 354
              EA  L+  M   G+
Sbjct: 471 PRREADELIRRMKEEGI 487


>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
 gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g64583, mitochondrial; Flags: Precursor
 gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
          Length = 512

 Score =  202 bits (513), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 112/317 (35%), Positives = 178/317 (56%), Gaps = 7/317 (2%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G + +I   +AF +F  M++ +P  P +  F  L    A  + Y+TV+   +++   G+ 
Sbjct: 45  GFLHSIRFEDAFALFFEMVHSQP-LPSIVDFTRLLTATANLRRYETVIYFSQKMELYGIS 103

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
            DLY++ ILI+CFC+  R+S    VLG++++  + P  V F SL+ G C  +RI +A +L
Sbjct: 104 HDLYSFTILIHCFCRCSRLSFALSVLGKMMKLGYEPSIVTFGSLLHGFCLVNRIGDAFSL 163

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              +   G +PNV+ Y+TLI+GLC+ G   +AL L  EM     K G+    + VTY T+
Sbjct: 164 VILMVKSGYEPNVVVYNTLIDGLCKNGELNIALELLNEME----KKGL--GADVVTYNTL 217

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GLC  G    A  +   M  ++INPDVVT+ +LI  F    + +EA  L  EM+   V
Sbjct: 218 LTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSV 277

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+ VT+N I++ LC +G++ +A +  +LM  +G  PN  T++TL+ GFC    V+   +
Sbjct: 278 DPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFRMVDEGMK 337

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G    +F+Y
Sbjct: 338 LFQRMSCEGFNADIFTY 354



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L K    +  L L   +   GL  D+ TYN L+   C  GR S    +
Sbjct: 174 PNVVVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARM 233

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++    PD V FT+LI     +  + EA  L+ ++      PN +TY+++INGLC 
Sbjct: 234 LRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCM 293

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A   F+ MA+        C PN VTY T+I G CK   VD+  +LF +M  +  
Sbjct: 294 HGRLYDAKKTFDLMASKG------CFPNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGF 347

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N D+ TYN+LIHG+C       A  +   M+ + V PD++T  +++  LC NG+++ A  
Sbjct: 348 NADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRRVTPDIITHCILLHGLCVNGEIESALV 407

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + M           ++ ++ G C   +V  A ELF  +   G K    +Y
Sbjct: 408 KFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTY 459



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 140/285 (49%), Gaps = 12/285 (4%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L  +  +     + + +    + PD+ T+  LI+ F K G +     +  
Sbjct: 211 VVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVFVKQGNLDEAQELYK 270

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++S   P+ V + S+I GLC   R+ +A   F  + + GC PNV+TY+TLI+G C+  
Sbjct: 271 EMIQSSVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPNVVTYNTLISGFCKFR 330

Query: 227 HTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                + LF+ M+         C+    +  TY T+I G C+ G +  A ++F  M  + 
Sbjct: 331 MVDEGMKLFQRMS---------CEGFNADIFTYNTLIHGYCQVGKLRVALDIFCWMVSRR 381

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD++T+  L+HG C   +   A     +M +      +V +N+++  LCK  K+++A 
Sbjct: 382 VTPDIITHCILLHGLCVNGEIESALVKFDDMRESEKYIGIVAYNIMIHGLCKADKVEKAW 441

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L   + + GV P+  T++ ++ G C  G    A EL   M+  G
Sbjct: 442 ELFCRLPVEGVKPDARTYTIMILGLCKNGPRREADELIRRMKEEG 486



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F  L     K  + D    L+K +  + + P+  TYN +IN  C  GR+  
Sbjct: 240 RSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHGRLYD 299

Query: 161 G---FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
               F ++    + CF P+ V + +LI G C    + E   LF ++   G   ++ TY+T
Sbjct: 300 AKKTFDLMAS--KGCF-PNVVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNT 356

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G   VAL++F  M +          P+ +T+  ++ GLC  G ++ A   F 
Sbjct: 357 LIHGYCQVGKLRVALDIFCWMVSRR------VTPDIITHCILLHGLCVNGEIESALVKFD 410

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M++      +V YN +IHG C A+   +A  L   +  +GV+PD  T+ +++  LCKNG
Sbjct: 411 DMRESEKYIGIVAYNIMIHGLCKADKVEKAWELFCRLPVEGVKPDARTYTIMILGLCKNG 470

Query: 338 KMDEASRLLELMILRGV 354
              EA  L+  M   G+
Sbjct: 471 PRREADELIRRMKEEGI 487


>gi|357463605|ref|XP_003602084.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491132|gb|AES72335.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 579

 Score =  201 bits (512), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 180/326 (55%), Gaps = 27/326 (8%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ML + P+PP L  FN +   L K  HY T +SLF++L   G+ P + T  IL+NC+C  G
Sbjct: 1   MLQISPTPPIL-QFNHILASLVKINHYPTAISLFRQLEFNGIKPSIVTLTILMNCYCHTG 59

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            ++  F +L +IL+  + P+++ FT+LIKG+C   +  EA      + A G K + ++Y+
Sbjct: 60  GITFLFSILTKILKMGYEPNSITFTTLIKGMCLNGQAYEALLFHDHVVAHGFKLDQVSYA 119

Query: 217 TLINGLCRTGHTIVALNLFEE-MANGN-------------GKF---------GVVCK--- 250
            L+NGLC+ G T  A+ +  +   N +             GKF          ++ K   
Sbjct: 120 ILMNGLCKMGETRAAMQMLRKTWVNADVVMYSTIIDSLCKGKFVTDAYRLYSEMIAKGIF 179

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           PN  T++ ++D LCK+    +A  L   M  K + P+VVTY +++ G+C  N  N+A  +
Sbjct: 180 PNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNI 239

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
              M+ +GV+P+V  +N+I++ LCK  ++DEA  L + M  + +NP+  T++ L+DG C 
Sbjct: 240 FNVMVQEGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNILIDGLCK 299

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            G+++ + EL   M S+G    + +Y
Sbjct: 300 LGKISTSLELVDEMRSIGKTVDIITY 325



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 86/287 (29%), Positives = 156/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ +   L K K       L+  + + G+FP++YT++IL++  CK  +      +L  ++
Sbjct: 150 YSTIIDSLCKGKFVTDAYRLYSEMIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMM 209

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           +    P+ V + +++ G C  +++ +A  +F  +   G +PNV  Y+ +INGLC+     
Sbjct: 210 KKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKKRVD 269

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A+NLF+EM            P+ VTY  +IDGLCK G +  + EL  +M+      D++
Sbjct: 270 EAMNLFKEMHWKK------INPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDII 323

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSL+H  C  +  ++A  L+ E+ DQG+QP+V T+  ++D LCK+G++++A  + + +
Sbjct: 324 TYNSLLHALCKNHHLDQAITLVKEIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEI 383

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  G +    T++ +++G C  G  + A  L   ME   C     SY
Sbjct: 384 LTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSY 430



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 152/289 (52%), Gaps = 9/289 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+ +L   L K       + + ++   T +  D+  Y+ +I+  CK   V+  + +   
Sbjct: 116 VSYAILMNGLCKMGETRAAMQMLRK---TWVNADVVMYSTIIDSLCKGKFVTDAYRLYSE 172

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P+   F+ L+  LC + +  +A  L   +   G KPNV+TY  +++G C    
Sbjct: 173 MIAKGIFPNVYTFSILVDALCKDRKGKQAMNLLAMMMKKGVKPNVVTYGAIMDGYCLVNQ 232

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              ALN+F  M     + GV  +PN   Y  II+GLCK+  VD+A  LF +M  K INPD
Sbjct: 233 VNKALNIFNVMV----QEGV--EPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPD 286

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTYN LI G C     + +  L+ EM   G   D++T+N ++  LCKN  +D+A  L++
Sbjct: 287 VVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVK 346

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  +G+ PN  T++TL+DG C  GR+  A  +F  + + G   TV++Y
Sbjct: 347 EIKDQGIQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITVWTY 395



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 143/278 (51%), Gaps = 12/278 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++  +          +  L++F  +   G+ P+++ YNI+IN  CK  
Sbjct: 207 MMMKKGVKPNVVTYGAIMDGYCLVNQVNKALNIFNVMVQEGVEPNVWCYNIIINGLCKKK 266

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           RV     +   +      PD V +  LI GLC   +I  +  L  ++++ G   ++ITY+
Sbjct: 267 RVDEAMNLFKEMHWKKINPDVVTYNILIDGLCKLGKISTSLELVDEMRSIGKTVDIITYN 326

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +L++ LC+  H   A+ L +E+ +         +PN  TYTT+IDGLCK+G ++ A  +F
Sbjct: 327 SLLHALCKNHHLDQAITLVKEIKDQG------IQPNVCTYTTLIDGLCKDGRLEDAYVIF 380

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            ++  +  +  V TYN +I+G C    ++EA  LL  M D    PD V++  I+  L + 
Sbjct: 381 QEILTEGYHITVWTYNVMINGLCKKGLFDEALALLSRMEDNACIPDAVSYETIIYALSEK 440

Query: 337 GKMDEASRLLELMILRGVNP------NTSTFSTLMDGF 368
           G+  + ++LL  MI+RG++       N +T + L D +
Sbjct: 441 GETVKTNKLLCAMIVRGLSKRLKKKVNMTTIADLNDKW 478



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 7/232 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF+ M+      P +  +N++   L K K  D  ++LFK ++   + PD+ TYNI
Sbjct: 234 NKALNIFNVMVQ-EGVEPNVWCYNIIINGLCKKKRVDEAMNLFKEMHWKKINPDVVTYNI 292

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK+G++S    ++  +     T D + + SL+  LC    + +A  L  ++K  G
Sbjct: 293 LIDGLCKLGKISTSLELVDEMRSIGKTVDIITYNSLLHALCKNHHLDQAITLVKEIKDQG 352

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PNV TY+TLI+GLC+ G    A  +F+E+        V       TY  +I+GLCK+G
Sbjct: 353 IQPNVCTYTTLIDGLCKDGRLEDAYVIFQEILTEGYHITV------WTYNVMINGLCKKG 406

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
             D+A  L  +M+D    PD V+Y ++I+      +  + N LL  M+ +G+
Sbjct: 407 LFDEALALLSRMEDNACIPDAVSYETIIYALSEKGETVKTNKLLCAMIVRGL 458


>gi|224100421|ref|XP_002311869.1| predicted protein [Populus trichocarpa]
 gi|222851689|gb|EEE89236.1| predicted protein [Populus trichocarpa]
          Length = 470

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 102/291 (35%), Positives = 162/291 (55%), Gaps = 6/291 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + M+   P L ++N +   L K+   D    + + + + G+ PD   Y  LI+ FCK+G 
Sbjct: 36  MQMKGLKPNLYTYNSIILLLCKSGKVDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGN 95

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +   + +   + +    PD +A+T++I GLC   ++MEA  +F K+ + G +P+ +TY+T
Sbjct: 96  IQAAYKLFDEMEKQRIVPDFIAYTAVICGLCRCGKMMEADKVFNKMFSRGVEPDEVTYTT 155

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C++G    A +L  +M            PN VTYT + DGLCK G VD A EL  
Sbjct: 156 LIDGYCKSGEMEKAFSLHNQMVQSG------LTPNVVTYTALADGLCKLGQVDTANELLH 209

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  K +  ++ TYNSL++G C + +  +A  L+ EM   G+ PD +TF  +MD  CK G
Sbjct: 210 EMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTG 269

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +M +A  LL  M+ RG+ P   TF+ LM+GFC++G +   + L   M   G
Sbjct: 270 EMVKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKG 320



 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 108/299 (36%), Positives = 162/299 (54%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + S++ +            VL L + +   GL P+LYTYN +I   CK G+
Sbjct: 1   MKFRGDAPDVVSYSTVINGYCLGGELQKVLKLIQEMQMKGLKPNLYTYNSIILLLCKSGK 60

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     VL  ++     PD V +T+LI G C    I  A  LF +++     P+ I Y+ 
Sbjct: 61  VDDAERVLREMINQGIVPDTVVYTTLIDGFCKLGNIQAAYKLFDEMEKQRIVPDFIAYTA 120

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I GLCR G  + A  +F +M      F    +P+ VTYTT+IDG CK G ++KA  L  
Sbjct: 121 VICGLCRCGKMMEADKVFNKM------FSRGVEPDEVTYTTLIDGYCKSGEMEKAFSLHN 174

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM    + P+VVTY +L  G C     + AN LL EM  +G+Q ++ T+N +++ LCK+G
Sbjct: 175 QMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSG 234

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + +A +L+E M + G+ P+T TF+TLMD +C TG +  A EL   M   G + TV ++
Sbjct: 235 NIRQAVKLMEEMEVAGMYPDTITFTTLMDAYCKTGEMVKAHELLREMLDRGLQPTVITF 293



 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/307 (31%), Positives = 165/307 (53%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ +FD M   R  P  +    ++ G L +         +F ++ S G+ PD  TY  LI
Sbjct: 99  AYKLFDEMEKQRIVPDFIAYTAVICG-LCRCGKMMEADKVFNKMFSRGVEPDEVTYTTLI 157

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G +   F +  ++++S  TP+ V +T+L  GLC   ++  A  L  ++   G +
Sbjct: 158 DGYCKSGEMEKAFSLHNQMVQSGLTPNVVTYTALADGLCKLGQVDTANELLHEMCGKGLQ 217

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            N+ TY++L+NGLC++G+   A+ L EEM    G +     P+T+T+TT++D  CK G +
Sbjct: 218 LNICTYNSLVNGLCKSGNIRQAVKLMEEMEVA-GMY-----PDTITFTTLMDAYCKTGEM 271

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA EL  +M D+ + P V+T+N L++GFC +    +   LL  M+++G+ P+  T+N +
Sbjct: 272 VKAHELLREMLDRGLQPTVITFNVLMNGFCMSGMLEDGERLLAWMLEKGIMPNTTTYNSL 331

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           M + C    M   + + + M  RGV P+++T++ L+ G C    +  A  L   M   G 
Sbjct: 332 MKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMAEKGF 391

Query: 390 KHTVFSY 396
             T  SY
Sbjct: 392 NLTASSY 398



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 83/327 (25%), Positives = 139/327 (42%), Gaps = 42/327 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ M +    P  +T   L+ G   K+   +   SL  ++  +GL P++ TY  L
Sbjct: 133 EADKVFNKMFSRGVEPDEVTYTTLIDG-YCKSGEMEKAFSLHNQMVQSGLTPNVVTYTAL 191

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            +  CK+G+V     +L  +       +   + SL+ GLC    I +A  L  +++  G 
Sbjct: 192 ADGLCKLGQVDTANELLHEMCGKGLQLNICTYNSLVNGLCKSGNIRQAVKLMEEMEVAGM 251

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ IT++TL++  C+TG  + A  L  EM +         +P  +T+  +++G C  G 
Sbjct: 252 YPDTITFTTLMDAYCKTGEMVKAHELLREMLDRG------LQPTVITFNVLMNGFCMSGM 305

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSL---------------------------------- 294
           ++  + L   M +K I P+  TYNSL                                  
Sbjct: 306 LEDGERLLAWMLEKGIMPNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNI 365

Query: 295 -IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
            I G C A +  EA  L  EM ++G      ++N I+    K  K+ EA  L E M   G
Sbjct: 366 LIKGHCKARNMKEAWFLHKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREG 425

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           +  +   ++  +D     G +  A EL
Sbjct: 426 MAADAEIYNLFVDISYGEGNMETALEL 452



 Score = 41.6 bits (96), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 34/133 (25%), Positives = 60/133 (45%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++N L        +      ++K + + G+ PD  TYNILI   CK   +   + +
Sbjct: 323 PNTTTYNSLMKQYCIRNNMRCTTEIYKGMCARGVMPDSNTYNILIKGHCKARNMKEAWFL 382

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +    F   A ++ S+IKG   + +I EA  LF +++  G   +   Y+  ++    
Sbjct: 383 HKEMAEKGFNLTASSYNSIIKGFFKKKKISEARELFEEMRREGMAADAEIYNLFVDISYG 442

Query: 225 TGHTIVALNLFEE 237
            G+   AL L +E
Sbjct: 443 EGNMETALELCDE 455


>gi|297848938|ref|XP_002892350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338192|gb|EFH68609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 493

 Score =  201 bits (510), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 197/355 (55%), Gaps = 34/355 (9%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     + +I  N+A  +F  M   RP  P +  F+ L   +AK K Y+ V+SLF
Sbjct: 42  RERLRSG----LHSIKFNDALTLFCDMAESRP-LPSIVDFSRLLVAIAKLKKYEAVISLF 96

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           + +   G+  DLY+++ LI+CFC+  R+S     LG++++  F P  V F SL+ G C  
Sbjct: 97  RHIEILGISHDLYSFSTLIDCFCRCSRLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHV 156

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------- 240
           +RI EA +L  ++   G +PNV+ Y+T+I+ LC       AL++   M            
Sbjct: 157 NRIQEAMSLVDQIVGLGYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITY 216

Query: 241 --------GNGKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
                    +GK+GV  +           P+ +T++ +ID   KEG + +AK+ + +M  
Sbjct: 217 NSLITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQ 276

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           ++++P++VTYNSLI+G C     +EA  +L  M+ +G  P+ VT+N +++  CK+ ++D+
Sbjct: 277 RSVDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVSKGFFPNAVTYNTLVNGYCKSKRVDD 336

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A ++L +M   GV+ +T T++TL  G+C  G+ N A+++   M S G    ++++
Sbjct: 337 AMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTF 391



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 91/333 (27%), Positives = 154/333 (46%), Gaps = 42/333 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D ++ +    P +  +N +   L + +  DT L +   +   G+ PD+ TYN 
Sbjct: 160 QEAMSLVDQIVGL-GYEPNVVIYNTIIDSLCENRQVDTALDVLNHMEKMGIRPDVITYNS 218

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI      G+      +L  ++R    PD + F+++I     E +++EA   + ++    
Sbjct: 219 LITRLFHSGKWGVSARILSDMMRMGIHPDVITFSAMIDVFGKEGQLLEAKKQYDEMIQRS 278

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++TY++LINGLC  G    A  +   M +  G F     PN VTY T+++G CK  
Sbjct: 279 VDPNIVTYNSLINGLCIHGLLDEAKKVLNFMVS-KGFF-----PNAVTYNTLVNGYCKSK 332

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV---- 323
            VD A ++   M    ++ D  TYN+L  G+C A  +N A  +L  M+  GV PD+    
Sbjct: 333 RVDDAMKILCVMSHDGVDGDTFTYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFN 392

Query: 324 -------------------------------VTFNVIMDELCKNGKMDEASRLLELMILR 352
                                          +T+N+I+  +CK  K+++A  L   + L+
Sbjct: 393 MLLDGLCEHGKIEKALVKLEDLQKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALK 452

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           GV+P+  T++T+M G         A EL+  M+
Sbjct: 453 GVSPDVITYTTMMIGLRRKRLWLEAHELYRKMK 485



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 73/135 (54%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L+    +   ++    +  R+ S G+ PD+YT+N+L++  C+ G++    V L  +
Sbjct: 355 TYNTLYQGYCQAGQFNAAEKVLARMVSCGVLPDIYTFNMLLDGLCEHGKIEKALVKLEDL 414

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +S      + +  +IKG+C  +++ +A  LF  L   G  P+VITY+T++ GL R    
Sbjct: 415 QKSETVVGIITYNIIIKGMCKANKVEDAWYLFCSLALKGVSPDVITYTTMMIGLRRKRLW 474

Query: 229 IVALNLFEEMANGNG 243
           + A  L+ +M   +G
Sbjct: 475 LEAHELYRKMKKDDG 489


>gi|115482788|ref|NP_001064987.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|22165069|gb|AAM93686.1| putative leaf protein [Oryza sativa Japonica Group]
 gi|31432904|gb|AAP54480.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|113639596|dbj|BAF26901.1| Os10g0501700 [Oryza sativa Japonica Group]
 gi|125575306|gb|EAZ16590.1| hypothetical protein OsJ_32064 [Oryza sativa Japonica Group]
          Length = 454

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 182/347 (52%), Gaps = 39/347 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++A+  +  ML+ R SP  +T +N +   L+K +  D  + +   +    +
Sbjct: 24  EGDV-----DKAYITYHEMLDRRVSPDAVT-YNSIIAALSKAQAMDRAMEVLTVM----V 73

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN +++ +C  G+      +  ++      PD V + SL+  LC   +  EA  
Sbjct: 74  MPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYNSLMDYLCKNGKCTEARK 133

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGV-VCK-- 250
           +F  +   G KP++ TY TL++G    G     H ++AL +   M   +  F + +C   
Sbjct: 134 IFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNILICAYT 193

Query: 251 ---------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
                                PN V Y T+IDGLCK G +D A   F QM DK + P+VV
Sbjct: 194 KQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGLTPNVV 253

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            Y SLIH  C  + W +A  L+ E++DQG+ P++V FN I+D LCK G++ E+ +L +L+
Sbjct: 254 VYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVIESKKLFDLL 313

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GVNP+  T+STL+DG+CL G+++ A +L   M S+G K    +Y
Sbjct: 314 GHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTY 360



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M+  R   P +T++  L    A       +  L   +   G+  D + +NIL
Sbjct: 130 EARKIFDSMVK-RGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGMQLDHHVFNIL 188

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K  +V    +V  ++ +   TP+AV + ++I GLC   R+ +A   F ++   G 
Sbjct: 189 ICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMIDKGL 248

Query: 209 KPNVITYSTLINGLCRTGHTIVALNL-FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            PNV+ Y++LI+ LC       A  L FE +  G         PN V + TI+D LCKEG
Sbjct: 249 TPNVVVYTSLIHALCTYDKWEKAEELIFEILDQG-------INPNIVFFNTILDSLCKEG 301

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V ++K+LF  +    +NPDV+TY++LI G+C A   + A  LL  M+  G++PD VT++
Sbjct: 302 RVIESKKLFDLLGHIGVNPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSVTYS 361

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CK  +M++A  L + M   GVNP+  T++ ++ G   T R   AKEL+  +   
Sbjct: 362 TLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITES 421

Query: 388 GCKHTVFSY 396
           G +  + +Y
Sbjct: 422 GTQLELSTY 430



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/262 (31%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+L     K +  D V+ +F ++   GL P+   Y  +I+  CK+GR+    +   +++
Sbjct: 185 FNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAMLNFEQMI 244

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
               TP+ V +TSLI  LC   +  +A  L  ++   G  PN++ ++T+++ LC+ G  I
Sbjct: 245 DKGLTPNVVVYTSLIHALCTYDKWEKAEELIFEILDQGINPNIVFFNTILDSLCKEGRVI 304

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            +  LF+ +    G  GV   P+ +TY+T+IDG C  G +D A +L   M    + PD V
Sbjct: 305 ESKKLFDLL----GHIGV--NPDVITYSTLIDGYCLAGKMDGAMKLLTGMVSVGLKPDSV 358

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY++LI+G+C  N   +A  L  EM   GV PD++T+N+I+  L +  +   A  L   +
Sbjct: 359 TYSTLINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARI 418

Query: 350 ILRGVNPNTSTFSTLMDGFCLT 371
              G     ST++ ++  F  T
Sbjct: 419 TESGTQLELSTYNIILMDFAKT 440



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ +YN +I+   K G V   ++    +L    +PDAV + S+I  L     +  A  +
Sbjct: 9   PDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRRVSPDAVTYNSIIAALSKAQAMDRAMEV 68

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            T +      PN  TY+++++G C +G +  A+ +F +M +         +P+ VTY ++
Sbjct: 69  LTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDG------IEPDVVTYNSL 118

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +D LCK G   +A+++F  M  + + PD+ TY +L+HG+       E + LL  M+  G+
Sbjct: 119 MDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQNGM 178

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           Q D   FN+++    K  K+DE   +   M  +G+ PN   + T++DG C  GR++ A  
Sbjct: 179 QLDHHVFNILICAYTKQEKVDEVVLVFSKMRQQGLTPNAVNYRTVIDGLCKLGRLDDAML 238

Query: 380 LFVSMESMGCKHTVFSY 396
            F  M   G    V  Y
Sbjct: 239 NFEQMIDKGLTPNVVVY 255



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 106/190 (55%), Gaps = 12/190 (6%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V++Y+T+I+GL + G    A   + EM +          P+ VTY +II  L K  
Sbjct: 7   CPPDVVSYNTIIDGLFKEGDVDKAYITYHEMLDRR------VSPDAVTYNSIIAALSKAQ 60

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+   M    + P+  TYNS++HG+C +    +A  +  +M   G++PDVVT+N
Sbjct: 61  AMDRAMEVLTVM----VMPNCFTYNSIMHGYCSSGQSEKAIGIFRKMCSDGIEPDVVTYN 116

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM--E 385
            +MD LCKNGK  EA ++ + M+ RG+ P+ +T+ TL+ G+   G +    +L   M   
Sbjct: 117 SLMDYLCKNGKCTEARKIFDSMVKRGLKPDITTYGTLLHGYASKGALVEMHDLLALMVQN 176

Query: 386 SMGCKHTVFS 395
            M   H VF+
Sbjct: 177 GMQLDHHVFN 186



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 69/149 (46%), Gaps = 3/149 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD + ++  +P  +T   L+ G CLA     D  + L   + S GL PD  TY+ 
Sbjct: 305 ESKKLFDLLGHIGVNPDVITYSTLIDGYCLAG--KMDGAMKLLTGMVSVGLKPDSVTYST 362

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+     +   +  +   PD + +  ++ GL    R   A  L+ ++   G
Sbjct: 363 LINGYCKINRMEDALALFKEMESNGVNPDIITYNIILHGLFRTRRTAAAKELYARITESG 422

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFE 236
            +  + TY+ ++    +T   ++    F 
Sbjct: 423 TQLELSTYNIILMDFAKTNSLMMHFGCFR 451


>gi|60390261|sp|Q76C99.1|RF1_ORYSI RecName: Full=Protein Rf1, mitochondrial; AltName: Full=Fertility
           restorer; AltName: Full=Protein PPR; AltName:
           Full=Restorer for CMS; Flags: Precursor
 gi|33859440|dbj|BAC77665.2| PPR protein [Oryza sativa Indica Group]
 gi|33859442|dbj|BAC77666.2| Rf1 [Oryza sativa Indica Group]
 gi|41152689|dbj|BAD08214.1| fertility restorer [Oryza sativa Indica Group]
 gi|46091159|dbj|BAD13708.1| PPR protein [Oryza sativa Indica Group]
 gi|47550657|dbj|BAD20283.1| restorer for CMS [Oryza sativa Indica Group]
          Length = 791

 Score =  200 bits (509), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 169/312 (54%), Gaps = 9/312 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + PDL TY
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++ 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L   MA+  G       P+ V+YTT+I+G  
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFF 207

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG  DKA   + +M D+ I PDVVTYNS+I   C A   ++A  +L  M+  GV PD +
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 267

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+S LMD  C  GR   A+++F SM
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 328 TKRGLKPEITTY 339



 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 169/338 (50%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML+ R   P + ++N +   L K +  D  + +   +   G+ PD  TYN 
Sbjct: 213 DKAYSTYHEMLD-RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C  G+       L ++      PD V ++ L+  LC   R MEA  +F  +   G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NG--------------NGKFGVVCK-- 250
            KP + TY TL+ G    G  +    L + M  NG                K G V +  
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAM 391

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN VTY  +I  LCK G V+ A   F QM D+ ++P  + YNSLIHG 
Sbjct: 392 LVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 451

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  N W  A  L++EM+D+G+  + + FN I+D  CK G++ E+ +L ELM+  GV PN 
Sbjct: 452 CTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV 511

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++TL++G+CL G+++ A +L   M S+G K    +Y
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 163/353 (46%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+     P     F++L    AK    D  + +F ++   GL
Sbjct: 344 QGYATKGALVEMHGLLDLMVRNGIHPDHYV-FSILICAYAKQGKVDQAMLVFSKMRQQGL 402

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--------- 189
            P+  TY  +I   CK GRV    +   +++    +P  + + SLI GLC          
Sbjct: 403 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 462

Query: 190 --------------------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R++E+  LF  +   G KPNVITY+TLING C
Sbjct: 463 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYC 522

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A+ L       +G   V  KPNTVTY+T+I+G CK   ++ A  LF +M+   
Sbjct: 523 LAGKMDEAMKLL------SGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSG 576

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD++TYN ++ G         A  L + + + G Q ++ T+N+I+  LCKN   D+A 
Sbjct: 577 VSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDDAL 636

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ + + L  +     TF+ ++D     GR + AK+LFV+  S G     ++Y
Sbjct: 637 QMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +F+ M+ +   P  +T   L+ G CLA     D  + L   + S GL P+  TY+ 
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAG--KMDEAMKLLSGMVSVGLKPNTVTYST 551

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+ ++   G
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + K          T+  +ID L K G
Sbjct: 612 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKL------EARTFNIMIDALLKVG 665

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF+      + P+  TY  +           E + L + M D G   D    N
Sbjct: 666 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 725

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ EL + G++  A   L ++  +  +   ST S  +D
Sbjct: 726 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF+ +   G+ P++ TYN LIN +C  G++     +L  ++     P+ V +++LI G C
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  +     +    
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI--- 614

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  I+ GLCK    D A ++F  +   ++  +  T+N +I         +EA 
Sbjct: 615 ---ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L +     G+ P+  T+ ++ + +   G ++E  +L   M   G   ++   + ++   
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 731

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 732 LQRGEITRA 740


>gi|83744088|gb|ABC42330.1| PPR protein [Oryza sativa Indica Group]
          Length = 791

 Score =  200 bits (509), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 118/312 (37%), Positives = 169/312 (54%), Gaps = 9/312 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + PDL TY
Sbjct: 33  DARHVFDELLR-RGRGASIYGLNRALADVARDSPAAAV-SRYNRMARAGADEVTPDLCTY 90

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++ 
Sbjct: 91  GILIGCCCRAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 150

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L   MA+  G       P+ V+YTT+I+G  
Sbjct: 151 ELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFF 207

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG  DKA   + +M D+ I PDVVTYNS+I   C A   ++A  +L  M+  GV PD +
Sbjct: 208 KEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 267

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+S LMD  C  GR   A+++F SM
Sbjct: 268 TYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSM 327

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 328 TKRGLKPEITTY 339



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 167/338 (49%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML+ R   P + ++N +   L K +  D  + +   +   G+ PD  TYN 
Sbjct: 213 DKAYSTYHEMLD-RGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C  G+       L ++      PD V ++ L+  LC   R MEA  +F  +   G
Sbjct: 272 ILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRG 331

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NG-----------------NGKFGVV- 248
            KP + TY TL+ G    G  +    L + M  NG                  GK     
Sbjct: 332 LKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYANQGKVDQAM 391

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN VTY  +I  LCK G V+ A   F QM D+ ++P  + YNSLIHG 
Sbjct: 392 LVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGL 451

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  N W  A  L++EM+D+G+  + + FN I+D  CK G++ E+ +L ELM+  GV PN 
Sbjct: 452 CTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVRIGVKPNV 511

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++TL++G+CL G+++ A +L   M S+G K    +Y
Sbjct: 512 ITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTY 549



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 163/323 (50%), Gaps = 12/323 (3%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C  + QG +     ++A  +F  M     +P  +T +  + G L K+   +  +  F+++
Sbjct: 379 CAYANQGKV-----DQAMLVFSKMRQQGLNPNAVT-YGAVIGILCKSGRVEDAMLYFEQM 432

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
              GL P    YN LI+  C   +      ++  +L      + + F S+I   C E R+
Sbjct: 433 IDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRV 492

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           +E+  LF  +   G KPNVITY+TLING C  G    A+ L       +G   V  KPNT
Sbjct: 493 IESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLL------SGMVSVGLKPNT 546

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY+T+I+G CK   ++ A  LF +M+   ++PD++TYN ++ G         A  L + 
Sbjct: 547 VTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVR 606

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           + + G Q ++ T+N+I+  LCKN   D+A ++ + + L  +     TF+ ++D     GR
Sbjct: 607 ITESGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGR 666

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LFV+  S G     ++Y
Sbjct: 667 NDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 130/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +F+ M+ +   P  +T   L+ G CLA     D  + L   + S GL P+  TY+ 
Sbjct: 494 ESEKLFELMVRIGVKPNVITYNTLINGYCLAG--KMDEAMKLLSGMVSVGLKPNTVTYST 551

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+ ++   G
Sbjct: 552 LINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 611

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + K          T+  +ID L K G
Sbjct: 612 TQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKL------EARTFNIMIDALLKVG 665

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF+      + P+  TY  +           E + L + M D G   D    N
Sbjct: 666 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 725

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ EL + G++  A   L ++  +  +   ST S  +D
Sbjct: 726 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF+ +   G+ P++ TYN LIN +C  G++     +L  ++     P+ V +++LI G C
Sbjct: 498 LFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYC 557

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  +     +    
Sbjct: 558 KISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI--- 614

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  I+ GLCK    D A ++F  +   ++  +  T+N +I         +EA 
Sbjct: 615 ---ELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 671

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L +     G+ P+  T+ ++ + +   G ++E  +L   M   G   ++   + ++   
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 731

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 732 LQRGEITRA 740


>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
 gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
          Length = 457

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/297 (34%), Positives = 166/297 (55%), Gaps = 10/297 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     + K+ +   SL + + ++G+  D+ TYN L++  CK GR+     +
Sbjct: 150 PTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQL 209

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+  S   PD VA++S + GLC   +++ A  +  +++     PNV+TY+T+++GLC+
Sbjct: 210 LERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGLCK 269

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    AL + E+MA+ +G     C  N V Y+T++DGLCK G   +A+ +   M     
Sbjct: 270 SGKIDTALEMMEQMASSDG-----CGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGC 324

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+SL++G C A    EA   + EM  +G +P+ VT+  ++  LC  G++ EA R
Sbjct: 325 RPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAER 384

Query: 345 LLELMILRGVN-----PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++E M   G       P+ ST++ L+ G C  GR++ A + F  M S GC     SY
Sbjct: 385 MVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSY 441



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 155/300 (51%), Gaps = 17/300 (5%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           S P L +++ L     K    +    L K + S GL PD   Y  ++   CK  R+    
Sbjct: 78  STPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMASLCKSARLGEAL 137

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +L  ++R+   P  + F +LI G C E  +  A +L   + A G K +V+TY+TL++GL
Sbjct: 138 ELLEEMIRAGCCPTLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGL 197

Query: 223 CRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           C+ G    A  L E M A+G       C P+ V Y++ + GLCK G V  A ++  QM+D
Sbjct: 198 CKAGRLQEAEQLLERMKASG-------CAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRD 250

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-----VVTFNVIMDELCKN 336
            + +P+VVTYN+++ G C +   + A    +EMM+Q    D     VV ++ ++D LCK 
Sbjct: 251 SDHDPNVVTYNTILDGLCKSGKIDTA----LEMMEQMASSDGCGLNVVGYSTVVDGLCKL 306

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+  EA  ++E M   G  P+  T+S+L++G C  G++  A E    M   GCK    +Y
Sbjct: 307 GRTQEARSVMEAMARAGCRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTY 366



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 151/298 (50%), Gaps = 13/298 (4%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN L    +K         L + + + G+ P++ +YN L+   CK+ R      
Sbjct: 7   PPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEE 66

Query: 164 V----LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
           +    + R  RS  TPD V +++L+ G C   ++ E+  L  ++ + G +P+ + Y+ ++
Sbjct: 67  LVRDMISRGGRS--TPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVM 124

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
             LC++     AL L EEM          C P  +T+ T+I G C+E  ++ A  L   M
Sbjct: 125 ASLCKSARLGEALELLEEMIRAG------CCPTLITFNTLISGCCREKNLEMADSLLQTM 178

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
               +  DVVTYN+L+ G C A    EA  LL  M   G  PDVV ++  +  LCK+GK+
Sbjct: 179 AASGVKADVVTYNTLMDGLCKAGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKV 238

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM-GCKHTVFSY 396
             A ++LE M     +PN  T++T++DG C +G+++ A E+   M S  GC   V  Y
Sbjct: 239 LNAHQVLEQMRDSDHDPNVVTYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGY 296



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 80/244 (32%), Positives = 130/244 (53%), Gaps = 14/244 (5%)

Query: 67  EQFLKERCKSSG-QGDITAITP-NEAFCIFDYMLN-------MRPSP--PPLTSFNLLFG 115
           EQ L ER K+SG   D+ A +      C    +LN       MR S   P + ++N +  
Sbjct: 207 EQLL-ERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILD 265

Query: 116 CLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
            L K+   DT L + +++ S+ G   ++  Y+ +++  CK+GR      V+  + R+   
Sbjct: 266 GLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAGCR 325

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD V ++SL+ GLC   +I EA     ++   GCKPN +TY +L++GLC  G    A  +
Sbjct: 326 PDVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCGRLAEAERM 385

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            EEM++G G     C P+  TY  +I GLCK G +D A + F +M+ +  +PD V+Y+++
Sbjct: 386 VEEMSSGGGGGD-HCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYSTI 444

Query: 295 IHGF 298
           + G 
Sbjct: 445 VEGL 448



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 87/150 (58%), Gaps = 2/150 (1%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C PN+VT+  +++G  K+G     + L   M  + I P+VV+YN L+ G C    W+EA 
Sbjct: 6   CPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLERWHEAE 65

Query: 309 CLLIEMMDQGVQ--PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            L+ +M+ +G +  PD+VT++ ++   CK GK++E+  LL+ +I RG+ P+   ++ +M 
Sbjct: 66  ELVRDMISRGGRSTPDLVTYSTLLSGYCKAGKVEESRELLKEVISRGLRPDALMYTKVMA 125

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             C + R+  A EL   M   GC  T+ ++
Sbjct: 126 SLCKSARLGEALELLEEMIRAGCCPTLITF 155



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 6/149 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M      P  +T  +L+ G L K    +  +   + +   G  P+  TY  
Sbjct: 310 QEARSVMEAMARAGCRPDVVTYSSLVNG-LCKAGKIEEAVEAVREMAMEGCKPNAVTYCS 368

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFT-----PDAVAFTSLIKGLCAESRIMEAAALFTK 202
           L++  C  GR++    ++  +           P    + +LI GLC   RI +A   F +
Sbjct: 369 LVHGLCSCGRLAEAERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQR 428

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           +++ GC P+ ++YST++ GL R+G  + A
Sbjct: 429 MRSQGCDPDGVSYSTIVEGLARSGRALQA 457



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%)

Query: 315 MDQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           MD+ G  P+ VTFN +++   K G+  +  RLLE M  RG+ PN  +++ L++G C   R
Sbjct: 1   MDRTGCPPNSVTFNALVNGFSKQGRPGDCERLLETMAARGIQPNVVSYNGLLEGLCKLER 60

Query: 374 VNHAKELFVSMESMGCKHT 392
            + A+EL   M S G + T
Sbjct: 61  WHEAEELVRDMISRGGRST 79


>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
 gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
          Length = 725

 Score =  199 bits (507), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/359 (32%), Positives = 181/359 (50%), Gaps = 67/359 (18%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   L+K+   D  + L + +   G  P++++YN +++ FCK  RV +   
Sbjct: 41  PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 100

Query: 164 VLGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           +L + ++R C  PD V++T++I GLC   ++ EA  +  K+   GC+PNVITY TL++G 
Sbjct: 101 LLEQMVMRGC-PPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGF 159

Query: 223 CRTG----------------------------HTIV-------ALNLFEEMANG------ 241
           CR G                            H +        AL LF+EM         
Sbjct: 160 CRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPD 219

Query: 242 -------------NGKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFL 277
                        +GK    C+           PN VTY++++ GLCK G +D+A  L  
Sbjct: 220 VFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQ 279

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M     +P++VTYN++I G C     +EA  LL EM+D G QP+VVT+ V++D  CK G
Sbjct: 280 RMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCG 339

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K ++A  L+E+M+ +G  PN  T+++L+D FC    V  A +L  SM   GC   V SY
Sbjct: 340 KAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSY 398



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/294 (35%), Positives = 166/294 (56%), Gaps = 8/294 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGF 162
           P  +T  N++ G L   +  D+ L LFK +  +G  P D++TY+ +++   K G+V    
Sbjct: 182 PNAITYNNIMHG-LCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 240

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            ++  ++    +P+ V ++SL+ GLC   ++ EA AL  ++   GC PN++TY+T+I+G 
Sbjct: 241 RLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 300

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A +L EEM +G       C+PN VTYT ++D  CK G  + A  L   M +K
Sbjct: 301 CKLGRIDEAYHLLEEMVDGG------CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 354

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P++ TYNSL+  FC  ++   A  LL  M+ +G  P+VV++N ++  LCK  K+ E 
Sbjct: 355 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 414

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             LLE M+     P+  TF+T++D  C T RV+ A ELF  ++  GC   + +Y
Sbjct: 415 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 468



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 105/327 (32%), Positives = 163/327 (49%), Gaps = 40/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L     K    +    L   +   G  P++ +YN +I   CK  +V  G ++
Sbjct: 358 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 417

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L +   PD V F ++I  +C   R+  A  LF  ++  GC PN++TY++L++GLC+
Sbjct: 418 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 477

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L  EM    G     C P+ +TY T+IDGLCK   VD+A +LFLQM    +
Sbjct: 478 SRRFDQAEYLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 532

Query: 285 NPD-----------------------------------VVTYNSLIHGFCYANDWNEANC 309
            PD                                    +TY +LI GFC   + ++A  
Sbjct: 533 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALE 592

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +L  ++ +G  PDVVTF++ +D L K G++ +A  LLE M+  G+ P+T T++TL+ GFC
Sbjct: 593 ILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFC 652

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
              R   A +LF  M   GC+    +Y
Sbjct: 653 DASRTEDAVDLFEVMRQCGCEPDNATY 679



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 164/310 (52%), Gaps = 7/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  M      PP + +++ +   L K+   D    L + + S G  P++ TY+ 
Sbjct: 201 DSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSS 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G++     +L R+ RS  +P+ V + ++I G C   RI EA  L  ++   G
Sbjct: 261 LLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGG 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PNV+TY+ L++  C+ G    A+ L E M     + G V  PN  TY +++D  CK+ 
Sbjct: 321 CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV----EKGYV--PNLFTYNSLLDMFCKKD 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A +L   M  K   P+VV+YN++I G C A   +E   LL +M+     PD+VTFN
Sbjct: 375 EVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNNCVPDIVTFN 434

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ES 386
            I+D +CK  ++D A  L  L+   G  PN  T+++L+ G C + R + A+ L   M   
Sbjct: 435 TIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRK 494

Query: 387 MGCKHTVFSY 396
            GC   + +Y
Sbjct: 495 QGCSPDIITY 504



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 142/284 (50%), Gaps = 10/284 (3%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A   +E   + + ML+     P + +FN +   + KT   D    LF  +  +G  P+L 
Sbjct: 408 ATKVHEGVLLLEQMLS-NNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLV 466

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           TYN L++  CK  R      +L  + R   C +PD + + ++I GLC   R+  A  LF 
Sbjct: 467 TYNSLVHGLCKSRRFDQAEYLLREMTRKQGC-SPDIITYNTVIDGLCKSKRVDRAYKLFL 525

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++ + G  P+ +TYS +I+ LC+      A N+ E M   NG       P  +TY T+ID
Sbjct: 526 QMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLK-NG-----FDPGAITYGTLID 579

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G CK G +DKA E+   +  K   PDVVT++  I          +A  LL  M+  G+ P
Sbjct: 580 GFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVP 639

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           D VT+N ++   C   + ++A  L E+M   G  P+ +T++TL+
Sbjct: 640 DTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLV 683



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 78/228 (34%), Positives = 125/228 (54%), Gaps = 8/228 (3%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R      A    S+++GLC   +  +A   F ++    C P+ +TY+T+INGL ++    
Sbjct: 3   RKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDRLD 61

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A+ L EEM + NG F     PN  +Y T++ G CK   V+ A  L  QM  +   PDVV
Sbjct: 62  DAIRLLEEMVD-NG-FA----PNVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVV 115

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           +Y ++I+G C  +  +EA  ++ +M+ +G QP+V+T+  ++D  C+ G +D A  L+  M
Sbjct: 116 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 175

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG-CKHTVFSY 396
             RG  PN  T++ +M G C   +++ A +LF  ME  G C   VF+Y
Sbjct: 176 TERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTY 223



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 116/230 (50%), Gaps = 7/230 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P L ++N L   L K++ +D    L + +    G  PD+ TYN +I+  CK  RV   + 
Sbjct: 463 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 522

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++L     PD V ++ +I  LC    + EA  +   +   G  P  ITY TLI+G C
Sbjct: 523 LFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 582

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +TG+   AL + + + +  G +     P+ VT++  ID L K G + +A EL   M    
Sbjct: 583 KTGNLDKALEILQLLLS-KGSY-----PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 636

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           + PD VTYN+L+ GFC A+   +A  L   M   G +PD  T+  ++  L
Sbjct: 637 LVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 686



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 73/135 (54%), Gaps = 1/135 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + ML     P  +T   L+ G   KT + D  L + + L S G +PD+ T++I
Sbjct: 553 DEANNVLELMLKNGFDPGAITYGTLIDG-FCKTGNLDKALEILQLLLSKGSYPDVVTFSI 611

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+   K GR+     +L  +LR+   PD V + +L+KG C  SR  +A  LF  ++  G
Sbjct: 612 FIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASRTEDAVDLFEVMRQCG 671

Query: 208 CKPNVITYSTLINGL 222
           C+P+  TY+TL+  L
Sbjct: 672 CEPDNATYTTLVGHL 686


>gi|224123734|ref|XP_002330195.1| predicted protein [Populus trichocarpa]
 gi|222871651|gb|EEF08782.1| predicted protein [Populus trichocarpa]
          Length = 529

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 112/298 (37%), Positives = 170/298 (57%), Gaps = 15/298 (5%)

Query: 105 PPLTSFNLLF------GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           P + ++N L       G + K    D +L   K + + G+ P+  TYNILI+ FCK   V
Sbjct: 188 PNVITYNTLIDGYCKMGRIGKMYKADAIL---KEMVAKGICPNEVTYNILIDGFCKDENV 244

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           S    V G + R    P+ V +  LI GLC++ ++ EA AL  ++ +   +PNV+T++ L
Sbjct: 245 SGAMRVFGEMQRQGLRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVL 304

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ING C+      A+NLF +M     K GV   PN +TYTT+ID  CK+G ++ A  L+  
Sbjct: 305 INGFCKNKTVNEAINLFNDME----KQGV--DPNAMTYTTLIDAYCKDGRMEDAFALYNM 358

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M D+ I P+V TYN LI G C   D   A  L+ EM+ + +  DVVT+N+++D LCK G+
Sbjct: 359 MIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNILIDSLCKKGE 418

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +A +LL+ M  +G+NP+  T++TLMDG+C  G +  A  +   ME  G +  V ++
Sbjct: 419 SRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTH 476



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 9/293 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S N L   L K      +  +++ +    +  ++ ++NI++N  CK+G+++    V+ 
Sbjct: 120 LISCNPLLSGLVKESENGDMEFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIE 179

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRI---MEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +     +P+ + + +LI G C   RI    +A A+  ++ A G  PN +TY+ LI+G C
Sbjct: 180 DMKVWGVSPNVITYNTLIDGYCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFC 239

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +  +   A+ +F EM           +PN VTY  +I+GLC +G VD+A  L  QM   +
Sbjct: 240 KDENVSGAMRVFGEMQRQG------LRPNVVTYNILINGLCSDGKVDEAVALRDQMVSSD 293

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+VVT+N LI+GFC     NEA  L  +M  QGV P+ +T+  ++D  CK+G+M++A 
Sbjct: 294 LEPNVVTHNVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAF 353

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  +MI RG+ P  ST++ L+ G C  G V  A+ L   M S      V +Y
Sbjct: 354 ALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTY 406



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/270 (32%), Positives = 145/270 (53%), Gaps = 6/270 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L      D  ++L  ++ S+ L P++ T+N+LIN FCK   V+    +
Sbjct: 261 PNVVTYNILINGLCSDGKVDEAVALRDQMVSSDLEPNVVTHNVLINGFCKNKTVNEAINL 320

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+A+ +T+LI   C + R+ +A AL+  +   G  P V TY+ LI GLCR
Sbjct: 321 FNDMEKQGVDPNAMTYTTLIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCR 380

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L  EM +           + VTY  +ID LCK+G   KA +L  +M +K +
Sbjct: 381 KGDVKAARSLMNEMVSKK------LSADVVTYNILIDSLCKKGESRKAVKLLDEMFEKGL 434

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NP  VTYN+L+ G+C   +   A  +   M  +G Q +VVT NV++   C  G++++A+ 
Sbjct: 435 NPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANG 494

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           LL  M+ RG+ PN +T+  + +     G V
Sbjct: 495 LLNEMLERGLVPNRTTYEIIKEEMMEKGFV 524



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 78/250 (31%), Positives = 133/250 (53%), Gaps = 7/250 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M++    P  +T  N+L     K K  +  ++LF  +   G+ P+  TY  
Sbjct: 280 DEAVALRDQMVSSDLEPNVVTH-NVLINGFCKNKTVNEAINLFNDMEKQGVDPNAMTYTT 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CK GR+   F +   ++     P+   +  LI GLC +  +  A +L  ++ +  
Sbjct: 339 LIDAYCKDGRMEDAFALYNMMIDRGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKK 398

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +V+TY+ LI+ LC+ G +  A+ L +EM      F     P+ VTY T++DG C+EG
Sbjct: 399 LSADVVTYNILIDSLCKKGESRKAVKLLDEM------FEKGLNPSHVTYNTLMDGYCREG 452

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A  +  +M+ K    +VVT+N LI GFC      +AN LL EM+++G+ P+  T+ 
Sbjct: 453 NLRAALIVRTRMERKGKQANVVTHNVLIKGFCLKGRLEDANGLLNEMLERGLVPNRTTYE 512

Query: 328 VIMDELCKNG 337
           +I +E+ + G
Sbjct: 513 IIKEEMMEKG 522



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +++ M++ R   P ++++N L   L +        SL   + S  L  D+ TYNIL
Sbjct: 351 DAFALYNMMID-RGIFPEVSTYNCLIAGLCRKGDVKAARSLMNEMVSKKLSADVVTYNIL 409

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G       +L  +      P  V + +L+ G C E  +  A  + T+++  G 
Sbjct: 410 IDSLCKKGESRKAVKLLDEMFEKGLNPSHVTYNTLMDGYCREGNLRAALIVRTRMERKGK 469

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + NV+T++ LI G C  G    A  L  EM     + G+V  PN  TY  I + + ++GF
Sbjct: 470 QANVVTHNVLIKGFCLKGRLEDANGLLNEML----ERGLV--PNRTTYEIIKEEMMEKGF 523

Query: 269 V 269
           V
Sbjct: 524 V 524



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 63/247 (25%), Positives = 113/247 (45%), Gaps = 14/247 (5%)

Query: 157 RVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK--PNVI 213
           ++SH   +  RIL S   T       S +       +    +A+F  +   G     N I
Sbjct: 27  KLSHSLELTFRILNSLAHTKKYSKIRSFLDKFVKYEKDYSVSAIFHAISMSGDSFCVNSI 86

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKEGFVDKA 272
               L+    R    +     F+   +   K  ++ C P       ++ GL KE      
Sbjct: 87  LADMLVLAFVRNLKILRGFEAFKRAGDYGFKLSLISCNP-------LLSGLVKESENGDM 139

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           + ++ +M  + I  +V+++N +++G C     N A  ++ +M   GV P+V+T+N ++D 
Sbjct: 140 EFVYREMIKRKIELNVISFNIVVNGLCKVGKLNRAGDVIEDMKVWGVSPNVITYNTLIDG 199

Query: 333 LCKN---GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            CK    GKM +A  +L+ M+ +G+ PN  T++ L+DGFC    V+ A  +F  M+  G 
Sbjct: 200 YCKMGRIGKMYKADAILKEMVAKGICPNEVTYNILIDGFCKDENVSGAMRVFGEMQRQGL 259

Query: 390 KHTVFSY 396
           +  V +Y
Sbjct: 260 RPNVVTY 266


>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
 gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
          Length = 581

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 117/340 (34%), Positives = 171/340 (50%), Gaps = 32/340 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN--STGLFPDLYTY 145
           +EA   FD M + R   P + ++N L   L K         LFK ++     + PDL TY
Sbjct: 132 SEAKQFFDSMPS-RGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITY 190

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N LI+ FC++ +      +   ++   + PD V + S++ GL  +S + EA  +F K+  
Sbjct: 191 NTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVD 250

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVCK------ 250
            GC PN  TYS +++G CR G+    L L+EEM            N    ++CK      
Sbjct: 251 SGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDD 310

Query: 251 --------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                         P+ VTY  ++DGLCK   VDKA ELF  M D    PD+V+Y+ +++
Sbjct: 311 AHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLN 370

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C  N  ++A  L   M+++ + PDVVTFN++MD LCK GK+DEA  LL++M    V P
Sbjct: 371 GLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLP 430

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  T +TLM G C   R + A  LF  M   G    V  +
Sbjct: 431 DGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPH 470



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 107/314 (34%), Positives = 169/314 (53%), Gaps = 15/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M+  R       ++N L   L K ++ +    L + + S G  PD  TYN 
Sbjct: 62  DEADELFHKMIE-RGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNT 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  C+MG+VS        +    ++PD VA+  L+  L  E ++ EA  LF  +    
Sbjct: 121 ILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMAD 180

Query: 208 CK--PNVITYSTLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLC 264
            K  P++ITY+TLI+G CR   T  A+ LF++ +A G         P+TVTY +I+ GL 
Sbjct: 181 RKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGY-------MPDTVTYNSILLGLA 233

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI--EMMDQGVQPD 322
           ++  +D+A+E+F +M D    P+  TY+ ++ G C     N A CL +  EM ++   PD
Sbjct: 234 RKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGHCRVG--NMARCLELYEEMTEKRFSPD 291

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V+  N ++D LCK  K+D+A ++LE M   G  P+  T++ L+DG C T  V+ A ELF 
Sbjct: 292 VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351

Query: 383 SMESMGCKHTVFSY 396
           +M   GC   + SY
Sbjct: 352 TMVDNGCAPDIVSY 365



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 151/282 (53%), Gaps = 8/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +   L KT      L + + +   G+ PD+ TY I+++  C+ G+V     +
Sbjct: 8   PDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADEL 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++    + + VA+ +LI GLC +  I  A  L  ++ + G +P+ ITY+T+++GLCR
Sbjct: 68  FHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYNTILSGLCR 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF--LQMKDK 282
            G    A   F+ M +          P+ V Y  ++D L KEG V +A  LF  + M D+
Sbjct: 128 MGKVSEAKQFFDSMPSRG------YSPDVVAYNGLLDALYKEGKVAEAWGLFKTMDMADR 181

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD++TYN+LI GFC     +EA  L  +++ +G  PD VT+N I+  L +   MDEA
Sbjct: 182 KVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEA 241

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             + + M+  G  PN +T+S ++ G C  G +    EL+  M
Sbjct: 242 EEMFKKMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEM 283



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/266 (32%), Positives = 142/266 (53%), Gaps = 8/266 (3%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +   G  PD+ TY+ +I+  CK G+V+    ++  +      PD   +T ++  LC   +
Sbjct: 1   MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + EA  LF K+   GC  N + Y+ LINGLC+  +   A  L EEMA+         +P+
Sbjct: 61  VDEADELFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKG------YEPD 114

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL- 311
            +TY TI+ GLC+ G V +AK+ F  M  +  +PDVV YN L+          EA  L  
Sbjct: 115 NITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGLFK 174

Query: 312 -IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
            ++M D+ V PD++T+N ++D  C+  K DEA +L + +I +G  P+T T+++++ G   
Sbjct: 175 TMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLAR 234

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
              ++ A+E+F  M   GC     +Y
Sbjct: 235 KSNMDEAEEMFKKMVDSGCAPNGATY 260



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 161/297 (54%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  ++     P  +T  ++L G LA+  + D    +FK++  +G  P+  TY+I
Sbjct: 204 DEAMKLFKDVIAKGYMPDTVTYNSILLG-LARKSNMDEAEEMFKKMVDSGCAPNGATYSI 262

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  C++G ++    +   +    F+PD +   ++I  LC   ++ +A  +  ++   G
Sbjct: 263 VLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHKVLEEMSKIG 322

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+ L++GLC+T     A  LF  M + NG     C P+ V+Y+ +++GLCK  
Sbjct: 323 AVPDVVTYNILLDGLCKTNLVDKAHELFSTMVD-NG-----CAPDIVSYSVVLNGLCKTN 376

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A+ LF +M ++ + PDVVT+N L+ G C A   +EA  LL  M +  V PD VT  
Sbjct: 377 KVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHNVLPDGVTCT 436

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +M  LC++ + DEA RL + M+ +G   +    + ++ G C  G++  A   F SM
Sbjct: 437 TLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSM 493



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 9/311 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M++   +P   T ++++     +  +    L L++ +      PD+   N 
Sbjct: 239 DEAEEMFKKMVDSGCAPNGAT-YSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNA 297

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK  +V     VL  + +    PD V +  L+ GLC  + + +A  LF+ +   G
Sbjct: 298 VIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 357

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++++YS ++NGLC+T     A  LF+ M            P+ VT+  ++DGLCK G
Sbjct: 358 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK------LVPDVVTFNILMDGLCKAG 411

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+AK+L   M + N+ PD VT  +L+HG C     +EA  L   M+++G   DV+  N
Sbjct: 412 KLDEAKDLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHN 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +++  LC+ GK+ +A    + M+      +P+  T++TL++     GRV+ A + F  M 
Sbjct: 472 IVLAGLCREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMT 531

Query: 386 SMGCKHTVFSY 396
             GC     +Y
Sbjct: 532 GSGCAPDYVAY 542



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 89/305 (29%), Positives = 153/305 (50%), Gaps = 11/305 (3%)

Query: 88  NEAFCI--FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           N A C+  ++ M   R SP  L   N +   L K K  D    + + ++  G  PD+ TY
Sbjct: 272 NMARCLELYEEMTEKRFSPDVLLC-NAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTY 330

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NIL++  CK   V     +   ++ +   PD V+++ ++ GLC  +++ +A  LF ++  
Sbjct: 331 NILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIE 390

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
               P+V+T++ L++GLC+ G    A +L + M+  N        P+ VT TT++ GLC+
Sbjct: 391 RKLVPDVVTFNILMDGLCKAGKLDEAKDLLDVMSEHN------VLPDGVTCTTLMHGLCR 444

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM--DQGVQPDV 323
           +   D+A  LF  M +K    DV+ +N ++ G C      +A      M+  D    PDV
Sbjct: 445 DKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCREGKLAQALLFFKSMVKSDGEFSPDV 504

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT+  +++ L + G++D+A    + M   G  P+   ++TLM+G    GR   A  L  +
Sbjct: 505 VTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQA 564

Query: 384 MESMG 388
           M+  G
Sbjct: 565 MKEKG 569



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 112/218 (51%), Gaps = 4/218 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++++   L KT        LF R+    L PD+ T+NIL++  CK G++     +
Sbjct: 360 PDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDL 419

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD V  T+L+ GLC + R  EA  LF  +   G   +V+ ++ ++ GLCR
Sbjct: 420 LDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGLCR 479

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL  F+ M   +G+F     P+ VTYTT+++ L + G VD+A + F QM     
Sbjct: 480 EGKLAQALLFFKSMVKSDGEFS----PDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGC 535

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            PD V YN+L++G        +A+ L   M ++G   D
Sbjct: 536 APDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 573


>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
          Length = 615

 Score =  199 bits (506), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 175/320 (54%), Gaps = 17/320 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P ++TY
Sbjct: 38  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTY 95

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++ 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC P+V +Y+ L+ GLC    +  AL L   MA+  G       P+ V+Y T+++G  
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYNTVLNGFF 212

Query: 265 KEGF--------VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           KEG         +DKA E+   M    + PD +TYNS++HG+C +    EA   L +M  
Sbjct: 213 KEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 272

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            GV+P+VVT++ +M+ LCKNG+  EA ++ + M  RG+ P+ +T+ TL+ G C  GRV  
Sbjct: 273 DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIE 332

Query: 377 AKELFVSMESMGCKHTVFSY 396
           +++LF  M  +G K  + +Y
Sbjct: 333 SEKLFDLMVRIGVKPDIITY 352



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/303 (32%), Positives = 164/303 (54%), Gaps = 17/303 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL---NSTGLFPDLYTYNILINCFCKMG----- 156
           P + S+N L   L         L L   +      G  PD+ +YN ++N F K G     
Sbjct: 161 PDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKL 220

Query: 157 ---RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
               +     VL  ++++   PD + + S++ G C+  +  EA     K+++ G +PNV+
Sbjct: 221 TAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVV 280

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TYS+L+N LC+ G +  A  +F+ M     K G+  +P+  TY T++ G CKEG V +++
Sbjct: 281 TYSSLMNYLCKNGRSTEARKIFDSMT----KRGL--EPDIATYRTLLQGHCKEGRVIESE 334

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +LF  M    + PD++TYN+LI G C A   +EA  LL  M+  GV+PD+VT+  +++  
Sbjct: 335 KLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGY 394

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C+  +MD+A  L + M+  GV+PN  T++ ++ G   T R   AKEL+VS+   G +  +
Sbjct: 395 CRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 454

Query: 394 FSY 396
            +Y
Sbjct: 455 STY 457



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 168/322 (52%), Gaps = 7/322 (2%)

Query: 75  KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN 134
           K   Q  +TA   ++A  + + M+     P  +T  ++L G  +  +  + + +L K++ 
Sbjct: 213 KEGIQTKLTAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL-KKMR 271

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G+ P++ TY+ L+N  CK GR +    +   + +    PD   + +L++G C E R++
Sbjct: 272 SDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVI 331

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           E+  LF  +   G KP++ITY+TLI+G C  G    A  L   M +      V  KP+ V
Sbjct: 332 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVS------VGVKPDIV 385

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY T+I+G C+   +D A  LF +M    ++P+++TYN ++ G  +      A  L + +
Sbjct: 386 TYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSI 445

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
              G Q ++ T+N+I+  LCKN   DEA R+ + + L  +   T TF+ ++      GR+
Sbjct: 446 TKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRM 505

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
           + AK+LF +  + G    V +Y
Sbjct: 506 DEAKDLFAAHSANGLVPDVRTY 527



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 147/314 (46%), Gaps = 14/314 (4%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           SSGQ       P EA      M +     P + +++ L   L K         +F  +  
Sbjct: 256 SSGQ-------PKEAIGTLKKMRS-DGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTK 307

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            GL PD+ TY  L+   CK GRV     +   ++R    PD + + +LI G C   ++ E
Sbjct: 308 RGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDE 367

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  L   + + G KP+++TY TLING CR      AL LF+EM +          PN +T
Sbjct: 368 ATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG------VSPNIIT 421

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  I+ GL        AKEL++ +       ++ TYN ++HG C  N  +EA  +   + 
Sbjct: 422 YNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLC 481

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
              +Q +  TFN+++  L K G+MDEA  L       G+ P+  T+S + +     G + 
Sbjct: 482 LTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLE 541

Query: 376 HAKELFVSMESMGC 389
              +LF+SME  GC
Sbjct: 542 ELDDLFLSMEENGC 555



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 139/305 (45%), Gaps = 15/305 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D A+    L+  CK   +G +      E+  +FD M+ +   P  +T   L+ GC    K
Sbjct: 313 DIATYRTLLQGHCK---EGRVI-----ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK 364

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
             D    L   + S G+ PD+ TY  LIN +C++ R+     +   ++ S  +P+ + + 
Sbjct: 365 -MDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSGVSPNIITYN 423

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            +++GL    R   A  L+  +   G +  + TY+ +++GLC+   T  AL +F+ +   
Sbjct: 424 IILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLT 483

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
           + +        T T+  +I  L K G +D+AK+LF       + PDV TY+ +       
Sbjct: 484 DLQL------ETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQ 537

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
               E + L + M + G   D    N I+ +L + G +  A   L ++  +  +   ST 
Sbjct: 538 GSLEELDDLFLSMEENGCSADSRMLNSIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTA 597

Query: 362 STLMD 366
           S L++
Sbjct: 598 SFLLE 602


>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
          Length = 818

 Score =  199 bits (505), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD ML+ R   P + ++++L     K   Y   ++L   + + G  PD+ TYN+L
Sbjct: 269 DALAVFDDMLH-RGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVL 327

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C  G V     +L  +      PDAV +T ++K LC   R  E   L  ++ +  C
Sbjct: 328 INAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +T++T++  LC+ G    A+ + + M+         C  + VTY++I+DGLC  G 
Sbjct: 388 APDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHG------CVADIVTYSSILDGLCDVGR 441

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A EL  ++K     PD + Y +++ G C    W  A  L+ EM+     PD VTFN 
Sbjct: 442 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNT 501

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+ G +D A R++E M   G +P+  T++ ++DG C    ++ A EL   ++S G
Sbjct: 502 VVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCG 561

Query: 389 CKHTVFSY 396
           CK  + ++
Sbjct: 562 CKPDIVTF 569



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 148/280 (52%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN +   L +    D  + +   ++  G   D+ TY+ +++  C +GRV     +
Sbjct: 389 PDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVEL 448

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+      PD +A+T+++KGLC+  +   A  L  ++    C P+ +T++T++  LC+
Sbjct: 449 LSRLKSYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQ 508

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + E+M+  NG     C P+ VTY  IIDGLC E  +D A EL   ++    
Sbjct: 509 KGLVDRAIRVVEQMSE-NG-----CSPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGC 562

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VT+N+L+ G C  + W +A  L+  MM     PD +TFN ++  LC+ G + +A  
Sbjct: 563 KPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIE 622

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            L++M   G  PN+ST+S ++D     G+   A EL   M
Sbjct: 623 TLKIMAENGCVPNSSTYSIVVDALLKAGKAQAALELLSGM 662



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  +   L  ++ +  V  L   + S    PD  T+N ++   C+ G V     V
Sbjct: 354 PDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTFNTIVTSLCQQGLVDRAIEV 413

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +       D V ++S++ GLC   R+ +A  L ++LK++GCKP+ I Y+T++ GLC 
Sbjct: 414 VDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRLKSYGCKPDTIAYTTVLKGLCS 473

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T     A  L  EM   +      C P+ VT+ T++  LC++G VD+A  +  QM +   
Sbjct: 474 TEQWERAEELMAEMLCSD------CPPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGC 527

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD+VTYN +I G C  +  ++A  LL ++   G +PD+VTFN ++  LC   + ++A +
Sbjct: 528 SPDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQ 587

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  M+     P+  TF+T++   C  G +  A E    M   GC     +Y
Sbjct: 588 LMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTY 639



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN +   L +    D  + + ++++  G  PD+ TYN +I+  C    +     
Sbjct: 493 PPDEVTFNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAME 552

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +      PD V F +L+KGLC   R  +A  L   +    C P+ +T++T+I  LC
Sbjct: 553 LLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLC 612

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+   + MA  NG     C PN+ TY+ ++D L K G    A EL   M   N
Sbjct: 613 QKGLLTQAIETLKIMAE-NG-----CVPNSSTYSIVVDALLKAGKAQAALELLSGM--TN 664

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD++TYN++I     A    EA  LL  M+  G+ PD  T+  +   +C+    D A 
Sbjct: 665 GTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAV 724

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+L  +   G++P+T+ ++ ++ GFC   R + A + F  M S GC     +Y
Sbjct: 725 RMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTY 777



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 134/284 (47%), Gaps = 8/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L      D  + L   L S G  PD+ T+N L+   C + R      +
Sbjct: 529 PDIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFNTLLKGLCGVDRWEDAEQL 588

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++RS   PD + F ++I  LC +  + +A      +   GC PN  TYS +++ L +
Sbjct: 589 MANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAENGCVPNSSTYSIVVDALLK 648

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL L   M NG         P+ +TY T+I  L K G +++A +L   M    +
Sbjct: 649 AGKAQAALELLSGMTNGT--------PDLITYNTVISNLTKAGKMEEALDLLRVMVSNGL 700

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY SL +G C  +  + A  +L  + D G+ PD   +N ++   C++ + D A  
Sbjct: 701 CPDTTTYRSLAYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAID 760

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
               M+  G  P+ ST+  L++     G ++ AK L  S+ S+G
Sbjct: 761 CFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKRLLASLCSLG 804



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 14/220 (6%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R+C  P  V    LIK LC++ R+ +A  +F    A G    V+TY+T++NG CR G   
Sbjct: 182 RNC--PPVVPCNILIKRLCSDGRVSDAERVFA---ALGPSATVVTYNTMVNGYCRAGRIE 236

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L           G+   P+T T+  +I  LC  G +  A  +F  M  +  +P VV
Sbjct: 237 DARRLIN---------GMPFPPDTFTFNPLIRALCVRGRIPDALAVFDDMLHRGCSPSVV 287

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY+ L+   C  + + +A  LL EM  +G +PD+VT+NV+++ +C  G +DEA  +L  +
Sbjct: 288 TYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNL 347

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
              G  P+  T++ ++   C + R    +EL   M S  C
Sbjct: 348 PSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNC 387



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 14/215 (6%)

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCK--PNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           ++ L     I EA  LF  + + G +  P V+  + LI  LC  G    A  +F  +   
Sbjct: 157 LRSLVQRGEIDEALVLFDSMASGGGRNCPPVVPCNILIKRLCSDGRVSDAERVFAAL--- 213

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
            G    V     VTY T+++G C+ G ++ A+ L   M      PD  T+N LI   C  
Sbjct: 214 -GPSATV-----VTYNTMVNGYCRAGRIEDARRLINGMP---FPPDTFTFNPLIRALCVR 264

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
               +A  +  +M+ +G  P VVT+++++D  CK     +A  LL+ M  +G  P+  T+
Sbjct: 265 GRIPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTY 324

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + L++  C  G V+ A  +  ++ S GCK    +Y
Sbjct: 325 NVLINAMCNEGDVDEALNILSNLPSHGCKPDAVTY 359



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 57/138 (41%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A    + +  M    P L ++N +   L K    +  L L + + S GL PD  TY  L
Sbjct: 651 KAQAALELLSGMTNGTPDLITYNTVISNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSL 710

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
               C+         +L R+  +  +PD   +  ++ G C + R   A   F  + + GC
Sbjct: 711 AYGVCREDGTDRAVRMLRRVQDTGLSPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGC 770

Query: 209 KPNVITYSTLINGLCRTG 226
            P+  TY  L+  L   G
Sbjct: 771 MPDESTYVILLEALAYGG 788


>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Glycine max]
          Length = 742

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/299 (35%), Positives = 168/299 (56%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R + P + S++++     + +    VL L + L   GL P+ YTYN +I+  CK GR
Sbjct: 278 MEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGR 337

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     VL  +      PD V +T+LI G      +     LF ++K     P+ +TY++
Sbjct: 338 VVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTS 397

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I+GLC+ G  + A  LF EM +         KP+ VTYT +IDG CK G + +A  L  
Sbjct: 398 MIHGLCQAGKVVEARKLFSEMLSKG------LKPDEVTYTALIDGYCKAGEMKEAFSLHN 451

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM +K + P+VVTY +L+ G C   + + AN LL EM ++G+QP+V T+N +++ LCK G
Sbjct: 452 QMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVG 511

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++A +L+E M L G  P+T T++T+MD +C  G +  A EL   M   G + T+ ++
Sbjct: 512 NIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTF 570



 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/291 (35%), Positives = 158/291 (54%), Gaps = 6/291 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L  +   P   ++N +   L KT        + + + +  +FPD   Y  LI+ F K G 
Sbjct: 313 LQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFPDNVVYTTLISGFGKSGN 372

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           VS  + +   + R    PD V +TS+I GLC   +++EA  LF+++ + G KP+ +TY+ 
Sbjct: 373 VSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTA 432

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G    A +L  +M            PN VTYT ++DGLCK G VD A EL  
Sbjct: 433 LIDGYCKAGEMKEAFSLHNQMVEKG------LTPNVVTYTALVDGLCKCGEVDIANELLH 486

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M +K + P+V TYN+LI+G C   +  +A  L+ EM   G  PD +T+  IMD  CK G
Sbjct: 487 EMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMG 546

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +M +A  LL +M+ +G+ P   TF+ LM+GFC++G +   + L   M   G
Sbjct: 547 EMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKG 597



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 163/309 (52%), Gaps = 8/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKT-KHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  +FD +LN       + S NL    L+ +     T   +F+  +  G+  +  +YNI
Sbjct: 199 EAGKLFDKLLNY-GVLVSVDSCNLFLARLSNSFDGIRTAFRVFREYSEVGVCWNTVSYNI 257

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  C++G+V     +L ++      PD V+++ ++ G C   ++ +   L  +L+  G
Sbjct: 258 ILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKG 317

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN  TY+++I+ LC+TG  + A  +   M N          P+ V YTT+I G  K G
Sbjct: 318 LKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQR------IFPDNVVYTTLISGFGKSG 371

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V    +LF +MK K I PD VTY S+IHG C A    EA  L  EM+ +G++PD VT+ 
Sbjct: 372 NVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYT 431

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK G+M EA  L   M+ +G+ PN  T++ L+DG C  G V+ A EL   M   
Sbjct: 432 ALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEK 491

Query: 388 GCKHTVFSY 396
           G +  V +Y
Sbjct: 492 GLQPNVCTY 500



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 105/306 (34%), Positives = 161/306 (52%), Gaps = 7/306 (2%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           + +FD M   +  P  +T  +++ G L +         LF  + S GL PD  TY  LI+
Sbjct: 377 YKLFDEMKRKKIVPDFVTYTSMIHG-LCQAGKVVEARKLFSEMLSKGLKPDEVTYTALID 435

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
            +CK G +   F +  +++    TP+ V +T+L+ GLC    +  A  L  ++   G +P
Sbjct: 436 GYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQP 495

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           NV TY+ LINGLC+ G+   A+ L EEM +  G F     P+T+TYTTI+D  CK G + 
Sbjct: 496 NVCTYNALINGLCKVGNIEQAVKLMEEM-DLAGFF-----PDTITYTTIMDAYCKMGEMA 549

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA EL   M DK + P +VT+N L++GFC +    +   L+  M+D+G+ P+  TFN +M
Sbjct: 550 KAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLM 609

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            + C    M     + + M  +GV P+T+T++ L+ G C    +  A  L   M   G  
Sbjct: 610 KQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGFS 669

Query: 391 HTVFSY 396
            T  SY
Sbjct: 670 LTAASY 675



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/241 (26%), Positives = 109/241 (45%), Gaps = 6/241 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K  + +  + L + ++  G FPD  TY  +++ +CKMG ++    +
Sbjct: 495 PNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGEMAKAHEL 554

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P  V F  L+ G C    + +   L   +   G  PN  T+++L+   C 
Sbjct: 555 LRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERLIKWMLDKGIMPNATTFNSLMKQYCI 614

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +    + +++ M       GVV  P+T TY  +I G CK   + +A  L  +M +K  
Sbjct: 615 RNNMRATIEIYKGMHAQ----GVV--PDTNTYNILIKGHCKARNMKEAWFLHKEMVEKGF 668

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +    +YNSLI GF     + EA  L  EM   G   +   +++ +D   + G  +    
Sbjct: 669 SLTAASYNSLIKGFYKRKKFEEARKLFEEMRTHGFIAEKEIYDIFVDVNYEEGNWENTLE 728

Query: 345 L 345
           L
Sbjct: 729 L 729



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 62/209 (29%), Positives = 111/209 (53%), Gaps = 7/209 (3%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VALNLFE 236
           + F    + L     ++EA  LF KL  +G   +V + +  +  L  +   I  A  +F 
Sbjct: 182 LVFDVFFQVLVEAGLLLEAGKLFDKLLNYGVLVSVDSCNLFLARLSNSFDGIRTAFRVFR 241

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           E +    + GV    NTV+Y  I+  LC+ G V +A  L +QM+ +   PDVV+Y+ ++ 
Sbjct: 242 EYS----EVGVCW--NTVSYNIILHLLCQLGKVKEAHSLLIQMEFRGNVPDVVSYSVIVD 295

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+C      +   L+ E+  +G++P+  T+N I+  LCK G++ EA ++L +M  + + P
Sbjct: 296 GYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKNQRIFP 355

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +   ++TL+ GF  +G V+   +LF  M+
Sbjct: 356 DNVVYTTLISGFGKSGNVSVEYKLFDEMK 384



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 17/193 (8%)

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-----CKPNT 253
           L    K +G  P  + +      L   G  + A  LF+++ N    +GV+     C    
Sbjct: 170 LIYTYKDWGAHP--LVFDVFFQVLVEAGLLLEAGKLFDKLLN----YGVLVSVDSCNLFL 223

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
              +   DG      +  A  +F +  +  +  + V+YN ++H  C      EA+ LLI+
Sbjct: 224 ARLSNSFDG------IRTAFRVFREYSEVGVCWNTVSYNIILHLLCQLGKVKEAHSLLIQ 277

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  +G  PDVV+++VI+D  C+  ++ +  +L+E +  +G+ PN  T+++++   C TGR
Sbjct: 278 MEFRGNVPDVVSYSVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGR 337

Query: 374 VNHAKELFVSMES 386
           V  A+++   M++
Sbjct: 338 VVEAEQVLRVMKN 350



 Score = 72.0 bits (175), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 10/216 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  +     K         L + +   GL P + T+N+L+N FC  G +  G  +
Sbjct: 530 PDTITYTTIMDAYCKMGEMAKAHELLRIMLDKGLQPTIVTFNVLMNGFCMSGMLEDGERL 589

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L     P+A  F SL+K  C  + +     ++  + A G  P+  TY+ LI G C+
Sbjct: 590 IKWMLDKGIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCK 649

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  L +EM                +Y ++I G  K    ++A++LF +M+    
Sbjct: 650 ARNMKEAWFLHKEMVEKGFSL------TAASYNSLIKGFYKRKKFEEARKLFEEMRTHGF 703

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
             +   Y+  +       +W       +E+ D+ ++
Sbjct: 704 IAEKEIYDIFVDVNYEEGNWENT----LELCDEAIE 735


>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
 gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
          Length = 599

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           N+A  +F  +L+   +P  +   +L+ G C+A +  +D    LF  +N  G  P   TYN
Sbjct: 27  NDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYN 84

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ++I+  CK G +     ++ +++     PD V + +++ GLC  SR+ EA  LF +++  
Sbjct: 85  VMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERL 144

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC PN  +++T+I GLC+      A  +F EM   +        P++ +Y  +IDGL K 
Sbjct: 145 GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD------IPPDSWSYGILIDGLAKA 198

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++A +LF +M D  I P  VTYN +IHG C A   +EA  L   M  +G +P   TF
Sbjct: 199 GKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D  CK GK+DEA RLL+ M   G  P+  T+STL+ G C   RV+ A+ L   M  
Sbjct: 259 NILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318

Query: 387 MGCKHTVFS 395
             CK TV +
Sbjct: 319 RQCKPTVVT 327



 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 164/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M  +  +P   +   ++ G   ++K  D    +F  + +  + PD ++Y I
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK-IDQACQVFHEMEAKDIPPDSWSYGI 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K G+++  + +  R+L S  TP AV +  +I G+C    + EA  LF  +++ G
Sbjct: 191 LIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+  T++ LI+  C+ G    A  L + M + +G       P+ VTY+T+I GLC   
Sbjct: 251 CRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTD-DGHV-----PDVVTYSTLISGLCSIA 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A+ L   M  +   P VVT N+LIHG C A    EA  +L  M+  G  PDVVT+N
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 364

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C+ G+ + A  LL  M+ RG+ PN  T++ L+ G C   R+  A  +F  M+S 
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 388 GCKHTVFSY 396
           GC   +F+Y
Sbjct: 425 GCAPNLFTY 433



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 161/295 (54%), Gaps = 9/295 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA+ +F  ML+   +P  +T   ++ G CLA T   D  L LFK + S G  P  +T+N
Sbjct: 202 NEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYT--LDEALELFKSMRSKGCRPSRFTFN 259

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI+  CK G++   F +L R+      PD V +++LI GLC+ +R+ +A  L   +   
Sbjct: 260 ILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKR 319

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            CKP V+T +TLI+GLC+ G    A  + + M + +G+      P+ VTY T++ G C+ 
Sbjct: 320 QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQ-----SPDVVTYNTLVHGHCRA 373

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G  ++A+EL   M  + + P+VVTY +L+ G C AN   EA  +  +M   G  P++ T+
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             ++   C  G++D   +L   M+  G++P+   + TL    C +GR   A E+ 
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 488



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 131/258 (50%), Gaps = 41/258 (15%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +PD+ ++  LI GL    ++ +A  LF KL   G  P+ + Y++LI+GLC       A  
Sbjct: 7   SPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDARE 66

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           LF +M N  G     C P+ VTY  +ID  CK G +++A +L  +M +    PDVVTYN+
Sbjct: 67  LFADM-NRRG-----CPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNT 120

Query: 294 LIHGFCYANDWNEANCLLIEM------------------------MDQGVQ--------- 320
           ++ G C ++   EA  L  EM                        +DQ  Q         
Sbjct: 121 VMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEAKD 180

Query: 321 --PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PD  ++ +++D L K GK++EA +L + M+  G+ P+  T++ ++ G CL   ++ A 
Sbjct: 181 IPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSAVTYNVVIHGMCLAYTLDEAL 240

Query: 379 ELFVSMESMGCKHTVFSY 396
           ELF SM S GC+ + F++
Sbjct: 241 ELFKSMRSKGCRPSRFTF 258



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 115/269 (42%), Gaps = 50/269 (18%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + + M+  +  P  +T   L+ G L K         +   + S+G  PD+ TYN 
Sbjct: 307 DDARHLLEDMVKRQCKPTVVTQNTLIHG-LCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 365

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C+ G+      +L  ++     P+ V +T+L+ GLC  +R+ EA  +F ++K+ G
Sbjct: 366 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 425

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC---KPNTVTYTTIIDGLC 264
           C PN+ TY+ LI G C  G     L LF EM         VC    P+ V Y T+   LC
Sbjct: 426 CAPNLFTYTALILGFCSAGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELC 476

Query: 265 KEGFVDKAKELFLQ----MKDKNINPDVVTYN---------------------------- 292
           K G   +A E+  +    ++ +    +V  +                             
Sbjct: 477 KSGRSARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQLPA 536

Query: 293 -----SLIHGFCYANDWNEANCLLIEMMD 316
                SL+ G C +    EA  +L E+MD
Sbjct: 537 PERCASLVAGLCKSGQGGEARAVLEEIMD 565


>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic [Vitis vinifera]
          Length = 772

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            E     D M N    P   T FN L   L +  H    L +   +   G  PD++TYN 
Sbjct: 298 EEVLSFIDEMSNEGFRPDRFT-FNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNS 356

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   CK+G V     +L +++   F+P+ V + +LI  LC E+++ EA  L   L + G
Sbjct: 357 LIFGLCKLGEVEEAVEILNQMILRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKG 416

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V T+++LI GLC T +  +A+ LFEEM          C P+  TY  +ID LC  G
Sbjct: 417 ILPDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKG------CHPDEFTYNMLIDSLCSRG 470

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L  +M+    + +VVTYN+LI GFC      EA  +  EM  QG+  +VVT+N
Sbjct: 471 RLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYN 530

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCKN +++EA++L++ M++ G+ P+  T+++L+  FC  G +  A ++  +M S 
Sbjct: 531 TLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSN 590

Query: 388 GCKHTVFSY 396
           GC+    +Y
Sbjct: 591 GCEPDSVTY 599



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 161/325 (49%), Gaps = 29/325 (8%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P +T+FN+L   L +       + + + + S GL PD  T+  L+  F + G ++ 
Sbjct: 205 RGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNG 264

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  +++ +      V    L+ G C E RI E  +   ++   G +P+  T+++L+N
Sbjct: 265 ALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVN 324

Query: 221 GLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--------------P 251
           GLCR GH   AL + + M                 G  K G V +              P
Sbjct: 325 GLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILRDFSP 384

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           NTVTY T+I  LCKE  V++A EL   +  K I PDV T+NSLI G C  N+   A  L 
Sbjct: 385 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAMELF 444

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM  +G  PD  T+N+++D LC  G+++EA  LL+ M   G + N  T++TL+DGFC  
Sbjct: 445 EEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKN 504

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            R+  A+E+F  ME  G    V +Y
Sbjct: 505 KRIEEAEEIFDEMELQGISRNVVTY 529



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 152/310 (49%), Gaps = 9/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I + M+ +R   P   ++N L   L K    +    L + L S G+ PD+ T+N 
Sbjct: 368 EEAVEILNQMI-LRDFSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNS 426

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C          +   +      PD   +  LI  LC+  R+ EA +L  ++++ G
Sbjct: 427 LIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSG 486

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C  NV+TY+TLI+G C+      A  +F+EM   G  +       N VTY T+IDGLCK 
Sbjct: 487 CSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISR-------NVVTYNTLIDGLCKN 539

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V++A +L  QM  + + PD  TYNSL+  FC A D  +A  ++  M   G +PD VT+
Sbjct: 540 RRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTY 599

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  L K G+++ ASRLL  + L+G+     T++ ++       R + A  LF  M  
Sbjct: 600 GTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVRLFREMME 659

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 660 KGDPPDAVTY 669



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 138/285 (48%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  T ++   + LF+ + + G  PD +TYN+LI+  C  GR+     +
Sbjct: 419 PDVCTFNSLIQGLCLTNNHRLAMELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSL 478

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S  + + V + +LI G C   RI EA  +F +++  G   NV+TY+TLI+GLC+
Sbjct: 479 LKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEIFDEMELQGISRNVVTYNTLIDGLCK 538

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L ++M           KP+  TY +++   C+ G + KA ++   M     
Sbjct: 539 NRRVEEAAQLMDQMLMEG------LKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGC 592

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY +LI G   A     A+ LL  +  +G+     T+N ++  L +  +  EA R
Sbjct: 593 EPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKRTSEAVR 652

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCL-TGRVNHAKELFVSMESMG 388
           L   M+ +G  P+  T+  +  G C   G +  A +  V M   G
Sbjct: 653 LFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAVDFLVEMTDKG 697



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 141/320 (44%), Gaps = 52/320 (16%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L   L      +  LSL K + S+G   ++ TYN LI+ FCK  R+     +
Sbjct: 454 PDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGFCKNKRIEEAEEI 513

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     + + V + +LI GLC   R+ EAA L  ++   G KP+  TY++L+   CR
Sbjct: 514 FDEMELQGISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPDKFTYNSLLTYFCR 573

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD-------------- 270
            G    A ++ + M + NG     C+P++VTY T+I GL K G V+              
Sbjct: 574 AGDIKKAADIVQTMTS-NG-----CEPDSVTYGTLILGLSKAGRVELASRLLRTVQLKGM 627

Query: 271 ---------------------KAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-WNEAN 308
                                +A  LF +M +K   PD VTY  +  G C       EA 
Sbjct: 628 VLAPQTYNPVIKALFREKRTSEAVRLFREMMEKGDPPDAVTYKVVFRGLCSGGGPIGEAV 687

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM--- 365
             L+EM D+G  PD  +F ++ + LC     D   +L+   +++  N + S  S +M   
Sbjct: 688 DFLVEMTDKGFLPDFSSFLMLAEGLCALSMEDTLIKLVN-RVMKQANFSDSEVSMIMGFL 746

Query: 366 ------DGFCLTGRVNHAKE 379
                 D     GR+  ++E
Sbjct: 747 KIRKFQDALATLGRILSSRE 766



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 125/302 (41%), Gaps = 14/302 (4%)

Query: 103 SPPPLTSF------NLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKM 155
           SP P T          L   L +    D++L L    +    F P    Y  ++    K 
Sbjct: 59  SPSPTTQLPQNFTPKQLRDALRRQSDEDSILDLLDWASKQPNFVPSSVIYEEVLRKLGKD 118

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVIT 214
           G       VL  +  +        F  LI+         EA A+   ++  FG K +  T
Sbjct: 119 GSFGSMRRVLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFT 178

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ L+N L   G+ +  + +        G      KP+  T+  +I  LC+   +  A  
Sbjct: 179 YNFLLNVLV-DGNKLKLVEIVNSRMVSRG-----IKPDVTTFNILIKALCRAHQIRPAIL 232

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +  +M    ++PD  T+ +L+ GF    + N A  +  +M+  G     VT NV++   C
Sbjct: 233 MMEEMGSYGLSPDEKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYC 292

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G+++E    ++ M   G  P+  TF++L++G C  G V HA E+   M   G    +F
Sbjct: 293 KEGRIEEVLSFIDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHALEILDVMLQEGFDPDIF 352

Query: 395 SY 396
           +Y
Sbjct: 353 TY 354


>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
 gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
          Length = 331

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 164/296 (55%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R +PP   ++  +   L KTK  D  L+  + + + G+ PD + YN +++  C+  +V  
Sbjct: 3   RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 62

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             ++  ++++    P+ V + +LI GLC   RI  A  LF ++   G  P  ++Y+TLI+
Sbjct: 63  ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 122

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+    + A ++F++M   N      C PN VTYTT+IDGL K G V  A E+   M 
Sbjct: 123 GFCKKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV 176

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K + P+V TY+ LI GFC     +EA+ LL +M+ QG+ P VVT+N++++ LC+  K++
Sbjct: 177 KKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLE 236

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A +L   M  R  +P   T++TL+   C   +++ A  L+  M + GC     +Y
Sbjct: 237 DAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITY 292



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P    +N +   L + +  +    LF+++    + P++ TYN LIN  CK  R+  
Sbjct: 38  RGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIET 97

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            + +   +    + P  V++ +LI G C +  ++ A  +F K+    C PNV+TY+TLI+
Sbjct: 98  AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID 157

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GL ++G    A     E+ +G  K GV   PN  TY+ +IDG CK   VD+A +L  QM 
Sbjct: 158 GLSKSGKVQAA----AEVLDGMVKKGVT--PNVATYSCLIDGFCKVRRVDEAHKLLEQMV 211

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + I P VVTYN L++  C A+   +A  L   M  +   P VVT+N ++  LC + ++D
Sbjct: 212 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 271

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            A RL   MI +G  P+  T+ TL  G    G+V+ A+EL   M+
Sbjct: 272 GAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 316



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 7/269 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M+  R +P  +T +N L   L K    +T   LFK +   G  P   +YN 
Sbjct: 61  EEARLLFEKMVKQRINPNVVT-YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 119

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK   +     V  +++RS   P+ V +T+LI GL    ++  AA +   +   G
Sbjct: 120 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 179

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV TYS LI+G C+      A  L E+M       G+   P  VTY  +++ LC+  
Sbjct: 180 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ----GIA--PTVVTYNILLNSLCRAD 233

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A +LF  M  +  +P VVTYN+L+   C+    + A+ L  EM+ +G  PD +T++
Sbjct: 234 KLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYD 293

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNP 356
            +   L + GK+ EA  L+E M L   NP
Sbjct: 294 TLAWGLTRAGKVHEAQELMEKMKLTKRNP 322


>gi|242069957|ref|XP_002450255.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
 gi|241936098|gb|EES09243.1| hypothetical protein SORBIDRAFT_05g002620 [Sorghum bicolor]
          Length = 924

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 117/345 (33%), Positives = 180/345 (52%), Gaps = 37/345 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN------STGLFPD 141
           ++A  +FD +L +   P  + + N L   +++ K   +      R N      S  + PD
Sbjct: 25  HDALKLFDELL-LHARPASVRALNQLLSVVSRAKCSSSSKLAVSRFNRMLRDCSNKVAPD 83

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-ALF 200
             TY+I+I CFC++GR+  GF   G IL++ +  D +    L+KGLC   R+ EA   L 
Sbjct: 84  CCTYSIVIGCFCRIGRLELGFAAFGLILKTGWRVDDIVVNQLLKGLCDTKRVGEAMHVLL 143

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------NGK 244
            ++   GC+  V++Y+TL+ GLC       A  L   M +G                NG 
Sbjct: 144 RQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGF 203

Query: 245 F--GVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           F  G V K           P+ VTY TIIDGLCK   VD+A+++F QM +K + P+ VTY
Sbjct: 204 FNEGQVDKAYSLFLEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTY 263

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N++I G C A + + A  +  +M+D+GV+P  VT+N I+D LCK   +D A  + + MI 
Sbjct: 264 NTIIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMID 323

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           RGV P+  T++T++DG C    ++ A+ +F  M   G K    +Y
Sbjct: 324 RGVKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTY 368



 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 163/293 (55%), Gaps = 12/293 (4%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRL---NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           + S+N L   L   +  +    L   +     +   PD+ +YNI+IN F   G+V   + 
Sbjct: 155 VVSYNTLLKGLCDRRRAEEARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYS 214

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +    L    +PD V + ++I GLC    +  A  +F ++   G KPN +TY+T+I+GLC
Sbjct: 215 LF---LEMGVSPDVVTYNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLC 271

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +     +A  +F++M +     GV  KP+ VTY TIIDGLCK   VD+A+ +F QM D+ 
Sbjct: 272 KAQEVDMAEGVFQKMVDK----GV--KPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRG 325

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD VTYN++I G C A   ++A  +  +M+D+GV+PD +T+ +I+D LCK   +D A 
Sbjct: 326 VKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAE 385

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + + MI +GV PN  T++ L+ G+  TG+     +    M +   +  VF+Y
Sbjct: 386 GVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTY 438



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 169/310 (54%), Gaps = 12/310 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +F   L M  SP  +T +N +   L K +  D    +F+++   G+ P+  TYN 
Sbjct: 210 DKAYSLF---LEMGVSPDVVT-YNTIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNT 265

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK   V     V  +++     P  V + ++I GLC    +  A  +F ++   G
Sbjct: 266 IIDGLCKAQEVDMAEGVFQKMVDKGVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRG 325

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+ +TY+T+I+GLC+      A  +F++M +     GV  KP+ +TYT IIDGLCK  
Sbjct: 326 VKPDHVTYNTIIDGLCKAQAIDKAEGVFQQMIDK----GV--KPDNLTYTIIIDGLCKAQ 379

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A+ +F QM DK + P+  TYN LIHG+     W E    + EM    ++PDV T+ 
Sbjct: 380 SVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYG 439

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCKNGK +EA  L + MI +G+ P+ + +  ++ G+   G ++   +L   M + 
Sbjct: 440 LLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVAN 499

Query: 388 GC--KHTVFS 395
           G    H +F+
Sbjct: 500 GISPNHRIFN 509



 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 11/310 (3%)

Query: 89  EAFCIFDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EA  +   M++ + S   P + S+N++          D   SLF  +   G+ PD+ TYN
Sbjct: 173 EARELLHMMVDGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYN 229

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +I+  CK   V     V  +++     P+ V + ++I GLC    +  A  +F K+   
Sbjct: 230 TIIDGLCKAQEVDRAEDVFQQMVEKGVKPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDK 289

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KP+ +TY+T+I+GLC+      A  +F++M +     GV  KP+ VTY TIIDGLCK 
Sbjct: 290 GVKPSNVTYNTIIDGLCKAQAVDRAEGVFQQMIDR----GV--KPDHVTYNTIIDGLCKA 343

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +DKA+ +F QM DK + PD +TY  +I G C A   + A  +  +M+D+GV+P+  T+
Sbjct: 344 QAIDKAEGVFQQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTY 403

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++      G+ +E  + ++ M    + P+  T+  L+D  C  G+ N A+ LF SM  
Sbjct: 404 NCLIHGYLSTGQWEEVVQRIKEMSAHDLEPDVFTYGLLLDYLCKNGKCNEARSLFDSMIR 463

Query: 387 MGCKHTVFSY 396
            G K +V  Y
Sbjct: 464 KGIKPSVTIY 473



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 165/313 (52%), Gaps = 7/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A + + A  +F  M++    P   T   L+ G L+ T  ++ V+   K +++  L PD++
Sbjct: 378 AQSVDRAEGVFQQMIDKGVKPNNGTYNCLIHGYLS-TGQWEEVVQRIKEMSAHDLEPDVF 436

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY +L++  CK G+ +    +   ++R    P    +  ++ G   +  + E   L   +
Sbjct: 437 TYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLM 496

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            A G  PN   ++T+I    +       +++F +M            PN VTY T+ID L
Sbjct: 497 VANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQG------LSPNVVTYGTLIDAL 550

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G VD A   F QM ++ + P+ V +NSL++G C  + W +   L +EM++QG++PD+
Sbjct: 551 CKLGRVDDAVLQFNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDI 610

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V FN ++  LCK G++ EA RL++ M+  G+ P+  +++TL+DG C   R++ A +L   
Sbjct: 611 VFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDG 670

Query: 384 MESMGCKHTVFSY 396
           M S G K  + SY
Sbjct: 671 MVSAGLKPNIVSY 683



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/290 (34%), Positives = 159/290 (54%), Gaps = 13/290 (4%)

Query: 111 NLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           N L   L  TK     +  L +++   G    + +YN L+   C   R      +L  ++
Sbjct: 123 NQLLKGLCDTKRVGEAMHVLLRQMPEVGCRLGVVSYNTLLKGLCDRRRAEEARELLHMMV 182

Query: 170 R---SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
               S  +PD V++  +I G   E ++ +A +LF ++   G  P+V+TY+T+I+GLC+  
Sbjct: 183 DGQDSSCSPDVVSYNIVINGFFNEGQVDKAYSLFLEM---GVSPDVVTYNTIIDGLCKAQ 239

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A ++F++M       GV  KPN VTY TIIDGLCK   VD A+ +F +M DK + P
Sbjct: 240 EVDRAEDVFQQMVEK----GV--KPNNVTYNTIIDGLCKAQEVDMAEGVFQKMVDKGVKP 293

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
             VTYN++I G C A   + A  +  +M+D+GV+PD VT+N I+D LCK   +D+A  + 
Sbjct: 294 SNVTYNTIIDGLCKAQAVDRAEGVFQQMIDRGVKPDHVTYNTIIDGLCKAQAIDKAEGVF 353

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + MI +GV P+  T++ ++DG C    V+ A+ +F  M   G K    +Y
Sbjct: 354 QQMIDKGVKPDNLTYTIIIDGLCKAQSVDRAEGVFQQMIDKGVKPNNGTY 403



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 158/295 (53%), Gaps = 12/295 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN +    AK    D V+ +F ++   GL P++ TY  LI+  CK+GRV    + 
Sbjct: 503 PNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQ 562

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++    TP+ V F SL+ GLC   +  +   LF ++   G +P+++ ++T++  LC+
Sbjct: 563 FNQMINEGVTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGIRPDIVFFNTVLCNLCK 622

Query: 225 TGHTIVALNLFEEMANGNGKFGVVC---KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            G  + A  L + M         VC   KP+ ++Y T+IDG C    +D+A +L   M  
Sbjct: 623 EGRVMEARRLIDSM---------VCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVS 673

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P++V+YN+L+HG+C A   + A CL  EM+ +GV P V T+N I++ L ++G+  E
Sbjct: 674 AGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSE 733

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L   MI      +  T+S ++DGFC     + A ++F S+ SM  +  + ++
Sbjct: 734 ARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITF 788



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ LL   L K    +   SLF  +   G+ P +  Y I+++ + K G +S    +
Sbjct: 433 PDVFTYGLLLDYLCKNGKCNEARSLFDSMIRKGIKPSVTIYGIMLHGYGKKGALSEMHDL 492

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ +  +P+   F ++I      + I E   +F K+K  G  PNV+TY TLI+ LC+
Sbjct: 493 LNLMVANGISPNHRIFNTVICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCK 552

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+  F +M N     GV   PN V + +++ GLC     +K +ELFL+M ++ I
Sbjct: 553 LGRVDDAVLQFNQMINE----GVT--PNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQGI 606

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+V +N+++   C      EA  L+  M+  G++PDV+++N ++D  C   +MDEA +
Sbjct: 607 RPDIVFFNTVLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVK 666

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M+  G+ PN  +++TL+ G+C  GR+++A  LF  M   G    V +Y
Sbjct: 667 LLDGMVSAGLKPNIVSYNTLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETY 718



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 157/297 (52%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +FD M+  +   P +T + ++     K      +  L   + + G+ P+   +N 
Sbjct: 452 NEARSLFDSMIR-KGIKPSVTIYGIMLHGYGKKGALSEMHDLLNLMVANGISPNHRIFNT 510

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  + K   +     +  ++ +   +P+ V + +LI  LC   R+ +A   F ++   G
Sbjct: 511 VICAYAKRAMIDEVMHIFIKMKQQGLSPNVVTYGTLIDALCKLGRVDDAVLQFNQMINEG 570

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN + +++L+ GLC          LF EM N         +P+ V + T++  LCKEG
Sbjct: 571 VTPNNVVFNSLVYGLCTVDKWEKVEELFLEMLNQG------IRPDIVFFNTVLCNLCKEG 624

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A+ L   M    + PDV++YN+LI G C+A+  +EA  LL  M+  G++P++V++N
Sbjct: 625 RVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYN 684

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++   CK G++D A  L   M+ +GV P   T++T+++G   +GR + A+EL+V+M
Sbjct: 685 TLLHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNM 741



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 156/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P  +   +L++G L     ++ V  LF  + + G+ PD+  +N 
Sbjct: 557 DDAVLQFNQMINEGVTPNNVVFNSLVYG-LCTVDKWEKVEELFLEMLNQGIRPDIVFFNT 615

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   CK GRV     ++  ++     PD +++ +LI G C  SR+ EA  L   + + G
Sbjct: 616 VLCNLCKEGRVMEARRLIDSMVCMGLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAG 675

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN+++Y+TL++G C+ G    A  LF EM     + GV   P   TY TI++GL + G
Sbjct: 676 LKPNIVSYNTLLHGYCKAGRIDNAYCLFREML----RKGVT--PGVETYNTILNGLFRSG 729

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A+EL++ M        + TY+ ++ GFC  N ++EA  +   +    +Q D++TFN
Sbjct: 730 RFSEARELYVNMIKSRKLWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDIITFN 789

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D L K G+ ++A  L   +   G+ P+  T+  + +     G +     LF  ME  
Sbjct: 790 IMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKS 849

Query: 388 G 388
           G
Sbjct: 850 G 850



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 129/292 (44%), Gaps = 7/292 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+ M    P + S+N L          D  + L   + S GL P++ +YN L
Sbjct: 628 EARRLIDSMVCM-GLKPDVISYNTLIDGHCFASRMDEAVKLLDGMVSAGLKPNIVSYNTL 686

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +CK GR+ + + +   +LR   TP    + +++ GL    R  EA  L+  +     
Sbjct: 687 LHGYCKAGRIDNAYCLFREMLRKGVTPGVETYNTILNGLFRSGRFSEARELYVNMIKSRK 746

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ TYS +++G C+      A  +F+ + + + +  ++      T+  +IDGL K G 
Sbjct: 747 LWSICTYSIILDGFCKNNCFDEAFKIFQSLCSMDLQLDII------TFNIMIDGLFKGGR 800

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A +LF  +    + P VVTY  +           E +CL   M   G  P+    N 
Sbjct: 801 KEDAMDLFAAIPANGLVPSVVTYRLIAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNA 860

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++ +L   G++  A   L  +  +  +   ST S L+  F       HAK L
Sbjct: 861 LIRKLLDRGEIPRAGAYLSKLDEKNFSLEASTTSMLISLFSREEYQQHAKSL 912



 Score = 43.5 bits (101), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 64/150 (42%), Gaps = 1/150 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF IF  + +M      +T FN++   L K    +  + LF  + + GL P + TY +
Sbjct: 767 DEAFKIFQSLCSMDLQLDIIT-FNIMIDGLFKGGRKEDAMDLFAAIPANGLVPSVVTYRL 825

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +     + G +     +   + +S   P++    +LI+ L     I  A A  +KL    
Sbjct: 826 IAENLIEEGSLEELDCLFSVMEKSGTAPNSHMLNALIRKLLDRGEIPRAGAYLSKLDEKN 885

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEE 237
                 T S LI+   R  +   A +L E+
Sbjct: 886 FSLEASTTSMLISLFSREEYQQHAKSLPEK 915


>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
 gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  198 bits (504), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 110/341 (32%), Positives = 182/341 (53%), Gaps = 30/341 (8%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           I  ++A   F  M++M P P          G +AK K Y TV+SL  +++  G+  + YT
Sbjct: 65  IGIDDAMASFYRMIHMNPRPS-FVELGKFLGSIAKKKQYSTVVSLCNQMDLFGVAHNDYT 123

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            NILIN  C++  +     VL ++ +    PD+V FT+LI GLC E RI EA  LF ++ 
Sbjct: 124 LNILINSLCRLSHIHFAVSVLSKMFKLGIQPDSVTFTTLINGLCNEGRIKEAVELFNEMA 183

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFE-------------------------EMA 239
                PN +T++ L++ LC+ G    A  +FE                         EM 
Sbjct: 184 GRDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNALMNGYCLRLEMN 243

Query: 240 NGNGKFGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           + +  F ++    C P+  +Y+ +I+G CK   +D+AK L  QM +K + P+ VTYN+L+
Sbjct: 244 DASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLM 303

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            G C+A+   EA  L  +M   G+ P++ T+++++D LCK+G ++EA +LL  M  R + 
Sbjct: 304 QGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLE 363

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P+   ++ L+ G  + G++  AKELF  + + G + +V +Y
Sbjct: 364 PDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTY 404



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 151/283 (53%), Gaps = 13/283 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ M   R + P   +F +L   L K         +F+ +   G+ P++YTYN L
Sbjct: 174 EAVELFNEMAG-RDAMPNTVTFTILVDVLCKKGMVSEARCVFETMTEKGVEPNIYTYNAL 232

Query: 149 INCFC---KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +N +C   +M   S  F ++  + + C  P   +++ LI G C   RI EA AL T++  
Sbjct: 233 MNGYCLRLEMNDASKVFEIM--VGKGC-APSVHSYSILINGYCKSRRIDEAKALLTQMSE 289

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
               PN +TY+TL+ GLC     + A  LF++M +     G++  PN  TY+ ++DGLCK
Sbjct: 290 KELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSS----GML--PNLRTYSILLDGLCK 343

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +++A +L   M+++ + PD+V YN LI G   A     A  L  ++   G++P V T
Sbjct: 344 HGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRT 403

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +N+++  L K G  DEA +L   M   G  P++ +++ ++ GF
Sbjct: 404 YNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYNVIIQGF 446



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 144/279 (51%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA C+F+ M   +   P + ++N L          +    +F+ +   G  P +++Y+I
Sbjct: 208 SEARCVFETMTE-KGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSI 266

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  R+     +L ++      P+ V + +L++GLC  S ++EA  LF K+ + G
Sbjct: 267 LINGYCKSRRIDEAKALLTQMSEKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSG 326

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ TYS L++GLC+ GH   AL L   M           +P+ V Y  +I G+   G
Sbjct: 327 MLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERK------LEPDIVLYNILIQGMFIAG 380

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ AKELF ++    I P V TYN +I G       +EA  L  +M D G  PD  ++N
Sbjct: 381 KLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLFRKMEDDGFLPDSCSYN 440

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           VI+    +N     A +L++ M+ R  + ++STF  L+D
Sbjct: 441 VIIQGFLQNQDPSTAIQLIDEMVGRRFSADSSTFKMLLD 479


>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g16710, mitochondrial; Flags: Precursor
 gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 507

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 112/309 (36%), Positives = 165/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  +F  M++ RP P  +  F  L   +AK   YD V+SLF+++   G+ P L T NI
Sbjct: 65  NDALDLFTRMVHSRPLPS-IIDFTRLLSVIAKMNRYDVVISLFEQMQILGIPPLLCTCNI 123

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++C C   +       LG++++  F PD V FTSL+ G C  +RI +A ALF ++   G
Sbjct: 124 VMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIEDAIALFDQILGMG 183

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPNV+TY+TLI  LC+  H   A+ LF +M   NG      +PN VTY  ++ GLC+ G
Sbjct: 184 FKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGT-NGS-----RPNVVTYNALVTGLCEIG 237

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A  L   M  + I P+V+T+ +LI  F       EA  L   M+   V PDV T+ 
Sbjct: 238 RWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYG 297

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LC  G +DEA ++  LM   G  PN   ++TL+ GFC + RV    ++F  M   
Sbjct: 298 SLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQK 357

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 358 GVVANTITY 366



 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD +L M    P + ++  L  CL K +H +  + LF ++ + G  P++ TYN L
Sbjct: 171 DAIALFDQILGM-GFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNAL 229

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C++GR      +L  +++    P+ + FT+LI       ++MEA  L+  +     
Sbjct: 230 VTGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSV 289

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V TY +LINGLC  G    A  +F  M   NG     C PN V YTT+I G CK   
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMER-NG-----CYPNEVIYTTLIHGFCKSKR 343

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   ++F +M  K +  + +TY  LI G+C     + A  +  +M  +   PD+ T+NV
Sbjct: 344 VEDGMKIFYEMSQKGVVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAPPDIRTYNV 403

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC NGK+++A  + E M  R ++ N  T++ ++ G C  G+V  A +LF S+ S G
Sbjct: 404 LLDGLCCNGKVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKG 463

Query: 389 CKHTVFSY 396
            K  V +Y
Sbjct: 464 MKPNVITY 471



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 77/274 (28%), Positives = 131/274 (47%), Gaps = 8/274 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ + D M   R   P + +F  L     K         L+  +    ++PD++TY  
Sbjct: 241 DAAWLLRDMM--KRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMIQMSVYPDVFTYGS 298

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  G +     +   + R+   P+ V +T+LI G C   R+ +   +F ++   G
Sbjct: 299 LINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMKIFYEMSQKG 358

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N ITY+ LI G C  G   VA  +F +M++          P+  TY  ++DGLC  G
Sbjct: 359 VVANTITYTVLIQGYCLVGRPDVAQEVFNQMSSRRAP------PDIRTYNVLLDGLCCNG 412

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+KA  +F  M+ + ++ ++VTY  +I G C      +A  L   +  +G++P+V+T+ 
Sbjct: 413 KVEKALMIFEYMRKREMDINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYT 472

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            ++   C+ G + EA  L + M   G  PN S +
Sbjct: 473 TMISGFCRRGLIHEADSLFKKMKEDGFLPNESVY 506



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG      P+ A  +F+ M + R +PP + ++N+L   L      +  L +F+ +    +
Sbjct: 371 QGYCLVGRPDVAQEVFNQM-SSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREM 429

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             ++ TY I+I   CK+G+V   F +   +      P+ + +T++I G C    I EA +
Sbjct: 430 DINIVTYTIIIQGMCKLGKVEDAFDLFCSLFSKGMKPNVITYTTMISGFCRRGLIHEADS 489

Query: 199 LFTKLKAFGCKPNVITY 215
           LF K+K  G  PN   Y
Sbjct: 490 LFKKMKEDGFLPNESVY 506


>gi|449458524|ref|XP_004146997.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Cucumis sativus]
          Length = 481

 Score =  198 bits (504), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/409 (32%), Positives = 194/409 (47%), Gaps = 42/409 (10%)

Query: 25  SSSFPHTRKPKSSISKNEPSD--PTTTAKLKESLRLTVKDRA-SLEQFLKERCKSSGQGD 81
           S+SF     P  ++S   PS    T++      + L   DR  S +  L    ++   G+
Sbjct: 9   SASFKPNLSPLCTLSSPIPSSVPQTSSTNHPNPILLAFNDRGISFQHRLSSFLRNCKTGN 68

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           I  I   +AF  FD M+   P PP ++SFN L G LAK  HY  + SL+ ++   GL PD
Sbjct: 69  IDVI---QAFHFFDLMMRSHPIPP-ISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPD 124

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL---CAESRIMEAAA 198
           L+T NIL NC C + RVS G   +  ILR  + PD V + +LIKGL   C      EA  
Sbjct: 125 LFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKE 184

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------- 241
           +F ++KA G  PNVI+YS+L++G C  G    +  LF EM +                  
Sbjct: 185 IFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILC 244

Query: 242 -NGKFGVV--------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
             GK G +              C+ N ++YT +I+G CK   V++A  L+ +M      P
Sbjct: 245 KEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRP 304

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY++L+ G        +AN L   M   G+  D   + + +D LCKNG + EA  L 
Sbjct: 305 NVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELF 364

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
             +       +  ++S L+DG C  G+V  A E F  +   G +  V +
Sbjct: 365 NELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVT 413



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 150/302 (49%), Gaps = 17/302 (5%)

Query: 105 PPLTSFNLL----FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           P + ++N L    +G L K  H D    +F+ + + G+ P++ +Y+ L++ FC  G++  
Sbjct: 158 PDIVTYNTLIKGLYG-LCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEE 216

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME---AAALFTKLKAFGCKPNVITYST 217
              +   ++     P+ V F  LI  LC E +I +   A  LF  + + GC+ N I+Y+ 
Sbjct: 217 SKRLFNEMVDQGVQPNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTI 276

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LING C+      A+NL+ EM        V  +PN  TY+T++ GL + G V  A +LF 
Sbjct: 277 LINGYCKIWKVEEAMNLYNEMPQ------VGKRPNVKTYSTLLTGLLQTGKVGDANKLFG 330

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            MK   I+ D   Y   + G C      EA  L  E+     + D  +++ ++D LCK G
Sbjct: 331 VMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFESYSRLIDGLCKAG 390

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM---GCKHTVF 394
           K++ A    + +   G+ PN  T + ++ GFC   +V+ A  LF  ME M   GC   + 
Sbjct: 391 KVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDII 450

Query: 395 SY 396
           +Y
Sbjct: 451 TY 452



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 150/301 (49%), Gaps = 24/301 (7%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           PS  P TS          T H + +L  F   N  G+       + L NC      V   
Sbjct: 27  PSSVPQTS---------STNHPNPILLAF---NDRGISFQHRLSSFLRNCKTGNIDVIQA 74

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           F     ++RS   P   +F  L+ GL   +   +  +L+ K++  G  P++ T + L N 
Sbjct: 75  FHFFDLMMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLNILANC 134

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL---CKEGFVDKAKELFLQ 278
           LC          + E +A   G       P+ VTY T+I GL   CK G  D+AKE+F +
Sbjct: 135 LCNLNR------VSEGLAAMTGILRRGYIPDIVTYNTLIKGLYGLCKVGHEDEAKEIFEE 188

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           MK + + P+V++Y+SL+HGFC A    E+  L  EM+DQGVQP++V FNV++D LCK GK
Sbjct: 189 MKAQGMIPNVISYSSLVHGFCCAGKLEESKRLFNEMVDQGVQPNLVQFNVLIDILCKEGK 248

Query: 339 MDE---ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           + +   A +L   M  +G   N  +++ L++G+C   +V  A  L+  M  +G +  V +
Sbjct: 249 IGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNVKT 308

Query: 396 Y 396
           Y
Sbjct: 309 Y 309



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/254 (31%), Positives = 130/254 (51%), Gaps = 12/254 (4%)

Query: 105 PPLTSFNLLFGCL---AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P L  FN+L   L    K     +   LF  + S G   +  +Y ILIN +CK+ +V   
Sbjct: 231 PNLVQFNVLIDILCKEGKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEA 290

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +   + +    P+   +++L+ GL    ++ +A  LF  +KA G   +   Y   ++G
Sbjct: 291 MNLYNEMPQVGKRPNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIFLDG 350

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+ G    A+ LF E+ + N K       +  +Y+ +IDGLCK G V+ A E F Q+  
Sbjct: 351 LCKNGVLFEAMELFNELKSYNFKL------DFESYSRLIDGLCKAGKVEIAWEFFKQLSQ 404

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCL---LIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           + + P+VVT N +IHGFC     ++AN L   + +M + G  PD++T+N ++   C++ K
Sbjct: 405 EGLQPNVVTCNIMIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNK 464

Query: 339 MDEASRLLELMILR 352
           ++E   LL  M  R
Sbjct: 465 LEEVVNLLHKMFKR 478


>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
 gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
          Length = 1116

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 103/289 (35%), Positives = 163/289 (56%), Gaps = 9/289 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K+      + LF+ L   G  PD+ TYN LI+  CK G +     +
Sbjct: 214 PTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRL 273

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK--PNVITYSTLINGL 222
            G +      P+ V ++ LI GLC   RI EA  L  ++    C   PN+ITY++ ++GL
Sbjct: 274 HGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGL 333

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+   T  A  L   + +G+ +      P+TVT++T+IDGLCK G +D+A  +F  M   
Sbjct: 334 CKQSMTAEACELMRSLRDGSLRV----SPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAG 389

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+V+TYN+L++G C A+    A+ ++  M+D+GV PDV+T++V++D  CK  ++DEA
Sbjct: 390 GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEA 449

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             LL  M  RG  PN  TF++++DG C + R   A ++F   + M  KH
Sbjct: 450 LELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMF---DDMALKH 495



 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 110/314 (35%), Positives = 165/314 (52%), Gaps = 10/314 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA    + M++    P  +T  +L++  L +    D  L L   L S G  PD  TYNI
Sbjct: 654 EEACQFLEEMVSSGCVPDSITYGSLVYA-LCRASRTDDALQLVSELKSFGWDPDTVTYNI 712

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K G+      VL  ++     PD V + +LI  LC    + EA  L   + +  
Sbjct: 713 LVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRV 772

Query: 208 ---CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
              C PNV+TYS LINGLC+ G    A  L +EM   +        PN +TY + +DGLC
Sbjct: 773 SRCCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDV----LPNIITYNSFLDGLC 828

Query: 265 KEGFVDKAKELFLQMKDKN--INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           K+  + +A EL   ++D +  ++PD VT+++LI G C     +EA  +  +M+  G  P+
Sbjct: 829 KQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPN 888

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVT+NV+M+ LCK  KM+ A  ++E M+ +GV P+  T+S L+D FC    V+ A EL  
Sbjct: 889 VVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLH 948

Query: 383 SMESMGCKHTVFSY 396
            M S GC   V ++
Sbjct: 949 GMASRGCTPNVVTF 962



 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 156/293 (53%), Gaps = 7/293 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           +  +N++   L +       L +F+  +   G+ P + TYN +IN  CK   +  G  + 
Sbjct: 180 VADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELF 239

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             ++     PD V + +LI  LC    + EA  L   + +  C PNV+TYS LINGLC+ 
Sbjct: 240 EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKV 299

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-- 283
           G    A  L +EM   +        PN +TY + +DGLCK+    +A EL   ++D +  
Sbjct: 300 GRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 355

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD VT+++LI G C     +EA  +  +M+  G  P+V+T+N +++ LCK  KM+ A 
Sbjct: 356 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 415

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++E M+ +GV P+  T+S L+D FC   RV+ A EL   M S GC   V ++
Sbjct: 416 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 468



 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 102/293 (34%), Positives = 161/293 (54%), Gaps = 14/293 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L   L K+   +  +++ + +   G  PD+ TYN LI+  CK G +     +
Sbjct: 705 PDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRL 764

Query: 165 LG----RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK--PNVITYSTL 218
            G    R+ R C  P+ V ++ LI GLC   RI EA  L  ++    C   PN+ITY++ 
Sbjct: 765 HGDMSSRVSRCC-VPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSF 823

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++GLC+      A  L   + +G+ +      P+TVT++T+IDGLCK G  D+A  +F  
Sbjct: 824 LDGLCKQSMMAEACELMRSLRDGSLRV----SPDTVTFSTLIDGLCKCGQTDEACNVFDD 879

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M      P+VVTYN L++G C  +    A+ ++  M+D+GV PDV+T++V++D  CK   
Sbjct: 880 MIAGGYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASH 939

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
           +DEA  LL  M  RG  PN  TF++++DG C   + + + E F   + M  KH
Sbjct: 940 VDEALELLHGMASRGCTPNVVTFNSIIDGLC---KSDQSGEAFQMFDDMTLKH 989



 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 107/329 (32%), Positives = 173/329 (52%), Gaps = 37/329 (11%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           ++R SP  +T F+ L   L K    D   S+F  + + G  P++ TYN L+N  CK  ++
Sbjct: 353 SLRVSPDTVT-FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 411

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                ++  ++    TPD + ++ L+   C  SR+ EA  L   + + GC PNV+T++++
Sbjct: 412 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 471

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+GLC++  +  A  +F++MA    K G+V  P+ +TY T+IDGL + G   +A+ L   
Sbjct: 472 IDGLCKSDRSGEAFQMFDDMAL---KHGLV--PDKITYCTLIDGLFRTGRAGQAEALLDA 526

Query: 279 MKDKN-------IN------------------------PDVVTYNSLIHGFCYANDWNEA 307
           M D +       IN                        PD VT+N LI G C A ++ +A
Sbjct: 527 MPDPDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQA 586

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           + L  EM+ + +QPDV+TF  ++D LCK G+++ A  +L+LM   GV PN  T++ L+ G
Sbjct: 587 SALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHG 646

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C +GR+  A +    M S GC     +Y
Sbjct: 647 LCKSGRIEEACQFLEEMVSSGCVPDSITY 675



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/313 (33%), Positives = 159/313 (50%), Gaps = 18/313 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CKS   G        EAF +FD M       P   ++  L   L +T       +L   +
Sbjct: 476 CKSDRSG--------EAFQMFDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAM 527

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
                 PD Y +N  IN   K+G VS    V  R+L     PD V F  LI G C     
Sbjct: 528 PD----PDTYAFNCCINGLSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNF 583

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            +A+ALF ++ A   +P+V+T+  LI+GLC+ G    A ++ + M N     GV   PN 
Sbjct: 584 EQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGN----LGV--PPNV 637

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY  ++ GLCK G +++A +   +M      PD +TY SL++  C A+  ++A  L+ E
Sbjct: 638 VTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 697

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           +   G  PD VT+N+++D L K+G+ ++A  +LE M+ +G +P+  T++TL+D  C  G 
Sbjct: 698 LKSFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGD 757

Query: 374 VNHAKELFVSMES 386
           +  A+ L   M S
Sbjct: 758 LEEARRLHGDMSS 770



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 151/283 (53%), Gaps = 13/283 (4%)

Query: 99   NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            ++R SP  +T F+ L   L K    D   ++F  + + G  P++ TYN+L+N  CK  ++
Sbjct: 847  SLRVSPDTVT-FSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKTDKM 905

Query: 159  SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                 ++  ++    TPD + ++ L+   C  S + EA  L   + + GC PNV+T++++
Sbjct: 906  ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSI 965

Query: 219  INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
            I+GLC++  +  A  +F++M   +G       P+ +TY T+IDGL + G+  +A+ L   
Sbjct: 966  IDGLCKSDQSGEAFQMFDDMTLKHG-----LAPDKITYCTLIDGLFRTGWAGQAEVLLDA 1020

Query: 279  MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
            M D    PD   +N  I+G     D + A   L  M++  + PD VTFN+++   CK G 
Sbjct: 1021 MPD----PDTYAFNCCINGLSKLGDVSRA---LHRMLELELVPDKVTFNILIAGACKAGN 1073

Query: 339  MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             ++AS L E M+ + + P+  TF  L+DG C  G+V    ++ 
Sbjct: 1074 FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEATWDIM 1116



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 153/324 (47%), Gaps = 38/324 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L     K    D  L L   + S G  P++ T+N +I+  CK  R    F +
Sbjct: 428 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQM 487

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK-----AFGC---------- 208
              + L+    PD + + +LI GL    R  +A AL   +      AF C          
Sbjct: 488 FDDMALKHGLVPDKITYCTLIDGLFRTGRAGQAEALLDAMPDPDTYAFNCCINGLSKLGD 547

Query: 209 ----------------KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
                            P+ +T++ LI G C+ G+   A  LFEEM   N       +P+
Sbjct: 548 VSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASALFEEMVAKN------LQPD 601

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            +T+  +IDGLCK G V+ A+++   M +  + P+VVTYN+L+HG C +    EA   L 
Sbjct: 602 VMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLE 661

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM+  G  PD +T+  ++  LC+  + D+A +L+  +   G +P+T T++ L+DG   +G
Sbjct: 662 EMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSG 721

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           +   A  +   M   G    V +Y
Sbjct: 722 QTEQAITVLEEMVGKGHHPDVVTY 745



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 102/374 (27%), Positives = 170/374 (45%), Gaps = 66/374 (17%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYT 144
             +A  + + M+  +   P + ++N L   L K    +    L   ++S       P++ T
Sbjct: 724  EQAITVLEEMVG-KGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVT 782

Query: 145  YNILINCFCKMGRVSHGFVVLGRILR-SC-FTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            Y++LIN  CK+GR+     ++  ++R SC   P+ + + S + GLC +S + EA  L   
Sbjct: 783  YSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMAEACELMRS 842

Query: 203  LK--AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK- 250
            L+  +    P+ +T+STLI+GLC+ G T  A N+F++M  G     VV         CK 
Sbjct: 843  LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMNGLCKT 902

Query: 251  -------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
                               P+ +TY+ ++D  CK   VD+A EL   M  +   P+VVT+
Sbjct: 903  DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTF 962

Query: 292  NSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVTFNVIMDEL----------------- 333
            NS+I G C ++   EA  +  +M +  G+ PD +T+  ++D L                 
Sbjct: 963  NSIIDGLCKSDQSGEAFQMFDDMTLKHGLAPDKITYCTLIDGLFRTGWAGQAEVLLDAMP 1022

Query: 334  ---------CKNG--KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
                     C NG  K+ + SR L  M+   + P+  TF+ L+ G C  G    A  LF 
Sbjct: 1023 DPDTYAFNCCINGLSKLGDVSRALHRMLELELVPDKVTFNILIAGACKAGNFEQASALFE 1082

Query: 383  SMESMGCKHTVFSY 396
             M +   +  V ++
Sbjct: 1083 EMVAKNLQPDVMTF 1096



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 96/183 (52%), Gaps = 8/183 (4%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PN  TYSTL+    + G  +       E   G  +       +   Y  ++  LC+ G
Sbjct: 142 CRPNHFTYSTLLRATYKAGGDV-------ERTLGFFRRIRSSSRSVADYNIVLQSLCRAG 194

Query: 268 FVDKAKELFL-QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
              +A E+F  +M    + P +VTYN++I+G C +N+      L  E++++G  PDVVT+
Sbjct: 195 ETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFEELVERGHHPDVVTY 254

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D LCK G ++EA RL   M  R   PN  T+S L++G C  GR++ A+EL   M  
Sbjct: 255 NTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTYSVLINGLCKVGRIDEARELIQEMTR 314

Query: 387 MGC 389
             C
Sbjct: 315 KSC 317



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/169 (27%), Positives = 70/169 (41%), Gaps = 35/169 (20%)

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-------------------- 302
           L K G   KA +LF         P+  TY++L+     A                     
Sbjct: 121 LVKSGSPAKAIDLFRSRLPPRCRPNHFTYSTLLRATYKAGGDVERTLGFFRRIRSSSRSV 180

Query: 303 -DWN-----------EANCLLI---EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            D+N            A  L I   EM   GV P +VT+N I++ LCK+ ++     L E
Sbjct: 181 ADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNELGAGMELFE 240

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++ RG +P+  T++TL+D  C  G +  A+ L   M S  C   V +Y
Sbjct: 241 ELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNVVTY 289


>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
 gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
          Length = 436

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 164/296 (55%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R +PP   ++  +   L KTK  D  L+  + + + G+ PD + YN +++  C+  +V  
Sbjct: 108 RYAPPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEE 167

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             ++  ++++    P+ V + +LI GLC   RI  A  LF ++   G  P  ++Y+TLI+
Sbjct: 168 ARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNTLID 227

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+    + A ++F++M   N      C PN VTYTT+IDGL K G V  A E+   M 
Sbjct: 228 GFCKKKDLVAAKDVFDKMVRSN------CVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV 281

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K + P+V TY+ LI GFC     +EA+ LL +M+ QG+ P VVT+N++++ LC+  K++
Sbjct: 282 KKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLE 341

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A +L   M  R  +P   T++TL+   C   +++ A  L+  M + GC     +Y
Sbjct: 342 DAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITY 397



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 152/289 (52%), Gaps = 7/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           + + +L  CL K  ++D    L   +           Y+ +IN  CK+ RV     ++ +
Sbjct: 46  SGYGILISCLCKVGNFDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEK 105

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + R    PDA+ +  +++ LC   RI +A A   ++   G KP+   Y+ +++GLC+   
Sbjct: 106 MARYA-PPDALTYGPIVERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEK 164

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LFE+M            PN VTY T+I+GLCK   ++ A ELF +M  K   P 
Sbjct: 165 VEEARLLFEKMVKQR------INPNVVTYNTLINGLCKAWRIETAYELFKEMAGKGYVPT 218

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            V+YN+LI GFC   D   A  +  +M+     P+VVT+  ++D L K+GK+  A+ +L+
Sbjct: 219 EVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLD 278

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+ +GV PN +T+S L+DGFC   RV+ A +L   M + G   TV +Y
Sbjct: 279 GMVKKGVTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTY 327



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P    +N +   L + +  +    LF+++    + P++ TYN LIN  CK  R+  
Sbjct: 143 RGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVTYNTLINGLCKAWRIET 202

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            + +   +    + P  V++ +LI G C +  ++ A  +F K+    C PNV+TY+TLI+
Sbjct: 203 AYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLID 262

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GL ++G    A     E+ +G  K GV   PN  TY+ +IDG CK   VD+A +L  QM 
Sbjct: 263 GLSKSGKVQAA----AEVLDGMVKKGVT--PNVATYSCLIDGFCKVRRVDEAHKLLEQMV 316

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + I P VVTYN L++  C A+   +A  L   M  +   P VVT+N ++  LC + ++D
Sbjct: 317 TQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLD 376

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            A RL   MI +G  P+  T+ TL  G    G+V+ A+EL   M+
Sbjct: 377 GAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMK 421



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/269 (33%), Positives = 137/269 (50%), Gaps = 7/269 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M+  R +P  +T +N L   L K    +T   LFK +   G  P   +YN 
Sbjct: 166 EEARLLFEKMVKQRINPNVVT-YNTLINGLCKAWRIETAYELFKEMAGKGYVPTEVSYNT 224

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK   +     V  +++RS   P+ V +T+LI GL    ++  AA +   +   G
Sbjct: 225 LIDGFCKKKDLVAAKDVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKG 284

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV TYS LI+G C+      A  L E+M       G+   P  VTY  +++ LC+  
Sbjct: 285 VTPNVATYSCLIDGFCKVRRVDEAHKLLEQMVTQ----GIA--PTVVTYNILLNSLCRAD 338

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A +LF  M  +  +P VVTYN+L+   C+    + A+ L  EM+ +G  PD +T++
Sbjct: 339 KLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYD 398

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNP 356
            +   L + GK+ EA  L+E M L   NP
Sbjct: 399 TLAWGLTRAGKVHEAQELMEKMKLTKRNP 427



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 75/181 (41%), Gaps = 36/181 (19%)

Query: 251 PNTVTYTTIIDG-----------------------------------LCKEGFVDKAKEL 275
           P   T+ T+ DG                                   LCK G  D+A +L
Sbjct: 8   PGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGNFDEAYKL 67

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
              M+ K      + Y+++I+  C  N   EA   LIE M +   PD +T+  I++ LCK
Sbjct: 68  LHTMRLKRFKRKAIAYSTIINWLCKLNRVEEAR-ELIEKMARYAPPDALTYGPIVERLCK 126

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
             ++D+A   +E M  RG+ P+   ++ ++ G C   +V  A+ LF  M        V +
Sbjct: 127 TKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRINPNVVT 186

Query: 396 Y 396
           Y
Sbjct: 187 Y 187



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 49/106 (46%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  + + P   T+N++  GF  A    +   +   M++ G       + +++  LCK G 
Sbjct: 1   MALRRVIPGAATFNTVADGFAKAGRLEQVKEVYQGMVEAGYTLRASGYGILISCLCKVGN 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            DEA +LL  M L+        +ST+++  C   RV  A+EL   M
Sbjct: 61  FDEAYKLLHTMRLKRFKRKAIAYSTIINWLCKLNRVEEARELIEKM 106


>gi|41152687|dbj|BAD08212.1| hypothetical protein [Oryza sativa Indica Group]
 gi|46091163|dbj|BAD13710.1| PPR protein [Oryza sativa Indica Group]
 gi|67906116|dbj|BAE00068.1| PPR protein [Oryza sativa Indica Group]
 gi|114437073|gb|ABI74690.1| fertility restorer [Oryza sativa Indica Group]
          Length = 683

 Score =  198 bits (503), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 114/348 (32%), Positives = 176/348 (50%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++ +  ++ ML+ R SP  +T +N +   L K +  D  + +   +  +G+
Sbjct: 101 EGDL-----DKTYSTYNEMLDQRISPNVVT-YNSIIAALCKAQTVDKAMEVLTTMVKSGV 154

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD  TYN +++ FC  G+     V L ++      PD V + SL+  LC   R  EA  
Sbjct: 155 MPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARK 214

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGV-VC-- 249
           +F  +   G KP + TY TL+ G    G  +    L + M   NG       F + VC  
Sbjct: 215 IFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR-NGIHPNHYVFSILVCAY 273

Query: 250 ---------------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                 PN VTY  +I  LCK G V+ A   F QM D+ ++P  
Sbjct: 274 AKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGN 333

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           + YNSLIHG C  N W  A  L++EM+D+G+  + + FN I+D  CK G++ E+ +L +L
Sbjct: 334 IVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDL 393

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  GV P+  T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 394 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 441



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 160/353 (45%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+     P     F++L    AK +  +  + +F ++   GL
Sbjct: 236 QGYATKGALVEMHGLLDLMVRNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 294

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--------- 189
            P+  TY  +I   CK GRV    +   +++    +P  + + SLI GLC          
Sbjct: 295 NPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEE 354

Query: 190 --------------------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R++E+  LF  +   G KP++ITYSTLI+G C
Sbjct: 355 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYC 414

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L   M +      V  KP+ VTY+T+I+G CK   +  A  LF +M+   
Sbjct: 415 LAGKMDEATKLLASMVS------VGMKPDCVTYSTLINGYCKISRMKDALVLFREMESSG 468

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD++TYN ++ G         A  L + +   G Q ++ T+N+I+  LCKN   D+A 
Sbjct: 469 VSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELSTYNIILHGLCKNKLTDDAL 528

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+ + + L  +     TF+ ++D     GR + AK+LFV+  S G     ++Y
Sbjct: 529 RMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 581



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 211 EARKIFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 269

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + K  +V    +V  ++ +    P+AV + ++I  LC   R+ +A   F ++   G 
Sbjct: 270 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGL 329

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  I Y++LI+GLC       A  L  EM +       +C  NT+ + +IID  CKEG 
Sbjct: 330 SPGNIVYNSLIHGLCTCNKWERAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGR 383

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TY++LI G+C A   +EA  LL  M+  G++PD VT++ 
Sbjct: 384 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYST 443

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  CK  +M +A  L   M   GV+P+  T++ ++ G   T R   AKEL+V +   G
Sbjct: 444 LINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSG 503

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 504 RQLELSTY 511



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/236 (38%), Positives = 125/236 (52%), Gaps = 11/236 (4%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLING 221
           V   +LR    PD  ++  L+ GLC E+R  EA  L   +   G  C P+V++YST+ING
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             + G      + + EM +          PN VTY +II  LCK   VDKA E+   M  
Sbjct: 98  FFKEGDLDKTYSTYNEMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 151

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD +TYNS++HGFC +    EA   L +M   GV+PDVVT+N +MD LCKNG+  E
Sbjct: 152 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE 211

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           A ++ + M  RG+ P  +T+ TL+ G+   G +     L   M   G    H VFS
Sbjct: 212 ARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 267



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 76/202 (37%), Positives = 116/202 (57%), Gaps = 5/202 (2%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           +A  +F +L   G  P+V +Y+ L+NGLC    +  AL L   MA+  G     C P+ V
Sbjct: 35  DARHVFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGD----CPPDVV 89

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           +Y+T+I+G  KEG +DK    + +M D+ I+P+VVTYNS+I   C A   ++A  +L  M
Sbjct: 90  SYSTVINGFFKEGDLDKTYSTYNEMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTM 149

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +  GV PD +T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR 
Sbjct: 150 VKSGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRC 209

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+++F SM   G K  + +Y
Sbjct: 210 TEARKIFDSMTKRGLKPEITTY 231



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 128/279 (45%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TY+ 
Sbjct: 386 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEATKLLASMVSVGMKPDCVTYST 443

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+  +   G
Sbjct: 444 LINGYCKISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSG 503

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + K          T+  +ID L K G
Sbjct: 504 RQLELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKL------EARTFNIMIDALLKVG 557

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF+      + P+  TY  +           E + L + M D G   D    N
Sbjct: 558 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 617

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ EL + G++  A   L ++  +  +   ST S  +D
Sbjct: 618 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 656



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 117/249 (46%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   G+ PD+ TY+ LI+ +C  G++     +L  ++     PD V +++LI G C
Sbjct: 390 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYSTLINGYC 449

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  +     +  + 
Sbjct: 450 KISRMKDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITKSGRQLELS 509

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  I+ GLCK    D A  +F  +   ++  +  T+N +I         +EA 
Sbjct: 510 ------TYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAK 563

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L +     G+ P+  T+ ++ + +   G ++E  +L   M   G   ++   + ++   
Sbjct: 564 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 623

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 624 LQRGEITRA 632


>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
 gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
          Length = 603

 Score =  197 bits (502), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 109/309 (35%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           N+A  +F  +L+   +P  +   +L+ G C+A +  +D    LF  +N  G  P   TYN
Sbjct: 27  NDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYN 84

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ++I+  CK G +     ++ +++     PD V + +++ GLC   R+ EA  LF +++  
Sbjct: 85  VIIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSGRVEEALLLFNEMERL 144

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC PN  +++T+I GLC+      A  +F EM   +        P++ +Y  +IDGL K 
Sbjct: 145 GCTPNRRSHNTIILGLCQQSKIDQACQVFHEMEARD------IPPDSWSYGILIDGLAKA 198

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++A +LF +M D  I P  VTYN +IHG C A   +EA  L   M  +G +P   TF
Sbjct: 199 GKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTF 258

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D  CK GKMDEA RLL+ M   G  P+  T+STL+ G C   RV+ A+ L   M  
Sbjct: 259 NILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVK 318

Query: 387 MGCKHTVFS 395
             CK TV +
Sbjct: 319 RQCKPTVVT 327



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 164/309 (53%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M  +  +P   +   ++ G   ++K  D    +F  + +  + PD ++Y I
Sbjct: 132 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSK-IDQACQVFHEMEARDIPPDSWSYGI 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K G+++  + +  R+L S  TP AV +  +I G+C    + EA  LF  +++ G
Sbjct: 191 LIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYTLDEALELFKSMRSKG 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+  T++ LI+  C+ G    A  L + M + +G       P+ VTY+T+I GLC   
Sbjct: 251 CRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTD-DGHV-----PDVVTYSTLISGLCSIA 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A+ L   M  +   P VVT N+LIHG C A    EA  +L  M+  G  PDVVT+N
Sbjct: 305 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTYN 364

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C+ G+ + A  LL  M+ RG+ PN  T++ L+ G C   R+  A  +F  M+S 
Sbjct: 365 TLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSS 424

Query: 388 GCKHTVFSY 396
           GC   +F+Y
Sbjct: 425 GCAPNLFTY 433



 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/295 (33%), Positives = 161/295 (54%), Gaps = 9/295 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA+ +F  ML+   +P  +T   ++ G CLA T   D  L LFK + S G  P  +T+N
Sbjct: 202 NEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAYT--LDEALELFKSMRSKGCRPSRFTFN 259

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI+  CK G++   F +L R+      PD V +++LI GLC+ +R+ +A  L   +   
Sbjct: 260 ILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKR 319

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            CKP V+T +TLI+GLC+ G    A  + + M + +G+      P+ VTY T++ G C+ 
Sbjct: 320 QCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVS-SGQ-----SPDVVTYNTLVHGHCRA 373

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G  ++A+EL   M  + + P+VVTY +L+ G C AN   EA  +  +M   G  P++ T+
Sbjct: 374 GQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTY 433

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             ++   C  G++D   +L   M+  G++P+   + TL    C +GR   A E+ 
Sbjct: 434 TALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 488



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/264 (33%), Positives = 152/264 (57%), Gaps = 6/264 (2%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +N   + PD ++Y ILI+   K G+++    +  ++L S  TP  VA+TSLI GLC  + 
Sbjct: 1   MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKLLHSGVTPSTVAYTSLIHGLCMANS 60

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
             +A  LF  +   GC P+ +TY+ +I+  C+ G    A +L ++M   +G       P+
Sbjct: 61  FDDARELFADMNRRGCPPSPVTYNVIIDASCKRGMLEEACDLIKKMIE-DGHV-----PD 114

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            VTY T++DGLCK G V++A  LF +M+     P+  ++N++I G C  +  ++A  +  
Sbjct: 115 VVTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFH 174

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM  + + PD  ++ +++D L K GK++EA +L   M+  G+ P+  T++ ++ G CL  
Sbjct: 175 EMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSAVTYNVVIHGMCLAY 234

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
            ++ A ELF SM S GC+ + F++
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTF 258



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 109/261 (41%), Gaps = 12/261 (4%)

Query: 63  RASLEQFLKERCKSSG-------QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG 115
           R  LE  +K +CK +         G   A    EA  + D M++   SP  +T +N L  
Sbjct: 310 RHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVT-YNTLVH 368

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
              +    +    L   + + GL P++ TY  L++  CK  R+     V  ++  S   P
Sbjct: 369 GHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAP 428

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           +   +T+LI G C+  ++     LF ++   G  P+ + Y TL   LC++G +  AL + 
Sbjct: 429 NLFTYTALILGFCSAGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 488

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            E   G          + V Y   +DGL   G ++ A      M      P      SL+
Sbjct: 489 RE---GRESLRSEAWGDEV-YRFAVDGLLDAGKMEMALGFVRDMVRGGQLPAPERCASLV 544

Query: 296 HGFCYANDWNEANCLLIEMMD 316
            G C +    EA  +L E+MD
Sbjct: 545 AGLCKSGQGGEARAVLEEIMD 565


>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
           EFFECT EMBRYO ARREST 40; Flags: Precursor
 gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
 gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
 gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 754

 Score =  197 bits (502), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 166/292 (56%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN L   L K  H    + +   +   G  PD+YTYN +I+  CK+G V     V
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++    +P+ V + +LI  LC E+++ EA  L   L + G  P+V T+++LI GLC 
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T +  VA+ LFEEM +        C+P+  TY  +ID LC +G +D+A  +  QM+    
Sbjct: 413 TRNHRVAMELFEEMRSKG------CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              V+TYN+LI GFC AN   EA  +  EM   GV  + VT+N ++D LCK+ ++++A++
Sbjct: 467 ARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQ 526

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ MI+ G  P+  T+++L+  FC  G +  A ++  +M S GC+  + +Y
Sbjct: 527 LMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 159/328 (48%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY------------------- 145
           P +++FN+L   L +       + + + + S GL PD  T+                   
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRI 246

Query: 146 ----------------NILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLC 188
                           N++++ FCK GRV      +  +  +  F PD   F +L+ GLC
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               +  A  +   +   G  P+V TY+++I+GLC+ G    A+ + ++M   +      
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRD------ 360

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C PNTVTY T+I  LCKE  V++A EL   +  K I PDV T+NSLI G C   +   A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L  EM  +G +PD  T+N+++D LC  GK+DEA  +L+ M L G   +  T++TL+DGF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C   +   A+E+F  ME  G      +Y
Sbjct: 481 CKANKTREAEEIFDEMEVHGVSRNSVTY 508



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 163/309 (52%), Gaps = 5/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   + D+M++     P    +N +   L        V     +++  G+ PD+ T+N+
Sbjct: 135 DEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C+  ++    ++L  +      PD   FT++++G   E  +  A  +  ++  FG
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C  + ++ + +++G C+ G    ALN  +EM+N +G F     P+  T+ T+++GLCK G
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF-----PDQYTFNTLVNGLCKAG 309

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A E+   M  +  +PDV TYNS+I G C   +  EA  +L +M+ +   P+ VT+N
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYN 369

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCK  +++EA+ L  ++  +G+ P+  TF++L+ G CLT     A ELF  M S 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429

Query: 388 GCKHTVFSY 396
           GC+   F+Y
Sbjct: 430 GCEPDEFTY 438



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 154/298 (51%), Gaps = 11/298 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+  R   P   ++N L   L K    +    L + L S G+ PD+ T+N L
Sbjct: 348 EAVEVLDQMIT-RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406

Query: 149 INCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I   C + R     + L   +RS  C  PD   +  LI  LC++ ++ EA  +  +++  
Sbjct: 407 IQGLC-LTRNHRVAMELFEEMRSKGC-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC  +VITY+TLI+G C+   T  A  +F+EM       GV    N+VTY T+IDGLCK 
Sbjct: 465 GCARSVITYNTLIDGFCKANKTREAEEIFDEME----VHGV--SRNSVTYNTLIDGLCKS 518

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V+ A +L  QM  +   PD  TYNSL+  FC   D  +A  ++  M   G +PD+VT+
Sbjct: 519 RRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             ++  LCK G+++ AS+LL  + ++G+N     ++ ++ G     +   A  LF  M
Sbjct: 579 GTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREM 636



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 79/286 (27%), Positives = 139/286 (48%), Gaps = 8/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  T+++   + LF+ + S G  PD +TYN+LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  S      + + +LI G C  ++  EA  +F +++  G   N +TY+TLI+GLC+
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L ++M    G+     KP+  TY +++   C+ G + KA ++   M     
Sbjct: 518 SRRVEDAAQLMDQMIM-EGQ-----KPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY +LI G C A     A+ LL  +  +G+      +N ++  L +  K  EA  
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 345 LLELMILRG-VNPNTSTFSTLMDGFC-LTGRVNHAKELFVSMESMG 388
           L   M+ +    P+  ++  +  G C   G +  A +  V +   G
Sbjct: 632 LFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 96/211 (45%), Gaps = 7/211 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M     S   +T +N L   L K++  +    L  ++   G  PD YTYN L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVT-YNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSL 546

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  FC+ G +     ++  +  +   PD V + +LI GLC   R+  A+ L   ++  G 
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
                 Y+ +I GL R   T  A+NLF EM   N        P+ V+Y  +  GLC  G 
Sbjct: 607 NLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE-----APPDAVSYRIVFRGLCNGGG 661

Query: 269 -VDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            + +A +  +++ +K   P+  +   L  G 
Sbjct: 662 PIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692


>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
 gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
          Length = 500

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 162/294 (55%), Gaps = 10/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L             + + +  L P++ TY +LI+  CK GRV     +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ + C  P AV + SLI GLC   R  EA  L  ++   GC P++ TY+TLI G C+
Sbjct: 104 LSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDK 282
           +  +  AL +FE++ A G        +P+ VTY+ +IDGLCKEG + +A +LF +M K  
Sbjct: 163 SKKSDDALRVFEQLVARGF-------RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           +  P+ VTYNSLI GFC     +EA  LL  M + G  PDVVT+  +M+  CK  ++D+A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             LL  M  +G+ P+  TF++LMDG C   R++ A  +   M    C  TV++Y
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTY 329



 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 169/309 (54%), Gaps = 9/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA    + M N R   P + ++ +L   L K    D  ++L  ++    + P   TYN 
Sbjct: 63  HEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYNS 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  R S  + +L  ++ S   PD   +T+LI G C   +  +A  +F +L A G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+V+TYS LI+GLC+ G    A++LF  M          C PNTVTY ++I G C+ G
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSLISGFCRMG 235

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L  +M +   +PDVVTY +L++GFC     ++A  LL +M  +G+ PDVVTF 
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFT 295

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +MD LC+  ++ +A  +L  M  +  +P   T++T++DG+C   ++  A++    +E M
Sbjct: 296 SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEM 353

Query: 388 GCKHTVFSY 396
            C   V S+
Sbjct: 354 DCPPNVVSF 362



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 164/323 (50%), Gaps = 33/323 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K +       L + +  +G  PD++TY  LI  FCK  +      V
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
             +++   F PD V ++ LI GLC E R+ EA  LF ++ K+  C PN +TY++LI+G C
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV---------CK--------------------PNTV 254
           R G    A+NL E MA       VV         CK                    P+ V
Sbjct: 233 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVV 292

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+T+++DGLC+E  +  A  +  +M+ K+ +P V TYN+++ G+C AN   EA   ++E 
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEE 352

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           MD    P+VV+FN+++  LCK  +  EA  L+E    R  NP+   ++T++DG C   +V
Sbjct: 353 MD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKV 410

Query: 375 NHAKELFVSM-ESMGCKHTVFSY 396
           + A  ++  M E  GC     +Y
Sbjct: 411 DEACRVYRKMLEEPGCLPNSITY 433



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 15/302 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+      P   ++N L     +    D  ++L +R+  TG  PD+ TY  L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N FCK+ R+   + +L ++ R   TPD V FTSL+ GLC E+R+ +A  +  +++   C
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 209 KPNVITYSTLINGLCRTGHTIVALN-LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            P V TY+T+++G CR      A   + EEM          C PN V++  +I GLCK  
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKVN 373

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTF 326
              +A EL  + + +  NPDVV Y ++I G C     +EA  +  +M+++ G  P+ +T+
Sbjct: 374 RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITY 433

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++  LC  G +D A   +E    +G  PN  T++ L+D F    R   A+EL   M  
Sbjct: 434 STLVTGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQ 489

Query: 387 MG 388
            G
Sbjct: 490 RG 491



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D  TY  LI   CK+ R+    + LG+++   F PD   +T++I  LC E+R+ EA    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++      PNV+TY+ LI+GLC+ G    A+ L  +M          C P  VTY ++I
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-------CVPTAVTYNSLI 122

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLCK     +A +L  +M      PD+ TY +LI GFC +   ++A  +  +++ +G +
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKE 379
           PDVVT++ ++D LCK G++ EA  L   MI  G   PNT T+++L+ GFC  G+++ A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M   G    V +Y
Sbjct: 243 LLERMAETGSSPDVVTY 259



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 109/225 (48%), Gaps = 43/225 (19%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVAL----------------------------------- 232
           C  + +TY++LI GLC+      AL                                   
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
              EEMAN N        PN VTYT +IDGLCK G VD+A  L  +M+ K + P  VTYN
Sbjct: 67  KFLEEMANRN------LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYN 119

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI G C A   +EA  LL EM+  G  PD+ T+  ++   CK+ K D+A R+ E ++ R
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
           G  P+  T+S L+DG C  GR+  A +LF  M +S  C     +Y
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224


>gi|242047602|ref|XP_002461547.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
 gi|241924924|gb|EER98068.1| hypothetical protein SORBIDRAFT_02g004530 [Sorghum bicolor]
          Length = 696

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/343 (35%), Positives = 181/343 (52%), Gaps = 22/343 (6%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
            LEQF+ E C  SG      + P +A  +FD +L  R  P  + + N L   +A+     
Sbjct: 64  ELEQFIGE-CYRSGD-----LGPEDALDLFDELLQ-RARPGSIYALNQLLTTVARAPVSS 116

Query: 125 TV-------LSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           +V       +S+F R+   G   + PD+ T+ ILI+C C  G ++ GF  LG+I+++   
Sbjct: 117 SVRDGPALAVSMFNRMARAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLR 176

Query: 175 PDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
             AV FT L++ LCAE R  +A  +   ++   GC P+V +Y+TL+ GLC       A  
Sbjct: 177 AQAVTFTPLLRTLCAEKRTSDAMNIVLRRMPELGCTPDVFSYTTLLKGLCAEKKCEEAAE 236

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   MA      G  C PN V+YTT+I G  KEG V KA  LF +M D  I P+VVT NS
Sbjct: 237 LIHMMAED----GDNCPPNVVSYTTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNS 292

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +I G C     ++A  +L +M+D+ + P+  T+N ++     +G+  EA R+L+ M   G
Sbjct: 293 VIDGLCKVQAMDKAEAVLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDG 352

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             PN  T+S L+D  C +G    A+E+F SM   G K    +Y
Sbjct: 353 QRPNVVTYSMLIDCLCKSGLHAEAREIFNSMIQSGQKPNASTY 395



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 175/348 (50%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+      +A+ +F  ML+    PP + + N +   L K +  D   ++ +++    +
Sbjct: 265 EGDV-----GKAYTLFCKMLD-HGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQMIDEHI 318

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN LI+ +   G+ +    +L  + R    P+ V ++ LI  LC      EA  
Sbjct: 319 MPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEARE 378

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG----------KFGVV 248
           +F  +   G KPN  TY +L++G    G+ +V +N  +++   NG          +    
Sbjct: 379 IFNSMIQSGQKPNASTYGSLLHGYATEGN-LVDMNNVKDLMVQNGMRPGRHVFNIEIYAY 437

Query: 249 CK--------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           CK                    P+ V YTT+IDGLCK G +D A   F QM D  ++PD+
Sbjct: 438 CKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPDI 497

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +T+N+LIHGF     W +A  L  EMMD+G+ P+V TFN ++D+L K GK+ EA +L +L
Sbjct: 498 ITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARKLFDL 557

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G  PN  +++T++ G+ + G V    +L   M  +G K T  ++
Sbjct: 558 MPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTF 605



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 157/318 (49%), Gaps = 27/318 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF+ M+     P   T  +LL G   +    D + ++   +   G+ P  + +NI 
Sbjct: 375 EAREIFNSMIQSGQKPNASTYGSLLHGYATEGNLVD-MNNVKDLMVQNGMRPGRHVFNIE 433

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +CK GR+    +   ++ +  F PD VA+T++I GLC   R+ +A + F ++   G 
Sbjct: 434 IYAYCKCGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDGL 493

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++IT++TLI+G    G    A  LF EM +          PN  T+ ++ID L KEG 
Sbjct: 494 SPDIITFNTLIHGFALHGKWEKAEELFYEMMDRG------IPPNVNTFNSMIDKLFKEGK 547

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA-------------------NC 309
           V +A++LF  M      P+VV+YN++IHG+  A +  E                    N 
Sbjct: 548 VTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNT 607

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL  M+  G++PDVVT   ++D  C++G++++   L   M+ +    +T T +  + G  
Sbjct: 608 LLDGMVSMGLKPDVVTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENIKLRGVT 667

Query: 370 LTGRVNHAKELFVSMESM 387
           +     H   + +S++++
Sbjct: 668 VKASY-HCSSVVISLKAL 684



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 144/303 (47%), Gaps = 41/303 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++N L      +  +   + + K ++  G  P++ TY++LI+C CK G  +    +
Sbjct: 320 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYSMLIDCLCKSGLHAEAREI 379

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAES--------------------------------- 191
              +++S   P+A  + SL+ G   E                                  
Sbjct: 380 FNSMIQSGQKPNASTYGSLLHGYATEGNLVDMNNVKDLMVQNGMRPGRHVFNIEIYAYCK 439

Query: 192 --RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             R+ EA+  F K++  G  P+++ Y+T+I+GLC+ G    A++ F +M +         
Sbjct: 440 CGRLDEASLTFNKMQQQGFMPDIVAYTTVIDGLCKIGRLDDAMSRFCQMIDDG------L 493

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+ +T+ T+I G    G  +KA+ELF +M D+ I P+V T+NS+I          EA  
Sbjct: 494 SPDIITFNTLIHGFALHGKWEKAEELFYEMMDRGIPPNVNTFNSMIDKLFKEGKVTEARK 553

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   M   G +P+VV++N ++      G++ E  +LL+ M+L G+ P   TF+TL+DG  
Sbjct: 554 LFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTFNTLLDGMV 613

Query: 370 LTG 372
             G
Sbjct: 614 SMG 616


>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
 gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
          Length = 500

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 107/294 (36%), Positives = 162/294 (55%), Gaps = 10/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L             + + +  L P++ TY +LI+  CK GRV     +
Sbjct: 44  PDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVAL 103

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ + C  P AV + SLI GLC   R  EA  L  ++   GC P++ TY+TLI G C+
Sbjct: 104 LSKMRKKC-VPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCK 162

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDK 282
           +  +  AL +FE++ A G        +P+ VTY+ +IDGLCKEG + +A +LF +M K  
Sbjct: 163 SKKSDDALRVFEQLVARGF-------RPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSG 215

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           +  P+ VTYNSLI GFC     +EA  LL  M + G  PDVVT+  +M+  CK  ++D+A
Sbjct: 216 SCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDA 275

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             LL  M  +G+ P+  TF++LMDG C   R++ A  +   M    C  TV++Y
Sbjct: 276 YDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTY 329



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 105/309 (33%), Positives = 168/309 (54%), Gaps = 9/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA    + M N R   P + ++ +L   L K    D  ++L  ++      P   TYN 
Sbjct: 63  HEARKFLEEMAN-RNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-CVPTAVTYNS 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  R S  + +L  ++ S   PD   +T+LI G C   +  +A  +F +L A G
Sbjct: 121 LISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARG 180

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+V+TYS LI+GLC+ G    A++LF  M          C PNTVTY ++I G C+ G
Sbjct: 181 FRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGS-----CMPNTVTYNSLISGFCRMG 235

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L  +M +   +PDVVTY +L++GFC     ++A  LL +M  +G+ PDVVTF 
Sbjct: 236 KMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFT 295

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +MD LC+  ++ +A  +L  M  +  +P   T++T++DG+C   ++  A++    +E M
Sbjct: 296 SLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFM--LEEM 353

Query: 388 GCKHTVFSY 396
            C   V S+
Sbjct: 354 DCPPNVVSF 362



 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 106/323 (32%), Positives = 164/323 (50%), Gaps = 33/323 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K +       L + +  +G  PD++TY  LI  FCK  +      V
Sbjct: 113 PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 172

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
             +++   F PD V ++ LI GLC E R+ EA  LF ++ K+  C PN +TY++LI+G C
Sbjct: 173 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 232

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV---------CK--------------------PNTV 254
           R G    A+NL E MA       VV         CK                    P+ V
Sbjct: 233 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPDVV 292

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+T+++DGLC+E  +  A  +  +M+ K+ +P V TYN+++ G+C AN   EA   ++E 
Sbjct: 293 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRANQLEEARKFMLEE 352

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           MD    P+VV+FN+++  LCK  +  EA  L+E    R  NP+   ++T++DG C   +V
Sbjct: 353 MD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKV 410

Query: 375 NHAKELFVSM-ESMGCKHTVFSY 396
           + A  ++  M E  GC     +Y
Sbjct: 411 DEACRVYRKMLEEPGCLPNSITY 433



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 15/302 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+      P   ++N L     +    D  ++L +R+  TG  PD+ TY  L
Sbjct: 203 EAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTL 262

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N FCK+ R+   + +L ++ R   TPD V FTSL+ GLC E+R+ +A  +  +++   C
Sbjct: 263 MNGFCKLARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSC 322

Query: 209 KPNVITYSTLINGLCRTGHTIVALN-LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            P V TY+T+++G CR      A   + EEM          C PN V++  +I GLCK  
Sbjct: 323 SPTVYTYNTILDGYCRANQLEEARKFMLEEMD---------CPPNVVSFNIMIRGLCKVN 373

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTF 326
              +A EL  + + +  NPDVV Y ++I G C     +EA  +  +M+++ G  P+ +T+
Sbjct: 374 RSSEAMELVEEARRRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITY 433

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + ++  LC  G +D A   +E    +G  PN  T++ L+D F    R   A+EL   M  
Sbjct: 434 STLITGLCNAGMLDRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQ 489

Query: 387 MG 388
            G
Sbjct: 490 RG 491



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D  TY  LI   CK+ R+    + LG+++   F PD   +T++I  LC E+R+ EA    
Sbjct: 10  DFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFL 69

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++      PNV+TY+ LI+GLC+ G    A+ L  +M          C P  VTY ++I
Sbjct: 70  EEMANRNLTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKK-------CVPTAVTYNSLI 122

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLCK     +A +L  +M      PD+ TY +LI GFC +   ++A  +  +++ +G +
Sbjct: 123 SGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVARGFR 182

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKE 379
           PDVVT++ ++D LCK G++ EA  L   MI  G   PNT T+++L+ GFC  G+++ A  
Sbjct: 183 PDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFCRMGKMDEAMN 242

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M   G    V +Y
Sbjct: 243 LLERMAETGSSPDVVTY 259



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 81/225 (36%), Positives = 109/225 (48%), Gaps = 43/225 (19%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVAL----------------------------------- 232
           C  + +TY++LI GLC+      AL                                   
Sbjct: 7   CSADFVTYTSLIQGLCKVKRLEQALIFLGKMVSKGFHPDVYTYTAVIHALCVENRLHEAR 66

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
              EEMAN N        PN VTYT +IDGLCK G VD+A  L  +M+ K + P  VTYN
Sbjct: 67  KFLEEMANRN------LTPNVVTYTVLIDGLCKGGRVDEAVALLSKMRKKCV-PTAVTYN 119

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI G C A   +EA  LL EM+  G  PD+ T+  ++   CK+ K D+A R+ E ++ R
Sbjct: 120 SLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRVFEQLVAR 179

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
           G  P+  T+S L+DG C  GR+  A +LF  M +S  C     +Y
Sbjct: 180 GFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 224


>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
 gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
          Length = 471

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 112/339 (33%), Positives = 173/339 (51%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M   R  PP L ++N+L   L K         + K++   G  P++ T+N 
Sbjct: 74  EEAMKLLEEMRE-RGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNS 132

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G V     +LG ++     P+ V +++LI GLC   + +EA  +  ++KA G
Sbjct: 133 LVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKFLEAKEVLEEMKASG 192

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK-------- 250
             P+  TYS LI+GLC+      A  +   MA       VV         CK        
Sbjct: 193 VTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQ 252

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHG 297
                       P+ VTY T+IDGLCK G + +A+ +  QM++  ++ PDVVTY+++I+G
Sbjct: 253 KTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVING 312

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C ++   EA  LL  M   G  PDVVT+  I+D LCK G+++EA  LL+ M   G  PN
Sbjct: 313 LCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPN 372

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++TL+ G C   +V+ A+ +   M + GC   + +Y
Sbjct: 373 VVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTY 411



 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 167/322 (51%), Gaps = 30/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L    A+ K  +  + L + +   G  P+L TYN+L++  CK+  V     V
Sbjct: 55  PNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDV 114

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + +++   F P+ + F SL+ G C    + +A  L   + A G +PNV+TYS LI+GLC+
Sbjct: 115 VKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCK 174

Query: 225 TGHTIVALNLFEEM-ANG----------------------------NGKFGVVCKPNTVT 255
           +   + A  + EEM A+G                                G  C P+ V 
Sbjct: 175 SQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y++II   CK G + +A++   +M+ +  +PDVVTYN++I G C      EA  +L +M 
Sbjct: 235 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQ 294

Query: 316 DQG-VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + G V PDVVT++ +++ LCK+  + EA +LL+ M   G NP+  T++T++DG C  GR+
Sbjct: 295 ESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRL 354

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+ L   M+  GC   V +Y
Sbjct: 355 EEAEYLLQGMKRAGCAPNVVTY 376



 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 162/287 (56%), Gaps = 8/287 (2%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            MRP+   + +++ L   L K++ +     + + + ++G+ PD +TY+ LI+  CK  ++
Sbjct: 157 GMRPN---VVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKI 213

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +L R+  S  TPD V ++S+I   C   +++EA     +++     P+V+TY+T+
Sbjct: 214 EEAEQMLRRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTV 273

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+GLC+ G    A  + ++M            P+ VTY+T+I+GLCK   + +A++L  +
Sbjct: 274 IDGLCKLGKIAEAQVILDQMQESGDVL-----PDVVTYSTVINGLCKSDMLVEAQKLLDR 328

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M     NPDVVTY ++I G C      EA  LL  M   G  P+VVT+  ++  LCK  K
Sbjct: 329 MCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTYTTLISGLCKARK 388

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +DEA R++E M   G  PN  T++T+++G C++GR+  A++L   M+
Sbjct: 389 VDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMK 435



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           L S G  P++ TY  LI  F +  ++     +L  +      P+ V +  L+  LC  S 
Sbjct: 48  LRSMGCDPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSM 107

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKP 251
           +  A  +  K+   G  PNV+T+++L++G C+ G+   A  L   M A G        +P
Sbjct: 108 VGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKG-------MRP 160

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N VTY+ +IDGLCK     +AKE+  +MK   + PD  TY++LIHG C A+   EA  +L
Sbjct: 161 NVVTYSALIDGLCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQML 220

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M   G  PDVV ++ I+   CK+GK+ EA + L+ M  +  +P+  T++T++DG C  
Sbjct: 221 RRMAGSGCTPDVVVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKL 280

Query: 372 GRVNHAKELFVSMESMG 388
           G++  A+ +   M+  G
Sbjct: 281 GKIAEAQVILDQMQESG 297



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 141/272 (51%), Gaps = 9/272 (3%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
             L L + + S G  PD +T+  +I      G +      L  +   C  P+ V +T+LI
Sbjct: 8   AALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSM--GC-DPNVVTYTALI 64

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
                  ++ EA  L  +++  GC PN++TY+ L++ LC+      A ++ ++M  G   
Sbjct: 65  AAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGG-- 122

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           F     PN +T+ +++DG CK G VD A++L   M  K + P+VVTY++LI G C +  +
Sbjct: 123 FA----PNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKSQKF 178

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  +L EM   GV PD  T++ ++  LCK  K++EA ++L  M   G  P+   +S++
Sbjct: 179 LEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVVYSSI 238

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  FC +G++  A++    M        V +Y
Sbjct: 239 IHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTY 270



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/213 (36%), Positives = 124/213 (58%), Gaps = 9/213 (4%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAA 198
           PD+ TYN +I+  CK+G+++   V+L ++  S    PD V ++++I GLC    ++EA  
Sbjct: 265 PDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYSTVINGLCKSDMLVEAQK 324

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L  ++   GC P+V+TY+T+I+GLC+ G    A  L + M          C PN VTYTT
Sbjct: 325 LLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG------CAPNVVTYTT 378

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I GLCK   VD+A+ +  +M++    P++VTYN++++G C +    EA  L+  M D  
Sbjct: 379 LISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMVNGLCVSGRIKEAQQLVQRMKDGR 438

Query: 319 VQ--PDVVTFNVIMDELCKNGKMDEASRLLELM 349
            +  PD  T+  I++ L  +  + EA +LLE M
Sbjct: 439 AECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/244 (33%), Positives = 129/244 (52%), Gaps = 9/244 (3%)

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C  G +     +L  +  + F PDA   T +I  + A +  ++ A     L++ GC PNV
Sbjct: 1   CNAGDLHAALELLEEMKSAGFAPDAFTHTPIITAM-ANAGDLDGA--MDHLRSMGCDPNV 57

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ LI    R      A+ L EEM          C PN VTY  ++D LCK   V  A
Sbjct: 58  VTYTALIAAFARAKKLEEAMKLLEEMRERG------CPPNLVTYNVLVDALCKLSMVGAA 111

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           +++  +M +    P+V+T+NSL+ GFC   + ++A  LL  M+ +G++P+VVT++ ++D 
Sbjct: 112 QDVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDG 171

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK+ K  EA  +LE M   GV P+  T+S L+ G C   ++  A+++   M   GC   
Sbjct: 172 LCKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPD 231

Query: 393 VFSY 396
           V  Y
Sbjct: 232 VVVY 235



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 119/229 (51%), Gaps = 10/229 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNI 147
           EA      M   R SP  +T +N +   L K         +  ++  +G + PD+ TY+ 
Sbjct: 250 EAQKTLQEMRKQRKSPDVVT-YNTVIDGLCKLGKIAEAQVILDQMQESGDVLPDVVTYST 308

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK   +     +L R+ ++   PD V +T++I GLC   R+ EA  L   +K  G
Sbjct: 309 VINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAG 368

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+TLI+GLC+      A  + EEM N        C PN VTY T+++GLC  G
Sbjct: 369 CAPNVVTYTTLISGLCKARKVDEAERVMEEMRNAG------CPPNLVTYNTMVNGLCVSG 422

Query: 268 FVDKAKELFLQMKD--KNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            + +A++L  +MKD     +PD  TY ++++    ++   EA  LL +M
Sbjct: 423 RIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471


>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 754

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/292 (35%), Positives = 165/292 (56%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN L   L K  H    + +   +   G  PD+YTYN +I+  CK+G V      
Sbjct: 293 PDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEF 352

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++    +P+ V + +LI  LC E+++ EA  L   L + G  P+V T+++LI GLC 
Sbjct: 353 LDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCL 412

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T +  VA+ LFEEM +        C+P+  TY  +ID LC +G +D+A  +  QM+    
Sbjct: 413 TRNHRVAMELFEEMRSKG------CEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGC 466

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              V+TYN+LI GFC AN   EA  +  EM   GV  + VT+N ++D LCK+ ++++AS+
Sbjct: 467 ARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDASQ 526

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ MI+ G  P+  T+++L+  FC  G +  A ++  +M S GC+  + +Y
Sbjct: 527 LMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/328 (31%), Positives = 159/328 (48%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY------------------- 145
           P +++FN+L   L +       + + + + S GL PD  T+                   
Sbjct: 187 PDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRI 246

Query: 146 ----------------NILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLC 188
                           N++++ FCK GRV      +  +  +  F PD   F +L+ GLC
Sbjct: 247 REQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLC 306

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               +  A  +   +   G  P+V TY+++I+GLC+ G    A+   ++M   +      
Sbjct: 307 KAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRD------ 360

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C PNTVTY T+I  LCKE  V++A EL   +  K I PDV T+NSLI G C   +   A 
Sbjct: 361 CSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAM 420

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L  EM  +G +PD  T+N+++D LC  GK+DEA  +L+ M L G   +  T++TL+DGF
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C   ++  A+E+F  ME  G      +Y
Sbjct: 481 CKANKIREAEEIFDEMEVHGVSRNSVTY 508



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 162/309 (52%), Gaps = 5/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   +  +M++     P    +N +   L    +   V     +++  G+ PD+ T+N+
Sbjct: 135 DEILGVVHWMIDDFGLKPDTHFYNRMLNLLVDGNNLKLVEIAHAKMSVWGIKPDVSTFNV 194

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C+  ++    ++L  +      PD   FT++++G   E  +  A  +  ++  FG
Sbjct: 195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEGDLDGALRIREQMVEFG 254

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C  + ++ + +++G C+ G    ALN  +EM+N +G F     P+  T+ T+++GLCK G
Sbjct: 255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFF-----PDQYTFNTLVNGLCKAG 309

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A E+   M  +  +PDV TYNS+I G C   +  EA   L +M+ +   P+ VT+N
Sbjct: 310 HVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYN 369

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCK  +++EA+ L  ++  +G+ P+  TF++L+ G CLT     A ELF  M S 
Sbjct: 370 TLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSK 429

Query: 388 GCKHTVFSY 396
           GC+   F+Y
Sbjct: 430 GCEPDEFTY 438



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 151/298 (50%), Gaps = 11/298 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA    D M+  R   P   ++N L   L K    +    L + L S G+ PD+ T+N L
Sbjct: 348 EAVEFLDQMIT-RDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406

Query: 149 INCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I   C + R     + L   +RS  C  PD   +  LI  LC++ ++ EA  +  +++  
Sbjct: 407 IQGLC-LTRNHRVAMELFEEMRSKGC-EPDEFTYNMLIDSLCSKGKLDEALNMLKQMELS 464

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC  +VITY+TLI+G C+      A  +F+EM       GV    N+VTY T+IDGLCK 
Sbjct: 465 GCARSVITYNTLIDGFCKANKIREAEEIFDEME----VHGV--SRNSVTYNTLIDGLCKS 518

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V+ A +L  QM  +   PD  TYNSL+  FC   D  +A  ++  M   G +PD+VT+
Sbjct: 519 RRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTY 578

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             ++  LCK G+++ AS+LL  + ++G+      ++ ++ G     +   A  LF  M
Sbjct: 579 GTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAINLFREM 636



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 8/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  T+++   + LF+ + S G  PD +TYN+LI+  C  G++     +
Sbjct: 398 PDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNM 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  S      + + +LI G C  ++I EA  +F +++  G   N +TY+TLI+GLC+
Sbjct: 458 LKQMELSGCARSVITYNTLIDGFCKANKIREAEEIFDEMEVHGVSRNSVTYNTLIDGLCK 517

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L ++M    G+     KP+  TY +++   C+ G + KA ++   M     
Sbjct: 518 SRRVEDASQLMDQMIM-EGQ-----KPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGC 571

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY +LI G C A     A+ LL  +  +G+      +N ++  L +  K  EA  
Sbjct: 572 EPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHAYNPVIQGLFRKRKTTEAIN 631

Query: 345 LLELMILRG-VNPNTSTFSTLMDGFC-LTGRVNHAKELFVSMESMG 388
           L   M+ +    P+  ++  +  G C   G +  A +  V +   G
Sbjct: 632 LFREMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKG 677



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 7/211 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M     S   +T +N L   L K++  +    L  ++   G  PD +TYN L
Sbjct: 488 EAEEIFDEMEVHGVSRNSVT-YNTLIDGLCKSRRVEDASQLMDQMIMEGQKPDKFTYNSL 546

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  FC+ G +     ++  +  +   PD V + +LI GLC   R+  A+ L   ++  G 
Sbjct: 547 LTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGI 606

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
                 Y+ +I GL R   T  A+NLF EM   N        P+ V+Y  +  GLC  G 
Sbjct: 607 ALTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNE-----AAPDAVSYRIVFRGLCNGGG 661

Query: 269 -VDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            + +A +  +++ +K   P+  +   L  G 
Sbjct: 662 PIREAVDFLVELLEKGFVPEFSSLYMLAEGL 692


>gi|357167759|ref|XP_003581319.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Brachypodium distachyon]
          Length = 554

 Score =  196 bits (497), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/304 (32%), Positives = 166/304 (54%), Gaps = 8/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M   R   P + +FN L   + + +  D V  L+K ++  G+ PD+YTY  LI  F
Sbjct: 208 VFDEM--RRSVQPTVVTFNTLISGMCRARDLDAVDGLYKEMSDVGVKPDVYTYGALIKGF 265

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ GR+ +   +   +  +   P+AV FT+LI   C E  +     L+  ++  G  P++
Sbjct: 266 CRTGRMENAVKMFNEMRDTGVNPNAVVFTTLIDAHCKEGNVNAGMDLYQDMRVRGVMPDL 325

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+ L+NGLCR  +   A ++ EEM N         KP+ VTYTT+IDG CK+G +D A
Sbjct: 326 VAYNALVNGLCRARNLKAAESIVEEMKNAG------LKPDKVTYTTLIDGCCKDGKLDMA 379

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            ++  +M +K ++ D VTY +LI G   A    +A  +L EMM+  ++PD  T+ +++D 
Sbjct: 380 MDIKQKMAEKEVSLDEVTYTALISGLSKAGRPVDAERVLREMMEAALEPDNTTYTMVIDA 439

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C+ G +    +LL+ M  +G  P   T++ +M+G C  G++ +A  L  +M ++G    
Sbjct: 440 FCRKGDVKTGFKLLKEMQNKGKKPGVVTYNVIMNGLCKLGQMKNADMLLHAMLNIGVSPD 499

Query: 393 VFSY 396
             +Y
Sbjct: 500 DITY 503



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           EA    ++++D G+ P+   FNV+M +  + G++  A ++ + M  R V P   TF+TL+
Sbjct: 169 EAYTFYLQLLDAGMAPETRLFNVLMRDFVRLGELVSARKVFDEM-RRSVQPTVVTFNTLI 227

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G C    ++    L+  M  +G K  V++Y
Sbjct: 228 SGMCRARDLDAVDGLYKEMSDVGVKPDVYTY 258


>gi|222640196|gb|EEE68328.1| hypothetical protein OsJ_26607 [Oryza sativa Japonica Group]
          Length = 461

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/266 (38%), Positives = 151/266 (56%), Gaps = 5/266 (1%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           R +   + P L+TY ILI C C+ GR+  GF  LG +++  +  + + FT L+K LCAE 
Sbjct: 88  RSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCAEK 147

Query: 192 RIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           R   A  +   ++   GC P+V +Y+ L+ GLC    +  AL L   MA+  G     C 
Sbjct: 148 RTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGD----CP 203

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+ V+Y+TIIDGL KEG  DKA   + +M ++ I PDVVTYN+++   C A   ++A  +
Sbjct: 204 PDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDV 263

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L  M+  GV PD +T+N I+   C +G+  EA  +LE M   GV P+  T+++LMD  C 
Sbjct: 264 LNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCK 323

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            GR   A+++  SM   G K  V +Y
Sbjct: 324 NGRCIEARKILDSMIKRGLKPNVITY 349



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 96/179 (53%), Gaps = 6/179 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + S++ +   L K    D   S +  +   G+ PD+ TYN ++   CK   +     
Sbjct: 203 PPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMD 262

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL R++++   PD + + S++ G C+  +  EA  +  K+ + G +P+ +TY++L++ LC
Sbjct: 263 VLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLC 322

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           + G  I A  + + M     K G+  KPN +TY+T++ G   +G + + ++L   M+++
Sbjct: 323 KNGRCIEARKILDSMI----KRGL--KPNVITYSTLLHGYATKGALVEMRDLLDLMQNE 375



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 80/162 (49%), Gaps = 1/162 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML  R   P + ++N +   L K +  D  + +  R+   G+ PD  TYN 
Sbjct: 223 DKAYSTYHEMLE-RGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNS 281

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C  G+      +L ++      PDAV +TSL+  LC   R +EA  +   +   G
Sbjct: 282 IVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKRG 341

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
            KPNVITYSTL++G    G  +   +L + M N   K    C
Sbjct: 342 LKPNVITYSTLLHGYATKGALVEMRDLLDLMQNEAAKINSGC 383


>gi|242067353|ref|XP_002448953.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
 gi|241934796|gb|EES07941.1| hypothetical protein SORBIDRAFT_05g002330 [Sorghum bicolor]
          Length = 734

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 114/354 (32%), Positives = 180/354 (50%), Gaps = 29/354 (8%)

Query: 59  TVKDRA-SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
           TV+DR   LE+ +  R +S   G       ++A  +FD +L +   P  + +FN +   +
Sbjct: 7   TVRDRCLELERIIAARARSGSLG------LDDALKLFDELL-IHARPASVVAFNQILNAV 59

Query: 118 AKTKHYDT-----------VLSLFKRLN---STGLFPDLYTYNILINCFCKMGRVSHGFV 163
           ++                 V+SLF R+    S  + P+  TY+ILI C C+MGR+ H F 
Sbjct: 60  SRASRASGRRSSSTSESELVVSLFNRMVRECSIKVAPNTCTYSILIGCLCRMGRLKHSFA 119

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGL 222
             G IL++ +  + +    L+KGLC   R+ EA   L  ++   GC P+ ++YS L+ G 
Sbjct: 120 TFGLILKTGWRVNDIVINQLLKGLCDGKRVGEAMDVLLQRMPELGCTPDTVSYSILLKGF 179

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C       AL L   MAN +G+    C PN VTYTT+IDGLCK    D+A+ +F QM D 
Sbjct: 180 CNENRAEEALELLRMMANDHGR---SCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDN 236

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + P+  TYN LIHG+     W E   +L +M  +G++PD  T+  +++ LC    + E 
Sbjct: 237 GVKPNNDTYNCLIHGYLSIGKWKEVVQMLEKMSARGLKPDCYTYGSLLNYLC---ALSEM 293

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              L+LM+  G++P+   F+     +   G ++ A ++F  M   G    V +Y
Sbjct: 294 HSFLDLMVENGLSPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNY 347



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 158/296 (53%), Gaps = 9/296 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP + ++  +   L K + +D    +F+++   G+ P+  TYN LI+ +  +G+   
Sbjct: 201 RSCPPNVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGVKPNNDTYNCLIHGYLSIGKWKE 260

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L ++      PD   + SL+  LCA S   E  +    +   G  P+   ++   +
Sbjct: 261 VVQMLEKMSARGLKPDCYTYGSLLNYLCALS---EMHSFLDLMVENGLSPDHHIFNIFFS 317

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
              + G    A+++F +M     + G+   PN V Y  +ID LCK G VD A+  F QM 
Sbjct: 318 AYAKCGMIDKAMDIFNKMR----QHGL--SPNVVNYGALIDALCKLGRVDDAEVKFNQMI 371

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           ++ + P++V +NSL++G C  + W  A  L+ EM+DQG+ P+ V FN ++  LC  G++ 
Sbjct: 372 NEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGRVM 431

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E  RL++LM   GV P+  +++ L+ G+CL GR + A+++F  M S+G   T  +Y
Sbjct: 432 EGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTY 487



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/384 (28%), Positives = 176/384 (45%), Gaps = 45/384 (11%)

Query: 48  TTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPL 107
           +  K KE +++  K  A   + LK  C + G         +E     D M+    SP   
Sbjct: 254 SIGKWKEVVQMLEKMSA---RGLKPDCYTYGSLLNYLCALSEMHSFLDLMVENGLSPDHH 310

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             FN+ F   AK    D  + +F ++   GL P++  Y  LI+  CK+GRV    V   +
Sbjct: 311 I-FNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEVKFNQ 369

Query: 168 ILRSCFTPDAVAFTSLIKGLC-------AES----------------------------R 192
           ++    TP+ V F SL+ GLC       AE                             R
Sbjct: 370 MINEGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNTLICNLCNVGR 429

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           +ME   L   ++  G +P+  +Y+ LI+G C  G T  A  +F+      G   +   P 
Sbjct: 430 VMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFD------GMVSIGLSPT 483

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            VTY T++ G C    +D A  LF +M  K + P VVTYN+++HG      ++EA  L +
Sbjct: 484 EVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYL 543

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M++ G + D+ T+N+I++ LCK+  +DEA ++ + +  +G+  N  TF+ ++      G
Sbjct: 544 NMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGG 603

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           R   A +LF ++ + G    V +Y
Sbjct: 604 RKEDAMDLFAAIPANGLVPNVVTY 627



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 145/301 (48%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N     P +  FN L   L     ++    L   +   G+ P+   +N 
Sbjct: 361 DDAEVKFNQMIN-EGVTPNIVVFNSLVYGLCTVDKWERAEELVYEMLDQGICPNAVFFNT 419

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C +GRV  G  ++  +      PDA ++T LI G C   R  EA  +F  + + G
Sbjct: 420 LICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIG 479

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  +TY+TL++G C       A  LF EM     + GV   P  VTY TI+ GL +  
Sbjct: 480 LSPTEVTYNTLLHGYCSASRIDDAYCLFREML----RKGVT--PGVVTYNTILHGLFQTK 533

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AKEL+L M +     D+ TYN +++G C +N  +EA  +   +  +G+Q +++TF 
Sbjct: 534 RFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFT 593

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K G+ ++A  L   +   G+ PN  T+  + +     G +     LF +ME  
Sbjct: 594 IMIGALLKGGRKEDAMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKN 653

Query: 388 G 388
           G
Sbjct: 654 G 654



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L   +   G+ PD ++Y  LI+ +C  GR      V   ++    +P  V + +L+ G C
Sbjct: 436 LIDLMEHVGVRPDAFSYTPLISGYCLAGRTDEAEKVFDGMVSIGLSPTEVTYNTLLHGYC 495

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           + SRI +A  LF ++   G  P V+TY+T+++GL +T     A  L+  M N     G  
Sbjct: 496 SASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINS----GTK 551

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C  +  TY  I++GLCK   VD+A ++F  +  K +  +++T+  +I          +A 
Sbjct: 552 C--DIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKEDAM 609

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L   +   G+ P+VVT+ ++ + L + G ++E   L   M   G  PN+   + L+   
Sbjct: 610 DLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRL 669

Query: 369 CLTGRVNHA 377
              G ++ A
Sbjct: 670 LHRGDISRA 678



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 126/289 (43%), Gaps = 9/289 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           + D M ++   P   +   L+ G CLA     D    +F  + S GL P   TYN L++ 
Sbjct: 436 LIDLMEHVGVRPDAFSYTPLISGYCLAGRT--DEAEKVFDGMVSIGLSPTEVTYNTLLHG 493

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +C   R+   + +   +LR   TP  V + +++ GL    R  EA  L+  +   G K +
Sbjct: 494 YCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCD 553

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           + TY+ ++NGLC++     A  +F+ + +   +       N +T+T +I  L K G  + 
Sbjct: 554 IYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQL------NIITFTIMIGALLKGGRKED 607

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A +LF  +    + P+VVTY  +           E + L   M   G  P+    N ++ 
Sbjct: 608 AMDLFAAIPANGLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVR 667

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            L   G +  A   L  +  R  +   ST S L+  F      +HAK L
Sbjct: 668 RLLHRGDISRAGAYLSKLDERNFSVEASTTSLLISIFTSDEYQHHAKSL 716



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 9/244 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+++  SP  +T   LL G  + ++  D    LF+ +   G+ P + TYN 
Sbjct: 466 DEAEKVFDGMVSIGLSPTEVTYNTLLHGYCSASR-IDDAYCLFREMLRKGVTPGVVTYNT 524

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++   +  R S    +   ++ S    D   +  ++ GLC  + + EA  +F  L + G
Sbjct: 525 ILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKG 584

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            + N+IT++ +I  L + G    A++LF  + ANG         PN VTY  + + L +E
Sbjct: 585 LQLNIITFTIMIGALLKGGRKEDAMDLFAAIPANG-------LVPNVVTYRLVAENLIEE 637

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++   LF  M+     P+    N+L+    +  D + A   L ++ ++    +  T 
Sbjct: 638 GSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRAGAYLSKLDERNFSVEASTT 697

Query: 327 NVIM 330
           ++++
Sbjct: 698 SLLI 701


>gi|115475535|ref|NP_001061364.1| Os08g0248400 [Oryza sativa Japonica Group]
 gi|113623333|dbj|BAF23278.1| Os08g0248400, partial [Oryza sativa Japonica Group]
          Length = 440

 Score =  195 bits (496), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/268 (38%), Positives = 151/268 (56%), Gaps = 5/268 (1%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
             R +   + P L+TY ILI C C+ GR+  GF  LG +++  +  + + FT L+K LCA
Sbjct: 86  MARSSDGAVTPTLHTYGILIGCCCRAGRLDLGFAGLGNVIKKGYRVEPIIFTPLLKSLCA 145

Query: 190 ESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           E R   A  +   ++   GC P+V +Y+ L+ GLC    +  AL L   MA+  G     
Sbjct: 146 EKRTSNAMNIVLRRMTELGCAPHVFSYNILLKGLCHESRSQEALELLHMMADDGGD---- 201

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ V+Y+TIIDGL KEG  DKA   + +M ++ I PDVVTYN+++   C A   ++A 
Sbjct: 202 CPPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAM 261

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +L  M+  GV PD +T+N I+   C +G+  EA  +LE M   GV P+  T+++LMD  
Sbjct: 262 DVLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYL 321

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  GR   A+++  SM   G K  V +Y
Sbjct: 322 CKNGRCIEARKILDSMIKRGLKPNVITY 349



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/275 (27%), Positives = 140/275 (50%), Gaps = 8/275 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGF 162
           P + S+N+L   L         L L   +   G    PD+ +Y+ +I+   K G     +
Sbjct: 167 PHVFSYNILLKGLCHESRSQEALELLHMMADDGGDCPPDVVSYSTIIDGLFKEGDSDKAY 226

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +L     PD V + +++  LC    + +A  +  ++   G  P+ ITY+++++G 
Sbjct: 227 STYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMDVLNRMVKNGVMPDCITYNSIVHGY 286

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C +G +  A+ + E+M +         +P+ VTYT+++D LCK G   +A+++   M  +
Sbjct: 287 CSSGQSKEAIGILEKMCSDG------VEPDAVTYTSLMDYLCKNGRCIEARKILDSMIKR 340

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + P+V+TY++L+HG+       E   LL  M+  G+QPD   F++++    K+  +D A
Sbjct: 341 GLKPNVITYSTLLHGYATKGALVEMRDLLDLMVRNGIQPDRHVFSILICACTKHQNVDVA 400

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
             +   M  + + P+  T+ TL+DG C +GRV+ A
Sbjct: 401 MFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDA 435



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 129/244 (52%), Gaps = 6/244 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + S++ +   L K    D   S +  +   G+ PD+ TYN ++   CK   +     
Sbjct: 203 PPDVVSYSTIIDGLFKEGDSDKAYSTYHEMLERGILPDVVTYNTIVAALCKAQAMDKAMD 262

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL R++++   PD + + S++ G C+  +  EA  +  K+ + G +P+ +TY++L++ LC
Sbjct: 263 VLNRMVKNGVMPDCITYNSIVHGYCSSGQSKEAIGILEKMCSDGVEPDAVTYTSLMDYLC 322

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  I A  + + M     K G+  KPN +TY+T++ G   +G + + ++L   M    
Sbjct: 323 KNGRCIEARKILDSMI----KRGL--KPNVITYSTLLHGYATKGALVEMRDLLDLMVRNG 376

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I PD   ++ LI       + + A  +  +M  Q + PDVVT+  ++D LCK+G++D+A 
Sbjct: 377 IQPDRHVFSILICACTKHQNVDVAMFVFSKMRQQRLTPDVVTYGTLIDGLCKSGRVDDAM 436

Query: 344 RLLE 347
             LE
Sbjct: 437 LNLE 440


>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
 gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
          Length = 707

 Score =  195 bits (495), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/264 (37%), Positives = 152/264 (57%), Gaps = 6/264 (2%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +N   + PD++TYNILI+  CK  +      +L  ++    TPD V F S++ GLC   +
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
              A +L   +    C+P+  TY+TLI+GLC+  +   A  L +E  +     G V  P+
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSS----GFV--PD 114

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            VTY+ + DGLCK G +D+A EL  +M      P++VTYN+LI G C A+   +A  LL 
Sbjct: 115 VVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            ++  G  PDVVT+ +I+D LCK G++D+A +++E M+ RG  P+  T++ LM+G C TG
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 234

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           RV+ A  +F  M S  C     +Y
Sbjct: 235 RVDEAHHIFKEMVSKDCTADALAY 258



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 162/298 (54%), Gaps = 13/298 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   ++N L   L K ++ D   +L     S+G  PD+ TY+IL +  CK GR+  
Sbjct: 74  RNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDE 133

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            F ++  +  +  TP+ V + +LI GLC  S+  +A  L   L + G  P+V+TY+ +++
Sbjct: 134 AFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVD 193

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC+ G    AL + E M     K G  C P+ +TYT +++GLC+ G VD+A  +F +M 
Sbjct: 194 GLCKEGRLDKALKMVEGML----KRG--CTPSVITYTALMEGLCRTGRVDEAHHIFKEMV 247

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ--PDVVTFNVIMDELCKNGK 338
            K+   D + Y SL++G+C ++   EA  ++      G++  P +  +N +MD  CK G+
Sbjct: 248 SKDCTADALAYVSLVNGYCKSSRTKEAQKVV-----DGIRGTPYIDVYNALMDGYCKEGR 302

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DE   + E M  RG  PN  T++ +MDG C  G+V+ A     SM S GC   V SY
Sbjct: 303 LDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSY 360



 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 159/311 (51%), Gaps = 26/311 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L K    +    L + L S+G  PD+ TY I+++  CK GR+     +
Sbjct: 148 PNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKM 207

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L+   TP  + +T+L++GLC   R+ EA  +F ++ +  C  + + Y +L+NG C+
Sbjct: 208 VEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCK 267

Query: 225 TGHTIVA------------LNLFEEMANGNGKFGVV--------------CKPNTVTYTT 258
           +  T  A            ++++  + +G  K G +              C PN  TY  
Sbjct: 268 SSRTKEAQKVVDGIRGTPYIDVYNALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNI 327

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++DGLCK G VD+A      M      PDVV+YN +I G   A+   EA  +L +M+  G
Sbjct: 328 VMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAG 387

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + PD VT+N +M + CK  + D+A  +L+ MI  GV+P+  T++TL+ G   T R+  A 
Sbjct: 388 IPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAY 447

Query: 379 ELFVSMESMGC 389
           EL   M   GC
Sbjct: 448 ELMHEMLRNGC 458



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 154/310 (49%), Gaps = 26/310 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    D    L K ++  G  P+L TYN LI+  CK  +    + +
Sbjct: 113 PDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLIDGLCKASKTEKAYEL 172

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S F PD V +T ++ GLC E R+ +A  +   +   GC P+VITY+ L+ GLCR
Sbjct: 173 LETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCR 232

Query: 225 TGHTIVALNLFEEM---------------ANGNGKF-----------GVVCKPNTVTYTT 258
           TG    A ++F+EM                NG  K            G+   P    Y  
Sbjct: 233 TGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKVVDGIRGTPYIDVYNA 292

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++DG CKEG +D+   +F  M  +   P++ TYN ++ G C     +EA   L  M   G
Sbjct: 293 LMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAG 352

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PDVV++N+I+D L K  K  EA ++L+ MI  G+ P+  T++TLM  FC   R + A 
Sbjct: 353 CVPDVVSYNIIIDGLFKASKPKEARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAV 412

Query: 379 ELFVSMESMG 388
            +  +M   G
Sbjct: 413 GILKNMIKAG 422



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 87/283 (30%), Positives = 146/283 (51%), Gaps = 6/283 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N R   P + ++N+L   L K    D    +   +   G+ PD  T+N +++  CK G+
Sbjct: 1   MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 60

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
                 +L  +      P    + +LI GLC +  +  A  L  +  + G  P+V+TYS 
Sbjct: 61  FERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSI 120

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L +GLC+ G    A  L +EM+ GNG     C PN VTY T+IDGLCK    +KA EL  
Sbjct: 121 LADGLCKRGRIDEAFELVKEMS-GNG-----CTPNLVTYNTLIDGLCKASKTEKAYELLE 174

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            +      PDVVTY  ++ G C     ++A  ++  M+ +G  P V+T+  +M+ LC+ G
Sbjct: 175 TLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 234

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++DEA  + + M+ +    +   + +L++G+C + R   A+++
Sbjct: 235 RVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQKV 277



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 148/297 (49%), Gaps = 9/297 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N++   L K    D      + ++S G  PD+ +YNI+I+   K  +   
Sbjct: 316 RGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASKPKE 375

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              VL +++++   PDAV + +L+   C E R  +A  +   +   G  P+ +TY+TLI+
Sbjct: 376 ARQVLDQMIQAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLIS 435

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GL +T     A  L  EM   NG     C     TY TIID LCKEG + +A  L   M 
Sbjct: 436 GLSQTNRLGDAYELMHEMLR-NGCVVSAC----TTYNTIIDRLCKEGCLKQALLLMDHMT 490

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  + VTYN  I   C     +EA+ LL EM       D V++  ++  LCK  ++D
Sbjct: 491 GHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEM---DTLRDEVSYTTVIIGLCKAEQLD 547

Query: 341 EASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            AS+L  E++ ++G+   + TF+ L+D F  T R++ A  L   M   GC  +V +Y
Sbjct: 548 RASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITY 604



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 92/314 (29%), Positives = 153/314 (48%), Gaps = 12/314 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G   A  P EA  + D M+     PP   ++N L     K + +D  + + K +   G+
Sbjct: 365 DGLFKASKPKEARQVLDQMIQA-GIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGV 423

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAA 197
            PD  TYN LI+   +  R+   + ++  +LR+ C       + ++I  LC E  + +A 
Sbjct: 424 DPDNVTYNTLISGLSQTNRLGDAYELMHEMLRNGCVVSACTTYNTIIDRLCKEGCLKQAL 483

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            L   +   G + N +TY+  I+ LC+ G    A +L  EM             + V+YT
Sbjct: 484 LLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDTLR---------DEVSYT 534

Query: 258 TIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T+I GLCK   +D+A +L  +M   K +     T+N LI  F      +EA  LL  M+ 
Sbjct: 535 TVIIGLCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQ 594

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  P V+T+N+++  LCK  K+D+A  L + M +RG+  ++ +++ L+ G C  GR   
Sbjct: 595 RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKE 654

Query: 377 AKELFVSMESMGCK 390
           A ++   M S  C+
Sbjct: 655 ALQVLEEMASSDCE 668



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 60/130 (46%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FNLL     KTK  D  L+L + +   G  P + TYN++I C CK+ +V   + +   +
Sbjct: 568 TFNLLIDAFTKTKRLDEALTLLELMVQRGCSPSVITYNMVITCLCKLDKVDKAWELFDEM 627

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                   +V++T LI GLC + R  EA  +  ++ +  C+ + +    L   L   G  
Sbjct: 628 AVRGIVASSVSYTVLIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRG 687

Query: 229 IVALNLFEEM 238
             A  L   M
Sbjct: 688 EEAAELLRRM 697



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/116 (25%), Positives = 48/116 (41%), Gaps = 1/116 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+  R   P + ++N++  CL K    D    LF  +   G+     +Y +
Sbjct: 583 DEALTLLELMVQ-RGCSPSVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTV 641

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           LI   C  GR      VL  +  S    D +    L   L  + R  EAA L  ++
Sbjct: 642 LIYGLCGQGRGKEALQVLEEMASSDCEIDDLKCRKLYLALRGQGRGEEAAELLRRM 697


>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  194 bits (494), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M + R   P L SF+ L G LA+  H    L  F+ +  +G+ PD   Y IL
Sbjct: 380 EAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 149 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I+ FC+ G +S    +   +L R CF  D V + + + GLC +    +A  LF ++   G
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  T++TLI G C+ G+   ALNLFE M   N       KP+ VTY T+IDG CK G
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN------LKPDKVTYNTLIDGFCKAG 551

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +AKEL+  M  K+I PD ++Y ++++GFC +    EA  L  +M+++G++P++VT N
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCN 611

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C++G M +A   L  MI  G+ P++ +++TL+DG+     +  A  L   ME  
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671

Query: 388 GCKHTVFSY 396
           G +  + +Y
Sbjct: 672 GLQFNIITY 680



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 152/278 (54%), Gaps = 6/278 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L     +    +    L    +S G+ P L TYN ++   CK+G+      VL 
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L+   TP+A  + +L+  +C    I+EA  +F ++   G  P+++++S+LI  L R G
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           H   AL  F EM     + G+V  P+ V YT +IDG C+ G +  A ++  +M  +    
Sbjct: 412 HLYQALMHFREME----RSGIV--PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTYN+ ++G C    + +A+ L  EM+++G+ PD  TF  ++   CK+G MD+A  L 
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           E M+   + P+  T++TL+DGFC  G +  AKEL+  M
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   + +  +      +F  ++  G+ PDL +++ LI    + G +    + 
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + RS   PD V +T LI G C    + +A  +  ++ A GC  +V+TY+T +NGLC+
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF EM     + G+V  P+  T+TT+I G CK+G +DKA  LF  M   N+
Sbjct: 480 KKMFADADMLFNEMV----ERGMV--PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTYN+LI GFC A +   A  L  +M+ + + PD +++  +++  C +G + EA  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+ +G+ PN  T +TL+ G+C +G +  A E    M S G     FSY
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 144/269 (53%), Gaps = 7/269 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ M+  R   P   +F  L     K  + D  L+LF+ +  T L PD  TYN L
Sbjct: 485 DADMLFNEMVE-RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G +     +   ++R    PD +++ +++ G C+   + EA  L  ++   G 
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN++T +TLI G CR+G    A     +M +     G++  P++ +Y T+IDG  KE  
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN----GII--PDSFSYNTLIDGYLKEAN 657

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KA  L  +M+ + +  +++TYN +++GFC      EA  +L +M++ G+ PD  T++ 
Sbjct: 658 LEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSS 717

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPN 357
           +++       M EA R  + M+ RG+ P+
Sbjct: 718 LINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 145/301 (48%), Gaps = 10/301 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF I    L  +     + + N L G L +T   D    ++  +   G+  ++YT NI
Sbjct: 207 SEAFQI----LRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNI 262

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  CK  +  +    L  +       D V + +LI   C E  + EA  L     + G
Sbjct: 263 MVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRG 322

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P ++TY+ ++ GLC+ G    A ++  EM     + G+   PN  TY T++  +C+  
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDRAKDVLIEML----QLGLT--PNAATYNTLLVEICRRD 376

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+E+F +M  + + PD+V+++SLI          +A     EM   G+ PD V + 
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  C+NG + +A ++ + M+ RG   +  T++T ++G C       A  LF  M   
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 388 G 388
           G
Sbjct: 497 G 497



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++LL     + K        F+ L   G+   +   N L+    + G V   + + G ++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R     +      ++  LC + +        + ++  G   +++TY+TLIN  CR G   
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L    ++         +P  +TY  I+ GLCK G  D+AK++ ++M    + P+  
Sbjct: 310 EAFQLLNSFSSRG------MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+L+   C  ++  EA  +  EM  +GV PD+V+F+ ++  L +NG + +A      M
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREM 423

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+ P+   ++ L+DGFC  G ++ A ++   M + GC   V +Y
Sbjct: 424 ERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTY 470



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           +++ K  ++++S      S GL      Y++L+  + +  ++  G      + R   +  
Sbjct: 167 VSRVKVVESLISTCFYFGSVGLI-----YDLLVRTYVQAKKLREGSEAFQILRRKGVSVS 221

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
             A   L+ GL     +  A  ++ ++   G + NV T + ++N LC+       +    
Sbjct: 222 INACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLS 281

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M  G G F      + VTY T+I+  C+EG V++A +L      + + P ++TYN++++
Sbjct: 282 DM-EGKGVFA-----DIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C    ++ A  +LIEM+  G+ P+  T+N ++ E+C+   + EA  + + M  RGV P
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  +FS+L+      G +  A   F  ME  G
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSG 427


>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Vitis vinifera]
          Length = 762

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    D    L K ++S G+ P+L +YN++IN  C+ G +   + +
Sbjct: 247 PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 306

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +    FTPD V + +L+ G C E    +A  +  ++   G  P+V+TY+ LIN +C+
Sbjct: 307 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 366

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A+  F++M           +PN  TYTT+IDG  ++G +++A  +  +M +   
Sbjct: 367 ARNLNRAMEFFDQMRIRG------LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 420

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P VVTYN+ IHG C      EA  ++ EM+++G+ PDVV+++ I+   C+ G++D A +
Sbjct: 421 SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 480

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M+ +GV+P+  T+S+L+ G C   R+  A +L   M  MG     F+Y
Sbjct: 481 MKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTY 532



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 155/293 (52%), Gaps = 16/293 (5%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG--- 166
           F+L+    +     D  ++      S+G  P + +YN +++   +    S G V L    
Sbjct: 145 FDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVR----SRGSVKLSAEE 200

Query: 167 ---RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
               ++RS  +P+   +  LI+G C+   + +    F +++  GC PNV+TY+TLI+  C
Sbjct: 201 VYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYC 260

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A  L + M++         +PN ++Y  II+GLC+EG + +A E+  +M  K 
Sbjct: 261 KMGRIDEAFGLLKSMSSKG------MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKG 314

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD VTYN+L++G+C   ++++A  +  EM+  GV P VVT+  +++ +CK   ++ A 
Sbjct: 315 FTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAM 374

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              + M +RG+ PN  T++TL+DGF   G +N A  +   M   G   +V +Y
Sbjct: 375 EFFDQMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 427



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 156/326 (47%), Gaps = 30/326 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +   M + +   P L S+N++   L +         + + +   G  PD  TYN 
Sbjct: 266 DEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 324

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK G      V+   ++R+  +P  V +T+LI  +C    +  A   F +++  G
Sbjct: 325 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 384

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------------NGKF 245
            +PN  TY+TLI+G  R G    A  +  EM                             
Sbjct: 385 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 444

Query: 246 GVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           GVV +       P+ V+Y+TII G C++G +D+A ++  +M +K ++PD VTY+SLI G 
Sbjct: 445 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 504

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C      EA  L  EM+D G+ PD  T+  +++  C  G +++A  L + MI +G  P+ 
Sbjct: 505 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 564

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
            T+S L++G     R   AK L   +
Sbjct: 565 VTYSVLINGLNKQARTREAKRLLFKL 590



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 161/312 (51%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I   M+    SP  +T +  L   + K ++ +  +  F ++   GL P+  TY  
Sbjct: 336 HQALVIHAEMVRNGVSPSVVT-YTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 394

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F + G ++  + +L  +  S F+P  V + + I G C   R+ EA  +  ++   G
Sbjct: 395 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 454

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V++YST+I+G CR G    A  + +EM       GV   P+ VTY+++I GLC+  
Sbjct: 455 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEK----GV--SPDAVTYSSLIQGLCEMR 508

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +L  +M D  + PD  TY +LI+ +C   D N+A  L  EM+ +G  PD VT++
Sbjct: 509 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 568

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD---------------GFCLTG 372
           V+++ L K  +  EA RLL  +I     P+  T+ TL++               GFC+ G
Sbjct: 569 VLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKG 628

Query: 373 RVNHAKELFVSM 384
            ++ A  +F SM
Sbjct: 629 LMHEADRVFESM 640



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 148/300 (49%), Gaps = 22/300 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+ I + M     SP  +T +N         +  +  L + + +   GL PD+ +Y+ 
Sbjct: 406 NEAYRILNEMTESGFSPSVVT-YNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 464

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FC+ G +   F +   ++    +PDAV ++SLI+GLC   R+ EA  L  ++   G
Sbjct: 465 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 524

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY+TLIN  C  G    AL+L +EM +     G +  P+ VTY+ +I+GL K+ 
Sbjct: 525 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHK----GFL--PDAVTYSVLINGLNKQA 578

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH---------------GFCYANDWNEANCLLI 312
              +AK L  ++  +   P  VTY++LI                GFC     +EA+ +  
Sbjct: 579 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 638

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M+++  +P    +NVI+   C+ G + +A  L + MI  G  P+T T  TL+      G
Sbjct: 639 SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLIKALFKEG 698



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 73/180 (40%), Gaps = 40/180 (22%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS-------------- 293
           V   ++  +  ++        +D+A       K     P V++YNS              
Sbjct: 137 VYNSSSAVFDLMVKSYSHLNMIDQAVNTINLAKSSGFMPGVLSYNSVLDAIVRSRGSVKL 196

Query: 294 -----------------------LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
                                  LI GFC   +  +      EM   G  P+VVT+N ++
Sbjct: 197 SAEEVYREMIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLI 256

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           D  CK G++DEA  LL+ M  +G+ PN  +++ +++G C  G +  A E+   +E MG K
Sbjct: 257 DAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI---LEEMGYK 313


>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Cucumis sativus]
          Length = 749

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 173/309 (55%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M + R   P L SF+ L G LA+  H    L  F+ +  +G+ PD   Y IL
Sbjct: 380 EAQEIFDEM-SRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYTIL 438

Query: 149 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I+ FC+ G +S    +   +L R CF  D V + + + GLC +    +A  LF ++   G
Sbjct: 439 IDGFCRNGALSDALKMRDEMLARGCFM-DVVTYNTFLNGLCKKKMFADADMLFNEMVERG 497

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  T++TLI G C+ G+   ALNLFE M   N       KP+ VTY T+IDG CK G
Sbjct: 498 MVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTN------LKPDKVTYNTLIDGFCKAG 551

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +AKEL+  M  K+I PD ++Y ++++GFC +    EA  L  +M+++G++P++VT N
Sbjct: 552 EMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGIRPNLVTCN 611

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C++G M +A   L  MI  G+ P++ +++TL+DG+     +  A  L   ME  
Sbjct: 612 TLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSYNTLIDGYLKEANLEKAFILINEMEKR 671

Query: 388 GCKHTVFSY 396
           G +  + +Y
Sbjct: 672 GLQFNIITY 680



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 152/278 (54%), Gaps = 6/278 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L     +    +    L    +S G+ P L TYN ++   CK+G+      VL 
Sbjct: 292 IVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILYGLCKIGKYDRAKDVLI 351

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L+   TP+A  + +L+  +C    I+EA  +F ++   G  P+++++S+LI  L R G
Sbjct: 352 EMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNG 411

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           H   AL  F EM     + G+V  P+ V YT +IDG C+ G +  A ++  +M  +    
Sbjct: 412 HLYQALMHFREME----RSGIV--PDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFM 465

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTYN+ ++G C    + +A+ L  EM+++G+ PD  TF  ++   CK+G MD+A  L 
Sbjct: 466 DVVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKALNLF 525

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           E M+   + P+  T++TL+DGFC  G +  AKEL+  M
Sbjct: 526 EAMVRTNLKPDKVTYNTLIDGFCKAGEMGRAKELWDDM 563



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   + +  +      +F  ++  G+ PDL +++ LI    + G +    + 
Sbjct: 360 PNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMH 419

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + RS   PD V +T LI G C    + +A  +  ++ A GC  +V+TY+T +NGLC+
Sbjct: 420 FREMERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCK 479

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF EM     + G+V  P+  T+TT+I G CK+G +DKA  LF  M   N+
Sbjct: 480 KKMFADADMLFNEMV----ERGMV--PDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNL 533

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTYN+LI GFC A +   A  L  +M+ + + PD +++  +++  C +G + EA  
Sbjct: 534 KPDKVTYNTLIDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALN 593

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+ +G+ PN  T +TL+ G+C +G +  A E    M S G     FSY
Sbjct: 594 LCDQMLEKGIRPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISNGIIPDSFSY 645



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 144/269 (53%), Gaps = 7/269 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ M+  R   P   +F  L     K  + D  L+LF+ +  T L PD  TYN L
Sbjct: 485 DADMLFNEMVE-RGMVPDFYTFTTLIRGYCKDGNMDKALNLFEAMVRTNLKPDKVTYNTL 543

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G +     +   ++R    PD +++ +++ G C+   + EA  L  ++   G 
Sbjct: 544 IDGFCKAGEMGRAKELWDDMIRKDIIPDHISYGTVLNGFCSSGLLPEALNLCDQMLEKGI 603

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN++T +TLI G CR+G    A     +M +     G++  P++ +Y T+IDG  KE  
Sbjct: 604 RPNLVTCNTLIKGYCRSGDMPKAYEYLSKMISN----GII--PDSFSYNTLIDGYLKEAN 657

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KA  L  +M+ + +  +++TYN +++GFC      EA  +L +M++ G+ PD  T++ 
Sbjct: 658 LEKAFILINEMEKRGLQFNIITYNLILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSS 717

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPN 357
           +++       M EA R  + M+ RG+ P+
Sbjct: 718 LINGHVSQDNMKEAFRFHDEMLQRGLVPD 746



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 145/301 (48%), Gaps = 10/301 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF I    L  +     + + N L G L +T   D    ++  +   G+  ++YT NI
Sbjct: 207 SEAFQI----LRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNI 262

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  CK  +  +    L  +       D V + +LI   C E  + EA  L     + G
Sbjct: 263 MVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVEEAFQLLNSFSSRG 322

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P ++TY+ ++ GLC+ G    A ++  EM     + G+   PN  TY T++  +C+  
Sbjct: 323 MEPGLLTYNAILYGLCKIGKYDRAKDVLIEML----QLGLT--PNAATYNTLLVEICRRD 376

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+E+F +M  + + PD+V+++SLI          +A     EM   G+ PD V + 
Sbjct: 377 NILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREMERSGIVPDNVIYT 436

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  C+NG + +A ++ + M+ RG   +  T++T ++G C       A  LF  M   
Sbjct: 437 ILIDGFCRNGALSDALKMRDEMLARGCFMDVVTYNTFLNGLCKKKMFADADMLFNEMVER 496

Query: 388 G 388
           G
Sbjct: 497 G 497



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 135/287 (47%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++LL     + K        F+ L   G+   +   N L+    + G V   + + G ++
Sbjct: 190 YDLLVRTYVQAKKLREGSEAFQILRRKGVSVSINACNKLLGGLVRTGWVDLAWEIYGEVV 249

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R     +      ++  LC + +        + ++  G   +++TY+TLIN  CR G   
Sbjct: 250 RGGIELNVYTLNIMVNALCKDRKFENVMFFLSDMEGKGVFADIVTYNTLINAYCREGLVE 309

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L    ++         +P  +TY  I+ GLCK G  D+AK++ ++M    + P+  
Sbjct: 310 EAFQLLNSFSSRG------MEPGLLTYNAILYGLCKIGKYDRAKDVLIEMLQLGLTPNAA 363

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+L+   C  ++  EA  +  EM  +GV PD+V+F+ ++  L +NG + +A      M
Sbjct: 364 TYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVLARNGHLYQALMHFREM 423

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+ P+   ++ L+DGFC  G ++ A ++   M + GC   V +Y
Sbjct: 424 ERSGIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMDVVTY 470



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 69/272 (25%), Positives = 132/272 (48%), Gaps = 11/272 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           +++ K  ++++S      S GL      Y++L+  + +  ++  G      + R   +  
Sbjct: 167 VSRVKVVESLISTCFYFGSVGLI-----YDLLVRTYVQAKKLREGSEAFQILRRKGVSVS 221

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
             A   L+ GL     +  A  ++ ++   G + NV T + ++N LC+       +    
Sbjct: 222 INACNKLLGGLVRTGWVDLAWEIYGEVVRGGIELNVYTLNIMVNALCKDRKFENVMFFLS 281

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M  G G F      + VTY T+I+  C+EG V++A +L      + + P ++TYN++++
Sbjct: 282 DM-EGKGVFA-----DIVTYNTLINAYCREGLVEEAFQLLNSFSSRGMEPGLLTYNAILY 335

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C    ++ A  +LIEM+  G+ P+  T+N ++ E+C+   + EA  + + M  RGV P
Sbjct: 336 GLCKIGKYDRAKDVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLP 395

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  +FS+L+      G +  A   F  ME  G
Sbjct: 396 DLVSFSSLIGVLARNGHLYQALMHFREMERSG 427


>gi|42408237|dbj|BAD09394.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|215678545|dbj|BAG92200.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 624

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 175/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +FD ML+  PSP  +T ++ +   L+KT+  D    +F R+   G+ PD   Y  
Sbjct: 224 DKAYSLFDAMLDRGPSPDVVT-YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTS 282

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C  G+      +  ++ R    PD V +T+L+  LC   +  EA  +F  L   G
Sbjct: 283 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRG 342

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGVV-------------- 248
            KP+  TY TL++G    G     H ++ L + + M  G+  F ++              
Sbjct: 343 HKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEAL 402

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V Y T++D LC  G VD A   F  +K + + P++V + +LIHG 
Sbjct: 403 LVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGL 462

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W++   L  EM+D+G+  D + FN IM  LCK G++ EA  L +LM+  G+ PNT
Sbjct: 463 CTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNT 522

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +T++TL+DG+CL G+++ A +L   M   G K +  +Y
Sbjct: 523 NTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTY 560



 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 112/365 (30%), Positives = 181/365 (49%), Gaps = 49/365 (13%)

Query: 72  ERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK 131
           +R K  G+    A  P +A  +FD +L  R     +   N     +A+       +SLF 
Sbjct: 30  KRTKQGGRQ--RATEPGDAHQVFDRLLK-RGDRASIFDLNRALSDVARASPA-VAISLFN 85

Query: 132 RL---NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           R+    +T   P++ TY I+I C  ++GR+   F  +GR++ +      + F+ L+KGLC
Sbjct: 86  RMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRMSPILFSPLLKGLC 145

Query: 189 AESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
              R  +A  +   ++   GCKP++ +Y+ L+ GLC    +  AL+L   MA+  G+   
Sbjct: 146 DRRRTSDAMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGR--- 202

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN--------------- 292
            C  + V YTT+I+GL +EG +DKA  LF  M D+  +PDVVTY+               
Sbjct: 203 -CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDKA 261

Query: 293 --------------------SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
                               SL+HG+C +    EA  +  +M   GV+PDVVT+  +MD 
Sbjct: 262 TQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDY 321

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM--ESMGCK 390
           LCKNGK  EA ++ + ++ RG  P+++T+ TL+ G+   G +    +L   M  + M   
Sbjct: 322 LCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLG 381

Query: 391 HTVFS 395
           H +F+
Sbjct: 382 HHIFN 386



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 150/296 (50%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD ++  R   P  T++  L    A       +  L   +   G+    + +N++
Sbjct: 330 EARKIFDSLVK-RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMI 388

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + K  +V    +V   + +    PD V + +++  LC   R+ +A + F  LK+ G 
Sbjct: 389 MGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGL 448

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++ ++TLI+GLC    T    +  EE+A      G+    +T+ +  I+  LCK+G 
Sbjct: 449 APNIVVFTTLIHGLC----TCDKWDKVEELAFEMIDRGICL--DTIFFNAIMGNLCKKGR 502

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +AK LF  M    I P+  TYN+LI G+C     +EA  LL  M+  GV+P  VT+N 
Sbjct: 503 VIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNT 562

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           I++   +NG++++   LL  M  +GVNP   T+  L+ G    GR   AKEL++ M
Sbjct: 563 IINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN++ G  AK    D  L +F  +   GL PD+  Y  +++  C  GRV         + 
Sbjct: 385 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 444

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V FT+LI GLC   +  +   L  ++   G   + I ++ ++  LC+ G  I
Sbjct: 445 SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVI 504

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A NLF+ M     + G+  +PNT TY T+IDG C +G +D+A +L   M    + P  V
Sbjct: 505 EAKNLFDLMV----RIGI--EPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDV 558

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN++I+G+       +   LL EM  +GV P +VT+ +++  L + G+   A  L   M
Sbjct: 559 TYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 618

Query: 350 I 350
           I
Sbjct: 619 I 619


>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
 gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
          Length = 460

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 107/293 (36%), Positives = 165/293 (56%), Gaps = 8/293 (2%)

Query: 105 PPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P L +FN LL G  +K K  D V  LF  +   G  PD+ TY+ +IN  CKMG  +    
Sbjct: 8   PTLVTFNTLLSGLCSKAKIMDAV-KLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMALQ 66

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L ++      P+ VA+ ++I  LC +  + EA   F+++   G  P+V TYS++++G C
Sbjct: 67  LLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFC 126

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A +LF++M   N        PN VT+T +IDGLCK+  + +A  +F  M +K 
Sbjct: 127 NLGRVNEATSLFKQMVERN------VIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKG 180

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDV TYN+L+ G+C  +  +EA  L   M  +G  P+V ++N++++  CK+G++DEA 
Sbjct: 181 LEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAK 240

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL  M  + + P+  T+STLM GFC  GR   A+EL   M S G    + +Y
Sbjct: 241 GLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITY 293



 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +     +  F  +   G+ PD++TY+ +++ FC +GRV+    +
Sbjct: 78  PNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILHGFCNLGRVNEATSL 137

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ V FT LI GLC +  I EA  +F  +   G +P+V TY+ L++G C 
Sbjct: 138 FKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCS 197

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF  M          C PN  +Y  +I+G CK G +D+AK L  +M  K++
Sbjct: 198 RSQMDEAQKLFNIMDRKG------CAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKSL 251

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+ TY++L+ GFC      EA  LL EM   G+ P+++T+++++D LCK+G +DEA  
Sbjct: 252 TPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFE 311

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M    + PN   ++ L++G C  G++  A+ELF ++   G + TV +Y
Sbjct: 312 LLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTY 363



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 144/260 (55%), Gaps = 6/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P L T+N L++  C   ++     +   +++    PD + ++++I GLC       A
Sbjct: 5   GLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTMA 64

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  K++  GCKPNV+ Y+T+I+ LC+      A++ F EM     K G+   P+  TY
Sbjct: 65  LQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMV----KEGI--PPDVFTY 118

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           ++I+ G C  G V++A  LF QM ++N+ P+ VT+  LI G C     +EA  +   M +
Sbjct: 119 SSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTE 178

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G++PDV T+N ++D  C   +MDEA +L  +M  +G  PN  +++ L++G C +GR++ 
Sbjct: 179 KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDE 238

Query: 377 AKELFVSMESMGCKHTVFSY 396
           AK L   M        +F+Y
Sbjct: 239 AKGLLAEMSHKSLTPDIFTY 258



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F  M+  R   P   +F +L   L K +       +F+ +   GL PD+YTYN 
Sbjct: 132 NEATSLFKQMVE-RNVIPNKVTFTILIDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNA 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C   ++     +   + R    P+  ++  LI G C   RI EA  L  ++    
Sbjct: 191 LVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TYSTL+ G C+ G    A  L +EM +    +G++  PN +TY+ ++DGLCK G
Sbjct: 251 LTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCS----YGLL--PNLITYSIVLDGLCKHG 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A EL   M++  I P++  Y  LI G C       A  L   +  +G+QP VVT+ 
Sbjct: 305 HLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYT 364

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++  L K G  +EA  L   M + G  PN+ T++ ++ GF   G   +A  L   M   
Sbjct: 365 VMISGLLKGGLSNEACELFREMAVNGCLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGK 424

Query: 388 G 388
           G
Sbjct: 425 G 425



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/279 (33%), Positives = 144/279 (51%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +F+ M   +   P + ++N L          D    LF  ++  G  P++ +YNI
Sbjct: 167 SEAWLVFETMTE-KGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNI 225

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK GR+     +L  +     TPD   +++L++G C   R  EA  L  ++ ++G
Sbjct: 226 LINGHCKSGRIDEAKGLLAEMSHKSLTPDIFTYSTLMRGFCQVGRPQEAQELLKEMCSYG 285

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ITYS +++GLC+ GH   A  L + M           +PN   YT +I+G+C  G
Sbjct: 286 LLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESK------IEPNIFIYTILIEGMCTFG 339

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+ELF  +  K I P VVTY  +I G       NEA  L  EM   G  P+  T+N
Sbjct: 340 KLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNGCLPNSCTYN 399

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           VI+    +NG    A RL+E M+ +G + ++STF  L D
Sbjct: 400 VIIQGFLRNGDTPNAVRLIEEMVGKGFSADSSTFRMLSD 438



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   F  M+     PP + +++ +          +   SLFK++    + P+  T+ IL
Sbjct: 98  EAMDFFSEMVK-EGIPPDVFTYSSILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTIL 156

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK   +S  ++V   +      PD   + +L+ G C+ S++ EA  LF  +   GC
Sbjct: 157 IDGLCKKRMISEAWLVFETMTEKGLEPDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGC 216

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV +Y+ LING C++G    A  L  EM++ +        P+  TY+T++ G C+ G 
Sbjct: 217 APNVRSYNILINGHCKSGRIDEAKGLLAEMSHKS------LTPDIFTYSTLMRGFCQVGR 270

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A+EL  +M    + P+++TY+ ++ G C     +EA  LL  M +  ++P++  + +
Sbjct: 271 PQEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTI 330

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ +C  GK++ A  L   + ++G+ P   T++ ++ G    G  N A ELF  M   G
Sbjct: 331 LIEGMCTFGKLEAARELFSNLFVKGIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNG 390

Query: 389 C 389
           C
Sbjct: 391 C 391



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 52/140 (37%), Positives = 83/140 (59%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           F +  +P  VT+ T++ GLC +  +  A +LF +M      PDV+TY+++I+G C   + 
Sbjct: 2   FKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNT 61

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  LL +M ++G +P+VV +N I+D LCK+  + EA      M+  G+ P+  T+S++
Sbjct: 62  TMALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSI 121

Query: 365 MDGFCLTGRVNHAKELFVSM 384
           + GFC  GRVN A  LF  M
Sbjct: 122 LHGFCNLGRVNEATSLFKQM 141



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 47/83 (56%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M   G+QP +VTFN ++  LC   K+ +A +L + M+  G  P+  T+ST+++G C  G 
Sbjct: 1   MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A +L   ME  GCK  V +Y
Sbjct: 61  TTMALQLLKKMEEKGCKPNVVAY 83


>gi|222639781|gb|EEE67913.1| hypothetical protein OsJ_25766 [Oryza sativa Japonica Group]
          Length = 625

 Score =  194 bits (494), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 106/338 (31%), Positives = 175/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +FD ML+  PSP  +T ++ +   L+KT+  D    +F R+   G+ PD   Y  
Sbjct: 225 DKAYSLFDAMLDRGPSPDVVT-YSSIISALSKTQAMDKATQVFTRMVKNGVMPDCIMYTS 283

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C  G+      +  ++ R    PD V +T+L+  LC   +  EA  +F  L   G
Sbjct: 284 LVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMDYLCKNGKSTEARKIFDSLVKRG 343

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGVV-------------- 248
            KP+  TY TL++G    G     H ++ L + + M  G+  F ++              
Sbjct: 344 HKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMIMGAYAKHNKVDEAL 403

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V Y T++D LC  G VD A   F  +K + + P++V + +LIHG 
Sbjct: 404 LVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGLAPNIVVFTTLIHGL 463

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W++   L  EM+D+G+  D + FN IM  LCK G++ EA  L +LM+  G+ PNT
Sbjct: 464 CTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVIEAKNLFDLMVRIGIEPNT 523

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +T++TL+DG+CL G+++ A +L   M   G K +  +Y
Sbjct: 524 NTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTY 561



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 178/366 (48%), Gaps = 50/366 (13%)

Query: 72  ERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK 131
           +R K  G+    A  P +A  +FD +L  R     +   N     +A+       +SLF 
Sbjct: 30  KRTKQGGRQ--RATEPGDAHQVFDRLLK-RGDRASIFDLNRALSDVARASPA-VAISLFN 85

Query: 132 RL---NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG-L 187
           R+    +T   P++ TY I+I C  ++GR+   F  +GR++ +    +     S  +G L
Sbjct: 86  RMPRAGATSAAPNIATYGIVIGCCRRLGRLDLAFATVGRVITTGLRHEPNPLQSSSQGPL 145

Query: 188 C-AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           C A  R M    +  ++   GCKP++ +Y+ L+ GLC    +  AL+L   MA+  G+  
Sbjct: 146 CTAGGRAMRMDIVLRRMPELGCKPDLFSYTILLKGLCDDKTSQQALDLLHIMADHKGR-- 203

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN-------------- 292
             C  + V YTT+I+GL +EG +DKA  LF  M D+  +PDVVTY+              
Sbjct: 204 --CPLDVVAYTTVINGLLREGQLDKAYSLFDAMLDRGPSPDVVTYSSIISALSKTQAMDK 261

Query: 293 ---------------------SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
                                SL+HG+C +    EA  +  +M   GV+PDVVT+  +MD
Sbjct: 262 ATQVFTRMVKNGVMPDCIMYTSLVHGYCSSGKPKEAIGIFKKMCRHGVEPDVVTYTALMD 321

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM--ESMGC 389
            LCKNGK  EA ++ + ++ RG  P+++T+ TL+ G+   G +    +L   M  + M  
Sbjct: 322 YLCKNGKSTEARKIFDSLVKRGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQL 381

Query: 390 KHTVFS 395
            H +F+
Sbjct: 382 GHHIFN 387



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 150/296 (50%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD ++  R   P  T++  L    A       +  L   +   G+    + +N++
Sbjct: 331 EARKIFDSLVK-RGHKPDSTTYGTLLHGYATEGALVEMHDLLDLMMKKGMQLGHHIFNMI 389

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + K  +V    +V   + +    PD V + +++  LC   R+ +A + F  LK+ G 
Sbjct: 390 MGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLKSEGL 449

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++ ++TLI+GLC    T    +  EE+A      G+    +T+ +  I+  LCK+G 
Sbjct: 450 APNIVVFTTLIHGLC----TCDKWDKVEELAFEMIDRGICL--DTIFFNAIMGNLCKKGR 503

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +AK LF  M    I P+  TYN+LI G+C     +EA  LL  M+  GV+P  VT+N 
Sbjct: 504 VIEAKNLFDLMVRIGIEPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDVTYNT 563

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           I++   +NG++++   LL  M  +GVNP   T+  L+ G    GR   AKEL++ M
Sbjct: 564 IINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/241 (31%), Positives = 120/241 (49%), Gaps = 6/241 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN++ G  AK    D  L +F  +   GL PD+  Y  +++  C  GRV         + 
Sbjct: 386 FNMIMGAYAKHNKVDEALLVFSNMRQQGLNPDIVNYGTVLDILCTAGRVDDALSQFNSLK 445

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V FT+LI GLC   +  +   L  ++   G   + I ++ ++  LC+ G  I
Sbjct: 446 SEGLAPNIVVFTTLIHGLCTCDKWDKVEELAFEMIDRGICLDTIFFNAIMGNLCKKGRVI 505

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A NLF+ M     + G+  +PNT TY T+IDG C +G +D+A +L   M    + P  V
Sbjct: 506 EAKNLFDLMV----RIGI--EPNTNTYNTLIDGYCLDGKMDEAMKLLGVMVFNGVKPSDV 559

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN++I+G+       +   LL EM  +GV P +VT+ +++  L + G+   A  L   M
Sbjct: 560 TYNTIINGYSQNGRIEDGLTLLREMDGKGVNPGIVTYEMLLQGLFQAGRTVAAKELYLRM 619

Query: 350 I 350
           I
Sbjct: 620 I 620


>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
 gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
          Length = 757

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 165/292 (56%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN+L   L+KT H    L +   +   G  PD+YTYN LI+  CK+G V     V
Sbjct: 299 PDKYTFNMLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKV 358

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++    +P+ V + ++I  LC E+++ EA  L   L   G  P+V TY++LI GLC 
Sbjct: 359 LNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCL 418

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           + +  VA+ L++EM          C P+  TY  +ID LC  G + +A  L  +M+    
Sbjct: 419 SRNHTVAMELYKEMKTKG------CHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGC 472

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +V+TYN+LI GFC      EA  +  +M  QGV  + VT+N ++D LCK+ +++EAS+
Sbjct: 473 ARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCKSERVEEASQ 532

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ MI+ G+ P+  T+++L+  FC  G +  A ++  +M S GC+  + +Y
Sbjct: 533 LMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDIVTY 584



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 157/332 (47%), Gaps = 42/332 (12%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG---- 156
           R   P +++FN+L   L +       + L + +   GL PD  T+  ++  F + G    
Sbjct: 189 RGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDG 248

Query: 157 --RVSH-------------------GFVVLGRI-----------LRSCFTPDAVAFTSLI 184
             RV                     GF   GRI           LR  F PD   F  L+
Sbjct: 249 AMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFNMLV 308

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            GL     +  A  +   +   G  P++ TY++LI+GLC+ G    A+ +  +M   +  
Sbjct: 309 NGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIERD-- 366

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
               C PNTVTY TII  LCKE  V++A +L L +  K I PDV TYNSLI G C + + 
Sbjct: 367 ----CSPNTVTYNTIISTLCKENQVEEATKLALVLTGKGILPDVCTYNSLIQGLCLSRNH 422

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  L  EM  +G  PD  T+N+++D LC  GK+ EA  LL+ M + G   N  T++TL
Sbjct: 423 TVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNLLKEMEVSGCARNVITYNTL 482

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DGFC   R+  A+E+F  ME  G      +Y
Sbjct: 483 IDGFCKNKRIAEAEEIFDQMELQGVSRNSVTY 514



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 76/268 (28%), Positives = 131/268 (48%), Gaps = 6/268 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L  ++++   + L+K + + G  PD +TYN+LI+  C  G++     +
Sbjct: 404 PDVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALNL 463

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S    + + + +LI G C   RI EA  +F +++  G   N +TY+TLI+GLC+
Sbjct: 464 LKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMELQGVSRNSVTYNTLIDGLCK 523

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L ++M           +P+  TY +++   CK G + KA ++   M     
Sbjct: 524 SERVEEASQLMDQMIMEG------LRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGC 577

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY +LI G C A     A  LL  +  +G+      +N ++  L +  +  EA R
Sbjct: 578 EPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHAYNPVIQALFRRKRSKEAVR 637

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTG 372
           L   MI +   P+  T+  +  G C  G
Sbjct: 638 LFREMIEKAEAPDAVTYKIVFRGLCQGG 665



 Score = 67.0 bits (162), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 2/141 (1%)

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           +FGVV   NT  Y  +++ L     +   +     M  + I PDV T+N LI   C A+ 
Sbjct: 153 EFGVVA--NTHFYNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQ 210

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
              A  L+ EM D G+ PD  TF  IM    + G +D A R+ E M+  G      T + 
Sbjct: 211 IRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGCVVTNVTVNV 270

Query: 364 LMDGFCLTGRVNHAKELFVSM 384
           L++GFC  GR+  A      M
Sbjct: 271 LVNGFCKEGRIEEALRFIEEM 291



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 105/265 (39%), Gaps = 47/265 (17%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M     S   +T +N L   L K++  +    L  ++   GL PD +TYN L
Sbjct: 494 EAEEIFDQMELQGVSRNSVT-YNTLIDGLCKSERVEEASQLMDQMIMEGLRPDKFTYNSL 552

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI--------------- 193
           +  FCK G +     ++  +      PD V + +LI GLC   R+               
Sbjct: 553 LTYFCKAGDIKKAADIVQTMASDGCEPDIVTYGTLIAGLCKAGRVEAATKLLRTIQMKGI 612

Query: 194 --------------------MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VAL 232
                                EA  LF ++      P+ +TY  +  GLC+ G  I  A+
Sbjct: 613 NLTPHAYNPVIQALFRRKRSKEAVRLFREMIEKAEAPDAVTYKIVFRGLCQGGGPIGEAV 672

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF-LQMKDKNINPDVVTY 291
           +   EM     + G V  P   ++  + +GL     V    +L  + M+    + + VT 
Sbjct: 673 DFVMEML----ERGYV--PEFSSFYMLAEGLFSLAMVGTLIKLIDMVMEKAKFSDNEVT- 725

Query: 292 NSLIHGFCYANDWNEANCLLIEMMD 316
             +I GF   + + +A   L  ++D
Sbjct: 726 --MIRGFLKISKYQDALATLGGILD 748



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 48/219 (21%)

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN  T + L++ L R   +   ++LF   A+    F    KP++  +  ++  L K G  
Sbjct: 52  PN-FTPTQLLHSLRREEDSSAVIHLFY-WASKQPNF----KPSSSIFKEVLHKLGKAGEF 105

Query: 270 DKAKELFLQMKDKNINPDVVTYNSL---IHGFCYANDWNEA------------------- 307
           D  K++  +MK   I+  V+  +SL   I  +     +NE                    
Sbjct: 106 DAMKDILKEMK---ISLSVIDNDSLLVFIESYASFGLYNEILQFVDAMEVEFGVVANTHF 162

Query: 308 -----NCL-------LIE-----MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
                N L       L+E     M+ +G++PDV TFN+++  LC+  ++  A  L+E M 
Sbjct: 163 YNFLLNVLVDGNKLKLVEIAHSNMVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEME 222

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             G+ P+  TF+T+M GF   G ++ A  +   M   GC
Sbjct: 223 DFGLLPDEKTFTTIMQGFIEEGNLDGAMRVKEQMVEAGC 261


>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
          Length = 851

 Score =  194 bits (493), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 162/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    D    L K ++S G+ P+L +YN++IN  C+ G +   + +
Sbjct: 43  PNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEI 102

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +    FTPD V + +L+ G C E    +A  +  ++   G  P+V+TY+ LIN +C+
Sbjct: 103 LEEMGYKGFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCK 162

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A+  F++M           +PN  TYTT+IDG  ++G +++A  +  +M +   
Sbjct: 163 ARNLNRAMEFFDQMRIRG------LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGF 216

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P VVTYN+ IHG C      EA  ++ EM+++G+ PDVV+++ I+   C+ G++D A +
Sbjct: 217 SPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQ 276

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M+ +GV+P+  T+S+L+ G C   R+  A +L   M  MG     F+Y
Sbjct: 277 MKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDEFTY 328



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/326 (29%), Positives = 156/326 (47%), Gaps = 30/326 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +   M + +   P L S+N++   L +         + + +   G  PD  TYN 
Sbjct: 62  DEAFGLLKSM-SSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVTYNT 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK G      V+   ++R+  +P  V +T+LI  +C    +  A   F +++  G
Sbjct: 121 LLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFDQMRIRG 180

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN----------------------GKF 245
            +PN  TY+TLI+G  R G    A  +  EM                             
Sbjct: 181 LRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEAL 240

Query: 246 GVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           GVV +       P+ V+Y+TII G C++G +D+A ++  +M +K ++PD VTY+SLI G 
Sbjct: 241 GVVQEMVEKGLAPDVVSYSTIISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGL 300

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C      EA  L  EM+D G+ PD  T+  +++  C  G +++A  L + MI +G  P+ 
Sbjct: 301 CEMRRLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDA 360

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
            T+S L++G     R   AK L   +
Sbjct: 361 VTYSVLINGLNKQARTREAKRLLFKL 386



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/312 (30%), Positives = 162/312 (51%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I   M+    SP  +T +  L   + K ++ +  +  F ++   GL P+  TY  
Sbjct: 132 HQALVIHAEMVRNGVSPSVVT-YTALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTT 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F + G ++  + +L  +  S F+P  V + + I G C   R+ EA  +  ++   G
Sbjct: 191 LIDGFSRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKG 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V++YST+I+G CR G    A  + +EM     + GV   P+ VTY+++I GLC+  
Sbjct: 251 LAPDVVSYSTIISGFCRKGELDRAFQMKQEMV----EKGV--SPDAVTYSSLIQGLCEMR 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +L  +M D  + PD  TY +LI+ +C   D N+A  L  EM+ +G  PD VT++
Sbjct: 305 RLTEACDLSQEMLDMGLPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKGFLPDAVTYS 364

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD---------------GFCLTG 372
           V+++ L K  +  EA RLL  +I     P+  T+ TL++               GFC+ G
Sbjct: 365 VLINGLNKQARTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKG 424

Query: 373 RVNHAKELFVSM 384
            ++ A  +F SM
Sbjct: 425 LMHEADRVFESM 436



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/229 (33%), Positives = 131/229 (57%), Gaps = 6/229 (2%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++RS  +P+   +  LI+G C+   + +    F +++  GC PNV+TY+TLI+  C+ G 
Sbjct: 1   MIRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLPNVVTYNTLIDAYCKMGR 60

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  L + M++         +PN ++Y  II+GLC+EG + +A E+  +M  K   PD
Sbjct: 61  IDEAFGLLKSMSSKG------MQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPD 114

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTYN+L++G+C   ++++A  +  EM+  GV P VVT+  +++ +CK   ++ A    +
Sbjct: 115 EVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTYTALINSMCKARNLNRAMEFFD 174

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M +RG+ PN  T++TL+DGF   G +N A  +   M   G   +V +Y
Sbjct: 175 QMRIRGLRPNERTYTTLIDGFSRQGLLNEAYRILNEMTESGFSPSVVTY 223



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 145/293 (49%), Gaps = 22/293 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+ I + M     SP  +T +N         +  +  L + + +   GL PD+ +Y+ 
Sbjct: 202 NEAYRILNEMTESGFSPSVVT-YNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYST 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FC+ G +   F +   ++    +PDAV ++SLI+GLC   R+ EA  L  ++   G
Sbjct: 261 IISGFCRKGELDRAFQMKQEMVEKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMG 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY+TLIN  C  G    AL+L +EM +          P+ VTY+ +I+GL K+ 
Sbjct: 321 LPPDEFTYTTLINAYCVEGDLNKALHLHDEMIHKG------FLPDAVTYSVLINGLNKQA 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH---------------GFCYANDWNEANCLLI 312
              +AK L  ++  +   P  VTY++LI                GFC     +EA+ +  
Sbjct: 375 RTREAKRLLFKLIYEESVPSDVTYDTLIENCSNIEFKSVVALIKGFCMKGLMHEADRVFE 434

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            M+++  +P    +NVI+   C+ G + +A  L + MI  G  P+T T  TL+
Sbjct: 435 SMVERNHKPGEAVYNVIIHGHCRGGNLPKAFNLYKEMIHSGFVPHTVTVITLI 487


>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 504

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 108/350 (30%), Positives = 188/350 (53%), Gaps = 42/350 (12%)

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           I  +  +++  +F +M+  RP  P +  F+ L   ++K K YD V+ L++++   G+  +
Sbjct: 57  IRYMKLDDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHN 115

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           L T NIL+NCFC+  ++S     LG++++    PD V F SL+ G C   RI +A  +F 
Sbjct: 116 LCTCNILLNCFCRCSQLSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFD 175

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G +PNV+ Y+T+I+GLC++     AL+L   M           +P+ VTY ++I 
Sbjct: 176 RMVEMGYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDG------IRPDAVTYNSLIS 229

Query: 262 GLC-----------------------------------KEGFVDKAKELFLQMKDKNINP 286
           GLC                                   KEG + +A+EL+ +M  ++++P
Sbjct: 230 GLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSLDP 289

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTY+ LI+G C  +  +EA  +   M+ +G  PDVVT++++++  CK+ K++   +L 
Sbjct: 290 DIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLF 349

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  RGV  NT T++ L+ G+C  G++N A+E+F  M   G    + +Y
Sbjct: 350 CEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITY 399



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 156/284 (54%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L  +  +D    +   +    ++PD++T+N LI+   K GR+S    +
Sbjct: 219 PDAVTYNSLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEEL 278

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    PD V ++ LI GLC  SR+ EA  +F  + + GC P+V+TYS LING C+
Sbjct: 279 YEEMIRRSLDPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKGCFPDVVTYSILINGYCK 338

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +      + LF EM+    + GVV   NTVTYT +I G C+ G ++ A+E+F  M    +
Sbjct: 339 SKKVEHGMKLFCEMS----QRGVV--RNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGV 392

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+++TYN L+HG C      +A  +L +M   G+  D+VT+N+I+  +CK G++ +A  
Sbjct: 393 PPNIITYNVLLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWD 452

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   + L+G+ P+  T++ +M G    G    A  LF  M+  G
Sbjct: 453 LYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADALFRKMKEDG 496



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+ M    P +  +N +   L K+K  D  L L  R+   G+ PD  TYN L
Sbjct: 169 DALYMFDRMVEM-GYEPNVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSL 227

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  GR      ++  + +    PD   F +LI     E RI EA  L+ ++     
Sbjct: 228 ISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRRSL 287

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++TYS LI GLC       A  +F  M +        C P+ VTY+ +I+G CK   
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEQMFGFMVSKG------CFPDVVTYSILINGYCKSKK 341

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF +M  + +  + VTY  LI G+C A   N A  +   M+  GV P+++T+NV
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVAEEIFKWMVFCGVPPNIITYNV 401

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC NGK+++A  +L  M   G++ +  T++ ++ G C  G V  A +L+ S+   G
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKSGMDADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKG 461

Query: 389 CKHTVFSY 396
               +++Y
Sbjct: 462 LTPDIWTY 469



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 64/133 (48%), Gaps = 1/133 (0%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A   N A  IF +M+     PP + ++N+L   L      +  L +   +  +G+
Sbjct: 369 QGYCRAGKLNVAEEIFKWMV-FCGVPPNIITYNVLLHGLCDNGKIEKALVILADMQKSGM 427

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             D+ TYNI+I   CK G V+  + +   +     TPD   +T+++ GL  +    EA A
Sbjct: 428 DADIVTYNIIIRGMCKAGEVADAWDLYCSLNLKGLTPDIWTYTAMMLGLYKKGLRGEADA 487

Query: 199 LFTKLKAFGCKPN 211
           LF K+K  G  PN
Sbjct: 488 LFRKMKEDGILPN 500


>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
 gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
          Length = 737

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 161/296 (54%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++ +L   L K+        + + +   G  P++ TYN LIN FCK+G +  
Sbjct: 230 RNCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 289

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             V+  ++L +  +PD   +  LI G C + R  + A L  ++  +GC+PN ITY+TL++
Sbjct: 290 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 349

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            L ++G  I A NL + M   +      CKP+  T+  +ID  CK G +D A ELF  M 
Sbjct: 350 SLVKSGKYIDAFNLAQMMLRRD------CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 403

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D+   PD+ TYN +I G C AN  ++A  LL  M + G  PDVVT+N I+  LCK  ++D
Sbjct: 404 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 463

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  + E++   G   +  T STL+DG C + R++ A++L   ME  G    V +Y
Sbjct: 464 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 519



 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 166/292 (56%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K+  Y    +L + +      P  +T+N++I+ FCK+G++   + +
Sbjct: 339 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 398

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   +  +I G C  +RI +A  L  ++   GC P+V+TY+++++GLC+
Sbjct: 399 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 458

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  ++E + NG G F      + VT +T+IDGLCK   +D A++L  +M+    
Sbjct: 459 ASQVDEAYEVYEVLRNG-GYF-----LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 512

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV Y  LIHGFC A+  +++     EM+D+G  P V+T+++++D+LCK+ ++ +   
Sbjct: 513 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 572

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M+ RGV P+   +++++DG C +   + A EL+  M+  GC  TV +Y
Sbjct: 573 LLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTY 624



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 111/337 (32%), Positives = 166/337 (49%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +   ML  R   P   +FNL+     K    D    LF+ +   G  PD+YTYNI+
Sbjct: 359 DAFNLAQMMLR-RDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIM 417

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C+  R+     +L R+  +   PD V + S++ GLC  S++ EA  ++  L+  G 
Sbjct: 418 ISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGY 477

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-------------------- 248
             +V+T STLI+GLC++     A  L  EM        VV                    
Sbjct: 478 FLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLA 537

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C P  +TY+ +ID LCK   V     L   M ++ + PD + Y S+I G C
Sbjct: 538 FFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLC 597

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            ++ ++EA  L   M   G  P VVT+NV++D+LCK  ++DEA  LLE+M   G  P+T 
Sbjct: 598 KSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTV 657

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++++ DGF  +   + A  LF +M+S GC  T F Y
Sbjct: 658 TYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMY 694



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 149/286 (52%), Gaps = 7/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L     + K       LFK        PD  TY+ LIN FCK       + +L  + +
Sbjct: 136 NCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 195

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P    + ++IKGLC   R+  A   +  ++   C P+VITY+ L++ LC++     
Sbjct: 196 RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQR-NCAPSVITYTILVDALCKSARISD 254

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  + E+M          C PN VTY T+I+G CK G +D+A  LF QM + + +PDV T
Sbjct: 255 ASLILEDMIEAG------CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 308

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN LI G+C      +   LL EM+  G +P+ +T+N +MD L K+GK  +A  L ++M+
Sbjct: 309 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 368

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            R   P+  TF+ ++D FC  G+++ A ELF  M   GC   +++Y
Sbjct: 369 RRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 414



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 146/294 (49%), Gaps = 8/294 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           SP  +T   L+ G   K + +     L   +   G+ P    YN +I   C  GRV    
Sbjct: 164 SPDSITYSTLING-FCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSAL 222

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           V    + R+C  P  + +T L+  LC  +RI +A+ +   +   GC PNV+TY+TLING 
Sbjct: 223 VHYRDMQRNC-APSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 281

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G+   A+ LF +M   +      C P+  TY  +IDG CK+       +L  +M   
Sbjct: 282 CKLGNMDEAVVLFNQMLENS------CSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKY 335

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+ +TYN+L+     +  + +A  L   M+ +  +P   TFN+++D  CK G++D A
Sbjct: 336 GCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLA 395

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L +LM  RG  P+  T++ ++ G C   R++ A++L   M   GC   V +Y
Sbjct: 396 YELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTY 449



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/278 (33%), Positives = 144/278 (51%), Gaps = 6/278 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++N +   L K    D    +++ L + G F D+ T + LI+  CK  R+     
Sbjct: 443 PPDVVTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEK 502

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  + R+   PD VA+T LI G C   ++ ++ A F+++   GC P VITYS +I+ LC
Sbjct: 503 LLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLC 562

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++        L + M     + GV   P+ + YT++IDGLCK    D+A EL+  MK   
Sbjct: 563 KSARVRDGCMLLKTML----ERGVT--PDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG 616

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P VVTYN L+   C  +  +EA  LL  M   G  PD VT+N + D   K+ + D+A 
Sbjct: 617 CAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAF 676

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           RL + M  RG +P    +S L+       +++ A E++
Sbjct: 677 RLFQAMKSRGCSPTPFMYSLLLTKLVAEEKMDQAMEIW 714



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 130/277 (46%), Gaps = 7/277 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +++ + N       +T   L+ G L K++  D    L + +   G  PD+  Y I
Sbjct: 463 DEAYEVYEVLRNGGYFLDVVTCSTLIDG-LCKSRRLDDAEKLLREMERNGSAPDVVAYTI 521

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK  ++         +L     P  + ++ +I  LC  +R+ +   L   +   G
Sbjct: 522 LIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLERG 581

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ I Y+++I+GLC++     A  L++ M          C P  VTY  ++D LCK  
Sbjct: 582 VTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTG------CAPTVVTYNVLVDKLCKVS 635

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L   M+     PD VTYNS+  GF  + + ++A  L   M  +G  P    ++
Sbjct: 636 RLDEAIHLLEVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMKSRGCSPTPFMYS 695

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +++ +L    KMD+A  + E  +  G + +     TL
Sbjct: 696 LLLTKLVAEEKMDQAMEIWEEALEAGADVDPEISRTL 732



 Score = 86.3 bits (212), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 87/181 (48%), Gaps = 34/181 (18%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K +  T   ++    ++    +A +LF   +    +PD +TY++LI+GFC A D+ +A  
Sbjct: 129 KHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQAYR 188

Query: 310 LLIEMMDQGV----------------------------------QPDVVTFNVIMDELCK 335
           LL EM  +G+                                   P V+T+ +++D LCK
Sbjct: 189 LLDEMEKRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRNCAPSVITYTILVDALCK 248

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           + ++ +AS +LE MI  G  PN  T++TL++GFC  G ++ A  LF  M    C   VF+
Sbjct: 249 SARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 308

Query: 396 Y 396
           Y
Sbjct: 309 Y 309


>gi|91806015|gb|ABE65736.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 360

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 102/297 (34%), Positives = 170/297 (57%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+  RP P  +  F+ L   +AK   +D V+SL +++ + G+  +LYTY+I
Sbjct: 57  DDAIGLFGDMVKSRPFPS-IVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSI 115

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            IN FC+  ++S    +LG++++  + P  V   SL+ G C  +RI EA AL  ++   G
Sbjct: 116 FINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+ +T++TL++GL +      A+ L E M          C+P+ VTY  +I+GLCK G
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG------CQPDLVTYGAVINGLCKRG 229

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A  L  +M+   I  DVV YN++I G C     ++A  L  +M  +G++PDV T+N
Sbjct: 230 EPDLALNLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYN 289

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++  LC  G+  +ASRLL  M+ + +NP+   F+ L+D F   G++  A++L+  M
Sbjct: 290 PLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEM 346



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + G +++S   P  V F+ L+  +   ++     +L  +++  G   N+ TYS  IN  C
Sbjct: 62  LFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYSIFINYFC 121

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R     +AL +  +M     K G    P+ VT  ++++G C    + +A  L  QM +  
Sbjct: 122 RRSQLSLALAILGKMM----KLGY--GPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMG 175

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD VT+ +L+HG    N  +EA  L+  M+ +G QPD+VT+  +++ LCK G+ D A 
Sbjct: 176 YQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLAL 235

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL  M    +  +   ++T++DG C    ++ A +LF  ME+ G K  VF+Y
Sbjct: 236 NLLNKMEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTY 288



 Score = 99.4 bits (246), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 110/215 (51%), Gaps = 6/215 (2%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +L + +  + ++ +A  LF  +      P+++ +S L++ + +     + ++L E+M N 
Sbjct: 45  NLSRKVLQDLKLDDAIGLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQN- 103

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
               G+    N  TY+  I+  C+   +  A  +  +M      P +VT NSL++GFC+ 
Sbjct: 104 ---LGI--SHNLYTYSIFINYFCRRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHG 158

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           N  +EA  L+ +M++ G QPD VTF  ++  L ++ K  EA  L+E M+++G  P+  T+
Sbjct: 159 NRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKGCQPDLVTY 218

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +++G C  G  + A  L   ME    +  V  Y
Sbjct: 219 GAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIY 253



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K KH D    LF ++ + G+ PD++TYN LI+C C  GR S    +L  +L
Sbjct: 253 YNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDML 312

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
                PD V F +LI     E +++EA  L+ ++      P+ +
Sbjct: 313 EKNINPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRSIDPSFV 356



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 1/162 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+ ++   P L ++  +   L K    D  L+L  ++    +  D+  YN 
Sbjct: 197 SEAVALVERMV-VKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNT 255

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK   +   F +  ++      PD   +  LI  LC   R  +A+ L + +    
Sbjct: 256 IIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKN 315

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             P+++ ++ LI+   + G  + A  L++EM   +     VC
Sbjct: 316 INPDLVFFNALIDAFVKEGKLVEAEKLYDEMVKRSIDPSFVC 357


>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
 gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
          Length = 448

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 161/296 (54%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++ +L   L K+        + + +   G  P++ TYN LIN FCK+G +  
Sbjct: 96  RHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDE 155

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             V+  ++L +  +PD   +  LI G C + R  + A L  ++  +GC+PN ITY+TL++
Sbjct: 156 AVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMD 215

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            L ++G  I A NL + M   +      CKP+  T+  +ID  CK G +D A ELF  M 
Sbjct: 216 SLVKSGKYIDAFNLAQMMLRRD------CKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D+   PD+ TYN +I G C AN  ++A  LL  M + G  PDVVT+N I+  LCK  ++D
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVD 329

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  + E++   G   +  T STL+DG C + R++ A++L   ME  G    V +Y
Sbjct: 330 EAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAY 385



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/286 (34%), Positives = 149/286 (52%), Gaps = 7/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L     + K       LFK        PD  TY+ LIN FCK       + +L  + +
Sbjct: 2   NCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEMEK 61

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P    + ++IKGLC   R+  A   +  ++   C P+VITY+ L++ LC++     
Sbjct: 62  RGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARISD 120

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  + E+M          C PN VTY T+I+G CK G +D+A  LF QM + + +PDV T
Sbjct: 121 ASLILEDMIEAG------CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENSCSPDVFT 174

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN LI G+C      +   LL EM+  G +P+ +T+N +MD L K+GK  +A  L ++M+
Sbjct: 175 YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMML 234

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            R   P+  TF+ ++D FC  G+++ A ELF  M   GC   +++Y
Sbjct: 235 RRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTY 280



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 151/309 (48%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA+ +F   L    SP  +T   L+ G   K + +     L   +   G+ P    YN 
Sbjct: 15  QEAYDLFKNHLCGLCSPDSITYSTLING-FCKARDFQQAYRLLDEMEKRGIVPHNAVYNT 73

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I   C  GRV    V    + R C  P  + +T L+  LC  +RI +A+ +   +   G
Sbjct: 74  IIKGLCDNGRVDSALVHYRDMQRHC-APSVITYTILVDALCKSARISDASLILEDMIEAG 132

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+TLING C+ G+   A+ LF +M   +      C P+  TY  +IDG CK+ 
Sbjct: 133 CAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLENS------CSPDVFTYNILIDGYCKQE 186

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
                 +L  +M      P+ +TYN+L+     +  + +A  L   M+ +  +P   TFN
Sbjct: 187 RPQDGAKLLQEMVKYGCEPNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFN 246

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  CK G++D A  L +LM  RG  P+  T++ ++ G C   R++ A++L   M   
Sbjct: 247 LMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEA 306

Query: 388 GCKHTVFSY 396
           GC   V +Y
Sbjct: 307 GCPPDVVTY 315



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/250 (32%), Positives = 142/250 (56%), Gaps = 6/250 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K+  Y    +L + +      P  +T+N++I+ FCK+G++   + +
Sbjct: 205 PNFITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYEL 264

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   +  +I G C  +RI +A  L  ++   GC P+V+TY+++++GLC+
Sbjct: 265 FQLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCK 324

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  ++E + NG G F      + VT +T+IDGLCK   +D A++L  +M+    
Sbjct: 325 ASQVDEAYEVYEVLRNG-GYF-----LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGS 378

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV Y  LIHGFC A+  +++     EM+D+G  P V+T+++++D+LCK+ ++ +   
Sbjct: 379 APDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCM 438

Query: 345 LLELMILRGV 354
           LL+ M+ RGV
Sbjct: 439 LLKTMLERGV 448



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 142/301 (47%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ ML    SP   T +N+L     K +       L + +   G  P+  TYN 
Sbjct: 154 DEAVVLFNQMLENSCSPDVFT-YNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITYNT 212

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K G+    F +   +LR    P    F  +I   C   ++  A  LF  +   G
Sbjct: 213 LMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRG 272

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++ TY+ +I+G CR      A  L E M          C P+ VTY +I+ GLCK  
Sbjct: 273 CLPDIYTYNIMISGACRANRIDDARQLLERMTEAG------CPPDVVTYNSIVSGLCKAS 326

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A E++  +++     DVVT ++LI G C +   ++A  LL EM   G  PDVV + 
Sbjct: 327 QVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYT 386

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++   CK  ++D++      M+ +G  P   T+S ++D  C + RV     L  +M   
Sbjct: 387 ILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTMLER 446

Query: 388 G 388
           G
Sbjct: 447 G 447


>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
 gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
          Length = 659

 Score =  193 bits (491), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 163/321 (50%), Gaps = 35/321 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K    + V  L + +   G  PD ++YN ++ C C+ G+      +
Sbjct: 195 PDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKI 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     PD V + SL+ G C  S++ EA  L   +    C P VITY+TLI G  R
Sbjct: 255 LEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSR 314

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + E+M      F     P+ VTY  ++DGLCK G +++A EL   M +K+ 
Sbjct: 315 ADRLADAYRVMEDM------FKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDC 368

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+ L++G C     ++A  LL  M+++G QP++VTFN ++D  CK GK+DE  +
Sbjct: 369 APDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHK 428

Query: 345 LLELM-----------------------------ILRGVNPNTSTFSTLMDGFCLTGRVN 375
           +LELM                              + G++P+ +++S++++G C TG+V 
Sbjct: 429 VLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVE 488

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A+E+   M   GC  T   Y
Sbjct: 489 EAQEVMDLMTKQGCPPTSSHY 509



 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +   ML     P  +T  +L+ GC  +T   D    L +++  +GL PD   YN L+N  
Sbjct: 149 VLKMMLERSCVPDVITYTSLIVGC-CQTNALDEARKLMEKMKESGLTPDTVAYNALLNGL 207

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  ++     +L  ++ +   PD  ++ +++  LC   +  EA  +  K+    C P+V
Sbjct: 208 CKQNQLEEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDV 267

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY++L++G C+      A  L E+M       G  C P  +TYTT+I G  +   +  A
Sbjct: 268 VTYNSLMDGFCKVSKMDEAERLLEDMV------GRRCAPTVITYTTLIGGFSRADRLADA 321

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +   M    I+PD+VTYN L+ G C A    EA+ LL  M+++   PDVVT++++++ 
Sbjct: 322 YRVMEDMFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNG 381

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK GK+D+A  LLE+M+ RG  PN  TF+T++DGFC  G+V+   ++   M+ + C   
Sbjct: 382 LCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPD 441

Query: 393 VFSY 396
           V +Y
Sbjct: 442 VVTY 445



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/313 (30%), Positives = 166/313 (53%), Gaps = 11/313 (3%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           + P E +  F    +  PS P  +++  L    ++  +   VL +   + +    PD+ T
Sbjct: 3   VRPLEGYSFFRERFS-DPSKPSNSTYGALITGFSRAGNSKMVLEIANEMLARRFSPDVIT 61

Query: 145 YNILINCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           +N ++  +C++G +        G++  S   P A  +  LI GLC   RI EA  L  ++
Sbjct: 62  HNTILKAYCQIGDLDRALSHFRGKMWCS---PTAFTYCILIHGLCQCQRIDEAYQLLDEM 118

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
               C P+   Y+ LI GLC+ G    A N+ + M   +      C P+ +TYT++I G 
Sbjct: 119 IQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERS------CVPDVITYTSLIVGC 172

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C+   +D+A++L  +MK+  + PD V YN+L++G C  N   E + LL EM++ G +PD 
Sbjct: 173 CQTNALDEARKLMEKMKESGLTPDTVAYNALLNGLCKQNQLEEVSKLLEEMVEAGREPDT 232

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            ++N ++  LC++GK +EA ++LE MI +   P+  T+++LMDGFC   +++ A+ L   
Sbjct: 233 FSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVSKMDEAERLLED 292

Query: 384 MESMGCKHTVFSY 396
           M    C  TV +Y
Sbjct: 293 MVGRRCAPTVITY 305



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 157/292 (53%), Gaps = 12/292 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L K    +    L + +      PD+ TY+IL+N  CK+G+V    ++
Sbjct: 335 PDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLL 394

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+ V F ++I G C   ++ E   +   +K   C P+V+TYSTLI+G C+
Sbjct: 395 LEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCK 454

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                        M +     G+   P+  +Y+++++GLC  G V++A+E+   M  +  
Sbjct: 455 ANR----------MQDAFAILGI--SPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC 502

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P    Y  +I G C     +EA  +L  M ++G +P++ T++++++ LCK  ++++A  
Sbjct: 503 PPTSSHYALIIGGLCDVERGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAIN 562

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L++M+ +G  P+ +T+++L+DGFC   +++ A + F +M   GC+    +Y
Sbjct: 563 VLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAY 614



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 149/281 (53%), Gaps = 19/281 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT---VLSLFKRLNSTGLFPDLYT 144
           ++A  + + ML  R   P L +FN +     K    D    VL L K ++ T   PD+ T
Sbjct: 389 DDARLLLEMMLE-RGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCT---PDVVT 444

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           Y+ LI+ +CK  R+   F +LG       +PD  +++S+++GLC+  ++ EA  +   + 
Sbjct: 445 YSTLIDGYCKANRMQDAFAILG------ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMT 498

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC P    Y+ +I GLC       AL + + M+         C+PN  TY+ +I+GLC
Sbjct: 499 KQGCPPTSSHYALIIGGLCDVERGDEALKMLQVMSERG------CEPNLYTYSILINGLC 552

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K   V+ A  +   M +K   PDV TY SLI GFC  N  + A      M D G +PD +
Sbjct: 553 KTKRVEDAINVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKL 612

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            +N+++   C++G +++A  +++LM+ +G NP+ +T+ +LM
Sbjct: 613 AYNILISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLM 653



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 151/309 (48%), Gaps = 13/309 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M+  +   P + ++++L   L K    D    L + +   G  P+L T+N 
Sbjct: 354 EEAHELLEVMVE-KDCAPDVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNT 412

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G+V  G  VL  +     TPD V +++LI G C  +R+ +A A+       G
Sbjct: 413 MIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL------G 466

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +YS+++ GLC TG    A  + + M          C P +  Y  II GLC   
Sbjct: 467 ISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQG------CPPTSSHYALIIGGLCDVE 520

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A ++   M ++   P++ TY+ LI+G C      +A  +L  M+++G  PDV T+ 
Sbjct: 521 RGDEALKMLQVMSERGCEPNLYTYSILINGLCKTKRVEDAINVLDVMLEKGCVPDVATYT 580

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK  KMD A +  + M   G  P+   ++ L+ GFC +G V  A E+   M   
Sbjct: 581 SLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEK 640

Query: 388 GCKHTVFSY 396
           GC     +Y
Sbjct: 641 GCNPDAATY 649



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 31/103 (30%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  + D ML  +   P + ++  L     K    D     FK +  +G  PD   YNI
Sbjct: 558 EDAINVLDVMLE-KGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNI 616

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           LI+ FC+ G V     V+  +L     PDA  + SL++ L  E
Sbjct: 617 LISGFCQSGNVEKAIEVMQLMLEKGCNPDAATYFSLMRSLTTE 659


>gi|41152686|dbj|BAD08211.1| hypothetical protein [Oryza sativa Indica Group]
 gi|67906118|dbj|BAE00069.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 174/347 (50%), Gaps = 35/347 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++A+  +  ML+ R   P + ++N +   L K +  D  + +   +   G+
Sbjct: 212 EGDL-----DKAYGTYHEMLD-RGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN +++ +C  G+       L ++      PD V + SL+  LC   R  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------G 243
           +F  +   G KP + TY TL+ G    G  +    L + M                    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 244 KFGVVCK--------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           K G V +              P+TVTY T+I  LCK G V+ A   F QM D+ ++P  +
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YNSLIH  C  + W++A  L++EM+D+G+  D + FN I+D  CK G++ E+ +L +LM
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  GV PN  T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 506 VRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552



 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/312 (36%), Positives = 169/312 (54%), Gaps = 10/312 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P+L TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI   C  GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L + M +  G     C P+ V+YTT+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG +DKA   + +M D+ I P+VVTYNS+I   C A   ++A  +L  M+  GV P+  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYNSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR   A+++F SM
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 331 TKRGLKPEITTY 342



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/323 (29%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C  + QG +     ++A  +F  M     +P  +T +  + G L K+   +  +  F+++
Sbjct: 382 CAYAKQGKV-----DQAMLVFSKMRQQGLNPDTVT-YGTVIGILCKSGRVEDAMRYFEQM 435

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
               L P    YN LI+  C   +      ++  +L      D + F S+I   C E R+
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           +E+  LF  +   G KPN+ITYSTLI+G C  G    A  L   M +      V  KP+ 
Sbjct: 496 IESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVS------VGMKPDC 549

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY T+I+G CK   ++ A  LF +M+   ++PD++TYN ++ G         A  L + 
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           + + G Q ++ T+N+I+  LCKN   DEA R+ + + L  +   T TF+ ++      GR
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LF ++ + G    V +Y
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTY 692



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G+V    +V  ++ +    PD V + ++I  LC   R+ +A   F ++     
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  I Y++LI+ LC       A  L  EM +       +C  +T+ + +IID  CKEG 
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG-----IC-LDTIFFNSIIDSHCKEGR 494

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + P+++TY++LI G+C A   +EA  LL  M+  G++PD VT+N 
Sbjct: 495 VIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  CK  +M++A  L   M   GV+P+  T++ ++ G   T R   AKEL+V +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 615 TQLELSTY 622



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ M++ R SP  +  +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GRV     +   ++R    P+ + +++LI G C   ++ EA  L   + + G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+TLING C+      AL LF EM +     GV   P+ +TY  I+ GL +   
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKEL++ + +     ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN+
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+ DEA  L   +   G+ P+  T+S + +     G +    +LF+SME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 389 C 389
           C
Sbjct: 720 C 720



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 67  EQFLKERCKSSGQGDITAITPNEAFCIFD-------YMLNMRPSPPPLTS--FNLLFGCL 117
           EQ + ER      G+I   +   + CIFD        +L M      L +  FN +    
Sbjct: 433 EQMIDERLSP---GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
            K         LF  +   G+ P++ TY+ LI+ +C  G++     +L  ++     PD 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPNIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V + +LI G C  SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +     +          TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I  
Sbjct: 610 ITESGTQL------ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 663

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                  +EA  L   +   G+ PDV T++++ + L + G ++E   L   M   G   N
Sbjct: 664 LLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTAN 723

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           +   ++++      G +  A
Sbjct: 724 SRMLNSIVRKLLQRGDITRA 743



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 497 ESEKLFDLMVRIGVKPNIITYSTLIDGYCLAG--KMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 668

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF  +    + PDV TY+ +           E + L + M + G   +    N
Sbjct: 669 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLN 728

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ +L + G +  A   L ++  +  +   ST S  +D
Sbjct: 729 SIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|115474441|ref|NP_001060817.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|42408384|dbj|BAD09535.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113622786|dbj|BAF22731.1| Os08g0110200 [Oryza sativa Japonica Group]
 gi|125601950|gb|EAZ41275.1| hypothetical protein OsJ_25782 [Oryza sativa Japonica Group]
          Length = 798

 Score =  193 bits (490), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 101/274 (36%), Positives = 161/274 (58%), Gaps = 9/274 (3%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
             LSLF R+       DL TY+I+I C  + G +   F  LGR++R+ +T  A+ F+ L+
Sbjct: 83  VALSLFNRMPRA----DLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLL 138

Query: 185 KGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           KGLC + R  +A  +   ++ A GC PN  +Y+ L+ GLC    +  AL+L   M   + 
Sbjct: 139 KGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDT 198

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           + G  C P+ V+YTT+I+GL +EG +DKA  LF +M D+ ++P+ +TYN L+HG+C +  
Sbjct: 199 RGG--CPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGK 256

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  +  +M   GV+PDVVT+N +M  LCKNG+  EA ++ + M+ +G  P++S + T
Sbjct: 257 PKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGT 316

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCK--HTVFS 395
           L+ G+   G +    +L   M   G +  H +F+
Sbjct: 317 LLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFN 350



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 112/373 (30%), Positives = 180/373 (48%), Gaps = 65/373 (17%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+C+FD ML+   SP  +T   LL G  +  K  + +  +F+++   G+ PD+ TYN 
Sbjct: 223 DKAYCLFDEMLDQGMSPNCITYNCLLHGYCSSGKPKEAI-GIFRKMCRDGVEPDVVTYNT 281

Query: 148 LINCFCKMGR-------------------------VSHGFVVLGRIL----------RSC 172
           L+   CK GR                         + HG+   G ++          R+ 
Sbjct: 282 LMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIYGTLLHGYATEGYLVQMHQLLDVMVRNG 341

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD   F  LI        + EA   F+K++  G  PN++TY T+++ LCR G    A+
Sbjct: 342 TQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAM 401

Query: 233 NLFEEM-ANGNGKFGVVCK----------------------------PNTVTYTTIIDGL 263
           + F+ + + G    GVV +                            PNT+ + T+++ L
Sbjct: 402 SQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHL 461

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CKEG V +AK +F  M   ++  DV+TY +LI G+C     +EA  LL  M+  GV+P+ 
Sbjct: 462 CKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNE 521

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT+N I++  CKNG++++A  L   M  +GVNP    +ST++ G   T R+  AKEL++ 
Sbjct: 522 VTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLW 581

Query: 384 MESMGCKHTVFSY 396
           M   G K  + +Y
Sbjct: 582 MIKCGIKLPIGTY 594



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 157/323 (48%), Gaps = 29/323 (8%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P    FN+L G  AK    D  +  F ++   GL P++ TY  +++  C++G+V    
Sbjct: 342 TQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQQGLHPNIVTYGTVMDALCRVGKVDDAM 401

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
               R++    TP+ V F +LI GLCA  +  +A  L  ++   G  PN I ++TL+N L
Sbjct: 402 SQFDRLISEGLTPNGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPNTIFFNTLLNHL 461

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVV-----------------------------CKPNT 253
           C+ G    A N+F+ M   + +  V+                              KPN 
Sbjct: 462 CKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDGVKPNE 521

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY TII+G CK G ++ A  LF QM  K +NP +V Y++++HG         A  L + 
Sbjct: 522 VTYNTIINGYCKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLW 581

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+  G++  + T+N+I+  LC+N   D+A R+   + L   +    TF+ ++D     GR
Sbjct: 582 MIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFNIMIDALLKGGR 641

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LF S+ + G    V +Y
Sbjct: 642 HDEAKDLFASLLARGLVPNVVTY 664



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 159/337 (47%), Gaps = 39/337 (11%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +P  A  +F+ M         L +++++ GC ++  H D   +   R+  TG      T+
Sbjct: 80  SPAVALSLFNRM-----PRADLCTYSIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITF 134

Query: 146 NILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           + L+   C   R S    + L R+     TP+A ++  L+KGLC E+R  +A  L   + 
Sbjct: 135 SPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMM 194

Query: 205 A----FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------ 242
           A     GC P+V++Y+T+INGL R G    A  LF+EM +                    
Sbjct: 195 ADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITYNCLLHGYCSS 254

Query: 243 -------GKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
                  G F  +C+    P+ VTY T++  LCK G   +A+++F  M  K   PD   Y
Sbjct: 255 GKPKEAIGIFRKMCRDGVEPDVVTYNTLMVYLCKNGRSMEARKVFDSMVKKGHKPDSSIY 314

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            +L+HG+       + + LL  M+  G QPD   FN+++    K+G +DEA      M  
Sbjct: 315 GTLLHGYATEGYLVQMHQLLDVMVRNGTQPDHYIFNILIGAYAKHGMVDEAMLAFSKMRQ 374

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +G++PN  T+ T+MD  C  G+V+ A   F  + S G
Sbjct: 375 QGLHPNIVTYGTVMDALCRVGKVDDAMSQFDRLISEG 411



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 129/285 (45%), Gaps = 42/285 (14%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   FD +++   +P  +    L+ G  A  K +D    L   +   G+ P+   +N 
Sbjct: 398 DDAMSQFDRLISEGLTPNGVVFRTLIHGLCACDK-WDKAEELAVEMIGRGICPNTIFFNT 456

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  CK G V+    +   ++R     D + +T+LI G C + ++ EA  L   +   G
Sbjct: 457 LLNHLCKEGMVTRAKNIFDLMVRVDVQCDVITYTTLIDGYCLDGKVDEATKLLEGMVLDG 516

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN +TY+T+ING C+ G    A +LF +MA+     GV   P  V Y+TI+ GL +  
Sbjct: 517 VKPNEVTYNTIINGYCKNGRIEDACSLFRQMASK----GV--NPGIVIYSTILHGLFQTR 570

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN------------------------- 302
            +  AKEL+L M    I   + TYN ++ G C  N                         
Sbjct: 571 RIAAAKELYLWMIKCGIKLPIGTYNIILQGLCQNNCTDDALRMFHNLCLIDFHLQNRTFN 630

Query: 303 ----------DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
                       +EA  L   ++ +G+ P+VVT+ ++M  L + G
Sbjct: 631 IMIDALLKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQG 675



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 65/254 (25%), Positives = 114/254 (44%), Gaps = 7/254 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M+ +      +T   L+ G     K  D    L + +   G+ P+  TYN +IN +
Sbjct: 473 IFDLMVRVDVQCDVITYTTLIDGYCLDGK-VDEATKLLEGMVLDGVKPNEVTYNTIINGY 531

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     +  ++      P  V +++++ GL    RI  A  L+  +   G K  +
Sbjct: 532 CKNGRIEDACSLFRQMASKGVNPGIVIYSTILHGLFQTRRIAAAKELYLWMIKCGIKLPI 591

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+ ++ GLC+   T  AL +F  +   +            T+  +ID L K G  D+A
Sbjct: 592 GTYNIILQGLCQNNCTDDALRMFHNLCLIDFHL------QNRTFNIMIDALLKGGRHDEA 645

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           K+LF  +  + + P+VVTY  ++          E + L + +   G   D    N ++ +
Sbjct: 646 KDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTADSRMLNALVGK 705

Query: 333 LCKNGKMDEASRLL 346
           L + G++ +A   L
Sbjct: 706 LPQKGEVRKAGVYL 719



 Score = 80.9 bits (198), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 17/228 (7%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAAL--FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           D  +   L   L A +R   A AL  F ++     + ++ TYS +I    R GH  +A  
Sbjct: 62  DTTSIFDLNSALSAVARESPAVALSLFNRMP----RADLCTYSIVIGCCSRAGHLDLAFA 117

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ-MKDKNINPDVVTYN 292
               +               +T++ ++ GLC +     A ++ L+ M      P+  +YN
Sbjct: 118 ALGRVIRTG------WTAQAITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYN 171

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQ----GVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            L+ G C  N   +A  LL  MM      G  PDVV++  +++ L + G++D+A  L + 
Sbjct: 172 ILLKGLCDENRSQQALHLLHTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDE 231

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ +G++PN  T++ L+ G+C +G+   A  +F  M   G +  V +Y
Sbjct: 232 MLDQGMSPNCITYNCLLHGYCSSGKPKEAIGIFRKMCRDGVEPDVVTY 279


>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
 gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
          Length = 1056

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 100/245 (40%), Positives = 140/245 (57%), Gaps = 6/245 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P L TYN L+    K G V     +L  ++ S  +PD + F S++ GLC E RI++A  +
Sbjct: 471 PTLVTYNTLVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNV 530

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F +    GC+PNV+TYSTLI+GL +      AL L  +M        + C+ NTVTY+T+
Sbjct: 531 FKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVE------LGCRANTVTYSTV 584

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +DGL K G ++ A  +  QM+D    PD VTYN+LI GF       EA  LL EM++ G 
Sbjct: 585 VDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREMLEAGF 644

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P VVT+  +   LC++G+ DEA  +L+ M  RG  PN  T+S+++DG C  GRV  A  
Sbjct: 645 HPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALG 704

Query: 380 LFVSM 384
            F  M
Sbjct: 705 YFEKM 709



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 112/360 (31%), Positives = 180/360 (50%), Gaps = 38/360 (10%)

Query: 67  EQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTV 126
           EQ L+   +SS    I   +P   F      L ++   P L ++N L   L+K+      
Sbjct: 441 EQMLEREWRSSSSWPIH--SPEVDF------LMVQVCRPTLVTYNTLVTGLSKSGMVRDA 492

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L L + +  +GL PD+ T+N +++  CK  R+     V  R L     P+ V +++LI G
Sbjct: 493 LGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDG 552

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----- 241
           L   +++ EA  L  K+   GC+ N +TYST+++GL + G    A+ +  +M +      
Sbjct: 553 LSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPD 612

Query: 242 --------NGKF---------GVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFL 277
                   +G F         G++ +       P+ VTYTT+  GLC+ G  D+A E+  
Sbjct: 613 AVTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILD 672

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKN 336
            M  +   P+ +TY+S++ G C A    EA     +M  D+ V P V+ ++ ++D LCK 
Sbjct: 673 YMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDEVVAPHVIAYSALIDGLCKA 732

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++DEA   LE MI  G  P+  TFS L++G C  GR++   ELF  M   GCK  +++Y
Sbjct: 733 GRIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAY 792



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 161/318 (50%), Gaps = 19/318 (5%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +L   P  P +  FN L   L + +  D    LF  +  +G   D+ TYNIL+   CK+ 
Sbjct: 300 LLKAMPCVPNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLR 359

Query: 157 RVSHGF--VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVI 213
           R+   +  V L R    C +P+ V F++LI+GLC   R+ +A  ++ ++ A  G  PN  
Sbjct: 360 RIPEAYRHVELMRRTEGC-SPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRF 418

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFG---------------VVCKPNTVTYTT 258
           TY+ L+ GLC+ G +      FE+M     +                  VC+P  VTY T
Sbjct: 419 TYAFLLEGLCKAGDSRRLEQCFEQMLEREWRSSSSWPIHSPEVDFLMVQVCRPTLVTYNT 478

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ GL K G V  A  L   M +  ++PDV+T+NS++ G C      +A+ +    +++G
Sbjct: 479 LVTGLSKSGMVRDALGLLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERG 538

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P+VVT++ ++D L K  KMDEA +LL  M+  G   NT T+ST++DG    GR+  A 
Sbjct: 539 CRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAV 598

Query: 379 ELFVSMESMGCKHTVFSY 396
            +   M   GC     +Y
Sbjct: 599 VVLRQMRDAGCLPDAVTY 616



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 150/297 (50%), Gaps = 6/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M+ +      +T   ++ G L   +  D V+ L +++   G  PD  TYN 
Sbjct: 560 DEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVL-RQMRDAGCLPDAVTYNT 618

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K  R+     +L  +L + F P  V +T+L  GLC   R  EA  +   + A G
Sbjct: 619 LIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARG 678

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN ITYS++++GLC+ G    AL  FE+MA        V  P+ + Y+ +IDGLCK G
Sbjct: 679 CAPNAITYSSIVDGLCKAGRVTEALGYFEKMARDE-----VVAPHVIAYSALIDGLCKAG 733

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E   +M      PDVVT++ LI+G C A   +    L   M ++G + D+  +N
Sbjct: 734 RIDEAYEFLERMIRAGRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYN 793

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +++  C  G+   A  LLE M   G+  NT T   ++   C   R++ A   F S+
Sbjct: 794 AMINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSI 850



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 167/353 (47%), Gaps = 49/353 (13%)

Query: 78  GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           GQG        EAF + + M      PP L +F L+   L K    +    +   +   G
Sbjct: 83  GQG-----RAKEAFSLLERM-AANGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMVDRG 136

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
             PD+  + +L++  C++GRV   +    ++L   FTPDAV + +++ GL    R+  A 
Sbjct: 137 FVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTPDAVTYNTMVDGLYKAGRLEAAG 196

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            +   L      P V T++  ++GL + G+   A   F+ M     + GV   PNTVTY 
Sbjct: 197 MVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFFDSMP----QTGV--SPNTVTYD 250

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNIN-------------------------------- 285
            +IDGLCK G +D A  L   ++DKN                                  
Sbjct: 251 ALIDGLCKAGKLDIALGL---LRDKNSQAGMFAFSSLLHGLCQAHRLEEAIQLLKAMPCV 307

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+VV +NSL++G C A   +EA  L   M + G   DV+T+N+++  LCK  ++ EA R 
Sbjct: 308 PNVVCFNSLMNGLCQARRVDEAFELFDVMKESGCSADVITYNILLKGLCKLRRIPEAYRH 367

Query: 346 LELM-ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM-GCKHTVFSY 396
           +ELM    G +PN  TFSTL+ G C  GRVN A E++  M ++ G     F+Y
Sbjct: 368 VELMRRTEGCSPNVVTFSTLIQGLCNAGRVNQAWEVYERMVAVEGISPNRFTY 420



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 132/255 (51%), Gaps = 6/255 (2%)

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + TYN+LIN  CK GRV   F    + ++  F P  V ++++I GLC ++ + +   L  
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   GC PN +TY+TL+N L   G    A +L E MA  NG     C P  +T+  II 
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMA-ANG-----CPPELITFGLIIK 114

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLCKEG ++ A  +  +M D+   PDV  +  L+H  C     +EA     +++  G  P
Sbjct: 115 GLCKEGEIEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTP 174

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           D VT+N ++D L K G+++ A  +L+L+     +P   TF+  +DG    G +  A E F
Sbjct: 175 DAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFF 234

Query: 382 VSMESMGCKHTVFSY 396
            SM   G      +Y
Sbjct: 235 DSMPQTGVSPNTVTY 249



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 82/275 (29%), Positives = 134/275 (48%), Gaps = 6/275 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N+L   L K        + F++    G  P + TY+ +I+  C+   V  G  +L 
Sbjct: 1   MVTYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLE 60

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      P+AV + +L+  L  + R  EA +L  ++ A GC P +IT+  +I GLC+ G
Sbjct: 61  EMAGRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEG 120

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  + +EM +     G V  P+   +T ++  LC+ G VD+A   F Q+      P
Sbjct: 121 EIEAAFRVVDEMVD----RGFV--PDVEIHTVLLHALCELGRVDEAWFFFQQVLLIGFTP 174

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D VTYN+++ G   A     A  +L  + +    P V TF + +D L K G +  A    
Sbjct: 175 DAVTYNTMVDGLYKAGRLEAAGMVLQLLAESFSSPTVFTFTIAVDGLSKAGNLTGAYEFF 234

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           + M   GV+PNT T+  L+DG C  G+++ A  L 
Sbjct: 235 DSMPQTGVSPNTVTYDALIDGLCKAGKLDIALGLL 269



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 144/342 (42%), Gaps = 44/342 (12%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            EA   F+ M       P + +++ L   L K    D      +R+   G  PD+ T++IL
Sbjct: 701  EALGYFEKMARDEVVAPHVIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSIL 760

Query: 149  INCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            IN  C  GR+  G  +  G   R C   D  A+ ++I   C +     A AL  ++K  G
Sbjct: 761  INGLCDAGRIDTGLELFCGMAERGC-KADIYAYNAMINAYCLKGEFSAAYALLEEMKTHG 819

Query: 208  CKPNVIT---------------------------------YSTLINGLCRTGHTIVALNL 234
               N +T                                 Y+TLI  L  +  +  AL L
Sbjct: 820  IAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDCRDEISYNTLITSLVASRRSEQALEL 879

Query: 235  FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
               M    G       P+   Y T++DGL K G  + A +L  +M+ +  +PD+ TY  +
Sbjct: 880  LRAMVADGG------SPDACNYMTVMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIM 933

Query: 295  IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
            I G   A     A     EM+ + ++PD + ++ ++D  CK  K+D+A +LL      G+
Sbjct: 934  ISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSSLIDAFCKADKVDDAWKLLR---SSGI 990

Query: 355  NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             P  + +ST++D  C     + A E+   M+S  C+  +  +
Sbjct: 991  EPTITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIW 1032



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 146/332 (43%), Gaps = 45/332 (13%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +EA+   + M+      P + +F++L   L      DT L LF  +   G   D+Y YN 
Sbjct: 736  DEAYEFLERMIRA-GRIPDVVTFSILINGLCDAGRIDTGLELFCGMAERGCKADIYAYNA 794

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK--- 204
            +IN +C  G  S  + +L  +       + V    +IK LC   RI EA + F  +    
Sbjct: 795  MINAYCLKGEFSAAYALLEEMKTHGIAKNTVTHGIVIKALCGNDRIDEAVSYFHSIPEDC 854

Query: 205  ------------------------------AFGCKPNVITYSTLINGLCRTGHTIVALNL 234
                                          A G  P+   Y T+++GL + G   VA  L
Sbjct: 855  RDEISYNTLITSLVASRRSEQALELLRAMVADGGSPDACNYMTVMDGLFKAGSPEVAAKL 914

Query: 235  FEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
             +EM + G+        P+  TYT +I GL K   +  A + F +M  KN+ PD + Y+S
Sbjct: 915  LQEMRSRGH-------SPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKNLKPDAIVYSS 967

Query: 294  LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
            LI  FC A+  ++A  LL      G++P +  ++ ++D LCKN   D+A  ++  M  + 
Sbjct: 968  LIDAFCKADKVDDAWKLL---RSSGIEPTITMYSTMVDSLCKNRGTDKALEVIREMKSKN 1024

Query: 354  VNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
              P    +++L   +   GRV+ A +L   ++
Sbjct: 1025 CEPGIHIWTSLATAYVAEGRVDEAVKLVNDLQ 1056


>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
 gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
          Length = 382

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNI 147
           +A   FD  L +  + P + S+  L   L K    D    LF+++  + G  P+ +TYN 
Sbjct: 28  QALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 87

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK  R+     V+    +  F PD V + +L+  L    R+ EA A FT++   G
Sbjct: 88  LVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 147

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +++++ +I GLCR      AL +F EM + +        PN VTY+ +IDGLCK  
Sbjct: 148 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD------FHPNLVTYSVVIDGLCKSD 201

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A++L  +M  +   PD+V Y  L+ GF  A   + A  LL  M+ QG  PDVVT+ 
Sbjct: 202 QLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 261

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D+LCK G++D+A  +   ++    +PN  T+S L+ G+C   RV+   ++   M  M
Sbjct: 262 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREM 318

Query: 388 GCKHTVFSY 396
            C+  V +Y
Sbjct: 319 ACRPNVVTY 327



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 9/264 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N L   L +    D  L+ F ++   G  P L ++N +I   C+  R++ 
Sbjct: 111 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLAD 170

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   ++   F P+ V ++ +I GLC   ++ EA  L  ++ + GC+P+++ Y+ L+ 
Sbjct: 171 ALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVL 230

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G    G    AL L   M +        C P+ VTYT +ID LCK G VD A E+F ++ 
Sbjct: 231 GFSAAGRLDSALGLLRRMVSQG------CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELV 284

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
               +P+VVTY++LI G+C A+  +E   ++ EM     +P+VVT+N ++  L    + +
Sbjct: 285 ANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNE 341

Query: 341 EASRLLELMILRGVNPNTSTFSTL 364
           EA  +   M   G  P+  T+  L
Sbjct: 342 EAYGMFREMSECGFVPDARTYRGL 365



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F  M+      P   ++N L   L K    D   ++          PD+ TYN 
Sbjct: 63  DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNT 122

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+    ++GRV        ++    + P  V+F ++I GLC   R+ +A  +F ++    
Sbjct: 123 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 182

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++TYS +I+GLC++     A  L + M +        C+P+ V YT ++ G    G
Sbjct: 183 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG------CRPDLVAYTPLVLGFSAAG 236

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  +M  +   PDVVTY  +I   C     ++A+ +  E++     P+VVT++
Sbjct: 237 RLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYS 296

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C+  ++DE  +++  M  R   PN  T++T++ G  +  R   A  +F  M   
Sbjct: 297 ALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSEC 353

Query: 388 G 388
           G
Sbjct: 354 G 354



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ M++ R   P L +++++   L K+   D    L  R+ S G  PDL  Y  L
Sbjct: 170 DALEVFNEMID-RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 228

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  F   GR+     +L R++     PD V +T +I  LC   R+ +A  +F +L A  C
Sbjct: 229 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 288

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+TYS LI G CR         +  EMA         C+PN VTY T+I GL     
Sbjct: 289 SPNVVTYSALIGGYCRASRVDEGGKVMREMA---------CRPNVVTYNTMIWGLSMVDR 339

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSL 294
            ++A  +F +M +    PD  TY  L
Sbjct: 340 NEEAYGMFREMSECGFVPDARTYRGL 365



 Score = 46.2 bits (108), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 25/82 (30%), Positives = 48/82 (58%), Gaps = 2/82 (2%)

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI-LRGVNPNTSTFSTLMDGFCLTGRVN 375
           +G+Q +  T ++I+  LC+ G++ +A    +  + L    P+  +++TL++G C  GRV+
Sbjct: 4   EGMQCNDRTTSIILQGLCRCGRVAQALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVD 63

Query: 376 HAKELFVSM-ESMGCKHTVFSY 396
            A +LF  M  + GC+   F+Y
Sbjct: 64  AAFDLFRKMVAAGGCRPNAFTY 85


>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
          Length = 715

 Score =  192 bits (489), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+ R   P + ++ +L   + K+  +   + +   + + G  P++ TYN++
Sbjct: 194 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 252

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+ GRV      L R+    F PD V++T+++KGLCA  R  +   LF ++    C
Sbjct: 253 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 312

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  L+   CR G    A+ + E+M+ G+G     C  NT     +I+ +CK+G 
Sbjct: 313 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGR 366

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +    M     +PD ++Y +++ G C A  W +A  LL EM+ +   P+ VTFN 
Sbjct: 367 VDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 426

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +++A+ L+E M   G   N  T++ L++GFC+ GRV+ A ELF SM    
Sbjct: 427 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--- 483

Query: 389 CKHTVFSY 396
           CK    +Y
Sbjct: 484 CKPNTITY 491



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 145/269 (53%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +    +G   D++ YN L+  +C+ G++     ++  +      PDA  +T +I+GLC
Sbjct: 131 VLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLC 187

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ EA +L   +   GC+P+V+TY+ L+  +C++     A+ + +EM A G      
Sbjct: 188 DRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG------ 241

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+EG VD A+E   ++      PD V+Y +++ G C A  W + 
Sbjct: 242 -CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 300

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EMM++   P+ VTF++++   C+ G ++ A ++LE M   G   NT+  + +++ 
Sbjct: 301 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 360

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A +   +M S GC     SY
Sbjct: 361 ICKQGRVDDAFQFLNNMGSYGCSPDTISY 389



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 9/286 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++   + K    D        + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 355 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 414

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ V F + I  LC +  I +A  L  ++   GC+ N++TY+ L+NG C  G    
Sbjct: 415 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 474

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF         + + CKPNT+TYTT++ GLC    +D A EL  +M  K+  P+VVT
Sbjct: 475 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 525

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N L+  FC     +EA  L+ +MM+ G  P+++T+N ++D + K+   +EA  LL  ++
Sbjct: 526 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 585

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             GV+P+  T+S+++       RV  A ++F  ++ +G +     Y
Sbjct: 586 SNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIY 631



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 9/285 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +    L ++++  G   ++ TYN L+N FC  GRV     
Sbjct: 418 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 477

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +   C  P+ + +T+L+ GLC   R+  AA L  ++    C PNV+T++ L++  C
Sbjct: 478 LFYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFC 534

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ L E+M          C PN +TY T++DG+ K+   ++A EL   +    
Sbjct: 535 QKGLMDEAIELVEQMMEHG------CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 588

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD+VTY+S+I      +   EA  +   + D G++P  V +N I+  LCK    D A 
Sbjct: 589 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 648

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+  G  PN  T+ TL++G      +   ++L   + S G
Sbjct: 649 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 693



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 105/215 (48%), Gaps = 9/215 (4%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD    T LI+ LC   R  +AA +    +  G   +V  Y+TL+ G CR G    A  L
Sbjct: 107 PDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRL 166

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
              M            P+  TYT II GLC  G V +A  L   M  +   P VVTY  L
Sbjct: 167 IASMP---------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTVL 217

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           +   C +  + +A  +L EM  +G  P++VT+NVI++ +C+ G++D+A   L  +   G 
Sbjct: 218 LEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGF 277

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            P+T +++T++ G C   R    +ELF  M    C
Sbjct: 278 QPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 312



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 97/201 (48%), Gaps = 9/201 (4%)

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           AA L  +  + G  P+V   + LI  LCR G T  A  +            V        
Sbjct: 93  AARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDV------FA 146

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T++ G C+ G +D A+ L   M    + PD  TY  +I G C      EA  LL +M+
Sbjct: 147 YNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLCDRGRVGEALSLLDDML 203

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G QP VVT+ V+++ +CK+    +A  +L+ M  +G  PN  T++ +++G C  GRV+
Sbjct: 204 HRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVD 263

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A+E    + S G +    SY
Sbjct: 264 DAREFLNRLSSYGFQPDTVSY 284


>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
 gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Cucumis sativus]
          Length = 768

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 101/292 (34%), Positives = 167/292 (57%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K  H    + +   +   GL PD+YTYN LI+  CK+G +     +
Sbjct: 306 PDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKI 365

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++    +P+AV + ++I  LC E+R+ EA  +   L + G  P+V T+++LI GLC 
Sbjct: 366 LDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSLIQGLCL 425

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           + +   A++LFEEM  G G     C+P+  TY  +ID LC    +++A  L  +M+    
Sbjct: 426 SSNHKSAMDLFEEM-KGKG-----CRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGC 479

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +VV YN+LI GFC      EA  +  EM  QGV  D VT+N ++D LCK+ ++++A++
Sbjct: 480 ARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQ 539

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ MI+ G+ P+  T+++L+  FC TG +  A ++  +M S GC   + +Y
Sbjct: 540 LMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTY 591



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 97  MLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           M+   PS    P  T+F  +     +  + D  L + +++   G      T N+LIN FC
Sbjct: 225 MMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFC 284

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K GR+      +   +   F PD   + +L+ GLC       A  +   +   G  P++ 
Sbjct: 285 KQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAMLLGGLDPDIY 344

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY++LI+GLC+ G    A+ + ++M + +      C PN VTY  II  LCKE  VD+A 
Sbjct: 345 TYNSLISGLCKLGEIEEAVKILDQMVSRD------CSPNAVTYNAIISSLCKENRVDEAT 398

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           E+   +  K I PDV T+NSLI G C +++   A  L  EM  +G +PD  T+N+++D L
Sbjct: 399 EIARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSL 458

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C + K++EA  LL+ M L G   N   ++TL+DGFC   R+  A+E+F  ME  G     
Sbjct: 459 CSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDS 518

Query: 394 FSY 396
            +Y
Sbjct: 519 VTY 521



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 157/293 (53%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K    +  + +  ++ S    P+  TYN +I+  CK  RV     +
Sbjct: 341 PDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEI 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   F SLI+GLC  S    A  LF ++K  GC+P+  TY+ LI+ LC 
Sbjct: 401 ARLLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCS 460

Query: 225 TGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +     ALNL +EM  NG       C  N V Y T+IDG CK   +++A+E+F +M+ + 
Sbjct: 461 SRKLEEALNLLKEMELNG-------CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQG 513

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++ D VTYN+LI G C +    +A  L+ +M+ +G++PD  T+N ++   CK G + +A+
Sbjct: 514 VSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAA 573

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++ M   G NP+  T++TL+ G C  GRV  A  L  S++  G   T  +Y
Sbjct: 574 DIVQTMTSSGCNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAY 626



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 9/298 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I D M++   SP  +T +N +   L K    D    + + L S G+ PD+ T+N 
Sbjct: 360 EEAVKILDQMVSRDCSPNAVT-YNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNS 418

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C          +   +      PD   +  LI  LC+  ++ EA  L  +++  G
Sbjct: 419 LIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C  NV+ Y+TLI+G C+      A  +F+EM   G  +       ++VTY T+IDGLCK 
Sbjct: 479 CARNVVIYNTLIDGFCKNKRIEEAEEIFDEMELQGVSR-------DSVTYNTLIDGLCKS 531

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V+ A +L  QM  + + PD  TYNSL+  FC   D  +A  ++  M   G  PD+VT+
Sbjct: 532 KRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTY 591

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             ++  LCK G++  ASRLL  + ++G+      ++ ++       R + A  LF  M
Sbjct: 592 ATLISGLCKAGRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREM 649



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 131/268 (48%), Gaps = 11/268 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L   L  ++  +  L+L K +   G   ++  YN LI+ FCK  R+     +
Sbjct: 446 PDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGFCKNKRIEEAEEI 505

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     + D+V + +LI GLC   R+ +AA L  ++   G +P+  TY++L+   C+
Sbjct: 506 FDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIMEGLRPDKFTYNSLLTHFCK 565

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF--LQMKDK 282
           TG    A ++ + M +        C P+ VTY T+I GLCK G V  A  L   +QMK  
Sbjct: 566 TGDIKKAADIVQTMTSSG------CNPDIVTYATLISGLCKAGRVQVASRLLRSIQMKGM 619

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG-KMDE 341
            + P    YN +I      N  +EA  L  EM+D+   PD +T+ ++   LC  G  + E
Sbjct: 620 VLTPH--AYNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAITYKIVYRGLCNGGGPIGE 677

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFC 369
           A      MI RG  P  S+F  L +G C
Sbjct: 678 AVDFTVEMIERGNIPEFSSFVMLAEGLC 705



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 116/242 (47%), Gaps = 7/242 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L     K K  +    +F  +   G+  D  TYN LI+  CK  RV     ++ +++
Sbjct: 486 YNTLIDGFCKNKRIEEAEEIFDEMELQGVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMI 545

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   + SL+   C    I +AA +   + + GC P+++TY+TLI+GLC+ G   
Sbjct: 546 MEGLRPDKFTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQ 605

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           VA  L   +       G+V  P+   Y  +I  L K     +A  LF +M DK+  PD +
Sbjct: 606 VASRLLRSIQMK----GMVLTPHA--YNPVIQALFKRNRTHEAMRLFREMLDKSEPPDAI 659

Query: 290 TYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           TY  +  G C       EA    +EM+++G  P+  +F ++ + LC     D   +L+++
Sbjct: 660 TYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIPEFSSFVMLAEGLCTLSMDDTLVKLVDM 719

Query: 349 MI 350
           ++
Sbjct: 720 IM 721



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 47/191 (24%), Positives = 92/191 (48%), Gaps = 6/191 (3%)

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           +  KP+   Y+ L+N L         L L E   +   +  +  + +  T+  +I  LCK
Sbjct: 162 YRIKPDTRFYNVLLNVLVDANK----LKLVESAHSSMVRRRI--RHDVSTFNILIKALCK 215

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              V  A  +  +M    ++PD  T+ +++ G+    + + A  +  +M++ G     VT
Sbjct: 216 AHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVT 275

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            NV+++  CK G++D+A   ++  +  G  P+  T++TL++G C  G   HA E+  +M 
Sbjct: 276 VNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEVVDAML 335

Query: 386 SMGCKHTVFSY 396
             G    +++Y
Sbjct: 336 LGGLDPDIYTY 346



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 81/181 (44%), Gaps = 7/181 (3%)

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+   Y  ++  L + G       + EEM          C+ +   +   ++   K    
Sbjct: 95  PSSSVYEEILRKLGKAGSFEYMRRVLEEMKLSG------CEFDRGIFLIFVESYGKFELY 148

Query: 270 DKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           D+   +   M+D+  I PD   YN L++    AN           M+ + ++ DV TFN+
Sbjct: 149 DEVVGIVKVMEDEYRIKPDTRFYNVLLNVLVDANKLKLVESAHSSMVRRRIRHDVSTFNI 208

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LCK  ++  A  ++E M   G++P+ +TF+T+M G+   G ++ A  +   M   G
Sbjct: 209 LIKALCKAHQVRPAILMMEEMPSYGLSPDETTFTTIMQGYIEGGNLDGALRIKEQMVEYG 268

Query: 389 C 389
           C
Sbjct: 269 C 269


>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
          Length = 684

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+ R   P + ++ +L   + K+  +   + +   + + G  P++ TYN++
Sbjct: 163 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+ GRV      L R+    F PD V++T+++KGLCA  R  +   LF ++    C
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  L+   CR G    A+ + E+M+ G+G     C  NT     +I+ +CK+G 
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGR 335

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +    M     +PD ++Y +++ G C A  W +A  LL EM+ +   P+ VTFN 
Sbjct: 336 VDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +++A+ L+E M   G   N  T++ L++GFC+ GRV+ A ELF SM    
Sbjct: 396 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--- 452

Query: 389 CKHTVFSY 396
           CK    +Y
Sbjct: 453 CKPNTITY 460



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 145/269 (53%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +    +G   D++ YN L+  +C+ G++     ++  +      PDA  +T +I+GLC
Sbjct: 100 VLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLC 156

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ EA +L   +   GC+P+V+TY+ L+  +C++     A+ + +EM A G      
Sbjct: 157 DRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG------ 210

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+EG VD A+E   ++      PD V+Y +++ G C A  W + 
Sbjct: 211 -CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EMM++   P+ VTF++++   C+ G ++ A ++LE M   G   NT+  + +++ 
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A +   +M S GC     SY
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISY 358



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/286 (30%), Positives = 146/286 (51%), Gaps = 9/286 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++   + K    D        + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ V F + I  LC +  I +A  L  ++   GC+ N++TY+ L+NG C  G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF         + + CKPNT+TYTT++ GLC    +D A EL  +M  K+  P+VVT
Sbjct: 444 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N L+  FC     +EA  L+ +MM+ G  P+++T+N ++D +  +   +EA  LL  ++
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLV 554

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             GV+P+  T+S+++       RV  A ++F  ++ +G +     Y
Sbjct: 555 SNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIY 600



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 138/285 (48%), Gaps = 9/285 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +    L ++++  G   ++ TYN L+N FC  GRV     
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +   C  P+ + +T+L+ GLC   R+  AA L  ++    C PNV+T++ L++  C
Sbjct: 447 LFYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFC 503

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ L E+M          C PN +TY T++DG+  +   ++A EL   +    
Sbjct: 504 QKGLMDEAIELVEQMMEHG------CTPNLITYNTLLDGITNDCNSEEALELLHGLVSNG 557

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD+VTY+S+I      +   EA  +   + D G++P  V +N I+  LCK    D A 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+  G  PN  T+ TL++G      +   ++L   + S G
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD    T LI+ LC   R  +AA +    +  G   +V  Y+TL+ G CR G    A  
Sbjct: 75  APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   M            P+  TYT II GLC  G V +A  L   M  +   P VVTY  
Sbjct: 135 LIASMP---------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 185

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+   C +  + +A  +L EM  +G  P++VT+NVI++ +C+ G++D+A   L  +   G
Sbjct: 186 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             P+T +++T++ G C   R    +ELF  M    C
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%)

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N+ +      +D  EA  L+     +G  PDV     ++  LC+ G+  +A+R+L     
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            G   +   ++TL+ G+C  G+++ A+ L  SM
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM 139


>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
 gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
          Length = 684

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 166/308 (53%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+ R   P + ++ +L   + K+  +   + +   + + G  P++ TYN++
Sbjct: 163 EALSLLDDMLH-RGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVI 221

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+ GRV      L R+    F PD V++T+++KGLCA  R  +   LF ++    C
Sbjct: 222 INGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  L+   CR G    A+ + E+M+ G+G     C  NT     +I+ +CK+G 
Sbjct: 282 MPNEVTFDMLVRFFCRGGMVERAIQVLEQMS-GHG-----CAANTTLCNIVINTICKQGR 335

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +    M     +PD ++Y +++ G C A  W +A  LL EM+ +   P+ VTFN 
Sbjct: 336 VDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVRKNCPPNEVTFNT 395

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +++A+ L+E M   G   N  T++ L++GFC+ GRV+ A ELF SM    
Sbjct: 396 FICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALELFYSMP--- 452

Query: 389 CKHTVFSY 396
           CK    +Y
Sbjct: 453 CKPNTITY 460



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 84/269 (31%), Positives = 145/269 (53%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +    +G   D++ YN L+  +C+ G++     ++  +      PDA  +T +I+GLC
Sbjct: 100 VLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARRLIASMP---VAPDAYTYTPIIRGLC 156

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ EA +L   +   GC+P+V+TY+ L+  +C++     A+ + +EM A G      
Sbjct: 157 DRGRVGEALSLLDDMLHRGCQPSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKG------ 210

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+EG VD A+E   ++      PD V+Y +++ G C A  W + 
Sbjct: 211 -CTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 269

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EMM++   P+ VTF++++   C+ G ++ A ++LE M   G   NT+  + +++ 
Sbjct: 270 EELFAEMMEKNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINT 329

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A +   +M S GC     SY
Sbjct: 330 ICKQGRVDDAFQFLNNMGSYGCSPDTISY 358



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 147/286 (51%), Gaps = 9/286 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++   + K    D        + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 324 NIVINTICKQGRVDDAFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMVR 383

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ V F + I  LC +  I +A  L  ++   GC+ N++TY+ L+NG C  G    
Sbjct: 384 KNCPPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDS 443

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF         + + CKPNT+TYTT++ GLC    +D A EL  +M  K+  P+VVT
Sbjct: 444 ALELF---------YSMPCKPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVT 494

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N L+  FC     +EA  L+ +MM+ G  P+++T+N ++D + K+   +EA  LL  ++
Sbjct: 495 FNVLVSFFCQKGLMDEAIELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLV 554

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             GV+P+  T+S+++       RV  A ++F  ++ +G +     Y
Sbjct: 555 SNGVSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIY 600



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 139/285 (48%), Gaps = 9/285 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +    L ++++  G   ++ TYN L+N FC  GRV     
Sbjct: 387 PPNEVTFNTFICILCQKGLIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGRVDSALE 446

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +   C  P+ + +T+L+ GLC   R+  AA L  ++    C PNV+T++ L++  C
Sbjct: 447 LFYSM--PC-KPNTITYTTLLTGLCNAERLDAAAELLAEMLQKDCAPNVVTFNVLVSFFC 503

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ L E+M          C PN +TY T++DG+ K+   ++A EL   +    
Sbjct: 504 QKGLMDEAIELVEQMMEHG------CTPNLITYNTLLDGITKDCNSEEALELLHGLVSNG 557

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD+VTY+S+I      +   EA  +   + D G++P  V +N I+  LCK    D A 
Sbjct: 558 VSPDIVTYSSIIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAI 617

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+  G  PN  T+ TL++G      +   ++L   + S G
Sbjct: 618 DFFAYMVSNGCMPNELTYITLIEGLANEDFLKETRDLLRELCSRG 662



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD    T LI+ LC   R  +AA +    +  G   +V  Y+TL+ G CR G    A  
Sbjct: 75  APDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLDAARR 134

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   M            P+  TYT II GLC  G V +A  L   M  +   P VVTY  
Sbjct: 135 LIASMP---------VAPDAYTYTPIIRGLCDRGRVGEALSLLDDMLHRGCQPSVVTYTV 185

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+   C +  + +A  +L EM  +G  P++VT+NVI++ +C+ G++D+A   L  +   G
Sbjct: 186 LLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAREFLNRLSSYG 245

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             P+T +++T++ G C   R    +ELF  M    C
Sbjct: 246 FQPDTVSYTTVLKGLCAAKRWEDVEELFAEMMEKNC 281



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%)

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N+ +      +D  EA  L+     +G  PDV     ++  LC+ G+  +A+R+L     
Sbjct: 47  NARLRRLIARDDLAEAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAER 106

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            G   +   ++TL+ G+C  G+++ A+ L  SM
Sbjct: 107 SGTAVDVFAYNTLVAGYCRYGQLDAARRLIASM 139


>gi|296087920|emb|CBI35203.3| unnamed protein product [Vitis vinifera]
          Length = 394

 Score =  192 bits (488), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 117/352 (33%), Positives = 175/352 (49%), Gaps = 54/352 (15%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++A   F  ML+M P PPP+  F  L   +AK KHY TVLSL K+++S G+ PD+YT 
Sbjct: 45  TLDDALSSFHRMLHMHP-PPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTL 103

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN FC + RV     VL +IL+    PD   FT+L++GLC   +I EA  +F K+  
Sbjct: 104 TIVINSFCHLNRVDFALSVLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVG 163

Query: 206 FGCKPN-------------VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
            G +PN             + TY++LI+ LC          L  EM            PN
Sbjct: 164 EGFQPNPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSK------IMPN 217

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA----- 307
            V+   ++D LCKEG V +A ++   M    + PDVVTY +L+ G C  ++ +EA     
Sbjct: 218 VVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFD 277

Query: 308 ------------------NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL- 348
                             N L  EM+  G  P++VT+++++D LCKN ++ EA  LL+  
Sbjct: 278 MMVRNGCVCNVVSYNTLINALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAI 337

Query: 349 ----------MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
                     +  RG+ P+  T + ++ G C  G ++ A +LF  M+    K
Sbjct: 338 EGTARDLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENDIK 389



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/243 (33%), Positives = 125/243 (51%), Gaps = 19/243 (7%)

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R+L     P    F  L+  +          +L  K+ +FG  P+V T + +IN  C   
Sbjct: 55  RMLHMHPPPPIFEFAKLLTSIAKMKHYSTVLSLSKKMDSFGIPPDVYTLTIVINSFCHLN 114

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF---------- 276
               AL++  ++     K G   +P+T T+TT++ GLC  G + +A ++F          
Sbjct: 115 RVDFALSVLAKIL----KLG--HQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQP 168

Query: 277 ---LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
              L M  K I+PD+ TYNSLIH  C   +W     LL EM+   + P+VV+ N+++D L
Sbjct: 169 NPNLIMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDAL 228

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK GK+ EA  ++++MI  GV P+  T++ LMDG CL   ++ A ++F  M   GC   V
Sbjct: 229 CKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDGHCLRSEMDEAVKVFDMMVRNGCVCNV 288

Query: 394 FSY 396
            SY
Sbjct: 289 VSY 291


>gi|15221540|ref|NP_172145.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75205637|sp|Q9SHK2.1|PPR17_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06580
 gi|6692678|gb|AAF24812.1|AC007592_5 F12K11.8 [Arabidopsis thaliana]
 gi|332189887|gb|AEE28008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 500

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 105/326 (32%), Positives = 178/326 (54%), Gaps = 11/326 (3%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           +ER +S     + +I  N+A  +F  M    P  P +  F+ L   +AK   Y+ V+SLF
Sbjct: 48  RERLRSG----LHSIKFNDALTLFCDMAESHP-LPSIVDFSRLLIAIAKLNKYEAVISLF 102

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           + L   G+  DLY++  LI+CFC+  R+S     LG++++  F P  V F SL+ G C  
Sbjct: 103 RHLEMLGISHDLYSFTTLIDCFCRCARLSLALSCLGKMMKLGFEPSIVTFGSLVNGFCHV 162

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           +R  EA +L  ++   G +PNV+ Y+T+I+ LC  G    AL++ + M     K G+  +
Sbjct: 163 NRFYEAMSLVDQIVGLGYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMK----KMGI--R 216

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+ VTY ++I  L   G    +  +   M    I+PDV+T+++LI  +       EA   
Sbjct: 217 PDVVTYNSLITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQ 276

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             EM+ + V P++VT+N +++ LC +G +DEA ++L +++ +G  PN  T++TL++G+C 
Sbjct: 277 YNEMIQRSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCK 336

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             RV+   ++   M   G     F+Y
Sbjct: 337 AKRVDDGMKILCVMSRDGVDGDTFTY 362



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/332 (27%), Positives = 152/332 (45%), Gaps = 42/332 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ++ +    P +  +N +   L +    +T L + K +   G+ PD+ TYN L
Sbjct: 167 EAMSLVDQIVGL-GYEPNVVIYNTIIDSLCEKGQVNTALDVLKHMKKMGIRPDVVTYNSL 225

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I      G       +L  ++R   +PD + F++LI     E +++EA   + ++     
Sbjct: 226 ITRLFHSGTWGVSARILSDMMRMGISPDVITFSALIDVYGKEGQLLEAKKQYNEMIQRSV 285

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY++LINGLC  G    A  +   + +  G F     PN VTY T+I+G CK   
Sbjct: 286 NPNIVTYNSLINGLCIHGLLDEAKKVLNVLVS-KGFF-----PNAVTYNTLINGYCKAKR 339

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD------ 322
           VD   ++   M    ++ D  TYN+L  G+C A  ++ A  +L  M+  GV PD      
Sbjct: 340 VDDGMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNI 399

Query: 323 -----------------------------VVTFNVIMDELCKNGKMDEASRLLELMILRG 353
                                        ++T+N+I+  LCK  K+++A  L   + L+G
Sbjct: 400 LLDGLCDHGKIGKALVRLEDLQKSKTVVGIITYNIIIKGLCKADKVEDAWYLFCSLALKG 459

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           V+P+  T+ T+M G         A EL+  M+
Sbjct: 460 VSPDVITYITMMIGLRRKRLWREAHELYRKMQ 491



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/222 (30%), Positives = 105/222 (47%), Gaps = 7/222 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N L   L      D    +   L S G FP+  TYN LIN +CK  RV  
Sbjct: 283 RSVNPNIVTYNSLINGLCIHGLLDEAKKVLNVLVSKGFFPNAVTYNTLINGYCKAKRVDD 342

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +L  + R     D   + +L +G C   +   A  +  ++ + G  P++ T++ L++
Sbjct: 343 GMKILCVMSRDGVDGDTFTYNTLYQGYCQAGKFSAAEKVLGRMVSCGVHPDMYTFNILLD 402

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC  G    AL   E++       G++      TY  II GLCK   V+ A  LF  + 
Sbjct: 403 GLCDHGKIGKALVRLEDLQKSKTVVGII------TYNIIIKGLCKADKVEDAWYLFCSLA 456

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQP 321
            K ++PDV+TY +++ G      W EA+ L  +M  + G+ P
Sbjct: 457 LKGVSPDVITYITMMIGLRRKRLWREAHELYRKMQKEDGLMP 498


>gi|357491947|ref|XP_003616261.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355517596|gb|AES99219.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  192 bits (488), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 103/254 (40%), Positives = 145/254 (57%), Gaps = 6/254 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  P++Y +NIL++ FCK+G V +  +V   I R    P  V+F +LI G C    + E 
Sbjct: 221 GYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEG 280

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L + +++    P+V TYS LINGLC+      A  LF+EM     + G+V  PN VT+
Sbjct: 281 FVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMC----EMGLV--PNGVTF 334

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+IDG CK G +D A   F  MKD+ I PD++TYN+LI+G C   D  EA  LL EM+ 
Sbjct: 335 TTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEARKLLNEMIG 394

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G +PD +TF  +MD  CK+G MD A  + + M+  G+  +   F+ L+ G C  GRV  
Sbjct: 395 NGFKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRD 454

Query: 377 AKELFVSMESMGCK 390
           A+ +   M S G K
Sbjct: 455 AERMLKDMLSAGHK 468



 Score =  174 bits (442), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 161/298 (54%), Gaps = 7/298 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +FD  ++ R   P + SFN L     ++K+ +    L   + S  + PD++TY+ LI
Sbjct: 245 ARMVFD-EISRRGLRPSVVSFNTLISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALI 303

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK  RV     +   +      P+ V FT+LI G C   +I  A   F  +K  G +
Sbjct: 304 NGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIR 363

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P++ITY+ LINGLCR G    A  L  EM  GNG      KP+ +T+TT++DG CK+G +
Sbjct: 364 PDLITYNALINGLCRDGDLKEARKLLNEMI-GNG-----FKPDKITFTTLMDGCCKDGDM 417

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A E+  +M ++ I  D V + +LI G C      +A  +L +M+  G +PD  T+ ++
Sbjct: 418 DSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMV 477

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +D  CK G +   ++LL+ M   G  P   T++ LM+GFC  G++ +AK L  +M +M
Sbjct: 478 IDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNM 535



 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 159/293 (54%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +  FN+L     K         +F  ++  GL P + ++N LI+ +C+   V  GFV
Sbjct: 223 PPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRSKNVEEGFV 282

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +     +PD   +++LI GLC ESR+ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 283 LKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMGLVPNGVTFTTLIDGQC 342

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +AL  FE M +         +P+ +TY  +I+GLC++G + +A++L  +M    
Sbjct: 343 KHGKIDLALRNFEIMKDRG------IRPDLITYNALINGLCRDGDLKEARKLLNEMIGNG 396

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD +T+ +L+ G C   D + A  +   M+++G++ D V F  ++  LC++G++ +A 
Sbjct: 397 FKPDKITFTTLMDGCCKDGDMDSALEIKDRMVEEGIELDDVAFTALISGLCRDGRVRDAE 456

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+L+ M+  G  P+  T++ ++D FC  G V    +L   M+  G    V +Y
Sbjct: 457 RMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKEMQRDGRVPGVVTY 509



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 64/192 (33%), Positives = 110/192 (57%), Gaps = 6/192 (3%)

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            + ++  +G  PNV  ++ L++G C+ G  + A  +F+E++          +P+ V++ T
Sbjct: 213 FYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRG------LRPSVVSFNT 266

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I G C+   V++   L   M+ + I+PDV TY++LI+G C  +   EAN L  EM + G
Sbjct: 267 LISGYCRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG 326

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + P+ VTF  ++D  CK+GK+D A R  E+M  RG+ P+  T++ L++G C  G +  A+
Sbjct: 327 LVPNGVTFTTLIDGQCKHGKIDLALRNFEIMKDRGIRPDLITYNALINGLCRDGDLKEAR 386

Query: 379 ELFVSMESMGCK 390
           +L   M   G K
Sbjct: 387 KLLNEMIGNGFK 398



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 63/115 (54%)

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           E +L++ D    P+V  +N L+HGFC   D   A  +  E+  +G++P VV+FN ++   
Sbjct: 212 EFYLEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGY 271

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           C++  ++E   L  +M    ++P+  T+S L++G C   RV  A  LF  M  MG
Sbjct: 272 CRSKNVEEGFVLKSVMESERISPDVFTYSALINGLCKESRVEEANGLFDEMCEMG 326



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +F  L   L +         + K + S G  PD  TY ++I+CFCK G V  G  +L  
Sbjct: 437 VAFTALISGLCRDGRVRDAERMLKDMLSAGHKPDDPTYTMVIDCFCKKGDVKMGAKLLKE 496

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + R    P  V + +L+ G C + ++  A  L   +      PN IT++ L++G C+ G 
Sbjct: 497 MQRDGRVPGVVTYNALMNGFCKQGQMKNAKMLLHAMLNMEVVPNDITFNILLDGHCKHGS 556

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           + V   +F      NG+ G+V   +  +YT +++
Sbjct: 557 S-VDFKIF------NGEKGLVS--DYASYTALVN 581



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 46/85 (54%)

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
           +E++D G  P+V  FN++M   CK G +  A  + + +  RG+ P+  +F+TL+ G+C +
Sbjct: 215 LEVLDYGYPPNVYLFNILMHGFCKIGDVMNARMVFDEISRRGLRPSVVSFNTLISGYCRS 274

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
             V     L   MES      VF+Y
Sbjct: 275 KNVEEGFVLKSVMESERISPDVFTY 299


>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
 gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
          Length = 816

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/319 (33%), Positives = 168/319 (52%), Gaps = 18/319 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           N+A  +F  +L+   +P  +   +L+ G C+A +  +D    LF  +N  G  P   TYN
Sbjct: 340 NDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANS--FDDARELFADMNRRGCPPSPVTYN 397

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ++I+  CK G +     ++ +++     PD V + +++ GLC  SR+ EA  LF +++  
Sbjct: 398 VMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERL 457

Query: 207 GCKPNVITYSTLINGLCRT---------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
           GC PN  +++T+I GLC+          G    A  L + M + +G       P+ VTY+
Sbjct: 458 GCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTD-DGHV-----PDVVTYS 511

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+I GLC    VD A+ L   M  +   P VVT N+LIHG C A    EA  +L  M+  
Sbjct: 512 TLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSS 571

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  PDVVT+N ++   C+ G+ + A  LL  M+ RG+ PN  T++ L+ G C   R+  A
Sbjct: 572 GQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEA 631

Query: 378 KELFVSMESMGCKHTVFSY 396
             +F  M+S GC   +F+Y
Sbjct: 632 CGVFAQMKSSGCAPNLFTY 650



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 17/309 (5%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N R  PP   ++N++     K    +    L K++   G  PD+ TYN +++  CK  R
Sbjct: 384 MNRRGCPPSPVTYNVMIDASCKRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSR 443

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM---------EAAALFTKLKAFGC 208
           V    ++   + R   TP+  +  ++I GLC +S+I          EA  L  ++   G 
Sbjct: 444 VEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGH 503

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TYSTLI+GLC       A +L E+M          CKP  VT  T+I GLCK G 
Sbjct: 504 VPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQ------CKPTVVTQNTLIHGLCKAGR 557

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A+E+   M     +PDVVTYN+L+HG C A     A  LL +M+ +G+ P+VVT+  
Sbjct: 558 IKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVTYTA 617

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LCK  ++ EA  +   M   G  PN  T++ L+ GFC  G+V+   +LF  M   G
Sbjct: 618 LVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG 677

Query: 389 C--KHTVFS 395
               H V+ 
Sbjct: 678 ISPDHVVYG 686



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 160/299 (53%), Gaps = 15/299 (5%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  +N++   L +    D  + +F+++N   + PD ++Y ILI+   K G+++    +  
Sbjct: 288 LRGYNIVILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQ 347

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++L S  TP  VA+TSLI GLC  +   +A  LF  +   GC P+ +TY+ +I+  C+ G
Sbjct: 348 KLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRG 407

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A +L ++M   +G       P+ VTY T++DGLCK   V++A  LF +M+     P
Sbjct: 408 MLEEACDLIKKMIE-DGHV-----PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTP 461

Query: 287 DVVTYNSLIHGFCYAN---------DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +  ++N++I G C  +           +EA  LL  M D G  PDVVT++ ++  LC   
Sbjct: 462 NRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIA 521

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++D+A  LLE M+ R   P   T +TL+ G C  GR+  A+E+  +M S G    V +Y
Sbjct: 522 RVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPDVVTY 580



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 147/286 (51%), Gaps = 15/286 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI---------NCFCKM 155
           P + ++N +   L K+   +  L LF  +   G  P+  ++N +I         +  C+ 
Sbjct: 426 PDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQR 485

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G++   F +L R+      PD V +++LI GLC+ +R+ +A  L   +    CKP V+T 
Sbjct: 486 GKLDEAFRLLKRMTDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQ 545

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           +TLI+GLC+ G    A  + + M + +G+      P+ VTY T++ G C+ G  ++A+EL
Sbjct: 546 NTLIHGLCKAGRIKEAREVLDAMVS-SGQ-----SPDVVTYNTLVHGHCRAGQTERAREL 599

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
              M  + + P+VVTY +L+ G C AN   EA  +  +M   G  P++ T+  ++   C 
Sbjct: 600 LSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCS 659

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            G++D   +L   M+  G++P+   + TL    C +GR   A E+ 
Sbjct: 660 AGQVDGGLKLFGEMVCAGISPDHVVYGTLAAELCKSGRSARALEIL 705



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 149/292 (51%), Gaps = 15/292 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    S + +   L  +   D  L +++        P L T N+L+  FC  G+V     
Sbjct: 177 PLAAGSLDSVLVGLMDSGRIDEALQVYRENRRE---PCLVTLNVLLEGFCSRGQVDKARE 233

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK------AFGCKPNVITYST 217
           +L  +      PD V++ +++ GLC   R+ EA  LF   +      +    P++  Y+ 
Sbjct: 234 LLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNI 293

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I GLC+      A+ +FE+M   N        P++ +Y  +IDGL K G ++ A+ LF 
Sbjct: 294 VILGLCQNDRIDEAVQMFEKMNERN------VSPDSWSYGILIDGLAKAGKLNDARNLFQ 347

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           ++    + P  V Y SLIHG C AN +++A  L  +M  +G  P  VT+NV++D  CK G
Sbjct: 348 KLLHSGVTPSTVAYTSLIHGLCMANSFDDARELFADMNRRGCPPSPVTYNVMIDASCKRG 407

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            ++EA  L++ MI  G  P+  T++T+MDG C + RV  A  LF  ME +GC
Sbjct: 408 MLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRVEEALLLFNEMERLGC 459



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 146/304 (48%), Gaps = 24/304 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK--------HYDTVLSLFKRLNSTGLF 139
            EA  +F+ M  +  +P   +   ++ G   ++K          D    L KR+   G  
Sbjct: 445 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHV 504

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ TY+ LI+  C + RV     +L  +++    P  V   +LI GLC   RI EA  +
Sbjct: 505 PDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREV 564

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTT 258
              + + G  P+V+TY+TL++G CR G T  A  L  +M A G         PN VTYT 
Sbjct: 565 LDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARG-------LAPNVVTYTA 617

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ GLCK   + +A  +F QMK     P++ TY +LI GFC A   +    L  EM+  G
Sbjct: 618 LVSGLCKANRLPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVCAG 677

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELM-----ILRGVNPNTSTFSTLMDGFCLTGR 373
           + PD V +  +  ELCK+G+   ++R LE++      LR        +   +DG    G+
Sbjct: 678 ISPDHVVYGTLAAELCKSGR---SARALEILREGRESLRSEAWGDEVYRFAVDGLLEAGK 734

Query: 374 VNHA 377
           +  A
Sbjct: 735 MEMA 738



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 160/378 (42%), Gaps = 79/378 (20%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF  M     SP P   +N+L   L+K +  + V  + + +   G FPD +T+  +
Sbjct: 28  EAVKIFSLMEECH-SPYP-DVYNVLIDSLSKRQETEAVKKMVQVMVDRGCFPDSFTFTTI 85

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTP--------------------------------D 176
           +   CK G++    +V+   +RS   P                                +
Sbjct: 86  LCGLCKAGKMDEAELVMDE-MRSRMIPPYFATSSFLAHELCLRGSMERAFQLLEIMPVAN 144

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLK------AFGC---------------------- 208
           + A+  ++  LC  +R+ +A  L   +       A G                       
Sbjct: 145 SSAYNIVVVALCKAARVDDALELARTMSEKRIPLAAGSLDSVLVGLMDSGRIDEALQVYR 204

Query: 209 ----KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
               +P ++T + L+ G C  G    A  L   M +        C P+ V+Y T++DGLC
Sbjct: 205 ENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMPDEE------CAPDEVSYCTVLDGLC 258

Query: 265 KEGFVDKA------KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           K G V++A      +EL       +  P +  YN +I G C  +  +EA  +  +M ++ 
Sbjct: 259 KAGRVEEAVRLFGDRELPSSSSSSSSPPSLRGYNIVILGLCQNDRIDEAVQMFEKMNERN 318

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V PD  ++ +++D L K GK+++A  L + ++  GV P+T  +++L+ G C+    + A+
Sbjct: 319 VSPDSWSYGILIDGLAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDAR 378

Query: 379 ELFVSMESMGCKHTVFSY 396
           ELF  M   GC  +  +Y
Sbjct: 379 ELFADMNRRGCPPSPVTY 396



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 124/267 (46%), Gaps = 19/267 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + + M+  +  P  +T   L+ G L K         +   + S+G  PD+ TYN 
Sbjct: 524 DDARHLLEDMVKRQCKPTVVTQNTLIHG-LCKAGRIKEAREVLDAMVSSGQSPDVVTYNT 582

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C+ G+      +L  ++     P+ V +T+L+ GLC  +R+ EA  +F ++K+ G
Sbjct: 583 LVHGHCRAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGVFAQMKSSG 642

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC---KPNTVTYTTIIDGLC 264
           C PN+ TY+ LI G C  G     L LF EM         VC    P+ V Y T+   LC
Sbjct: 643 CAPNLFTYTALILGFCSAGQVDGGLKLFGEM---------VCAGISPDHVVYGTLAAELC 693

Query: 265 KEGFVDKAKELFLQ----MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           K G   +A E+  +    ++ +    +V  Y   + G   A     A   + +M+  G  
Sbjct: 694 KSGRSARALEILREGRESLRSEAWGDEV--YRFAVDGLLEAGKMEMALGFVRDMVRGGQL 751

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLE 347
           P       ++  LCK+G+  EA  +LE
Sbjct: 752 PAPERCASLVAGLCKSGQGGEARAVLE 778



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 69/275 (25%), Positives = 114/275 (41%), Gaps = 72/275 (26%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHTIVALN 233
           P  + FTS+I+G C   R  EA  +F+ ++   C  P    Y+ LI+ L +   T     
Sbjct: 8   PAPLLFTSVIQGWCNVGRTFEAVKIFSLMEE--CHSPYPDVYNVLIDSLSKRQETEAVKK 65

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT--- 290
           + + M +        C P++ T+TTI+ GLCK G +D+A+ +  +M+ + I P   T   
Sbjct: 66  MVQVMVDRG------CFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATSSF 119

Query: 291 ----------------------------YNSLIHGFCYANDWNEA--------------- 307
                                       YN ++   C A   ++A               
Sbjct: 120 LAHELCLRGSMERAFQLLEIMPVANSSAYNIVVVALCKAARVDDALELARTMSEKRIPLA 179

Query: 308 ----NCLLIEMMDQG-------------VQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
               + +L+ +MD G              +P +VT NV+++  C  G++D+A  LL  M 
Sbjct: 180 AGSLDSVLVGLMDSGRIDEALQVYRENRREPCLVTLNVLLEGFCSRGQVDKARELLRAMP 239

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
                P+  ++ T++DG C  GRV  A  LF   E
Sbjct: 240 DEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDRE 274



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 85/178 (47%), Gaps = 11/178 (6%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P  + ++++I G C  G T  A+ +F  M   +        P    Y  +ID L K 
Sbjct: 5   GIFPAPLLFTSVIQGWCNVGRTFEAVKIFSLMEECH-------SPYPDVYNVLIDSLSKR 57

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
              +  K++   M D+   PD  T+ +++ G C A   +EA  ++ EM  + + P   T 
Sbjct: 58  QETEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRSRMIPPYFATS 117

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + +  ELC  G M+ A +LLE+M +     N+S ++ ++   C   RV+ A EL  +M
Sbjct: 118 SFLAHELCLRGSMERAFQLLEIMPV----ANSSAYNIVVVALCKAARVDDALELARTM 171



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 59/108 (54%), Gaps = 1/108 (0%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  + I P  + + S+I G+C      EA   +  +M++   P    +NV++D L K  +
Sbjct: 1   MFQQGIFPAPLLFTSVIQGWCNVGRTFEA-VKIFSLMEECHSPYPDVYNVLIDSLSKRQE 59

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +   +++++M+ RG  P++ TF+T++ G C  G+++ A+ +   M S
Sbjct: 60  TEAVKKMVQVMVDRGCFPDSFTFTTILCGLCKAGKMDEAELVMDEMRS 107


>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 585

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 107/348 (30%), Positives = 182/348 (52%), Gaps = 46/348 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ +L   P+PP    FN + G L K+KHY TVLSL +++   G+ P+L+  NI
Sbjct: 68  DDAVSLFNRLLRQNPTPPAF-EFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNI 126

Query: 148 LINCFCKMG------------------------RVSHGFVVLG---------------RI 168
           LI CFC++G                        +VS+G ++ G               R+
Sbjct: 127 LIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV 186

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                  +AV + ++I G+C +  + +A  L++++ + G  PNV+TYS LI+G    G  
Sbjct: 187 DGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKL 246

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A++LF ++   N       KP+  T+  ++DG CK+  + + K +F  M  + I PDV
Sbjct: 247 KDAIDLFNKIILEN------IKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDV 300

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYNSL+ G+C   + N A  +   M   GV PD+ ++N++++  CK  K+D+A  L   
Sbjct: 301 VTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKAMNLFNE 360

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  + + PN  T+++L+DG   +GR+++A +L   M   G    + +Y
Sbjct: 361 MHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTY 408



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 156/309 (50%), Gaps = 22/309 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M++   SP  +T   L+ G     K  D +  LF ++    + PD YT+NI
Sbjct: 212 NDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI-DLFNKIILENIKPDGYTFNI 270

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK  ++  G  V   +++    PD V + SL+ G C    +  A ++F  +   G
Sbjct: 271 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGG 330

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ +Y+ LING C+      A+NLF EM   N        PN VTY ++IDGL K G
Sbjct: 331 VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKN------IIPNVVTYNSLIDGLSKSG 384

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A +L  QM D+ + P+++TYNS+I      +  ++A  L+ +  DQG+QP + T+ 
Sbjct: 385 RISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYT 444

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK               + G +   +T++ ++ GFC  G  + A  L   M+  
Sbjct: 445 ILIDGLCK---------------VEGYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDS 489

Query: 388 GCKHTVFSY 396
            C     +Y
Sbjct: 490 SCIPNAVTY 498



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/260 (33%), Positives = 144/260 (55%), Gaps = 6/260 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   + K KH +    L+  + S G+ P++ TY+ LI+ F  +G++     +  +I+
Sbjct: 198 YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 257

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   F  L+ G C + ++ E   +F  +   G  P+V+TY++L++G C      
Sbjct: 258 LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCLVKEVN 317

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++F  MA G    GV   P+  +Y  +I+G CK   VDKA  LF +M  KNI P+VV
Sbjct: 318 TAKSIFNTMAQG----GV--NPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVV 371

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI G   +   + A  L+ +M D+GV P+++T+N I+D L K  ++D+A  L+   
Sbjct: 372 TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF 431

Query: 350 ILRGVNPNTSTFSTLMDGFC 369
             +G+ P+  T++ L+DG C
Sbjct: 432 KDQGIQPSMYTYTILIDGLC 451



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 135/278 (48%), Gaps = 45/278 (16%)

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV----- 212
           V     +  R+LR   TP A  F  ++  L          +L  K++  G KPN+     
Sbjct: 67  VDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHTVLSLSQKMEFRGIKPNLFNCNI 126

Query: 213 ----------------------------------ITYSTLINGLCRTGHTIVALNLFEEM 238
                                             ++Y TLI+GLC+ G T  AL+L + +
Sbjct: 127 LIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRV 186

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                  G + + N V Y T+I G+CK+  V+ A +L+ +M  K I+P+VVTY++LI GF
Sbjct: 187 D------GKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGF 240

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                  +A  L  +++ + ++PD  TFN+++D  CK+ KM E   +  +M+ +G+ P+ 
Sbjct: 241 FVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDV 300

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+++LMDG+CL   VN AK +F +M   G    + SY
Sbjct: 301 VTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSY 338



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/215 (29%), Positives = 107/215 (49%), Gaps = 21/215 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N+L     K K  D  ++LF  ++   + P++ TYN LI+   K GR+S+   +
Sbjct: 333 PDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQL 392

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + ++      P+ + + S+I  L    ++ +A AL TK K  G +P++ TY+ LI+GLC+
Sbjct: 393 VDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCK 452

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                + +N                     TY  +I G CK+G  D+A  L  +MKD + 
Sbjct: 453 VEGYDITVN---------------------TYNVMIHGFCKKGLFDEALSLLSKMKDSSC 491

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            P+ VTY   I      N+ ++A  L  EM+ +G+
Sbjct: 492 IPNAVTYEITIRSLLDNNENDKAEKLFREMITRGL 526



 Score = 40.0 bits (92), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/143 (18%), Positives = 66/143 (46%), Gaps = 4/143 (2%)

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           ++ K N ++Y++          VD A  LF ++  +N  P    +N ++     +  ++ 
Sbjct: 45  LLTKINFISYSSTSTTFHSNNDVDDAVSLFNRLLRQNPTPPAFEFNKILGSLVKSKHYHT 104

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNG----KMDEASRLLELMILRGVNPNTSTFS 362
              L  +M  +G++P++   N+++   C+ G    ++ +A    + ++  G + +  ++ 
Sbjct: 105 VLSLSQKMEFRGIKPNLFNCNILIYCFCQLGLIPCQIHQAFLFHDKLVALGFHLDQVSYG 164

Query: 363 TLMDGFCLTGRVNHAKELFVSME 385
           TL+ G C  G    A +L   ++
Sbjct: 165 TLIHGLCKVGETRAALDLLQRVD 187


>gi|225436658|ref|XP_002276327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Vitis vinifera]
          Length = 728

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 113/343 (32%), Positives = 170/343 (49%), Gaps = 42/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F   L+    P   T  N L   LA++++Y    S+++R+    + P   + + L
Sbjct: 57  EAVSLFHSALDFNLLPSWATC-NFLVDALARSRNYGLAFSVYRRMTHVDVLPSFGSLSAL 115

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFT---------------------------------- 174
           I CF    +   GF V+G +L+  FT                                  
Sbjct: 116 IECFADAQKPQLGFGVVGLVLKRGFTVNVFIMNIVLKGLCRNGGVFEAMGLIREMGRKSV 175

Query: 175 -PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD V++ +LI GLC   ++ EA  L  +++A GC PN +T +TL++GLC+ G    A+ 
Sbjct: 176 SPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDEAME 235

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L E M     K G     + V Y T+I G C  G +D+ KELF +M  K I+ +VVTY+ 
Sbjct: 236 LLEAMK----KKGF--DADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSC 289

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+HG C    W EAN +L  M + G+ PDVVT+  ++D LCK+G+   A  LL LM+ +G
Sbjct: 290 LVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDGRATHAMDLLNLMVEKG 349

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             P+  T++ L+ G C  G V  A ++   M   G K  V +Y
Sbjct: 350 EEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTY 392



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 154/306 (50%), Gaps = 9/306 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           +FD ML    S   +T   L+ G   L + K  +TVL+    +   G+ PD+ TY  LI+
Sbjct: 271 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLN---AMAEHGIHPDVVTYTGLID 327

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             CK GR +H   +L  ++     P  V +  L+ GLC E  +++A  +   +   G K 
Sbjct: 328 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 387

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +V+TY+TL+ GLC  G    AL LF  M +         +PN  T+  +I GLCKEG + 
Sbjct: 388 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN----CLEPNVFTFNMLIGGLCKEGRLT 443

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA ++  +M  K    ++VTYN L+ G   A    EA  L  +++D G  P+  T+++++
Sbjct: 444 KAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILI 503

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           D  CK   ++ A  L   M   G+NP    ++TLM   C  G +  AK LF  M +  C+
Sbjct: 504 DGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCE 563

Query: 391 HTVFSY 396
             + S+
Sbjct: 564 PDIISF 569



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 151/302 (50%), Gaps = 9/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYN 146
           +AF I   M+  +     + ++N L   L      D  L LF  +  N   L P+++T+N
Sbjct: 372 DAFKILRMMIE-KGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFN 430

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI   CK GR++    +  ++++     + V +  L+ G     +I EA  L+ ++   
Sbjct: 431 MLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDL 490

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN  TYS LI+G C+     +A  LF EM            P    Y T++  LCKE
Sbjct: 491 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHG------LNPALFDYNTLMASLCKE 544

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++AK LF +M + N  PD++++N++I G   A D+     L ++M++ G++PD +TF
Sbjct: 545 GSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTF 604

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + +++ L K G++DEA   LE M+  G  P+   + +L+ G    G       L   M +
Sbjct: 605 STLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA 664

Query: 387 MG 388
            G
Sbjct: 665 KG 666



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 7/283 (2%)

Query: 88  NEAFCIFDYML-NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +F+ M  N     P + +FN+L G L K       + + +++   G   +L TYN
Sbjct: 406 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 465

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +L+    K G++     +  ++L   F P++  ++ LI G C    +  A  LF +++  
Sbjct: 466 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 525

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P +  Y+TL+  LC+ G    A +LF+EM N N      C+P+ +++ T+IDG  K 
Sbjct: 526 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNAN------CEPDIISFNTMIDGTLKA 579

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G     KEL ++M +  + PD +T+++LI+      + +EA   L  M+  G  PD + +
Sbjct: 580 GDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVY 639

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           + ++  L   G   E   LL  M  +G   +    ST++   C
Sbjct: 640 DSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 682



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  M N     P + SFN +     K   +  V  L  ++   GL PD  T++ L
Sbjct: 549 QAKSLFQEMGNAN-CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 607

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   K+G +      L R++ S FTPDA+ + SL+KGL ++    E   L  ++ A G 
Sbjct: 608 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 667

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFE 236
             +    ST++  LC   H+I  +++ E
Sbjct: 668 VLDRKIVSTILTCLC---HSIQEVDVME 692


>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
 gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 747

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 172/307 (56%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +FD M   +   P + ++N L     K +  D    L + +   GL P+L +YN++I
Sbjct: 224 ALTLFDKM-ETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVI 282

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C+ GR+     VL  + R  ++ D V + +LIKG C E    +A  +  ++   G  
Sbjct: 283 NGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLT 342

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VITY++LI+ +C+ G+   A+   ++M     +   +C PN  TYTT++DG  ++G++
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQM-----RVRGLC-PNERTYTTLVDGFSQKGYM 396

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A  +  +M D   +P VVTYN+LI+G C      +A  +L +M ++G+ PDVV+++ +
Sbjct: 397 NEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTV 456

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   C++  +DEA R+   M+ +G+ P+T T+S+L+ GFC   R   A +L+  M  +G 
Sbjct: 457 LSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516

Query: 390 KHTVFSY 396
               F+Y
Sbjct: 517 PPDEFTY 523



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N++   L +      V  +   +N  G   D  TYN LI  +CK G      V+
Sbjct: 273 PNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR   TP  + +TSLI  +C    +  A     +++  G  PN  TY+TL++G  +
Sbjct: 333 HAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQ 392

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  +  EM N NG       P+ VTY  +I+G C  G ++ A  +   MK+K +
Sbjct: 393 KGYMNEAYRVLREM-NDNG-----FSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGL 446

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDVV+Y++++ GFC + D +EA  +  EM+++G++PD +T++ ++   C+  +  EA  
Sbjct: 447 SPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E M+  G+ P+  T++ L++ +C+ G +  A +L   M   G    V +Y
Sbjct: 507 LYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTY 558



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/288 (30%), Positives = 150/288 (52%), Gaps = 7/288 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR-VSHGFVVLGRI 168
           F+L+    ++    D  LS+     + G  P + +YN +++   +  R +S    V   +
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L S  +P+   +  LI+G C    I  A  LF K++  GC PNV+TY+TLI+G C+    
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                L   MA          +PN ++Y  +I+GLC+EG + +   +  +M  +  + D 
Sbjct: 257 DDGFKLLRSMALKG------LEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDE 310

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+LI G+C   ++++A  +  EM+  G+ P V+T+  ++  +CK G M+ A   L+ 
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQ 370

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M +RG+ PN  T++TL+DGF   G +N A  +   M   G   +V +Y
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 157/302 (51%), Gaps = 23/302 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K  + +  +    ++   GL P+  TY  L++ F + G ++  + V
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRV 402

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  + F+P  V + +LI G C   ++ +A A+   +K  G  P+V++YST+++G CR
Sbjct: 403 LREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCR 462

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     AL +  EM           KP+T+TY+++I G C++    +A +L+ +M    +
Sbjct: 463 SYDVDEALRVKREMVEKG------IKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGL 516

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY +LI+ +C   D  +A  L  EM+++GV PDVVT++V+++ L K  +  EA R
Sbjct: 517 PPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKR 576

Query: 345 LLELMILRGVNPNTSTFSTLMD---------------GFCLTGRVNHAKELFVSMESMGC 389
           LL  +      P+  T+ TL++               GFC+ G +  A ++F SM  +G 
Sbjct: 577 LLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESM--LGK 634

Query: 390 KH 391
            H
Sbjct: 635 NH 636



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 150/293 (51%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + S+N +     ++K +     ++FK +  + + P+++TYNILI  FC  G +     
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALT 226

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++      P+ V + +LI G C   +I +   L   +   G +PN+I+Y+ +INGLC
Sbjct: 227 LFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLC 286

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G       +  EM N  G        + VTY T+I G CKEG   +A  +  +M    
Sbjct: 287 REGRMKEVSFVLTEM-NRRG-----YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P V+TY SLIH  C A + N A   L +M  +G+ P+  T+  ++D   + G M+EA 
Sbjct: 341 LTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAY 400

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+L  M   G +P+  T++ L++G C+TG++  A  +   M+  G    V SY
Sbjct: 401 RVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 145/310 (46%), Gaps = 22/310 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+ +   M N     P + ++N L      T   +  +++ + +   GL PD+ +Y+ 
Sbjct: 397 NEAYRVLREM-NDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYST 455

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ FC+   V     V   ++     PD + ++SLI+G C + R  EA  L+ ++   G
Sbjct: 456 VLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVG 515

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY+ LIN  C  G    AL L  EM       GV+  P+ VTY+ +I+GL K+ 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLEKALQLHNEMVEK----GVL--PDVVTYSVLINGLNKQS 569

Query: 268 FVDKAKELFLQMKDKNINPDVVTYN---------------SLIHGFCYANDWNEANCLLI 312
              +AK L L++  +   P  VTY+               SLI GFC      EA+ +  
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFE 629

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M+ +  +PD   +N+++   C+ G + +A  L + M+  G   +T T   L+      G
Sbjct: 630 SMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEG 689

Query: 373 RVNHAKELFV 382
           +VN    + V
Sbjct: 690 KVNELNSVIV 699



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 71/226 (31%), Positives = 122/226 (53%), Gaps = 8/226 (3%)

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-V 230
           C++  +V F  ++K     S I +A ++    +A G  P V++Y+ +++   R+   I  
Sbjct: 130 CYSTSSV-FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A N+F+EM            PN  TY  +I G C  G +D A  LF +M+ K   P+VVT
Sbjct: 189 AENVFKEMLESQ------VSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN+LI G+C     ++   LL  M  +G++P+++++NV+++ LC+ G+M E S +L  M 
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMN 302

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RG + +  T++TL+ G+C  G  + A  +   M   G   +V +Y
Sbjct: 303 RRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITY 348



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 115/285 (40%), Gaps = 22/285 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M+     P  +T  +L+ G   + +       L++ +   GL PD +TY  
Sbjct: 467 DEALRVKREMVEKGIKPDTITYSSLIQG-FCEQRRTKEACDLYEEMLRVGLPPDEFTYTA 525

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +C  G +     +   ++     PD V ++ LI GL  +SR  EA  L  KL    
Sbjct: 526 LINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEE 585

Query: 208 CKPNVITYSTLIN---------------GLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
             P+ +TY TLI                G C  G    A  +FE M   N K      P+
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHK------PD 639

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y  +I G C+ G + KA  L+ +M         VT  +L+         NE N +++
Sbjct: 640 GTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIV 699

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            ++      +     V+++   + G MD    +L  M   G  PN
Sbjct: 700 HVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 75/177 (42%), Gaps = 36/177 (20%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS-------------- 293
           +C   +  +  ++    +   +DKA  +    +     P V++YN+              
Sbjct: 129 LCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 294 ----------------------LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
                                 LI GFC+A + + A  L  +M  +G  P+VVT+N ++D
Sbjct: 189 AENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLID 248

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             CK  K+D+  +LL  M L+G+ PN  +++ +++G C  GR+     +   M   G
Sbjct: 249 GYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRG 305


>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
 gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
          Length = 432

 Score =  192 bits (487), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/309 (33%), Positives = 164/309 (53%), Gaps = 10/309 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNI 147
           +A   FD  L +  + P + S+  L   L K    D    LF+++  + G  P+ +TYN 
Sbjct: 78  QALEHFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNA 137

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK  R+     V+    +  F PD V + +L+  L    R+ EA A FT++   G
Sbjct: 138 LVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEG 197

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +++++ +I GLCR      AL +F EM + +        PN VTY+ +IDGLCK  
Sbjct: 198 YVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD------FHPNLVTYSVVIDGLCKSD 251

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A++L  +M  +   PD+V Y  L+ GF  A   + A  LL  M+ QG  PDVVT+ 
Sbjct: 252 QLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYT 311

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D+LCK G++D+A  +   ++    +PN  T+S L+ G+C   RV+   ++   M  M
Sbjct: 312 VVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKV---MREM 368

Query: 388 GCKHTVFSY 396
            C+  V +Y
Sbjct: 369 ACRPNVVTY 377



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 154/295 (52%), Gaps = 8/295 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N+L          D   SL + ++  G+  +  T +I++   C+ GRV+    
Sbjct: 22  PASSVTYNVLIRGFCNASDLDAAFSLLREMDVEGMQCNDRTTSIILQGLCRCGRVAQALE 81

Query: 164 VLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLING 221
                L      PD V++T+LI GLC   R+  A  LF K+  A GC+PN  TY+ L++G
Sbjct: 82  HFDASLELAHAQPDVVSYTTLINGLCKLGRVDAAFDLFRKMVAAGGCRPNAFTYNALVDG 141

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+      A  +  E    +        P+ VTY T++  L + G VD+A   F QM +
Sbjct: 142 LCKQDRLDAARAVITEARKRD------FAPDVVTYNTLMAALFQLGRVDEALATFTQMTE 195

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           +   P +V++N++I G C A    +A  +  EM+D+   P++VT++V++D LCK+ ++DE
Sbjct: 196 EGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDE 255

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A +LL+ M+  G  P+   ++ L+ GF   GR++ A  L   M S GC   V +Y
Sbjct: 256 AQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTY 310



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/264 (30%), Positives = 135/264 (51%), Gaps = 9/264 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N L   L +    D  L+ F ++   G  P L ++N +I   C+  R++ 
Sbjct: 161 RDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLAD 220

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   ++   F P+ V ++ +I GLC   ++ EA  L  ++ + GC+P+++ Y+ L+ 
Sbjct: 221 ALEVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVL 280

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G    G    AL L   M +        C P+ VTYT +ID LCK G VD A E+F ++ 
Sbjct: 281 GFSAAGRLDSALGLLRRMVSQG------CIPDVVTYTVVIDKLCKVGRVDDAHEIFRELV 334

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
               +P+VVTY++LI G+C A+  +E   ++ EM     +P+VVT+N ++  L    + +
Sbjct: 335 ANKCSPNVVTYSALIGGYCRASRVDEGGKVMREM---ACRPNVVTYNTMIWGLSMVDRNE 391

Query: 341 EASRLLELMILRGVNPNTSTFSTL 364
           EA  +   M   G  P+  T+  L
Sbjct: 392 EAYGMFREMSECGFVPDARTYRGL 415



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 142/301 (47%), Gaps = 9/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F  M+      P   ++N L   L K    D   ++          PD+ TYN 
Sbjct: 113 DAAFDLFRKMVAAGGCRPNAFTYNALVDGLCKQDRLDAARAVITEARKRDFAPDVVTYNT 172

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+    ++GRV        ++    + P  V+F ++I GLC   R+ +A  +F ++    
Sbjct: 173 LMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRD 232

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++TYS +I+GLC++     A  L + M +        C+P+ V YT ++ G    G
Sbjct: 233 FHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEG------CRPDLVAYTPLVLGFSAAG 286

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  +M  +   PDVVTY  +I   C     ++A+ +  E++     P+VVT++
Sbjct: 287 RLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKCSPNVVTYS 346

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C+  ++DE  +++  M  R   PN  T++T++ G  +  R   A  +F  M   
Sbjct: 347 ALIGGYCRASRVDEGGKVMREMACR---PNVVTYNTMIWGLSMVDRNEEAYGMFREMSEC 403

Query: 388 G 388
           G
Sbjct: 404 G 404



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 68/206 (33%), Positives = 100/206 (48%), Gaps = 10/206 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ M++ R   P L +++++   L K+   D    L  R+ S G  PDL  Y  L
Sbjct: 220 DALEVFNEMID-RDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPL 278

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  F   GR+     +L R++     PD V +T +I  LC   R+ +A  +F +L A  C
Sbjct: 279 VLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVGRVDDAHEIFRELVANKC 338

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+TYS LI G CR         +  EMA         C+PN VTY T+I GL     
Sbjct: 339 SPNVVTYSALIGGYCRASRVDEGGKVMREMA---------CRPNVVTYNTMIWGLSMVDR 389

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSL 294
            ++A  +F +M +    PD  TY  L
Sbjct: 390 NEEAYGMFREMSECGFVPDARTYRGL 415


>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
 gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
          Length = 471

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/284 (35%), Positives = 152/284 (53%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +   L +          F  + S G  PD+  YN L++   K G+      +
Sbjct: 182 PDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKL 241

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++   + PD V + S++ GL  +S + EA  +F K+ A GC PN  TYS +++G CR
Sbjct: 242 FKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCR 301

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + EEM+    K G V  P+ VTY  ++DGLCK   VDKA ELF  M D   
Sbjct: 302 AKKVDDAHKVLEEMS----KIGAV--PDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGC 355

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+V+Y+ +++G C  N  ++A  L   M+++ + PDVVTFN++MD LCK GK+DEA  
Sbjct: 356 APDIVSYSVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEAKD 415

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL+ M   G  P+   ++TLM+G    GR   A  L  +M+  G
Sbjct: 416 LLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKG 459



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 157/290 (54%), Gaps = 8/290 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L   L K ++ +    L + + S G  PD  TYN +++  C+MG+VS        
Sbjct: 150 VAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDS 209

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +    ++PD VA+  L+  L  E +  EA  LF  + A G  P+ +TY++++ GL R  +
Sbjct: 210 MPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSN 269

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A  +F++M A+G       C PN  TY+ ++ G C+   VD A ++  +M      P
Sbjct: 270 MDEAEEMFKKMVASG-------CAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVP 322

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTYN L+ G C  N  ++A+ L   M+D G  PD+V+++V+++ LCK  K+ +A  L 
Sbjct: 323 DVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLF 382

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + MI R + P+  TF+ LMDG C  G+++ AK+L   M   GC     +Y
Sbjct: 383 DRMIERKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAY 432



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/298 (32%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           MR   P   +F ++     K         LF+++   G+ PD   YNILI+ + K GRV 
Sbjct: 1   MRECSPNRYTFRVVLKSFCKQGKLRDGYKLFEQMLDNGISPDGIEYNILIDGYAKKGRVD 60

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +   ++     P    + SL+   C E+++ EA  LF  +   G +P+V+TYST+I
Sbjct: 61  EANRLYEEMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTII 120

Query: 220 NGLCRTGHTIVALN-LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           +GLC+TG    AL  LF +M          C  NTV Y  +I+GLCK+  +++A +L  +
Sbjct: 121 SGLCKTGKVTEALEMLFHKMIERG------CSANTVAYNALINGLCKDENIERAYKLLEE 174

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K   PD +TYN+++ G C     +EA      M  +G  PDVV +N ++D L K GK
Sbjct: 175 MASKGYVPDNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGK 234

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            DEA +L + +I +G  P+T T+++++ G      ++ A+E+F  M + GC     +Y
Sbjct: 235 TDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATY 292



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 124/235 (52%), Gaps = 7/235 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  ++     P  +T  ++L G LA+  + D    +FK++ ++G  P+  TY+I
Sbjct: 236 DEAMKLFKDVIAKGYMPDTVTYNSILLG-LARKSNMDEAEEMFKKMVASGCAPNGATYSI 294

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  C+  +V     VL  + +    PD V +  L+ GLC  + + +A  LF+ +   G
Sbjct: 295 VLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNG 354

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++++YS ++NGLC+T     A  LF+ M            P+ VT+  ++DGLCK G
Sbjct: 355 CAPDIVSYSVVLNGLCKTNKVHDARVLFDRMIERK------LVPDVVTFNILMDGLCKAG 408

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            +D+AK+L  QM      PD V YN+L++G        +A+ L   M ++G   D
Sbjct: 409 KLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFLSD 463


>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g16640, mitochondrial; Flags: Precursor
 gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
 gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 504

 Score =  191 bits (485), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 186/344 (54%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +++  +F +M+  RP  P +  F+ L   ++K K YD V+ L++++   G+  +L T NI
Sbjct: 63  DDSLDLFFHMVQCRP-LPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+NCFC+  ++S     LG++++    P  V F SL+ G C   R+ +A  +F ++   G
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC--- 264
            KPNV+ Y+T+I+GLC++     AL+L   M     K G+   P+ VTY ++I GLC   
Sbjct: 182 YKPNVVIYNTIIDGLCKSKQVDNALDLLNRME----KDGI--GPDVVTYNSLISGLCSSG 235

Query: 265 --------------------------------KEGFVDKAKELFLQMKDKNINPDVVTYN 292
                                           KEG V +A+E + +M  ++++PD+VTY+
Sbjct: 236 RWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSLDPDIVTYS 295

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            LI+G C  +  +EA  +   M+ +G  PDVVT++++++  CK+ K++   +L   M  R
Sbjct: 296 LLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQR 355

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GV  NT T++ L+ G+C  G++N A+E+F  M   G    + +Y
Sbjct: 356 GVVRNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITY 399



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 168/335 (50%), Gaps = 42/335 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+ M    P +  +N +   L K+K  D  L L  R+   G+ PD+ TYN L
Sbjct: 169 DALYMFDQMVGM-GYKPNVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSL 227

Query: 149 INCFC-----------------------------------KMGRVSHGFVVLGRILRSCF 173
           I+  C                                   K GRVS        ++R   
Sbjct: 228 ISGLCSSGRWSDATRMVSCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMIRRSL 287

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD V ++ LI GLC  SR+ EA  +F  + + GC P+V+TYS LING C++      + 
Sbjct: 288 DPDIVTYSLLIYGLCMYSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMK 347

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           LF EM+    + GVV   NTVTYT +I G C+ G ++ A+E+F +M    ++P+++TYN 
Sbjct: 348 LFCEMS----QRGVV--RNTVTYTILIQGYCRAGKLNVAEEIFRRMVFCGVHPNIITYNV 401

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+HG C      +A  +L +M   G+  D+VT+N+I+  +CK G++ +A  +   +  +G
Sbjct: 402 LLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGMCKAGEVADAWDIYCSLNCQG 461

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + P+  T++T+M G    G    A  LF  M+  G
Sbjct: 462 LMPDIWTYTTMMLGLYKKGLRREADALFRKMKEDG 496



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 59/128 (46%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D + +LF  M      P +  ++ L+        ++    L  +M   G+  ++ T N+
Sbjct: 62  LDDSLDLFFHMVQCRPLPSIADFSRLLSAISKMKKYDVVIYLWEQMQMLGIPHNLCTCNI 121

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C+  ++  A   L  MI  G  P+  TF +L++GFC   RV  A  +F  M  MG
Sbjct: 122 LLNCFCRCSQLSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMVGMG 181

Query: 389 CKHTVFSY 396
            K  V  Y
Sbjct: 182 YKPNVVIY 189


>gi|222613080|gb|EEE51212.1| hypothetical protein OsJ_32033 [Oryza sativa Japonica Group]
          Length = 1144

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 169/312 (54%), Gaps = 10/312 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P+L TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI   C  GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L + M +  G     C P+ V+YTT+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG +DKA   + +M D+ I P+VVTY+S+I   C A   ++A  +L  M+  GV P+  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR   A+++F SM
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 331 TKRGLKPEITTY 342



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 109/348 (31%), Positives = 176/348 (50%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++A+  +  ML+ R   P + +++ +   L K +  D  + +   +   G+
Sbjct: 212 EGDL-----DKAYGTYHEMLD-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN +++ +C  G+       L ++      PD V + SL+  LC   R  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG--------------- 243
           +F  +   G KP + TY TL+ G    G  +    L + M   NG               
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVR-NGIHPNHYVFSILICAY 384

Query: 244 -KFGVVCK--------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            K G V +              P+TVTY T+I  LCK G V+ A   F QM D+ ++P  
Sbjct: 385 AKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGN 444

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           + YNSLIH  C  + W++A  L++EM+D+G+  D + FN I+D  CK G++ E+ +L +L
Sbjct: 445 IVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDL 504

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  GV P+  T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 505 MVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C  + QG +     ++A  +F  M     +P  +T +  + G L K+   +  +  F+++
Sbjct: 382 CAYAKQGKV-----DQAMLVFSKMRQQGLNPDTVT-YGTVIGILCKSGRVEDAMRYFEQM 435

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
               L P    YN LI+  C   +      ++  +L      D + F S+I   C E R+
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           +E+  LF  +   G KP++ITYSTLI+G C  G    A  L   M +      V  KP+ 
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS------VGMKPDC 549

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY T+I+G CK   ++ A  LF +M+   ++PD++TYN ++ G         A  L + 
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           + + G Q ++ T+N+I+  LCKN   DEA R+ + + L  +   T TF+ ++      GR
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LF ++ + G    V +Y
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTY 692



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G+V    +V  ++ +    PD V + ++I  LC   R+ +A   F ++     
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  I Y++LI+ LC       A  L  EM +       +C  +T+ + +IID  CKEG 
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG-----IC-LDTIFFNSIIDSHCKEGR 494

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TY++LI G+C A   +EA  LL  M+  G++PD VT+N 
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  CK  +M++A  L   M   GV+P+  T++ ++ G   T R   AKEL+V +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 615 TQLELSTY 622



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ M++ R SP  +  +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GRV     +   ++R    PD + +++LI G C   ++ EA  L   + + G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+TLING C+      AL LF EM +     GV   P+ +TY  I+ GL +   
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKEL++ + +     ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN+
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+ DEA  L   +   G+ P+  T+S + +     G +    +LF+SME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 389 C 389
           C
Sbjct: 720 C 720



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 143/320 (44%), Gaps = 18/320 (5%)

Query: 67  EQFLKERCKSSGQGDITAITPNEAFCIFD-------YMLNMRPSPPPLTS--FNLLFGCL 117
           EQ + ER      G+I   +   + CIFD        +L M      L +  FN +    
Sbjct: 433 EQMIDERLSP---GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
            K         LF  +   G+ PD+ TY+ LI+ +C  G++     +L  ++     PD 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V + +LI G C  SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +     +  +       TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I  
Sbjct: 610 ITESGTQLELS------TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 663

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                  +EA  L   +   G+ PDV T++++ + L + G ++E   L   M   G   N
Sbjct: 664 LLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTAN 723

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           +   ++++      G +  A
Sbjct: 724 SRMLNSIVRKLLQRGDITRA 743



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 668

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF  +    + PDV TY+ +           E + L + M + G   +    N
Sbjct: 669 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLN 728

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ +L + G +  A   L ++  +  +   ST S  +D
Sbjct: 729 SIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
          Length = 1380

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 167/321 (52%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K       +   +R+ + G  PD +TYN +I+ +CK+  V     +
Sbjct: 254 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 313

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   +   F PD V + SLI GLCAE  +  A  LF + +A G KP+++ Y++L+ GLC 
Sbjct: 314 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 373

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G  + AL +  EMA               NG  K G +                P+  T
Sbjct: 374 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 433

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+IDG CK   +D A +L  +M +  I PD +TYNS+++G C A   NE N    EM+
Sbjct: 434 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 493

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G  P+ +T+N++++  C++ KM+EAS+++  M   G++P+  +F+TL+ GFC  G + 
Sbjct: 494 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 553

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF  +E  G   T  ++
Sbjct: 554 GAYLLFQKLEEKGYSATADTF 574



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 167/309 (54%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD ML+    P  L +FN +   L K         L  ++   G+  +L+TYNI
Sbjct: 169 HDARQLFDQMLHTHVFPN-LAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 227

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   C+ GR+    V L   +R+   PD V + +LI+GLC +S   EA     ++   G
Sbjct: 228 WIRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 286

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+  TY+T+I+G C+      A  L ++        G V  P+ VTY ++I+GLC EG
Sbjct: 287 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK----GFV--PDQVTYCSLINGLCAEG 340

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ELF + + K I PD+V YNSL+ G C       A  ++ EM ++G  PD+ T+N
Sbjct: 341 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 400

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ LCK G + +A+ ++   I++G  P+  TF+TL+DG+C   +++ A +L   M   
Sbjct: 401 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 460

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 461 GIAPDTITY 469



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 177/390 (45%), Gaps = 57/390 (14%)

Query: 49  TAKLKESLRL-------TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMR 101
             +L E++RL        V D  +    ++  CK S         P EA      M+N  
Sbjct: 235 AGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKS--------MPQEAMHYLRRMMNQG 286

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
             P   T +N +     K         L K     G  PD  TY  LIN  C  G V   
Sbjct: 287 CLPDDFT-YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 345

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +          PD V + SL+KGLC +  I+ A  +  ++   GC P++ TY+ +ING
Sbjct: 346 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 405

Query: 222 LCRTGH----TIV-------------------------------ALNLFEEMANGNGKFG 246
           LC+ G+    T+V                               AL L E M     ++G
Sbjct: 406 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM----WEYG 461

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           +   P+T+TY ++++GLCK G V++  E F +M  K  +P+ +TYN LI  FC +N   E
Sbjct: 462 IA--PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 519

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A+ ++++M  +G+ PD V+FN ++   C+NG ++ A  L + +  +G +    TF+TL+ 
Sbjct: 520 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG 579

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            F     ++ A+++F  M S G +   ++Y
Sbjct: 580 AFSGKLNMHMAEKIFDEMLSKGHRADSYTY 609



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L         L +   +   G  PD+ TYNI+IN  CKMG +S   VV
Sbjct: 359 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 418

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +   +   + PD   F +LI G C   ++  A  L  ++  +G  P+ ITY++++NGLC+
Sbjct: 419 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 478

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G        F+EM          C PN +TY  +I+  C+   +++A ++ ++M  + +
Sbjct: 479 AGKVNEVNETFQEMILKG------CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 532

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD V++N+LI+GFC   D   A  L  ++ ++G      TFN ++        M  A +
Sbjct: 533 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 592

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + + M+ +G   ++ T+  L+DG C T  V+ A    V M   G
Sbjct: 593 IFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 636



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 11/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   L    ++D    ++ R+ + G+ PDL+T+ I +  FC   R      
Sbjct: 83  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH---- 138

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+LR+     AVA+ +++ GL A     +A  LF ++      PN+  ++ +++ LC
Sbjct: 139 IALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALC 198

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A  L  ++             N  TY   I GLC+ G + +A  L   M+   
Sbjct: 199 KRGDVLEAGLLLGKVIQRGMSI------NLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 252

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVTYN+LI G C  +   EA   L  MM+QG  PD  T+N I+D  CK   + EA+
Sbjct: 253 V-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 311

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+  + +G  P+  T+ +L++G C  G V  A ELF   ++ G K  +  Y
Sbjct: 312 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY 364



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M+   P + +FN L     K    D+ L L +R+   G+ PD  TYN ++N  CK G+V+
Sbjct: 424 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 483

Query: 160 HGFVVLGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                    IL+ C  P+ + +  LI+  C  +++ EA+ +  K+   G  P+ ++++TL
Sbjct: 484 EVNETFQEMILKGCH-PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 542

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G CR G    A  LF+++                T+ T+I     +  +  A+++F +
Sbjct: 543 IYGFCRNGDLEGAYLLFQKLEEKG------YSATADTFNTLIGAFSGKLNMHMAEKIFDE 596

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K    D  TY  LI G C   + + A   L+EM+ +G  P + TF  +++ L  N +
Sbjct: 597 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHR 656

Query: 339 MDEASRLLELMILRGVNPNT 358
           + +A  ++ +M+  GV P  
Sbjct: 657 VFQAVGIIHIMVKIGVVPEV 676



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           RL+   + P LY  +I    + + GR+        R+      P A A+ +++  L   +
Sbjct: 44  RLSPATIHP-LYVASI--RAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 100

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
              +A  ++ ++ A G  P++ T++  +   C T    +AL L   + +           
Sbjct: 101 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA-------- 152

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
             V Y T++ GL   G    A++LF QM   ++ P++  +N ++H  C   D  EA  LL
Sbjct: 153 --VAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 210

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +++ +G+  ++ T+N+ +  LC+ G++ EA RL++ M    V P+  T++TL+ G C  
Sbjct: 211 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 269

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
                A      M + GC    F+Y
Sbjct: 270 SMPQEAMHYLRRMMNQGCLPDDFTY 294



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN L G  +   +      +F  + S G   D YTY +LI+  CK   V   ++ L  +
Sbjct: 573 TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEM 632

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           ++  F P    F  +I  L    R+ +A  +   +   G  P V+   T++N 
Sbjct: 633 IKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA 683


>gi|83744090|gb|ABC42331.1| PPR protein [Oryza sativa Indica Group]
          Length = 506

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 116/342 (33%), Positives = 174/342 (50%), Gaps = 26/342 (7%)

Query: 59  TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
           T++DRA        R  S G  D        A  +FD +L  R    P+ S N     +A
Sbjct: 22  TIQDRA--------RVGSGGAED--------ALDVFDELLR-RGIGAPIRSLNGALADVA 64

Query: 119 KTKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           +      V S F R+   G   + P ++TY ILI C C  GR+  GF  LG +++  F  
Sbjct: 65  RDNPAAAV-SRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRV 123

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           + + F  L+KGLCA+ R  +A  +  + +   GC PNV +++ ++ GLC    +  AL L
Sbjct: 124 EPIIFNPLLKGLCADKRTDDAMDIVLRGMTELGCVPNVFSHTIILKGLCHENRSQEALEL 183

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
              MA+  G     C PN V+Y+T+ DGL K G  DKA   + +M D+ I P+VVTY+S+
Sbjct: 184 LHMMADDGGG----CLPNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSI 239

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I   C     ++A  +   M+  GV P+  T+  ++   C +G++ EA + LE M   GV
Sbjct: 240 IAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGV 299

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            PN  T+S+ MD  C  GR   A+++F SM   G K  + +Y
Sbjct: 300 EPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTY 341



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/289 (28%), Positives = 151/289 (52%), Gaps = 6/289 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ +   L K    D   + ++ +    + P++ TY+ +I   CK   +     V
Sbjct: 196 PNVVSYSTVTDGLLKGGDPDKAYATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEV 255

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++++  TP+   +TSL+ G C+  ++ EA     K+ + G +PNV+TYS+ ++ LC+
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F  M     K G+  KP+  TY++++ G   EG + +   LF  M   ++
Sbjct: 316 NGRCTEARKIFYSMV----KRGL--KPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   +N+LI+        +EA  +  +M  QG++P+ VT+N +++  CK  +M+ A  
Sbjct: 370 QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALA 429

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           L + M+  GV+PN  T++ ++ G   TGR   AKE +V +   G K  +
Sbjct: 430 LFQEMVSNGVSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSGKKDLI 478



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 84/294 (28%), Positives = 145/294 (49%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P + S  ++   L         L L   +  +  G  P++ +Y+ + +   K G     +
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVTDGLLKGGDPDKAY 218

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +L     P+ V ++S+I  LC    + +A  +  ++   G  PN  TY++L++G 
Sbjct: 219 ATYREMLDRRILPNVVTYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C +G    A+   E+M + NG      +PN VTY++ +D LCK G   +A+++F  M  +
Sbjct: 279 CSSGQLTEAIKFLEKMCS-NG-----VEPNVVTYSSFMDYLCKNGRCTEARKIFYSMVKR 332

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD+ TY+SL+HG+       E + L   M+   +QPD   FN ++    K GK+DEA
Sbjct: 333 GLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEA 392

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   M  +G+ PN  T++TL++G+C   R+ +A  LF  M S G      +Y
Sbjct: 393 MLVFSKMRHQGLKPNCVTYNTLINGYCKITRMENALALFQEMVSNGVSPNFITY 446



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 92/203 (45%), Gaps = 30/203 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++     L K         +F  +   GL PD+ TY+ L++ +   G +     +
Sbjct: 301 PNVVTYSSFMDYLCKNGRCTEARKIFYSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGL 360

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++S   PD   F +LI     + ++ EA  +F+K++  G KPN +TY+TLING C+
Sbjct: 361 FDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRHQGLKPNCVTYNTLINGYCK 420

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ------ 278
                 AL LF+EM + NG       PN +TY  ++ GL + G    AKE ++Q      
Sbjct: 421 ITRMENALALFQEMVS-NG-----VSPNFITYNIMLQGLFRTGRTGTAKEFYVQIIKSGK 474

Query: 279 ------------------MKDKN 283
                             M+D +
Sbjct: 475 KDLIEQGLLEELDDLFLSMEDND 497


>gi|18071404|gb|AAL58263.1|AC068923_5 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 1219

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 169/312 (54%), Gaps = 10/312 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P+L TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI   C  GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L + M +  G     C P+ V+YTT+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG +DKA   + +M D+ I P+VVTY+S+I   C A   ++A  +L  M+  GV P+  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR   A+++F SM
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 331 TKRGLKPEITTY 342



 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 107/347 (30%), Positives = 174/347 (50%), Gaps = 35/347 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++A+  +  ML+ R   P + +++ +   L K +  D  + +   +   G+
Sbjct: 212 EGDL-----DKAYGTYHEMLD-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN +++ +C  G+       L ++      PD V + SL+  LC   R  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------G 243
           +F  +   G KP + TY TL+ G    G  +    L + M                    
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 244 KFGVVCK--------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           K G V +              P+TVTY T+I  LCK G V+ A   F QM D+ ++P  +
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YNSLIH  C  + W++A  L++EM+D+G+  D + FN I+D  CK G++ E+ +L +LM
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  GV P+  T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C  + QG +     ++A  +F  M     +P  +T +  + G L K+   +  +  F+++
Sbjct: 382 CAYAKQGKV-----DQAMLVFSKMRQQGLNPDTVT-YGTVIGILCKSGRVEDAMRYFEQM 435

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
               L P    YN LI+  C   +      ++  +L      D + F S+I   C E R+
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           +E+  LF  +   G KP++ITYSTLI+G C  G    A  L   M +      V  KP+ 
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS------VGMKPDC 549

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY T+I+G CK   ++ A  LF +M+   ++PD++TYN ++ G         A  L + 
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           + + G Q ++ T+N+I+  LCKN   DEA R+ + + L  +   T TF+ ++      GR
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LF ++ + G    V +Y
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTY 692



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G+V    +V  ++ +    PD V + ++I  LC   R+ +A   F ++     
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  I Y++LI+ LC       A  L  EM +       +C  +T+ + +IID  CKEG 
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG-----ICL-DTIFFNSIIDSHCKEGR 494

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TY++LI G+C A   +EA  LL  M+  G++PD VT+N 
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  CK  +M++A  L   M   GV+P+  T++ ++ G   T R   AKEL+V +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 615 TQLELSTY 622



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ M++ R SP  +  +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GRV     +   ++R    PD + +++LI G C   ++ EA  L   + + G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+TLING C+      AL LF EM +          P+ +TY  I+ GL +   
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESSG------VSPDIITYNIILQGLFQTRR 599

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKEL++ + +     ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN+
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+ DEA  L   +   G+ P+  T+S + +     G +    +LF+SME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 389 C 389
           C
Sbjct: 720 C 720



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 143/320 (44%), Gaps = 18/320 (5%)

Query: 67  EQFLKERCKSSGQGDITAITPNEAFCIFD-------YMLNMRPSPPPLTS--FNLLFGCL 117
           EQ + ER      G+I   +   + CIFD        +L M      L +  FN +    
Sbjct: 433 EQMIDERLSP---GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
            K         LF  +   G+ PD+ TY+ LI+ +C  G++     +L  ++     PD 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V + +LI G C  SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +     +  +       TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I  
Sbjct: 610 ITESGTQLELS------TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 663

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                  +EA  L   +   G+ PDV T++++ + L + G ++E   L   M   G   N
Sbjct: 664 LLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTAN 723

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           +   ++++      G +  A
Sbjct: 724 SRMLNSIVRKLLQRGDITRA 743



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 668

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF  +    + PDV TY+ +           E + L + M + G   +    N
Sbjct: 669 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLN 728

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ +L + G +  A   L ++  +  +   ST S  +D
Sbjct: 729 SIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
          Length = 1393

 Score =  191 bits (485), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 167/321 (52%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K       +   +R+ + G  PD +TYN +I+ +CK+  V     +
Sbjct: 253 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 312

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   +   F PD V + SLI GLCAE  +  A  LF + +A G KP+++ Y++L+ GLC 
Sbjct: 313 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 372

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G  + AL +  EMA               NG  K G +                P+  T
Sbjct: 373 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 432

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+IDG CK   +D A +L  +M +  I PD +TYNS+++G C A   NE N    EM+
Sbjct: 433 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 492

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G  P+ +T+N++++  C++ KM+EAS+++  M   G++P+  +F+TL+ GFC  G + 
Sbjct: 493 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 552

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF  +E  G   T  ++
Sbjct: 553 GAYLLFQKLEEKGYSATADTF 573



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 167/309 (54%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD ML+    P  L +FN +   L K         L  ++   G+  +L+TYNI
Sbjct: 168 HDARQLFDQMLHTHVFPN-LAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 226

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   C+ GR+    V L   +R+   PD V + +LI+GLC +S   EA     ++   G
Sbjct: 227 WIRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 285

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+  TY+T+I+G C+      A  L ++        G V  P+ VTY ++I+GLC EG
Sbjct: 286 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK----GFV--PDQVTYCSLINGLCAEG 339

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ELF + + K I PD+V YNSL+ G C       A  ++ EM ++G  PD+ T+N
Sbjct: 340 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 399

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ LCK G + +A+ ++   I++G  P+  TF+TL+DG+C   +++ A +L   M   
Sbjct: 400 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 459

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 460 GIAPDTITY 468



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 177/390 (45%), Gaps = 57/390 (14%)

Query: 49  TAKLKESLRL-------TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMR 101
             +L E++RL        V D  +    ++  CK S         P EA      M+N  
Sbjct: 234 AGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKS--------MPQEAMHYLRRMMNQG 285

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
             P   T +N +     K         L K     G  PD  TY  LIN  C  G V   
Sbjct: 286 CLPDDFT-YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 344

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +          PD V + SL+KGLC +  I+ A  +  ++   GC P++ TY+ +ING
Sbjct: 345 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 404

Query: 222 LCRTGH----TIV-------------------------------ALNLFEEMANGNGKFG 246
           LC+ G+    T+V                               AL L E M     ++G
Sbjct: 405 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM----WEYG 460

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           +   P+T+TY ++++GLCK G V++  E F +M  K  +P+ +TYN LI  FC +N   E
Sbjct: 461 IA--PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 518

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A+ ++++M  +G+ PD V+FN ++   C+NG ++ A  L + +  +G +    TF+TL+ 
Sbjct: 519 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG 578

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            F     ++ A+++F  M S G +   ++Y
Sbjct: 579 AFSGKLNMHMAEKIFDEMLSKGHRADSYTY 608



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L         L +   +   G  PD+ TYNI+IN  CKMG +S   VV
Sbjct: 358 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 417

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +   +   + PD   F +LI G C   ++  A  L  ++  +G  P+ ITY++++NGLC+
Sbjct: 418 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 477

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G        F+EM          C PN +TY  +I+  C+   +++A ++ ++M  + +
Sbjct: 478 AGKVNEVNETFQEMILKG------CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 531

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD V++N+LI+GFC   D   A  L  ++ ++G      TFN ++        M  A +
Sbjct: 532 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 591

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + + M+ +G   ++ T+  L+DG C T  V+ A    V M   G
Sbjct: 592 IFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 635



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 11/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   L    ++D    ++ R+ + G+ PDL+T+ I +  FC   R      
Sbjct: 82  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH---- 137

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+LR+     AVA+ +++ GL A     +A  LF ++      PN+  ++ +++ LC
Sbjct: 138 IALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALC 197

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A  L  ++             N  TY   I GLC+ G + +A  L   M+   
Sbjct: 198 KRGDVLEAGLLLGKVIQRGMSI------NLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 251

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVTYN+LI G C  +   EA   L  MM+QG  PD  T+N I+D  CK   + EA+
Sbjct: 252 V-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 310

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+  + +G  P+  T+ +L++G C  G V  A ELF   ++ G K  +  Y
Sbjct: 311 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY 363



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 126/260 (48%), Gaps = 8/260 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M+   P + +FN L     K    D+ L L +R+   G+ PD  TYN ++N  CK G+V+
Sbjct: 423 MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVN 482

Query: 160 HGFVVLGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                    IL+ C  P+ + +  LI+  C  +++ EA+ +  K+   G  P+ ++++TL
Sbjct: 483 EVNETFQEMILKGCH-PNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTL 541

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G CR G    A  LF+++                T+ T+I     +  +  A+++F +
Sbjct: 542 IYGFCRNGDLEGAYLLFQKLEEKG------YSATADTFNTLIGAFSGKLNMHMAEKIFDE 595

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K    D  TY  LI G C   + + A   L+EM+ +G  P + TF  +++ L  N +
Sbjct: 596 MLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKGFIPSMSTFGRVINSLTVNHR 655

Query: 339 MDEASRLLELMILRGVNPNT 358
           + +A  ++ +M+  GV P  
Sbjct: 656 VFQAVGIIHIMVKIGVVPEV 675



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           RL+   + P LY  +I    + + GR+        R+      P A A+ +++  L   +
Sbjct: 43  RLSPATIHP-LYVASI--RAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 99

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
              +A  ++ ++ A G  P++ T++  +   C T    +AL L   + +           
Sbjct: 100 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPHRGA-------- 151

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
             V Y T++ GL   G    A++LF QM   ++ P++  +N ++H  C   D  EA  LL
Sbjct: 152 --VAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 209

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +++ +G+  ++ T+N+ +  LC+ G++ EA RL++ M    V P+  T++TL+ G C  
Sbjct: 210 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 268

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
                A      M + GC    F+Y
Sbjct: 269 SMPQEAMHYLRRMMNQGCLPDDFTY 293



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN L G  +   +      +F  + S G   D YTY +LI+  CK   V   ++ L  +
Sbjct: 572 TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEM 631

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           ++  F P    F  +I  L    R+ +A  +   +   G  P V+   T++N 
Sbjct: 632 IKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA 682


>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
 gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
          Length = 814

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ + I + ML    +P    SFN+L    A+T+  D  ++ F+ +      PDL+T+ I
Sbjct: 136 SQCYAIHEEMLKAGIAPNTF-SFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLI 194

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++C CK G     F V   ++   F P D    T++++ L    R+ EA  +F +++  
Sbjct: 195 LVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKC 254

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+ I Y+T+I+GL + GH   AL + + M          C P  VTY  +++ LCK 
Sbjct: 255 GFPPDAIAYNTMIDGLAKAGHAQEALKVLDNM------LAKACVPTEVTYGILVNSLCKA 308

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++A+ELF  M      P+ V Y SLIHGF  +    EA  L  EM++ G +PDV+T 
Sbjct: 309 GTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITH 368

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            V++D LCK+G  ++A++  E M+  G  PN  T++T++ G    GRV +A  +   M +
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 387 MGC 389
            GC
Sbjct: 429 HGC 431



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 101/323 (31%), Positives = 152/323 (47%), Gaps = 44/323 (13%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   LAK  H    L +   + +    P   TY IL+N  CK G +     
Sbjct: 257 PPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEE 316

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S F P++V +TSLI G     R+ EA +LF ++   G +P+VIT++ +I+GLC
Sbjct: 317 LFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITHTVMIDGLC 376

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++G+   A   FEEM  G       CKPN VTYTTII GL K G V  A  +   M    
Sbjct: 377 KSGNFEQAAKSFEEMMRGG------CKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHG 430

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD------------ 331
             PD VTY  L+ GFC     +EA  LL E+      P++  ++ +++            
Sbjct: 431 CFPDSVTYICLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTL 490

Query: 332 ------------------------ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                                    LCK G++DEA R+ + M+  G  P+ +T++ L++G
Sbjct: 491 DDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILING 550

Query: 368 FCLT--GRVNHAKELFVSMESMG 388
            C +   RV  A  L   +E +G
Sbjct: 551 LCRSRENRVERAFALLHDLEKVG 573



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 140/288 (48%), Gaps = 6/288 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF +F  M+ M   PP       +   L K K       +F ++   G  PD   YN 
Sbjct: 206 EKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNT 265

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   K G       VL  +L     P  V +  L+  LC    +  A  LF  + A G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN + Y++LI+G  ++G    A +LF+EM           +P+ +T+T +IDGLCK G
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG------YRPDVITHTVMIDGLCKSG 379

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A + F +M      P+VVTY ++I G         A  ++  M+  G  PD VT+ 
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            ++D  CK G++DEA++LL+ +     +PN   +S+L++G C  G V 
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVE 487



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 137/275 (49%), Gaps = 9/275 (3%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM--GRVSHGFVVLGRILRSCFT 174
           L KT   D    +F+R+ S G  PD  TYNILIN  C+    RV   F +L  + +  + 
Sbjct: 516 LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYL 575

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PDAV +T L  GLC    +  A  +  +  + G   +V+ Y+ L  GLC  G    A++L
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
           F+EM    G       P+   Y  II+GL K   ++ A + F +M  K   P V TY +L
Sbjct: 636 FQEMVRQGGA------PDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTAL 689

Query: 295 IHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +   C+A + +EA      M+ +G +   V+ ++ ++   CK  K+D A +L E MI RG
Sbjct: 690 VQALCHAGNVDEAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRG 749

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             P   T ++L DG   +G+   A+EL   M + G
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGG 784



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/322 (29%), Positives = 153/322 (47%), Gaps = 44/322 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L+K         + K + + G FPD  TY  L++ FCK+GR+     +
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQL 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC-------------------AES-------------- 191
           L  + +   +P+   ++SL+ GLC                   AE+              
Sbjct: 458 LDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLC 517

Query: 192 ---RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV--ALNLFEEMANGNGKFG 246
              R+ EA  +F ++ + GCKP+  TY+ LINGLCR+    V  A  L  ++     K G
Sbjct: 518 KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE----KVG 573

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
            +  P+ VTYT +  GLCK G VD+A ++  +   +  N DVV Y +L  G CY    + 
Sbjct: 574 YL--PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDR 631

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM+ QG  PD   +  I++ L K  K+++A +  + MI +G  P  +T++ L+ 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 367 GFCLTGRVNHAKELFVSMESMG 388
             C  G V+ A   F SM + G
Sbjct: 692 ALCHAGNVDEAFHRFESMLARG 713



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 160/342 (46%), Gaps = 35/342 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +FD M+     P  +T   ++ G L K+ +++     F+ +   G  P++ TY  
Sbjct: 347 KEACSLFDEMVEAGYRPDVITHTVMIDG-LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 148 LINCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +I    K+GRV++ F ++ G I   CF PD+V +  L+ G C   R+ EAA L  +L   
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKC 464

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALN-LFEE---------------MANGNGKFGVV-- 248
              PN+  YS+L+NGLC  G     L+ LFE+               +  G  K G +  
Sbjct: 465 SSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGRLDE 524

Query: 249 ------------CKPNTVTYTTIIDGLCK--EGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                       CKP+  TY  +I+GLC+  E  V++A  L   ++     PD VTY  L
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTYTPL 584

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
             G C   + + A  +L E   +G   DVV +  +   LC  G++D A  L + M+ +G 
Sbjct: 585 CIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGG 644

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+ + +  +++G     ++  A + F  M   G K TV +Y
Sbjct: 645 APDAAAYCCIINGLIKVKKLEDACKFFDEMIGKGQKPTVATY 686



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 114/262 (43%), Gaps = 9/262 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             AF +   +  +   P  +T   L  G L K    D  + + +  +S G   D+  Y  
Sbjct: 560 ERAFALLHDLEKVGYLPDAVTYTPLCIG-LCKIGEVDRAVKMLEEASSRGWNADVVAYTA 618

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L    C  G+V     +   ++R    PDA A+  +I GL    ++ +A   F ++   G
Sbjct: 619 LCTGLCYQGQVDRAVSLFQEMVRQGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMIGKG 678

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP V TY+ L+  LC  G+   A + FE M       G V     + Y  +I G CK  
Sbjct: 679 QKPTVATYTALVQALCHAGNVDEAFHRFESMLARGELVGSV-----MIYDALIHGFCKAL 733

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A +LF  M  +   P  VT  SL  G   +    +A  LL EM   G  P   TF 
Sbjct: 734 KVDAALKLFEDMISRGNVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFT 793

Query: 328 VIMDELCKNGKMDEASRLLELM 349
            I+D L K+   DE+ +LL+L+
Sbjct: 794 AILDGLRKS---DESGKLLKLV 812



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV TYN L++      ++++   +  EM+  G+ P+  +FN+++    +  + D+A    
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           E+M  +   P+  TF  L+D  C  G    A E+F  M +MG
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMG 219


>gi|357139998|ref|XP_003571561.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 807

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 115/328 (35%), Positives = 173/328 (52%), Gaps = 25/328 (7%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT----------VLSLFKRLN 134
           +TP++A  +FD +L      P     ++L G L+                  ++LF R+ 
Sbjct: 36  LTPDDAHHLFDGLLRQTAQVPE----SVLNGFLSALARAPASAALRDGPALAVALFNRM- 90

Query: 135 STG-----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           STG       P +YTY+ILI+C C+  R+   F   G +LR     D +  +SL++GLC 
Sbjct: 91  STGTGPRVALPTVYTYSILIDCCCRARRLDLAFAFFGCLLRQGMKADVIVVSSLLRGLCD 150

Query: 190 ESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             R  EA   LF ++   GC P+ I+YST++  +C  G +  AL++        G     
Sbjct: 151 AKRTDEAVDVLFHRMPELGCVPDAISYSTVLKSVCDDGRSQWALDILRMAVKQGGG---- 206

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C  N V Y+T++ GL KEG V +A +LF +M  + + P+VVTYNS+IH  C A   ++A 
Sbjct: 207 CPCNVVVYSTVVHGLFKEGKVGEACDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQ 266

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +L +M+  GVQPD VT+N ++      G+  +A R+ + M  RGV PNT T ST +   
Sbjct: 267 GILRQMVGNGVQPDNVTYNTLIHGYSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFL 326

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  GR+  A+E F SM + G K  + SY
Sbjct: 327 CKHGRIEEAREFFDSMLAKGHKLNIISY 354



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 163/334 (48%), Gaps = 29/334 (8%)

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           C   + +  +  PP + ++N +   L K +  D    + +++   G+ PD  TYN LI+ 
Sbjct: 231 CDLFHEMTQQGVPPNVVTYNSVIHALCKARAVDKAQGILRQMVGNGVQPDNVTYNTLIHG 290

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +  +G+      +   +      P+ V  ++ +  LC   RI EA   F  + A G K N
Sbjct: 291 YSTLGQWKQAVRMFKEMTSRGVIPNTVTCSTFVAFLCKHGRIEEAREFFDSMLAKGHKLN 350

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVV-------- 248
           +I+YSTL++G    G  +   NLF  M                NG  K G+V        
Sbjct: 351 IISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNILVNGYAKCGMVREAMFIFE 410

Query: 249 ------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                   P+ +TY  +I   C+ G +D A + F  M DK + P+   Y  LI GFC   
Sbjct: 411 DMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKGVEPNFAVYQCLIQGFCTHG 470

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D  +A  L+ E+ ++G+ P +++F  +++ LCK G++ EA R+ +++I  G   + + F+
Sbjct: 471 DLVKAEELVYEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFT 530

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+DG+CL G+++ A  +  +M S+G +  + +Y
Sbjct: 531 SLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTY 564



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 147/309 (47%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   FD ML  +     + S++ L    A       + +LF  +   G+ P+ + +NI
Sbjct: 333 EEAREFFDSML-AKGHKLNIISYSTLLHGYATAGCLVDMSNLFNLMVRDGIVPNQHVFNI 391

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N + K G V     +   + +    PD + + ++I   C    + +A   F  +   G
Sbjct: 392 LVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDKFNHMIDKG 451

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN   Y  LI G C  G  + A  L  E+ N          P  +++ ++I+ LCKEG
Sbjct: 452 VEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKG------LGPCILSFASLINHLCKEG 505

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A+ +F  +       DV  + SLI G+C     +EA  +   M+  G++PD+VT+ 
Sbjct: 506 RVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGIEPDIVTYG 565

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CKNG++D+   L   ++ +GV P T T+  ++DG    GR   AKE+F  M   
Sbjct: 566 TLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKEMFQEMIES 625

Query: 388 GCKHTVFSY 396
           G   T+ +Y
Sbjct: 626 GIAVTIPTY 634



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 139/289 (48%), Gaps = 6/289 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN+L    AK       + +F+ +   GL PD+ TY  +I+ FC+MG +      
Sbjct: 384 PNQHVFNILVNGYAKCGMVREAMFIFEDMQKRGLNPDVLTYLAVIHAFCRMGSMDDAMDK 443

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P+   +  LI+G C    +++A  L  +++  G  P ++++++LIN LC+
Sbjct: 444 FNHMIDKGVEPNFAVYQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCILSFASLINHLCK 503

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F+ M    G+     K +   +T++IDG C  G + +A  +   M    I
Sbjct: 504 EGRVFEAQRIFD-MIIRTGE-----KADVNIFTSLIDGYCLIGKMSEAFRVHDAMVSVGI 557

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY +L++G C     ++   L  E++ +GV+P   T+ +I+D L   G+   A  
Sbjct: 558 EPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTAAAKE 617

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           + + MI  G+     T+S L+ G C       A  +F  + +M  K  +
Sbjct: 618 MFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDI 666



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 150/309 (48%), Gaps = 15/309 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKT--KHYDTVLS--LFKRLNSTGLFPDLY 143
           ++A   F++M++    P    +F + + CL +    H D V +  L   + + GL P + 
Sbjct: 438 DDAMDKFNHMIDKGVEP----NFAV-YQCLIQGFCTHGDLVKAEELVYEIRNKGLGPCIL 492

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           ++  LIN  CK GRV     +   I+R+    D   FTSLI G C   ++ EA  +   +
Sbjct: 493 SFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLIGKMSEAFRVHDAM 552

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            + G +P+++TY TL+NG C+ G     L LF E+ +         KP T TY  I+DGL
Sbjct: 553 VSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKG------VKPTTFTYGIILDGL 606

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
              G    AKE+F +M +  I   + TY+ L+ G C  N   EA  +  ++    V+ D+
Sbjct: 607 FHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDI 666

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V  N+++ ++ K  + +EA  L   +   G+ P   T++ +M+     G V  A+ +F  
Sbjct: 667 VILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSV 726

Query: 384 MESMGCKHT 392
           M   G   T
Sbjct: 727 MLKSGLSPT 735



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 130/282 (46%), Gaps = 6/282 (2%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y +  +   P + SF  L   L K         +F  +  TG   D+  +  LI+ +C +
Sbjct: 480 YEIRNKGLGPCILSFASLINHLCKEGRVFEAQRIFDMIIRTGEKADVNIFTSLIDGYCLI 539

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G++S  F V   ++     PD V + +L+ G C   RI +   LF +L   G KP   TY
Sbjct: 540 GKMSEAFRVHDAMVSVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTY 599

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
             +++GL   G T  A  +F+EM       G+       TY+ ++ GLC+    ++A  +
Sbjct: 600 GIILDGLFHAGRTAAAKEMFQEMIES----GIAV--TIPTYSILLTGLCRNNCTEEAITV 653

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F ++   N+  D+V  N +I     A    EA  L   + D G+ P V T+ ++M+ L K
Sbjct: 654 FQKLCAMNVKFDIVILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIK 713

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            G ++EA  +  +M+  G++P +   + ++      G +  A
Sbjct: 714 EGSVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKA 755



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 107/239 (44%), Gaps = 6/239 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G+ PD+ TY  L+N  CK GR+  G ++   +L     P    +  ++ GL    R  
Sbjct: 554 SVGIEPDIVTYGTLVNGCCKNGRIDDGLILFRELLHKGVKPTTFTYGIILDGLFHAGRTA 613

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
            A  +F ++   G    + TYS L+ GLCR   T  A+ +F+++   N KF +V      
Sbjct: 614 AAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMNVKFDIV------ 667

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
               +I  + K    ++A+ LF  + D  + P V TY  ++          EA  +   M
Sbjct: 668 ILNIMISKMFKARRREEAEGLFASIPDYGLVPTVQTYTIMMENLIKEGSVEEAEGVFSVM 727

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           +  G+ P     NVI+  L + G++ +A   +  +  + +    ST S L+  F   G+
Sbjct: 728 LKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTASMLLSLFSCKGK 786



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 7/259 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF + D M+++   P  +T   L+ GC  K    D  L LF+ L   G+ P  +TY I
Sbjct: 543 SEAFRVHDAMVSVGIEPDIVTYGTLVNGC-CKNGRIDDGLILFRELLHKGVKPTTFTYGI 601

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++     GR +    +   ++ S        ++ L+ GLC  +   EA  +F KL A  
Sbjct: 602 ILDGLFHAGRTAAAKEMFQEMIESGIAVTIPTYSILLTGLCRNNCTEEAITVFQKLCAMN 661

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K +++  + +I+ + +      A  LF  + +    +G+V  P   TYT +++ L KEG
Sbjct: 662 VKFDIVILNIMISKMFKARRREEAEGLFASIPD----YGLV--PTVQTYTIMMENLIKEG 715

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A+ +F  M    ++P     N ++       +  +A   +  +  + +  +  T +
Sbjct: 716 SVEEAEGVFSVMLKSGLSPTSHFINVIVRTLLEKGEIVKAGIYMCRVDGKSILFEASTAS 775

Query: 328 VIMDELCKNGKMDEASRLL 346
           +++      GK  E   LL
Sbjct: 776 MLLSLFSCKGKHREHLNLL 794


>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
 gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
          Length = 814

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 101/303 (33%), Positives = 163/303 (53%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ + I + ML    +P    SFN+L    A+T+  D  ++ F+ +      PDL+T+ I
Sbjct: 136 SQCYAIHEEMLKAGIAPNTF-SFNILIRSFARTRRADDAVTCFEIMKRKRCKPDLHTFLI 194

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++C CK G     F V   ++   F P D    T++++ L    R+ EA  +F +++  
Sbjct: 195 LVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKC 254

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+ I Y+T+I+GL + GH   AL + + M          C P  VTY  +++ LCK 
Sbjct: 255 GFPPDAIAYNTMIDGLAKAGHAQEALKVLDNM------LAKACVPTEVTYGILVNSLCKA 308

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++A+ELF  M      P+ V Y SLIHGF  +    EA  L  EM++ G +PDV+T 
Sbjct: 309 GTLERAEELFRVMAASGFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYRPDVITH 368

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            V++D LCK+G  ++A++  E M+  G  PN  T++T++ G    GRV +A  +   M +
Sbjct: 369 TVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIA 428

Query: 387 MGC 389
            GC
Sbjct: 429 HGC 431



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 143/295 (48%), Gaps = 7/295 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF +F  M+ M   PP       +   L K K       +F ++   G  PD   YN 
Sbjct: 206 EKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNT 265

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   K G       VL  +L     P  V +  L+  LC    +  A  LF  + A G
Sbjct: 266 MIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVNSLCKAGTLERAEELFRVMAASG 325

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN + Y++LI+G  ++G    A +LF+EM           +P+ +T+T +IDGLCK G
Sbjct: 326 FRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAG------YRPDVITHTVMIDGLCKSG 379

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A + F +M      P+VVTY ++I G         A  ++  M+  G  PD VT+ 
Sbjct: 380 NFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYI 439

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV-NHAKELF 381
            ++D  CK G++DEA++LL+ +     +PN   +S+L+ G C  G V N   +LF
Sbjct: 440 CLLDGFCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLF 494



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 151/322 (46%), Gaps = 44/322 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L+K         + K + + G FPD  TY  L++ FCK+GR+     +
Sbjct: 398 PNVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDGFCKLGRLDEAAQL 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC-------------------AES-------------- 191
           L  + +   +P+   ++SL+KGLC                   AE+              
Sbjct: 458 LDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLC 517

Query: 192 ---RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV--ALNLFEEMANGNGKFG 246
              R+ EA  +F ++ + GCKP+  TY+ LINGLCR+    V  A  L  ++        
Sbjct: 518 KTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEM------ 571

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           V   P+ VTYT +  GLCK G VD+A ++  +   +  N DVV Y +L  G CY    + 
Sbjct: 572 VGYLPDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDR 631

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM+ QG  PD   +  I++ L K  K+++A +  + MI +G  P  +T++ L+ 
Sbjct: 632 AVSLFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQ 691

Query: 367 GFCLTGRVNHAKELFVSMESMG 388
             C  G V+ A   F  M + G
Sbjct: 692 ALCHAGNVDEAFHRFEGMLARG 713



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 91/275 (33%), Positives = 136/275 (49%), Gaps = 9/275 (3%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM--GRVSHGFVVLGRILRSCFT 174
           L KT   D    +F+R+ S G  PD  TYNILIN  C+    RV   F +L  +    + 
Sbjct: 516 LCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYL 575

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PDAV +T L  GLC    +  A  +  +  + G   +V+ Y+ L  GLC  G    A++L
Sbjct: 576 PDAVTYTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSL 635

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
           F+EM    G       P+   Y  II+GL K   ++ A + F +M  K   P V TY +L
Sbjct: 636 FQEMVRQGGA------PDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTAL 689

Query: 295 IHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +   C+A + +EA      M+ +G +   V+ ++ ++   CK  K+D A +L E MI RG
Sbjct: 690 VQALCHAGNVDEAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRG 749

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             P   T ++L DG   +G+   A+EL   M + G
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGG 784



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 159/342 (46%), Gaps = 35/342 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +FD M+     P  +T   ++ G L K+ +++     F+ +   G  P++ TY  
Sbjct: 347 KEACSLFDEMVEAGYRPDVITHTVMIDG-LCKSGNFEQAAKSFEEMMRGGCKPNVVTYTT 405

Query: 148 LINCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +I    K+GRV++ F ++ G I   CF PD+V +  L+ G C   R+ EAA L  +L   
Sbjct: 406 IIQGLSKIGRVANAFRIMKGMIAHGCF-PDSVTYICLLDGFCKLGRLDEAAQLLDELDKC 464

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALN-LFEE---------------MANGNGKFGVV-- 248
              PN+  YS+L+ GLC  G     L+ LFE+               +  G  K G +  
Sbjct: 465 SSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGRLDE 524

Query: 249 ------------CKPNTVTYTTIIDGLCK--EGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                       CKP+  TY  +I+GLC+  E  V++A  L   ++     PD VTY  L
Sbjct: 525 ACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTYTPL 584

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
             G C   + + A  +L E   +G   DVV +  +   LC  G++D A  L + M+ +G 
Sbjct: 585 CIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVRQGG 644

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+ + +  +++G     ++  A + F  M   G K TV +Y
Sbjct: 645 APDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATY 686



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/246 (30%), Positives = 109/246 (44%), Gaps = 9/246 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +T   L  G L K    D  + + +  +S G   D+  Y  L    C  G+V     
Sbjct: 576 PDAVTYTPLCIG-LCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVS 634

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++R    PDA A+  +I GL    ++ +A   F ++   G KP V TY+ L+  LC
Sbjct: 635 LFQEMVRQGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMIGKGQKPTVATYTALVQALC 694

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G+   A + FE M       G V     + Y  +I G CK   VD A +LF  M  + 
Sbjct: 695 HAGNVDEAFHRFEGMLARGELVGSV-----MIYDALIHGFCKALKVDAALKLFEDMISRG 749

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P  VT  SL  G   +    +A  LL EM   G  P   TF  I+D L K+   DE+ 
Sbjct: 750 NVPTAVTSASLFDGLVRSGKTEKAQELLQEMAAGGSPPHAATFTAILDGLRKS---DESG 806

Query: 344 RLLELM 349
           +LL+L+
Sbjct: 807 KLLKLV 812



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 52/102 (50%)

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV TYN L++      ++++   +  EM+  G+ P+  +FN+++    +  + D+A    
Sbjct: 118 DVFTYNCLMNLLVAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCF 177

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           E+M  +   P+  TF  L+D  C  G    A E+F  M +MG
Sbjct: 178 EIMKRKRCKPDLHTFLILVDCLCKAGMDEKAFEVFHEMMAMG 219


>gi|5454208|gb|AAD43623.1|AC005698_22 T3P18.22 [Arabidopsis thaliana]
          Length = 425

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + + M   +  P  L  +N +   L K KH D  L+LFK + + G+ P++ TY+ LI
Sbjct: 35  AFNLLNKMEQGKLEPGVLI-YNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLI 93

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +C C  GR S    +L  ++     PD   F++LI     E +++EA  L+ ++      
Sbjct: 94  SCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSID 153

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TYS+LING C       A  +FE M + +      C P+ VTY T+I G CK   V
Sbjct: 154 PSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKH------CFPDVVTYNTLIKGFCKYKRV 207

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++  E+F +M  + +  + VTYN LI G   A D + A  +  EM+  GV P+++T+N +
Sbjct: 208 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 267

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCKNGK+++A  + E +    + P   T++ +++G C  G+V    +LF ++   G 
Sbjct: 268 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 327

Query: 390 KHTVFSY 396
           K  V +Y
Sbjct: 328 KPDVVAY 334



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 80/199 (40%), Positives = 126/199 (63%), Gaps = 6/199 (3%)

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
           AL  ++ A GC+P+++TY  ++NGLC+ G T +A NL  +M  G        +P  + Y 
Sbjct: 2   ALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGK------LEPGVLIYN 55

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           TIIDGLCK   +D A  LF +M+ K I P+VVTY+SLI   C    W++A+ LL +M+++
Sbjct: 56  TIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIER 115

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            + PDV TF+ ++D   K GK+ EA +L + M+ R ++P+  T+S+L++GFC+  R++ A
Sbjct: 116 KINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEA 175

Query: 378 KELFVSMESMGCKHTVFSY 396
           K++F  M S  C   V +Y
Sbjct: 176 KQMFEFMVSKHCFPDVVTY 194



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 148/270 (54%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           ++L  R+ + G  PDL TY +++N  CK G     F +L ++ +    P  + + ++I G
Sbjct: 1   MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 60

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC    + +A  LF +++  G +PNV+TYS+LI+ LC  G    A  L  +M        
Sbjct: 61  LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERK---- 116

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+  T++ +ID   KEG + +A++L+ +M  ++I+P +VTY+SLI+GFC  +  +E
Sbjct: 117 --INPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +   M+ +   PDVVT+N ++   CK  +++E   +   M  RG+  NT T++ L+ 
Sbjct: 175 AKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQ 234

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G    G  + A+E+F  M S G    + +Y
Sbjct: 235 GLFQAGDCDMAQEIFKEMVSDGVPPNIMTY 264



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++ ++   L K    D   +L  ++    L P +  YN +I+  CK   +     +
Sbjct: 14  PDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNL 73

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      P+ V ++SLI  LC   R  +A+ L + +      P+V T+S LI+   +
Sbjct: 74  FKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVK 133

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  L++EM   +        P+ VTY+++I+G C    +D+AK++F  M  K+ 
Sbjct: 134 EGKLVEAEKLYDEMVKRS------IDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHC 187

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYN+LI GFC      E   +  EM  +G+  + VT+N+++  L + G  D A  
Sbjct: 188 FPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQE 247

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M+  GV PN  T++TL+DG C  G++  A  +F  ++    + T+++Y
Sbjct: 248 IFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTY 299



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F+ L     K         L+  +    + P + TY+ LIN FC   R+  
Sbjct: 115 RKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDE 174

Query: 161 GFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
              +   ++ + CF PD V + +LIKG C   R+ E   +F ++   G   N +TY+ LI
Sbjct: 175 AKQMFEFMVSKHCF-PDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILI 233

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            GL + G   +A  +F+EM +     GV   PN +TY T++DGLCK G ++KA  +F  +
Sbjct: 234 QGLFQAGDCDMAQEIFKEMVSD----GV--PPNIMTYNTLLDGLCKNGKLEKAMVVFEYL 287

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           +   + P + TYN +I G C A    +   L   +  +GV+PDVV +N ++   C+ G  
Sbjct: 288 QRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSK 347

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +EA  L + M   G  PN+  ++TL+      G    + EL   M S G
Sbjct: 348 EEADALFKEMKEDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCG 396



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/289 (29%), Positives = 142/289 (49%), Gaps = 8/289 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+  R   P + +++ L          D    +F+ + S   FPD+ TYN L
Sbjct: 139 EAEKLYDEMVK-RSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTL 197

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK  RV  G  V   + +     + V +  LI+GL        A  +F ++ + G 
Sbjct: 198 IKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGV 257

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY+TL++GLC+ G    A+ +FE +           +P   TY  +I+G+CK G 
Sbjct: 258 PPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSK------MEPTIYTYNIMIEGMCKAGK 311

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+   +LF  +  K + PDVV YN++I GFC      EA+ L  EM + G  P+   +N 
Sbjct: 312 VEDGWDLFCNLSLKGVKPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNT 371

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++    ++G  + ++ L++ M   G   + ST   L+      GR++ +
Sbjct: 372 LIRARLRDGDREASAELIKEMRSCGFAGDASTIG-LVTNMLHDGRLDKS 419


>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
          Length = 878

 Score =  190 bits (483), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 175/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML+ R   P + +++ +   L K +  D  + +   +   G+ PD  TYN 
Sbjct: 218 DKAYSTYHEMLD-RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 276

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C  G+       L ++      P+ V ++SL+  LC   R  EA  +F  +   G
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGV-VC------------ 249
            +P++ TY TL+ G    G     H ++ L +   +   +  F + +C            
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAM 396

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN V Y T+ID LCK G VD A   F QM D+ + P+++ Y SLIHG 
Sbjct: 397 LVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGL 456

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W++A  L++EM+D+G+  + + FN I+D  CK G++ E+ +L +LM+  GV P+ 
Sbjct: 457 CTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDI 516

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++TL+DG CL G+++ A +L  SM S+G K  + +Y
Sbjct: 517 ITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 554



 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 168/312 (53%), Gaps = 9/312 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P ++TY
Sbjct: 38  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTY 95

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++ 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC P+V +Y+ L+ GLC    +  AL L   MA+  G       P+ V+Y T+++G  
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYNTVLNGFF 212

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG  DKA   + +M D+ I PDVVTY+S+I   C A   ++A  +L  M+  GV PD +
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV PN  T+S+LM+  C  GR   A+++F SM
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 385 ESMGCKHTVFSY 396
              G +  + +Y
Sbjct: 333 TKRGLEPDIATY 344



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M   R   P + ++  L    A       + +L   +   G+ PD + +NIL
Sbjct: 324 EARKIFDSMTK-RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K  +V    +V  ++ +    P+ V + ++I  LC    + +A   F ++   G 
Sbjct: 383 ICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGL 442

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+I Y++LI+GLC       A  L  EM +       +C  NT+ + +IID  CKEG 
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG-----ICL-NTIFFNSIIDSHCKEGR 496

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TYN+LI G C A   +EA  LL  M+  GV+PD+VT+  
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 556

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C+  +MD+A  L + M+  GV+PN  T++ ++ G   T R   AKEL+VS+   G
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 617 TQLELSTY 624



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 162/353 (45%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+      P    FN+L    AK +  D  + +F ++   GL
Sbjct: 349 QGYATKGALVEMHALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--------- 189
            P++  Y  +I+  CK G V    +   +++    TP+ + +TSLI GLC          
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 190 --------------------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R++E+  LF  +   G KP++ITY+TLI+G C
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L   M +      V  KP+ VTY T+I+G C+   +D A  LF +M    
Sbjct: 528 LAGKMDEATKLLASMVS------VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 581

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+++TYN ++ G  +      A  L + +   G Q ++ T+N+I+  LCKN   DEA 
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+ + + L  +   T TF+ ++      GR++ AK+LF +  + G    V +Y
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTY 694



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 146/302 (48%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M++   +P  +   +L+ G L     +D    L   +   G+  +   +N 
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHG-LCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GRV     +   ++R    PD + + +LI G C   ++ EA  L   + + G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+++TY TLING CR      AL LF+EM +          PN +TY  I+ GL    
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG------VSPNIITYNIILQGLFHTR 600

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AKEL++ +       ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN
Sbjct: 601 RTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 660

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K G+MDEA  L       G+ P+  T+S + +     G +    +LF+SME  
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEEN 720

Query: 388 GC 389
           GC
Sbjct: 721 GC 722



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 118/249 (47%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   G+ PD+ TYN LI+  C  G++     +L  ++     PD V + +LI G C
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A ALF ++ + G  PN+ITY+ ++ GL  T  T  A  L+  +     +  + 
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELS 622

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I         +EA 
Sbjct: 623 ------TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L       G+ PDV T++++ + L + G ++E   L   M   G + ++   ++++   
Sbjct: 677 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 737 LQRGDITRA 745



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E+  +FD M+ +   P  +T   L+ GC    K  D    L   + S G+ PD+ TY  L
Sbjct: 499 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +C++ R+     +   ++ S  +P+ + +  +++GL    R   A  L+  +   G 
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 617

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G 
Sbjct: 618 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKCGR 671

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+AK+LF       + PDV TY+ +           E + L + M + G   D    N 
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNS 731

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           I+ +L + G +  A   L ++  +  +   ST S L++
Sbjct: 732 IVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769


>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
 gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
          Length = 782

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 175/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML+ R   P + +++ +   L K +  D  + +   +   G+ PD  TYN 
Sbjct: 218 DKAYSTYHEMLD-RGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNS 276

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C  G+       L ++      P+ V ++SL+  LC   R  EA  +F  +   G
Sbjct: 277 ILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSMTKRG 336

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGV-VC------------ 249
            +P++ TY TL+ G    G     H ++ L +   +   +  F + +C            
Sbjct: 337 LEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAM 396

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN V Y T+ID LCK G VD A   F QM D+ + P+++ Y SLIHG 
Sbjct: 397 LVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGL 456

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W++A  L++EM+D+G+  + + FN I+D  CK G++ E+ +L +LM+  GV P+ 
Sbjct: 457 CTCDKWDKAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDI 516

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++TL+DG CL G+++ A +L  SM S+G K  + +Y
Sbjct: 517 ITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTY 554



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 168/312 (53%), Gaps = 9/312 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P ++TY
Sbjct: 38  DARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHTY 95

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI C C+ GR+  GF  LG +++  F  DA+ FT L+KGLCA+ R  +A  +   ++ 
Sbjct: 96  AILIGCCCRAGRLDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKRTSDAMDIVLRRMT 155

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC P+V +Y+ L+ GLC    +  AL L   MA+  G       P+ V+Y T+++G  
Sbjct: 156 ELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYNTVLNGFF 212

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG  DKA   + +M D+ I PDVVTY+S+I   C A   ++A  +L  M+  GV PD +
Sbjct: 213 KEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCM 272

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV PN  T+S+LM+  C  GR   A+++F SM
Sbjct: 273 TYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKIFDSM 332

Query: 385 ESMGCKHTVFSY 396
              G +  + +Y
Sbjct: 333 TKRGLEPDIATY 344



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M   R   P + ++  L    A       + +L   +   G+ PD + +NIL
Sbjct: 324 EARKIFDSMTK-RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNIL 382

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K  +V    +V  ++ +    P+ V + ++I  LC    + +A   F ++   G 
Sbjct: 383 ICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGL 442

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+I Y++LI+GLC       A  L  EM +       +C  NT+ + +IID  CKEG 
Sbjct: 443 TPNIIVYTSLIHGLCTCDKWDKAEELILEMLDRG-----IC-LNTIFFNSIIDSHCKEGR 496

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TYN+LI G C A   +EA  LL  M+  GV+PD+VT+  
Sbjct: 497 VIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGT 556

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C+  +MD+A  L + M+  GV+PN  T++ ++ G   T R   AKEL+VS+   G
Sbjct: 557 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSG 616

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 617 TQLELSTY 624



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/353 (28%), Positives = 162/353 (45%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+      P    FN+L    AK +  D  + +F ++   GL
Sbjct: 349 QGYATKGALVEMHALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 407

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA--------- 189
            P++  Y  +I+  CK G V    +   +++    TP+ + +TSLI GLC          
Sbjct: 408 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKAEE 467

Query: 190 --------------------------ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R++E+  LF  +   G KP++ITY+TLI+G C
Sbjct: 468 LILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCC 527

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L   M +      V  KP+ VTY T+I+G C+   +D A  LF +M    
Sbjct: 528 LAGKMDEATKLLASMVS------VGVKPDIVTYGTLINGYCRVSRMDDALALFKEMVSSG 581

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+++TYN ++ G  +      A  L + +   G Q ++ T+N+I+  LCKN   DEA 
Sbjct: 582 VSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEAL 641

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+ + + L  +   T TF+ ++      GR++ AK+LF +  + G    V +Y
Sbjct: 642 RMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTY 694



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 148/302 (49%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M++   +P  +   +L+ G L     +D    L   +   G+  +   +N 
Sbjct: 428 DDAMLYFEQMIDEGLTPNIIVYTSLIHG-LCTCDKWDKAEELILEMLDRGICLNTIFFNS 486

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK GRV     +   ++R    PD + + +LI G C   ++ EA  L   + + G
Sbjct: 487 IIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVG 546

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+++TY TLING CR      AL LF+EM +     GV   PN +TY  I+ GL    
Sbjct: 547 VKPDIVTYGTLINGYCRVSRMDDALALFKEMVSS----GV--SPNIITYNIILQGLFHTR 600

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AKEL++ +       ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN
Sbjct: 601 RTAAAKELYVSITKSGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFN 660

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L K G+MDEA  L       G+ P+  T+S + +     G +    +LF+SME  
Sbjct: 661 IMIGALLKCGRMDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEEN 720

Query: 388 GC 389
           GC
Sbjct: 721 GC 722



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 118/249 (47%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   G+ PD+ TYN LI+  C  G++     +L  ++     PD V + +LI G C
Sbjct: 503 LFDLMVRIGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 562

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A ALF ++ + G  PN+ITY+ ++ GL  T  T  A  L+  +     +  + 
Sbjct: 563 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELS 622

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I         +EA 
Sbjct: 623 ------TYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKCGRMDEAK 676

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L       G+ PDV T++++ + L + G ++E   L   M   G + ++   ++++   
Sbjct: 677 DLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNSIVRKL 736

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 737 LQRGDITRA 745



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E+  +FD M+ +   P  +T   L+ GC    K  D    L   + S G+ PD+ TY  L
Sbjct: 499 ESEKLFDLMVRIGVKPDIITYNTLIDGCCLAGK-MDEATKLLASMVSVGVKPDIVTYGTL 557

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +C++ R+     +   ++ S  +P+ + +  +++GL    R   A  L+  +   G 
Sbjct: 558 INGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGT 617

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G 
Sbjct: 618 QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKCGR 671

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+AK+LF       + PDV TY+ +           E + L + M + G   D    N 
Sbjct: 672 MDEAKDLFAAHSANGLVPDVRTYSLMAENLIEQGSLEELDDLFLSMEENGCSADSRMLNS 731

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           I+ +L + G +  A   L ++  +  +   ST S L++
Sbjct: 732 IVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASFLLE 769


>gi|302770783|ref|XP_002968810.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
 gi|300163315|gb|EFJ29926.1| hypothetical protein SELMODRAFT_91015 [Selaginella moellendorffii]
          Length = 545

 Score =  190 bits (483), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 113/313 (36%), Positives = 169/313 (53%), Gaps = 10/313 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +   M   +  P  +T   L+ G L K    D  +++ +++   G  P L TY +
Sbjct: 59  DDAFQLLKKMDEKKCLPTTVTYTALVDGLL-KAGRLDEAMAVLEQMVEKGNSPTLKTYTV 117

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   K GRV     +   +L +   PDA  +T+LIKGLC   +  EA AL+ +  A  
Sbjct: 118 VIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKEANARK 177

Query: 208 ----CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                 P+V+TY++LI+GLC+ G  + A  +F++ A   G       P+ VTYT+IIDGL
Sbjct: 178 HHATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFI-----PDAVTYTSIIDGL 232

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G V++  E F +M+++   PD VTY +LI GF  A    +A+ +  +M+  G     
Sbjct: 233 CKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVST 292

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT+N+I+D LCK G++ EA      M  RG      T+S LMDGFC  G V+ A ELF  
Sbjct: 293 VTYNIILDGLCKAGRVAEAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRR 352

Query: 384 MESMGCKHTVFSY 396
           M   GC+  + SY
Sbjct: 353 MLDRGCEPNLVSY 365



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 157/331 (47%), Gaps = 38/331 (11%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P + +F ++   L + K  D   S+ +R    G  PD  TYN+ I+  CK  RV   
Sbjct: 2   PCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAERVDDA 61

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA----------------------- 198
           F +L ++      P  V +T+L+ GL    R+ EA A                       
Sbjct: 62  FQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAVLEQMVEKGNSPTLKTYTVVIDG 121

Query: 199 ------------LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
                       +F  +   GC+P+   Y+ LI GLC++G    A  L++E AN   K  
Sbjct: 122 LSKAGRVEEARRIFVDMLGNGCRPDAFVYTALIKGLCKSGKPEEAYALYKE-ANAR-KHH 179

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELF-LQMKDKNINPDVVTYNSLIHGFCYANDWN 305
               P+ VTYT++IDGLCK G + +A+++F  +  ++   PD VTY S+I G C      
Sbjct: 180 ATAVPDVVTYTSLIDGLCKAGRILEARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVE 239

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           E      EM ++G +PD VT+  ++D   K   + +A R+   M+  G   +T T++ ++
Sbjct: 240 EGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIIL 299

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           DG C  GRV  A   F++ME  GC  TV +Y
Sbjct: 300 DGLCKAGRVAEAYATFLAMEERGCVATVVTY 330



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 150/298 (50%), Gaps = 7/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD     R   P   ++  +   L K    +     F  + + G  PD  TY  L
Sbjct: 204 EARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAAL 263

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ F K   +     V  ++L+S      V +  ++ GLC   R+ EA A F  ++  GC
Sbjct: 264 IDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGC 323

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
              V+TYS L++G C  G+   A+ LF  M +        C+PN V+Y  II GLC+ G 
Sbjct: 324 VATVVTYSALMDGFCSEGNVSAAVELFRRMLDRG------CEPNLVSYNIIIRGLCRAGK 377

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-MMDQGVQPDVVTFN 327
           + KA   F ++  + + PDV T+N+ +HG C   D       L E M+ QG  P++ +++
Sbjct: 378 LAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSYS 437

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++MD +C+ G ++ A  +   M+ RGV P+   F+TL+   C+ GRV+ A E+F  +E
Sbjct: 438 ILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELE 495



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/352 (30%), Positives = 170/352 (48%), Gaps = 36/352 (10%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G + A   +EA  + + M+  + + P L ++ ++   L+K    +    +F  +   G  
Sbjct: 86  GLLKAGRLDEAMAVLEQMVE-KGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCR 144

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVL----GRILRSCFTPDAVAFTSLIKGLCAESRIME 195
           PD + Y  LI   CK G+    + +      R   +   PD V +TSLI GLC   RI+E
Sbjct: 145 PDAFVYTALIKGLCKSGKPEEAYALYKEANARKHHATAVPDVVTYTSLIDGLCKAGRILE 204

Query: 196 AAALFT-KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-------------- 240
           A  +F  +    G  P+ +TY+++I+GLC+ G        F EM N              
Sbjct: 205 ARQVFDDEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALI 264

Query: 241 -GNGKFGVVCKPN--------------TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            G  K  ++ K +              TVTY  I+DGLCK G V +A   FL M+++   
Sbjct: 265 DGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVAEAYATFLAMEERGCV 324

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
             VVTY++L+ GFC   + + A  L   M+D+G +P++V++N+I+  LC+ GK+ +A   
Sbjct: 325 ATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFY 384

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLT-GRVNHAKELFVSMESMGCKHTVFSY 396
            E ++ R + P+  TF+  + G C     V+   ELF SM S G    + SY
Sbjct: 385 FEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFESMVSQGTSPNLHSY 436



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 138/295 (46%), Gaps = 34/295 (11%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  M N R   P   ++  L     K K       +++++  +G      TYNI+++  C
Sbjct: 245 FHEMRN-RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 303

Query: 154 KMGRVSHGFVV-LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           K GRV+  +   L    R C     V +++L+ G C+E  +  A  LF ++   GC+PN+
Sbjct: 304 KAGRVAEAYATFLAMEERGCVAT-VVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNL 362

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVCK------------- 250
           ++Y+ +I GLCR G    A   FE++            N     +C+             
Sbjct: 363 VSYNIIIRGLCRAGKLAKAYFYFEKLLQRRLCPDVYTFNAFLHGLCQRLDTVSDGVELFE 422

Query: 251 --------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                   PN  +Y+ ++DG+C+ G ++ A E+F +M  + + PDVV +N+LI   C A 
Sbjct: 423 SMVSQGTSPNLHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVFNTLIRWLCIAG 482

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
             +EA  +  E+ ++   PD  ++  ++D L +  +M+EA  L   M L+G  P 
Sbjct: 483 RVDEALEVFREL-ERRSAPDAWSYWSLLDGLSRCERMEEARLLSFHMKLQGCAPR 536



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 2/126 (1%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T ++   +F+ M++   SP  L S+++L   + +    +  L +F+ + S G+ PD+  +
Sbjct: 413 TVSDGVELFESMVSQGTSPN-LHSYSILMDGICRAGGLEVALEIFREMVSRGVAPDVVVF 471

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N LI   C  GRV     V   + R    PDA ++ SL+ GL    R+ EA  L   +K 
Sbjct: 472 NTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDGLSRCERMEEARLLSFHMKL 530

Query: 206 FGCKPN 211
            GC P 
Sbjct: 531 QGCAPR 536


>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
 gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
          Length = 528

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 160/311 (51%), Gaps = 12/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M   R   P + ++N +     + +  D      +++ + G  PD+ TY  
Sbjct: 126 DEAVALVETMAE-RGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTA 184

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FCK   V  G  +LG + R  FTPD V ++++I GLC   R+ +A  +F ++    
Sbjct: 185 LIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS--- 241

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P  ITY++LI G CR G    A+ L  +M +        C P+ VTYTT++   CK G
Sbjct: 242 CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDK------CAPDVVTYTTLMSAFCKMG 295

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A ELF QM    ++PDVVT+ SL+ G C      +A  LL E+  +G  P + T+N
Sbjct: 296 RLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYN 355

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK  ++ +A  L+     RG  PNT T++ L+ G C  GR + A +    + S 
Sbjct: 356 CVVDGYCKANQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSE 415

Query: 388 G--CKHTVFSY 396
           G  C  +V  Y
Sbjct: 416 GGPCPTSVAMY 426



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/376 (29%), Positives = 186/376 (49%), Gaps = 24/376 (6%)

Query: 25  SSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITA 84
           +    H       ++   P D  T  KL   L    + R ++ Q L+E   +    D T 
Sbjct: 18  AGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKARRLRDAV-QVLQEMVSARHVPDNTT 76

Query: 85  ITPN-EAFCIFDYMLNMRPSPPPL---------TSFNLLFGCLAKTKHYDTVLSLFKRLN 134
           +T   ++ C+ D + + R     +          +++ L   L K +  D  ++L + + 
Sbjct: 77  LTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALVETMA 136

Query: 135 STGLFPDLYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
             G  P + TYN +I  FC+  RV  +HGF  + +++     PD + +T+LI G C    
Sbjct: 137 ERGCAPTVVTYNSIITGFCRARRVDEAHGF--MEQMVAEGCHPDIITYTALIGGFCKSRD 194

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           +     L  ++   G  P+++TYST+I+GLC+ G    A+++FEEM+         C P 
Sbjct: 195 VGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS---------CAPT 245

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            +TY ++I G C+ G +D+A  L  +M D    PDVVTY +L+  FC     ++A  L  
Sbjct: 246 AITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQ 305

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           +M+   + PDVVTF  ++D LC  G+M++A  LLE +  RG  P   T++ ++DG+C   
Sbjct: 306 QMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKAN 365

Query: 373 RVNHAKELFVSMESMG 388
           +V  A+EL     S G
Sbjct: 366 QVRKAEELVADFRSRG 381



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 139/296 (46%), Gaps = 14/296 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  IF+ M       P   ++N L G   +    D  + L  ++      PD+ TY  
Sbjct: 231 RDAVDIFEEM----SCAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTT 286

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCKMGR+   + +  +++ +  +PD V FTSL+ GLC E R+ +A  L  ++   G
Sbjct: 287 LMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG 346

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P + TY+ +++G C+      A    EE+       G V  PNTVTY  ++ G C+ G
Sbjct: 347 CPPTIYTYNCVVDGYCKANQVRKA----EELVADFRSRGFV--PNTVTYNILVAGCCRAG 400

Query: 268 FVDKAKELFLQMKDKNINP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
             D+A +   Q+  +   P    V  Y  ++   C     ++A     EM+ +G  P   
Sbjct: 401 RTDQALQYLDQLNSEG-GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAA 459

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           TF  ++  LCK  +  +A  LLE MI  G  P   T   ++  +C  G +  A EL
Sbjct: 460 TFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 515



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 130/257 (50%), Gaps = 10/257 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P    +N++I   C+ GR+ H   V  R +     PD + +T L+ GL    R+ +A  +
Sbjct: 3   PGTLLHNVVIGGLCRAGRLRHALGVY-RQMNDAHPPDFLTYTKLVHGLSKARRLRDAVQV 61

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++ +    P+  T + ++  LC       A  L EEM +           N +TY+ +
Sbjct: 62  LQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRG------MAANAITYSAL 115

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +DGLCK   +D+A  L   M ++   P VVTYNS+I GFC A   +EA+  + +M+ +G 
Sbjct: 116 VDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDEAHGFMEQMVAEGC 175

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD++T+  ++   CK+  +     LL  +  RG  P+  T+ST++DG C  GR+  A +
Sbjct: 176 HPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVD 235

Query: 380 LFVSMESMGCKHTVFSY 396
           +F   E M C  T  +Y
Sbjct: 236 IF---EEMSCAPTAITY 249



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGF 162
           P   ++N+L     +    D  L    +LNS G      +  Y I+++  C+ GR     
Sbjct: 384 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 443

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +++  + P A  F +++  LC   +  +A  L  ++  +G  P   T   +++  
Sbjct: 444 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 503

Query: 223 CRTGHTIVALNLFEEM 238
           CR G    A  L  E+
Sbjct: 504 CRAGMIQKADELASEL 519



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +NP  + +N +I G C A     A  +  +M D    PD +T+  ++  L K  ++ +A 
Sbjct: 1   MNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLSKARRLRDAV 59

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L+ M+     P+ +T + ++   CL  RV+ A+EL   M   G      +Y
Sbjct: 60  QVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITY 112


>gi|224103543|ref|XP_002313097.1| predicted protein [Populus trichocarpa]
 gi|222849505|gb|EEE87052.1| predicted protein [Populus trichocarpa]
          Length = 751

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 165/293 (56%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N + G   K K  D    L + +   GL P+L TYN++IN  C++GR+     V
Sbjct: 236 PNVVTYNTVIGAYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGV 295

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + R  F PD V + +L+ G C      +A  L +++   G  P+V+TY++LIN +C+
Sbjct: 296 LAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEMLRNGLPPDVVTYTSLINTMCK 355

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G+   A+  F++M   G        +PN VTYT++I+G  ++GF+D+A  ++ +M    
Sbjct: 356 AGNLNRAMEFFDQMHVRG-------LRPNGVTYTSLINGFSQKGFMDEAYRIWDEMIRSG 408

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P +VTYN+L++G C +    EA  LL  M  +G+ PDVV+++ I+   C+  ++D A 
Sbjct: 409 FPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFCRYQELDRAF 468

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++   M+ +GV+P+  T+S+L+ G C   R+N A +LF  M +       F+Y
Sbjct: 469 QMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKSLLPDEFTY 521



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 98/296 (33%), Positives = 158/296 (53%), Gaps = 21/296 (7%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++  L   + K  + +  +  F +++  GL P+  TY  LIN F + G +   + 
Sbjct: 340 PPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMDEAYR 399

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++RS F P  V + +L+ G C   R+ EA  L   ++  G  P+V++YST+I G C
Sbjct: 400 IWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYSTIIAGFC 459

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R      A  +  EM       GV   P+ +TY+++I GLC++  +++A +LF +M +K+
Sbjct: 460 RYQELDRAFQMNAEMVEK----GV--SPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY SLI+G+C   D NEA  L  EM+ +G  PD VT+NV+++ L K  +  EA 
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMIKKGFLPDTVTYNVLINGLNKQARTREAK 573

Query: 344 RLLELMILRGVNPNTSTFSTLMD---------------GFCLTGRVNHAKELFVSM 384
           RLL  +      PN  T+ TL++               GFC+ G +N A ++F SM
Sbjct: 574 RLLLKLFYDESIPNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVFESM 629



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L        + +  L  F+ +      P++ TYN +I  +CK+ R+   F +L  +
Sbjct: 205 SYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM 264

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+ + +  +I GLC   RI E + +  ++   G  P+ +TY+TL+NG C+ G+ 
Sbjct: 265 GLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNF 324

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL L  EM   NG       P+ VTYT++I+ +CK G +++A E F QM  + + P+ 
Sbjct: 325 HQALVLHSEMLR-NG-----LPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNG 378

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY SLI+GF      +EA  +  EM+  G  P +VT+N +++  C +G+M+EA  LL  
Sbjct: 379 VTYTSLINGFSQKGFMDEAYRIWDEMIRSGFPPTIVTYNALLNGHCVSGRMEEAIGLLRG 438

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G++P+  ++ST++ GFC    ++ A ++   M   G      +Y
Sbjct: 439 MEGKGLSPDVVSYSTIIAGFCRYQELDRAFQMNAEMVEKGVSPDAITY 486



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 158/301 (52%), Gaps = 24/301 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ I+D M+     PP + ++N L      +   +  + L + +   GL PD+ +Y+ 
Sbjct: 395 DEAYRIWDEMIR-SGFPPTIVTYNALLNGHCVSGRMEEAIGLLRGMEGKGLSPDVVSYST 453

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  FC+   +   F +   ++    +PDA+ ++SLI+GLC + R+ EA  LF ++    
Sbjct: 454 IIAGFCRYQELDRAFQMNAEMVEKGVSPDAITYSSLIQGLCEQRRLNEACDLFQEMLNKS 513

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY++LING C+ G    ALNL +EM     K G +  P+TVTY  +I+GL K+ 
Sbjct: 514 LLPDEFTYTSLINGYCKEGDLNEALNLHDEMI----KKGFL--PDTVTYNVLINGLNKQA 567

Query: 268 FVDKAKELFLQM-KDKNINPDVVTYNSLIH---------------GFCYANDWNEANCLL 311
              +AK L L++  D++I P+ +TY++LI                GFC     NEA+ + 
Sbjct: 568 RTREAKRLLLKLFYDESI-PNGITYDTLIESCSDIEFKSVVALIKGFCMKGLMNEADQVF 626

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M+ +  +P+   +NVI+   C++G + +A +L + M+  G  P+T T   L+      
Sbjct: 627 ESMIKRNQKPNEAVYNVIIHGHCRDGNVHKAHKLYKEMVDFGFIPHTVTIIALVKALYSE 686

Query: 372 G 372
           G
Sbjct: 687 G 687



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 7/261 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
           G  P + +YN +++   +  + V     V   ++ S  + +  ++  LI+G CA   +  
Sbjct: 162 GFMPGVLSYNAILDSIVRCRKPVIFAEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEM 221

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
               F +++   C PNV+TY+T+I   C+      A  L   M    G  G+  +PN +T
Sbjct: 222 GLRFFEEMERNRCLPNVVTYNTVIGAYCKLKRIDEAFKLLRSM----GLEGL--EPNLLT 275

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  +I+GLC+ G +++   +  +M  K   PD VTYN+L++G+C   ++++A  L  EM+
Sbjct: 276 YNMVINGLCRVGRIEETSGVLAEMDRKGFAPDGVTYNTLVNGYCKVGNFHQALVLHSEML 335

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G+ PDVVT+  +++ +CK G ++ A    + M +RG+ PN  T+++L++GF   G ++
Sbjct: 336 RNGLPPDVVTYTSLINTMCKAGNLNRAMEFFDQMHVRGLRPNGVTYTSLINGFSQKGFMD 395

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  ++  M   G   T+ +Y
Sbjct: 396 EAYRIWDEMIRSGFPPTIVTY 416



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 70/177 (39%), Gaps = 36/177 (20%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS-------------- 293
           +C  ++  +  ++       F++KA  +    K     P V++YN+              
Sbjct: 127 MCNSSSAVFDLVVKSCSYLNFIEKALNIVDLAKLNGFMPGVLSYNAILDSIVRCRKPVIF 186

Query: 294 ----------------------LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
                                 LI GFC A +         EM      P+VVT+N ++ 
Sbjct: 187 AEKVYREMIASGVSLNVFSYNILIRGFCAAGNLEMGLRFFEEMERNRCLPNVVTYNTVIG 246

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             CK  ++DEA +LL  M L G+ PN  T++ +++G C  GR+     +   M+  G
Sbjct: 247 AYCKLKRIDEAFKLLRSMGLEGLEPNLLTYNMVINGLCRVGRIEETSGVLAEMDRKG 303


>gi|449521772|ref|XP_004167903.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Cucumis sativus]
          Length = 645

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 103/277 (37%), Positives = 156/277 (56%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K  +    L L++ +   GL PD+ T+ ILI+  CK G +     +
Sbjct: 250 PNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNL 309

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++   TP+   + SLI   C    + EA ALF +L+ F   P+V TYS LI GLC 
Sbjct: 310 FVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCS 369

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              T  A N+FE+M     K G++   N+VTY ++IDG CKEG +DKA E+  QM +  +
Sbjct: 370 VSRTEEAGNIFEKMT----KEGIL--ANSVTYNSLIDGCCKEGKMDKALEICSQMTENGV 423

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V+T+++LI G+C   +   A  +  EM+ + + PDVVT+  ++D  CK G M EA +
Sbjct: 424 EPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALK 483

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           L   M+  G+ PN  T S L+DG C  G+++ A ELF
Sbjct: 484 LYSDMLDNGITPNCYTISCLLDGLCKDGKISDALELF 520



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 31/304 (10%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N+L   L KT  ++ +  +++ + S GL P + T+  LI+  C+ G +     +   +  
Sbjct: 151 NVLLYVLVKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRV 210

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P  + +T LI+GLC++++I EA ++   ++  G  PNV TY+TL++G C+  +   
Sbjct: 211 KGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQ 270

Query: 231 ALNLFEEMANGNG------KFGVV----CK--------------------PNTVTYTTII 260
           AL L+++M  G G       FG++    CK                    PN   Y ++I
Sbjct: 271 ALRLYQDML-GEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLI 329

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           D  CK G V +A  LFL+++   ++PDV TY+ LI G C  +   EA  +  +M  +G+ 
Sbjct: 330 DAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNIFEKMTKEGIL 389

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            + VT+N ++D  CK GKMD+A  +   M   GV PN  TFSTL+DG+C    +  A  +
Sbjct: 390 ANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCKIRNLQAAMGI 449

Query: 381 FVSM 384
           +  M
Sbjct: 450 YSEM 453



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 156/310 (50%), Gaps = 12/310 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD+       A  +FD M  ++   P +  + +L   L      +   S+ + +   G+
Sbjct: 195 QGDLL-----RAQEMFDEM-RVKGIVPTVIVYTILIRGLCSDNKIEEAESMHRAMREVGV 248

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           +P++YTYN L++ +CK+        +   +L     PD V F  LI GLC    +  A  
Sbjct: 249 YPNVYTYNTLMDGYCKLANAKQALRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARN 308

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF  +  F   PN+  Y++LI+  C+ G    A+ LF E+     +F V   P+  TY+ 
Sbjct: 309 LFVNMIKFSVTPNIAVYNSLIDAYCKVGDVSEAMALFLELE----RFEV--SPDVFTYSI 362

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I GLC     ++A  +F +M  + I  + VTYNSLI G C     ++A  +  +M + G
Sbjct: 363 LIRGLCSVSRTEEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENG 422

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V+P+V+TF+ ++D  CK   +  A  +   M+++ ++P+  T++ ++DG C  G +  A 
Sbjct: 423 VEPNVITFSTLIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEAL 482

Query: 379 ELFVSMESMG 388
           +L+  M   G
Sbjct: 483 KLYSDMLDNG 492



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 143/269 (53%), Gaps = 11/269 (4%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           S   RL S+   P++Y   I++   CKM  V     +  ++  +  T  A     L+  L
Sbjct: 103 SELSRLKSSKFTPNVYGELIIV--LCKMELVEEALSMYHKV-GAALTIQAC--NVLLYVL 157

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
               R      ++ ++ + G  P+VIT+ TLI+G CR G  + A  +F+EM       G+
Sbjct: 158 VKTGRFELLWRIYEEMISNGLSPSVITFGTLIDGCCRQGDLLRAQEMFDEMRVK----GI 213

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           V  P  + YT +I GLC +  +++A+ +   M++  + P+V TYN+L+ G+C   +  +A
Sbjct: 214 V--PTVIVYTILIRGLCSDNKIEEAESMHRAMREVGVYPNVYTYNTLMDGYCKLANAKQA 271

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  +M+ +G+ PDVVTF +++D LCK G+M  A  L   MI   V PN + +++L+D 
Sbjct: 272 LRLYQDMLGEGLVPDVVTFGILIDGLCKFGEMKAARNLFVNMIKFSVTPNIAVYNSLIDA 331

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +C  G V+ A  LF+ +E       VF+Y
Sbjct: 332 YCKVGDVSEAMALFLELERFEVSPDVFTY 360



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 135/277 (48%), Gaps = 19/277 (6%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L     K       ++LF  L    + PD++TY+ILI   C + R      +
Sbjct: 320 PNIAVYNSLIDAYCKVGDVSEAMALFLELERFEVSPDVFTYSILIRGLCSVSRTEEAGNI 379

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ +     ++V + SLI G C E ++ +A  + +++   G +PNVIT+STLI+G C+
Sbjct: 380 FEKMTKEGILANSVTYNSLIDGCCKEGKMDKALEICSQMTENGVEPNVITFSTLIDGYCK 439

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A+ ++ EM   +        P+ VTYT +IDG CK G + +A +L+  M D  I
Sbjct: 440 IRNLQAAMGIYSEMVIKS------LSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGI 493

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMD----------QGVQPDV---VTFNVIMD 331
            P+  T + L+ G C     ++A  L  E ++           G +P +   V +  ++ 
Sbjct: 494 TPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGSKPSLTNHVAYTALIH 553

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LC++G+  +A +L   M   G+ P+   +  ++ G 
Sbjct: 554 GLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGL 590



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 18/223 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  IF+ M         +T  +L+ GC  + K  D  L +  ++   G+ P++ T++ 
Sbjct: 374 EEAGNIFEKMTKEGILANSVTYNSLIDGCCKEGK-MDKALEICSQMTENGVEPNVITFST 432

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CK+  +     +   ++    +PD V +T++I G C    + EA  L++ +   G
Sbjct: 433 LIDGYCKIRNLQAAMGIYSEMVIKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNG 492

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM---------ANGNGKFGVVCKP---NTVT 255
             PN  T S L++GLC+ G    AL LF E           +  G      KP   N V 
Sbjct: 493 ITPNCYTISCLLDGLCKDGKISDALELFTEKIEFQTPRCNVDAGGS-----KPSLTNHVA 547

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           YT +I GLC++G   KA +LF  M+   + PD V Y  ++ G 
Sbjct: 548 YTALIHGLCQDGQFSKAVKLFSDMRRYGLQPDEVIYVVMLRGL 590



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 47/198 (23%), Positives = 94/198 (47%), Gaps = 24/198 (12%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  M+ ++   P + ++  +     K       L L+  +   G+ P+ YT + L+
Sbjct: 446 AMGIYSEMV-IKSLSPDVVTYTAMIDGHCKYGSMKEALKLYSDMLDNGITPNCYTISCLL 504

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTP----DA----------VAFTSLIKGLCAESRIME 195
           +  CK G++S    +    +    TP    DA          VA+T+LI GLC + +  +
Sbjct: 505 DGLCKDGKISDALELFTEKIEF-QTPRCNVDAGGSKPSLTNHVAYTALIHGLCQDGQFSK 563

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  LF+ ++ +G +P+ + Y  ++ GL +  + ++ L+   +M     KFGV+  PN+  
Sbjct: 564 AVKLFSDMRRYGLQPDEVIYVVMLRGLFQVKYILMMLH--ADML----KFGVI--PNSAV 615

Query: 256 YTTIIDGLCKEGFVDKAK 273
           +  + +   + GF+  A+
Sbjct: 616 HVILCECYQESGFLKSAQ 633


>gi|115482730|ref|NP_001064958.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|41152691|dbj|BAD08215.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|113639567|dbj|BAF26872.1| Os10g0497300 [Oryza sativa Japonica Group]
 gi|215693996|dbj|BAG89195.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 794

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/312 (35%), Positives = 169/312 (54%), Gaps = 10/312 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P+L TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            ILI   C  GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++ 
Sbjct: 95  GILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRMT 154

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L + M +  G     C P+ V+YTT+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG +DKA   + +M D+ I P+VVTY+S+I   C A   ++A  +L  M+  GV P+  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR   A+++F SM
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 331 TKRGLKPEITTY 342



 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 176/347 (50%), Gaps = 35/347 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++A+  +  ML+ R   P + +++ +   L K +  D  + +   +   G+
Sbjct: 212 EGDL-----DKAYGTYHEMLD-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN +++ +C  G+       L ++      PD V + SL+  LC   R  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NG--------------NG 243
           +F  +   G KP + TY TL+ G    G  +    L + M  NG                
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 244 KFGVVCK--------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           K G V +              P+TVTY T+I  LCK G V+ A   F QM D+ ++P  +
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YNSLIH  C  + W++A  L++EM+D+G+  D + FN I+D  CK G++ E+ +L +LM
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  GV P+  T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C  + QG +     ++A  +F  M     +P  +T +  + G L K+   +  +  F+++
Sbjct: 382 CAYAKQGKV-----DQAMLVFSKMRQQGLNPDTVT-YGTVIGILCKSGRVEDAMRYFEQM 435

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
               L P    YN LI+  C   +      ++  +L      D + F S+I   C E R+
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           +E+  LF  +   G KP++ITYSTLI+G C  G    A  L   M +      V  KP+ 
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS------VGMKPDC 549

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY T+I+G CK   ++ A  LF +M+   ++PD++TYN ++ G         A  L + 
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           + + G Q ++ T+N+I+  LCKN   DEA R+ + + L  +   T TF+ ++      GR
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LF ++ + G    V +Y
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTY 692



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G+V    +V  ++ +    PD V + ++I  LC   R+ +A   F ++     
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  I Y++LI+ LC       A  L  EM +       +C  +T+ + +IID  CKEG 
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG-----IC-LDTIFFNSIIDSHCKEGR 494

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TY++LI G+C A   +EA  LL  M+  G++PD VT+N 
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  CK  +M++A  L   M   GV+P+  T++ ++ G   T R   AKEL+V +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 615 TQLELSTY 622



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ M++ R SP  +  +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GRV     +   ++R    PD + +++LI G C   ++ EA  L   + + G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+TLING C+      AL LF EM +     GV   P+ +TY  I+ GL +   
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKEL++ + +     ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN+
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+ DEA  L   +   G+ P+  T+S + +     G +    +LF+SME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 389 C 389
           C
Sbjct: 720 C 720



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 67  EQFLKERCKSSGQGDITAITPNEAFCIFD-------YMLNMRPSPPPLTS--FNLLFGCL 117
           EQ + ER      G+I   +   + CIFD        +L M      L +  FN +    
Sbjct: 433 EQMIDERLSP---GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
            K         LF  +   G+ PD+ TY+ LI+ +C  G++     +L  ++     PD 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V + +LI G C  SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +     +          TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I  
Sbjct: 610 ITESGTQL------ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 663

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                  +EA  L   +   G+ PDV T++++ + L + G ++E   L   M   G   N
Sbjct: 664 LLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTAN 723

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           +   ++++      G +  A
Sbjct: 724 SRMLNSIVRKLLQRGDITRA 743



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 668

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF  +    + PDV TY+ +           E + L + M + G   +    N
Sbjct: 669 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLN 728

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ +L + G +  A   L ++  +  +   ST S  +D
Sbjct: 729 SIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|110289336|gb|ABG66168.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 484

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 112/313 (35%), Positives = 169/313 (53%), Gaps = 10/313 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYT 144
            +A  +FD +L  R     +   N     +A+      V S + R+   G   + P+L T
Sbjct: 36  EDARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCT 93

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKL 203
           Y ILI   C  GR+  GF  LG +++  F  DA+AFT L+KGLCA+ R  +A  +   ++
Sbjct: 94  YGILIGSCCCAGRLDLGFAALGNVIKKGFRVDAIAFTPLLKGLCADKRTSDAMDIVLRRM 153

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              GC PNV +Y+ L+ GLC    +  AL L + M +  G     C P+ V+YTT+I+G 
Sbjct: 154 TQLGCIPNVFSYNILLKGLCDENRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGF 209

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            KEG +DKA   + +M D+ I P+VVTY+S+I   C A   ++A  +L  M+  GV P+ 
Sbjct: 210 FKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNC 269

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR   A+++F S
Sbjct: 270 RTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDS 329

Query: 384 MESMGCKHTVFSY 396
           M   G K  + +Y
Sbjct: 330 MTKRGLKPEITTY 342



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 141/282 (50%), Gaps = 8/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGF 162
           P + S+N+L   L         L L + +   G    PD+ +Y  +IN F K G +   +
Sbjct: 160 PNVFSYNILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAY 219

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +L     P+ V ++S+I  LC    + +A  + T +   G  PN  TY+++++G 
Sbjct: 220 GTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGY 279

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C +G    A+   ++M +         +P+ VTY +++D LCK G   +A+++F  M  +
Sbjct: 280 CSSGQPKEAIGFLKKMHSDG------VEPDVVTYNSLMDYLCKNGRCTEARKMFDSMTKR 333

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + P++ TY +L+ G+       E + LL  M+  G+ P+   F++++    K GK+D+A
Sbjct: 334 GLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQA 393

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             +   M  +G+NP+T T+ T++   C +GRV  A   F  M
Sbjct: 394 MLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQM 435



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 147/304 (48%), Gaps = 11/304 (3%)

Query: 97  MLNMRPS-----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +L M P      PP + S+  +     K    D     +  +   G+ P++ TY+ +I  
Sbjct: 184 LLQMMPDDGGDCPPDVVSYTTVINGFFKEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAA 243

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK   +     VL  ++++   P+   + S++ G C+  +  EA     K+ + G +P+
Sbjct: 244 LCKAQAMDKAMEVLTSMVKNGVMPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPD 303

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+TY++L++ LC+ G    A  +F+ M     K G+  KP   TY T++ G   +G + +
Sbjct: 304 VVTYNSLMDYLCKNGRCTEARKMFDSMT----KRGL--KPEITTYGTLLQGYATKGALVE 357

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
              L   M    I+P+   ++ LI  +      ++A  +  +M  QG+ PD VT+  ++ 
Sbjct: 358 MHGLLDLMVRNGIHPNHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIG 417

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LCK+G++++A R  E MI   ++P    +++L+   C+  + + AK+ F+         
Sbjct: 418 ILCKSGRVEDAMRYFEQMIDERLSPGNIVYNSLIHSLCIFDKWDKAKDYFLKCWIEAFVW 477

Query: 392 TVFS 395
           T+FS
Sbjct: 478 TLFS 481


>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
          Length = 948

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 166/322 (51%), Gaps = 31/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N++   L K   +DT+  ++  + + G  P++ TY  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P  V +T LI+GLC ESRI EA ++F  ++  G  PN+ TY+T+++G C+
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 225 TGHTIVALNLFEEMANGNG------KFGV----VCK--------------------PNTV 254
             H   AL L++EM  G+G       FG+    +CK                    PN  
Sbjct: 276 IAHVKKALELYQEML-GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            Y  +IDG CK G + +A  L  +++   I PDV TY+ LI G C  +   EA+ LL EM
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +G  P+ VT+N ++D  CK G M++A  +   M  +G+ PN  TFSTL+DG+C  G++
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  L+  M   G    V +Y
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAY 476



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 170/334 (50%), Gaps = 35/334 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD       +AF +FD M+  +   P +  + +L   L          S+F+ + ++G+
Sbjct: 206 QGDFL-----KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+LYTYN +++ +CK+  V     +   +L     P+ V F  LI GLC    ++ A  
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE--------------------- 237
               + +FG  PN+  Y+ LI+G C+ G+   AL+L  E                     
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 238 ----MANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               M   +G    + K    PN VTY T+IDG CKEG ++KA E+  QM +K I P+++
Sbjct: 380 GVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNII 439

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+++LI G+C A     A  L  EM+ +G+ PDVV +  ++D   K+G   EA RL + M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
              G++PN  T S L+DG C  GR++ A +LF++
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/211 (21%), Positives = 92/211 (43%), Gaps = 16/211 (7%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D+ +    +K    +S ++E   +   +  FG +P +   ++LI+    TG+   A N+F
Sbjct: 630 DSFSLMFALKACTLKSSLVEGKQMHALVINFGFEPIIFLQTSLISMYSATGNVADAHNMF 689

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           +E+ +           N +++T++I         +KA +LF QM+  ++ PD+VT    +
Sbjct: 690 DEIPS----------KNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTVTVAL 739

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
                    +    +   +  +G+  D+   N +++   K G++  A R   ++      
Sbjct: 740 SACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRFSLVL------ 793

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           PN  TF  ++      G V   K+ F SM+ 
Sbjct: 794 PNDVTFMGVLMACSHAGLVEEGKQHFRSMKE 824



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/295 (20%), Positives = 122/295 (41%), Gaps = 38/295 (12%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST----GLFPDLYTYNILINCFCKM 155
           +R +P  + SF+L+F   A T     V    K++++     G  P ++    LI+ +   
Sbjct: 622 LRKNPSSIDSFSLMFALKACTLKSSLVEG--KQMHALVINFGFEPIIFLQTSLISMYSAT 679

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G V+    +   I     + + +++TS+I       R  +A  LF +++    +P+++T 
Sbjct: 680 GNVADAHNMFDEIP----SKNLISWTSVISAYVDNQRPNKALQLFRQMQMDDVQPDIVTV 735

Query: 216 STLIN-----GLCRTGHTIVAL-------------NLFEEMANGNGKFGVVCK-----PN 252
           +  ++     G    G  I A              N    M +  G+ G   +     PN
Sbjct: 736 TVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARRFSLVLPN 795

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMK-DKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
            VT+  ++      G V++ K+ F  MK D ++ P +  +  ++   C A    EA   +
Sbjct: 796 DVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRAGLLTEAYEFI 855

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++M    V+P+ V +  ++      G  D+   L+   I +  +P  S+    +D
Sbjct: 856 LKM---PVRPNAVVWRTLLGACSLQGMWDK-KMLVRNQIKQRRDPGCSSIEVGID 906


>gi|297848852|ref|XP_002892307.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
 gi|297338149|gb|EFH68566.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 1164

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 150/284 (52%), Gaps = 6/284 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P   ++  + G L +          F  +   G+ PD   Y  L++ FCK G +      
Sbjct: 737  PNSYTYGSIIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKF 796

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               +     TPD + +T++I G C    ++EA  LF ++   G +P++IT++ L+NG C+
Sbjct: 797  FYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYCK 856

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             GH   A  +   M          C PN VTYTT+IDGLCKEG +D A EL  +M    +
Sbjct: 857  AGHIKDAFRVHNHMIQAG------CSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGL 910

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             P++ TYNS+++G C + +  EA  L+ E    G+  D VT+  +MD  CK+G+MD+A  
Sbjct: 911  QPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQE 970

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +L  M+ +G+ P   TF+ LM+GFCL G +   ++L   M + G
Sbjct: 971  ILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 155/272 (56%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           T + +F+     G+  ++ +YNI+I+  C++GR++    +L  +    +TPD ++++++I
Sbjct: 652 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRINEAHHLLLLMELKGYTPDVISYSTVI 711

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            G C    + +   L  K+K  G KPN  TY ++I  LCR      A   F EM  G G 
Sbjct: 712 NGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGSIIGLLCRICKLAEAEEAFSEMI-GQGI 770

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 P+T+ YTT++DG CK G +  A + F +M  ++I PDV+TY ++I GFC   D 
Sbjct: 771 L-----PDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 825

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  L  EM+ +G++PD++TF  +M+  CK G + +A R+   MI  G +PN  T++TL
Sbjct: 826 VEAGKLFHEMLCRGLEPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTL 885

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DG C  G ++ A EL   M  +G +  +F+Y
Sbjct: 886 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 917



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 168/312 (53%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +   ++ ++   P + S++ +     +    D V  L +++   GL P+ YTY  
Sbjct: 686 NEAHHLL-LLMELKGYTPDVISYSTVINGYCRFGELDKVWKLIEKMKQKGLKPNSYTYGS 744

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I   C++ +++        ++     PD + +T+L+ G C    I  A+  F ++ +  
Sbjct: 745 IIGLLCRICKLAEAEEAFSEMIGQGILPDTIVYTTLVDGFCKRGDIRAASKFFYEMHSRD 804

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLC 264
             P+V+TY+ +I+G C+ G  + A  LF EM         +C+   P+ +T+T +++G C
Sbjct: 805 ITPDVLTYTAIISGFCQIGDMVEAGKLFHEM---------LCRGLEPDIITFTELMNGYC 855

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G +  A  +   M     +P+VVTY +LI G C   D + AN LL EM   G+QP++ 
Sbjct: 856 KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIF 915

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I++ LCK+G ++EA +L+      G+N +T T++TLMD +C +G ++ A+E+   M
Sbjct: 916 TYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEM 975

Query: 385 ESMGCKHTVFSY 396
              G + T+ ++
Sbjct: 976 LGKGLQPTIVTF 987



 Score =  179 bits (453), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 150/262 (57%), Gaps = 6/262 (2%)

Query: 129  LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
             F  ++S  + PD+ TY  +I+ FC++G +     +   +L     PD + FT L+ G C
Sbjct: 796  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGLEPDIITFTELMNGYC 855

Query: 189  AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
                I +A  +   +   GC PNV+TY+TLI+GLC+ G    A  L  EM      + + 
Sbjct: 856  KAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM------WKIG 909

Query: 249  CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             +PN  TY +I++GLCK G +++A +L  + +   +N D VTY +L+  +C + + ++A 
Sbjct: 910  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 969

Query: 309  CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +L EM+ +G+QP +VTFNV+M+  C +G +++  +LL  M+ +G+ PN +TF+ L+  +
Sbjct: 970  EILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNCLVKQY 1029

Query: 369  CLTGRVNHAKELFVSMESMGCK 390
            C+   +  A  ++  M S G +
Sbjct: 1030 CIRNNLKAATAIYKDMCSRGVE 1051



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 163/318 (51%), Gaps = 12/318 (3%)

Query: 79   QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            +GDI A +       F Y ++ R   P + ++  +     +         LF  +   GL
Sbjct: 787  RGDIRAASK------FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMLCRGL 840

Query: 139  FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             PD+ T+  L+N +CK G +   F V   ++++  +P+ V +T+LI GLC E  +  A  
Sbjct: 841  EPDIITFTELMNGYCKAGHIKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 900

Query: 199  LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            L  ++   G +PN+ TY++++NGLC++G+   A+ L  E              +TVTYTT
Sbjct: 901  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG------LNADTVTYTT 954

Query: 259  IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            ++D  CK G +DKA+E+  +M  K + P +VT+N L++GFC      +   LL  M+ +G
Sbjct: 955  LMDAYCKSGEMDKAQEILTEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1014

Query: 319  VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            + P+  TFN ++ + C    +  A+ + + M  RGV P+  T+  L+ G C    +  A 
Sbjct: 1015 IAPNATTFNCLVKQYCIRNNLKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAW 1074

Query: 379  ELFVSMESMGCKHTVFSY 396
             LF  M+  G   +V +Y
Sbjct: 1075 FLFQEMKGKGFSVSVSTY 1092



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 128/278 (46%), Gaps = 7/278 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            +AF + ++M+    SP  +T   L+ G L K    D+   L   +   GL P+++TYN +
Sbjct: 862  DAFRVHNHMIQAGCSPNVVTYTTLIDG-LCKEGDLDSANELLHEMWKIGLQPNIFTYNSI 920

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            +N  CK G +     ++G    +    D V +T+L+   C    + +A  + T++   G 
Sbjct: 921  VNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILTEMLGKGL 980

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            +P ++T++ L+NG C  G     L   E++ N     G+   PN  T+  ++   C    
Sbjct: 981  QPTIVTFNVLMNGFCLHG----MLEDGEKLLNWMLAKGIA--PNATTFNCLVKQYCIRNN 1034

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +  A  ++  M  + + PD  TY +L+ G C A +  EA  L  EM  +G    V T++V
Sbjct: 1035 LKAATAIYKDMCSRGVEPDGKTYENLVKGHCNARNMKEAWFLFQEMKGKGFSVSVSTYSV 1094

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            ++    K  K  EA  + + M   G+  +   F    D
Sbjct: 1095 LIKGFFKRKKFVEAREIFDQMRRDGLAADKEIFDFFSD 1132


>gi|255547341|ref|XP_002514728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546332|gb|EEF47834.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 517

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/277 (34%), Positives = 162/277 (58%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N L   L K   +D +  L+  + S  LFP + TYN+L++  C+ G V     +
Sbjct: 149 PAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGDVLRAKSL 208

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +++    P  V +T+LI GLC+ES++MEA ++F ++K  G  PN+ TY+ L++G C+
Sbjct: 209 ISEMVKKGIEPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPNLYTYNVLMDGYCK 268

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T +   AL+L++ M +         +PN VT+  +ID LCK   +  A+  F+QM    +
Sbjct: 269 TANVKQALHLYQGMLDDG------LQPNVVTFGILIDALCKVRELLAARRFFVQMAKFGV 322

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VV +NSLI G+  A + +EA  LL+EM    + PDV T+++++   C+ G ++EA  
Sbjct: 323 VPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTYSILIKNACRLGTVEEADD 382

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +L+ M   GV  N+  +++L+DG+C  G +  A E+F
Sbjct: 383 ILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEIF 419



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 108/349 (30%), Positives = 162/349 (46%), Gaps = 38/349 (10%)

Query: 77  SGQGDITAI-----TPNEAFCIFDYMLNMRPSPP--PLTSFNLLFGCLAKTKHYDTVLSL 129
           S   D+T I     TP +A   F  +L   P+ P   L  ++ +   L   K Y T   L
Sbjct: 25  SPPSDLTTIILHSKTPEQALDTFTSVLKQNPNNPTKKLHLYSAVIHYLTGAKVYPTARCL 84

Query: 130 FKRLNSTGL------------FPDLY----------TYNILINCFCKMGRVSHGFVVLGR 167
            K L  T L            F  L            + +LI  F ++G V     V   
Sbjct: 85  TKDLIQTLLQSCTPRRVNSLVFNALSQLRGSKFNPSVFGVLIIAFSEVGLVDEALRVY-- 142

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
            L+    P   A  +L+ GL  +S       L+  + +    P V+TY+ L++  CR G 
Sbjct: 143 -LKVGAFPAVQACNALLNGLLKKSSFDIMWELYNNMVSRRLFPTVVTYNVLVDACCRQGD 201

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
            + A +L  EM     K G+  +P  V YTT+I GLC E  + +A+ +F QMKD  + P+
Sbjct: 202 VLRAKSLISEMV----KKGI--EPTVVIYTTLIHGLCSESKLMEAESMFRQMKDSGVFPN 255

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           + TYN L+ G+C   +  +A  L   M+D G+QP+VVTF +++D LCK  ++  A R   
Sbjct: 256 LYTYNVLMDGYCKTANVKQALHLYQGMLDDGLQPNVVTFGILIDALCKVRELLAARRFFV 315

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M   GV PN   F++L+DG+   G  + A +L + ME       VF+Y
Sbjct: 316 QMAKFGVVPNVVVFNSLIDGYSKAGNCSEATDLLLEMEKFKISPDVFTY 364



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 27/134 (20%), Positives = 55/134 (41%), Gaps = 6/134 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L     +    +    + KR+   G+  +   YN LI+ +CK G +     +
Sbjct: 359 PDVFTYSILIKNACRLGTVEEADDILKRMEKEGVPANSVVYNSLIDGYCKEGNMEKALEI 418

Query: 165 L------GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                    + R+   PDA+A+  +++G      + +   L   +   G  PN +T   +
Sbjct: 419 FKATKFFSDMRRNGLRPDALAYAVMLQGHLNAKHMADVMMLHADMIKMGIVPNEVTSQVV 478

Query: 219 INGLCRTGHTIVAL 232
             G    G+   AL
Sbjct: 479 RRGYQDNGYLKSAL 492


>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
 gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
          Length = 600

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/310 (35%), Positives = 165/310 (53%), Gaps = 11/310 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IFD  +  R   P + ++N L     K    D    + +R+ S  L PD+ TYN 
Sbjct: 137 DEALKIFDGAVK-RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNS 195

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAF 206
           L+N  CK GRV    ++   I+   F+P+ + +++LI GLC E R +E+A  L  K+   
Sbjct: 196 LVNGLCKNGRVDEARML---IVDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLN 252

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GCKP++++Y+ LI+GL R      AL LF  +           +P   TY  +IDGL KE
Sbjct: 253 GCKPDIVSYNALIHGLAREQGVSEALKLFGSVLRQG------YEPEVPTYNILIDGLLKE 306

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V++A ELF  +    + PD +TY   I G C A    +A  +L +M ++G  PDVV+ 
Sbjct: 307 DRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH 366

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N +++ LCK  ++DEA  LL  M  +G +PN  +F+TL+ G C  G+   A   F  M  
Sbjct: 367 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 426

Query: 387 MGCKHTVFSY 396
            G K TV +Y
Sbjct: 427 RGVKPTVVTY 436



 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 11/296 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L   LA+ +     L LF  +   G  P++ TYNILI+   K  RV+  F +
Sbjct: 256 PDIVSYNALIHGLAREQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFEL 315

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    PDA+ +T  I GLC   R+ +A  +   +   GC P+V++++ +INGLC+
Sbjct: 316 FSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCK 375

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                 A  L   M A G       C PN +++ T+I G C+ G   KA   F +M  + 
Sbjct: 376 EKRVDEAEVLLSGMEAKG-------CSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRG 428

Query: 284 INPDVVTYNSLIHGFCYANDWN---EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           + P VVTYN L+ G C A       EA  L   M+++G  PDVVT++ ++D L K GK+D
Sbjct: 429 VKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLD 488

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A RLL  M  +G  PN  T+++L+ G C   +V+ A ELFV+M   GC     +Y
Sbjct: 489 DARRLLGAMEAKGCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITY 544



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 111/297 (37%), Positives = 159/297 (53%), Gaps = 10/297 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  +L  +   P + ++N+L   L K    +    LF  L   GL PD  TY +
Sbjct: 275 SEALKLFGSVLR-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 333

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+  CK GRV    ++L  +      PD V+  ++I GLC E R+ EA  L + ++A G
Sbjct: 334 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 393

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK-- 265
           C PN I+++TLI G CR G    A+  F+EM     K GV  KP  VTY  ++DGLCK  
Sbjct: 394 CSPNAISFNTLICGQCRAGKWKKAMTTFKEML----KRGV--KPTVVTYNILVDGLCKAR 447

Query: 266 -EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
            EG + +A  LF  M +K   PDVVTY++LI G   A   ++A  LL  M  +G  P+V 
Sbjct: 448 QEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 507

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           T+N ++  LC   K+DEA  L   M+ +G  P+T T+ T++   C    V+ A  LF
Sbjct: 508 TYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKALALF 564



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 172/336 (51%), Gaps = 19/336 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D ++   ++   C++S  GD        A  +FD M      P  +T +N L   L    
Sbjct: 49  DISTFNIYISGLCRASRIGD--------AQTVFDGMRKHGFWPNRIT-YNALLSGLCNGG 99

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
                 +L++R+   G  PD+ TYN L++ FCK+G++     +    ++  F PD V + 
Sbjct: 100 RMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYN 159

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI G C   ++ EA  +  ++ +    P+V+TY++L+NGLC+ G    A  L  +    
Sbjct: 160 ALINGFCKADKLDEAQRILQRMVSESLVPDVVTYNSLVNGLCKNGRVDEARMLIVDKG-- 217

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKE-GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                    PN +TY+T+I GLC+E   ++ A++L  +M      PD+V+YN+LIHG   
Sbjct: 218 -------FSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNALIHGLAR 270

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
               +EA  L   ++ QG +P+V T+N+++D L K  +++EA  L   ++  G+ P+  T
Sbjct: 271 EQGVSEALKLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAIT 330

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++  +DG C  GRV  A  +   M+  GC   V S+
Sbjct: 331 YTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH 366



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/260 (38%), Positives = 145/260 (55%), Gaps = 15/260 (5%)

Query: 140 PDLYTYNILINCFCKMGRV--SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           PD YT  IL+    K G++  +H FV    +   C   D   F   I GLC  SRI +A 
Sbjct: 14  PDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC---DISTFNIYISGLCRASRIGDAQ 70

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            +F  ++  G  PN ITY+ L++GLC  G    A  L+E M            P+ VTY 
Sbjct: 71  TVFDGMRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAG------YSPDVVTYN 124

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++ G CK G +D+A ++F     +   PDVVTYN+LI+GFC A+  +EA  +L  M+ +
Sbjct: 125 TLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSE 184

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT-GRVNH 376
            + PDVVT+N +++ LCKNG++DEA  L+   + +G +PN  T+STL+ G C    R+  
Sbjct: 185 SLVPDVVTYNSLVNGLCKNGRVDEARMLI---VDKGFSPNVITYSTLISGLCRELRRLES 241

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A++L   M   GCK  + SY
Sbjct: 242 ARQLLEKMVLNGCKPDIVSY 261



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 73/212 (34%), Positives = 118/212 (55%), Gaps = 9/212 (4%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVA 231
           ++PDA     L++ L    +I +A     +L   G C  ++ T++  I+GLCR      A
Sbjct: 12  YSPDAYTVGILLRSLLKSGKIEKAHRFVEQLLVKGLC--DISTFNIYISGLCRASRIGDA 69

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             +F+ M     K G    PN +TY  ++ GLC  G +  A+ L+ +M     +PDVVTY
Sbjct: 70  QTVFDGMR----KHGFW--PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTY 123

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N+L+HGFC     +EA  +    + +G  PDVVT+N +++  CK  K+DEA R+L+ M+ 
Sbjct: 124 NTLLHGFCKVGKLDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVS 183

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             + P+  T+++L++G C  GRV+ A+ L V 
Sbjct: 184 ESLVPDVVTYNSLVNGLCKNGRVDEARMLIVD 215


>gi|46091165|dbj|BAD13711.1| PPR protein [Oryza sativa Indica Group]
          Length = 794

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/347 (31%), Positives = 176/347 (50%), Gaps = 35/347 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     ++A+  +  ML+ R   P + +++ +   L K +  D  + +   +   G+
Sbjct: 212 EGDL-----DKAYGTYHEMLD-RGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGV 265

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN +++ +C  G+       L ++      PD V + SL+  LC   R  EA  
Sbjct: 266 MPNCRTYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARK 325

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NG--------------NG 243
           +F  +   G KP + TY TL+ G    G  +    L + M  NG                
Sbjct: 326 MFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILICAYA 385

Query: 244 KFGVVCK--------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           K G V +              P+TVTY T+I  LCK G V+ A   F QM D+ ++P  +
Sbjct: 386 KQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERLSPGNI 445

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YNSLIH  C  + W++A  L++EM+D+G+  D + FN I+D  CK G++ E+ +L +LM
Sbjct: 446 VYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRVIESEKLFDLM 505

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  GV P+  T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 506 VRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTY 552



 Score =  187 bits (476), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 110/312 (35%), Positives = 169/312 (54%), Gaps = 10/312 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTY 145
           +A  +FD +L  R     +   N     +A+      V S + R+   G   + P+L TY
Sbjct: 37  DARHVFDELLR-RGRGASIYGLNCALADVARHSPAAAV-SRYNRMARAGADEVTPNLCTY 94

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
            IL+   C  GR+  GF  LG +++  F  DA+AFT ++KGLCA+ R  +A  +   ++ 
Sbjct: 95  GILMGSCCCAGRLDLGFAALGNVIKKGFIVDAIAFTPMLKGLCADKRTSDAMDIVLRRMT 154

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV +Y+ L+ GLC    +  AL L + M +  G     C P+ V+YTT+I+G  
Sbjct: 155 QLGCIPNVFSYNILLKGLCDDNRSQEALELLQMMPDDGGD----CPPDVVSYTTVINGFF 210

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG +DKA   + +M D+ I P+VVTY+S+I   C A   ++A  +L  M+  GV P+  
Sbjct: 211 KEGDLDKAYGTYHEMLDRGILPNVVTYSSIIAALCKAQAMDKAMEVLTSMVKNGVMPNCR 270

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I+   C +G+  EA   L+ M   GV P+  T+++LMD  C  GR   A+++F SM
Sbjct: 271 TYNSIVHGYCSSGQPKEAIGFLKKMHSDGVEPDVVTYNSLMDYLCKNGRCTEARKMFDSM 330

Query: 385 ESMGCKHTVFSY 396
              G K  + +Y
Sbjct: 331 TKRGLKPEITTY 342



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 95/323 (29%), Positives = 159/323 (49%), Gaps = 12/323 (3%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C  + QG +     ++A  +F  M     +P  +T +  + G L K+   +  +  F+++
Sbjct: 382 CAYAKQGKV-----DQAMLVFSKMRQQGLNPDTVT-YGTVIGILCKSGRVEDAMRYFEQM 435

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
               L P    YN LI+  C   +      ++  +L      D + F S+I   C E R+
Sbjct: 436 IDERLSPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSHCKEGRV 495

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           +E+  LF  +   G KP++ITYSTLI+G C  G    A  L   M +      V  KP+ 
Sbjct: 496 IESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVS------VGMKPDC 549

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY T+I+G CK   ++ A  LF +M+   ++PD++TYN ++ G         A  L + 
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           + + G Q ++ T+N+I+  LCKN   DEA R+ + + L  +   T TF+ ++      GR
Sbjct: 610 ITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGR 669

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + AK+LF ++ + G    V +Y
Sbjct: 670 NDEAKDLFAALSANGLVPDVRTY 692



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 322 EARKMFDSMTK-RGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G+V    +V  ++ +    PD V + ++I  LC   R+ +A   F ++     
Sbjct: 381 ICAYAKQGKVDQAMLVFSKMRQQGLNPDTVTYGTVIGILCKSGRVEDAMRYFEQMIDERL 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  I Y++LI+ LC       A  L  EM +       +C  +T+ + +IID  CKEG 
Sbjct: 441 SPGNIVYNSLIHSLCIFDKWDKAKELILEMLDRG-----IC-LDTIFFNSIIDSHCKEGR 494

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V ++++LF  M    + PD++TY++LI G+C A   +EA  LL  M+  G++PD VT+N 
Sbjct: 495 VIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  CK  +M++A  L   M   GV+P+  T++ ++ G   T R   AKEL+V +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 615 TQLELSTY 622



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 7/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A   F+ M++ R SP  +  +N L   L     +D    L   +   G+  D   +N +
Sbjct: 427 DAMRYFEQMIDERLSPGNIV-YNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSI 485

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GRV     +   ++R    PD + +++LI G C   ++ EA  L   + + G 
Sbjct: 486 IDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGM 545

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+TLING C+      AL LF EM +     GV   P+ +TY  I+ GL +   
Sbjct: 546 KPDCVTYNTLINGYCKISRMEDALVLFREMESS----GV--SPDIITYNIILQGLFQTRR 599

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              AKEL++ + +     ++ TYN ++HG C  N  +EA  +   +    +Q +  TFN+
Sbjct: 600 TAAAKELYVGITESGTQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNI 659

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+ DEA  L   +   G+ P+  T+S + +     G +    +LF+SME  G
Sbjct: 660 MIGALLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENG 719

Query: 389 C 389
           C
Sbjct: 720 C 720



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 142/320 (44%), Gaps = 18/320 (5%)

Query: 67  EQFLKERCKSSGQGDITAITPNEAFCIFD-------YMLNMRPSPPPLTS--FNLLFGCL 117
           EQ + ER      G+I   +   + CIFD        +L M      L +  FN +    
Sbjct: 433 EQMIDERLSP---GNIVYNSLIHSLCIFDKWDKAKELILEMLDRGICLDTIFFNSIIDSH 489

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
            K         LF  +   G+ PD+ TY+ LI+ +C  G++     +L  ++     PD 
Sbjct: 490 CKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEATKLLASMVSVGMKPDC 549

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V + +LI G C  SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  
Sbjct: 550 VTYNTLINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVG 609

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +     +          TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I  
Sbjct: 610 ITESGTQL------ELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGA 663

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                  +EA  L   +   G+ PDV T++++ + L + G ++E   L   M   G   N
Sbjct: 664 LLKVGRNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTAN 723

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           +   ++++      G +  A
Sbjct: 724 SRMLNSIVRKLLQRGDITRA 743



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 129/279 (46%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 497 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEATKLLASMVSVGMKPDCVTYNT 554

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+  +   G
Sbjct: 555 LINGYCKISRMEDALVLFREMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVGITESG 614

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 615 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 668

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF  +    + PDV TY+ +           E + L + M + G   +    N
Sbjct: 669 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLN 728

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ +L + G +  A   L ++  +  +   ST S  +D
Sbjct: 729 SIVRKLLQRGDITRAGTYLFMIDEKHFSLEASTASLFLD 767


>gi|357130063|ref|XP_003566676.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 822

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 111/318 (34%), Positives = 164/318 (51%), Gaps = 15/318 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P+ A  +F+ +      P    P + ++N+L  C  +        +LF R   TGL  D+
Sbjct: 95  PSLAVALFNRICREEARPRVALPTVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDV 154

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              NIL+ C C   R      V+L R+      PD +++++++K LC +SR   A  L  
Sbjct: 155 IVANILLKCLCHAKRSDDAVNVLLHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLH 214

Query: 202 KL--KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +  K+ GC PNV++Y+T+I+G  R G    A NLF EM     + GVV  P+ VTY++ 
Sbjct: 215 TMVKKSGGCSPNVVSYNTVIHGFFREGEVSKACNLFHEMM----QQGVV--PDVVTYSSY 268

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ID LCK   +DKA+ +  QM      PD VTYN +IHG+     W E   +  EM  +G+
Sbjct: 269 IDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGL 328

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD+ T N  M  LCK+GK  EA+   + M  +G  P+  T+S L+ G+   G V     
Sbjct: 329 MPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAAEGYVVDMLN 388

Query: 380 LFVSMESMG--CKHTVFS 395
           LF SME  G    H+V++
Sbjct: 389 LFNSMEGNGIVADHSVYN 406



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   FD M   +   P L ++++L    A   +   +L+LF  +   G+  D   YNIL
Sbjct: 350 EAAEFFDSMA-AKGHKPDLVTYSVLLHGYAAEGYVVDMLNLFNSMEGNGIVADHSVYNIL 408

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ + K G +    ++  ++      PDA  + ++I       R+ +A   F ++ A G 
Sbjct: 409 IDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGL 468

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ I Y++LI G C  G+ + A  L  EM +       + +PNTV + +II+ LCKEG 
Sbjct: 469 KPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRG-----IPRPNTVFFNSIINSLCKEGR 523

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A+++F  +      PDV+T+NSLI G+       +A  +L  M+  G++PDVVT++ 
Sbjct: 524 VVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSA 583

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++D  C+NG++D+   L   M+ +GV P T T+  ++ G    GR   AK++
Sbjct: 584 LLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKM 635



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 157/317 (49%), Gaps = 18/317 (5%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRL-----NSTGLFP 140
           +FD +L  + +P P  + N     LA+     T        ++LF R+           P
Sbjct: 59  LFDELLR-QTTPVPERALNGFLTALARAPSSATCRDGPSLAVALFNRICREEARPRVALP 117

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-AL 199
            + TYNIL++C C+  R + GF + GR L++    D +    L+K LC   R  +A   L
Sbjct: 118 TVCTYNILMDCCCRAHRPTVGFALFGRFLKTGLKTDVIVANILLKCLCHAKRSDDAVNVL 177

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   G +P+ I+YST++  LC    +  AL+L   M   +G     C PN V+Y T+
Sbjct: 178 LHRMPELGVEPDTISYSTVLKSLCEDSRSQRALDLLHTMVKKSGG----CSPNVVSYNTV 233

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G  +EG V KA  LF +M  + + PDVVTY+S I   C A   ++A  +L +M+  G 
Sbjct: 234 IHGFFREGEVSKACNLFHEMMQQGVVPDVVTYSSYIDALCKARAMDKAELVLRQMISNGF 293

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PD VT+N ++      G+  E + +   M  RG+ P+  T ++ M   C  G+   A E
Sbjct: 294 EPDKVTYNCMIHGYSILGQWKETAGMFREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAE 353

Query: 380 LFVSMESMGCKHTVFSY 396
            F SM + G K  + +Y
Sbjct: 354 FFDSMAAKGHKPDLVTY 370



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 101/357 (28%), Positives = 157/357 (43%), Gaps = 65/357 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++     L K +  D    + +++ S G  PD  TYN +I+ +  +G+      +
Sbjct: 260 PDVVTYSSYIDALCKARAMDKAELVLRQMISNGFEPDKVTYNCMIHGYSILGQWKETAGM 319

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R    PD     S +  LC   +  EAA  F  + A G KP+++TYS L++G   
Sbjct: 320 FREMTRRGLMPDIFTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPDLVTYSVLLHGYAA 379

Query: 225 TGHTIVALNLFEEM-ANG--------------NGKFGVV--------------CKPNTVT 255
            G+ +  LNLF  M  NG               GK G++                P+  T
Sbjct: 380 EGYVVDMLNLFNSMEGNGIVADHSVYNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWT 439

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+I    + G +  A + F QM    + PD + YNSLI GFC   +  +A  L+ EMM
Sbjct: 440 YGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMM 499

Query: 316 DQGV------------------------------------QPDVVTFNVIMDELCKNGKM 339
            +G+                                    +PDV+TFN ++D     GKM
Sbjct: 500 SRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKM 559

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++A  +L+ MI  G+ P+  T+S L+DG+C  GR++    LF  M S G K T  +Y
Sbjct: 560 EKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITY 616



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 148/285 (51%), Gaps = 7/285 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N+L     K    D  + +F ++   G+ PD +TY  +I  F +MGR++       +++
Sbjct: 405 YNILIDAYGKRGMMDEAMLIFTQMQERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMI 464

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                PD + + SLI+G C    +++A  L +++ + G  +PN + ++++IN LC+ G  
Sbjct: 465 AMGLKPDTIVYNSLIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRV 524

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F+ + +      +  +P+ +T+ ++IDG    G ++KA  +   M    I PDV
Sbjct: 525 VEAQDIFDLVIH------IGERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDV 578

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY++L+ G+C     ++   L  EM+ +GV+P  +T+ +I+  L  +G+   A ++   
Sbjct: 579 VTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           MI  G   + ST   ++ G C     + A  LF  + +M  K  +
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKFNI 683



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 147/338 (43%), Gaps = 43/338 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IF  M   R   P   ++  +    ++       +  F ++ + GL PD   YN 
Sbjct: 419 DEAMLIFTQM-QERGVMPDAWTYGTVIAAFSRMGRLADAMDKFNQMIAMGLKPDTIVYNS 477

Query: 148 LINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--- 203
           LI  FC  G +     ++  ++ R    P+ V F S+I  LC E R++EA  +F  +   
Sbjct: 478 LIQGFCMHGNLVKAKELISEMMSRGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHI 537

Query: 204 -----------------------KAFGC---------KPNVITYSTLINGLCRTGHTIVA 231
                                  KAFG          +P+V+TYS L++G CR G     
Sbjct: 538 GERPDVITFNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDG 597

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           L LF EM +         KP T+TY  I+ GL  +G    AK++  +M +     D+ T 
Sbjct: 598 LILFREMLSKG------VKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGTTMDISTC 651

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
             ++ G C  N  +EA  L  ++    V+ ++   N ++D + K  K +EA+ L + +  
Sbjct: 652 GIILGGLCRNNCDDEAIALFKKLGAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISA 711

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            G+ PN ST+  ++      G V  A  +F  ME  GC
Sbjct: 712 TGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGC 749



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 126/278 (45%), Gaps = 7/278 (2%)

Query: 101 RPSPPPLTSF-NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           R  P P T F N +   L K         +F  +   G  PD+ T+N LI+ +  +G++ 
Sbjct: 501 RGIPRPNTVFFNSIINSLCKEGRVVEAQDIFDLVIHIGERPDVITFNSLIDGYGLVGKME 560

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
             F VL  ++     PD V +++L+ G C   RI +   LF ++ + G KP  ITY  ++
Sbjct: 561 KAFGVLDAMISVGIEPDVVTYSALLDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIIL 620

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +GL   G T+ A  +  EM        +       T   I+ GLC+    D+A  LF ++
Sbjct: 621 HGLFNDGRTVGAKKMCHEMIESGTTMDIS------TCGIILGGLCRNNCDDEAIALFKKL 674

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
              N+  ++   N++I          EAN L   +   G+ P+  T+ V++  L K G +
Sbjct: 675 GAMNVKFNIAIINTMIDAMYKVRKREEANELFDSISATGLVPNASTYGVMITNLLKEGSV 734

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +EA  +  LM   G  P++   + ++      G ++ A
Sbjct: 735 EEADNMFSLMEKSGCAPSSRLLNNIIRVLLEKGEISKA 772



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 126/285 (44%), Gaps = 7/285 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD ++++   P  +T FN L          +    +   + S G+ PD+ TY+ L
Sbjct: 526 EAQDIFDLVIHIGERPDVIT-FNSLIDGYGLVGKMEKAFGVLDAMISVGIEPDVVTYSAL 584

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C+ GR+  G ++   +L     P  + +  ++ GL  + R + A  +  ++   G 
Sbjct: 585 LDGYCRNGRIDDGLILFREMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGT 644

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ T   ++ GLCR      A+ LF+++   N KF      N     T+ID + K   
Sbjct: 645 TMDISTCGIILGGLCRNNCDDEAIALFKKLGAMNVKF------NIAIINTMIDAMYKVRK 698

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++A ELF  +    + P+  TY  +I          EA+ +   M   G  P     N 
Sbjct: 699 REEANELFDSISATGLVPNASTYGVMITNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNN 758

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           I+  L + G++ +A   L  +  + ++   ST S ++  F   G+
Sbjct: 759 IIRVLLEKGEISKAGNYLSKVDGKTISLEASTASLMLSLFSRKGK 803


>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
 gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
          Length = 649

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 170/317 (53%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A     A  + D M N +   P + +FN +   L K + +D    +F+ ++   + 
Sbjct: 206 GDVDA-----AIALVDSMAN-KGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVA 259

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ ++NILI  FC++G V         + +   TPD V+F+ LI       ++  AAA 
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++K  G  P+ + Y+ +I G CR G    AL + +EM       G+ C P+ VTY T+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMV------GLGCLPDVVTYNTL 373

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++GLCK+  +  A+EL  +MK++ + PD+ T+ +LIHG+C   ++ +A  L   ++ Q +
Sbjct: 374 LNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL 433

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PDVV +N ++D +C+ G + +A+ L + M  R + PN  T+S L+D  C  G+V  A  
Sbjct: 434 RPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFG 493

Query: 380 LFVSMESMGCKHTVFSY 396
               M S G    + +Y
Sbjct: 494 FLDEMVSKGNLPNIMTY 510



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 154/280 (55%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN+L G   +    +  +  +K +   G+ PD+ +++ LI  F   G++ H    
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD V +T +I G C    + EA  +  ++   GC P+V+TY+TL+NGLC+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCK 379

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  L  EM     + GV   P+  T+TT+I G C++G  +KA +LF  +  + +
Sbjct: 380 QHRLLDAEELLNEMK----ERGVT--PDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL 433

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV YNSLI G C   D  +AN L  +M  + + P+ VT+++++D  C+ G+++EA  
Sbjct: 434 RPDVVAYNSLIDGMCRKGDLAKANELWDDMHAREIFPNHVTYSILIDSHCEKGQVEEAFG 493

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            L+ M+ +G  PN  T+++++ G+C +G V   ++    M
Sbjct: 494 FLDEMVSKGNLPNIMTYNSIIKGYCRSGNVKKGQQFLQKM 533



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 150/302 (49%), Gaps = 9/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+ +    P + ++N L   L K         L   +   G+ PDL T+  
Sbjct: 349 SEALRVRDEMVGL-GCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +C+ G       +   +L     PD VA+ SLI G+C +  + +A  L+  + A  
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAYNSLIDGMCRKGDLAKANELWDDMHARE 467

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             PN +TYS LI+  C  G    A    +EM + GN        PN +TY +II G C+ 
Sbjct: 468 IFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGN-------LPNIMTYNSIIKGYCRS 520

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V K ++   +M   NI PD++T+N+LIHG+    + + A  +   M  + VQPD VT+
Sbjct: 521 GNVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTY 580

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+I++   + G M+EA R+ + M   G+ P+  T+ +L++G    G    A +L   M  
Sbjct: 581 NMIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTYMSLINGHVTAGNSKEAFQLHDEMMH 640

Query: 387 MG 388
            G
Sbjct: 641 RG 642



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 157/334 (47%), Gaps = 41/334 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + SF+ L G  +     D   +  + +   GL PD   Y ++I  FC+ G 
Sbjct: 288 MQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +S    V   ++     PD V + +L+ GLC + R+++A  L  ++K  G  P++ T++T
Sbjct: 348 MSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNEMKERGVTPDLCTFTT 407

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G CR G+   AL LF+ + +         +P+ V Y ++IDG+C++G + KA EL+ 
Sbjct: 408 LIHGYCRDGNFEKALQLFDTLLHQR------LRPDVVAYNSLIDGMCRKGDLAKANELWD 461

Query: 278 QMKDKNINPD-----------------------------------VVTYNSLIHGFCYAN 302
            M  + I P+                                   ++TYNS+I G+C + 
Sbjct: 462 DMHAREIFPNHVTYSILIDSHCEKGQVEEAFGFLDEMVSKGNLPNIMTYNSIIKGYCRSG 521

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +  +    L +MM   + PD++TFN ++    K   M  A  +  +M    V P+  T++
Sbjct: 522 NVKKGQQFLQKMMQDNILPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVQPDAVTYN 581

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++GF   G +  A  +F  M + G +   ++Y
Sbjct: 582 MIINGFSEQGNMEEAGRVFKKMGASGIEPDRYTY 615



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++     K+  +D   ++   +    +FPD+ T+N+LI+   + G V     ++  +
Sbjct: 159 TLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P  V F S++KGLC   R  +A  +F  +      P+V +++ LI G CR G  
Sbjct: 219 ANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+  ++EM     + GV   P+ V+++ +I      G +D A     +MK   + PD 
Sbjct: 279 EEAMKFYKEMQ----QRGVT--PDVVSFSCLIGLFSTRGKMDHAAAYLREMKGLGLVPDG 332

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  +I GFC A   +EA  +  EM+  G  PDVVT+N +++ LCK  ++ +A  LL  
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLCKQHRLLDAEELLNE 392

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL+ G+C  G    A +LF ++     +  V +Y
Sbjct: 393 MKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRLRPDVVAY 440



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 76/145 (52%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  T   ++   CK    DKA  +  +M+ + + PDVVT+N LI     A D + A  L+
Sbjct: 156 NAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALV 215

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M ++G++P +VTFN ++  LCK+ + D+A  +   M    V P+  +F+ L+ GFC  
Sbjct: 216 DSMANKGLKPGIVTFNSVLKGLCKHRRFDKAKEVFRAMDQCSVAPDVRSFNILIGGFCRV 275

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G V  A + +  M+  G    V S+
Sbjct: 276 GEVEEAMKFYKEMQQRGVTPDVVSF 300


>gi|4836917|gb|AAD30619.1|AC007153_11 similar to indole-3-acetate beta-glucosyltransferase [Arabidopsis
            thaliana]
          Length = 1184

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 29/321 (9%)

Query: 97   MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
            ++ ++   P + S++ +     +    D V  L + +   GL P+ Y Y  +I   C++ 
Sbjct: 714  LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 773

Query: 157  RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +++        ++R    PD V +T+LI G C    I  A+  F ++ +    P+V+TY+
Sbjct: 774  KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 833

Query: 217  TLINGLCRTGHTIVALNLFEEM---------------ANGNGKFGVV------------- 248
             +I+G C+ G  + A  LF EM                NG  K G +             
Sbjct: 834  AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 893

Query: 249  -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             C PN VTYTT+IDGLCKEG +D A EL  +M    + P++ TYNS+++G C + +  EA
Sbjct: 894  GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 953

Query: 308  NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
              L+ E    G+  D VT+  +MD  CK+G+MD+A  +L+ M+ +G+ P   TF+ LM+G
Sbjct: 954  VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNG 1013

Query: 368  FCLTGRVNHAKELFVSMESMG 388
            FCL G +   ++L   M + G
Sbjct: 1014 FCLHGMLEDGEKLLNWMLAKG 1034



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 152/272 (55%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           T + +F+     G+  ++ +YNI+I+  C++GR+     +L  +    +TPD +++++++
Sbjct: 672 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 731

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            G C    + +   L   +K  G KPN   Y ++I  LCR      A   F EM     +
Sbjct: 732 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI----R 787

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G++  P+TV YTT+IDG CK G +  A + F +M  ++I PDV+TY ++I GFC   D 
Sbjct: 788 QGIL--PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 845

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  L  EM  +G++PD VTF  +++  CK G M +A R+   MI  G +PN  T++TL
Sbjct: 846 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 905

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DG C  G ++ A EL   M  +G +  +F+Y
Sbjct: 906 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 937



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 150/260 (57%), Gaps = 6/260 (2%)

Query: 129  LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
             F  ++S  + PD+ TY  +I+ FC++G +     +   +      PD+V FT LI G C
Sbjct: 816  FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYC 875

Query: 189  AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
                + +A  +   +   GC PNV+TY+TLI+GLC+ G    A  L  EM      + + 
Sbjct: 876  KAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEM------WKIG 929

Query: 249  CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             +PN  TY +I++GLCK G +++A +L  + +   +N D VTY +L+  +C + + ++A 
Sbjct: 930  LQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQ 989

Query: 309  CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +L EM+ +G+QP +VTFNV+M+  C +G +++  +LL  M+ +G+ PN +TF++L+  +
Sbjct: 990  EILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNSLVKQY 1049

Query: 369  CLTGRVNHAKELFVSMESMG 388
            C+   +  A  ++  M S G
Sbjct: 1050 CIRNNLKAATAIYKDMCSRG 1069



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 162/318 (50%), Gaps = 12/318 (3%)

Query: 79   QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            +GDI A +       F Y ++ R   P + ++  +     +         LF  +   GL
Sbjct: 807  RGDIRAASK------FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 860

Query: 139  FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             PD  T+  LIN +CK G +   F V   ++++  +P+ V +T+LI GLC E  +  A  
Sbjct: 861  EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 920

Query: 199  LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            L  ++   G +PN+ TY++++NGLC++G+   A+ L  E              +TVTYTT
Sbjct: 921  LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG------LNADTVTYTT 974

Query: 259  IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            ++D  CK G +DKA+E+  +M  K + P +VT+N L++GFC      +   LL  M+ +G
Sbjct: 975  LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 1034

Query: 319  VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            + P+  TFN ++ + C    +  A+ + + M  RGV P+  T+  L+ G C    +  A 
Sbjct: 1035 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 1094

Query: 379  ELFVSMESMGCKHTVFSY 396
             LF  M+  G   +V +Y
Sbjct: 1095 FLFQEMKGKGFSVSVSTY 1112



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 163/319 (51%), Gaps = 29/319 (9%)

Query: 107  LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
            + S+N++   + +         L   +   G  PD+ +Y+ ++N +C+ G +   + ++ 
Sbjct: 689  VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 748

Query: 167  RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
             + R    P++  + S+I  LC   ++ EA   F+++   G  P+ + Y+TLI+G C+ G
Sbjct: 749  VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 808

Query: 227  HTIVALNLFEEMANGN------------------------GKF--GVVCK---PNTVTYT 257
                A   F EM + +                        GK    + CK   P++VT+T
Sbjct: 809  DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 868

Query: 258  TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
             +I+G CK G +  A  +   M     +P+VVTY +LI G C   D + AN LL EM   
Sbjct: 869  ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 928

Query: 318  GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            G+QP++ T+N I++ LCK+G ++EA +L+      G+N +T T++TLMD +C +G ++ A
Sbjct: 929  GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 988

Query: 378  KELFVSMESMGCKHTVFSY 396
            +E+   M   G + T+ ++
Sbjct: 989  QEILKEMLGKGLQPTIVTF 1007



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 15/305 (4%)

Query: 62   DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
            D  +  + +   CK+    D        AF + ++M+    SP  +T   L+ G L K  
Sbjct: 863  DSVTFTELINGYCKAGHMKD--------AFRVHNHMIQAGCSPNVVTYTTLIDG-LCKEG 913

Query: 122  HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
              D+   L   +   GL P+++TYN ++N  CK G +     ++G    +    D V +T
Sbjct: 914  DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 973

Query: 182  SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            +L+   C    + +A  +  ++   G +P ++T++ L+NG C  G     L   E++ N 
Sbjct: 974  TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG----MLEDGEKLLNW 1029

Query: 242  NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                G+   PN  T+ +++   C    +  A  ++  M  + + PD  TY +L+ G C A
Sbjct: 1030 MLAKGIA--PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 1087

Query: 302  NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             +  EA  L  EM  +G    V T++V++    K  K  EA  + + M   G+  +   F
Sbjct: 1088 RNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 1147

Query: 362  STLMD 366
                D
Sbjct: 1148 DFFSD 1152


>gi|334182313|ref|NP_172058.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|334182315|ref|NP_001154307.2| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|122236365|sp|Q0WVK7.1|PPR12_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g05670, mitochondrial; Flags: Precursor
 gi|110741796|dbj|BAE98841.1| hypothetical protein [Arabidopsis thaliana]
 gi|332189752|gb|AEE27873.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
 gi|332189753|gb|AEE27874.1| uncharacterized UDP-glucosyltransferase [Arabidopsis thaliana]
          Length = 741

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 164/321 (51%), Gaps = 29/321 (9%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++ ++   P + S++ +     +    D V  L + +   GL P+ Y Y  +I   C++ 
Sbjct: 271 LMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRIC 330

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +++        ++R    PD V +T+LI G C    I  A+  F ++ +    P+V+TY+
Sbjct: 331 KLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYT 390

Query: 217 TLINGLCRTGHTIVALNLFEEM---------------ANGNGKFGVV------------- 248
            +I+G C+ G  + A  LF EM                NG  K G +             
Sbjct: 391 AIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQA 450

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTYTT+IDGLCKEG +D A EL  +M    + P++ TYNS+++G C + +  EA
Sbjct: 451 GCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEA 510

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L+ E    G+  D VT+  +MD  CK+G+MD+A  +L+ M+ +G+ P   TF+ LM+G
Sbjct: 511 VKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNG 570

Query: 368 FCLTGRVNHAKELFVSMESMG 388
           FCL G +   ++L   M + G
Sbjct: 571 FCLHGMLEDGEKLLNWMLAKG 591



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 152/272 (55%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           T + +F+     G+  ++ +YNI+I+  C++GR+     +L  +    +TPD +++++++
Sbjct: 229 TAIIVFREFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVV 288

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            G C    + +   L   +K  G KPN   Y ++I  LCR      A   F EM     +
Sbjct: 289 NGYCRFGELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMI----R 344

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G++  P+TV YTT+IDG CK G +  A + F +M  ++I PDV+TY ++I GFC   D 
Sbjct: 345 QGIL--PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDM 402

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  L  EM  +G++PD VTF  +++  CK G M +A R+   MI  G +PN  T++TL
Sbjct: 403 VEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTL 462

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DG C  G ++ A EL   M  +G +  +F+Y
Sbjct: 463 IDGLCKEGDLDSANELLHEMWKIGLQPNIFTY 494



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 154/284 (54%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +  L     K          F  ++S  + PD+ TY  +I+ FC++G +     +
Sbjct: 349 PDTVVYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKL 408

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD+V FT LI G C    + +A  +   +   GC PNV+TY+TLI+GLC+
Sbjct: 409 FHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCK 468

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L  EM      + +  +PN  TY +I++GLCK G +++A +L  + +   +
Sbjct: 469 EGDLDSANELLHEM------WKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGL 522

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N D VTY +L+  +C + + ++A  +L EM+ +G+QP +VTFNV+M+  C +G +++  +
Sbjct: 523 NADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEK 582

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL  M+ +G+ PN +TF++L+  +C+   +  A  ++  M S G
Sbjct: 583 LLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRG 626



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 162/318 (50%), Gaps = 12/318 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GDI A +       F Y ++ R   P + ++  +     +         LF  +   GL
Sbjct: 364 RGDIRAASK------FFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGL 417

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD  T+  LIN +CK G +   F V   ++++  +P+ V +T+LI GLC E  +  A  
Sbjct: 418 EPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANE 477

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L  ++   G +PN+ TY++++NGLC++G+   A+ L  E              +TVTYTT
Sbjct: 478 LLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAG------LNADTVTYTT 531

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++D  CK G +DKA+E+  +M  K + P +VT+N L++GFC      +   LL  M+ +G
Sbjct: 532 LMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKG 591

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + P+  TFN ++ + C    +  A+ + + M  RGV P+  T+  L+ G C    +  A 
Sbjct: 592 IAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAW 651

Query: 379 ELFVSMESMGCKHTVFSY 396
            LF  M+  G   +V +Y
Sbjct: 652 FLFQEMKGKGFSVSVSTY 669



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/319 (28%), Positives = 163/319 (51%), Gaps = 29/319 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S+N++   + +         L   +   G  PD+ +Y+ ++N +C+ G +   + ++ 
Sbjct: 246 VASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFGELDKVWKLIE 305

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    P++  + S+I  LC   ++ EA   F+++   G  P+ + Y+TLI+G C+ G
Sbjct: 306 VMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGFCKRG 365

Query: 227 HTIVALNLFEEMANGN------------------------GKF--GVVCK---PNTVTYT 257
               A   F EM + +                        GK    + CK   P++VT+T
Sbjct: 366 DIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDSVTFT 425

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +I+G CK G +  A  +   M     +P+VVTY +LI G C   D + AN LL EM   
Sbjct: 426 ELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHEMWKI 485

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G+QP++ T+N I++ LCK+G ++EA +L+      G+N +T T++TLMD +C +G ++ A
Sbjct: 486 GLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGEMDKA 545

Query: 378 KELFVSMESMGCKHTVFSY 396
           +E+   M   G + T+ ++
Sbjct: 546 QEILKEMLGKGLQPTIVTF 564



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 15/305 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +  + +   CK+    D        AF + ++M+    SP  +T   L+ G L K  
Sbjct: 420 DSVTFTELINGYCKAGHMKD--------AFRVHNHMIQAGCSPNVVTYTTLIDG-LCKEG 470

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
             D+   L   +   GL P+++TYN ++N  CK G +     ++G    +    D V +T
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYT 530

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +L+   C    + +A  +  ++   G +P ++T++ L+NG C  G     L   E++ N 
Sbjct: 531 TLMDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHG----MLEDGEKLLNW 586

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
               G+   PN  T+ +++   C    +  A  ++  M  + + PD  TY +L+ G C A
Sbjct: 587 MLAKGIA--PNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKA 644

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            +  EA  L  EM  +G    V T++V++    K  K  EA  + + M   G+  +   F
Sbjct: 645 RNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIF 704

Query: 362 STLMD 366
               D
Sbjct: 705 DFFSD 709


>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g61400-like [Vitis vinifera]
          Length = 665

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 166/322 (51%), Gaps = 31/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N++   L K   +DT+  ++  + + G  P++ TY  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P  V +T LI+GLC ESRI EA ++F  ++  G  PN+ TY+T+++G C+
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 225 TGHTIVALNLFEEMANGNG------KFGV----VCK--------------------PNTV 254
             H   AL L++EM  G+G       FG+    +CK                    PN  
Sbjct: 276 IAHVKKALELYQEML-GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            Y  +IDG CK G + +A  L  +++   I PDV TY+ LI G C  +   EA+ LL EM
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +G  P+ VT+N ++D  CK G M++A  +   M  +G+ PN  TFSTL+DG+C  G++
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  L+  M   G    V +Y
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAY 476



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 170/334 (50%), Gaps = 35/334 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD       +AF +FD M+  +   P +  + +L   L          S+F+ + ++G+
Sbjct: 206 QGDFL-----KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+LYTYN +++ +CK+  V     +   +L     P+ V F  LI GLC    ++ A  
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE--------------------- 237
               + +FG  PN+  Y+ LI+G C+ G+   AL+L  E                     
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 238 ----MANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               M   +G    + K    PN VTY T+IDG CKEG ++KA E+  QM +K I P+++
Sbjct: 380 GVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNII 439

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+++LI G+C A     A  L  EM+ +G+ PDVV +  ++D   K+G   EA RL + M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
              G++PN  T S L+DG C  GR++ A +LF++
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 23/306 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F +L   L KT    +       + S G+ P+++ YN LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I +    PD   ++ LIKGLC   R+ EA  L  ++K  G  PN +TY+TLI+G C+
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+ +  +M           +PN +T++T+IDG CK G ++ A  L+ +M  K +
Sbjct: 416 EGNMEKAIEVCSQMTEKG------IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV Y +LI G     +  EA  L  EM + G+ P+V T + ++D LCK+G++ +A +
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 345 LLELMILRGVN---------------PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L   +   G +               PN   ++ L+ G C  GR+  A + F  M   G 
Sbjct: 530 LF--LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 390 KHTVFS 395
           +  VF+
Sbjct: 588 RPDVFT 593



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 154/340 (45%), Gaps = 51/340 (15%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLL-----FGCLA----KTKHYDTVLSLFKRLNSTGLF 139
           +  C  D M++ R     + SF ++     + CL     K  +    LSL   +    + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++TY+ILI   C + R+     +L  + +  F P+AV + +LI G C E  + +A  +
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-------------------- 239
            +++   G +PN+IT+STLI+G C+ G    A+ L+ EM                     
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485

Query: 240 NGNGKFG---------VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK---------- 280
           +GN K               PN  T + +IDGLCK+G +  A +LFL             
Sbjct: 486 DGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTN 545

Query: 281 --DKNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
             D+++ +P+ V Y +LI G C      +A+    +M   G++PDV T  VI+    +  
Sbjct: 546 ELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAM 605

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            + +   L   ++  G+ PN+S +  L  G+  +G +  A
Sbjct: 606 HLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSA 645



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 118/251 (47%), Gaps = 9/251 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     K  + +  + +  ++   G+ P++ T++ LI+ +CK G++     +
Sbjct: 401 PNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGL 460

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD VA+T+LI G   +    EA  L  +++  G  PNV T S LI+GLC+
Sbjct: 461 YTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCK 520

Query: 225 TGHTIVALNLFEEMANGNGKFGV--------VCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            G    A+ LF     G    G         +C PN V YT +I GLC +G + KA + F
Sbjct: 521 DGRISDAIKLFLA-KTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFF 579

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M+   + PDV T   +I G   A    +   L  +++  G+ P+   + V+     ++
Sbjct: 580 SDMRCSGLRPDVFTCIVIIQGHFRAMHLRDVMMLQADILKMGIIPNSSVYRVLAKGYEES 639

Query: 337 GKMDEASRLLE 347
           G +  A R  E
Sbjct: 640 GYLKSALRCSE 650


>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
 gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
          Length = 738

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/313 (32%), Positives = 164/313 (52%), Gaps = 29/313 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K       +   +R+ + G  PD +TYN +I+ +CK+  V     +
Sbjct: 256 PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEATEL 315

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   +   F PD V + SLI GLCAE  +  A  LF + +A G KP+++ Y++L+ GLC 
Sbjct: 316 LKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCL 375

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G  + AL +  EMA               NG  K G +                P+  T
Sbjct: 376 QGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVVMNDAIMKGYLPDVFT 435

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+IDG CK   +D A +L  +M +  I PD +TYNS+++G C A   NE N    EM+
Sbjct: 436 FNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMI 495

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G  P+ +T+N++++  C++ KM+EAS+++  M   G++P+  +F+TL+ GFC  G + 
Sbjct: 496 LKGCHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLE 555

Query: 376 HAKELFVSMESMG 388
            A  LF  +E  G
Sbjct: 556 GAYLLFQKLEEKG 568



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 167/309 (54%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD ML+    P  L +FN +   L K         L  ++   G+  +L+TYNI
Sbjct: 171 HDARQLFDQMLHTHVFPN-LAAFNKVLHALCKRGDVLEAGLLLGKVIQRGMSINLFTYNI 229

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   C+ GR+    V L   +R+   PD V + +LI+GLC +S   EA     ++   G
Sbjct: 230 WIRGLCEAGRLPEA-VRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQG 288

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+  TY+T+I+G C+      A  L ++        G V  P+ VTY ++I+GLC EG
Sbjct: 289 CLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK----GFV--PDQVTYCSLINGLCAEG 342

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ELF + + K I PD+V YNSL+ G C       A  ++ EM ++G  PD+ T+N
Sbjct: 343 DVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYN 402

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ LCK G + +A+ ++   I++G  P+  TF+TL+DG+C   +++ A +L   M   
Sbjct: 403 IVINGLCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEY 462

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 463 GIAPDTITY 471



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 177/390 (45%), Gaps = 57/390 (14%)

Query: 49  TAKLKESLRLT-------VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMR 101
             +L E++RL        V D  +    ++  CK S         P EA      M+N  
Sbjct: 237 AGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKS--------MPQEAMHYLRRMMNQG 288

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
             P   T +N +     K         L K     G  PD  TY  LIN  C  G V   
Sbjct: 289 CLPDDFT-YNTIIDGYCKISMVQEATELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERA 347

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +          PD V + SL+KGLC +  I+ A  +  ++   GC P++ TY+ +ING
Sbjct: 348 LELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVING 407

Query: 222 LCRTGH----TIV-------------------------------ALNLFEEMANGNGKFG 246
           LC+ G+    T+V                               AL L E M     ++G
Sbjct: 408 LCKMGNISDATVVMNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM----WEYG 463

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           +   P+T+TY ++++GLCK G V++  E F +M  K  +P+ +TYN LI  FC +N   E
Sbjct: 464 IA--PDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEE 521

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A+ ++++M  +G+ PD V+FN ++   C+NG ++ A  L + +  +G +    TF+TL+ 
Sbjct: 522 ASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIG 581

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            F     ++ A+++F  M S G +   ++Y
Sbjct: 582 AFSGKLNMHMAEKIFDEMLSKGHRADSYTY 611



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L         L +   +   G  PD+ TYNI+IN  CKMG +S   VV
Sbjct: 361 PDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGLCKMGNISDATVV 420

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +   +   + PD   F +LI G C   ++  A  L  ++  +G  P+ ITY++++NGLC+
Sbjct: 421 MNDAIMKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPDTITYNSVLNGLCK 480

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G        F+EM          C PN +TY  +I+  C+   +++A ++ ++M  + +
Sbjct: 481 AGKVNEVNETFQEMILKG------CHPNPITYNILIENFCRSNKMEEASKVIVKMSQEGL 534

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD V++N+LI+GFC   D   A  L  ++ ++G      TFN ++        M  A +
Sbjct: 535 HPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKGYSATADTFNTLIGAFSGKLNMHMAEK 594

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + + M+ +G   ++ T+  L+DG C T  V+ A    V M   G
Sbjct: 595 IFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEMIKKG 638



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 146/293 (49%), Gaps = 11/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   L    ++D    ++ R+ + G+ PDL+T+ I +  FC   R      
Sbjct: 85  PPAAPAYNAIMDALVDAAYHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPH---- 140

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+LR+     AVA+ +++ GL A     +A  LF ++      PN+  ++ +++ LC
Sbjct: 141 IALRLLRALPHRGAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALC 200

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A  L  ++             N  TY   I GLC+ G + +A  L   M+   
Sbjct: 201 KRGDVLEAGLLLGKVIQRGMSI------NLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYA 254

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVTYN+LI G C  +   EA   L  MM+QG  PD  T+N I+D  CK   + EA+
Sbjct: 255 V-PDVVTYNTLIRGLCKKSMPQEAMHYLRRMMNQGCLPDDFTYNTIIDGYCKISMVQEAT 313

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+  + +G  P+  T+ +L++G C  G V  A ELF   ++ G K  +  Y
Sbjct: 314 ELLKDAVFKGFVPDQVTYCSLINGLCAEGDVERALELFNEAQAKGIKPDIVVY 366



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 17/286 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CK     D T +  N+A         M+   P + +FN L     K    D+ L L +R+
Sbjct: 409 CKMGNISDATVVM-NDAI--------MKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERM 459

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR-ILRSCFTPDAVAFTSLIKGLCAESR 192
              G+ PD  TYN ++N  CK G+V+         IL+ C  P+ + +  LI+  C  ++
Sbjct: 460 WEYGIAPDTITYNSVLNGLCKAGKVNEVNETFQEMILKGCH-PNPITYNILIENFCRSNK 518

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + EA+ +  K+   G  P+ ++++TLI G CR G    A  LF+++              
Sbjct: 519 MEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEEKG------YSAT 572

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
             T+ T+I     +  +  A+++F +M  K    D  TY  LI G C   + + A   L+
Sbjct: 573 ADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLV 632

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           EM+ +G  P + TF  +++ L  N ++ +A  ++ +M+  GV P  
Sbjct: 633 EMIKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEV 678



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 124/265 (46%), Gaps = 14/265 (5%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           RL+   + P LY  +I    + + GR+        R+      P A A+ +++  L   +
Sbjct: 46  RLSPATIHP-LYVASI--RAYARAGRLRDAVDAFERMDLFACPPAAPAYNAIMDALVDAA 102

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
              +A  ++ ++ A G  P++ T++  +   C T    +AL L   + +           
Sbjct: 103 YHDQAHKVYVRMLAAGVSPDLHTHTIRLRSFCLTARPHIALRLLRALPH----------R 152

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
             V Y T++ GL   G    A++LF QM   ++ P++  +N ++H  C   D  EA  LL
Sbjct: 153 GAVAYCTVVCGLYAHGHTHDARQLFDQMLHTHVFPNLAAFNKVLHALCKRGDVLEAGLLL 212

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +++ +G+  ++ T+N+ +  LC+ G++ EA RL++ M    V P+  T++TL+ G C  
Sbjct: 213 GKVIQRGMSINLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAV-PDVVTYNTLIRGLCKK 271

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
                A      M + GC    F+Y
Sbjct: 272 SMPQEAMHYLRRMMNQGCLPDDFTY 296



 Score = 51.6 bits (122), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN L G  +   +      +F  + S G   D YTY +LI+  CK   V   ++ L  +
Sbjct: 575 TFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTANVDRAYMHLVEM 634

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           ++  F P    F  +I  L    R+ +A  +   +   G  P V+   T++N 
Sbjct: 635 IKKGFIPSMSTFGRVINSLTVNHRVFQAVGIIHIMVKIGVVPEVV--DTILNA 685


>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
 gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
          Length = 564

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 155/291 (53%), Gaps = 7/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           +  +N++   L +       L +F+  +   G+ P + TYN +IN  CK   +  G  + 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             ++     PD V + +LI  LC    + EA  L   + + GC PNV+TYS LINGLC+ 
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKV 120

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-- 283
           G    A  L +EM   +        PN +TY + +DGLCK+    +A EL   ++D +  
Sbjct: 121 GRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLR 176

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD VT+++LI G C     +EA  +  +M+  G  P+V+T+N +++ LCK  KM+ A 
Sbjct: 177 VSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAH 236

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            ++E M+ +GV P+  T+S L+D FC   RV+ A EL   M S GC   V 
Sbjct: 237 AMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVL 287



 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 165/314 (52%), Gaps = 11/314 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  IF   +      P + ++N +   L K+      + LF+ L   G  PD+ TYN LI
Sbjct: 20  ALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELFEELVERGHHPDVVTYNTLI 79

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +     + G +      P+ V ++ LI GLC   RI EA  L  ++    C 
Sbjct: 80  DSLCKAGDLEEARRLHGDMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQEMTRKSCD 139

Query: 210 --PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ITY++ ++GLC+   T  A  L   + +G+ +      P+TVT++T+IDGLCK G
Sbjct: 140 VLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRV----SPDTVTFSTLIDGLCKCG 195

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  +F  M      P+V+TYN+L++G C A+    A+ ++  M+D+GV PDV+T++
Sbjct: 196 QIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 255

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNT-----STFSTLMDGFCLTGRVNHAKELFV 382
           V++D  CK  ++DEA  LL  M  RG  PN       TF+ L+ G C  G    A  LF 
Sbjct: 256 VLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFE 315

Query: 383 SMESMGCKHTVFSY 396
            M +   +  V ++
Sbjct: 316 EMVAKNLQPDVMTF 329



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 161/303 (53%), Gaps = 12/303 (3%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           ++R SP  +T F+ L   L K    D   S+F  + + G  P++ TYN L+N  CK  ++
Sbjct: 174 SLRVSPDTVT-FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKM 232

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV-----I 213
                ++  ++    TPD + ++ L+   C  SR+ EA  L   + + GC PNV     +
Sbjct: 233 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKV 292

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++ LI G C+ G+   A  LFEEM   N       +P+ +T+  +IDGLCK G V+ A+
Sbjct: 293 TFNILIAGACKAGNFEQASALFEEMVAKN------LQPDVMTFGALIDGLCKAGQVEAAR 346

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           ++   M +  + P+VVTYN+L+HG C +    EA   L EM+  G  PD +T+  ++  L
Sbjct: 347 DILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYAL 406

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C+  + D+A +L+  +   G +P+T T++ L+DG   +G+   A  +   M   G +   
Sbjct: 407 CRASRTDDALQLVSELKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDS 466

Query: 394 FSY 396
           F++
Sbjct: 467 FTF 469



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 99/299 (33%), Positives = 159/299 (53%), Gaps = 12/299 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M+     P  +T +N L   L K    +   ++ + +   G+ PD+ TY++
Sbjct: 198 DEACSVFDDMIAGGYVPNVIT-YNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSV 256

Query: 148 LINCFCKMGRVSHGFVVL-GRILRSC----FTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           L++ FCK  RV     +L G   R C      PD V F  LI G C      +A+ALF +
Sbjct: 257 LVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEE 316

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           + A   +P+V+T+  LI+GLC+ G    A ++ + M N     GV   PN VTY  ++ G
Sbjct: 317 MVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGN----LGV--PPNVVTYNALVHG 370

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G +++A +   +M      PD +TY SL++  C A+  ++A  L+ E+   G  PD
Sbjct: 371 LCKSGRIEEACQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPD 430

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            VT+N+++D L K+GK ++A  +LE M+ +G  P++ TF+    G   +G +    EL 
Sbjct: 431 TVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNLAGTMELL 489



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 150/294 (51%), Gaps = 3/294 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGF 162
           P + ++N     L K         L + L    L   PD  T++ LI+  CK G++    
Sbjct: 142 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEAC 201

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   ++   + P+ + + +L+ GLC   ++  A A+   +   G  P+VITYS L++  
Sbjct: 202 SVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 261

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+      AL L   MA+  G    V  P+ VT+  +I G CK G  ++A  LF +M  K
Sbjct: 262 CKASRVDEALELLHGMAS-RGCTPNVLVPDKVTFNILIAGACKAGNFEQASALFEEMVAK 320

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N+ PDV+T+ +LI G C A     A  +L  M + GV P+VVT+N ++  LCK+G+++EA
Sbjct: 321 NLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEA 380

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + LE M+  G  P++ T+ +L+   C   R + A +L   ++S G      +Y
Sbjct: 381 CQFLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSELKSFGWDPDTVTY 434



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 11/286 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-----LFPDLYTYNILINCFCKMGRVS 159
           P + ++++L     K    D  L L   + S G     L PD  T+NILI   CK G   
Sbjct: 249 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVLVPDKVTFNILIAGACKAGNFE 308

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +   ++     PD + F +LI GLC   ++  A  +   +   G  PNV+TY+ L+
Sbjct: 309 QASALFEEMVAKNLQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALV 368

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +GLC++G    A    EEM +        C P+++TY +++  LC+    D A +L  ++
Sbjct: 369 HGLCKSGRIEEACQFLEEMVSSG------CVPDSITYGSLVYALCRASRTDDALQLVSEL 422

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           K    +PD VTYN L+ G   +    +A  +L EM+ +G QPD  TF      L ++G +
Sbjct: 423 KSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFSGLHRSGNL 482

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
                LL +++ +G+ P+ +T S+++D  C +G+++  K +    E
Sbjct: 483 AGTMELLRVVLAKGMLPDATTCSSILDWVCRSGKLDDVKAMIKEFE 528



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/110 (34%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 288 VVTYNSLIHGFCYANDWNEA-NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           V  YN ++   C A D   A      EM   GV P +VT+N I++ LCK+  +     L 
Sbjct: 1   VADYNIVLQSLCRAGDTARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNDLGAGMELF 60

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E ++ RG +P+  T++TL+D  C  G +  A+ L   M S GC   V +Y
Sbjct: 61  EELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNVVTY 110


>gi|302794530|ref|XP_002979029.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
 gi|300153347|gb|EFJ19986.1| hypothetical protein SELMODRAFT_109908 [Selaginella moellendorffii]
          Length = 500

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/298 (35%), Positives = 157/298 (52%), Gaps = 8/298 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +FD M+     P  L  + L+ G     K  D     FK++   G  P++  YN+
Sbjct: 132 DHASSLFDEMIRGGHHPDRLMFYELILGLCQAGKVKDAS-ERFKQMPKHGCQPNVPVYNV 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C  G++     +   +     +PD V + +L+  +C   R+ E   LF  ++A G
Sbjct: 191 LLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAG 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNVIT+STLI+GLCRTG    AL +F  M          CKPN  TYTT+I GLC+  
Sbjct: 251 YVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAG------CKPNKYTYTTLISGLCRAE 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTF 326
            V +A+ELF +M    I PD V YNSLI G+C     +EA  L  EM    G+QP +VTF
Sbjct: 305 KVIQARELFEKMTQACIPPDAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTF 364

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           N ++D  CK GK+  A+ L+  M  +G+  ++ T+  L+ G     +++ A E++  M
Sbjct: 365 NTLIDGFCKLGKLGRANELVAEMGTKGLAADSCTYRILIAGLSRATKLDEALEVYKQM 422



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 156/302 (51%), Gaps = 8/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E+  I   M+ MR   P + +++ L   LAK +  D   SLF  +   G  PD   +  
Sbjct: 97  DESLKILSEMV-MRGQTPSMQAYSSLVRALAKARRVDHASSLFDEMIRGGHHPDRLMFYE 155

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C+ G+V        ++ +    P+   +  L+ GLC+  ++ +A  LF ++K+  
Sbjct: 156 LILGLCQAGKVKDASERFKQMPKHGCQPNVPVYNVLLHGLCSSGQLEQANTLFAEMKSHS 215

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+TL++ +C+         LFE M       G V  PN +T++T+I GLC+ G
Sbjct: 216 CSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAA----GYV--PNVITFSTLIHGLCRTG 269

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++KA E+F  M +    P+  TY +LI G C A    +A  L  +M    + PD V +N
Sbjct: 270 ELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYN 329

Query: 328 VIMDELCKNGKMDEASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++   CK G MDEA +L  E+    G+ P   TF+TL+DGFC  G++  A EL   M +
Sbjct: 330 SLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT 389

Query: 387 MG 388
            G
Sbjct: 390 KG 391



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 161/303 (53%), Gaps = 7/303 (2%)

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           +    P E++ + + M+    +P  + +FN +    A++ + +    +++ +  +G  PD
Sbjct: 21  VKEAKPEESYKVLEEMMAAGCNPD-VFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 79

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
             +Y+ILI+   K+G++     +L  ++    TP   A++SL++ L    R+  A++LF 
Sbjct: 80  NVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRVDHASSLFD 139

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G  P+ + +  LI GLC+ G    A   F++M     K G  C+PN   Y  ++ 
Sbjct: 140 EMIRGGHHPDRLMFYELILGLCQAGKVKDASERFKQMP----KHG--CQPNVPVYNVLLH 193

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC  G +++A  LF +MK  + +PDVVTYN+L+   C A    E   L   M   G  P
Sbjct: 194 GLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVP 253

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +V+TF+ ++  LC+ G++++A  +   M+  G  PN  T++TL+ G C   +V  A+ELF
Sbjct: 254 NVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELF 313

Query: 382 VSM 384
             M
Sbjct: 314 EKM 316



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ +   L K    +    + + + + G  PD++ +N ++  F +   +     V   +
Sbjct: 12  TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 71

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           + S + PD V++  LI GL    ++ E+  + +++   G  P++  YS+L+  L +    
Sbjct: 72  VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKARRV 131

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A +LF+EM  G         P+ + +  +I GLC+ G V  A E F QM      P+V
Sbjct: 132 DHASSLFDEMIRGGHH------PDRLMFYELILGLCQAGKVKDASERFKQMPKHGCQPNV 185

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN L+HG C +    +AN L  EM      PDVVT+N ++D +CK  +++E  +L E 
Sbjct: 186 PVYNVLLHGLCSSGQLEQANTLFAEMKSHSCSPDVVTYNTLLDAVCKARRVEEGCKLFEA 245

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G  PN  TFSTL+ G C TG +  A E+F SM   GCK   ++Y
Sbjct: 246 MRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPNKYTY 293



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 138/277 (49%), Gaps = 5/277 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   + K +  +    LF+ + + G  P++ T++ LI+  C+ G +     V
Sbjct: 218 PDVVTYNTLLDAVCKARRVEEGCKLFEAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 277

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +L +   P+   +T+LI GLC   ++++A  LF K+      P+ + Y++LI G C+
Sbjct: 278 FGSMLEAGCKPNKYTYTTLISGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGYCK 337

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L+ EM+ G G      +P  VT+ T+IDG CK G + +A EL  +M  K +
Sbjct: 338 RGSMDEAEKLYREMSGGAG-----LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTKGL 392

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D  TY  LI G   A   +EA  +  +M ++    D V+    +  LCK G +D+A  
Sbjct: 393 AADSCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQAYA 452

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           + E     G  PN  TF  L +     GRV  A++L 
Sbjct: 453 VFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 489



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 78/133 (58%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  TY++II  L KE   +++ ++  +M     NPDV  +N ++ GF  +N+  +A  + 
Sbjct: 9   NVFTYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVY 68

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M++ G +PD V++++++  L K GK+DE+ ++L  M++RG  P+   +S+L+      
Sbjct: 69  QHMVESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMVMRGQTPSMQAYSSLVRALAKA 128

Query: 372 GRVNHAKELFVSM 384
            RV+HA  LF  M
Sbjct: 129 RRVDHASSLFDEM 141


>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
 gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
          Length = 581

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 160/300 (53%), Gaps = 9/300 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRV 158
           +R S   +  +N++   L +       L +F+  +   G+ P + TYN +IN  CK   +
Sbjct: 38  VRSSSRSVADYNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNEL 97

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
             G  +   +++    PD V + +LI  LC    + EA  L   + + GC PNV+TYS L
Sbjct: 98  GAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVL 157

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           INGLC+ G    A  L +EM   +        PN +TY + +DGLCK+    +A EL   
Sbjct: 158 INGLCKVGRIDEARELIQEMTRKSCDV----LPNIITYNSFLDGLCKQSMTAEACELMRS 213

Query: 279 MKDKN--INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           ++D +  ++PD VT+++LI G C     +EA     +M+  G  P+VVT+N +++ LCK 
Sbjct: 214 LRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA--CNDDMIAGGYVPNVVTYNALVNGLCKA 271

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            KM+ A  ++E M+ +GV P+  T+S L+D FC   RV+ A EL   M S GC   V ++
Sbjct: 272 DKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTF 331



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 152/294 (51%), Gaps = 10/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSHGF 162
           P + ++N     L K         L + L    L   PD  T++ LI+  CK G+     
Sbjct: 186 PNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEA- 244

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                ++   + P+ V + +L+ GLC   ++  A A+   +   G  P+VITYS L++  
Sbjct: 245 -CNDDMIAGGYVPNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAF 303

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+      AL L   MA+        C PN VT+ +IIDGLCK     +A ++ LQ+ ++
Sbjct: 304 CKASRVDEALELLHGMASRG------CTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNR 357

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD VT+N LI G C A ++ +A+ L  EM+ + +QPDV+TF  ++D LCK G+++ A
Sbjct: 358 MLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAA 417

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +L+LM   GV PN  T++ L+ G C +GR+    E    M S GC     +Y
Sbjct: 418 RDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTY 471



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/302 (31%), Positives = 159/302 (52%), Gaps = 17/302 (5%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           ++R SP  +T F+ L   L K    D   +    + + G  P++ TYN L+N  CK  ++
Sbjct: 218 SLRVSPDTVT-FSTLIDGLCKCGQTDEACN--DDMIAGGYVPNVVTYNALVNGLCKADKM 274

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                ++  ++    TPD + ++ L+   C  SR+ EA  L   + + GC PNV+T++++
Sbjct: 275 ERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSI 334

Query: 219 INGLC---RTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           I+GLC   R+G    +AL ++  M            P+ VT+  +I G CK G  ++A  
Sbjct: 335 IDGLCKSDRSGEAFQIALQVYNRML----------VPDKVTFNILIAGACKAGNFEQASA 384

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF +M  KN+ PDV+T+ +LI G C A     A  +L  M + GV P+VVT+NV++  LC
Sbjct: 385 LFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLC 444

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+G+++E    LE M+  G  P + T+ +L+   C   R + A +L   ++S G      
Sbjct: 445 KSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTV 504

Query: 395 SY 396
           +Y
Sbjct: 505 TY 506



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/277 (31%), Positives = 145/277 (52%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L     K    D  L L   + S G  P++ T+N +I+  CK  R    F +
Sbjct: 291 PDVITYSVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQI 350

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      PD V F  LI G C      +A+ALF ++ A   +P+V+T+  LI+GLC+
Sbjct: 351 ALQVYNRMLVPDKVTFNILIAGACKAGNFEQASALFEEMVAKNMQPDVMTFGALIDGLCK 410

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A ++ + M N     GV   PN VTY  ++ GLCK G +++  E   +M     
Sbjct: 411 AGQVEAARDILDLMGN----LGV--PPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGC 464

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TY SL++  C A+  ++A  L+ ++   G  PD VT+N+++D L K+GK ++A  
Sbjct: 465 VPESMTYGSLVYALCRASRTDDALQLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAIT 524

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +LE M+ +G  P++ TF+    G   +G +    EL 
Sbjct: 525 VLEEMVGKGHQPDSFTFAACFGGLHRSGNLAGTMELL 561



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 155/293 (52%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K    +   ++ + +   G+ PD+ TY++L++ FCK  RV     +
Sbjct: 256 PNVVTYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALEL 315

Query: 165 L-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L G   R C TP+ V F S+I GLC   R  EA  +  ++      P+ +T++ LI G C
Sbjct: 316 LHGMASRGC-TPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGAC 374

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+   A  LFEEM   N       +P+ +T+  +IDGLCK G V+ A+++   M +  
Sbjct: 375 KAGNFEQASALFEEMVAKN------MQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLG 428

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+VVTYN L+HG C +    E    L EM+  G  P+ +T+  ++  LC+  + D+A 
Sbjct: 429 VPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYGSLVYALCRASRTDDAL 488

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+  +   G +P+T T++ L+DG   +G+   A  +   M   G +   F++
Sbjct: 489 QLVSKLKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTF 541



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 131/266 (49%), Gaps = 6/266 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN +   L K+        +  ++ +  L PD  T+NILI   CK G    
Sbjct: 322 RGCTPNVVTFNSIIDGLCKSDRSGEAFQIALQVYNRMLVPDKVTFNILIAGACKAGNFEQ 381

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   ++     PD + F +LI GLC   ++  A  +   +   G  PNV+TY+ L++
Sbjct: 382 ASALFEEMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVH 441

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC++G         EEM +        C P ++TY +++  LC+    D A +L  ++K
Sbjct: 442 GLCKSGRIEEPCEFLEEMVSSG------CVPESMTYGSLVYALCRASRTDDALQLVSKLK 495

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
               +PD VTYN L+ G   +    +A  +L EM+ +G QPD  TF      L ++G + 
Sbjct: 496 SFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMVGKGHQPDSFTFAACFGGLHRSGNLA 555

Query: 341 EASRLLELMILRGVNPNTSTFSTLMD 366
               LL +++ +G+ P+ +T S+++D
Sbjct: 556 GTMELLRVVLAKGMLPDATTCSSILD 581


>gi|22128708|gb|AAM92820.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432840|gb|AAP54427.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
          Length = 517

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 161/292 (55%), Gaps = 8/292 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVL 165
           SFN     +A+      V SLF R+   G   + PDL TY+ILI C C+ GR+  GF  L
Sbjct: 197 SFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCRAGRLDLGFAAL 255

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCR 224
           G +++  F  +A+ F  L+KGLCA+ R  +A  +   ++    C P+V + + L+ GLC 
Sbjct: 256 GNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCD 315

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  AL L   MA+  G       P+ V+YTT+I+G  KEG  DKA   + +M D+ I
Sbjct: 316 ENRSQEALELLHMMADDRGGG---SPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRI 372

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+VVTY+S+I   C A   ++A  +L  M+  GV PD +T+N I+   C +G+  EA  
Sbjct: 373 SPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIG 432

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+ M   GV PN  T+ +LM+  C  GR   A+++F SM   G +  + +Y
Sbjct: 433 TLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATY 484



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 26/113 (23%), Positives = 56/113 (49%), Gaps = 1/113 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + + M+     P  +T  ++L G  +  +  + + +L K++ S G+ P++ TY  
Sbjct: 393 DKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTL-KKMRSDGVEPNVVTYRS 451

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           L+N  CK GR +    +   + +    PD   + +L++G   +  ++E  AL 
Sbjct: 452 LMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALL 504


>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
 gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
          Length = 1636

 Score =  189 bits (479), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 164/294 (55%), Gaps = 7/294 (2%)

Query: 104  PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGF 162
            P  +   N++   L   +  D+ L LFK +  +G  P D++TY+ +++   K G+V    
Sbjct: 909  PQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDAC 968

Query: 163  VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             ++  ++    +P+ V ++SL+ GLC   ++ EA AL  ++   GC PN++TY+T+I+G 
Sbjct: 969  RLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGH 1028

Query: 223  CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            C+ G    A +L EEM +G       C+PN VTYT ++D  CK G  + A  L   M +K
Sbjct: 1029 CKLGRIDEAYHLLEEMVDGG------CQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK 1082

Query: 283  NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
               P++ TYNSL+  FC  ++   A  LL  M+ +G  P+VV++N ++  LCK  K+ E 
Sbjct: 1083 GYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEG 1142

Query: 343  SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              LLE M+     P+  TF+T++D  C T RV+ A ELF  ++  GC   + +Y
Sbjct: 1143 VLLLEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTY 1196



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 168/310 (54%), Gaps = 9/310 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            + A   FD+  +         + N L   L + K     L +++  N     P+++T+ I
Sbjct: 825  DAALGFFDWATSQEGYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTI 882

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            LI+  C+ G +   + +L  + R     + +    +IKGLC+  ++  A  LF +++  G
Sbjct: 883  LIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESG 942

Query: 208  -CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             C P+V TYST+++ L ++G    A  L E+M +        C PN VTY++++ GLCK 
Sbjct: 943  SCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKG------CSPNVVTYSSLLHGLCKA 996

Query: 267  GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            G +D+A  L  +M     +P++VTYN++I G C     +EA  LL EM+D G QP+VVT+
Sbjct: 997  GKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTY 1056

Query: 327  NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             V++D  CK GK ++A  L+E+M+ +G  PN  T+++L+D FC    V  A +L  SM  
Sbjct: 1057 TVLLDAFCKCGKAEDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQ 1116

Query: 387  MGCKHTVFSY 396
             GC   V SY
Sbjct: 1117 KGCVPNVVSY 1126



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 153/292 (52%), Gaps = 5/292 (1%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P L ++N L     K    +    L   +   G  P++ +YN +I   CK  +V  G ++
Sbjct: 1086 PNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLL 1145

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L ++L +   PD V F ++I  +C   R+  A  LF  ++  GC PN++TY++L++GLC+
Sbjct: 1146 LEQMLSNNCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCK 1205

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            +     A  L  EM    G     C P+ +TY T+IDGLCK   VD+A +LFLQM    +
Sbjct: 1206 SRRFDQAEYLLREMTRKQG-----CSPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGL 1260

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             PD VTY+ +I   C     +EAN +L  M+  G  P  +T+  ++D  CK G +D+A  
Sbjct: 1261 APDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFCKTGNLDKALE 1320

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L+L++ +G  P+  TFS  +D     GR+  A EL  +M   G      +Y
Sbjct: 1321 ILQLLLSKGSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTY 1372



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 160/307 (52%), Gaps = 8/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ +FD M             ++L G     +  D VL  F+ ++ T   PD  TYN +I
Sbjct: 180 AYELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLH-FREMSKT-CPPDSVTYNTMI 237

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N   K  R+     +L  ++ + F P+  ++ +++ G C  +R+  A  L  ++   GC 
Sbjct: 238 NGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVTRGCP 297

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V++Y+T+INGLC+      A  + ++M          C+PN +TY T++DG C+ G +
Sbjct: 298 PDVVSYTTVINGLCKLDQVDEACRVMDKMIQRG------CQPNVITYGTLVDGFCRVGDL 351

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A EL  +M ++   P+ +TYN+++H FC  ND   A+ +L  M+  G  PD + ++ I
Sbjct: 352 DGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTI 411

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   CK GK+ EA  LLE MI RG  P+ +  STL+D  C    ++ A+EL      M C
Sbjct: 412 ISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDC 471

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 472 APDVVAY 478



 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 103/319 (32%), Positives = 167/319 (52%), Gaps = 7/319 (2%)

Query: 79   QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            +G  +A   + A  +F  M      PP + +++ +   L K+   D    L + + S G 
Sbjct: 920  KGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGC 979

Query: 139  FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             P++ TY+ L++  CK G++     +L R+ RS  +P+ V + ++I G C   RI EA  
Sbjct: 980  SPNVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLGRIDEAYH 1039

Query: 199  LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            L  ++   GC+PNV+TY+ L++  C+ G    A+ L E M       G V  PN  TY +
Sbjct: 1040 LLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMVEK----GYV--PNLFTYNS 1093

Query: 259  IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            ++D  CK+  V++A +L   M  K   P+VV+YN++I G C A   +E   LL +M+   
Sbjct: 1094 LLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSNN 1153

Query: 319  VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
              PD+VTFN I+D +CK  ++D A  L  L+   G  PN  T+++L+ G C + R + A+
Sbjct: 1154 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 1213

Query: 379  ELFVSM-ESMGCKHTVFSY 396
             L   M    GC   + +Y
Sbjct: 1214 YLLREMTRKQGCSPDIITY 1232



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 151/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   L+K+   D  + L + +   G  P++++YN +++ FCK  RV +   
Sbjct: 227 PPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALW 286

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L +++     PD V++T++I GLC   ++ EA  +  K+   GC+PNVITY TL++G C
Sbjct: 287 LLEQMVTRGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFC 346

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G    A+ L  +M           +PN +TY  I+   C+   +++A ++   M    
Sbjct: 347 RVGDLDGAVELVRKMTERG------YRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTG 400

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD + Y+++I GFC A    EA+ LL +M+ +G +PDV   + ++D LCK   +D A 
Sbjct: 401 CPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQ 460

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL + I     P+   +S L+   C   R+  A+     M    C   V +Y
Sbjct: 461 ELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTY 513



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 163/338 (48%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+  R   P + ++  L     +    D  + L +++   G  P+  TYN 
Sbjct: 317 DEACRVMDKMIQ-RGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNN 375

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ FC+   +     VL  ++++   PDA+ ++++I G C   ++ EA  L  ++   G
Sbjct: 376 IMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHDLLEQMIRRG 435

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLF-------------------------EEMANGN 242
           C+P+V   STLI+ LC+      A  L                          + +    
Sbjct: 436 CRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAE 495

Query: 243 GKFGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
               V+    C P+ VTY +++DGLCK   ++ A  LF +M+   + PDVVTY+ +IH F
Sbjct: 496 SWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSF 555

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  N+ + A  +L  M +    PDVVT++ +++ LCK G +D+A  + + M+  G  PN 
Sbjct: 556 CKDNNLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNL 615

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++TL+DG C   +V  A E+   M    C     +Y
Sbjct: 616 VTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITY 653



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 152/298 (51%), Gaps = 7/298 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+  R   P +   + L   L K    D+   L +        PD+  Y+IL
Sbjct: 423 EAHDLLEQMIR-RGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSIL 481

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK  R+      L  ++++   PD V + S++ GLC   RI +A  LF +++A G 
Sbjct: 482 IHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGV 541

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TYS +I+  C+  +   A  + E M          C P+ VTY+ +I+GLCK G 
Sbjct: 542 MPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK------CVPDVVTYSALINGLCKAGT 595

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VDKA ++F +M      P++VTYN+LI G C  N   +A  +L  M  Q   PD +T+  
Sbjct: 596 VDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCTPDSITYTC 655

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +++ LC   +++EA R+L  M  +G  P+  T+ TL+     T  +   ++L   ME+
Sbjct: 656 LINGLCNASRLEEAWRVLREMKDKGCLPDRMTYGTLLRALQKTNNLELVEQLLKEMEA 713



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 152/307 (49%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + + M+  R  PP + S+  +   L K    D    +  ++   G  P++ TY  L+
Sbjct: 284 ALWLLEQMVT-RGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLV 342

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FC++G +     ++ ++    + P+A+ + +++   C  + +  A  +   +   GC 
Sbjct: 343 DGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCP 402

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ I YST+I+G C+ G    A +L E+M          C+P+    +T+ID LCK   +
Sbjct: 403 PDAINYSTIISGFCKAGKLREAHDLLEQMIRRG------CRPDVACLSTLIDALCKAAAI 456

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A+EL       +  PDVV Y+ LIH  C A    EA   L  M+     PDVVT+N +
Sbjct: 457 DSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSV 516

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCK+ ++++A  L + M   GV P+  T+S ++  FC    ++ A ++   M+   C
Sbjct: 517 VDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKC 576

Query: 390 KHTVFSY 396
              V +Y
Sbjct: 577 VPDVVTY 583



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 138/260 (53%), Gaps = 7/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G   +++  N L+N   K  + S    +    +   +  D V +++LI G     +I+ A
Sbjct: 121 GYQHEIFCCNCLLNVLVKAHQYSQAHDLFRSRIEGQWGGDTVTYSTLISGFIRAGKILPA 180

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             LF ++   G K +   + +++ GLC  G    A+  F EM+         C P++VTY
Sbjct: 181 YELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSK-------TCPPDSVTY 233

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            T+I+GL K   +D A  L  +M D    P+V +YN+++HGFC AN    A  LL +M+ 
Sbjct: 234 NTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVT 293

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  PDVV++  +++ LCK  ++DEA R+++ MI RG  PN  T+ TL+DGFC  G ++ 
Sbjct: 294 RGCPPDVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDG 353

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A EL   M   G +    +Y
Sbjct: 354 AVELVRKMTERGYRPNAITY 373



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +++ +     K         L +++   G  PD+   + LI+  CK   +     
Sbjct: 402 PPDAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDVACLSTLIDALCKAAAIDSAQE 461

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L   +     PD VA++ LI  LC   R+ EA +    +    C P+V+TY+++++GLC
Sbjct: 462 LLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGLC 521

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++     A  LF+ M       GV+  P+ VTY+ +I   CK+  +D A ++  +MK+  
Sbjct: 522 KSRRINDAFLLFDRMRAA----GVM--PDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAK 575

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVTY++LI+G C A   ++A  +  EM+  G  P++VT+N ++D LCK  K+++A+
Sbjct: 576 CVPDVVTYSALINGLCKAGTVDKAFDVFQEMLGCGCAPNLVTYNTLIDGLCKINKVEQAA 635

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +LE+M  +   P++ T++ L++G C   R+  A  +   M+  GC     +Y
Sbjct: 636 EMLEIMRKQSCTPDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLPDRMTY 688



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 133/263 (50%), Gaps = 9/263 (3%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + +FN +   + KT   D    LF  +  +G  P+L TYN L++  CK  R      +
Sbjct: 1156 PDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAEYL 1215

Query: 165  LGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            L  + R   C +PD + + ++I GLC   R+  A  LF ++ + G  P+ +TYS +I+ L
Sbjct: 1216 LREMTRKQGC-SPDIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSL 1274

Query: 223  CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            C+      A N+ E M   NG       P  +TY T+IDG CK G +DKA E+   +  K
Sbjct: 1275 CKWRFMDEANNVLELMLK-NG-----FDPGAITYGTLIDGFCKTGNLDKALEILQLLLSK 1328

Query: 283  NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
               PDVVT++  I          +A  LL  M+  G+ PD VT+N ++   C     ++A
Sbjct: 1329 GSYPDVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDA 1388

Query: 343  SRLLELMILRGVNPNTSTFSTLM 365
              L E+M   G  P+ +T++TL+
Sbjct: 1389 VDLFEVMRQCGCEPDNATYTTLV 1411



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 9/231 (3%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P L ++N L   L K++ +D    L + +    G  PD+ TYN +I+  CK  RV   + 
Sbjct: 1191 PNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGLCKSKRVDRAYK 1250

Query: 164  VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +  ++L     PD V ++ +I  LC    + EA  +   +   G  P  ITY TLI+G C
Sbjct: 1251 LFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVLELMLKNGFDPGAITYGTLIDGFC 1310

Query: 224  RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            +TG+   AL + + + +  G +     P+ VT++  ID L K G + +A EL   M    
Sbjct: 1311 KTGNLDKALEILQLLLS-KGSY-----PDVVTFSIFIDWLSKRGRLRQAGELLETMLRAG 1364

Query: 284  INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTFNVIMDEL 333
            + PD VTYN+L+ GFC A+   E    L E+M Q G +PD  T+  ++  L
Sbjct: 1365 LVPDTVTYNTLLKGFCDAS-LTEDAVDLFEVMRQCGCEPDNATYTTLVGHL 1414



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 17/309 (5%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +EA  + + ML     P  +T   L+ G   KT + D  L + + L S G +PD+ T++I
Sbjct: 1281 DEANNVLELMLKNGFDPGAITYGTLIDG-FCKTGNLDKALEILQLLLSKGSYPDVVTFSI 1339

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
             I+   K GR+     +L  +LR+   PD V + +L+KG C  S   +A  LF  ++  G
Sbjct: 1340 FIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYNTLLKGFCDASLTEDAVDLFEVMRQCG 1399

Query: 208  CKPNVITYSTLINGLC-RTGHTIVALNLFEEMANGNGKF----------GVVCKPNTVTY 256
            C+P+  TY+TL+  L  +  +  +   + + M +   K            +  + +    
Sbjct: 1400 CEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVDTGFKLNHELSSKLEASIEVEADVRLG 1459

Query: 257  TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
              I+D   K G    A+++F  M  +N    VV +++++  + +     +A  L   M  
Sbjct: 1460 CAIVDMFGKCGSPQDARKVFEGMDQRN----VVLWSAMLGVYVFHKQEEQAFGLWRVMGL 1515

Query: 317  QGVQPDVVTFNVIMDELCKNGKMDEA-SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +GV+PD VTF  ++   C  G +D A    + +    G+ P    FS ++D     G VN
Sbjct: 1516 EGVEPDAVTFLSLLTMCCHAGLLDAAVDEFVSISRDYGLEPGVDHFSCVIDLLGRLGLVN 1575

Query: 376  HAKELFVSM 384
             A++L + M
Sbjct: 1576 EAEDLMLGM 1584


>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
          Length = 746

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 104/321 (32%), Positives = 167/321 (52%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N     L +  H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 288 PDQITYNTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 347

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     PD   F +LI  LC+ +R+ EA  L  ++   G  P+V T++ LIN LC+
Sbjct: 348 LNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCK 407

Query: 225 TGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTVT 255
            G   +AL LFEEM +                    GK G             C  +TVT
Sbjct: 408 VGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVT 467

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y TIIDGLCK+  +++A+E+F QM  + I+ + +T+N+LI G C     ++AN L+ +M+
Sbjct: 468 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQLISQMI 527

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+QP+ +T+N I+   CK G + +A+ +L+ M   G   +  T+ TL++G C  GR  
Sbjct: 528 SEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQ 587

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A +L   M   G + T  +Y
Sbjct: 588 VALKLLRGMRIKGMRATPKAY 608



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 152/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN L   L +     T + + + ++S+G+ PD  T+  L+  F + G +  
Sbjct: 179 RGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKA 238

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V  R+L    +P  V    LI G C   R+ +A     +  A G +P+ ITY+T +N
Sbjct: 239 ALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIANGFEPDQITYNTFVN 298

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC+ GH   AL + + M            P+  TY  +++ LCK G +++AK +  QM 
Sbjct: 299 GLCQNGHVGHALKVMDVMVQEGH------DPDVFTYNIVVNCLCKNGQLEEAKGILNQMV 352

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           ++   PD+ T+N+LI   C  N   EA  L  ++  +G+ PDV TFN++++ LCK G   
Sbjct: 353 ERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQ 412

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A RL E M   G  P+  T++TL+D  C  G++  A +L   MES GC  +  +Y
Sbjct: 413 LALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTY 468



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 160/309 (51%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M+  R   P +T+FN L   L      +  L L +++   GL PD+YT+NIL
Sbjct: 343 EAKGILNQMVE-RGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLKGLSPDVYTFNIL 401

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G       +   +  S  TPD V + +LI  LC+  ++ +A  L  ++++ GC
Sbjct: 402 INALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGC 461

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             + +TY+T+I+GLC+      A  +F++M   G  +       N +T+ T+IDGLCK+ 
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR-------NAITFNTLIDGLCKDK 514

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A +L  QM  + + P+ +TYNS++  +C   D  +A  +L  M   G + DVVT+ 
Sbjct: 515 RIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYG 574

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK G+   A +LL  M ++G+      ++ ++           A  LF  M  +
Sbjct: 575 TLINGLCKAGRTQVALKLLRGMRIKGMRATPKAYNPVIQSLFRRNNTRDAMNLFREMTEV 634

Query: 388 GCKHTVFSY 396
           G     F+Y
Sbjct: 635 GEPPDAFTY 643



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 153/304 (50%), Gaps = 21/304 (6%)

Query: 107 LTSFNLLFGCLAKTKHYDTVL-------------SLFKRLNSTGLFPDLYTYNILINCFC 153
           L   + LFG  A T  Y+ +L             +++  +   G+ PD+ T+N L+   C
Sbjct: 137 LNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVTFNTLMKALC 196

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           +  +V    ++L  +  S   PD   FT+L++G   E  I  A  +  ++   GC P  +
Sbjct: 197 RAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARMLEMGCSPTKV 256

Query: 214 TYSTLINGLCRTGHTIVALNLFE-EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           T + LING C+ G    AL   + E+ANG        +P+ +TY T ++GLC+ G V  A
Sbjct: 257 TVNVLINGYCKLGRVEDALGYIQQEIANG-------FEPDQITYNTFVNGLCQNGHVGHA 309

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            ++   M  +  +PDV TYN +++  C      EA  +L +M+++G  PD+ TFN ++  
Sbjct: 310 LKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVA 369

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC   +++EA  L   + L+G++P+  TF+ L++  C  G    A  LF  M+S GC   
Sbjct: 370 LCSGNRLEEALDLARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPD 429

Query: 393 VFSY 396
             +Y
Sbjct: 430 EVTY 433



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 116/248 (46%), Gaps = 7/248 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  R+     
Sbjct: 462 PRSTVTYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKRIDDANQ 521

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ +++     P+ + + S++   C +  I +AA +   + A G + +V+TY TLINGLC
Sbjct: 522 LISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLC 581

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL L   M       G+   P    Y  +I  L +      A  LF +M +  
Sbjct: 582 KAGRTQVALKLLRGMRIK----GMRATPK--AYNPVIQSLFRRNNTRDAMNLFREMTEVG 635

Query: 284 INPDVVTYNSLIHGFCY-ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD  TY  +  G C       EA   L+EM+D+G  P+  +F ++ + L   G  D  
Sbjct: 636 EPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 695

Query: 343 SRLLELMI 350
            R +E++I
Sbjct: 696 IRAIEIII 703



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 100/209 (47%), Gaps = 5/209 (2%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIME-AAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           R  F P    +  +I+ L A +   +    L T+++  G +  V    + +    R    
Sbjct: 70  REDFAPGPEVYEEIIRKLGAAAGAADLMKVLVTEMRREGHQVRVGVVHSFLESYARQQLF 129

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A++L   +   +  FG+  + +TV Y  +++ L +   +   + ++ +M ++ I PDV
Sbjct: 130 VDAVDLV--LNQLDPLFGI--QADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDV 185

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT+N+L+   C A+    A  +L EM   GV PD  TF  +M    + G +  A R+   
Sbjct: 186 VTFNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKAR 245

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           M+  G +P   T + L++G+C  GRV  A
Sbjct: 246 MLEMGCSPTKVTVNVLINGYCKLGRVEDA 274



 Score = 77.0 bits (188), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 3/127 (2%)

Query: 268 FVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           FVD A +L L   D    I  D V YN L++     +       +  EM ++G++PDVVT
Sbjct: 129 FVD-AVDLVLNQLDPLFGIQADTVVYNHLLNVLVEGSKMKLLETVYSEMGERGIKPDVVT 187

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN +M  LC+  ++  A  +LE M   GV P+ +TF+TLM GF   G +  A  +   M 
Sbjct: 188 FNTLMKALCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEGSIKAALRVKARML 247

Query: 386 SMGCKHT 392
            MGC  T
Sbjct: 248 EMGCSPT 254


>gi|147817754|emb|CAN66662.1| hypothetical protein VITISV_031722 [Vitis vinifera]
          Length = 1060

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 165/322 (51%), Gaps = 31/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N++   L K   +DT+  ++  + + G  P++ TY  LI+  C+ G     F +
Sbjct: 156 PAMQACNMVLDGLVKKGRFDTMWKVYGDMVARGASPNVVTYGTLIDGCCRQGDFLKAFRL 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P  V +T LI+GLC ESRI EA ++F  ++  G  PN+ TY+T+++G C+
Sbjct: 216 FDEMIEKKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGMLPNLYTYNTMMDGYCK 275

Query: 225 TGHTIVALNLFEEMANGNG------KFGV----VCK--------------------PNTV 254
             H   AL L+ EM  G+G       FG+    +CK                    PN  
Sbjct: 276 IAHVKKALELYXEML-GDGLLPNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIF 334

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            Y  +IDG CK G + +A  L  +++   I PDV TY+ LI G C  +   EA+ LL EM
Sbjct: 335 VYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEM 394

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +G  P+ VT+N ++D  CK G M++A  +   M  +G+ PN  TFSTL+DG+C  G++
Sbjct: 395 KKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDGYCKAGKM 454

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  L+  M   G    V +Y
Sbjct: 455 EAAMGLYTEMVIKGLLPDVVAY 476



 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 108/334 (32%), Positives = 170/334 (50%), Gaps = 35/334 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD       +AF +FD M+  +   P +  + +L   L          S+F+ + ++G+
Sbjct: 206 QGDFL-----KAFRLFDEMIE-KKIFPTVVIYTILIRGLCGESRISEAESMFRTMRNSGM 259

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+LYTYN +++ +CK+  V     +   +L     P+ V F  LI GLC    ++ A  
Sbjct: 260 LPNLYTYNTMMDGYCKIAHVKKALELYXEMLGDGLLPNVVTFGILIDGLCKTDEMVSARK 319

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE--------------------- 237
               + +FG  PN+  Y+ LI+G C+ G+   AL+L  E                     
Sbjct: 320 FLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLC 379

Query: 238 ----MANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               M   +G    + K    PN VTY T+IDG CKEG ++KA E+  QM +K I P+++
Sbjct: 380 GVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNII 439

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+++LI G+C A     A  L  EM+ +G+ PDVV +  ++D   K+G   EA RL + M
Sbjct: 440 TFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEM 499

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
              G++PN  T S L+DG C  GR++ A +LF++
Sbjct: 500 QEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLA 533



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 96/306 (31%), Positives = 155/306 (50%), Gaps = 23/306 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F +L   L KT    +       + S G+ P+++ YN LI+ +CK G +S    +
Sbjct: 296 PNVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSL 355

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I +    PD   ++ LIKGLC   R+ EA  L  ++K  G  PN +TY+TLI+G C+
Sbjct: 356 HSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCK 415

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+ +  +M           +PN +T++T+IDG CK G ++ A  L+ +M  K +
Sbjct: 416 EGNMEKAIEVCSQMTEKG------IEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGL 469

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV Y +LI G     +  EA  L  EM + G+ P+V T + ++D LCK+G++ +A +
Sbjct: 470 LPDVVAYTALIDGHFKDGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIK 529

Query: 345 LLELMILRGVN---------------PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L   +   G +               PN   ++ L+ G C  GR+  A + F  M   G 
Sbjct: 530 LF--LAKTGTDTTGSKTNELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGL 587

Query: 390 KHTVFS 395
           +  VF+
Sbjct: 588 RPDVFT 593



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 154/340 (45%), Gaps = 51/340 (15%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLL-----FGCLA----KTKHYDTVLSLFKRLNSTGLF 139
           +  C  D M++ R     + SF ++     + CL     K  +    LSL   +    + 
Sbjct: 306 DGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGNLSEALSLHSEIEKHEIL 365

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++TY+ILI   C + R+     +L  + +  F P+AV + +LI G C E  + +A  +
Sbjct: 366 PDVFTYSILIKGLCGVDRMEEADGLLQEMKKKGFLPNAVTYNTLIDGYCKEGNMEKAIEV 425

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-------------------- 239
            +++   G +PN+IT+STLI+G C+ G    A+ L+ EM                     
Sbjct: 426 CSQMTEKGIEPNIITFSTLIDGYCKAGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFK 485

Query: 240 NGNGKFG---------VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK---------- 280
           +GN K               PN  T + +IDGLCK+G +  A +LFL             
Sbjct: 486 DGNTKEAFRLHKEMQEAGLHPNVFTLSCLIDGLCKDGRISDAIKLFLAKTGTDTTGSKTN 545

Query: 281 --DKNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
             D+++ +P+ V Y +LI G C      +A+    +M   G++PDV T  VI+    +  
Sbjct: 546 ELDRSLCSPNHVMYTALIQGLCTDGRIFKASKFFSDMRCSGLRPDVFTCIVIIQGHFRAM 605

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            + +   L   ++  G+ PN+S +  L  G+  +G +  A
Sbjct: 606 HLRDVMMLQADILKMGIIPNSSVYRVLAKGYEESGYLKSA 645



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/272 (22%), Positives = 110/272 (40%), Gaps = 23/272 (8%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           K+ C SS    +TA   +    ++ +   ++P  P      + F      +  +  L LF
Sbjct: 681 KKECHSSY---LTAFGIHSFVLLWYFHTILKPPSPHEILKKVPFIGQKGDQRPNKALQLF 737

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           +++      PD+ T  + ++    +G +  G  +   I       D     SLI      
Sbjct: 738 RQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKC 797

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA----------- 239
             I  A  LF   +    K +V T++++I G    G    AL LF EM            
Sbjct: 798 GEIGTARRLFDGTQ----KKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKR 853

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-DKNINPDVVTYNSLIHGF 298
           NG  +  +V  PN VT+  ++      G V++ K+ F  MK D ++ P +  +  ++   
Sbjct: 854 NGEXESSLVL-PNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLL 912

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           C A    EA   +++M    V+P+ V +  ++
Sbjct: 913 CRAGLLTEAYEFILKM---PVRPNAVVWRTLL 941



 Score = 47.0 bits (110), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 50/219 (22%), Positives = 89/219 (40%), Gaps = 32/219 (14%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAA-LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           PD V  T  +   CA+   ++    +   ++  G   ++   ++LIN   + G    A  
Sbjct: 747 PDIVTVTVALSA-CADLGALDMGEWIHAYIRHRGLDTDLCLNNSLINMYSKCGEIGTARR 805

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN---------- 283
           LF+             K +  T+T++I G    G  ++A +LF +MK+ N          
Sbjct: 806 LFDGTQ----------KKDVTTWTSMIVGHALHGQAEEALQLFTEMKETNKRARKNKRNG 855

Query: 284 ------INPDVVTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKN 336
                 + P+ VT+  ++    +A    E       M  D  ++P +  F  ++D LC+ 
Sbjct: 856 EXESSLVLPNDVTFMGVLMACSHAGLVEEGKQHFRSMKEDYSLRPRISHFGCMVDLLCRA 915

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           G + EA    E ++   V PN   + TL+    L G  N
Sbjct: 916 GLLTEA---YEFILKMPVRPNAVVWRTLLGACSLQGDSN 951



 Score = 39.7 bits (91), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 55/117 (47%), Gaps = 4/117 (3%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           +KA +LF QM+  +  PD+VT    +         +    +   +  +G+  D+   N +
Sbjct: 731 NKALQLFRQMQMDDXQPDIVTVTVALSACADLGALDMGEWIHAYIRHRGLDTDLCLNNSL 790

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++   K G++  A RL +    + V    +T+++++ G  L G+   A +LF  M+ 
Sbjct: 791 INMYSKCGEIGTARRLFDGTQKKDV----TTWTSMIVGHALHGQAEEALQLFTEMKE 843


>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 543

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 12/305 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD ML+ R   P + ++++L     K   Y   + L   + S G  PD+ TYN+L
Sbjct: 178 DALAVFDDMLH-RGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKGCEPDIVTYNVL 236

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C  G V     VL  +      PDAV +T ++K LC+  R  EA  L TK+ +  C
Sbjct: 237 INAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDC 296

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +T++ +I  LC+ G    A  +  +M+         C P+ +TY++I+DGLCKE  
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHG------CTPDIITYSSIMDGLCKERR 350

Query: 269 VDKA----KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           VD+A    KEL  +M  KN  PD VT+N++I   C    ++ A  ++ EM + G  PD+ 
Sbjct: 351 VDEAIKLLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDIT 410

Query: 325 TFNVIMDE-LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           T+N I+D  LCK+ K +EA  LL LM+  G+ P+T+T+ +L  G      +  A  +F  
Sbjct: 411 TYNCIVDGFLCKSCKTEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRR 470

Query: 384 MESMG 388
           +++MG
Sbjct: 471 VQAMG 475



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/297 (30%), Positives = 150/297 (50%), Gaps = 11/297 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M++  P  P   ++N L   L         L++F  +   G  P + TY+IL++  CK  
Sbjct: 150 MIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCKES 209

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
                 V+L  +      PD V +  LI  +C++  + EA  +   L ++GCKP+ +TY+
Sbjct: 210 GYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPSYGCKPDAVTYT 269

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            ++  LC +     A  L  +M      F   C P+ VT+  +I  LC++GFV +A ++ 
Sbjct: 270 PVLKSLCSSERWEEADKLLTKM------FSNDCAPDEVTFNAVITSLCQKGFVGRATKVL 323

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEA----NCLLIEMMDQGVQPDVVTFNVIMDE 332
            QM +    PD++TY+S++ G C     +EA      LL EM+ +   PD VTFN I+  
Sbjct: 324 AQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTIITS 383

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF-CLTGRVNHAKELFVSMESMG 388
           LC+ G  D A ++++ M   G  P+ +T++ ++DGF C + +   A +L   M S G
Sbjct: 384 LCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLNLMVSNG 440



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 80/252 (31%), Positives = 131/252 (51%), Gaps = 13/252 (5%)

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + TYN ++N +C+ G +     ++  +    F PD   +  LI+ LC    +++A A+F 
Sbjct: 128 IITYNTMVNGYCRAGNIDAARRMIDSVP---FAPDTFTYNPLIRALCVRGCVLDALAVFD 184

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            +   GC P+V+TYS L++  C+      A+ L +EM +        C+P+ VTY  +I+
Sbjct: 185 DMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEMRSKG------CEPDIVTYNVLIN 238

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            +C +G V +A ++   +      PD VTY  ++   C +  W EA+ LL +M      P
Sbjct: 239 AMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAP 298

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA---- 377
           D VTFN ++  LC+ G +  A+++L  M   G  P+  T+S++MDG C   RV+ A    
Sbjct: 299 DEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLL 358

Query: 378 KELFVSMESMGC 389
           KEL   M S  C
Sbjct: 359 KELLAEMVSKNC 370



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 104/391 (26%), Positives = 182/391 (46%), Gaps = 24/391 (6%)

Query: 21  RCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLT-VKDRASLEQFLKERCKSSGQ 79
           +C  +++  H R   ++     P  P   +    + RL  +  R  L+  L+     SG 
Sbjct: 31  KCPQAAADYHNRDHGTAKWTRTPPKPPARSGGGANRRLRGLVQRGELDGALRLVHSISGS 90

Query: 80  GDITAITPN----EAFC----IFDYMLNMRPSPPPLT--SFNLLFGCLAKTKHYDTVLSL 129
           G   A+ P     +  C    + D    +    P  T  ++N +     +  + D    +
Sbjct: 91  GKDPAVIPCNILIKKLCADGRVADAERVVEALGPSATIITYNTMVNGYCRAGNIDAARRM 150

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
              ++S    PD +TYN LI   C  G V     V   +L    +P  V ++ L+   C 
Sbjct: 151 ---IDSVPFAPDTFTYNPLIRALCVRGCVLDALAVFDDMLHRGCSPSVVTYSILLDATCK 207

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           ES   +A  L  ++++ GC+P+++TY+ LIN +C  G    AL +   + +    +G  C
Sbjct: 208 ESGYKQAVVLLDEMRSKGCEPDIVTYNVLINAMCSQGDVGEALKVLNSLPS----YG--C 261

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KP+ VTYT ++  LC     ++A +L  +M   +  PD VT+N++I   C       A  
Sbjct: 262 KPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLCQKGFVGRATK 321

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN----PNTSTFSTLM 365
           +L +M + G  PD++T++ IMD LCK  ++DEA +LL+ ++   V+    P+  TF+T++
Sbjct: 322 VLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQVTFNTII 381

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              C  G  + A ++   M   GC   + +Y
Sbjct: 382 TSLCQKGLFDRAIKVVDEMSEHGCIPDITTY 412



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 124/293 (42%), Gaps = 49/293 (16%)

Query: 97  MLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           +LN  PS    P   ++  +   L  ++ ++    L  ++ S    PD  T+N +I   C
Sbjct: 252 VLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVTFNAVITSLC 311

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF----GCK 209
           + G V     VL ++     TPD + ++S++ GLC E R+ EA  L  +L A      C 
Sbjct: 312 QKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCI 371

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG-LCKEGF 268
           P+ +T++T+I  LC+ G    A+ + +EM+         C P+  TY  I+DG LCK   
Sbjct: 372 PDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHG------CIPDITTYNCIVDGFLCKSCK 425

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++A +L   M    + PD  TY SL  G    ++   A  +   +   G+ PD + +N 
Sbjct: 426 TEEALDLLNLMVSNGLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485

Query: 329 IMDELCKNGKMD-----------------------------------EASRLL 346
           I+  LCK  + D                                   EA  LL
Sbjct: 486 ILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELL 538



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M++    P   T  +L FG L++    +  + +F+R+ + GL PD   YN 
Sbjct: 427 EEALDLLNLMVSNGLCPDTTTYKSLAFG-LSREDEMERAIGMFRRVQAMGLSPDKMLYNA 485

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           ++   CK  R          ++ +   PD   +  L++G+  E  + EA  L   L
Sbjct: 486 ILLGLCKKWRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEGFLEEAKELLGNL 541


>gi|297727717|ref|NP_001176222.1| Os10g0495400 [Oryza sativa Japonica Group]
 gi|255679525|dbj|BAH94950.1| Os10g0495400, partial [Oryza sativa Japonica Group]
          Length = 438

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 109/303 (35%), Positives = 165/303 (54%), Gaps = 8/303 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCK 154
           L +R     + SFN     +A+      V SLF R+   G   + PDL TY+ILI C C+
Sbjct: 49  LPLRGWGASIYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCR 107

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVI 213
            GR+  GF  LG +++  F  +A+ F  L+KGLCA+ R  +A  +   ++    C P+V 
Sbjct: 108 AGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVF 167

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           + + L+ GLC    +  AL L   MA+  G       P+ V+YTT+I+G  KEG  DKA 
Sbjct: 168 SCTILLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFFKEGDSDKAY 224

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
             + +M D+ I+P+VVTY+S+I   C A   ++A  +L  M+  GV PD +T+N I+   
Sbjct: 225 STYHEMLDRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGY 284

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C +G+  EA   L+ M   GV PN  T+ +LM+  C  GR   A+++F SM   G +  +
Sbjct: 285 CSSGQPKEAIGTLKKMRSDGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTKRGLEPDI 344

Query: 394 FSY 396
            +Y
Sbjct: 345 ATY 347



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 126/245 (51%), Gaps = 6/245 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD+ +Y  +IN F K G     +     +L    +P+ V ++S+I  LC    + +A
Sbjct: 199 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTYSSIIAALCKAQAMDKA 258

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +   +   G  P+ +TY+++++G C +G    A+   ++M +         +PN VTY
Sbjct: 259 MEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDG------VEPNVVTY 312

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            ++++ LCK G   +A+++F  M  + + PD+ TY +L+ G+       E + LL  M+ 
Sbjct: 313 RSLMNYLCKNGRCTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 372

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G+QPD   FN+++    K  K+D+A  +   M   G+NPN   + T++D  C +G V+ 
Sbjct: 373 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD 432

Query: 377 AKELF 381
           A   F
Sbjct: 433 AMLYF 437



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 125/257 (48%), Gaps = 8/257 (3%)

Query: 88  NEAFCIFDYMLNMRP--SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
            EA  +   M + R   SPP + S+  +     K    D   S +  +    + P++ TY
Sbjct: 183 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPNVVTY 242

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           + +I   CK   +     VL  ++++   PD + + S++ G C+  +  EA     K+++
Sbjct: 243 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRS 302

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY +L+N LC+ G    A  +F+ M     K G+  +P+  TY T++ G   
Sbjct: 303 DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMT----KRGL--EPDIATYRTLLQGYAT 356

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G + +   L   M    I PD   +N LI  +      ++A  +  +M   G+ P+VV 
Sbjct: 357 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 416

Query: 326 FNVIMDELCKNGKMDEA 342
           +  ++D LCK+G +D+A
Sbjct: 417 YGTVIDVLCKSGSVDDA 433



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 8/161 (4%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           SSGQ       P EA      M +     P + ++  L   L K         +F  +  
Sbjct: 286 SSGQ-------PKEAIGTLKKMRS-DGVEPNVVTYRSLMNYLCKNGRCTEARKIFDSMTK 337

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            GL PD+ TY  L+  +   G +     +L  ++R+   PD   F  LI     + ++ +
Sbjct: 338 RGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQ 397

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A  +F+K++  G  PNV+ Y T+I+ LC++G    A+  FE
Sbjct: 398 AMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDDAMLYFE 438


>gi|297805766|ref|XP_002870767.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
 gi|297316603|gb|EFH47026.1| EMB2745 [Arabidopsis lyrata subsp. lyrata]
          Length = 747

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 171/307 (55%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A   FD M   +   P + ++N L     K +  D    L + +   GL P+L +YN++I
Sbjct: 224 ALRFFDRM-EKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVI 282

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C+ GR+     VL  + +  ++ D V + +LIKG C E    +A  +  ++   G  
Sbjct: 283 NGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLS 342

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VITY++LI+ +C+ G+   A    ++M     +   +C PN  TYTT++DG  ++G++
Sbjct: 343 PSVITYTSLIHSMCKAGNMNRATEFLDQM-----RVRGLC-PNERTYTTLVDGFSQKGYM 396

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A  +  +M D   +P VVTYN+LI+G C A    +A  +L +M ++G+ PDVV+++ +
Sbjct: 397 NEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSYSTV 456

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   C++  +DEA R+   M+ +G+ P+T T+S+L+ GFC   R   A +LF  M  +G 
Sbjct: 457 LSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVGL 516

Query: 390 KHTVFSY 396
               F+Y
Sbjct: 517 PPDEFTY 523



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 151/288 (52%), Gaps = 7/288 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR-VSHGFVVLGRI 168
           F+L+    ++    D  LS+     + G  P + +YN +++   +  R +S    V   +
Sbjct: 137 FDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L+S  +P+   +  LI+G C    +  A   F +++  GC PNV+TY+TLI+G C+    
Sbjct: 197 LQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                L   MA          +PN ++Y  +I+GLC+EG + +   +  +M  +  + D 
Sbjct: 257 DDGFELLRSMALKG------LEPNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDE 310

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+LI G+C   ++++A  +  EM+  G+ P V+T+  ++  +CK G M+ A+  L+ 
Sbjct: 311 VTYNTLIKGYCKEGNFHQALVMHAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQ 370

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M +RG+ PN  T++TL+DGF   G +N A  +   M   G   +V +Y
Sbjct: 371 MRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTY 418



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 151/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N++   L +      +  +   +N  G   D  TYN LI  +CK G      V+
Sbjct: 273 PNLISYNVVINGLCREGRMKEISFVLTEMNKRGYSLDEVTYNTLIKGYCKEGNFHQALVM 332

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR   +P  + +TSLI  +C    +  A     +++  G  PN  TY+TL++G  +
Sbjct: 333 HAEMLRHGLSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQ 392

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  + +EM + NG       P+ VTY  +I+G C  G +  A  +   MK+K +
Sbjct: 393 KGYMNEAYRVLKEMID-NG-----FSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGL 446

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV+Y++++ GFC + D +EA  +  +M+ +G++PD +T++ ++   C+  +  EA  
Sbjct: 447 TPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACD 506

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+  G+ P+  T++ L++ +C+ G +  A +L   M   G    V +Y
Sbjct: 507 LFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTY 558



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 164/313 (52%), Gaps = 24/313 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +   ML    SP  +T +  L   + K  + +       ++   GL P+  TY  
Sbjct: 327 HQALVMHAEMLRHGLSPSVIT-YTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTT 385

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ F + G ++  + VL  ++ + F+P  V + +LI G C   ++++A A+   +K  G
Sbjct: 386 LVDGFSQKGYMNEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKG 445

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             P+V++YST+++G CR+     AL +  +M A G        KP+T+TY+++I G C++
Sbjct: 446 LTPDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKG-------IKPDTITYSSLIQGFCEQ 498

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
               +A +LF +M    + PD  TY +LI+ +C   D  +A  L  EM+++GV PDVVT+
Sbjct: 499 RRTKEACDLFDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTY 558

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD---------------GFCLT 371
           +V+++ L K  +  EA RLL  +      P+  T+ TL++               GFC+ 
Sbjct: 559 SVLINGLNKQARTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMK 618

Query: 372 GRVNHAKELFVSM 384
           G +  A ++F SM
Sbjct: 619 GMMTEADQVFESM 631



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 152/293 (51%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTK-HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + S+N +     ++K +     ++FK +  + + P+++TYNILI  FC  G +     
Sbjct: 167 PGVLSYNAVLDATIRSKRNISFAENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALR 226

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              R+ +    P+ V + +LI G C   +I +   L   +   G +PN+I+Y+ +INGLC
Sbjct: 227 FFDRMEKKGCLPNVVTYNTLIDGYCKLRKIDDGFELLRSMALKGLEPNLISYNVVINGLC 286

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G       +  EM N  G        + VTY T+I G CKEG   +A  +  +M    
Sbjct: 287 REGRMKEISFVLTEM-NKRG-----YSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHG 340

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P V+TY SLIH  C A + N A   L +M  +G+ P+  T+  ++D   + G M+EA 
Sbjct: 341 LSPSVITYTSLIHSMCKAGNMNRATEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAY 400

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+L+ MI  G +P+  T++ L++G C+ G++  A  +   M+  G    V SY
Sbjct: 401 RVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAIAVLEDMKEKGLTPDVVSY 453



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 147/303 (48%), Gaps = 22/303 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+ +   M++   SP  +T   L+ G     K  D + ++ + +   GL PD+ +Y+ 
Sbjct: 397 NEAYRVLKEMIDNGFSPSVVTYNALINGHCIAGKMVDAI-AVLEDMKEKGLTPDVVSYST 455

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ FC+   V     V  +++     PD + ++SLI+G C + R  EA  LF ++   G
Sbjct: 456 VLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDLFDEMLRVG 515

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY+ LIN  C  G    A+ L  EM       GV+  P+ VTY+ +I+GL K+ 
Sbjct: 516 LPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEK----GVL--PDVVTYSVLINGLNKQA 569

Query: 268 FVDKAKELFLQMKDKNINPDVVTYN---------------SLIHGFCYANDWNEANCLLI 312
              +AK L L++  +   P  VTY+               SLI GFC      EA+ +  
Sbjct: 570 RTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFE 629

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M+++  +PD   +NV++   C+ G + +A  L + M+  G   +T T   L+      G
Sbjct: 630 SMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEG 689

Query: 373 RVN 375
           +VN
Sbjct: 690 KVN 692



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 21/252 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ +     ++   D  L + +++ + G+ PD  TY+ LI  FC+  R      +
Sbjct: 448 PDVVSYSTVLSGFCRSYDVDEALRVKRKMVAKGIKPDTITYSSLIQGFCEQRRTKEACDL 507

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR    PD   +T+LI   C E  + +A  L  ++   G  P+V+TYS LINGL +
Sbjct: 508 FDEMLRVGLPPDEFTYTALINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNK 567

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID---------------GLCKEGFV 269
              T  A  L  ++      F     P+ VTY T+I+               G C +G +
Sbjct: 568 QARTREAKRLLLKL------FYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMM 621

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A ++F  M +KN  PD   YN +IHG C   D  +A  L  EM+  G     VT   +
Sbjct: 622 TEADQVFESMLEKNHKPDGTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIAL 681

Query: 330 MDELCKNGKMDE 341
           +  L K GK++E
Sbjct: 682 VKTLHKEGKVNE 693



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/285 (25%), Positives = 113/285 (39%), Gaps = 22/285 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   M+     P  +T  +L+ G   + +       LF  +   GL PD +TY  
Sbjct: 467 DEALRVKRKMVAKGIKPDTITYSSLIQG-FCEQRRTKEACDLFDEMLRVGLPPDEFTYTA 525

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +C  G +     +   ++     PD V ++ LI GL  ++R  EA  L  KL    
Sbjct: 526 LINAYCMEGDLQKAIQLHNEMVEKGVLPDVVTYSVLINGLNKQARTREAKRLLLKLFYEE 585

Query: 208 CKPNVITYSTLIN---------------GLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
             P+ +TY TLI                G C  G    A  +FE M   N K      P+
Sbjct: 586 SVPSDVTYHTLIENCSNIEFKSVVSLIKGFCMKGMMTEADQVFESMLEKNHK------PD 639

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y  +I G C+ G + KA  L+ +M         VT  +L+         NE N ++ 
Sbjct: 640 GTAYNVMIHGHCRGGDIRKAYSLYKEMVKSGFLLHTVTVIALVKTLHKEGKVNELNSVIA 699

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            ++      +     V+++   + G MD    +L  M   G  PN
Sbjct: 700 NVLRSCELSEAEQAKVLVEINHREGNMDVVLDVLAEMAKDGFLPN 744



 Score = 67.8 bits (164), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 74/150 (49%), Gaps = 1/150 (0%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA-NDWNE 306
           +C   +  +  ++    +   +DKA  +    +     P V++YN+++     +  + + 
Sbjct: 129 LCNSTSSVFDLVVKSYSRLCLIDKALSIVHLSQAHGFMPGVLSYNAVLDATIRSKRNISF 188

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +  EM+   V P+V T+N+++   C  G +D A R  + M  +G  PN  T++TL+D
Sbjct: 189 AENVFKEMLQSQVSPNVFTYNILIRGFCLAGNLDVALRFFDRMEKKGCLPNVVTYNTLID 248

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C   +++   EL  SM   G +  + SY
Sbjct: 249 GYCKLRKIDDGFELLRSMALKGLEPNLISY 278


>gi|115482764|ref|NP_001064975.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|22165074|gb|AAM93691.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31432889|gb|AAP54465.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639584|dbj|BAF26889.1| Os10g0499500 [Oryza sativa Japonica Group]
 gi|125575293|gb|EAZ16577.1| hypothetical protein OsJ_32049 [Oryza sativa Japonica Group]
 gi|215694503|dbj|BAG89496.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215697419|dbj|BAG91413.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|295901486|dbj|BAJ07249.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
 gi|295901490|dbj|BAJ07251.1| pentatricopeptide repeat-containing protein [Oryza sativa Japonica
           Group]
          Length = 506

 Score =  188 bits (477), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 115/342 (33%), Positives = 173/342 (50%), Gaps = 26/342 (7%)

Query: 59  TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
           T++DRA        R  S G  D        A  +FD +L  R    P+ S N     +A
Sbjct: 22  TIQDRA--------RVGSGGAED--------ALDVFDELLR-RGIGAPIRSLNGALADVA 64

Query: 119 KTKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           +      V S F R+   G   + P ++TY ILI C C  GR+  GF  LG +++  F  
Sbjct: 65  RDNPAAAV-SRFNRMARAGASMVTPTVHTYGILIGCCCSAGRLDLGFAALGHVVKKGFRV 123

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           + + F  L+KGLCA+ R  +A  +  + +    C PNV +++ ++ GLC    +  AL L
Sbjct: 124 EPIIFNPLLKGLCADKRTDDAMDIVLRGMTELSCVPNVFSHTIILKGLCHENRSQEALEL 183

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
              MA+  G     C PN V+Y+T+IDGL K G  DKA   + +M D+ I P+VV Y+S+
Sbjct: 184 LHMMADDGGG----CLPNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSI 239

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I   C     ++A  +   M+  GV P+  T+  ++   C +G++ EA + LE M   GV
Sbjct: 240 IAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGV 299

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            PN  T+S+ MD  C  GR   A+++F SM   G K  + +Y
Sbjct: 300 EPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTY 341



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 146/294 (49%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P + S  ++   L         L L   +  +  G  P++ +Y+ +I+   K G     +
Sbjct: 159 PNVFSHTIILKGLCHENRSQEALELLHMMADDGGGCLPNVVSYSTVIDGLLKGGDPDKAY 218

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +L     P+ V ++S+I  LC    + +A  +  ++   G  PN  TY++L++G 
Sbjct: 219 ATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEVHDRMVKNGVTPNCFTYTSLVHGF 278

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C +G    A+   E+M + NG      +PN VTY++ +D LCK G   +A+++F  M  +
Sbjct: 279 CSSGQLTEAIKFLEKMCS-NG-----VEPNVVTYSSFMDYLCKNGRCTEARKIFDSMVKR 332

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD+ TY+SL+HG+       E + L   M+   +QPD   FN ++    K GK+DEA
Sbjct: 333 GLKPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDMQPDHYVFNTLIYASAKQGKVDEA 392

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   M  +G+ PN  T+STL++G+C   R+ +A  LF  M S G      +Y
Sbjct: 393 MLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALALFQEMVSNGVSPNFITY 446



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 151/289 (52%), Gaps = 6/289 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ +   L K    D   + ++ +    + P++  Y+ +I   CK   +     V
Sbjct: 196 PNVVSYSTVIDGLLKGGDPDKAYATYREMLDRRILPNVVIYSSIIAALCKGQAMDKAMEV 255

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++++  TP+   +TSL+ G C+  ++ EA     K+ + G +PNV+TYS+ ++ LC+
Sbjct: 256 HDRMVKNGVTPNCFTYTSLVHGFCSSGQLTEAIKFLEKMCSNGVEPNVVTYSSFMDYLCK 315

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F+ M     K G+  KP+  TY++++ G   EG + +   LF  M   ++
Sbjct: 316 NGRCTEARKIFDSMV----KRGL--KPDITTYSSLLHGYAIEGALVEMHGLFDLMVQSDM 369

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   +N+LI+        +EA  +  +M  QG++P+ VT++ +++  CK  +M+ A  
Sbjct: 370 QPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCKITRMENALA 429

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           L + M+  GV+PN  T++ ++ G   TGR   AKE +V +   G K  +
Sbjct: 430 LFQEMVSNGVSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGKKDLI 478



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 92/203 (45%), Gaps = 30/203 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++     L K         +F  +   GL PD+ TY+ L++ +   G +     +
Sbjct: 301 PNVVTYSSFMDYLCKNGRCTEARKIFDSMVKRGLKPDITTYSSLLHGYAIEGALVEMHGL 360

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++S   PD   F +LI     + ++ EA  +F+K++  G KPN +TYSTLING C+
Sbjct: 361 FDLMVQSDMQPDHYVFNTLIYASAKQGKVDEAMLVFSKMRQQGLKPNCVTYSTLINGYCK 420

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ------ 278
                 AL LF+EM + NG       PN +TY  ++ GL + G    AKE ++Q      
Sbjct: 421 ITRMENALALFQEMVS-NG-----VSPNFITYNIMLQGLFRTGRTATAKEFYVQIIKSGK 474

Query: 279 ------------------MKDKN 283
                             M+D +
Sbjct: 475 KDLIEQGLLEELDDLFLSMEDND 497


>gi|125548468|gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 165/304 (54%), Gaps = 8/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++   +F+  +  R   P + SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 235 HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 294

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++  C+   VS G  VL R+ R     P+ V FTS+I G C   ++ +A A++  + A 
Sbjct: 295 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 354

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN +TY+ LING  + G    A+ ++++M        + C P+ VT++++IDG C+ 
Sbjct: 355 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 408

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A  ++  M    I P+V T++ +IH  C  N  +EA CLL E+ +   + P    
Sbjct: 409 GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLLNELNLRPDIAPQAFI 468

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK GK+DEA+ + + M  +G  P+  T++ L+ G+C+  R++ A   F  M 
Sbjct: 469 YNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMV 528

Query: 386 SMGC 389
             GC
Sbjct: 529 EAGC 532



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 158/291 (54%), Gaps = 9/291 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGR 167
           ++N L   L        V++LF+R     ++ PD++++N++I   C++G+V     ++ R
Sbjct: 220 AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 279

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTG 226
           +     +PD V    ++ GLC  + +     +  +L+  G C PNV+T++++I+G C+ G
Sbjct: 280 MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 339

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ ++ +M       G++  PNTVTY  +I+G  K G +  A E++ QM      P
Sbjct: 340 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 393

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVT++SLI G+C     ++A  +  +M    +QP+V TF++I+  LCK  + DEA  LL
Sbjct: 394 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAICLL 453

Query: 347 ELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + LR  + P    ++ ++D  C  G+V+ A  +   ME  GC+   ++Y
Sbjct: 454 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTY 504



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/314 (28%), Positives = 146/314 (46%), Gaps = 14/314 (4%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           S +Q +   C+S  Q D        A  +FD M       P     + L          D
Sbjct: 149 SCQQIIVVLCRSGRQAD--------ALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLD 200

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSL 183
              +L  + +  G   + Y YN L++     GRV     +  R ++   ++PD  +F  +
Sbjct: 201 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVV 260

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           IKG+C   ++ +A  L  ++  FGC P+ +T++ +++GLCRT        +   +     
Sbjct: 261 IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDG- 319

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
               VC PN VT+T++I G CK G ++ A  ++  M    I P+ VTYN LI+G+    D
Sbjct: 320 ----VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 375

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
              A  +  +M      PDVVTF+ ++D  C+ G++D+A R+   M    + PN  TFS 
Sbjct: 376 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 435

Query: 364 LMDGFCLTGRVNHA 377
           ++   C   R + A
Sbjct: 436 IIHSLCKQNRSDEA 449



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  +     K    +  ++++  + ++G+ P+  TYN+LIN + K+G +     V
Sbjct: 323 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 382

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ R    PD V F+SLI G C   ++ +A  +++ +     +PNV T+S +I+ LC+
Sbjct: 383 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 442

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A+ L  E+   N +  +   P    Y  +ID LCK G VD+A  +   M++K  
Sbjct: 443 QNRSDEAICLLNEL---NLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 497

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  LI G+C  +  +EA     EM++ G  PD +T N  +  L K G  +E   
Sbjct: 498 RPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDH 557

Query: 345 LLEL 348
           ++ L
Sbjct: 558 VMRL 561



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 114/261 (43%), Gaps = 42/261 (16%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEA------------------------------------ 196
            TP A +   +I  LC   R  +A                                    
Sbjct: 143 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDAS 202

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           A L +K   FGC+     Y+ L++ L   G     + LFE           V  P+  ++
Sbjct: 203 ATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDR-----VYSPDVWSF 257

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I G+C+ G V KA EL  +M +   +PD VT+N ++ G C  N+ +  + +L  +  
Sbjct: 258 NVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQR 317

Query: 317 QGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            GV  P+VVTF  ++   CK GK+++A  +   M+  G+ PNT T++ L++G+   G + 
Sbjct: 318 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 377

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A E++  M  + C   V ++
Sbjct: 378 SAVEVYQQMTRLRCPPDVVTF 398



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 48/248 (19%)

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYST-----LINGLCRTGHTIVALNLFEEMANGN 242
           CA S    A A+FT L    C P  IT S      +I  LCR+G    AL LF++M    
Sbjct: 125 CASS----ALAVFTALH---CSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHY 177

Query: 243 G--------------------------------KFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           G                                +FG  C+     Y  ++  L   G V 
Sbjct: 178 GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFG--CRVEAYAYNKLMSSLIGRGRVH 235

Query: 271 KAKELFLQ-MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
               LF + ++D+  +PDV ++N +I G C      +A  L+  M + G  PD VT N+I
Sbjct: 236 DVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNII 295

Query: 330 MDELCKNGKMDEASRLLELMILRGV-NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D LC+  ++     +L  +   GV  PN  TF++++ G+C  G++  A  ++  M + G
Sbjct: 296 VDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 355

Query: 389 CKHTVFSY 396
                 +Y
Sbjct: 356 IMPNTVTY 363



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA C+ +  LN+RP   P    +N +   L K    D    + K +   G  PD YTY 
Sbjct: 447 DEAICLLNE-LNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYT 505

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ILI  +C   R+S   +    ++ +  +PD++     I  L
Sbjct: 506 ILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCL 546


>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
 gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
          Length = 841

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 94/302 (31%), Positives = 170/302 (56%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++   ++ R  P   T   L+ G     K  D +  LF ++ S  + PD+YT++I
Sbjct: 350 NDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAI-DLFNKMTSKNIIPDVYTFSI 408

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G +     VL  +++    PD V ++SL+ G C  + + +A ++F  +   G
Sbjct: 409 LVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRG 468

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              NV +Y+ +ING C+      A+ LF+EM +          P+ +TY+++IDGLCK G
Sbjct: 469 VTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQ------IFPDVITYSSLIDGLCKSG 522

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A EL  +M  +   PD++TYNS++   C  +  ++A  LL ++  QG++PD+ T+ 
Sbjct: 523 RISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDMNTYT 582

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  LC++GK+++A ++ E ++++G N +   ++ ++ GFC  G  + A  L   ME  
Sbjct: 583 ILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEEN 642

Query: 388 GC 389
           GC
Sbjct: 643 GC 644



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 161/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   + K KH +    L+    S  +FPD++TYN LI+ FC +G++     +
Sbjct: 331 PDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALISGFCIVGKLKDAIDL 390

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      PD   F+ L+ G C +  I EA  +   +     KP+V+TYS+L++G C 
Sbjct: 391 FNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMKQSIKPDVVTYSSLMDGYCL 450

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F  M++     GV    N  +Y  +I+G CK   VD+A +LF +M  K I
Sbjct: 451 VNEVNKAESIFNTMSHR----GVT--ANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQI 504

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+TY+SLI G C +   + A  L+ EM  +G QPD++T+N I+D LCK   +D+A  
Sbjct: 505 FPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAIT 564

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  +  +G+ P+ +T++ L+ G C +G++  A+++F  +   G    V++Y
Sbjct: 565 LLTKLKGQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAY 616



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/285 (36%), Positives = 158/285 (55%), Gaps = 21/285 (7%)

Query: 126 VLSLFKRLN-----STGLFPDLYTYNILIN---------CFCKMGRVSHGFVVLGRILRS 171
           +L  FKRL       + LF  L+++ ILI          C  K   +S  +    +IL++
Sbjct: 199 ILWDFKRLFLKDFLQSRLFNVLHSFKILIEYHKTFIKQKCLLKSFEISIEYTP-PKILKN 257

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
            + PD +  T+ IKG C + +I +A     K+ A G   + ++Y TLINGLC+ G T  A
Sbjct: 258 GYEPDTITLTTFIKGFCLKGQIHQALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKAA 317

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           L L   +   +GK   + +P+ V Y TIIDG+CK+  V+ A +L+ +   K I PDV TY
Sbjct: 318 LEL---LRRNDGK---LVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTY 371

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N+LI GFC      +A  L  +M  + + PDV TF++++D  CK+G + EA  +L +M+ 
Sbjct: 372 NALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVLAMMMK 431

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + P+  T+S+LMDG+CL   VN A+ +F +M   G    V SY
Sbjct: 432 QSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSY 476



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 159/296 (53%), Gaps = 9/296 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
            P    LT+F   F CL    H    L    ++ + G   D  +Y  LIN  CK+G    
Sbjct: 260 EPDTITLTTFIKGF-CLKGQIH--QALHFHDKVIAMGFHLDQVSYGTLINGLCKVGETKA 316

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L R       PD V + ++I G+C +  + +A  L+++  +    P+V TY+ LI+
Sbjct: 317 ALELLRRNDGKLVQPDVVMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYNALIS 376

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C  G    A++LF +M + N        P+  T++ ++DG CK+G + +AK +   M 
Sbjct: 377 GFCIVGKLKDAIDLFNKMTSKN------IIPDVYTFSILVDGFCKDGNIKEAKNVLAMMM 430

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            ++I PDVVTY+SL+ G+C  N+ N+A  +   M  +GV  +V ++N++++  CK   +D
Sbjct: 431 KQSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVD 490

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA +L + M  + + P+  T+S+L+DG C +GR+++A EL   M   G +  + +Y
Sbjct: 491 EAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITY 546



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/267 (31%), Positives = 141/267 (52%), Gaps = 9/267 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  +   M+     P  +T  +L+ G CL      +   S+F  ++  G+  ++ +YNI
Sbjct: 421 EAKNVLAMMMKQSIKPDVVTYSSLMDGYCLVN--EVNKAESIFNTMSHRGVTANVQSYNI 478

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN FCK+  V     +   +      PD + ++SLI GLC   RI  A  L  ++   G
Sbjct: 479 MINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRG 538

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P++ITY+++++ LC+  H   A+ L  ++  G G      +P+  TYT ++ GLC+ G
Sbjct: 539 QQPDIITYNSILDALCKKHHVDKAITLLTKL-KGQG-----IRPDMNTYTILVKGLCQSG 592

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+++F  +  K  N DV  Y  +I GFC    ++EA  LL +M + G  PD  T+ 
Sbjct: 593 KLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYE 652

Query: 328 VIMDELCKNGKMDEASRLLELMILRGV 354
           +I+  L +  + D A +LL  MI+RG+
Sbjct: 653 IIILSLFEKDENDMAEKLLREMIMRGL 679


>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 669

 Score =  187 bits (475), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++ +L   + K+  +   +++   + + G  P++ TYN++
Sbjct: 159 DALALLDDMLQ-RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVI 217

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+ GRV     +L R+    F PD V++T+++KGLCA  R  +   LF ++    C
Sbjct: 218 INGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  L+   CR G    A+ + ++M+         C PNT     +I+ +CK+G 
Sbjct: 278 VPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHG------CTPNTTLCNIVINAICKQGR 331

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +    M     NPD ++Y +++ G C A  W  A  LL EM+ +   P+ VTFN 
Sbjct: 332 VDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNT 391

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +++A +L+ELM   G +    T++ L+ GFC+ GRV+ A ELF    ++ 
Sbjct: 392 FICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF---NNLP 448

Query: 389 CKHTVFSY 396
           C+    +Y
Sbjct: 449 CEPNTITY 456



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 86/269 (31%), Positives = 150/269 (55%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +   ++G   D++ YN L+  +C+ GR+     ++  +      PDA  +T +I+GLC
Sbjct: 96  VLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLC 152

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ +A AL   +   GC+P+V+TY+ L+  +C++     A+N+ +EM A G      
Sbjct: 153 DRGRVGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKG------ 206

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+EG VD AKE+  ++      PD+V+Y +++ G C A  W++ 
Sbjct: 207 -CTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDV 265

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EM+D+   P+ VTF++++   C+ G ++ A ++L+ M   G  PNT+  + +++ 
Sbjct: 266 KVLFAEMVDKKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINA 325

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A +   +M   GC     SY
Sbjct: 326 ICKQGRVDDAYDFLNNMGMYGCNPDTISY 354



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 145/292 (49%), Gaps = 9/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T  N++   + K    D        +   G  PD  +Y  ++   C+ GR  H   +
Sbjct: 314 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 373

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R    P+ V F + I  LC +  I +A  L   +  +GC   ++TY+ L++G C 
Sbjct: 374 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 433

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL LF  +          C+PNT+TYTT++ GLC    +D A EL   M  K+ 
Sbjct: 434 QGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDC 484

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             + VT+N L+  FC      EA  L+ +MM+ G  P+++TFN ++D + K+   +EA  
Sbjct: 485 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 544

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  ++ +GV+ +T T+S+++D      R   A ++  +++ MG +  V  Y
Sbjct: 545 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMY 596



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 106/216 (49%), Gaps = 9/216 (4%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD    T LI+ LC   R  +AA +    +A G   +V  Y+TL+ G CR G    A  
Sbjct: 71  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLDAARR 130

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   M            P+  TYT II GLC  G V  A  L   M  +   P VVTY  
Sbjct: 131 LIASMP---------VPPDAYTYTPIIRGLCDRGRVGDALALLDDMLQRGCQPSVVTYTV 181

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+   C ++ + EA  +L EM  +G  P++VT+NVI++ +C+ G++D+A  +L  +   G
Sbjct: 182 LLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDAKEILNRLSSYG 241

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             P+  +++T++ G C   R +  K LF  M    C
Sbjct: 242 FQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKC 277



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 136/285 (47%), Gaps = 9/285 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +  + L + +   G    + TYN L++ FC  GRV     
Sbjct: 383 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 442

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +   C  P+ + +T+L+ GLC   R+  AA L   +    C  N +T++ L++  C
Sbjct: 443 LFNNL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAGMIQKDCPLNAVTFNVLVSFFC 499

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ L  +M          C PN +T+ T++DG+ K+   ++A EL   +  K 
Sbjct: 500 QKGFVEEAMELVNQMMEHG------CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 553

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++ D +TY+S++      +   EA  +L  + D G++P V  +N I+  LCK  + D+A 
Sbjct: 554 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 613

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+  G  PN ST+  L++G    G +  A+ +   + + G
Sbjct: 614 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKG 658



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 68/213 (31%), Positives = 107/213 (50%), Gaps = 9/213 (4%)

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           ++ L A   + EAA L     + G  P+V   + LI  LCR G T  A  +    A  +G
Sbjct: 46  LRRLIARDDLAEAARLVETSSSRGEAPDVYLCTKLIRNLCRRGRTSDAARVL-RTAEASG 104

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                   +   Y T++ G C+ G +D A+ L   M    + PD  TY  +I G C    
Sbjct: 105 A-----PVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPIIRGLCDRGR 156

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             +A  LL +M+ +G QP VVT+ V+++ +CK+    EA  +L+ M  +G  PN  T++ 
Sbjct: 157 VGDALALLDDMLQRGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNV 216

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++G C  GRV+ AKE+   + S G +  + SY
Sbjct: 217 IINGMCREGRVDDAKEILNRLSSYGFQPDIVSY 249



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 9/248 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L          D+ L LF  L      P+  TY  L+   C   R+     +L 
Sbjct: 421 IVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLA 477

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++     +AV F  L+   C +  + EA  L  ++   GC PN+IT++TL++G+ +  
Sbjct: 478 GMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDC 537

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           ++  AL L   + +           +T+TY++++D L +E   ++A ++   ++D  + P
Sbjct: 538 NSEEALELLHGLVSKGVSL------DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRP 591

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V  YN ++   C   + ++A      M+  G  P+  T+ ++++ L   G + EA  +L
Sbjct: 592 KVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVL 651

Query: 347 ELMILRGV 354
             +  +GV
Sbjct: 652 SELYAKGV 659


>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
 gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
          Length = 669

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++ +L   + +   ++  +++   + + G  P++ TYN++
Sbjct: 161 DALSLLDDMLR-RGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 219

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+ GRV     +L R+    F PD V++T+L+KGLCA  R  +   LF ++    C
Sbjct: 220 INGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 279

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  LI   CR G    A+ + E+M          C  NT     +I+ +CK+G 
Sbjct: 280 MPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHG------CATNTTLCNIVINSICKQGR 333

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +L   M     NPD ++Y +++ G C A  W++A  LL EM+     P+ VTFN 
Sbjct: 334 VDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNCPPNEVTFNT 393

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +++A  L+E M   G      T++ L++GFC+ G ++ A ELF    SM 
Sbjct: 394 FICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSALELF---RSMP 450

Query: 389 CKHTVFSY 396
           CK    +Y
Sbjct: 451 CKPNTITY 458



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/287 (33%), Positives = 154/287 (53%), Gaps = 9/287 (3%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           SP  + ++N L     +  H D    L   + S  + PD YTY  LI   C  GRV+   
Sbjct: 107 SPVDVFAYNTLVAGYCRYGHLDAARRL---IGSMPVAPDAYTYTPLIRVLCDRGRVADAL 163

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +L  +LR    P+ V +T L++ +C  S   +A A+  +++A GC PN++TY+ +ING+
Sbjct: 164 SLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 223

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A  L   + +    +G   +P+TV+YTT++ GLC     D  +ELF +M +K
Sbjct: 224 CREGRVDDARELLNRLPS----YGF--QPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 277

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N  P+ VT++ LI  FC       A  +L +M + G   +    N++++ +CK G++D+A
Sbjct: 278 NCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVDDA 337

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            +LL  M   G NP+T +++T++ G C   R + AKEL   M    C
Sbjct: 338 FKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRNNC 384



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 145/269 (53%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +    +G   D++ YN L+  +C+ G +     ++G +      PDA  +T LI+ LC
Sbjct: 98  VLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLC 154

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ +A +L   +   GC+PNV+TY+ L+  +CR      A+ + +EM A G      
Sbjct: 155 DRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCRNSGFEQAMAVLDEMRAKG------ 208

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+EG VD A+EL  ++      PD V+Y +L+ G C +  W++ 
Sbjct: 209 -CTPNIVTYNVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDV 267

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EMM++   P+ VTF++++   C+ G ++ A ++LE M   G   NT+  + +++ 
Sbjct: 268 EELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINS 327

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A +L   M S GC     SY
Sbjct: 328 ICKQGRVDDAFKLLNDMGSYGCNPDTISY 356



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 89/286 (31%), Positives = 146/286 (51%), Gaps = 9/286 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++   + K    D    L   + S G  PD  +Y  ++   C+  R      +L  ++R
Sbjct: 322 NIVINSICKQGRVDDAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVR 381

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
           +   P+ V F + I  LC +  I +A  L  ++   GC   V+TY+ L+NG C  GH   
Sbjct: 382 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDS 441

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF  M          CKPNT+TYTT++ GLC    +D A EL  +M   +  P+VVT
Sbjct: 442 ALELFRSMP---------CKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVT 492

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N L+  FC      EA  L+ +MM+ G  P+++T+N ++D + K+   ++A  LL  ++
Sbjct: 493 FNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLV 552

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +GV+P+  TFS+++       R+  A +LF  ++ +G +     Y
Sbjct: 553 SKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVY 598



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 11/286 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +  + L ++++  G    + TYN L+N FC  G +     
Sbjct: 385 PPNEVTFNTFICILCQKGLIEQAIMLIEQMSEHGCTVGVVTYNALVNGFCVQGHIDSAL- 443

Query: 164 VLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
               + RS    P+ + +T+L+ GLC   R+  AA L  ++    C PNV+T++ L++  
Sbjct: 444 ---ELFRSMPCKPNTITYTTLLTGLCNAERLDGAAELVAEMLRGDCPPNVVTFNVLVSFF 500

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A+ L E+M          C PN +TY T++DG+ K+   + A EL   +  K
Sbjct: 501 CQKGFLEEAIELVEQMMEHG------CTPNLITYNTLLDGITKDCSSEDALELLHGLVSK 554

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            ++PDV+T++S+I      +   EA  L   + D G++P  V +N I+  LCK  ++D A
Sbjct: 555 GVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRPKAVVYNKILLGLCKRCEIDNA 614

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                 M+  G  PN ST+  L++G    G +  A++L   + S G
Sbjct: 615 IDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLLSVLCSRG 660



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 72/216 (33%), Positives = 108/216 (50%), Gaps = 9/216 (4%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD    T LI+ LC   R  +AA +    +  G   +V  Y+TL+ G CR GH   A  
Sbjct: 73  APDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARR 132

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   M            P+  TYT +I  LC  G V  A  L   M  +   P+VVTY  
Sbjct: 133 LIGSMP---------VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVVTYTV 183

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+   C  + + +A  +L EM  +G  P++VT+NVI++ +C+ G++D+A  LL  +   G
Sbjct: 184 LLEAMCRNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARELLNRLPSYG 243

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             P+T +++TL+ G C + R +  +ELF  M    C
Sbjct: 244 FQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 279



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 122/248 (49%), Gaps = 9/248 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L        H D+ L LF+ +      P+  TY  L+   C   R+     ++ 
Sbjct: 423 VVTYNALVNGFCVQGHIDSALELFRSMPCK---PNTITYTTLLTGLCNAERLDGAAELVA 479

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +LR    P+ V F  L+   C +  + EA  L  ++   GC PN+ITY+TL++G+ +  
Sbjct: 480 EMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTLLDGITKDC 539

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            +  AL L   + +     GV   P+ +T+++II  L KE  +++A +LF  ++D  + P
Sbjct: 540 SSEDALELLHGLVSK----GV--SPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIGMRP 593

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
             V YN ++ G C   + + A      M+  G  P+  T+ ++++ L   G + EA  LL
Sbjct: 594 KAVVYNKILLGLCKRCEIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEAQDLL 653

Query: 347 ELMILRGV 354
            ++  RGV
Sbjct: 654 SVLCSRGV 661



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 35/67 (52%)

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  PDV     ++  LC+ G+  +A+R+L      G   +   ++TL+ G+C  G ++ A
Sbjct: 71  GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130

Query: 378 KELFVSM 384
           + L  SM
Sbjct: 131 RRLIGSM 137


>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
          Length = 795

 Score =  187 bits (475), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 173/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +F  M+  +  PP + ++N L   L K +  D  +++ + +   G+ PD  TYNI
Sbjct: 217 DKAYFLFHEMMG-QGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNI 275

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  +C +G++     +L ++  S   PD V ++ LI+  C   R  EA ++F  +   G
Sbjct: 276 MIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKG 335

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVVCK-- 250
            KPN   Y  L++G    G  I   +L + M                    K G V K  
Sbjct: 336 QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 395

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V+Y+T+I  LCK G V+ A   F QM  + ++P+++++ SLIHG 
Sbjct: 396 TAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGL 455

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   +W +   L  EM+++G+ PD +  N IMD LCK G++ EA    +++I  GV P+ 
Sbjct: 456 CSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDV 515

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++TL+DG+C  G+++ + +    M S+G +   ++Y
Sbjct: 516 VSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTY 553



 Score =  181 bits (458), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 118/335 (35%), Positives = 175/335 (52%), Gaps = 20/335 (5%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKT---- 120
            LE+ +  R +S   G        +A  +FD +L  +  P  + +FN +   +A+     
Sbjct: 14  ELERIILNRHRSGSLG------REDALNLFDELLP-QARPASVHAFNSVLTVVARADSSS 66

Query: 121 --KHYDTV-LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
             +H   + +SLF  +  +G+        ILI CFC +GR+   F      L++ +    
Sbjct: 67  SPRHSAALAVSLFNTMVRSGVNMMAAIIGILIRCFCTVGRLDLAFAAFALFLKTGWRVQN 126

Query: 178 VAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           V    LIKGLC  +R  +A  + F ++   G  P+V +Y+ LI GLC    +  AL L  
Sbjct: 127 VTLNQLIKGLCDGNRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLI 186

Query: 237 EM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            M A+G    G  C PN V+Y T+IDG  KEG VDKA  LF +M  + + PDVVTYNSLI
Sbjct: 187 HMTADG----GYNCSPNVVSYNTVIDGFFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLI 242

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            G C A   ++A  +L  M D+GV PD  T+N+++   C  G+++EA RLL+ M   G+ 
Sbjct: 243 DGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSGSGLQ 302

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           P+  T+S L+  +C  GR   A+ +F SM   G K
Sbjct: 303 PDVVTYSLLIQYYCKIGRCAEARSVFDSMVRKGQK 337



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 157/328 (47%), Gaps = 41/328 (12%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    +FN+L    AK    D  ++ F  +   GL PD+ +Y+ +I+  CK GRV     
Sbjct: 372 PFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVY 431

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCA---------------------------------- 189
              +++    +P+ ++FTSLI GLC+                                  
Sbjct: 432 HFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLC 491

Query: 190 -ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E R++EA   F  +   G KP+V++Y+TLI+G C  G    ++   + M +      + 
Sbjct: 492 KEGRVVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVS------IG 545

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +P++ TY ++++G  K G V+ A  L+ +M  K++    +T N ++HG   A     A 
Sbjct: 546 LRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAAR 605

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L ++M+D+G Q  + T+N ++  LC+N  +DEA R+ E +  +    +  TFS +++  
Sbjct: 606 ELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVRTFSIVINAL 665

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GR++ AK LF +M   G    V +Y
Sbjct: 666 LKVGRIDEAKSLFSAMVLRGPVPDVITY 693



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 153/308 (49%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+     P       LL G   K    D V  L   +   G+  +   +NIL
Sbjct: 323 EARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID-VRDLLDLMIRDGIPFEHRAFNIL 381

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G V         + ++   PD V+++++I  LC   R+ +A   F ++ + G 
Sbjct: 382 ICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKTGRVEDAVYHFNQMVSEGL 441

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+I++++LI+GLC  G       L  EM N          P+ +   TI+D LCKEG 
Sbjct: 442 SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG------IHPDAIFMNTIMDNLCKEGR 495

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A++ F  +    + PDVV+YN+LI G+C+    +E+   L  M+  G++PD  T+N 
Sbjct: 496 VVEAQDFFDMVIHIGVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNS 555

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++   KNG++++A  L   M  + V     T + ++ G    GR+  A+EL++ M   G
Sbjct: 556 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRG 615

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 616 TQLRIETY 623



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 7/277 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   FD ++++    P + S+N L          D  +    R+ S GL PD +TYN L
Sbjct: 498 EAQDFFDMVIHI-GVKPDVVSYNTLIDGYCFVGKMDESIKQLDRMVSIGLRPDSWTYNSL 556

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N + K GRV     +   + R      A+    ++ GL    RI+ A  L+ K+   G 
Sbjct: 557 LNGYFKNGRVEDALALYREMFRKDVKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGT 616

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +  + TY+T++ GLC       AL +FE++ +   +  V       T++ +I+ L K G 
Sbjct: 617 QLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVR------TFSIVINALLKVGR 670

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+AK LF  M  +   PDV+TY+ +I          E++ L + M   G   D    N+
Sbjct: 671 IDEAKSLFSAMVLRGPVPDVITYSLMIKSHIEEGLLEESDNLFLSMEKNGCAADSHMLNI 730

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           I+  L + G +  A   L  +  +  +   ST + L+
Sbjct: 731 IVRRLLEKGDVRRAGTYLTKIDEKNFSLEASTAALLI 767


>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
 gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
          Length = 440

 Score =  187 bits (474), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/310 (37%), Positives = 162/310 (52%), Gaps = 11/310 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +++ M+    SP  +T   LL G   K    D  L +F      G  PD+ TYN 
Sbjct: 27  SDAQALYERMIKAGYSPDVVTYNTLLHG-FCKVGELDEALKIFDGAVKRGFVPDVVTYNA 85

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FCK  ++     +L R++     PD V + SL+ GLC   R+ EA  L    K F 
Sbjct: 86  LINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCKNGRVDEARMLIVD-KGF- 143

Query: 208 CKPNVITYSTLINGLCRTGHTIV-ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             PNVITYSTLI+GLCR    +  AL LF  +     K G   +P   TY  +IDGL KE
Sbjct: 144 -SPNVITYSTLISGLCRELRGVSEALKLFGSVL----KQGY--EPEVPTYNILIDGLLKE 196

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V++A ELF  +    + PD +TY   I G C A    +A  +L +M ++G  PDVV+ 
Sbjct: 197 DRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSH 256

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N +++ LCK  ++DEA  LL  M  +G +PN  +F+TL+ G C  G+   A   F  M  
Sbjct: 257 NAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLK 316

Query: 387 MGCKHTVFSY 396
            G K TV +Y
Sbjct: 317 RGVKPTVVTY 326



 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 174/380 (45%), Gaps = 78/380 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IFD  +  R   P + ++N L     K    D    + +R+ S  L PD+ TYN 
Sbjct: 62  DEALKIFDGAVK-RGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNS 120

Query: 148 LINCFCKMGRV---------------------------------SHGFVVLGRILRSCFT 174
           L+N  CK GRV                                 S    + G +L+  + 
Sbjct: 121 LVNGLCKNGRVDEARMLIVDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYE 180

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P+   +  LI GL  E R+ EA  LF+ L   G +P+ ITY+  I+GLC+ G    AL +
Sbjct: 181 PEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDALLM 240

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            ++M          C P+ V++  +I+GLCKE  VD+A+ L   M+ K  +P+ +++N+L
Sbjct: 241 LKDMDEKG------CVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFNTL 294

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQP--------------------------------- 321
           I G C A  W +A     EM+ +GV+P                                 
Sbjct: 295 ICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIE 354

Query: 322 -----DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
                DVVT++ ++D L K GK+D+A RLL  M  +G  PN  T+++L+ G C   +V+ 
Sbjct: 355 KGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDE 414

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A ELFV+M   GC     +Y
Sbjct: 415 ALELFVAMVEKGCVPDTITY 434



 Score =  177 bits (450), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 106/281 (37%), Positives = 153/281 (54%), Gaps = 10/281 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  +L  +   P + ++N+L   L K    +    LF  L   GL PD  TY +
Sbjct: 165 SEALKLFGSVLK-QGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTV 223

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+  CK GRV    ++L  +      PD V+  ++I GLC E R+ EA  L + ++A G
Sbjct: 224 FIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKG 283

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK-- 265
           C PN I+++TLI G CR G    A+  F+EM     K GV  KP  VTY  ++DGLCK  
Sbjct: 284 CSPNAISFNTLICGQCRAGKWKKAMTTFKEML----KRGV--KPTVVTYNILVDGLCKAR 337

Query: 266 -EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
            EG + +A  LF  M +K   PDVVTY++LI G   A   ++A  LL  M  +G  P+V 
Sbjct: 338 QEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVY 397

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           T+N ++  LC   K+DEA  L   M+ +G  P+T T+ T++
Sbjct: 398 TYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTII 438



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 154/293 (52%), Gaps = 10/293 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L          +L++R+   G  PD+ TYN L++ FCK+G +     +
Sbjct: 8   PNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKI 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               ++  F PD V + +LI G C   ++ EA  +  ++ +    P+V+TY++L+NGLC+
Sbjct: 68  FDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSENLVPDVVTYNSLVNGLCK 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-GFVDKAKELFLQMKDKN 283
            G    A  L  +             PN +TY+T+I GLC+E   V +A +LF  +  + 
Sbjct: 128 NGRVDEARMLIVDKG---------FSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQG 178

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+V TYN LI G    +  NEA  L   ++  G++PD +T+ V +D LCK G++++A 
Sbjct: 179 YEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKAGRVEDAL 238

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L+ M  +G  P+  + + +++G C   RV+ A+ L   ME+ GC     S+
Sbjct: 239 LMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISF 291



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 146/265 (55%), Gaps = 10/265 (3%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +   G +P+  TYN L++  C  GR+S    +  R++++ ++PD V + +L+ G C    
Sbjct: 1   MRKHGFWPNRITYNALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGE 60

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + EA  +F      G  P+V+TY+ LING C+      A  + + M + N        P+
Sbjct: 61  LDEALKIFDGAVKRGFVPDVVTYNALINGFCKADKLDEAQRILQRMVSEN------LVPD 114

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA-NDWNEANCLL 311
            VTY ++++GLCK G VD+A+ L +   DK  +P+V+TY++LI G C      +EA  L 
Sbjct: 115 VVTYNSLVNGLCKNGRVDEARMLIV---DKGFSPNVITYSTLISGLCRELRGVSEALKLF 171

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             ++ QG +P+V T+N+++D L K  +++EA  L   ++  G+ P+  T++  +DG C  
Sbjct: 172 GSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGLCKA 231

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           GRV  A  +   M+  GC   V S+
Sbjct: 232 GRVEDALLMLKDMDEKGCVPDVVSH 256



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTV---LSLFKRLNST 136
           G   A    +A   F  ML  R   P + ++N+L   L K +    +   ++LF  +   
Sbjct: 297 GQCRAGKWKKAMTTFKEMLK-RGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEK 355

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD+ TY+ LI+   K G++     +LG +      P+   + SLI GLC   ++ EA
Sbjct: 356 GRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEA 415

Query: 197 AALFTKLKAFGCKPNVITYSTLIN 220
             LF  +   GC P+ ITY T+I+
Sbjct: 416 LELFVAMVEKGCVPDTITYGTIIS 439


>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
 gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
          Length = 614

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 159/296 (53%), Gaps = 7/296 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML  R  PP + +FN L   + K    ++  +L   +   G+ PD+YTY   +   
Sbjct: 266 MFDEMLR-RGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGL 324

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     +   +      P+ V FT+LI   C E  +     L  ++   G K ++
Sbjct: 325 CKAGRIQDAVEMFEEMRERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDL 384

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+ L NGLCR      A ++ EEM N NG      KP+ VTYTT+IDG CKEG +D A
Sbjct: 385 VAYNALANGLCRVRDLKAANDIVEEMRN-NG-----LKPDKVTYTTLIDGFCKEGELDMA 438

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            E+  +M D+ +  D VTY +LI G   +    ++  +L EMM+ G++PD  T+ +++D 
Sbjct: 439 MEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDA 498

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            CKN  +    +LL+ M  +G  P   T++ +M+GFC+ G++ +A  L  +M ++G
Sbjct: 499 FCKNSDVKTGFKLLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIG 554



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 159/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+  +  +L+    PP    FN+L   + ++    +  ++F  +   G+ P + T+N L
Sbjct: 227 EAYAFYLQLLDAG-VPPEAKQFNMLMRDMIRSGKLASARNMFDEMLRRGVPPTVVTFNTL 285

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK   ++    + G + ++   PD   + + ++GLC   RI +A  +F +++  G 
Sbjct: 286 MSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVEMFEEMRERGV 345

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN + ++TLI+  C+ G+    L L  EMA          K + V Y  + +GLC+   
Sbjct: 346 NPNTVVFTTLIDAHCKEGNVAAGLELHREMATRG------IKTDLVAYNALANGLCRVRD 399

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A ++  +M++  + PD VTY +LI GFC   + + A  +  EM D+GV  D VT+  
Sbjct: 400 LKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTT 459

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K+G+  ++ R+L  M+  G+ P+ +T++ ++D FC    V    +L   M++ G
Sbjct: 460 LISGLSKSGRSVDSERILCEMMEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519

Query: 389 CKHTVFSY 396
            K  V +Y
Sbjct: 520 RKPGVVTY 527



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 44/295 (14%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+   L  ++ L+N   ++  V   +    ++L +   P+A  F  L++ +    ++  A
Sbjct: 207 GVRVPLPAWSDLMN---RLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRDMIRSGKLASA 263

Query: 197 AALFTKLKAFGCKPNVITYSTLIN-----------------------------------G 221
             +F ++   G  P V+T++TL++                                   G
Sbjct: 264 RNMFDEMLRRGVPPTVVTFNTLMSGMCKASDLNSANALRGLMAKAGVAPDVYTYGAFMQG 323

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+ G    A+ +FEEM     + GV   PNTV +TT+ID  CKEG V    EL  +M  
Sbjct: 324 LCKAGRIQDAVEMFEEMR----ERGV--NPNTVVFTTLIDAHCKEGNVAAGLELHREMAT 377

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + I  D+V YN+L +G C   D   AN ++ EM + G++PD VT+  ++D  CK G++D 
Sbjct: 378 RGIKTDLVAYNALANGLCRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDM 437

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  + + M   GV  +  T++TL+ G   +GR   ++ +   M   G +    +Y
Sbjct: 438 AMEMKQEMSDEGVALDEVTYTTLISGLSKSGRSVDSERILCEMMEAGLEPDNTTY 492


>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 677

 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/308 (34%), Positives = 173/308 (56%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF  ML+ R   P L SF+ L G  ++  H D  L  F+ + ++GL PD   Y IL
Sbjct: 308 EAKDIFSDMLH-RGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTIL 366

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +C+ G +S    +  ++L      D VA+ +++ GLC +  + +A ALF ++   G 
Sbjct: 367 INGYCRNGMMSEALEIRDKMLEQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGV 426

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+  T++TLI+G C+ G+   AL+LF  M   N       KP+ VTY  +IDG CK   
Sbjct: 427 VPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKN------IKPDIVTYNILIDGFCKTTE 480

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KA EL+ +M  + I P+ ++Y  L++G+C     +EA  L  EM+ +G++P +VT N 
Sbjct: 481 MEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGIKPTLVTCNT 540

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C++G + +A   L  MI  GV P++ T++TL++GF     ++ A  L   ME+ G
Sbjct: 541 VIKGYCRSGDLSKADEFLGKMISEGVGPDSITYNTLINGFVKGEYMDKAFFLINKMETKG 600

Query: 389 CKHTVFSY 396
            +  V +Y
Sbjct: 601 LQPDVVTY 608



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 162/304 (53%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ ML++  SP   T++N L     +  ++     +F  +   G+ PDL +++ LI   
Sbjct: 277 VFNEMLSIGLSPDT-TTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVS 335

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            + G +    +    +  S   PD V +T LI G C    + EA  +  K+   GC  +V
Sbjct: 336 SRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDV 395

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+T++NGLC+      A  LF+EM     + GVV  P+  T+TT+I G CKEG + KA
Sbjct: 396 VAYNTILNGLCKKKLLADANALFDEMV----ERGVV--PDFCTFTTLIHGHCKEGNMGKA 449

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             LF  M  KNI PD+VTYN LI GFC   +  +AN L  EM+ + + P+ +++ ++++ 
Sbjct: 450 LSLFGIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNG 509

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C  G + EA RL + MI +G+ P   T +T++ G+C +G ++ A E    M S G    
Sbjct: 510 YCNLGFVSEAFRLWDEMIRKGIKPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVGPD 569

Query: 393 VFSY 396
             +Y
Sbjct: 570 SITY 573



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M + +   P L ++N +   L K   Y     +F  + S GL PD  TYN L
Sbjct: 238 EAFEVMNSM-SGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTL 296

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+         +   +L    +PD ++F+SLI        + +A   F  +K  G 
Sbjct: 297 LVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGL 356

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ + Y+ LING CR G    AL + ++M          C  + V Y TI++GLCK+  
Sbjct: 357 VPDNVIYTILINGYCRNGMMSEALEIRDKMLEQG------CALDVVAYNTILNGLCKKKL 410

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M ++ + PD  T+ +LIHG C   +  +A  L   M  + ++PD+VT+N+
Sbjct: 411 LADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNI 470

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK  +M++A+ L   MI R + PN  +++ L++G+C  G V+ A  L+  M   G
Sbjct: 471 LIDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKG 530

Query: 389 CKHTVFS 395
            K T+ +
Sbjct: 531 IKPTLVT 537



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 144/280 (51%), Gaps = 6/280 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L     +         +   ++  GL P L+TYN +IN  CK GR      V  
Sbjct: 220 IVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVRAKGVFN 279

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L    +PD   + +L+   C  +  +EA  +F+ +   G  P++I++S+LI    R G
Sbjct: 280 EMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSSRNG 339

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           H   AL  F +M       G+V  P+ V YT +I+G C+ G + +A E+  +M ++    
Sbjct: 340 HLDQALMYFRDMKTS----GLV--PDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCAL 393

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVV YN++++G C      +AN L  EM+++GV PD  TF  ++   CK G M +A  L 
Sbjct: 394 DVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMGKALSLF 453

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +M  + + P+  T++ L+DGFC T  +  A EL+  M S
Sbjct: 454 GIMTQKNIKPDIVTYNILIDGFCKTTEMEKANELWNEMIS 493



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/270 (30%), Positives = 139/270 (51%), Gaps = 9/270 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+  R   P   +F  L     K  +    LSLF  +    + PD+ TYNIL
Sbjct: 413 DANALFDEMVE-RGVVPDFCTFTTLIHGHCKEGNMGKALSLFGIMTQKNIKPDIVTYNIL 471

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK   +     +   ++     P+ +++  L+ G C    + EA  L+ ++   G 
Sbjct: 472 IDGFCKTTEMEKANELWNEMISRKIFPNHISYAILVNGYCNLGFVSEAFRLWDEMIRKGI 531

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           KP ++T +T+I G CR+G    A     +M + G G       P+++TY T+I+G  K  
Sbjct: 532 KPTLVTCNTVIKGYCRSGDLSKADEFLGKMISEGVG-------PDSITYNTLINGFVKGE 584

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           ++DKA  L  +M+ K + PDVVTYN +++GFC      EA  +L +M+++G+ PD  T+ 
Sbjct: 585 YMDKAFFLINKMETKGLQPDVVTYNVILNGFCRQGRMQEAELILRKMIERGIDPDRSTYT 644

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPN 357
            +++       + EA R  + M+ RG  P+
Sbjct: 645 TLINGYVSQDNLKEAFRFHDEMLQRGFVPD 674



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 171/377 (45%), Gaps = 21/377 (5%)

Query: 24  FSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKER-CKSSGQGDI 82
           +  +  + + P    + + P D     K+  +LR     R S  Q L  R  + SG   +
Sbjct: 39  YLHTLENCQNPNQEPTSSAPPDSFLVEKILLNLRRVRSKRLSDAQTLILRMIRRSGVSRV 98

Query: 83  T---AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
               ++    + C  D ++           F+LL     + +  +     FK L   G  
Sbjct: 99  EIVESLISMSSTCGVDNLV-----------FDLLIRSYVQARKLNEGTDTFKILRRKGFL 147

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
             +   N L+    KMG V   + V   I RS    +      ++  LC + +I +    
Sbjct: 148 VSINACNSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPF 207

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              ++  G   +++TY+TLIN  CR G    A   FE M + +GK     KP   TY  +
Sbjct: 208 LIDMEQKGIFADIVTYNTLINAYCREGLLGEA---FEVMNSMSGKG---LKPTLFTYNAV 261

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLCK+G   +AK +F +M    ++PD  TYN+L+   C  N++ EA  +  +M+ +GV
Sbjct: 262 INGLCKKGRYVRAKGVFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGV 321

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD+++F+ ++    +NG +D+A      M   G+ P+   ++ L++G+C  G ++ A E
Sbjct: 322 SPDLISFSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALE 381

Query: 380 LFVSMESMGCKHTVFSY 396
           +   M   GC   V +Y
Sbjct: 382 IRDKMLEQGCALDVVAY 398



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/321 (28%), Positives = 144/321 (44%), Gaps = 41/321 (12%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L G L K    D    ++  +  +G+  ++YT NI++N  CK  ++      L  + +
Sbjct: 154 NSLLGGLVKMGWVDLAWEVYNEIARSGIELNVYTLNIMVNALCKDHKIDDVKPFLIDMEQ 213

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                D V + +LI   C E  + EA  +   +   G KP + TY+ +INGLC+ G  + 
Sbjct: 214 KGIFADIVTYNTLINAYCREGLLGEAFEVMNSMSGKGLKPTLFTYNAVINGLCKKGRYVR 273

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC-------------------------- 264
           A  +F EM        +   P+T TY T++   C                          
Sbjct: 274 AKGVFNEM------LSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLIS 327

Query: 265 ---------KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
                    + G +D+A   F  MK   + PD V Y  LI+G+C     +EA  +  +M+
Sbjct: 328 FSSLIGVSSRNGHLDQALMYFRDMKTSGLVPDNVIYTILINGYCRNGMMSEALEIRDKML 387

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           +QG   DVV +N I++ LCK   + +A+ L + M+ RGV P+  TF+TL+ G C  G + 
Sbjct: 388 EQGCALDVVAYNTILNGLCKKKLLADANALFDEMVERGVVPDFCTFTTLIHGHCKEGNMG 447

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF  M     K  + +Y
Sbjct: 448 KALSLFGIMTQKNIKPDIVTY 468


>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
 gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
          Length = 702

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 113/341 (33%), Positives = 168/341 (49%), Gaps = 43/341 (12%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A+  F +  N         +  +L     K K ++    L K       FP+   Y 
Sbjct: 56  PDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAKRHEEAHRLLKEELEPLCFPNEIMYT 115

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +IN FCK G+V   F +L  +       D +  ++LI+GLC + RI EA     + K+ 
Sbjct: 116 TVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA---LEQFKSM 172

Query: 207 G--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG-NGKFGVVCKPNTVTYTTIIDGL 263
           G  C PNVITY+T++NGLC+      AL LF++M        G  C+P+ ++Y+T+ID L
Sbjct: 173 GEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHG--CEPDVISYSTVIDAL 230

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC------------------------ 299
           CK   VDKA E F +M+     P+VVTY+SLI G C                        
Sbjct: 231 CKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINI 290

Query: 300 ----------YANDWNEANCLLIE-MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
                     + ND  E  C   E ++  G +P+VVT+NV +  LCK G++DEA R+L  
Sbjct: 291 IDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLE 350

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           M+   V P+  T+S+++DGFC  GR++ A ++F  M    C
Sbjct: 351 MVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHEC 391



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 150/303 (49%), Gaps = 10/303 (3%)

Query: 88  NEAFCIFDYMLNMRPS----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           +EA  +FD M     +     P + S++ +   L K +  D     FKR+ + G  P++ 
Sbjct: 197 DEALELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 256

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY+ LI+  CK+ R S    +L  +    F  + + F +++  L       +A   F +L
Sbjct: 257 TYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERL 316

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G KPNV+TY+  ++GLC+ G    A  +  EM            P+ +TY++IIDG 
Sbjct: 317 LKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESK------VTPDVITYSSIIDGF 370

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +DKA ++F +M      P  VT+ +L+HGF       EA  +  +M++ G  P +
Sbjct: 371 CKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGL 430

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+NV+MD +C    ++ A  +   M  +   P+ +T++ L+   C   RV+ AKE    
Sbjct: 431 QTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDV 490

Query: 384 MES 386
           ME+
Sbjct: 491 MEA 493



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 99/333 (29%), Positives = 154/333 (46%), Gaps = 38/333 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF + D M         L    L+ G L +    D  L  FK +      P++ TYN 
Sbjct: 128 DQAFELLDEMKERGVKMDVLLHSTLIQG-LCRKGRIDEALEQFKSMGEE-CSPNVITYNT 185

Query: 148 LINCFCKMGRVSHGFVVLGRILR------SCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           ++N  CK  R+     +   + +       C  PD ++++++I  LC   R+ +A   F 
Sbjct: 186 VVNGLCKANRIDEALELFDDMEKRYEASHGC-EPDVISYSTVIDALCKAQRVDKAYEYFK 244

Query: 202 KLKAFGCKPNVITYSTLINGLCRT------------------GHTIVALNLFEEMANGNG 243
           +++A GC PNV+TYS+LI+GLC+                   G  I+  N        N 
Sbjct: 245 RMRAVGCAPNVVTYSSLIDGLCKVDRPSECLELLLHMKEKGFGINIIDFNAMLHALWKND 304

Query: 244 KFGVVC-----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +    C           KPN VTY   + GLCK G VD+A  + L+M +  + PDV+TY+
Sbjct: 305 EQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYS 364

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           S+I GFC A   ++A+ +   MM     P  VTF  ++    ++ K  EA R+ E M+  
Sbjct: 365 SIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNA 424

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           G  P   T++ LMD  C    V  A E++  M+
Sbjct: 425 GFIPGLQTYNVLMDCVCGADSVESALEIYHKMK 457



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 155/351 (44%), Gaps = 61/351 (17%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  FN +   L K    +     F+RL  +G  P++ TYN+ ++  CK GRV   + +L 
Sbjct: 290 IIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGRVDEAYRILL 349

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++ S  TPD + ++S+I G C   R+ +A  +FT++    C P+ +T+ TL++G     
Sbjct: 350 EMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHK 409

Query: 227 HTIVALNLFEEMANG---------NGKFGVVC--------------------KPNTVTYT 257
            +  A  + E+M N          N     VC                    +P+  TY 
Sbjct: 410 KSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYA 469

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +I  LC+   VD+AKE    M+  N+ P+    ++L+   C   + +EA  +L  +++ 
Sbjct: 470 PLIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEV 529

Query: 318 GVQP--------------------------------DVVTFNVIMDELCKNGKMDEASRL 345
           G QP                                D  T+++ + E+CK GK DEA  +
Sbjct: 530 GCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEICKAGKPDEAVEV 589

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +E M+L+GV P+  T+  ++   C   RV  A   F  M S GC   + +Y
Sbjct: 590 IEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTY 640



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 120/277 (43%), Gaps = 10/277 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF + + M+N     P L ++N+L  C+      ++ L ++ ++      PD  TY  
Sbjct: 412 REAFRVHEDMVNA-GFIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKRQPDCNTYAP 470

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI C C+  RV      L  +      P+     +L++ LC +  + EA ++   +   G
Sbjct: 471 LIQCLCRARRVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEACSVLDNVVEVG 530

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P   T+  L+  L        A  L           G V   +  TY+  +  +CK G
Sbjct: 531 CQPLGETFKILVEELYLRKKWEAASKLLRSP-------GFV--ADAATYSLCVAEICKAG 581

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A E+  QM  K + PD  TY +++   C  +    A     +M  +G  P +VT+ 
Sbjct: 582 KPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLVTYT 641

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +++ E C     DEA R+ E M+  G  P   T  TL
Sbjct: 642 LLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRTL 678



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 129/296 (43%), Gaps = 10/296 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M+     P P+T   LL G  ++ K       + + + + G  P L TYN+L++C 
Sbjct: 382 VFTRMMVHECIPHPVTFMTLLHG-FSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 440

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C    V     +  ++ R    PD   +  LI+ LC   R+ EA      ++A    PN 
Sbjct: 441 CGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 500

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
                L+  LC+ G    A ++ + +        V C+P   T+  +++ L      + A
Sbjct: 501 AICHALVEVLCKQGEVDEACSVLDNVVE------VGCQPLGETFKILVEELYLRKKWEAA 554

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L   ++      D  TY+  +   C A   +EA  ++ +M+ +GV+PD  T+  ++  
Sbjct: 555 SKL---LRSPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRS 611

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LC   +++ A    E M  RG  P   T++ L+   C     + A  +F +M + G
Sbjct: 612 LCGLDRVESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAG 667


>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
          Length = 742

 Score =  186 bits (473), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 165/321 (51%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N     L +  H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     PD   F +LI  LC  +R+ EA  L  ++   G  P+V T++ LIN LC+
Sbjct: 344 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403

Query: 225 TGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTVT 255
            G   +AL LFEEM N                    GK G             C  +T+T
Sbjct: 404 VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 463

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y TIIDGLCK+  +++A+E+F QM  + I+ + +T+N+LI G C     ++A  L+ +M+
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMI 523

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+QP+ +T+N I+   CK G + +A+ +LE M   G   +  T+ TL++G C  GR  
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A ++   M   G + T  +Y
Sbjct: 584 VALKVLRGMRIKGMRPTPKAY 604



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G 
Sbjct: 172 MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 231

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     V  R+L    +   V    LI G C   R+ +A     +  A G +P+ ITY+T
Sbjct: 232 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 291

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            +NGLC+  H   AL + + M            P+  TY  +++ LCK G +++AK +  
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM D+   PD+ T+N+LI   C  N   EA  L  ++  +GV PDV TFN++++ LCK G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               A RL E M   G  P+  T++TL+D  C  G++  A +L   MES GC  +  +Y
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 160/309 (51%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M++ R   P +T+FN L   L      +  L L +++   G+ PD+YT+NIL
Sbjct: 339 EAKGILNQMVD-RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G       +   +  S  TPD V + +LI  LC+  ++ +A  L   +++ GC
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             + ITY+T+I+GLC+      A  +F++M   G  +       N +T+ T+IDGLCK+ 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR-------NAITFNTLIDGLCKDK 510

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  QM  + + P+ +TYNS++  +C   D  +A  +L  M   G + DVVT+ 
Sbjct: 511 KIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 570

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK G+   A ++L  M ++G+ P    ++ ++        +  A  LF  M  +
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 631 GEPPDALTY 639



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 29/250 (11%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D V +  L+  L   S++    ++++++ A G KP+V+T++TL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 236 EEMA---------------NGNGKFGVV--------------CKPNTVTYTTIIDGLCKE 266
           EEM+                G  + G +              C    VT   +I+G CK 
Sbjct: 205 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 264

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+ A     Q       PD +TYN+ ++G C  +    A  ++  M+ +G  PDV T+
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N++++ LCKNG+++EA  +L  M+ RG  P+ +TF+TL+   C   R+  A +L   +  
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 384

Query: 387 MGCKHTVFSY 396
            G    V+++
Sbjct: 385 KGVSPDVYTF 394



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 8/262 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFG 517

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ +++     P+ + + S++   C +  I +AA +   + A G + +V+TY TLINGLC
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL +   M           +P    Y  ++  L +   +  A  LF +M +  
Sbjct: 578 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD +TY  +  G C       EA   ++EM+D+G  P+  +F ++ + L   G  D  
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 691

Query: 343 SRLLELMILRGVNPNTSTFSTL 364
            R +E+ I+  V+   S  S +
Sbjct: 692 IRAIEI-IMEKVDLRESDVSAI 712



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           PD  A   ++    A         ++ ++ +  G    +     L+  + R GH +    
Sbjct: 52  PDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQV---- 107

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTY 291
                     K GVV         + +D    +   D A +L L        I  D V Y
Sbjct: 108 ----------KLGVV--------HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVY 149

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N L++     +       +  EM  +G++PDVVTFN +M  LC+  ++  A  +LE M  
Sbjct: 150 NHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSS 209

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           RGV P+ +TF+TLM GF   G +  A  +   M  MGC  T
Sbjct: 210 RGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           FG+  + +TV Y  +++ L +   +   + ++ +M  + I PDVVT+N+L+   C A+  
Sbjct: 140 FGI--QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 197

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  +L EM  +GV PD  TF  +M    + G ++ A R+   M+  G +    T + L
Sbjct: 198 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 257

Query: 365 MDGFCLTGRVNHA 377
           ++G+C  GRV  A
Sbjct: 258 INGYCKLGRVEDA 270


>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Brachypodium distachyon]
          Length = 651

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 160/281 (56%), Gaps = 6/281 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN+L G   +    +  L  +K +    + PD+ +++ LI  F + G + H    
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD V +T +I G C    ++EA  +  ++ AFGC P+V+TY+TL+NGLC+
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCK 381

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  L+  EE+ N   + GV   P+  T+TT+I G C++G ++KA + F  + D+ +
Sbjct: 382 ERR----LSDAEELLNEMKERGV--PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL 435

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTYN+LI G C   D  +AN L  +M  + + P+ VT+++++D  C+ G++D A  
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            L+ M+ +G+ PN  T+++++ G+C +G V+  ++    M 
Sbjct: 496 FLDEMVNKGIVPNIMTYNSIIKGYCRSGNVSKGQQFLPKMR 536



 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 171/317 (53%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A     A  + D M++ +   P L ++N +   L +   +D    +F+ +++ G+ 
Sbjct: 208 GDVEA-----AMALIDSMVS-KGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVA 261

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ ++N+LI  FC+ G +         +     TPD V+F+ LI        +  AA  
Sbjct: 262 PDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSFSCLIGLFTRRGEMDHAAEY 321

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +++ FG  P+ + Y+ +I G CR G  + AL + +EM      FG  C P+ VTY T+
Sbjct: 322 LREMREFGLMPDGVIYTMVIGGFCRAGLMLEALRVRDEMV----AFG--CLPDVVTYNTL 375

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++GLCKE  +  A+EL  +MK++ + PD+ T+ +LIHG+C   +  +A      + DQ +
Sbjct: 376 LNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRL 435

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PD+VT+N ++D +C+ G + +A+ L + M  R + PN  T+S L+D  C  G+V++A  
Sbjct: 436 RPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFA 495

Query: 380 LFVSMESMGCKHTVFSY 396
               M + G    + +Y
Sbjct: 496 FLDEMVNKGIVPNIMTY 512



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 167/343 (48%), Gaps = 42/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   +  M   R +P  + SF+ L G   +    D      + +   GL PD   Y ++
Sbjct: 282 EALRFYKEMRGRRVTPD-VVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDGVIYTMV 340

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FC+ G +     V   ++     PD V + +L+ GLC E R+ +A  L  ++K  G 
Sbjct: 341 IGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGV 400

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ T++TLI+G CR G+   AL  F+ +++         +P+ VTY T+IDG+C++G 
Sbjct: 401 PPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQR------LRPDIVTYNTLIDGMCRQGD 454

Query: 269 VDKAKEL----------------------------------FL-QMKDKNINPDVVTYNS 293
           + KA EL                                  FL +M +K I P+++TYNS
Sbjct: 455 LGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNS 514

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +I G+C + + ++    L +M    V PD++T+N ++    K GKM EA  LL++M    
Sbjct: 515 IIKGYCRSGNVSKGQQFLPKMRHDKVMPDLITYNTLIHGYVKEGKMHEAFNLLKIMENEN 574

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           V P+  T++ ++ GF + G +  A  ++  M + G +   ++Y
Sbjct: 575 VQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTY 617



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 143/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K +       L   +   G+ PDL T+  LI+ +C+ G +      
Sbjct: 367 PDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTLIHGYCRDGNIEKALQF 426

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I      PD V + +LI G+C +  + +A  L+  + +    PN +TYS LI+  C 
Sbjct: 427 FDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCE 486

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +EM N     G+V  PN +TY +II G C+ G V K ++   +M+   +
Sbjct: 487 KGQVDNAFAFLDEMVNK----GIV--PNIMTYNSIIKGYCRSGNVSKGQQFLPKMRHDKV 540

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TYN+LIHG+      +EA  LL  M ++ VQPD VT+N+I+     +G M EA  
Sbjct: 541 MPDLITYNTLIHGYVKEGKMHEAFNLLKIMENENVQPDAVTYNMIISGFSVHGNMQEADW 600

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + + M  RG+ P+  T+ ++++G  + G    + +L   M   G
Sbjct: 601 VYKKMGARGIEPDRYTYMSMINGHVVAGNSKKSFQLHDEMLQKG 644



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/288 (29%), Positives = 147/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++     KT  +  V ++   +    +FPD+ T+N++++   + G V     ++  +
Sbjct: 161 TLNIMVHSYCKTLQFGEVDTVISEMEKRCVFPDVVTHNVMVDARFRAGDVEAAMALIDSM 220

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P  V + S++KGL    R  +A  +F  + A G  P+V +++ LI G CR G  
Sbjct: 221 VSKGIKPGLVTYNSVLKGLLRNGRWDKAREVFRAMDACGVAPDVRSFNMLIGGFCRAGEL 280

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL  ++EM       G    P+ V+++ +I    + G +D A E   +M++  + PD 
Sbjct: 281 EEALRFYKEMR------GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREMREFGLMPDG 334

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  +I GFC A    EA  +  EM+  G  PDVVT+N +++ LCK  ++ +A  LL  
Sbjct: 335 VIYTMVIGGFCRAGLMLEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNE 394

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL+ G+C  G +  A + F ++     +  + +Y
Sbjct: 395 MKERGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTY 442



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 128/257 (49%), Gaps = 6/257 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP L +F  L     +  + +  L  F  ++   L PD+ TYN LI+  C+ G +  
Sbjct: 398 RGVPPDLCTFTTLIHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGK 457

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +      P+ V ++ LI   C + ++  A A   ++   G  PN++TY+++I 
Sbjct: 458 ANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAFLDEMVNKGIVPNIMTYNSIIK 517

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR+G+         +M +          P+ +TY T+I G  KEG + +A  L   M+
Sbjct: 518 GYCRSGNVSKGQQFLPKMRHDK------VMPDLITYNTLIHGYVKEGKMHEAFNLLKIME 571

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           ++N+ PD VTYN +I GF    +  EA+ +  +M  +G++PD  T+  +++     G   
Sbjct: 572 NENVQPDAVTYNMIISGFSVHGNMQEADWVYKKMGARGIEPDRYTYMSMINGHVVAGNSK 631

Query: 341 EASRLLELMILRGVNPN 357
           ++ +L + M+ +G+ P+
Sbjct: 632 KSFQLHDEMLQKGLAPD 648



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 101/233 (43%), Gaps = 6/233 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++  +L S  TP    F  LI+      +  EA   F  L            + L+  L 
Sbjct: 76  IVSSLLASSPTPQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPIPAAASNALLAALS 135

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G   +  + +  + + N +       NT T   ++   CK     +   +  +M+ + 
Sbjct: 136 RAGWPHLTADAYRLVLSSNSEV------NTYTLNIMVHSYCKTLQFGEVDTVISEMEKRC 189

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVT+N ++     A D   A  L+  M+ +G++P +VT+N ++  L +NG+ D+A 
Sbjct: 190 VFPDVVTHNVMVDARFRAGDVEAAMALIDSMVSKGIKPGLVTYNSVLKGLLRNGRWDKAR 249

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +   M   GV P+  +F+ L+ GFC  G +  A   +  M        V S+
Sbjct: 250 EVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMRGRRVTPDVVSF 302


>gi|449446121|ref|XP_004140820.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 159/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   SFN L   L K+++ D    L K +    ++PD++TY++LI+  CK GR+     +
Sbjct: 256 PTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQL 315

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ + FT+LI G C   RI  A   + ++   G KP+++ Y+TL+NGLC+
Sbjct: 316 FDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCK 375

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM        V  KP+ +TYTT+IDG CKEG ++ A E+   M ++ +
Sbjct: 376 VGDVNKARKLVDEMRM------VGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV 429

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V + +LI GFC      +A   L EM++ G++PD  T+ +++D  CK G +    +
Sbjct: 430 VLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFK 489

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M + G  P   T++ LM+G C  G++ +A  L  +M ++G      +Y
Sbjct: 490 LLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +  +N+L     K         +F  +   GL P   ++N LIN  CK   +  GF 
Sbjct: 220 PPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFR 279

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  +   PD   ++ LI GLC E R+  A  LF +++  G +PN IT++ LI+G C
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQC 339

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R+     A+N + +M       GV  KP+ V Y T+++GLCK G V+KA++L  +M+   
Sbjct: 340 RSRRIDSAMNTYHQMLT----MGV--KPDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVG 393

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G+C   D   A  +   M ++GV  D V F  ++   C++G++ +A 
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+ +T++ ++DG+C  G V    +L   M+  G K  V +Y
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 139/272 (51%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           T+ + +  +   G  P +  YNILIN FCK G +    ++   I +    P  V+F +LI
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            GLC    + E   L   ++     P+V TYS LI+GLC+ G   VA  LF+EM      
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG-- 323

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                +PN +T+T +IDG C+   +D A   + QM    + PD+V YN+L++G C   D 
Sbjct: 324 ----LRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDV 379

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           N+A  L+ EM   G++PD +T+  ++D  CK G ++ A  + + M   GV  +   F+ L
Sbjct: 380 NKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAL 439

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + GFC  GRV  A+     M   G K    +Y
Sbjct: 440 ISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 140/276 (50%), Gaps = 10/276 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M   R   P   +F  L     +++  D+ ++ + ++ + G+ PDL  YN L+N  
Sbjct: 315 LFDEM-QQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+G V+    ++  +      PD + +T+LI G C E  +  A  +   +   G   + 
Sbjct: 374 CKVGDVNKARKLVDEMRMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDN 433

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + ++ LI+G CR G    A     EM           KP+  TYT +IDG CK+G V   
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAG------MKPDDATYTMVIDGYCKKGNVKMG 487

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L  +M+     P V+TYN L++G C       AN LL  M++ GV PD +T+N++++ 
Sbjct: 488 FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG 547

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            CKNGK   A  LL+L   +G+  + + +++L+  +
Sbjct: 548 HCKNGK---AEDLLKLRNEKGLIVDYAYYTSLVSEY 580



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 136/281 (48%), Gaps = 7/281 (2%)

Query: 117 LAKTKHYDTVLSLFKR-LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           L   K  D+  S+F   L++ G     + ++ L+  +   G VS        +  S F  
Sbjct: 127 LVSRKGKDSAASVFAAILDTAGTRCSNFVFDALMIAYWDSGFVSDAIQCFRLVRNSNFQI 186

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
                  L+  +   +  +     ++++  +G  P V  Y+ LIN  C+ G    A  +F
Sbjct: 187 PFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIF 246

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            E+     K G+  +P TV++ T+I+GLCK   +D+   L   M++  I PDV TY+ LI
Sbjct: 247 NEIR----KRGL--RPTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLI 300

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           HG C     + A  L  EM  +G++P+ +TF  ++D  C++ ++D A      M+  GV 
Sbjct: 301 HGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQCRSRRIDSAMNTYHQMLTMGVK 360

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P+   ++TL++G C  G VN A++L   M  +G K    +Y
Sbjct: 361 PDLVMYNTLLNGLCKVGDVNKARKLVDEMRMVGMKPDKITY 401


>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
          Length = 645

 Score =  186 bits (472), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 104/312 (33%), Positives = 165/312 (52%), Gaps = 14/312 (4%)

Query: 89  EAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  + D M     +P PP+    L   C  +   +   + + + L+  G   D+   N+
Sbjct: 129 DALAVLDDMARRGCAPTPPMYHVTLEAAC--RASGFRGAVGVLRDLHGRGCALDVGNCNL 186

Query: 148 LINCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           ++   C  G V     +L  +L S  C  PD V++ ++++GLC   R      L  ++ A
Sbjct: 187 VLQAVCDQGPVDEAVRLLRDLLPSFGC-EPDVVSYNAVLRGLCMARRWGHVQDLMEEMVA 245

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV-VCKPNTVTYTTIIDGLC 264
            GC PN++T+STLI  LCR G       LFE +   + +     C P+   Y TIIDG+C
Sbjct: 246 AGCPPNIVTFSTLIGHLCRNG-------LFERVHEVHAQMAEHGCAPDVRMYATIIDGVC 298

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KE  ++ A+ +  +M    ++P+VV YN+L+ G C A+ W EA  LL EM D+    D V
Sbjct: 299 KEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDV 358

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TFN+++D LC+NG +D    +LE M+  G  P+  T++T+++GFC  G ++ A  L  SM
Sbjct: 359 TFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSM 418

Query: 385 ESMGCKHTVFSY 396
            + GC+    SY
Sbjct: 419 AACGCRPNTVSY 430



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +F+ L G L +   ++ V  +  ++   G  PD+  Y  +I+  CK  R+     
Sbjct: 249 PPNIVTFSTLIGHLCRNGLFERVHEVHAQMAEHGCAPDVRMYATIIDGVCKEERLEVARG 308

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L R+     +P+ V + +L+KGLC+  R  EA  L  ++    C  + +T++ L++ LC
Sbjct: 309 ILNRMPSYGLSPNVVCYNTLLKGLCSADRWEEAEGLLAEMFDKDCPLDDVTFNILVDFLC 368

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G     + + E+M          C P+ +TYTT+I+G CKEG +D+A  L   M    
Sbjct: 369 QNGLVDRVIEVLEQMLEHG------CMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACG 422

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ V+Y  ++ G C A  W +A  L+ +M+ QG  P+ VTFN +++ LCK G +++A 
Sbjct: 423 CRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAI 482

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+ M++ G +P+  ++ST++DG    G  + A EL   M   G       Y
Sbjct: 483 ELLKQMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIY 535



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 91/282 (32%), Positives = 150/282 (53%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L   L +    D V+ + +++   G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 358 VTFNILVDFLCQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRS 417

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ V++T ++KGLC+  R ++A  L +++   GC PN +T++TLIN LC+ G 
Sbjct: 418 MAACGCRPNTVSYTIVLKGLCSAERWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 477

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  D+A EL   M  K ++P
Sbjct: 478 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSP 530

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  V+ D V +N ++  LCK G+ D A   L
Sbjct: 531 NTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFL 590

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G V  A+E+   + S G
Sbjct: 591 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 56/218 (25%), Positives = 97/218 (44%), Gaps = 13/218 (5%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            ++LI+ LCA  R  EAA   +          V+ Y+ ++ G CR G    A  L     
Sbjct: 50  LSALIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLAAARRLAAS-- 104

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                  V   PN  TY  ++  LC  G +  A  +   M  +   P    Y+  +   C
Sbjct: 105 -------VPVAPNAYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPPMYHVTLEAAC 157

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL-ELMILRGVNPNT 358
            A+ +  A  +L ++  +G   DV   N+++  +C  G +DEA RLL +L+   G  P+ 
Sbjct: 158 RASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEPDV 217

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++ ++ G C+  R  H ++L   M + GC   + ++
Sbjct: 218 VSYNAVLRGLCMARRWGHVQDLMEEMVAAGCPPNIVTF 255



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 56/134 (41%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K  + D  L L   +   G+ P+   Y+ + +     GR++    +
Sbjct: 495 PDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEGRINKVIQM 554

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A      + + GC PN  TY+ LI GL  
Sbjct: 555 FENIQDTTVRSDAVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLAS 614

Query: 225 TGHTIVALNLFEEM 238
            G    A  +  E+
Sbjct: 615 EGFVKEAQEILTEL 628



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+    SP  +  ++ +   L+     + V+ +F+ +  T +  D   YN 
Sbjct: 514 DEALELLNVMVKKGMSPNTII-YSSIASALSGEGRINKVIQMFENIQDTTVRSDAVLYNA 572

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G        L  ++ S   P+   +T LI+GL +E  + EA  + T+L + G
Sbjct: 573 VISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEILTELCSKG 632


>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
          Length = 742

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 165/321 (51%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N     L +  H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     PD   F +LI  LC  +R+ EA  L  ++   G  P+V T++ LIN LC+
Sbjct: 344 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403

Query: 225 TGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTVT 255
            G   +AL LFEEM N                    GK G             C  +T+T
Sbjct: 404 VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 463

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y TIIDGLCK+  +++A+E+F QM  + I+ + +T+N+LI G C     ++A  L+ +M+
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+QP+ +T+N I+   CK G + +A+ +LE M   G   +  T+ TL++G C  GR  
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A ++   M   G + T  +Y
Sbjct: 584 VALKVLRGMRIKGMRPTPKAY 604



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G 
Sbjct: 172 MGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGS 231

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     V  R+L    +   V    LI G C   R+ +A     +  A G +P+ ITY+T
Sbjct: 232 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 291

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            +NGLC+  H   AL + + M            P+  TY  +++ LCK G +++AK +  
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM D+   PD+ T+N+LI   C  N   EA  L  ++  +GV PDV TFN++++ LCK G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               A RL E M   G  P+  T++TL+D  C  G++  A +L   MES GC  +  +Y
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M++ R   P +T+FN L   L      +  L L +++   G+ PD+YT+NIL
Sbjct: 339 EAKGILNQMVD-RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G       +   +  S  TPD V + +LI  LC+  ++ +A  L   +++ GC
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             + ITY+T+I+GLC+      A  +F++M   G  +       N +T+ T+IDGLCK+ 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR-------NAITFNTLIDGLCKDK 510

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A EL  QM  + + P+ +TYNS++  +C   D  +A  +L  M   G + DVVT+ 
Sbjct: 511 KIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 570

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK G+   A ++L  M ++G+ P    ++ ++        +  A  LF  M  +
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 631 GEPPDALTY 639



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 29/250 (11%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D V +  L+  L   S++    ++++++ A G KP+V+T++TL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIML 204

Query: 236 EEMA---------------NGNGKFGVV--------------CKPNTVTYTTIIDGLCKE 266
           EEM+                G  + G +              C    VT   +I+G CK 
Sbjct: 205 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 264

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+ A     Q       PD +TYN+ ++G C  +    A  ++  M+ +G  PDV T+
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N++++ LCKNG+++EA  +L  M+ RG  P+ +TF+TL+   C   R+  A +L   +  
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 384

Query: 387 MGCKHTVFSY 396
            G    V+++
Sbjct: 385 KGVSPDVYTF 394



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 8/262 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ +++     P+ + + S++   C +  I +AA +   + A G + +V+TY TLINGLC
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL +   M           +P    Y  ++  L +   +  A  LF +M +  
Sbjct: 578 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD +TY  +  G C       EA   ++EM+D+G  P+  +F ++ + L   G  D  
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 691

Query: 343 SRLLELMILRGVNPNTSTFSTL 364
            R +E+ I+  V+   S  S +
Sbjct: 692 IRAIEI-IMEKVDLRESDVSAI 712



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           PD  A   ++    A         ++ ++ +  G    +     L+  + R GH +    
Sbjct: 52  PDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQV---- 107

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTY 291
                     K GVV         + +D    +   D A +L L        I  D V Y
Sbjct: 108 ----------KLGVV--------HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVY 149

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N L++     +       +  EM  +G++PDVVTFN +M  LC+  ++  A  +LE M  
Sbjct: 150 NHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVIMLEEMSS 209

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           RGV P+ +TF+TLM GF   G +  A  +   M  MGC  T
Sbjct: 210 RGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           FG+  + +TV Y  +++ L +   +   + ++ +M  + I PDVVT+N+L+   C A+  
Sbjct: 140 FGI--QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 197

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  +L EM  +GV PD  TF  +M    + G ++ A R+   M+  G +    T + L
Sbjct: 198 RTAVIMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 257

Query: 365 MDGFCLTGRVNHA 377
           ++G+C  GRV  A
Sbjct: 258 INGYCKLGRVEDA 270


>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 833

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/309 (35%), Positives = 162/309 (52%), Gaps = 13/309 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P+ A  +F+ +      P    P + ++N+L  C  +T+      +LF R   TGL  D+
Sbjct: 95  PSLAVALFNRICREEARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDV 154

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              +IL+ C     R      ++L R+      PD +++ +++K LC +SR   A  L  
Sbjct: 155 IVASILLKCLYHAKRSDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLH 214

Query: 202 KL--KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +  K+ GC PNV+TY+T+I+GL R G    A NLF EM     + GVV  P+ VTYT+I
Sbjct: 215 TMVKKSGGCSPNVVTYNTVIHGLFREGEVSKACNLFHEMM----QQGVV--PDVVTYTSI 268

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ID LCK   +DKA+ +  QM      P+ VTYN +IHG+  +  W E   +  EM  QG+
Sbjct: 269 IDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGL 328

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P++VT N  M  LCK+GK  EA+   + M  +G  PN  T+S L+ G+   G       
Sbjct: 329 MPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLN 388

Query: 380 LFVSMESMG 388
           LF SME  G
Sbjct: 389 LFNSMEGNG 397



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 101/325 (31%), Positives = 161/325 (49%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRL---- 133
           ++  +A  +FD +L  +  P P  S N  F  LA+              ++LF R+    
Sbjct: 51  LSTEDAHHLFDELLR-QTIPVPERSLNGFFTALARAPSSAACRDGPSLAVALFNRICREE 109

Query: 134 -NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                  P + TYNIL++C C+  R + GF + GR L++    D +  + L+K L    R
Sbjct: 110 ARPRVALPTVCTYNILMDCCCRTRRPTVGFALFGRFLKTGLKMDVIVASILLKCLYHAKR 169

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             +    L  ++   G +P+ I+Y+T++  LC    +  AL+L   M   +G     C P
Sbjct: 170 SDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGG----CSP 225

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N VTY T+I GL +EG V KA  LF +M  + + PDVVTY S+I   C A   ++A  +L
Sbjct: 226 NVVTYNTVIHGLFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVL 285

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+  G QP+ VT+N ++     +G+  E + +   M  +G+ PN  T ++ M   C  
Sbjct: 286 RQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKH 345

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G+   A E F SM + G K  + +Y
Sbjct: 346 GKSKEAAEFFDSMAAKGHKPNLVTY 370



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 149/285 (52%), Gaps = 7/285 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN++     K    D  + +F ++   G+ PD  TY I+I  F +MGR++       +++
Sbjct: 405 FNIVIDAYGKRGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMI 464

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                P+ + + SLI+G C    +++A  L +++ + G  +PN++ ++++IN LC+ G  
Sbjct: 465 AMGLKPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRV 524

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F+ + +      +  +P+ +T+ ++IDG    G ++KA  +   M    I PDV
Sbjct: 525 VEAHDIFDFVIH------IGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDV 578

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V+YN+LI G+C     ++   L  EM+ +GV+P  +T+ +I+  L  +G+   A ++   
Sbjct: 579 VSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHE 638

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           MI  G   + ST   ++ G C     + A  +F  + +M  K  +
Sbjct: 639 MIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFNI 683



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 153/328 (46%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR------- 157
           P   ++N +    + +  +     +F+ + S GL P++ T N  ++  CK G+       
Sbjct: 295 PNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEF 354

Query: 158 -------------VSHGFVVLGRILRSCFTPDAVAFTSLI-KGLCAESRIM--------- 194
                        V++  ++ G     CF      F S+   G+ A+ R+          
Sbjct: 355 FDSMAAKGHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGK 414

Query: 195 -----EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                E   +FT+++  G  P+  TY  +I    R G    A++ F +M        +  
Sbjct: 415 RGMMDETMLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQM------IAMGL 468

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPDVVTYNSLIHGFCYANDWNEAN 308
           KP  + Y ++I G C  G + KAKEL  +M  + I  P++V +NS+I+  C      EA+
Sbjct: 469 KPEGIVYHSLIQGFCMHGNLVKAKELVSEMMSRGIPRPNIVFFNSIINSLCKEGRVVEAH 528

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +   ++  G +PDV+TFN ++D     GK+++A  +L+ MI  G+ P+  +++TL+DG+
Sbjct: 529 DIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTLIDGY 588

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  GR++    LF  M S G K T  +Y
Sbjct: 589 CRNGRIDDGLILFGEMLSKGVKPTTITY 616



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 135/294 (45%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P   S+N +   L +       L L   +   S G  P++ TYN +I+   + G VS   
Sbjct: 188 PDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGCSPNVVTYNTVIHGLFREGEVSKAC 247

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +   +++    PD V +TS+I  LC    + +A  +  ++ + G +PN +TY+ +I+G 
Sbjct: 248 NLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPNKVTYNCMIHGY 307

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
             +G       +F EM +          PN VT  + +  LCK G   +A E F  M  K
Sbjct: 308 SISGQWKETAGMFREMTSQG------LMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAK 361

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P++VTY+ L+HG+     + +   L   M   G+  D   FN+++D   K G MDE 
Sbjct: 362 GHKPNLVTYSVLLHGYATEGCFVDMLNLFNSMEGNGIVADQRVFNIVIDAYGKRGMMDET 421

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   M  +GV P+  T+  ++  F   GR+  A + F  M +MG K     Y
Sbjct: 422 MLIFTQMQEQGVIPDACTYGIVIAAFSRMGRLADAMDKFNQMIAMGLKPEGIVY 475



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 143/307 (46%), Gaps = 18/307 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNL-----LFGCLAKTKHYDTVLSLFKRLNSTGL-FPDL 142
           +A   F+ M+ M   P  +   +L     + G L K K       L   + S G+  P++
Sbjct: 455 DAMDKFNQMIAMGLKPEGIVYHSLIQGFCMHGNLVKAKE------LVSEMMSRGIPRPNI 508

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
             +N +IN  CK GRV     +   ++     PD + F SLI G     +I +A  +   
Sbjct: 509 VFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGVLDA 568

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           + + G +P+V++Y+TLI+G CR G     L LF EM +         KP T+TY  I+ G
Sbjct: 569 MISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKG------VKPTTITYGIILHG 622

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L  +G    AK++  +M +     D+ T   ++ G C  N  +EA  +  ++    V+ +
Sbjct: 623 LFNDGRTVGAKKMCHEMIESGTTMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKFN 682

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           +   N ++D + K  K +EA  L + +   G+ PN ST+  ++      G V  A  +F 
Sbjct: 683 IAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFS 742

Query: 383 SMESMGC 389
            ME  GC
Sbjct: 743 LMEKSGC 749



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/273 (25%), Positives = 123/273 (45%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  FN +   L K         +F  +   G  PD+ T+N LI+ +  +G++   F V
Sbjct: 506 PNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKAFGV 565

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ +   PD V++ +LI G C   RI +   LF ++ + G KP  ITY  +++GL  
Sbjct: 566 LDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFN 625

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T+ A  +  EM        +       T   I+ GLC+    D+A  +F ++   N+
Sbjct: 626 DGRTVGAKKMCHEMIESGTTMDI------STCGIILGGLCRNNCDDEAIAMFKKLGAMNV 679

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++   N++I          EA  L   +   G+ P+  T+ V++  L K G ++EA  
Sbjct: 680 KFNIAIINTMIDAMYKVRKREEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADN 739

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +  LM   G  P++   + ++      G +  A
Sbjct: 740 MFSLMEKSGCAPSSRLLNYIIRVLLEKGEIVKA 772



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 129/285 (45%), Gaps = 7/285 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD+++++   P  +T FN L          +    +   + S G+ PD+ +YN L
Sbjct: 526 EAHDIFDFVIHIGERPDVIT-FNSLIDGYGLVGKIEKAFGVLDAMISAGIEPDVVSYNTL 584

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C+ GR+  G ++ G +L     P  + +  ++ GL  + R + A  +  ++   G 
Sbjct: 585 IDGYCRNGRIDDGLILFGEMLSKGVKPTTITYGIILHGLFNDGRTVGAKKMCHEMIESGT 644

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ T   ++ GLCR      A+ +F+++   N KF      N     T+ID + K   
Sbjct: 645 TMDISTCGIILGGLCRNNCDDEAIAMFKKLGAMNVKF------NIAIINTMIDAMYKVRK 698

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++AKELF  +    + P+  TY  +I          EA+ +   M   G  P     N 
Sbjct: 699 REEAKELFDSISATGLVPNASTYGVMIKNLLKEGSVEEADNMFSLMEKSGCAPSSRLLNY 758

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           I+  L + G++ +A   +  +  + ++   ST S LM  F   G+
Sbjct: 759 IIRVLLEKGEIVKAGNYMFKVDGKRISLEASTVSLLMALFSREGK 803


>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
 gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
           Group]
 gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
          Length = 742

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 165/321 (51%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N     L +  H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 284 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 343

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     PD   F +LI  LC  +R+ EA  L  ++   G  P+V T++ LIN LC+
Sbjct: 344 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 403

Query: 225 TGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTVT 255
            G   +AL LFEEM N                    GK G             C  +T+T
Sbjct: 404 VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 463

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y TIIDGLCK+  +++A+E+F QM  + I+ + +T+N+LI G C     ++A  L+ +M+
Sbjct: 464 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 523

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+QP+ +T+N I+   CK G + +A+ +LE M   G   +  T+ TL++G C  GR  
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A ++   M   G + T  +Y
Sbjct: 584 VALKVLRGMRIKGMRPTPKAY 604



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G 
Sbjct: 172 MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 231

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     V  R+L    +   V    LI G C   R+ +A     +  A G +P+ ITY+T
Sbjct: 232 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 291

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            +NGLC+  H   AL + + M            P+  TY  +++ LCK G +++AK +  
Sbjct: 292 FVNGLCQNDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILN 345

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM D+   PD+ T+N+LI   C  N   EA  L  ++  +GV PDV TFN++++ LCK G
Sbjct: 346 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 405

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               A RL E M   G  P+  T++TL+D  C  G++  A +L   MES GC  +  +Y
Sbjct: 406 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M++ R   P +T+FN L   L      +  L L +++   G+ PD+YT+NIL
Sbjct: 339 EAKGILNQMVD-RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 397

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G       +   +  S  TPD V + +LI  LC+  ++ +A  L   +++ GC
Sbjct: 398 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 457

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             + ITY+T+I+GLC+      A  +F++M   G  +       N +T+ T+IDGLCK+ 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR-------NAITFNTLIDGLCKDK 510

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A EL  QM  + + P+ +TYNS++  +C   D  +A  +L  M   G + DVVT+ 
Sbjct: 511 KIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 570

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK G+   A ++L  M ++G+ P    ++ ++        +  A  LF  M  +
Sbjct: 571 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 630

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 631 GEPPDALTY 639



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 29/250 (11%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D V +  L+  L   S++    ++++++ A G KP+V+T++TL+  LCR      A+ + 
Sbjct: 145 DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 204

Query: 236 EEMA---------------NGNGKFGVV--------------CKPNTVTYTTIIDGLCKE 266
           EEM+                G  + G +              C    VT   +I+G CK 
Sbjct: 205 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 264

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+ A     Q       PD +TYN+ ++G C  +    A  ++  M+ +G  PDV T+
Sbjct: 265 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 324

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N++++ LCKNG+++EA  +L  M+ RG  P+ +TF+TL+   C   R+  A +L   +  
Sbjct: 325 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 384

Query: 387 MGCKHTVFSY 396
            G    V+++
Sbjct: 385 KGVSPDVYTF 394



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 8/262 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 458 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 517

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ +++     P+ + + S++   C +  I +AA +   + A G + +V+TY TLINGLC
Sbjct: 518 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 577

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL +   M           +P    Y  ++  L +   +  A  LF +M +  
Sbjct: 578 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 631

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD +TY  +  G C       EA   ++EM+D+G  P+  +F ++ + L   G  D  
Sbjct: 632 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 691

Query: 343 SRLLELMILRGVNPNTSTFSTL 364
            R +E+ I+  V+   S  S +
Sbjct: 692 IRAIEI-IMEKVDLRESDVSAI 712



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 59/221 (26%), Positives = 91/221 (41%), Gaps = 25/221 (11%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           PD  A   ++    A         ++ ++ +  G    +     L+  + R GH +    
Sbjct: 52  PDPDAALRMLNAALARDDFAPGPEVYEEIIRKLGAVGALDLMKVLVAEMRREGHQV---- 107

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTY 291
                     K GVV         + +D    +   D A +L L        I  D V Y
Sbjct: 108 ----------KLGVV--------HSFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVY 149

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N L++     +       +  EM  +G++PDVVTFN +M  LC+  ++  A  +LE M  
Sbjct: 150 NHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSS 209

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           RGV P+ +TF+TLM GF   G +  A  +   M  MGC  T
Sbjct: 210 RGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSAT 250



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           FG+  + +TV Y  +++ L +   +   + ++ +M  + I PDVVT+N+L+   C A+  
Sbjct: 140 FGI--QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 197

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  +L EM  +GV PD  TF  +M    + G ++ A R+   M+  G +    T + L
Sbjct: 198 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 257

Query: 365 MDGFCLTGRVNHA 377
           ++G+C  GRV  A
Sbjct: 258 INGYCKLGRVEDA 270


>gi|115474407|ref|NP_001060800.1| Os08g0107700 [Oryza sativa Japonica Group]
 gi|113622769|dbj|BAF22714.1| Os08g0107700, partial [Oryza sativa Japonica Group]
          Length = 374

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 182/345 (52%), Gaps = 10/345 (2%)

Query: 58  LTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
           L+  D   + +F   + +   +        + A   FD +L+ RP+   +   N      
Sbjct: 6   LSAPDGTKVSRFNLMKLQGRQEAAAAGTDSHHAHHAFDELLH-RPTTSSIVDLNRALSDA 64

Query: 118 AKTKHYDTV-LSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
           A+  H   V +SLF+R+       + P+L TY+++I+C  ++G +   F  LGR++RS +
Sbjct: 65  AR--HSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGW 122

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           T +A+ F+ L+K LC + R  EA  +   ++   GC PNV +Y+ L+ GLC    +  AL
Sbjct: 123 TAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQAL 182

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLQMKDKNINPDVVTY 291
           +L   M   +   G    P+ V+Y T+I+GL +EG  +D A  LF QM D+ ++PDVVTY
Sbjct: 183 HLLHTMMVADDTRGGY-PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTY 241

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           NS+I     A   ++A  +L+ M+  G  P+ +T N ++   C +GK ++A  + + M  
Sbjct: 242 NSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCR 301

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            GV P+  T++TLM   C  GR   A+++F SM   G K    +Y
Sbjct: 302 DGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATY 346


>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
 gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
          Length = 457

 Score =  186 bits (471), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L   L + + ++   S+F+ + + G  P++++Y+ILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+ V + SL+ GLC   ++ EA  LF+++   GC P+ + Y+ LI+G  +
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LFEEM          C P   TY +++ G  ++G   + + LF  M  +  
Sbjct: 170 KGDMGEAYRLFEEMLEKG------CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC 223

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ T+N+L+ GFC   D  EA+ L +EM   G  PDVV++N +M  +C  GK  EA R
Sbjct: 224 VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEAQR 283

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  MI  GV P+  +++ L+DG+  +G ++HA +LF  +   G +   FSY
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M++    P  +T  +LL G L K       + LF R+   G  PD   YN+
Sbjct: 104 DEAAELLNEMIDGGHQPNVVTYGSLLSG-LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G +   + +   +L     P    + SL+ G   +       +LF  +   G
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ L++G C+ G  + A  LF EM +      + C P+ V+Y T++ G+C +G
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS------LGCPPDVVSYNTLMRGMCSKG 276

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A+ L  +M    + PD+V+YN LI G+  +   + A  L  E+   G++PD  +++
Sbjct: 277 KPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYS 336

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+D LC+ GK+  A  + + MI  G  P+ +    L+ G C   R+  + ELF +M   
Sbjct: 337 TIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 388 GCKHTVFSY 396
            C   +  Y
Sbjct: 397 ECVPLIPEY 405



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 141/301 (46%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F  M+  R  PP    +N+L    +K         LF+ +   G  P ++TYN 
Sbjct: 139 KEAVDLFSRMV-YRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ F + G       +   +LR    P+   F +L+ G C    ++EA  LF ++++ G
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V++Y+TL+ G+C  G    A  L  EM     + GV   P+ V+Y  +IDG  K G
Sbjct: 258 CPPDVVSYNTLMRGMCSKGKPHEAQRLLREMI----RSGV--GPDIVSYNILIDGYSKSG 311

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A +LF ++    + PD  +Y+++I   C A     A  +  +M+  G  PD     
Sbjct: 312 ALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVI 371

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+  ++ E+  L + M+     P    ++ LM   C   R +   E+F  +   
Sbjct: 372 PLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431

Query: 388 G 388
           G
Sbjct: 432 G 432



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/219 (33%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           +++  L++ L    R       +  +   GC PN  TY  L+  LC+      A ++F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           MA         C PN  +Y+ +I GLC+   VD+A EL  +M D    P+VVTY SL+ G
Sbjct: 78  MAAQG------CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSG 131

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C      EA  L   M+ +G  PD V +NV++D   K G M EA RL E M+ +G  P 
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPT 191

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T+++L+ GF   G     + LF  M   GC   +F++
Sbjct: 192 VFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           S +GD+      EA+ +F+ ML  +   P + ++N L    ++   +  V SLFK +   
Sbjct: 168 SKKGDM-----GEAYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  P+++T+N L++ FCKMG +     +   +      PD V++ +L++G+C++ +  EA
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHEA 281

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  ++   G  P++++Y+ LI+G  ++G    A+ LF E+     K G+  +P+  +Y
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIP----KSGL--EPDAFSY 335

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           +TIID LC+ G V  A  +F  M      PD      L+ G C      E+  L   M+ 
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
               P +  +N++M +LCK  + D+   +   +  RG +P+      +++
Sbjct: 396 FECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
            T++Y  +++ L K G  D     +  M      P+  TY  L+   C A  + EA  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M  QG  P+V ++++++  LC+  K+DEA+ LL  MI  G  PN  T+ +L+ G C  
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKM 135

Query: 372 GRVNHAKELFVSMESMGC 389
           G++  A +LF  M   GC
Sbjct: 136 GKLKEAVDLFSRMVYRGC 153


>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
 gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
          Length = 742

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 161/285 (56%), Gaps = 2/285 (0%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN+L G L  +   D    LF ++   G  P+ Y++ IL+  +C+ G  S G  +
Sbjct: 54  PETYTFNVLIGLLCDSGCLDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGLEL 113

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG + R  F+P+ V + +LI   C E +  +A  L  +++  G  P+V+T++  I+ LC 
Sbjct: 114 LGEMRRLGFSPNKVVYNTLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCS 173

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G  + A  +F +M   +   G+  +PN +TY  ++ G CKEG +++A+ LF +MK    
Sbjct: 174 SGKVLEASRIFRDMQI-DEVLGLP-QPNIITYNLMLGGFCKEGMLEEARALFEKMKVSEN 231

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  +YN  + G        EA  +L EM+D G++P+V ++N++MD LCKNG + +A  
Sbjct: 232 LMNRESYNIWLLGLVRIGKLLEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARM 291

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L+ LM   GV P+T T++TL+ G+C TG+V+ A  +   M   GC
Sbjct: 292 LMRLMTSSGVLPDTVTYTTLLHGYCHTGKVSEANNVLREMMRDGC 336



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 103/360 (28%), Positives = 168/360 (46%), Gaps = 54/360 (15%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M++M    P + S+N++   L K         L + + S+G+ PD  TY  L
Sbjct: 253 EAQLVLKEMVDM-GMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTL 311

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C  G+VS    VL  ++R   +P+      L+  L  E RI EA  L  K+   G 
Sbjct: 312 LHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGY 371

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------GNGKFGVV--------CKP 251
             + +T + +I+GLC  G    A+ +   M           GN   G+V        C P
Sbjct: 372 VIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMP 431

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN--------- 302
           + ++Y+TII GLCK G V +AK+ F++M  KN+ PD   Y+  IH FC            
Sbjct: 432 DLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVL 491

Query: 303 -DWNEANC-------------------------LLIEMMDQGVQPDVVTFNVIMDELCKN 336
            D  +  C                         L+ EM ++GV PDV  +N ++  LC+ 
Sbjct: 492 KDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEG 551

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF-VSMESMGCKHTVFS 395
           G++ +A  +L+ M+ +G++PN S+FS L+  FC     +   E+F +++   G K  ++S
Sbjct: 552 GRVKDAPSVLDEMLQKGISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCGHKEALYS 611



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 34/334 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD M   +   P   SF +L     +       L L   +   G  P+   YN 
Sbjct: 73  DDARELFDKMPE-KGCEPNEYSFGILVRGYCRAGFTSKGLELLGEMRRLGFSPNKVVYNT 131

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK--- 204
           LI+ FCK G+      ++  + +   +PD V F + I  LC+  +++EA+ +F  ++   
Sbjct: 132 LISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQIDE 191

Query: 205 AFGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKF 245
             G  +PN+ITY+ ++ G C+ G    A  LFE+M                      GK 
Sbjct: 192 VLGLPQPNIITYNLMLGGFCKEGMLEEARALFEKMKVSENLMNRESYNIWLLGLVRIGKL 251

Query: 246 -----------GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                       +  +PN  +Y  ++DGLCK G +  A+ L   M    + PD VTY +L
Sbjct: 252 LEAQLVLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTL 311

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           +HG+C+    +EAN +L EMM  G  P+  T N+++  L K G++ EA  LL+ M  +G 
Sbjct: 312 LHGYCHTGKVSEANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGY 371

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +T T + ++DG C  G+++ A E+   M + G
Sbjct: 372 VIDTVTCNIVIDGLCNNGKLDKAIEIVNGMWTHG 405



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 131/292 (44%), Gaps = 13/292 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K          F  +    L PD   Y++ I+ FCK G++S  F V
Sbjct: 431 PDLISYSTIISGLCKAGRVGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRV 490

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +         + SLI GL ++++I E   L  +++  G  P+V  Y+ +++ LC 
Sbjct: 491 LKDMEKKGCNKTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCE 550

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE---GFVDKAKELFLQMKD 281
            G    A ++ +EM            PN  +++ +I   CK      VD+  E+ L +  
Sbjct: 551 GGRVKDAPSVLDEMLQKG------ISPNISSFSILIKAFCKACDFSAVDEIFEIALNVCG 604

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
                  +T+N L+ G     +  +A  L    +D+        +  ++D LCK+ K+D+
Sbjct: 605 HKEALYSLTFNELLVG----GEVVKAKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDD 660

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           AS +L  +I +G   + ++F  ++DG    G  + A EL   M  M  +  V
Sbjct: 661 ASGILHKLIDKGYWFDPASFMPVIDGLGKRGNKHEADELAEKMMEMASEGKV 712


>gi|449454139|ref|XP_004144813.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
 gi|449524964|ref|XP_004169491.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Cucumis sativus]
          Length = 611

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P L +FN +   L K    +    +   +   G +P++ TYN LI+ +CKMGRV  
Sbjct: 224 RKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMGRVGK 283

Query: 161 GF---VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
            +    +L  ++ +  +P++V F  LI G C +  +  A  +F ++++ G KP V+TY++
Sbjct: 284 MYKADAILKEMVENKVSPNSVTFNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNS 343

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L+NGLC  G    A  L +EM + N       KPN +TY  +I+G CK+  +++A+ELF 
Sbjct: 344 LVNGLCNEGKLNEAKVLLDEMLSSN------LKPNVITYNALINGYCKKKLLEEARELFD 397

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            +  + + P+V+T+N+L+HG+C      EA  L   M+++G  P+  T+N ++   C+ G
Sbjct: 398 NIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLLQKVMLEKGFLPNASTYNCLIVGFCREG 457

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           KM+E   LL  M  RGV  +T T++ L+  +C       A  L   M   G K +  +Y
Sbjct: 458 KMEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTY 516



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 161/291 (55%), Gaps = 9/291 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S N L   L K   +  V  ++K +    + P+L T+N +IN  CK+G+++    V+  +
Sbjct: 197 SCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDM 256

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRI---MEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
               F P+ V + +LI G C   R+    +A A+  ++      PN +T++ LI+G C+ 
Sbjct: 257 KVWGFWPNVVTYNTLIDGYCKMGRVGKMYKADAILKEMVENKVSPNSVTFNVLIDGFCKD 316

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            +   AL +FEEM +         KP  VTY ++++GLC EG +++AK L  +M   N+ 
Sbjct: 317 ENLSAALKVFEEMQSQG------LKPTVVTYNSLVNGLCNEGKLNEAKVLLDEMLSSNLK 370

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+V+TYN+LI+G+C      EA  L   +  QG+ P+V+TFN ++   CK GKM+EA  L
Sbjct: 371 PNVITYNALINGYCKKKLLEEARELFDNIGKQGLTPNVITFNTLLHGYCKFGKMEEAFLL 430

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++M+ +G  PN ST++ L+ GFC  G++   K L   M+  G K    +Y
Sbjct: 431 QKVMLEKGFLPNASTYNCLIVGFCREGKMEEVKNLLNEMQCRGVKADTVTY 481



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 158/300 (52%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  I   M+  + SP  +T FN+L     K ++    L +F+ + S GL P + TYN L
Sbjct: 286 KADAILKEMVENKVSPNSVT-FNVLIDGFCKDENLSAALKVFEEMQSQGLKPTVVTYNSL 344

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  C  G+++   V+L  +L S   P+ + + +LI G C +  + EA  LF  +   G 
Sbjct: 345 VNGLCNEGKLNEAKVLLDEMLSSNLKPNVITYNALINGYCKKKLLEEARELFDNIGKQGL 404

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNVIT++TL++G C+ G    A  L +++    G       PN  TY  +I G C+EG 
Sbjct: 405 TPNVITFNTLLHGYCKFGKMEEAF-LLQKVMLEKGFL-----PNASTYNCLIVGFCREGK 458

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++ K L  +M+ + +  D VTYN LI  +C   +  +A  L+ EM+D+G++P  +T+N+
Sbjct: 459 MEEVKNLLNEMQCRGVKADTVTYNILISAWCEKKEPKKAARLIDEMLDKGLKPSHLTYNI 518

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C  G +  A  L + M   G   N  T++ L+ G+C  G++  A  L   M   G
Sbjct: 519 LLNGYCMEGNLRAALNLRKQMEKEGRWANVVTYNVLIQGYCRKGKLEDANGLLNEMLEKG 578



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 68/122 (55%), Gaps = 5/122 (4%)

Query: 258 TIIDGLCKEGFVDKAK-----ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
           +II  +    +V+ +K     E F +  D      V++ N L+      N++     +  
Sbjct: 160 SIIADMLVLAYVENSKTVLGLEAFKRAGDYRYKLSVLSCNPLLSALVKENEFGGVEFVYK 219

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM+ + + P+++TFN +++ LCK GK+++A  +++ M + G  PN  T++TL+DG+C  G
Sbjct: 220 EMIRRKISPNLITFNTVINGLCKVGKLNKAGDVVDDMKVWGFWPNVVTYNTLIDGYCKMG 279

Query: 373 RV 374
           RV
Sbjct: 280 RV 281



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 22/81 (27%), Positives = 42/81 (51%)

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           D   +  V++ N ++  L K  +      + + MI R ++PN  TF+T+++G C  G++N
Sbjct: 188 DYRYKLSVLSCNPLLSALVKENEFGGVEFVYKEMIRRKISPNLITFNTVINGLCKVGKLN 247

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A ++   M+  G    V +Y
Sbjct: 248 KAGDVVDDMKVWGFWPNVVTY 268


>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
          Length = 650

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 165/321 (51%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N     L +  H    L +   +   G  PD++TYNI++NC CK G++     +
Sbjct: 192 PDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYNIVVNCLCKNGQLEEAKGI 251

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     PD   F +LI  LC  +R+ EA  L  ++   G  P+V T++ LIN LC+
Sbjct: 252 LNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCK 311

Query: 225 TGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTVT 255
            G   +AL LFEEM N                    GK G             C  +T+T
Sbjct: 312 VGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTIT 371

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y TIIDGLCK+  +++A+E+F QM  + I+ + +T+N+LI G C     ++A  L+ +M+
Sbjct: 372 YNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI 431

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+QP+ +T+N I+   CK G + +A+ +LE M   G   +  T+ TL++G C  GR  
Sbjct: 432 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 491

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A ++   M   G + T  +Y
Sbjct: 492 VALKVLRGMRIKGMRPTPKAY 512



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + +FN L   L +     T + + + ++S G+ PD  T+  L+  F + G 
Sbjct: 80  MGARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGS 139

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     V  R+L    +   V    LI G C   R+ +A     +  A G +P+ ITY+T
Sbjct: 140 IEAALRVKARMLEMGCSATKVTVNVLINGYCKLGRVEDALGYIQQEIADGFEPDQITYNT 199

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
            +NGLC+  H   AL + + M            P+  TY  +++ LCK G +++AK +  
Sbjct: 200 FVNGLCQNDHVGHALKVMDVMVQEGHD------PDVFTYNIVVNCLCKNGQLEEAKGILN 253

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM D+   PD+ T+N+LI   C  N   EA  L  ++  +GV PDV TFN++++ LCK G
Sbjct: 254 QMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNILINALCKVG 313

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               A RL E M   G  P+  T++TL+D  C  G++  A +L   MES GC  +  +Y
Sbjct: 314 DPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 372



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M++ R   P +T+FN L   L      +  L L +++   G+ PD+YT+NIL
Sbjct: 247 EAKGILNQMVD-RGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVKGVSPDVYTFNIL 305

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G       +   +  S  TPD V + +LI  LC+  ++ +A  L   +++ GC
Sbjct: 306 INALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKDMESTGC 365

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             + ITY+T+I+GLC+      A  +F++M   G  +       N +T+ T+IDGLCK+ 
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISR-------NAITFNTLIDGLCKDK 418

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A EL  QM  + + P+ +TYNS++  +C   D  +A  +L  M   G + DVVT+ 
Sbjct: 419 KIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYG 478

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK G+   A ++L  M ++G+ P    ++ ++        +  A  LF  M  +
Sbjct: 479 TLINGLCKAGRTQVALKVLRGMRIKGMRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEV 538

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 539 GEPPDALTY 547



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 122/250 (48%), Gaps = 29/250 (11%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D V +  L+  L   S++    ++++++ A G KP+V+T++TL+  LCR      A+ + 
Sbjct: 53  DTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQVRTAVLML 112

Query: 236 EEMA---------------NGNGKFGVV--------------CKPNTVTYTTIIDGLCKE 266
           EEM+                G  + G +              C    VT   +I+G CK 
Sbjct: 113 EEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVLINGYCKL 172

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+ A     Q       PD +TYN+ ++G C  +    A  ++  M+ +G  PDV T+
Sbjct: 173 GRVEDALGYIQQEIADGFEPDQITYNTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTY 232

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N++++ LCKNG+++EA  +L  M+ RG  P+ +TF+TL+   C   R+  A +L   +  
Sbjct: 233 NIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTV 292

Query: 387 MGCKHTVFSY 396
            G    V+++
Sbjct: 293 KGVSPDVYTF 302



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/262 (25%), Positives = 123/262 (46%), Gaps = 8/262 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F +++  G+  +  T+N LI+  CK  ++   F 
Sbjct: 366 PRSTITYNTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFE 425

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ +++     P+ + + S++   C +  I +AA +   + A G + +V+TY TLINGLC
Sbjct: 426 LINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLC 485

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL +   M           +P    Y  ++  L +   +  A  LF +M +  
Sbjct: 486 KAGRTQVALKVLRGMRIKG------MRPTPKAYNPVLQSLFRRNNIRDALSLFREMAEVG 539

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD +TY  +  G C       EA   ++EM+D+G  P+  +F ++ + L   G  D  
Sbjct: 540 EPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRMLAEGLLNLGMDDYF 599

Query: 343 SRLLELMILRGVNPNTSTFSTL 364
            R +E+ I+  V+   S  S +
Sbjct: 600 IRAIEI-IMEKVDLRESDVSAI 620



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 67/137 (48%), Gaps = 2/137 (1%)

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + +D    +   D A +L L        I  D V YN L++     +       +  EM 
Sbjct: 22  SFLDSYEGQQLFDDAVDLILNQLQPLFGIQADTVVYNHLLNVLVEGSKMKLLESVYSEMG 81

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G++PDVVTFN +M  LC+  ++  A  +LE M  RGV P+ +TF+TLM GF   G + 
Sbjct: 82  ARGIKPDVVTFNTLMKALCRAHQVRTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIE 141

Query: 376 HAKELFVSMESMGCKHT 392
            A  +   M  MGC  T
Sbjct: 142 AALRVKARMLEMGCSAT 158



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 2/133 (1%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           FG+  + +TV Y  +++ L +   +   + ++ +M  + I PDVVT+N+L+   C A+  
Sbjct: 48  FGI--QADTVVYNHLLNVLVEGSKMKLLESVYSEMGARGIKPDVVTFNTLMKALCRAHQV 105

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  +L EM  +GV PD  TF  +M    + G ++ A R+   M+  G +    T + L
Sbjct: 106 RTAVLMLEEMSSRGVAPDETTFTTLMQGFVEEGSIEAALRVKARMLEMGCSATKVTVNVL 165

Query: 365 MDGFCLTGRVNHA 377
           ++G+C  GRV  A
Sbjct: 166 INGYCKLGRVEDA 178


>gi|302799689|ref|XP_002981603.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
 gi|300150769|gb|EFJ17418.1| hypothetical protein SELMODRAFT_114722 [Selaginella moellendorffii]
          Length = 609

 Score =  185 bits (470), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 104/298 (34%), Positives = 163/298 (54%), Gaps = 11/298 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN--STGLF-PDLYT 144
           +EA  ++  +L        ++S  L+ G L + +       LF+ +     G + PD+ T
Sbjct: 133 DEALKLYKEILTSSCRLDAVSSSALITG-LCRERRIGEAYELFQEMEMREDGAWKPDVVT 191

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           Y  LI+ FCK G +     +LG +      P+ V ++SL+ GLC    + +A  LF ++ 
Sbjct: 192 YTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT 251

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           + GC PNV+TY+TLI+GLC       A  L +EM          C  +TV+Y  ++DG C
Sbjct: 252 SKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMT------ATCCPADTVSYNALLDGYC 305

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDV 323
           + G +++AK+LF +M  K+  PD +TY  L+ GFC A+   EA  LL  M    G+ PDV
Sbjct: 306 RLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDV 365

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           VT+++++    +  +  EA+  ++ MI R V PN  T+S+L+DG C  GRVNHA E+ 
Sbjct: 366 VTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVNHAMEVL 423



 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 109/319 (34%), Positives = 160/319 (50%), Gaps = 36/319 (11%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + +++ L   L K    D  L LF+R+ S G  P++ TY  LI+  C   
Sbjct: 214 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 273

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +V    +++  +  +C   D V++ +L+ G C   RI EA  LF ++ A  C P+ ITY+
Sbjct: 274 KVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYT 333

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNG------KFGVVCK-------------------- 250
            L+ G C       A  L E M    G       + +V                      
Sbjct: 334 CLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIA 393

Query: 251 ----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-PDVVTYNSLIHGFCYANDWN 305
               PN VTY+++IDGLCK G V+ A E+      KN++ PDVVTY  +I G C  +   
Sbjct: 394 RNVAPNAVTYSSLIDGLCKAGRVNHAMEVL-----KNVDKPDVVTYTIVIEGLCGTDRTE 448

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           EA  LL EM+++ V+P V TFN ++  LC+ G MDEA +LL  M   G+ P   T++TL+
Sbjct: 449 EALTLLEEMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLL 508

Query: 366 DGFCLTGRVNHAKELFVSM 384
           +GF  TGR+  A ELF  M
Sbjct: 509 EGFSRTGRMEIAYELFEVM 527



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 164/308 (53%), Gaps = 10/308 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I   M+      P + ++  +   L +    D    + + +   G+ PD +T++ LI  +
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF---GCK 209
           C   +V     +   IL S    DAV+ ++LI GLC E RI EA  LF +++       K
Sbjct: 127 CNARKVDEALKLYKEILTSSCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAWK 186

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V+TY+ LI+G C++G+   A+ +   M       G  C PN VTY++++ GLCK G +
Sbjct: 187 PDVVTYTALIDGFCKSGNLEKAMKMLGVME------GRKCVPNVVTYSSLLHGLCKAGDL 240

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A +LF +M  K   P+VVTY +LIHG C A+  + A  L+ EM       D V++N +
Sbjct: 241 DQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNAL 300

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME-SMG 388
           +D  C+ G+++EA +L + M  +   P+  T++ L+ GFC   R+  A+ L  +M+ + G
Sbjct: 301 LDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAG 360

Query: 389 CKHTVFSY 396
               V +Y
Sbjct: 361 IDPDVVTY 368



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 162/311 (52%), Gaps = 6/311 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYN 146
           ++A+ +   M + +   P L +++ +     K    D    + + +    G+ PD+ TY 
Sbjct: 26  SKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGMAPDVVTYT 85

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++  C+ G++     ++  +      PD   F++LI G C   ++ EA  L+ ++   
Sbjct: 86  SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 145

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCK 265
            C+ + ++ S LI GLCR      A  LF+EM    +G +    KP+ VTYT +IDG CK
Sbjct: 146 SCRLDAVSSSALITGLCRERRIGEAYELFQEMEMREDGAW----KPDVVTYTALIDGFCK 201

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G ++KA ++   M+ +   P+VVTY+SL+HG C A D ++A  L   M  +G  P+VVT
Sbjct: 202 SGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVT 261

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +  ++  LC   K+D A  L++ M       +T +++ L+DG+C  GR+  AK+LF  M 
Sbjct: 262 YTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSYNALLDGYCRLGRIEEAKQLFKEMA 321

Query: 386 SMGCKHTVFSY 396
           +  C     +Y
Sbjct: 322 AKSCLPDRITY 332



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 156/297 (52%), Gaps = 11/297 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P   ++N++   L K +       + K + +   + PDL TY+ +IN FCK G +     
Sbjct: 7   PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 66

Query: 164 VLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           +L  ++ R    PD V +TS++ GLC + ++  A  +  ++K  G +P+  T+S LI G 
Sbjct: 67  ILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 126

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-- 280
           C       AL L++E+   +      C+ + V+ + +I GLC+E  + +A ELF +M+  
Sbjct: 127 CNARKVDEALKLYKEILTSS------CRLDAVSSSALITGLCRERRIGEAYELFQEMEMR 180

Query: 281 -DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
            D    PDVVTY +LI GFC + +  +A  +L  M  +   P+VVT++ ++  LCK G +
Sbjct: 181 EDGAWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDL 240

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D+A  L   M  +G  PN  T++TL+ G C   +V+ A+ L   M +  C     SY
Sbjct: 241 DQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPADTVSY 297



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 139/328 (42%), Gaps = 53/328 (16%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    S+N L     +    +    LFK + +    PD  TY  L+  FC   R+     
Sbjct: 291 PADTVSYNALLDGYCRLGRIEEAKQLFKEMAAKSCLPDRITYTCLVRGFCNASRLEEARF 350

Query: 164 VLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           +L  +  +    PD V ++ ++ G     R +EAA    ++ A    PN +TYS+LI+GL
Sbjct: 351 LLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGL 410

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A+ + +           V KP+ VTYT +I+GLC     ++A  L  +M +K
Sbjct: 411 CKAGRVNHAMEVLKN----------VDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNK 460

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE---------- 332
            + P V T+NS+I   C   D +EA  LL+ M   G++P +VT+  +++           
Sbjct: 461 RVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIA 520

Query: 333 --------------------------------LCKNGKMDEASRLLELMILRGVNPNTST 360
                                           LCK  ++D+A  ++E +  R   P    
Sbjct: 521 YELFEVMRRKAKKSSSAANLVPEQAFSALIRGLCKAREIDKAMAVVEELRSRECEPAEED 580

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMG 388
              ++DG    GR   A +L  S+  +G
Sbjct: 581 CLAIVDGLLRAGRTEEAGKLINSISKVG 608



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/261 (23%), Positives = 107/261 (40%), Gaps = 42/261 (16%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M       P + +++++    ++ K +       + + +  + P+  TY+ 
Sbjct: 346 EEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 405

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL---- 203
           LI+  CK GRV+H       +L++   PD V +T +I+GLC   R  EA  L  ++    
Sbjct: 406 LIDGLCKAGRVNHAM----EVLKNVDKPDVVTYTIVIEGLCGTDRTEEALTLLEEMVNKR 461

Query: 204 -------------------------------KAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                           A G +P ++TY+TL+ G  RTG   +A 
Sbjct: 462 VEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAY 521

Query: 233 NLFEEMANGNGKFGVVCK--PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
            LFE M     K        P    ++ +I GLCK   +DKA  +  +++ +   P    
Sbjct: 522 ELFEVMRRKAKKSSSAANLVPEQ-AFSALIRGLCKAREIDKAMAVVEELRSRECEPAEED 580

Query: 291 YNSLIHGFCYANDWNEANCLL 311
             +++ G   A    EA  L+
Sbjct: 581 CLAIVDGLLRAGRTEEAGKLI 601



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/115 (33%), Positives = 71/115 (61%), Gaps = 2/115 (1%)

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTFNVIMDELCKNGKMDEA 342
           + P+  TYN +++G C A   ++A  +L EM D + V PD+VT++ +++  CK G+MD A
Sbjct: 5   VAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRA 64

Query: 343 SRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +L  M+ R G+ P+  T+++++DG C  G+++ A E+   M+  G +   F++
Sbjct: 65  CEILREMVTRDGMAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTF 119



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 1/71 (1%)

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M + V P+  T+NV+++ LCK     +A  +L E+   + V P+  T+ST+++GFC  G 
Sbjct: 1   MREFVAPNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGE 60

Query: 374 VNHAKELFVSM 384
           ++ A E+   M
Sbjct: 61  MDRACEILREM 71


>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  185 bits (469), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 160/284 (56%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K +       L + +   GL P+L +YN++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +  + PD V F +LI G C      +A  L  ++   G  PNV+TY+TLIN +C+
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+   ++M +          PN  TYTT+IDG  ++GF+ +A ++  +M +   
Sbjct: 356 AGNLNRAMEFLDQMRDRG------LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P ++TYN+LI+G C      +A+ LL EM+++G  PDVV+++ I+   C+N ++++A +
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M+ +G++P+ +T+S+L+ G C   R+    +LF  M S+G
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 166/322 (51%), Gaps = 30/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + S+N +   + +TK    +   +FK +  +G+ P++YTYNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLF 224

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             G + R+   P+ V + ++I   C   +I EA  L   +   G  PN+I+Y+ +INGLC
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 224 RTGHTIVALNLFEEMAN--------------------GNGKFGVVCK---------PNTV 254
           R G       + EEM+                     GN    +V           PN V
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYTT+I+ +CK G +++A E   QM+D+ ++P+  TY +LI GF       +A  ++ EM
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           ++ G  P ++T+N +++  C  G+M++AS LL+ MI RG  P+  ++ST++ GFC    +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +L V M + G    V +Y
Sbjct: 465 EKAFQLKVEMVAKGISPDVATY 486



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 23/302 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K  + +  +    ++   GL P+  TY  LI+ F + G +   + +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ + FTP  + + +LI G C   R+ +A+ L  ++   G  P+V++YST+I+G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                 A  L  EM A G         P+  TY+++I GLCK+  + +  +LF +M    
Sbjct: 461 NQELEKAFQLKVEMVAKG-------ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD VTY SLI+ +C   D ++A  L  EM+ +G  PD+VT+NV+++   K  +  EA 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 344 RLLELMILRGVNPNTSTFSTLMD---------------GFCLTGRVNHAKELFVSMESMG 388
           RLL  ++     PN  T++TL+D               GFC+ G +N A  +  SM   G
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 389 CK 390
            K
Sbjct: 634 YK 635



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 6/287 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R   P   +FN L        ++   L L   +   GL P++ TY  LIN  CK G 
Sbjct: 299 MSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN 358

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           ++     L ++      P+   +T+LI G   +  + +A  +  ++   G  P +ITY+ 
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LING C  G    A  L +EM     + G +  P+ V+Y+TII G C+   ++KA +L +
Sbjct: 419 LINGHCILGRMEDASGLLQEMI----ERGFI--PDVVSYSTIISGFCRNQELEKAFQLKV 472

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  K I+PDV TY+SLI G C      E   L  EM+  G+ PD VT+  +++  C  G
Sbjct: 473 EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEG 532

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +D+A RL + MI +G +P+  T++ L++GF    R   AK L + +
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG---RVSHGFVVLG 166
           F+L+    A+    +  LS+     S G  P + +YN +++   +     +++ G  +  
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEG--IFK 192

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++ S  +P+   +  LI+G C    +      F +++  GC PNV+TY+T+I+  C+  
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLFFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L   MA           PN ++Y  +I+GLC+EG + +  E+  +M  +   P
Sbjct: 253 KIGEAFKLLRLMALKG------LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D VT+N+LI+G+C   ++++A  L  EM+  G+ P+VVT+  +++ +CK G ++ A   L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  RG++PN  T++TL+DGF   G +  A ++   M   G   T+ +Y
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 143/336 (42%), Gaps = 57/336 (16%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A    D M + R   P   ++  L    ++         + K +   G  P + TYN 
Sbjct: 360 NRAMEFLDQMRD-RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C +GR+     +L  ++   F PD V+++++I G C    + +A  L  ++ A G
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TYS+LI GLC+        +LF+EM        +   P+ VTYT++I+  C EG
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEM------LSLGLPPDEVTYTSLINAYCIEG 532

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGF----------------------------- 298
            +DKA  L  +M  K  +PD+VTYN LI+GF                             
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYN 592

Query: 299 ---------------------CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
                                C     NEA+ +L  M+ +G + +   +NVI+    K G
Sbjct: 593 TLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVG 652

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
            +++A  L + M+  G  P++ T   L       G+
Sbjct: 653 NIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGK 688



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 44/287 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L          +    L + +   G  PD+ +Y+ +I+ FC+   +   F +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    +PD   ++SLI+GLC + R+ E   LF ++ + G  P+ +TY++LIN  C 
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G    AL L +EM                NG  K     +              PN +T
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 256 YTTIID---------------GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
           Y T+ID               G C +G +++A  +   M  K    +   YN +IHG   
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
             +  +A  L  EM+  G  P  VT   +   L   GK  E ++LL+
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLD 697



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 30/247 (12%)

Query: 36  SSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFD 95
           S   +N+  +     K++   +    D A+    ++  CK    G++  +        F 
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL--------FQ 507

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
            ML++   PP   ++  L          D  L L   +   G  PD+ TYN+LIN F K 
Sbjct: 508 EMLSL-GLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQ 566

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLI---------------KGLCAESRIMEAAALF 200
            R      +L ++L     P+ + + +LI               KG C +  + EA  + 
Sbjct: 567 SRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVL 626

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +   G K N   Y+ +I+G  + G+   A NL++EM +          P++VT   + 
Sbjct: 627 ESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG------FAPHSVTIMALA 680

Query: 261 DGLCKEG 267
             L  EG
Sbjct: 681 KSLYHEG 687


>gi|224128023|ref|XP_002329235.1| predicted protein [Populus trichocarpa]
 gi|222871016|gb|EEF08147.1| predicted protein [Populus trichocarpa]
          Length = 501

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 105/301 (34%), Positives = 168/301 (55%), Gaps = 15/301 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++ML+ +P P  +    LL   +   ++YD V+SL + +   GL P+ YT NI
Sbjct: 66  DDALASFNHMLHRKPLPCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNI 125

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LINCFCK+  V  GF VL ++++    PD V FT+LI GLC   +  +A  LF +    G
Sbjct: 126 LINCFCKLQHVDLGFSVLAKVIKLGLQPDVVPFTTLINGLCKVGKFSQAVELFDETVERG 185

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
                  Y++LI+GLC       A  +  EM + N        P+ VT+  ++D  CKEG
Sbjct: 186 -------YNSLIHGLCNCSQWKEASAILNEMTSLN------IMPDIVTFNVLVDTFCKEG 232

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A+ +   M + ++  DVVTYNSL++G     +  EA  L   M+ +G +P+V ++N
Sbjct: 233 KVSEAQGVLKTMTEMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYN 292

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  CK   +DEA +L   MI +G+ PN  +++T   GFC  G++  A+EL  +M + 
Sbjct: 293 ILINGYCKAEMIDEAKQLFNEMIHQGLTPNIVSYNT--HGFCQLGKLREAQELNENMHTN 350

Query: 388 G 388
           G
Sbjct: 351 G 351



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/223 (35%), Positives = 121/223 (54%), Gaps = 14/223 (6%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           P  + FT L+  +    +  +A  +L   ++  G  PN  T + LIN  C+  H  +  +
Sbjct: 82  PCIIQFTKLLSAIVKMRQYYDAVISLSRPMELAGLSPNTYTLNILINCFCKLQHVDLGFS 141

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +  ++     K G+  +P+ V +TT+I+GLCK G   +A ELF +  ++        YNS
Sbjct: 142 VLAKVI----KLGL--QPDVVPFTTLINGLCKVGKFSQAVELFDETVERG-------YNS 188

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LIHG C  + W EA+ +L EM    + PD+VTFNV++D  CK GK+ EA  +L+ M    
Sbjct: 189 LIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMTEMS 248

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           V  +  T+++LM G  L   V  A++LF  M + GCK  VFSY
Sbjct: 249 VELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSY 291



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 71/255 (27%), Positives = 111/255 (43%), Gaps = 46/255 (18%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L     +    ++   + S  + PD+ T+N+L++ FCK G+VS    VL  + 
Sbjct: 186 YNSLIHGLCNCSQWKEASAILNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEAQGVLKTMT 245

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                 D V + SL+ G      ++EA  LF  +   GCKPNV +Y+ LING C+     
Sbjct: 246 EMSVELDVVTYNSLMYGHSLWMEVVEARKLFGFMITKGCKPNVFSYNILINGYCKAEMID 305

Query: 230 VALNLFEEMANGNGKFGVV-------CK--------------------PNTVTYTTIIDG 262
            A  LF EM +      +V       C+                    P+  TY+ ++DG
Sbjct: 306 EAKQLFNEMIHQGLTPNIVSYNTHGFCQLGKLREAQELNENMHTNGNLPDLCTYSILLDG 365

Query: 263 LCKEG-------------------FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
            CK+G                    +D+A E F +M++    P+  +YN +I GF    D
Sbjct: 366 FCKQGNHIAARKLFSELFVQGLQRLLDEALETFRKMEEDGCPPNEWSYNVIIRGFLRHRD 425

Query: 304 WNEANCLLIEMMDQG 318
            + A  L+ EM D+G
Sbjct: 426 ESRAVQLIGEMRDRG 440


>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Cucumis sativus]
          Length = 749

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 160/284 (56%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K +       L + +   GL P+L +YN++IN  C+ G++     +
Sbjct: 236 PNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLCREGQMKETSEI 295

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +  + PD V F +LI G C      +A  L  ++   G  PNV+TY+TLIN +C+
Sbjct: 296 LEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCK 355

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+   ++M +          PN  TYTT+IDG  ++GF+ +A ++  +M +   
Sbjct: 356 AGNLNRAMEFLDQMRDRG------LHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGF 409

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P ++TYN+LI+G C      +A+ LL EM+++G  PDVV+++ I+   C+N ++++A +
Sbjct: 410 TPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQ 469

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M+ +G++P+ +T+S+L+ G C   R+    +LF  M S+G
Sbjct: 470 LKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 166/322 (51%), Gaps = 30/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + S+N +   + +TK    +   +FK +  +G+ P++YTYNILI  FC  G +  G  
Sbjct: 165 PGVLSYNAILDAVIRTKQSVKIAEGIFKEMVESGVSPNVYTYNILIRGFCTAGNLEMGLX 224

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             G + R+   P+ V + ++I   C   +I EA  L   +   G  PN+I+Y+ +INGLC
Sbjct: 225 FFGEMERNGCLPNVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLISYNVVINGLC 284

Query: 224 RTGHTIVALNLFEEMAN--------------------GNGKFGVVCK---------PNTV 254
           R G       + EEM+                     GN    +V           PN V
Sbjct: 285 REGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVV 344

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYTT+I+ +CK G +++A E   QM+D+ ++P+  TY +LI GF       +A  ++ EM
Sbjct: 345 TYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEM 404

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           ++ G  P ++T+N +++  C  G+M++AS LL+ MI RG  P+  ++ST++ GFC    +
Sbjct: 405 VENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQEL 464

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +L V M + G    V +Y
Sbjct: 465 EKAFQLKVEMVAKGISPDVATY 486



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 154/302 (50%), Gaps = 23/302 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K  + +  +    ++   GL P+  TY  LI+ F + G +   + +
Sbjct: 341 PNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQI 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ + FTP  + + +LI G C   R+ +A+ L  ++   G  P+V++YST+I+G CR
Sbjct: 401 MKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCR 460

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                 A  L  EM A G         P+  TY+++I GLCK+  + +  +LF +M    
Sbjct: 461 NQELEKAFQLKVEMVAKG-------ISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLG 513

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD VTY SLI+ +C   D ++A  L  EM+ +G  PD+VT+NV+++   K  +  EA 
Sbjct: 514 LPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAK 573

Query: 344 RLLELMILRGVNPNTSTFSTLMD---------------GFCLTGRVNHAKELFVSMESMG 388
           RLL  ++     PN  T++TL+D               GFC+ G +N A  +  SM   G
Sbjct: 574 RLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKG 633

Query: 389 CK 390
            K
Sbjct: 634 YK 635



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 147/287 (51%), Gaps = 6/287 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R   P   +FN L        ++   L L   +   GL P++ TY  LIN  CK G 
Sbjct: 299 MSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGN 358

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           ++     L ++      P+   +T+LI G   +  + +A  +  ++   G  P +ITY+ 
Sbjct: 359 LNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LING C  G    A  L +EM     + G +  P+ V+Y+TII G C+   ++KA +L +
Sbjct: 419 LINGHCILGRMEDASGLLQEMI----ERGFI--PDVVSYSTIISGFCRNQELEKAFQLKV 472

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  K I+PDV TY+SLI G C      E   L  EM+  G+ PD VT+  +++  C  G
Sbjct: 473 EMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCIEG 532

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +D+A RL + MI +G +P+  T++ L++GF    R   AK L + +
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKL 579



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG---RVSHGFVVLG 166
           F+L+    A+    +  LS+     S G  P + +YN +++   +     +++ G  +  
Sbjct: 135 FDLVVKSCARVNLINKALSIVNLAKSYGFMPGVLSYNAILDAVIRTKQSVKIAEG--IFK 192

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++ S  +P+   +  LI+G C    +      F +++  GC PNV+TY+T+I+  C+  
Sbjct: 193 EMVESGVSPNVYTYNILIRGFCTAGNLEMGLXFFGEMERNGCLPNVVTYNTIIDAYCKLR 252

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L   MA           PN ++Y  +I+GLC+EG + +  E+  +M  +   P
Sbjct: 253 KIGEAFKLLRLMALKG------LNPNLISYNVVINGLCREGQMKETSEILEEMSKRRYVP 306

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D VT+N+LI+G+C   ++++A  L  EM+  G+ P+VVT+  +++ +CK G ++ A   L
Sbjct: 307 DRVTFNTLINGYCNVGNFHQALVLHAEMVKNGLSPNVVTYTTLINSMCKAGNLNRAMEFL 366

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  RG++PN  T++TL+DGF   G +  A ++   M   G   T+ +Y
Sbjct: 367 DQMRDRGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITY 416



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 143/336 (42%), Gaps = 57/336 (16%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A    D M + R   P   ++  L    ++         + K +   G  P + TYN 
Sbjct: 360 NRAMEFLDQMRD-RGLHPNGRTYTTLIDGFSQQGFLKQAYQIMKEMVENGFTPTIITYNA 418

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C +GR+     +L  ++   F PD V+++++I G C    + +A  L  ++ A G
Sbjct: 419 LINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQLKVEMVAKG 478

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TYS+LI GLC+        +LF+EM        +   P+ VTYT++I+  C EG
Sbjct: 479 ISPDVATYSSLIQGLCKQRRLGEVCDLFQEM------LSLGLPPDEVTYTSLINAYCIEG 532

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGF----------------------------- 298
            +DKA  L  +M  K  +PD+VTYN LI+GF                             
Sbjct: 533 DLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEITYN 592

Query: 299 ---------------------CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
                                C     NEA+ +L  M+ +G + +   +NVI+    K G
Sbjct: 593 TLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSKVG 652

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
            +++A  L + M+  G  P++ T   L       G+
Sbjct: 653 NIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGK 688



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 120/287 (41%), Gaps = 44/287 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L          +    L + +   G  PD+ +Y+ +I+ FC+   +   F +
Sbjct: 411 PTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAFQL 470

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    +PD   ++SLI+GLC + R+ E   LF ++ + G  P+ +TY++LIN  C 
Sbjct: 471 KVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDEVTYTSLINAYCI 530

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G    AL L +EM                NG  K     +              PN +T
Sbjct: 531 EGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQSRTKEAKRLLLKLLYEESVPNEIT 590

Query: 256 YTTIID---------------GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
           Y T+ID               G C +G +++A  +   M  K    +   YN +IHG   
Sbjct: 591 YNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVLESMLQKGYKLNEEVYNVIIHGHSK 650

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
             +  +A  L  EM+  G  P  VT   +   L   GK  E ++LL+
Sbjct: 651 VGNIEKAYNLYKEMLHSGFAPHSVTIMALAKSLYHEGKEVELNQLLD 697



 Score = 66.2 bits (160), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/247 (23%), Positives = 98/247 (39%), Gaps = 30/247 (12%)

Query: 36  SSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFD 95
           S   +N+  +     K++   +    D A+    ++  CK    G++  +        F 
Sbjct: 456 SGFCRNQELEKAFQLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDL--------FQ 507

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
            ML++   PP   ++  L          D  L L   +   G  PD+ TYN+LIN F K 
Sbjct: 508 EMLSL-GLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLINGFNKQ 566

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLI---------------KGLCAESRIMEAAALF 200
            R      +L ++L     P+ + + +LI               KG C +  + EA  + 
Sbjct: 567 SRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNEADRVL 626

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +   G K N   Y+ +I+G  + G+   A NL++EM +          P++VT   + 
Sbjct: 627 ESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSG------FAPHSVTIMALA 680

Query: 261 DGLCKEG 267
             L  EG
Sbjct: 681 KSLYHEG 687


>gi|218197600|gb|EEC80027.1| hypothetical protein OsI_21710 [Oryza sativa Indica Group]
          Length = 694

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 160/294 (54%), Gaps = 6/294 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P L +FN +   L K    +    +F  +   GL PD+ +YN L++ +CK+G +    
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   + +    PD V FTSLI   C    + +A AL  +++  G + N +T++ LI+G 
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    AL   EEM     K G+  +P+ V Y  +I+G CK G +D A+EL  +M+ K
Sbjct: 339 CKKGFLDDALLAVEEMR----KCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PDVVTY+++I G+C   + + A  L  +M+ +GV PD +T++ ++  LC+  ++++A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L E M+  GV P+  T++TL+DG C  G V  A  L   M   G    V +Y
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTY 506



 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 159/293 (54%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFV 163
           P   ++N L     +    D    +   +   G   P+L T+N ++N  CK GR+     
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 244

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V   ++R    PD V++ +L+ G C    + E+ A+F+++   G  P+V+T+++LI+  C
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 304

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+   A+ L  +M     +       N VT+T +IDG CK+GF+D A     +M+   
Sbjct: 305 KAGNLEQAVALVAQMRERGLRM------NEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P VV YN+LI+G+C     + A  L+ EM  + V+PDVVT++ I+   CK G +D A 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L + M+ +GV P+  T+S+L+ G C   R+N A ELF +M  +G +   F+Y
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 11/235 (4%)

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +LR    P+   +  L++ LCA  R+ EA  +   ++  GC PN +TY+TL+   CR
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 225 TGHTIVA---LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            G    A   ++L  E  N         KPN VT+ ++++GLCK G ++ A+++F +M  
Sbjct: 200 AGELDGAERVVSLMREEGNA--------KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR 251

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + + PDVV+YN+L+ G+C     +E+  +  EM  +G+ PDVVTF  ++   CK G +++
Sbjct: 252 EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQ 311

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L+  M  RG+  N  TF+ L+DGFC  G ++ A      M   G + +V  Y
Sbjct: 312 AVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 366



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E+  +F  M   R   P + +F  L     K  + +  ++L  ++   GL  +  T+  
Sbjct: 275 HESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK G +    + +  + +    P  V + +LI G C   R+  A  L  +++A  
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V+TYST+I+G C+ G+   A  L ++M     K GV+  P+ +TY+++I GLC+E 
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKML----KKGVL--PDAITYSSLIRGLCEEK 447

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A ELF  M    + PD  TY +LI G C   +  +A  L  EM+ +GV PDVVT++
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM---------------DGFCLTG 372
           V+++ L K+ +  EA RLL  +      P+   +  LM                GFC+ G
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 567

Query: 373 RVNHAKELFVSM 384
            +  A +++ SM
Sbjct: 568 LMKEADKVYQSM 579



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 149/288 (51%), Gaps = 21/288 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L     K    D    L + + +  + PD+ TY+ +I+ +CK+G +   F +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+    PDA+ ++SLI+GLC E R+ +A  LF  +   G +P+  TY+TLI+G C+
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 480

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L +EM     + GV+  P+ VTY+ +I+GL K     +A  L  ++  ++ 
Sbjct: 481 EGNVEKALSLHDEMI----RKGVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 534

Query: 285 NPDVVTYNSL---------------IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            PD + Y++L               + GFC      EA+ +   M+D+  + D   ++++
Sbjct: 535 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 594

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +   C+ G + +A    + M+  G +PN+++  +L+ G    G V  A
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 22/287 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +   ML     P  +T  +L+ G L + K  +    LF+ +   G+ PD +TY  
Sbjct: 415 DSAFQLNQKMLKKGVLPDAITYSSLIRG-LCEEKRLNDACELFENMLQLGVQPDEFTYTT 473

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V     +   ++R    PD V ++ LI GL   +R  EA  L  KL    
Sbjct: 474 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 533

Query: 208 CKPNVITYSTL---------------INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
             P+ I Y  L               + G C  G    A  +++ M + N K       +
Sbjct: 534 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL------D 587

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y+ +I G C+ G V KA     QM     +P+  +  SL+ G        EA+  + 
Sbjct: 588 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 647

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
           +++      D      ++D   K G +D    +L  M   G+ P++ 
Sbjct: 648 DLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSSG 694


>gi|357118714|ref|XP_003561096.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At5g39710-like [Brachypodium distachyon]
          Length = 718

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 97/292 (33%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +    D    L   +   G+ P L T+N ++N  CK GR+     +
Sbjct: 188 PNVVTYNTLVAAFCRAGEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKM 247

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R   TPD V++ +L+ G C    + EA A+F ++   G  P+V+T+++LI+ +CR
Sbjct: 248 FDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCR 307

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+ L  +M           + N  T+T +IDG C+ GF+D A     +M++  I
Sbjct: 308 AGNLERAVALVGQMRERG------LRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRI 361

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P VV YN LI+G+C     +EA  L+ EM  +G++PDVVT++ I+   CK G  D A  
Sbjct: 362 QPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFE 421

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M+ +GV P+  T+S+L+ G C   R+  A ELF  M  +G +   F+Y
Sbjct: 422 LNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTY 473



 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN +   L K    +    +F  +   GL PD  +YN L++ +CK G +     V
Sbjct: 223 PSLVTFNTVVNGLCKAGRMEDARKMFDEMAREGLTPDGVSYNTLVSGYCKAGCLHEALAV 282

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    PD V FTSLI  +C    +  A AL  +++  G + N  T++ LI+G CR
Sbjct: 283 FAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTALIDGFCR 342

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL   +EM           +P+ V Y  +I+G CK G +D+A+EL  +M+ K +
Sbjct: 343 NGFLDDALLAMKEMRECR------IQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKGM 396

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY++++ G+C   D + A  L  +M+ +GV PD +T++ ++  LC+  ++ +A  
Sbjct: 397 KPDVVTYSTILSGYCKIGDTDSAFELNRKMLKKGVVPDAITYSSLIRGLCEERRLGDACE 456

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E M+  G+ P+  T++TL+DG C  G V  A  L   M   G    V +Y
Sbjct: 457 LFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTY 508



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 159/312 (50%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M   +   P + +F  L   + +  + +  ++L  ++   GL  + +T+  
Sbjct: 277 HEALAVFAEMAQ-KGVVPDVVTFTSLIHAMCRAGNLERAVALVGQMRERGLRMNEFTFTA 335

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FC+ G +    + +  +      P  V +  LI G C   R+ EA  L  +++A G
Sbjct: 336 LIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCKLGRMDEARELIHEMEAKG 395

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V+TYST+++G C+ G T  A  L  +M     K GVV  P+ +TY+++I GLC+E 
Sbjct: 396 MKPDVVTYSTILSGYCKIGDTDSAFELNRKML----KKGVV--PDAITYSSLIRGLCEER 449

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A ELF +M    + PD  TY +LI G C   +  +A  L  EM+ +GV PDVVT++
Sbjct: 450 RLGDACELFEKMLQLGLQPDEFTYTTLIDGHCKEGNVQKALSLHDEMIKKGVLPDVVTYS 509

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM---------------DGFCLTG 372
           V++D L K+ +  EA RLL  +      P+   +  LM                GF + G
Sbjct: 510 VLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEALMHCCRTAEFKSVVALLKGFSMKG 569

Query: 373 RVNHAKELFVSM 384
            +N A +++ SM
Sbjct: 570 LMNQADKVYQSM 581



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/326 (28%), Positives = 159/326 (48%), Gaps = 45/326 (13%)

Query: 110 FNLLFGCLAKTKH--------------------------YDTVL------------SLFK 131
           F+ L    A                              Y+ VL             L  
Sbjct: 84  FDALIKSYASLSRGGGGASLAAAALAFARSAGYAPSLLAYNAVLLALSDASLPSARRLLA 143

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAE 190
            +   G+ P++YTYNIL+   C  G+      V+G  +R     P+ V + +L+   C  
Sbjct: 144 SMLRDGVAPNVYTYNILVRALCARGQREEALGVVGDDMRGAGCAPNVVTYNTLVAAFCRA 203

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
             +  A  L   ++  G +P+++T++T++NGLC+ G    A  +F+EMA    + G+   
Sbjct: 204 GEVDAAERLVGVMREGGVRPSLVTFNTVVNGLCKAGRMEDARKMFDEMA----REGLT-- 257

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+ V+Y T++ G CK G + +A  +F +M  K + PDVVT+ SLIH  C A +   A  L
Sbjct: 258 PDGVSYNTLVSGYCKAGCLHEALAVFAEMAQKGVVPDVVTFTSLIHAMCRAGNLERAVAL 317

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           + +M ++G++ +  TF  ++D  C+NG +D+A   ++ M    + P+   ++ L++G+C 
Sbjct: 318 VGQMRERGLRMNEFTFTALIDGFCRNGFLDDALLAMKEMRECRIQPSVVCYNVLINGYCK 377

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            GR++ A+EL   ME+ G K  V +Y
Sbjct: 378 LGRMDEARELIHEMEAKGMKPDVVTY 403



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 148/279 (53%), Gaps = 21/279 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N+L     K    D    L   + + G+ PD+ TY+ +++ +CK+G     F +
Sbjct: 363 PSVVCYNVLINGYCKLGRMDEARELIHEMEAKGMKPDVVTYSTILSGYCKIGDTDSAFEL 422

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+    PDA+ ++SLI+GLC E R+ +A  LF K+   G +P+  TY+TLI+G C+
Sbjct: 423 NRKMLKKGVVPDAITYSSLIRGLCEERRLGDACELFEKMLQLGLQPDEFTYTTLIDGHCK 482

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L +EM     K GV+  P+ VTY+ +IDGL K     +A+ L  ++  ++ 
Sbjct: 483 EGNVQKALSLHDEMI----KKGVL--PDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDP 536

Query: 285 NPDVVTYNSLIH---------------GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            PD + Y +L+H               GF      N+A+ +   M+D+  + D   ++V+
Sbjct: 537 VPDNIKYEALMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVL 596

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +   C+ G + +A    + ++  G +PN+++  +L+ G 
Sbjct: 597 IHGHCRGGNIMKALSFHKQLLRCGFSPNSTSTISLVRGL 635



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 39/168 (23%), Positives = 69/168 (41%), Gaps = 16/168 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  + D M+  +   P + ++++L   L+K+        L  +L      PD   Y  
Sbjct: 487 QKALSLHDEMIK-KGVLPDVVTYSVLIDGLSKSARTKEAQRLLFKLYYEDPVPDNIKYEA 545

Query: 148 LINC---------------FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           L++C               F   G ++    V   +L   +  D   ++ LI G C    
Sbjct: 546 LMHCCRTAEFKSVVALLKGFSMKGLMNQADKVYQSMLDRHWKLDGSVYSVLIHGHCRGGN 605

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           IM+A +   +L   G  PN  +  +L+ GL   G T+ A N+ +E+ N
Sbjct: 606 IMKALSFHKQLLRCGFSPNSTSTISLVRGLFEEGMTVEADNVIQELLN 653


>gi|297837133|ref|XP_002886448.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297332289|gb|EFH62707.1| hypothetical protein ARALYDRAFT_475066 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 332

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/213 (43%), Positives = 132/213 (61%), Gaps = 6/213 (2%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D VAF +L+ GLC E R++EA AL  ++   G +PN +TY T++NG+C+ G T  ALNL 
Sbjct: 9   DVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLL 68

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            +M   +       K + V YT IID LCK+G   KA+ LF +M DK I P+V+TYN +I
Sbjct: 69  RKMDESH------IKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMI 122

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            G C    W +A  LL +M++  V PDVVTFN +++   K GK+ EA  L   M+ R + 
Sbjct: 123 DGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIF 182

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           P+T T+++L+DGFC   R++ AK +F  M S G
Sbjct: 183 PDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKG 215



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + +FN L   L +        +L  R+   G  P+  TY  ++N  CKMG       +L 
Sbjct: 10  VVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSALNLLR 69

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++  S    D V +T++I  LC +    +A  LFT++   G  PNV+TY+ +I+G C  G
Sbjct: 70  KMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYG 129

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L  +M   N        P+ VT+  +I+   KEG + +A+EL+ +M  +NI P
Sbjct: 130 KWTDAEQLLRDMIESN------VDPDVVTFNALINAFVKEGKISEAEELYREMLGRNIFP 183

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D +TYNSLI GFC  +  ++A  +   M+ +G  P+V+T N ++   C+  ++D+  +LL
Sbjct: 184 DTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDDGIKLL 243

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             M+ RG+ P++ +++TL+ GFC  G +N A++LF  M S
Sbjct: 244 HEMLRRGLVPDSVSYNTLIHGFCQAGDLNAAQDLFQEMIS 283



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 140/260 (53%), Gaps = 6/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G   D+  +N L+N  C+ GRV     ++ R++ +   P+ V + +++ G+C       A
Sbjct: 5   GCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGDTDSA 64

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  K+     K +V+ Y+ +I+ LC+ GH   A NLF EM +  G F     PN +TY
Sbjct: 65  LNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHD-KGIF-----PNVLTY 118

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +IDG C  G    A++L   M + N++PDVVT+N+LI+ F      +EA  L  EM+ 
Sbjct: 119 NCMIDGCCSYGKWTDAEQLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEELYREMLG 178

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + PD +T+N ++D  CK+ ++D+A  + +LM+ +G +PN  T +TL+ G C   RV+ 
Sbjct: 179 RNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCCRAKRVDD 238

Query: 377 AKELFVSMESMGCKHTVFSY 396
             +L   M   G      SY
Sbjct: 239 GIKLLHEMLRRGLVPDSVSY 258



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 6/201 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K  H+    +LF  ++  G+FP++ TYN +I+  C  G+ +    +L  ++ S   PD
Sbjct: 90  LCKDGHHSKAQNLFTEMHDKGIFPNVLTYNCMIDGCCSYGKWTDAEQLLRDMIESNVDPD 149

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V F +LI     E +I EA  L+ ++      P+ ITY++LI+G C+      A ++F+
Sbjct: 150 VVTFNALINAFVKEGKISEAEELYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFD 209

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            M +  G       PN +T  T+I G C+   VD   +L  +M  + + PD V+YN+LIH
Sbjct: 210 LMVSKGGS------PNVITINTLIGGCCRAKRVDDGIKLLHEMLRRGLVPDSVSYNTLIH 263

Query: 297 GFCYANDWNEANCLLIEMMDQ 317
           GFC A D N A  L  EM+ Q
Sbjct: 264 GFCQAGDLNAAQDLFQEMISQ 284



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/176 (34%), Positives = 94/176 (53%), Gaps = 7/176 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  LT   ++ GC +  K  D    L + +  + + PD+ T+N LIN F K G++S    
Sbjct: 113 PNVLTYNCMIDGCCSYGKWTDAE-QLLRDMIESNVDPDVVTFNALINAFVKEGKISEAEE 171

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L     PD + + SLI G C  SR+ +A  +F  + + G  PNVIT +TLI G C
Sbjct: 172 LYREMLGRNIFPDTITYNSLIDGFCKHSRLDDAKHIFDLMVSKGGSPNVITINTLIGGCC 231

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           R       + L  EM     + G+V  P++V+Y T+I G C+ G ++ A++LF +M
Sbjct: 232 RAKRVDDGIKLLHEML----RRGLV--PDSVSYNTLIHGFCQAGDLNAAQDLFQEM 281



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/118 (31%), Positives = 59/118 (50%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M +K    DVV +N+L++G C      EA  L+  M++ G QP+ VT+  I++ +CK G 
Sbjct: 1   MVEKGCQHDVVAFNTLMNGLCREGRVLEAEALVDRMVENGHQPNEVTYGTIVNGMCKMGD 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            D A  LL  M    +  +   ++ ++D  C  G  + A+ LF  M   G    V +Y
Sbjct: 61  TDSALNLLRKMDESHIKADVVIYTAIIDRLCKDGHHSKAQNLFTEMHDKGIFPNVLTY 118



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 1/69 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IFD M++   SP  +T   L+ GC  + K  D  + L   +   GL PD  +YN 
Sbjct: 202 DDAKHIFDLMVSKGGSPNVITINTLIGGC-CRAKRVDDGIKLLHEMLRRGLVPDSVSYNT 260

Query: 148 LINCFCKMG 156
           LI+ FC+ G
Sbjct: 261 LIHGFCQAG 269


>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
           Japonica Group]
 gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
           Japonica Group]
 gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
          Length = 648

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I+  M + R   P L SF+ L G  A+    D  ++  + +   GL PD   Y +
Sbjct: 278 EEALKIYKEMRH-RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 336

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  FC+ G +S    V   ++     PD V + +L+ GLC E R+++A  L  +++  G
Sbjct: 337 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 396

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ T++TLI+G C  G    AL LF+ M N         +P+ VTY T+IDG+C++G
Sbjct: 397 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR------LRPDIVTYNTLIDGMCRQG 450

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA +L+  M  + I P+ VTY+ LI   C      +A   L EM+++G+ P+++T+N
Sbjct: 451 DLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 510

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+   C++G + +  + L+ M++  V+P+  T++TL+ G+    +++ A +L   ME  
Sbjct: 511 SIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE 570

Query: 388 GCKHTVFSY 396
             +  V +Y
Sbjct: 571 KVQPDVVTY 579



 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 164/282 (58%), Gaps = 10/282 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SF +L G   +    +  L ++K +   G+ PDL +++ LI  F + G++ H    
Sbjct: 259 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 318

Query: 165 LGRILRSCF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           L R +R CF   PD V +T +I G C    + +A  +  ++   GC P+V+TY+TL+NGL
Sbjct: 319 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 376

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+    + A  L  EM     + GV   P+  T+TT+I G C EG +DKA +LF  M ++
Sbjct: 377 CKERRLLDAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 430

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD+VTYN+LI G C   D ++AN L  +M  + + P+ VT+++++D  C+ G++++A
Sbjct: 431 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 490

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              L+ MI +G+ PN  T+++++ G+C +G V+  ++    M
Sbjct: 491 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 532



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M++ +   P + ++N +   L ++  +D    +FK ++  G+ PD+ ++ ILI
Sbjct: 210 AMALVDSMVS-KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 268

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             FC++G +     +   +      PD V+F+ LI       ++  A A   +++ FG  
Sbjct: 269 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 328

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ + Y+ +I G CR G    AL + +EM       G  C P+ VTY T+++GLCKE  +
Sbjct: 329 PDGVIYTMVIGGFCRAGLMSDALRVRDEMV------GCGCLPDVVTYNTLLNGLCKERRL 382

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A+ L  +M+++ + PD+ T+ +LIHG+C     ++A  L   M++Q ++PD+VT+N +
Sbjct: 383 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 442

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D +C+ G +D+A+ L + M  R + PN  T+S L+D  C  G+V  A      M + G 
Sbjct: 443 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 502

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 503 LPNIMTY 509



 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K +       L   +   G+ PDL T+  LI+ +C  G++     +
Sbjct: 364 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 423

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD V + +LI G+C +  + +A  L+  + +    PN +TYS LI+  C 
Sbjct: 424 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 483

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +EM N     G++  PN +TY +II G C+ G V K ++   +M    +
Sbjct: 484 KGQVEDAFGFLDEMINK----GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 537

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD++TYN+LIHG+   +  ++A  LL  M  + VQPDVVT+N++++    +G + EA  
Sbjct: 538 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 597

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + E M  +G+ P+  T+ ++++G    G    A +L   M   G
Sbjct: 598 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 641



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/313 (28%), Positives = 156/313 (49%), Gaps = 41/313 (13%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++     K   +D V ++   +    +FPD+ T+N++++   + G       ++  +
Sbjct: 158 TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 217

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P  V + S++KGLC      +A  +F ++  FG  P+V +++ LI G CR G  
Sbjct: 218 VSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEI 277

Query: 229 IVALNLFEEMANGNGK-------------------------------FGVVCKPNTVTYT 257
             AL +++EM +   K                               FG+V  P+ V YT
Sbjct: 278 EEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV--PDGVIYT 335

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNIN----PDVVTYNSLIHGFCYANDWNEANCLLIE 313
            +I G C+ G +  A    L+++D+ +     PDVVTYN+L++G C      +A  LL E
Sbjct: 336 MVIGGFCRAGLMSDA----LRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 391

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M ++GV PD+ TF  ++   C  GK+D+A +L + M+ + + P+  T++TL+DG C  G 
Sbjct: 392 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGD 451

Query: 374 VNHAKELFVSMES 386
           ++ A +L+  M S
Sbjct: 452 LDKANDLWDDMHS 464



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 168/345 (48%), Gaps = 42/345 (12%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P EAF  F  +L+ R  P P  + N L   L++          ++ + S+    + YT N
Sbjct: 102 PREAFEAFRLILDHR-VPIPAAASNALLAALSRAGWPHLAADAYRLVFSSNSEVNTYTLN 160

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I+++ +CK         V+  + + C  PD V    ++           A AL   + + 
Sbjct: 161 IMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSK 220

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KP ++TY++++ GLCR+G    A  +F+EM +    FGV   P+  ++T +I G C+ 
Sbjct: 221 GLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDD----FGVA--PDVRSFTILIGGFCRV 274

Query: 267 GFVDKAKELFLQMKDKNINPDVVT-----------------------------------Y 291
           G +++A +++ +M+ + I PD+V+                                   Y
Sbjct: 275 GEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIY 334

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
             +I GFC A   ++A  +  EM+  G  PDVVT+N +++ LCK  ++ +A  LL  M  
Sbjct: 335 TMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRE 394

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           RGV P+  TF+TL+ G+C+ G+++ A +LF +M +   +  + +Y
Sbjct: 395 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY 439



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 124/257 (48%), Gaps = 6/257 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP L +F  L          D  L LF  + +  L PD+ TYN LI+  C+ G +  
Sbjct: 395 RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK 454

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +      P+ V ++ LI   C + ++ +A     ++   G  PN++TY+++I 
Sbjct: 455 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 514

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR+G+        ++M            P+ +TY T+I G  KE  +  A +L   M+
Sbjct: 515 GYCRSGNVSKGQKFLQKMMVNK------VSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 568

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + + PDVVTYN LI+GF    +  EA  +  +M  +G++PD  T+  +++     G   
Sbjct: 569 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 628

Query: 341 EASRLLELMILRGVNPN 357
           EA +L + M+ RG  P+
Sbjct: 629 EAFQLHDEMLQRGFAPD 645



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD MLN R   P + ++N L   + +    D    L+  ++S  +FP+  TY+I
Sbjct: 418 DKALQLFDTMLNQRLR-PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 476

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G+V   F  L  ++     P+ + + S+IKG C    + +      K+    
Sbjct: 477 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 536

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI+G  +      A  L   M           +P+ VTY  +I+G    G
Sbjct: 537 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK------VQPDVVTYNMLINGFSVHG 590

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            V +A  +F +M  K I PD  TY S+I+G   A +  EA  L  EM+ +G  PD
Sbjct: 591 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 645



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++  +L S  TP    F  LI+      +  EA   F  +            + L+  L 
Sbjct: 73  IVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALS 132

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G   +A + +  + + N +       NT T   ++   CK    DK   +  +M+ + 
Sbjct: 133 RAGWPHLAADAYRLVFSSNSEV------NTYTLNIMVHNYCKALEFDKVDAVISEMEKRC 186

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVT+N ++     A D   A  L+  M+ +G++P +VT+N ++  LC++G  D+A 
Sbjct: 187 VFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAW 246

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + + M   GV P+  +F+ L+ GFC  G +  A +++  M   G K  + S+
Sbjct: 247 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSF 299


>gi|297605196|ref|NP_001056837.2| Os06g0152500 [Oryza sativa Japonica Group]
 gi|255676726|dbj|BAF18751.2| Os06g0152500 [Oryza sativa Japonica Group]
          Length = 717

 Score =  185 bits (469), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 160/294 (54%), Gaps = 6/294 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P L +FN +   L K    +    +F  +   GL PD+ +YN L++ +CK+G +    
Sbjct: 219 AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 278

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   + +    PD V FTSLI   C    + +A AL  +++  G + N +T++ LI+G 
Sbjct: 279 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 338

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    AL   EEM     K G+  +P+ V Y  +I+G CK G +D A+EL  +M+ K
Sbjct: 339 CKKGFLDDALLAVEEMR----KCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAK 392

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PDVVTY+++I G+C   + + A  L  +M+ +GV PD +T++ ++  LC+  ++++A
Sbjct: 393 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 452

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L E M+  GV P+  T++TL+DG C  G V  A  L   M   G    V +Y
Sbjct: 453 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTY 506



 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 159/293 (54%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFV 163
           P   ++N L     +    D    +   +   G   P+L T+N ++N  CK GR+     
Sbjct: 185 PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 244

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V   ++R    PD V++ +L+ G C    + E+ A+F+++   G  P+V+T+++LI+  C
Sbjct: 245 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 304

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+   A+ L  +M     +       N VT+T +IDG CK+GF+D A     +M+   
Sbjct: 305 KAGNLEQAVALVAQMRERGLRM------NEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 358

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P VV YN+LI+G+C     + A  L+ EM  + V+PDVVT++ I+   CK G +D A 
Sbjct: 359 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 418

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L + M+ +GV P+  T+S+L+ G C   R+N A ELF +M  +G +   F+Y
Sbjct: 419 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 471



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 80/235 (34%), Positives = 129/235 (54%), Gaps = 11/235 (4%)

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +LR    P+   +  L++ LCA  R+ EA  +   ++  GC PN +TY+TL+   CR
Sbjct: 140 LSSMLRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCR 199

Query: 225 TGHTIVA---LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            G    A   ++L  E  N         KPN VT+ ++++GLCK G ++ A+++F +M  
Sbjct: 200 AGELDGAERVVSLMREEGNA--------KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVR 251

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + + PDVV+YN+L+ G+C     +E+  +  EM  +G+ PDVVTF  ++   CK G +++
Sbjct: 252 EGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQ 311

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L+  M  RG+  N  TF+ L+DGFC  G ++ A      M   G + +V  Y
Sbjct: 312 AVALVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 366



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E+  +F  M   R   P + +F  L     K  + +  ++L  ++   GL  +  T+  
Sbjct: 275 HESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 333

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK G +    + +  + +    P  V + +LI G C   R+  A  L  +++A  
Sbjct: 334 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 393

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V+TYST+I+G C+ G+   A  L ++M     K GV+  P+ +TY+++I GLC+E 
Sbjct: 394 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKML----KKGVL--PDAITYSSLIRGLCEEK 447

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A ELF  M    + PD  TY +LI G C   +  +A  L  EM+ +GV PDVVT++
Sbjct: 448 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 507

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM---------------DGFCLTG 372
           V+++ L K+ +  EA RLL  +      P+   +  LM                GFC+ G
Sbjct: 508 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 567

Query: 373 RVNHAKELFVSM 384
            +  A +++ SM
Sbjct: 568 LMKEADKVYQSM 579



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 149/288 (51%), Gaps = 21/288 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L     K    D    L + + +  + PD+ TY+ +I+ +CK+G +   F +
Sbjct: 361 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 420

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+    PDA+ ++SLI+GLC E R+ +A  LF  +   G +P+  TY+TLI+G C+
Sbjct: 421 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 480

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L +EM     + GV+  P+ VTY+ +I+GL K     +A  L  ++  ++ 
Sbjct: 481 EGNVEKALSLHDEMI----RKGVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 534

Query: 285 NPDVVTYNSL---------------IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            PD + Y++L               + GFC      EA+ +   M+D+  + D   ++++
Sbjct: 535 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 594

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +   C+ G + +A    + M+  G +PN+++  +L+ G    G V  A
Sbjct: 595 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 642



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 16/166 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  + D M+  +   P + ++++L   L+K+        L  +L      PD   Y+ 
Sbjct: 485 EKALSLHDEMIR-KGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDA 543

Query: 148 LINC---------------FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           L+ C               FC  G +     V   +L   +  D   ++ LI G C    
Sbjct: 544 LMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSILIHGHCRGGN 603

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           + +A +   ++   G  PN  +  +L+ GL   G  + A N  +++
Sbjct: 604 VRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQDL 649


>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
          Length = 668

 Score =  184 bits (468), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++ +L   + K   ++  +++   + + G  P++ TYN++
Sbjct: 160 DALSLLDDMLR-RGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVI 218

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+ GRV     +L R+      PD V++T+L+KGLCA  R  +   LF ++    C
Sbjct: 219 INGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 278

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  LI   CR G    A+ + ++M          C  NT     +I+ +CK+G 
Sbjct: 279 MPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHE------CATNTTLCNIVINSICKQGR 332

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A +    M     NPD ++Y +++ G C A  WN+A  LL EM+     P+ VTFN 
Sbjct: 333 VDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNCPPNEVTFNT 392

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +++A  L+E M   G      T++ L++GFC+ G ++ A ELF    SM 
Sbjct: 393 FICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSALELF---RSMP 449

Query: 389 CKHTVFSY 396
           CK    +Y
Sbjct: 450 CKPNTITY 457



 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/287 (33%), Positives = 152/287 (52%), Gaps = 9/287 (3%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           SP  + ++N L     +  H D    L   + S  + PD YTY  LI   C  GRV+   
Sbjct: 106 SPVDVFAYNTLVAGYCRYGHLDAARRL---IGSMPVAPDAYTYTPLIRVLCDRGRVADAL 162

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +L  +LR    P+ V +T L++ +C  S   +A A+  +++A GC PN++TY+ +ING+
Sbjct: 163 SLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGM 222

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A +L       N  F   C+P+TV+YTT++ GLC     D  +ELF +M +K
Sbjct: 223 CREGRVDDARDLL------NRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEK 276

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N  P+ VT++ LI  FC       A  +L +M +     +    N++++ +CK G++D+A
Sbjct: 277 NCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDA 336

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            + L  M   G NP+T +++T++ G C   R N AKEL   M    C
Sbjct: 337 FKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRNNC 383



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 148/286 (51%), Gaps = 9/286 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++   + K    D        + S G  PD  +Y  ++   C+  R +    +L  ++R
Sbjct: 321 NIVINSICKQGRVDDAFKFLNNMGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVR 380

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
           +   P+ V F + I  LC +  I +A  L  +++  GC   V+TY+ L+NG C  GH   
Sbjct: 381 NNCPPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDS 440

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF  M          CKPNT+TYTT++ GLC    +D A EL  +M  ++  P+VVT
Sbjct: 441 ALELFRSMP---------CKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVT 491

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N L++ FC     +EA  L+ +MM+ G  P+++T+N + D + K+   ++A  LL  ++
Sbjct: 492 FNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLV 551

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +GV+P+  TFS+++       RV  A ++F   + +G +     Y
Sbjct: 552 SKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVY 597



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 144/269 (53%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +    +G   D++ YN L+  +C+ G +     ++G +      PDA  +T LI+ LC
Sbjct: 97  VLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAARRLIGSMP---VAPDAYTYTPLIRVLC 153

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ +A +L   +   GC+PNV+TY+ L+  +C+      A+ + +EM A G      
Sbjct: 154 DRGRVADALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMAVLDEMRAKG------ 207

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+EG VD A++L  ++      PD V+Y +L+ G C +  W++ 
Sbjct: 208 -CTPNIVTYNVIINGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDV 266

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EMM++   P+ VTF++++   C+ G ++ A ++L+ M       NT+  + +++ 
Sbjct: 267 EELFAEMMEKNCMPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINS 326

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A +   +M S GC     SY
Sbjct: 327 ICKQGRVDDAFKFLNNMGSYGCNPDTISY 355



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 142/293 (48%), Gaps = 15/293 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +  + L +++   G    + TYN L+N FC  G +     
Sbjct: 384 PPNEVTFNTFICILCQKGLIEQAIMLIEQMQEHGCTVGVVTYNALVNGFCVQGHIDSAL- 442

Query: 164 VLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
               + RS    P+ + +T+L+ GLC   R+  AA L  ++    C PNV+T++ L+N  
Sbjct: 443 ---ELFRSMPCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFF 499

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A+ L E+M          C PN +TY T+ DG+ K+   + A EL   +  K
Sbjct: 500 CQKGFLDEAIELVEQMMEHG------CTPNLITYNTLFDGITKDCSSEDALELLHGLVSK 553

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            ++PDV+T++S+I      +   EA  +     D G++P  + +N I+  LCK  ++D A
Sbjct: 554 GVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGLCKRHEIDNA 613

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
              L  M+  G  PN ST+  L++G    G +  A++L     SM C   V S
Sbjct: 614 IDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEAQDLL----SMLCSRGVVS 662



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/220 (33%), Positives = 109/220 (49%), Gaps = 9/220 (4%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R    PD    T LI+ LC   R  +AA +    +  G   +V  Y+TL+ G CR GH  
Sbjct: 68  RDGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLD 127

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L   M            P+  TYT +I  LC  G V  A  L   M  +   P+VV
Sbjct: 128 AARRLIGSMP---------VAPDAYTYTPLIRVLCDRGRVADALSLLDDMLRRGCQPNVV 178

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY  L+   C  + + +A  +L EM  +G  P++VT+NVI++ +C+ G++D+A  LL  +
Sbjct: 179 TYTVLLEAMCKNSGFEQAMAVLDEMRAKGCTPNIVTYNVIINGMCREGRVDDARDLLNRL 238

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
              G  P+T +++TL+ G C + R +  +ELF  M    C
Sbjct: 239 FSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEMMEKNC 278



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 6/176 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP + +FN+L     +    D  + L +++   G  P+L TYN L +   K      
Sbjct: 483 RDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTLFDGITKDCSSED 542

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++    +PD + F+S+I  L  E R+ EA  +F   +  G +P  + Y+ ++ 
Sbjct: 543 ALELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILL 602

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           GLC+      A++    M + NG     C PN  TY  +I+GL +EG + +A++L 
Sbjct: 603 GLCKRHEIDNAIDFLAYMVS-NG-----CMPNESTYIILIEGLAREGLLKEAQDLL 652



 Score = 82.0 bits (201), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 95/218 (43%), Gaps = 6/218 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++  L   L   +  D    L   +      P++ T+N+L+N FC+ G +   
Sbjct: 449 PCKPNTITYTTLLTGLCNAERLDAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEA 508

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             ++ +++    TP+ + + +L  G+  +    +A  L   L + G  P+VIT+S++I  
Sbjct: 509 IELVEQMMEHGCTPNLITYNTLFDGITKDCSSEDALELLHGLVSKGVSPDVITFSSIIGI 568

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L +      A+ +F  +A   G      +P  + Y  I+ GLCK   +D A +    M  
Sbjct: 569 LSKEDRVEEAIQMF-HLAQDIGM-----RPKALVYNKILLGLCKRHEIDNAIDFLAYMVS 622

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
               P+  TY  LI G        EA  LL  +  +GV
Sbjct: 623 NGCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRGV 660


>gi|296086456|emb|CBI32045.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 9/289 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           ++P+P    ++N +   L KT        + + + S G+ PD   Y  LI+ FCK+G VS
Sbjct: 219 LKPNP---YTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVS 275

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
             + +   + +   +PD + +T++I GLC   R+MEA  LF ++     +P+ +TY+ LI
Sbjct: 276 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +G C+ G    A +L  +M     + G+   PN VTYT + DGLCK G VD A EL  +M
Sbjct: 336 DGYCKEGKMKEAFSLHNQML----QMGLT--PNIVTYTALADGLCKCGEVDTANELLHEM 389

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             K +  ++ TYNSL++G C A + ++A  L+ +M   G  PD VT+  +MD  CK+ +M
Sbjct: 390 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 449

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             A  LL  M+ R + P   TF+ LM+GFC++G +   ++L   M   G
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 498



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/276 (36%), Positives = 155/276 (56%), Gaps = 12/276 (4%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           + VL L + +   GL P+ YTYN +I   CK G+V+    VL  ++     PD V +T+L
Sbjct: 205 EWVLKLIEEMQIKGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTL 264

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I G C    +  A  LF +++     P+ ITY+ +I GLC+TG  + A  LF EM     
Sbjct: 265 IDGFCKLGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEM----- 319

Query: 244 KFGVVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
               VCK   P+ VTYT +IDG CKEG + +A  L  QM    + P++VTY +L  G C 
Sbjct: 320 ----VCKRLEPDEVTYTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCK 375

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             + + AN LL EM  +G++ ++ T+N +++ LCK G +D+A +L++ M + G +P+  T
Sbjct: 376 CGEVDTANELLHEMCRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVT 435

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++TLMD +C +  +  A EL   M     + TV ++
Sbjct: 436 YTTLMDAYCKSREMVRAHELLRQMLDRELQPTVVTF 471



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ +FD M   + SP  +T   ++ G L +T        LF  +    L PD  TY  LI
Sbjct: 277 AYRLFDEMQKRKISPDFITYTAVICG-LCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 335

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G++   F +  ++L+   TP+ V +T+L  GLC    +  A  L  ++   G +
Sbjct: 336 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 395

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            N+ TY++L+NGLC+ G+   A+ L ++M            P+ VTYTT++D  CK   +
Sbjct: 396 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG------FHPDAVTYTTLMDAYCKSREM 449

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A EL  QM D+ + P VVT+N L++GFC +    +   LL  M+++G+ P+  T+N +
Sbjct: 450 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 509

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           + + C    M   + +   M  +GV P+ +T++ L+ G C    +  A  L   M   G 
Sbjct: 510 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF 569

Query: 390 KHTVFSY 396
             TV SY
Sbjct: 570 NLTVSSY 576



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + ML M  +P  +T +  L   L K    DT   L   +   GL  ++YTYN L
Sbjct: 346 EAFSLHNQMLQMGLTPNIVT-YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 404

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  CK G +     ++  +  + F PDAV +T+L+   C    ++ A  L  ++     
Sbjct: 405 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 464

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P V+T++ L+NG C +G       L + M       G++  PN  TY ++I   C    
Sbjct: 465 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK----GIM--PNATTYNSLIKQYCIRNN 518

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  K + PD  TYN LI G C A +  EA  L  +M+ +G    V ++N 
Sbjct: 519 MRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNA 578

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    K  K  EA  L E M   G+  +   ++   D
Sbjct: 579 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 616


>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
 gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 158/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +FN+L   L K         +F  +  TGL P   ++N LIN +CK G +  GF 
Sbjct: 229 PPNVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSFNTLINGYCKSGNLEEGFR 288

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      PD   +++LI GLC E ++ +A  LF ++   G  PN +T++TLING C
Sbjct: 289 LKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQC 348

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +AL ++++M      F    K + V Y T+IDGLCK G+  +A++   +M  + 
Sbjct: 349 KNGRVDLALEIYQQM------FTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRG 402

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +L+ G C   D   A  +  EM+ +G+Q D V F  I+  LC++GK+ +A 
Sbjct: 403 LIPDKFTYTTLLDGSCKEGDLELALEMRKEMVKEGIQLDNVAFTAIISGLCRDGKIVDAE 462

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+  T++ +MDGFC  G V    +L   M+S G    V +Y
Sbjct: 463 RTLREMLRAGLKPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITY 515



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 136/270 (50%), Gaps = 6/270 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L   L K    +    LFK +   GL P+  T+  LIN  CK GRV     +
Sbjct: 300 PDVFTYSALIDGLCKECQLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEI 359

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++       D V + +LI GLC      EA     ++   G  P+  TY+TL++G C+
Sbjct: 360 YQQMFTKGLKADLVLYNTLIDGLCKGGYFREARKFVGEMTKRGLIPDKFTYTTLLDGSCK 419

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL + +EM     K G+  + + V +T II GLC++G +  A+    +M    +
Sbjct: 420 EGDLELALEMRKEMV----KEGI--QLDNVAFTAIISGLCRDGKIVDAERTLREMLRAGL 473

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  ++ GFC   D      LL EM   G  P V+T+NV+M+ LCK G++  A  
Sbjct: 474 KPDDGTYTMVMDGFCKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMNGLCKQGQVKNADM 533

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           LL  M+  GV P+  T++ L+ G C  G++
Sbjct: 534 LLNAMLNLGVVPDDITYNILLQGHCKHGKL 563



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/179 (31%), Positives = 102/179 (56%), Gaps = 6/179 (3%)

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L+  + +    +VAL  + E+ +          PN  T+  +++ LCKEG V  A+ +F 
Sbjct: 203 LLERMIKMSSPMVALEFYLEILDSG------YPPNVYTFNVLMNRLCKEGKVKDAQLIFD 256

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +++   + P  V++N+LI+G+C + +  E   L + M +  V PDV T++ ++D LCK  
Sbjct: 257 EIRKTGLQPTAVSFNTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKEC 316

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++++A+ L + M  RG+ PN  TF+TL++G C  GRV+ A E++  M + G K  +  Y
Sbjct: 317 QLEDANHLFKEMCDRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLY 375


>gi|222634970|gb|EEE65102.1| hypothetical protein OsJ_20158 [Oryza sativa Japonica Group]
          Length = 552

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 160/294 (54%), Gaps = 6/294 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P L +FN +   L K    +    +F  +   GL PD+ +YN L++ +CK+G +    
Sbjct: 77  AKPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESL 136

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   + +    PD V FTSLI   C    + +A AL  +++  G + N +T++ LI+G 
Sbjct: 137 AVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTALIDGF 196

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    AL   EEM     K G+  +P+ V Y  +I+G CK G +D A+EL  +M+ K
Sbjct: 197 CKKGFLDDALLAVEEMR----KCGI--QPSVVCYNALINGYCKLGRMDLARELIREMEAK 250

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PDVVTY+++I G+C   + + A  L  +M+ +GV PD +T++ ++  LC+  ++++A
Sbjct: 251 RVKPDVVTYSTIISGYCKVGNLDSAFQLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDA 310

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L E M+  GV P+  T++TL+DG C  G V  A  L   M   G    V +Y
Sbjct: 311 CELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTY 364



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 159/293 (54%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFV 163
           P   ++N L     +    D    +   +   G   P+L T+N ++N  CK GR+     
Sbjct: 43  PNAVTYNTLVAAFCRAGELDGAERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARK 102

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V   ++R    PD V++ +L+ G C    + E+ A+F+++   G  P+V+T+++LI+  C
Sbjct: 103 VFDEMVREGLAPDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATC 162

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+   A+ L  +M     +       N VT+T +IDG CK+GF+D A     +M+   
Sbjct: 163 KAGNLEQAVALVAQMRERGLRM------NEVTFTALIDGFCKKGFLDDALLAVEEMRKCG 216

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P VV YN+LI+G+C     + A  L+ EM  + V+PDVVT++ I+   CK G +D A 
Sbjct: 217 IQPSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAF 276

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L + M+ +GV P+  T+S+L+ G C   R+N A ELF +M  +G +   F+Y
Sbjct: 277 QLNQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTY 329



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 152/261 (58%), Gaps = 7/261 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ P++YTYNIL+   C  GR+     V+G +  +   P+AV + +L+   C    +  A
Sbjct: 5   GVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGELDGA 64

Query: 197 AALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
             + + ++  G  KPN++T+++++NGLC+ G    A  +F+EM     + G+   P+ V+
Sbjct: 65  ERVVSLMREEGNAKPNLVTFNSMVNGLCKAGRMEGARKVFDEMV----REGLA--PDVVS 118

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T++ G CK G + ++  +F +M  + + PDVVT+ SLIH  C A +  +A  L+ +M 
Sbjct: 119 YNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMR 178

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           ++G++ + VTF  ++D  CK G +D+A   +E M   G+ P+   ++ L++G+C  GR++
Sbjct: 179 ERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMD 238

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A+EL   ME+   K  V +Y
Sbjct: 239 LARELIREMEAKRVKPDVVTY 259



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 78/232 (33%), Positives = 128/232 (55%), Gaps = 11/232 (4%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++R    P+   +  L++ LCA  R+ EA  +   ++  GC PN +TY+TL+   CR G 
Sbjct: 1   MVRHGVAPNVYTYNILVRALCARGRLEEAVGVVGDMRGAGCAPNAVTYNTLVAAFCRAGE 60

Query: 228 TIVA---LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              A   ++L  E  N         KPN VT+ ++++GLCK G ++ A+++F +M  + +
Sbjct: 61  LDGAERVVSLMREEGNA--------KPNLVTFNSMVNGLCKAGRMEGARKVFDEMVREGL 112

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV+YN+L+ G+C     +E+  +  EM  +G+ PDVVTF  ++   CK G +++A  
Sbjct: 113 APDVVSYNTLLSGYCKVGCLHESLAVFSEMTQRGLVPDVVTFTSLIHATCKAGNLEQAVA 172

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  M  RG+  N  TF+ L+DGFC  G ++ A      M   G + +V  Y
Sbjct: 173 LVAQMRERGLRMNEVTFTALIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCY 224



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 158/312 (50%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E+  +F  M   R   P + +F  L     K  + +  ++L  ++   GL  +  T+  
Sbjct: 133 HESLAVFSEM-TQRGLVPDVVTFTSLIHATCKAGNLEQAVALVAQMRERGLRMNEVTFTA 191

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK G +    + +  + +    P  V + +LI G C   R+  A  L  +++A  
Sbjct: 192 LIDGFCKKGFLDDALLAVEEMRKCGIQPSVVCYNALINGYCKLGRMDLARELIREMEAKR 251

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+V+TYST+I+G C+ G+   A  L ++M     K GV+  P+ +TY+++I GLC+E 
Sbjct: 252 VKPDVVTYSTIISGYCKVGNLDSAFQLNQKML----KKGVL--PDAITYSSLIRGLCEEK 305

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A ELF  M    + PD  TY +LI G C   +  +A  L  EM+ +GV PDVVT++
Sbjct: 306 RLNDACELFENMLQLGVQPDEFTYTTLIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYS 365

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM---------------DGFCLTG 372
           V+++ L K+ +  EA RLL  +      P+   +  LM                GFC+ G
Sbjct: 366 VLINGLSKSARTKEAHRLLFKLYHEDPVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKG 425

Query: 373 RVNHAKELFVSM 384
            +  A +++ SM
Sbjct: 426 LMKEADKVYQSM 437



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 149/288 (51%), Gaps = 21/288 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L     K    D    L + + +  + PD+ TY+ +I+ +CK+G +   F +
Sbjct: 219 PSVVCYNALINGYCKLGRMDLARELIREMEAKRVKPDVVTYSTIISGYCKVGNLDSAFQL 278

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+    PDA+ ++SLI+GLC E R+ +A  LF  +   G +P+  TY+TLI+G C+
Sbjct: 279 NQKMLKKGVLPDAITYSSLIRGLCEEKRLNDACELFENMLQLGVQPDEFTYTTLIDGHCK 338

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L +EM     + GV+  P+ VTY+ +I+GL K     +A  L  ++  ++ 
Sbjct: 339 EGNVEKALSLHDEMI----RKGVL--PDVVTYSVLINGLSKSARTKEAHRLLFKLYHEDP 392

Query: 285 NPDVVTYNSL---------------IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            PD + Y++L               + GFC      EA+ +   M+D+  + D   ++++
Sbjct: 393 VPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKLDGSVYSIL 452

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +   C+ G + +A    + M+  G +PN+++  +L+ G    G V  A
Sbjct: 453 IHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEA 500



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 73/287 (25%), Positives = 117/287 (40%), Gaps = 22/287 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +   ML     P  +T  +L+ G L + K  +    LF+ +   G+ PD +TY  
Sbjct: 273 DSAFQLNQKMLKKGVLPDAITYSSLIRG-LCEEKRLNDACELFENMLQLGVQPDEFTYTT 331

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V     +   ++R    PD V ++ LI GL   +R  EA  L  KL    
Sbjct: 332 LIDGHCKEGNVEKALSLHDEMIRKGVLPDVVTYSVLINGLSKSARTKEAHRLLFKLYHED 391

Query: 208 CKPNVITYSTL---------------INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
             P+ I Y  L               + G C  G    A  +++ M + N K       +
Sbjct: 392 PVPDNIKYDALMLCCSKAEFKSVVALLKGFCMKGLMKEADKVYQSMLDRNWKL------D 445

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y+ +I G C+ G V KA     QM     +P+  +  SL+ G        EA+  + 
Sbjct: 446 GSVYSILIHGHCRGGNVRKALSFHKQMLRSGFSPNSTSTISLVRGLFEEGMVVEADNAIQ 505

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
           +++      D      ++D   K G +D    +L  M   G+ P++ 
Sbjct: 506 DLLTCCPLADAEASKALIDLNRKEGNVDALIDVLCGMARDGLLPSSG 552


>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
 gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
          Length = 695

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 169/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I+  M + R   P L SF+ L G  A+    D  ++  + +   GL PD   Y +
Sbjct: 217 EEALKIYKEMRH-RGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGVIYTM 275

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  FC+ G +S    V   ++     PD V + +L+ GLC E R+++A  L  +++  G
Sbjct: 276 VIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNEMRERG 335

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ T++TLI+G C  G    AL LF+ M N         +P+ VTY T+IDG+C++G
Sbjct: 336 VPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR------LRPDIVTYNTLIDGMCRQG 389

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA +L+  M  + I P+ VTY+ LI   C      +A   L EM+++G+ P+++T+N
Sbjct: 390 DLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYN 449

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+   C++G + +  + L+ M++  V+P+  T++TL+ G+    +++ A +L   ME  
Sbjct: 450 SIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKE 509

Query: 388 GCKHTVFSY 396
             +  V +Y
Sbjct: 510 KVQPDVVTY 518



 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 164/282 (58%), Gaps = 10/282 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SF +L G   +    +  L ++K +   G+ PDL +++ LI  F + G++ H    
Sbjct: 198 PDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAY 257

Query: 165 LGRILRSCF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           L R +R CF   PD V +T +I G C    + +A  +  ++   GC P+V+TY+TL+NGL
Sbjct: 258 L-REMR-CFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGL 315

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+    + A  L  EM     + GV   P+  T+TT+I G C EG +DKA +LF  M ++
Sbjct: 316 CKERRLLDAEGLLNEMR----ERGV--PPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQ 369

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD+VTYN+LI G C   D ++AN L  +M  + + P+ VT+++++D  C+ G++++A
Sbjct: 370 RLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDA 429

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              L+ MI +G+ PN  T+++++ G+C +G V+  ++    M
Sbjct: 430 FGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKM 471



 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 166/307 (54%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M++ +   P + ++N +   L ++  +D    +FK ++  G+ PD+ ++ ILI
Sbjct: 149 AMALVDSMVS-KGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILI 207

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             FC++G +     +   +      PD V+F+ LI       ++  A A   +++ FG  
Sbjct: 208 GGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLV 267

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ + Y+ +I G CR G    AL + +EM       G  C P+ VTY T+++GLCKE  +
Sbjct: 268 PDGVIYTMVIGGFCRAGLMSDALRVRDEMV------GCGCLPDVVTYNTLLNGLCKERRL 321

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A+ L  +M+++ + PD+ T+ +LIHG+C     ++A  L   M++Q ++PD+VT+N +
Sbjct: 322 LDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTL 381

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D +C+ G +D+A+ L + M  R + PN  T+S L+D  C  G+V  A      M + G 
Sbjct: 382 IDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 441

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 442 LPNIMTY 448



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K +       L   +   G+ PDL T+  LI+ +C  G++     +
Sbjct: 303 PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 362

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD V + +LI G+C +  + +A  L+  + +    PN +TYS LI+  C 
Sbjct: 363 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 422

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +EM N     G++  PN +TY +II G C+ G V K ++   +M    +
Sbjct: 423 KGQVEDAFGFLDEMINK----GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 476

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD++TYN+LIHG+   +  ++A  LL  M  + VQPDVVT+N++++    +G + EA  
Sbjct: 477 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 536

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + E M  +G+ P+  T+ ++++G    G    A +L   M   G
Sbjct: 537 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 153/288 (53%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++     K   +D V ++   +    +FPD+ T+N++++   + G       ++  +
Sbjct: 97  TLNIMVHNYCKALEFDKVDAVISEMEKRCVFPDVVTHNVMVDARFRAGDAEAAMALVDSM 156

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P  V + S++KGLC      +A  +F ++  FG  P+V +++ LI G CR G  
Sbjct: 157 VSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFTILIGGFCRVGEI 216

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL +++EM +         KP+ V+++ +I    + G +D A     +M+   + PD 
Sbjct: 217 EEALKIYKEMRHRG------IKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDG 270

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  +I GFC A   ++A  +  EM+  G  PDVVT+N +++ LCK  ++ +A  LL  
Sbjct: 271 VIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGLLNE 330

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL+ G+C+ G+++ A +LF +M +   +  + +Y
Sbjct: 331 MRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTY 378



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 113/231 (48%), Gaps = 7/231 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD MLN R   P + ++N L   + +    D    L+  ++S  +FP+  TY+I
Sbjct: 357 DKALQLFDTMLNQRLR-PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 415

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G+V   F  L  ++     P+ + + S+IKG C    + +      K+    
Sbjct: 416 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 475

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI+G  +      A  L   M           +P+ VTY  +I+G    G
Sbjct: 476 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK------VQPDVVTYNMLINGFSVHG 529

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            V +A  +F +M  K I PD  TY S+I+G   A +  EA  L  EM+ +G
Sbjct: 530 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 580



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++  +L S  TP    F  LI+      +  EA   F  +            + L+  L 
Sbjct: 12  IVSSLLGSSPTPQPRVFDLLIRTYTQSRKPREAFEAFRLILDHRVPIPAAASNALLAALS 71

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G   +A + +  + + N +       NT T   ++   CK    DK   +  +M+ + 
Sbjct: 72  RAGWPHLAADAYRLVFSSNSEV------NTYTLNIMVHNYCKALEFDKVDAVISEMEKRC 125

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDVVT+N ++     A D   A  L+  M+ +G++P +VT+N ++  LC++G  D+A 
Sbjct: 126 VFPDVVTHNVMVDARFRAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAW 185

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + + M   GV P+  +F+ L+ GFC  G +  A +++  M   G K  + S+
Sbjct: 186 EVFKEMDDFGVAPDVRSFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSF 238


>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 718

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 162/293 (55%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN L     +  + +  L +   +   G  PD+YTYN LI+  CK+G       +
Sbjct: 261 PDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEI 320

Query: 165 LGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L + ILR C +P+ V + +LI  LC E+ I  A  L   L + G  P+V T++TLI GLC
Sbjct: 321 LQQMILREC-SPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLC 379

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            + +  +A+ +FEEM N        CKP+  TY+ +ID LC E  + +A  L  +M+   
Sbjct: 380 LSKNQDIAMEMFEEMKNKG------CKPDEFTYSILIDSLCYERRLKEALMLLKEMESSG 433

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              + V YN+LI G C +    +A  +  +M   GV    VT+N ++D LCKN +++EAS
Sbjct: 434 CARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCKNKRVEEAS 493

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L++ MI+ G+ P+  T+++L+  FC  G +  A ++  +M S GC+  +F+Y
Sbjct: 494 QLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTY 546



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + + M N    P  +T F  L     +    +  L + K++   G      +  +L+
Sbjct: 177 AILMLEEMANHGLKPDEIT-FTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLV 235

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N FCK GRV      +  +    F+PD V F SL+ G C    + +A  +   +   G  
Sbjct: 236 NGFCKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFD 295

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V TY++LI+G+C+ G    A+ + ++M          C PNTVTY T+I  LCKE  +
Sbjct: 296 PDVYTYNSLISGMCKLGEFEKAIEILQQMILRE------CSPNTVTYNTLISALCKENEI 349

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A +L   +  K + PDV T+N+LI G C + + + A  +  EM ++G +PD  T++++
Sbjct: 350 EAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSIL 409

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LC   ++ EA  LL+ M   G   N   ++TL+DG C + R+  A+E+F  ME +G 
Sbjct: 410 IDSLCYERRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGV 469

Query: 390 KHTVFSY 396
             +  +Y
Sbjct: 470 SRSSVTY 476



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N+    L +      V  L  ++ + G+  D+ T+N+LI   CK  ++    ++
Sbjct: 121 PDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRPAILM 180

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD + FT+L++G   E  +  A  +  ++  +GC    ++   L+NG C+
Sbjct: 181 LEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCK 240

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL    E++           P+ VT+ ++++G C+ G V+ A ++   M +K  
Sbjct: 241 EGRVEEALRFVLEVSEEG------FSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGF 294

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDV TYNSLI G C   ++ +A  +L +M+ +   P+ VT+N ++  LCK  +++ A+ 
Sbjct: 295 DPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISALCKENEIEAATD 354

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L  +++ +G+ P+  TF+TL+ G CL+   + A E+F  M++ GCK   F+Y
Sbjct: 355 LARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTY 406



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 147/296 (49%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  I   M+ +R   P   ++N L   L K    +    L + L S GL PD+ T+N L
Sbjct: 316 KAIEILQQMI-LRECSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTL 374

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C          +   +      PD   ++ LI  LC E R+ EA  L  ++++ GC
Sbjct: 375 IQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALMLLKEMESSGC 434

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N + Y+TLI+GLC++     A  +F++M       GV    ++VTY T+IDGLCK   
Sbjct: 435 ARNAVVYNTLIDGLCKSRRIEDAEEIFDQME----LLGV--SRSSVTYNTLIDGLCKNKR 488

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A +L  QM  + + PD  TYNSL+  FC   D  +A  ++  M   G +PD+ T+  
Sbjct: 489 VEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGCEPDIFTYGT 548

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++  LC+ G++D AS+LL  + ++G+      ++ ++    +  R      LF  M
Sbjct: 549 LIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMRLFREM 604



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 137/285 (48%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  +K+ D  + +F+ + + G  PD +TY+ILI+  C   R+    ++
Sbjct: 366 PDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYERRLKEALML 425

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S    +AV + +LI GLC   RI +A  +F +++  G   + +TY+TLI+GLC+
Sbjct: 426 LKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMELLGVSRSSVTYNTLIDGLCK 485

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L ++M           KP+  TY +++   C+ G ++KA ++   M     
Sbjct: 486 NKRVEEASQLMDQMIMEG------LKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMASNGC 539

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+ TY +LI G C A   + A+ LL  +  +G+      +N ++  L    +  E  R
Sbjct: 540 EPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMKGIVLTPHAYNPVIQALFMRKRTKEGMR 599

Query: 345 LLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHAKELFVSMESMG 388
           L   M+ +   P+  T   +  G C   G +  A +  V M   G
Sbjct: 600 LFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKG 644



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/295 (24%), Positives = 127/295 (43%), Gaps = 47/295 (15%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P PP  T    L   L ++  +D++ +L K+L S+G  P+  T+  LI  F     + + 
Sbjct: 54  PLPPNET----LLLQLTQSSSFDSITTLLKQLKSSGSIPNATTFATLIQSFTNFHEIEN- 108

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
              L +IL +                                   G KP+   Y+  +N 
Sbjct: 109 ---LLKILEN---------------------------------ELGFKPDTNFYNIALNA 132

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L       +   L  +M N     G+V   +  T+  +I  LCK   +  A  +  +M +
Sbjct: 133 LVEDNKLKLVEMLHSKMVNE----GIVL--DVSTFNVLIKALCKAHQLRPAILMLEEMAN 186

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD +T+ +L+ GF    D N A  +  +M+  G     V+  V+++  CK G+++E
Sbjct: 187 HGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEE 246

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A R +  +   G +P+  TF++L++GFC  G VN A ++   M   G    V++Y
Sbjct: 247 ALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDALDIVDFMIEKGFDPDVYTY 301


>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 583

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 165/322 (51%), Gaps = 32/322 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF---V 163
           L +FN+    L +    +      + + + G+ P++ TYN L++ +CK G     +    
Sbjct: 200 LNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVDGYCKRGSAGKMYKAEA 259

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +  +L +   P+ V F +LI G C +  +  A   F +++  G KPN++TY++LINGLC
Sbjct: 260 FMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLC 319

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV---------CK--------------------PNTV 254
             G    A++L+++M     K  +V         CK                    PN +
Sbjct: 320 NNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVI 379

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+ T+ID  CKEG +++   L   M D+ I P+V TYN LI G C   D   A  LL EM
Sbjct: 380 TFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEM 439

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            ++G++ DVVT+N+++D LCKN K   A +LL  M   G+ PN  T++TLMDG+C+ G++
Sbjct: 440 ENKGLKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKL 499

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  +   ME    +  V +Y
Sbjct: 500 KAALNVRTRMEKERKQPNVVTY 521



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN L     K ++       F+ +   GL P++ TYN LIN  C  G++     +
Sbjct: 271 PNEVTFNTLIDGFCKDENVAAAKKAFEEMQKQGLKPNIVTYNSLINGLCNNGKLEEAIDL 330

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ V + +LI G C +  + EA  +F  +      PNVIT++T+I+  C+
Sbjct: 331 WDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTMIDAYCK 390

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G      +L   M +     G++  PN  TY  +I GLC++  +  AKEL  +M++K +
Sbjct: 391 EGMMEEGFSLCSSMLDE----GIL--PNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL 444

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DVVTYN LI G C  +    A  LL EM + G++P+ VT+N +MD  C  GK+  A  
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAALN 504

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   M      PN  T++ L+ G+C   ++  A  L   M   G
Sbjct: 505 VRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKG 548



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/249 (32%), Positives = 133/249 (53%), Gaps = 7/249 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++D M+ +    P + ++N L     K K       +F  ++   L P++ T+N +
Sbjct: 326 EAIDLWDKMVGL-GLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTM 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK G +  GF +   +L     P+   +  LI GLC +  +  A  L  +++  G 
Sbjct: 385 IDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGL 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K +V+TY+ LI+GLC+   +  A  L  EM      F +  KPN VTY T++DG C EG 
Sbjct: 445 KGDVVTYNILIDGLCKNDKSRNAEKLLNEM------FNLGLKPNHVTYNTLMDGYCMEGK 498

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  +  +M+ +   P+VVTYN LI G+C  N    AN LL EM+++G+ P+  T+++
Sbjct: 499 LKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDI 558

Query: 329 IMDELCKNG 337
           +  E+ + G
Sbjct: 559 VRLEMLEKG 567



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 132/260 (50%), Gaps = 6/260 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L      +  + L+ ++   GL P++ TYN LIN FCK   +     V
Sbjct: 306 PNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKV 365

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ + F ++I   C E  + E  +L + +   G  PNV TY+ LI GLCR
Sbjct: 366 FDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYNCLIAGLCR 425

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L  EM N         K + VTY  +IDGLCK      A++L  +M +  +
Sbjct: 426 KQDLQAAKELLNEMENKG------LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGL 479

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+L+ G+C       A  +   M  +  QP+VVT+NV++   CK  K++ A+ 
Sbjct: 480 KPNHVTYNTLMDGYCMEGKLKAALNVRTRMEKERKQPNVVTYNVLIKGYCKINKLEAANG 539

Query: 345 LLELMILRGVNPNTSTFSTL 364
           LL  M+ +G+NPN +T+  +
Sbjct: 540 LLNEMLEKGLNPNRTTYDIV 559



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 151/334 (45%), Gaps = 45/334 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           RP    L   ++L     K          F R    G    L + N L++   K  ++  
Sbjct: 125 RPGATALI-IDMLVLAYVKNLELHCAYEAFTRAKDYGFKLSLTSCNPLLSALVKENKIGD 183

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +++     +   F   I GLC   ++ +A      +KA+G  PNV+TY+TL++
Sbjct: 184 VEYVYKEMIKRRIHTNLNTFNIFINGLCRAGKLNKAEDAIEDMKAWGISPNVVTYNTLVD 243

Query: 221 GLCRTG--------------------------------------HTIVALNLFEEMANGN 242
           G C+ G                                      +   A   FEEM    
Sbjct: 244 GYCKRGSAGKMYKAEAFMKEMLANKICPNEVTFNTLIDGFCKDENVAAAKKAFEEMQ--- 300

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            K G+  KPN VTY ++I+GLC  G +++A +L+ +M    + P++VTYN+LI+GFC   
Sbjct: 301 -KQGL--KPNIVTYNSLINGLCNNGKLEEAIDLWDKMVGLGLKPNIVTYNALINGFCKKK 357

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  +  ++  Q + P+V+TFN ++D  CK G M+E   L   M+  G+ PN ST++
Sbjct: 358 MMKEATKVFDDVSKQELVPNVITFNTMIDAYCKEGMMEEGFSLCSSMLDEGILPNVSTYN 417

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+ G C    +  AKEL   ME+ G K  V +Y
Sbjct: 418 CLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTY 451


>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Brachypodium distachyon]
          Length = 757

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 105/321 (32%), Positives = 163/321 (50%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F+     L +  H D  L +   +   G  PD+YTY+ +INC C  G +     +
Sbjct: 299 PDRVTFSTFVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGI 358

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + +++ S   PD   F +LI  LC E+++ EA  L  +L   G  PNV T++ LIN LC+
Sbjct: 359 VNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCK 418

Query: 225 TGHTIVALNLFEEMANG------------------NGKFGVV-----------CKPNTVT 255
            G   +A+ LFEEM +                   +GK               C  +TVT
Sbjct: 419 VGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVT 478

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y TIIDGLCK   +++A+E+F QM    I  + +T+N+LI G C A   ++A  L+ +M+
Sbjct: 479 YNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAELVDQMI 538

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+QP+ VT+N I+   CK G + +A+ +L+ M   G   +  T++TL++G C   R  
Sbjct: 539 SEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQ 598

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A +L   M   G K T  +Y
Sbjct: 599 AALKLLRGMRMKGMKPTPKAY 619



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 162/311 (52%), Gaps = 10/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +    L+M         +N L   LA+      + S +  ++S G+ PD+ T+N 
Sbjct: 142 DDAFDLVSNQLDMFGVQANTEVYNHLLTVLAEGSKIKLLESAYTEMSSQGIEPDVVTFNT 201

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +I+  C+  R +   V++   + SC   PD   FT+L++G   E  I  A  L  ++   
Sbjct: 202 VIDALCR-ARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRLKARMSEM 260

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLF-EEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           GC P  +T + LING C+ G    AL    +E+A+G        +P+ VT++T ++GLC+
Sbjct: 261 GCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADG-------FEPDRVTFSTFVNGLCQ 313

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G VD A ++   M  +   PDV TY+++I+  C   +  EA  ++ +M+D G  PD  T
Sbjct: 314 NGHVDHALKVLGLMLQEGCEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGCLPDTTT 373

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++  LC   +++EA  L   + ++G++PN  TF+ L++  C  G  + A  LF  M+
Sbjct: 374 FNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMK 433

Query: 386 SMGCKHTVFSY 396
           S GC     +Y
Sbjct: 434 SSGCTPDEVTY 444



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L + +   T + + + ++S  + PD  T+  L+  F + G +     +
Sbjct: 194 PDVVTFNTVIDALCRARQARTAVLMLEEMSSCDVAPDETTFTTLMEGFVEEGSIEAALRL 253

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+     +P +V    LI G C   R+ +A     +  A G +P+ +T+ST +NGLC+
Sbjct: 254 KARMSEMGCSPTSVTVNVLINGYCKLGRVGDALGYIQQEIADGFEPDRVTFSTFVNGLCQ 313

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            GH   AL +   M          C+P+  TY+T+I+ LC  G +++AK +  QM D   
Sbjct: 314 NGHVDHALKVLGLMLQEG------CEPDVYTYSTVINCLCNNGELEEAKGIVNQMVDSGC 367

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  T+N+LI   C  N   EA  L  E+  +G+ P+V TFN++++ LCK G    A R
Sbjct: 368 LPDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVR 427

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E M   G  P+  T++ L+D  C +G++  A +L   ME  GC  +  +Y
Sbjct: 428 LFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTY 479



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 92/293 (31%), Positives = 149/293 (50%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T+FN L   L      +  L L + L   GL P++YT+NILIN  CK+G       +
Sbjct: 369 PDTTTFNTLIVALCTENQLEEALDLARELTVKGLSPNVYTFNILINALCKVGDPHLAVRL 428

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S  TPD V +  LI  LC+  ++ +A  L  +++  GC  + +TY+T+I+GLC+
Sbjct: 429 FEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEMEVSGCPQSTVTYNTIIDGLCK 488

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                 A  +F++M   G G+       N +T+ T+IDGLC    +D A EL  QM  + 
Sbjct: 489 RRRIEEAEEVFDQMDVTGIGR-------NAITFNTLIDGLCNAERIDDAAELVDQMISEG 541

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+ VTYNS++  +C   + ++A  +L  M   G + DVVT+  +++ LCK  +   A 
Sbjct: 542 LQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLCKARRTQAAL 601

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LL  M ++G+ P    ++ ++           A  LF  M  +G     F+Y
Sbjct: 602 KLLRGMRMKGMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVGGPPDAFTY 654



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 138/292 (47%), Gaps = 7/292 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++   P + +FN+L   L K       + LF+ + S+G  PD  TYNILI+  C  G+
Sbjct: 397 LTVKGLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGK 456

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           ++    +L  +  S      V + ++I GLC   RI EA  +F ++   G   N IT++T
Sbjct: 457 LAKALDLLKEMEVSGCPQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNT 516

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC       A  L ++M +         +PN VTY +I+   CK+G + KA ++  
Sbjct: 517 LIDGLCNAERIDDAAELVDQMISEG------LQPNNVTYNSILTHYCKQGNISKAADILQ 570

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M       DVVTY +LI+G C A     A  LL  M  +G++P    +N ++  L +  
Sbjct: 571 TMTANGFEVDVVTYATLINGLCKARRTQAALKLLRGMRMKGMKPTPKAYNPVIQSLFRGN 630

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR-VNHAKELFVSMESMG 388
              +A  L   M   G  P+  T+  +  G C  G  +  A +  V M   G
Sbjct: 631 NGRDALSLFREMTEVGGPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNG 682



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 7/248 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K +  +    +F +++ TG+  +  T+N LI+  C   R+     
Sbjct: 473 PQSTVTYNTIIDGLCKRRRIEEAEEVFDQMDVTGIGRNAITFNTLIDGLCNAERIDDAAE 532

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ +++     P+ V + S++   C +  I +AA +   + A G + +V+TY+TLINGLC
Sbjct: 533 LVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATLINGLC 592

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +   T  AL L   M           KP    Y  +I  L +      A  LF +M +  
Sbjct: 593 KARRTQAALKLLRGMRMKG------MKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVG 646

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD  TY  +  G C       EA   L+EM D G  P+  +F ++ + L   G  D  
Sbjct: 647 GPPDAFTYKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLGMDDYL 706

Query: 343 SRLLELMI 350
            R +EL++
Sbjct: 707 IRAIELIV 714


>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
 gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
          Length = 561

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 160/315 (50%), Gaps = 12/315 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF IF+ M       P + ++  +   L K    D  + L   +N TG  P++ TY++
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   CK GR   GF +L  + R  F PD + + +L+ GLC   R+ EA  L   +   G
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P V+TY++L+   CR+     A  L + M+         C P+ + Y T+I GLC++ 
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG------CPPDVINYNTVIAGLCRDA 290

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFC----YANDWN-EANCLLIEMMDQ-GVQP 321
            +D A+ L  QM      PDV+TY+++I G C       DW  EA C ++EMM Q G  P
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPP 350

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +  T+ V+++ LC+  K  +A  LL  MI   V P+ S+FS ++   C +  ++ A ++F
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 382 VSMESMGCKHTVFSY 396
             M    CK    +Y
Sbjct: 411 GMMSERECKPNPVAY 425



 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 175/347 (50%), Gaps = 23/347 (6%)

Query: 65  SLEQFLKERC-------KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
           +++ F +ERC        S   G   A   ++A+ + D M + R  PP +   N +   L
Sbjct: 17  AVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD-RGIPPGVAVHNGVIRGL 75

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS--CFTP 175
            K   +   L  FK +  T   PD+ T+NIL++   K GRV   F +   +  S  C  P
Sbjct: 76  CKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCL-P 134

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           + V +T++I GLC + ++  A  L   +   GC PNVITYS L+ GLC+ G T     L 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           +EM           +P+ + Y T+++GLCK   +D+A EL   M      P VVTYNSL+
Sbjct: 195 QEMTRRG------FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
             FC +   + A  L+  M ++G  PDV+ +N ++  LC++ ++D+A  LL+ M+     
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV 308

Query: 356 PNTSTFSTLMDGFCLTGRVN------HAKELFVSMESMGCKHTVFSY 396
           P+  T+ST++DG C   RV+       A E+   M+  GC     +Y
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 151/287 (52%), Gaps = 8/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            N     L +   +   + LF+        P+ +TY  LI+  CK G++   + +L  + 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P       +I+GLC   R  +A   F  +    C P++IT++ L++ L ++G   
Sbjct: 58  DRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FE M   +      C PN VTYTT+I+GLCK+G +D+A EL   M +    P+V+
Sbjct: 118 EAFQIFESMHTSSQ-----CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY+ L+ G C A   ++   LL EM  +G QPDV+ +N +++ LCK+ ++DEA  L++LM
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           I  G  P   T+++LM+ FC + +V+ A  L   M   GC   V +Y
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINY 279



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 12/311 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G   A   ++ F +   M   R   P +  +N L   L K++  D  L L + +  +G 
Sbjct: 179 EGLCKAGRTDKGFTLLQEM-TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGC 237

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           +P + TYN L+  FC+  +V   F ++  +      PD + + ++I GLC ++R+ +A A
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL-----FEEMANGNGKFGVVCKPNT 253
           L  ++ A  C P+VITYST+I+GLC+         L       EM    G     C PN 
Sbjct: 298 LLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG-----CPPNA 352

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            TY  +I+GLC+     +A  L  +M D  + PD+ +++ +I   C ++D + A  +   
Sbjct: 353 GTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGM 412

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M ++  +P+ V +  ++D L K G++D+A R+ ELM+     P  +T+++++DG C  GR
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV-ESFRPGVATYNSVLDGLCGVGR 471

Query: 374 VNHAKELFVSM 384
           +  A  +   M
Sbjct: 472 IEEAVRMVEGM 482



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 36/308 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     ++K  D    L + ++  G  PD+  YN +I   C+  R+     +
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRI-----MEAA-ALFTKLKAFGCKPNVITYSTL 218
           L +++ +   PD + ++++I GLC + R+     +EAA  +   +K  GC PN  TY+ +
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 219 INGLCRTGHTIVALNLFEEMANGN-------------------------GKFGVV----C 249
           I GLCR   +  AL L   M +                             FG++    C
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KPN V Y  +IDGL K G VDKA  +F ++  ++  P V TYNS++ G C      EA  
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVR 477

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++  M+ +   PD  ++  ++  LC+   ++EA  L + +  +G       ++ L++  C
Sbjct: 478 MVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELC 537

Query: 370 LTGRVNHA 377
              R++ A
Sbjct: 538 KKKRLSDA 545



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 14/272 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL------FKRLNSTGLFPD 141
           ++A  +   M+  R  P  +T   ++ G L K    D    L       + +  TG  P+
Sbjct: 293 DDAQALLKQMVAARCVPDVITYSTIIDG-LCKDWRVDADWKLEAACEILEMMKQTGCPPN 351

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
             TY ++I   C+  +      +L R++ S   PD  +F+ +I  LC    +  A  +F 
Sbjct: 352 AGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFG 411

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            +    CKPN + Y+ LI+GL + G    A+ +FE M           +P   TY +++D
Sbjct: 412 MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF-------RPGVATYNSVLD 464

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC  G +++A  +   M  K   PD  +Y +LI G C  +   EA  L   +  +G   
Sbjct: 465 GLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAM 524

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +V  +NV+++ELCK  ++ +A  +   +I  G
Sbjct: 525 EVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|115458614|ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
 gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza sativa Japonica Group]
 gi|113564478|dbj|BAF14821.1| Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 164/304 (53%), Gaps = 8/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++   +F+  +  R   P + SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 232 HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 291

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  C+   VS G  VL R+ R     P+ V FTS+I G C   ++ +A A++  + A 
Sbjct: 292 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 351

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN +TY+ LING  + G    A+ ++++M        + C P+ VT++++IDG C+ 
Sbjct: 352 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 405

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A  ++  M    I P+V T++ +IH  C  N  +EA  LL E+ +   + P    
Sbjct: 406 GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFI 465

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK GK+DEA+ + + M  +G  P+  T++ L+ G+C+  R++ A   F  M 
Sbjct: 466 YNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMV 525

Query: 386 SMGC 389
             GC
Sbjct: 526 EAGC 529



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 158/291 (54%), Gaps = 9/291 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGR 167
           ++N L   L        V++LF+R     ++ PD++++N++I   C++G+V     ++ R
Sbjct: 217 AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 276

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTG 226
           +     +PD V    L+ GLC  + +     +  +L+  G C PNV+T++++I+G C+ G
Sbjct: 277 MNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 336

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ ++ +M       G++  PNTVTY  +I+G  K G +  A E++ QM      P
Sbjct: 337 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 390

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVT++SLI G+C     ++A  +  +M    +QP+V TF++I+  LCK  + DEA  LL
Sbjct: 391 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLL 450

Query: 347 ELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + LR  + P    ++ ++D  C  G+V+ A  +   ME  GC+   ++Y
Sbjct: 451 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTY 501



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 147/318 (46%), Gaps = 14/318 (4%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           S +Q +   C+S  Q D        A  +FD M       P     + L          D
Sbjct: 146 SCQQIIVVLCRSGRQAD--------ALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLD 197

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSL 183
              +L  + +  G   + Y YN L++     GRV     +  R ++   ++PD  +F  +
Sbjct: 198 ASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVV 257

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           IKG+C   ++ +A  L  ++  FGC P+ +T++ L++GLCRT        +   +     
Sbjct: 258 IKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG- 316

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
               VC PN VT+T++I G CK G ++ A  ++  M    I P+ VTYN LI+G+    D
Sbjct: 317 ----VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGD 372

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
              A  +  +M      PDVVTF+ ++D  C+ G++D+A R+   M    + PN  TFS 
Sbjct: 373 LGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSI 432

Query: 364 LMDGFCLTGRVNHAKELF 381
           ++   C   R + A  L 
Sbjct: 433 IIHSLCKQNRSDEAIGLL 450



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  +     K    +  ++++  + ++G+ P+  TYN+LIN + K+G +     V
Sbjct: 320 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 379

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ R    PD V F+SLI G C   ++ +A  +++ +     +PNV T+S +I+ LC+
Sbjct: 380 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 439

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A+ L  E+   N +  +   P    Y  +ID LCK G VD+A  +   M++K  
Sbjct: 440 QNRSDEAIGLLNEL---NLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 494

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  LI G+C  +  +EA     EM++ G  PD +T N  +  L K G  +E   
Sbjct: 495 RPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDH 554

Query: 345 LLEL 348
           ++ L
Sbjct: 555 VMRL 558



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 114/261 (43%), Gaps = 42/261 (16%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEA------------------------------------ 196
            TP A +   +I  LC   R  +A                                    
Sbjct: 140 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDAS 199

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           A L +K   FGC+     Y+ L++ L   G     + LFE           V  P+  ++
Sbjct: 200 ATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDR-----VYSPDVWSF 254

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I G+C+ G V KA EL  +M +   +PD VT+N L+ G C  N+ +  + +L  +  
Sbjct: 255 NVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQR 314

Query: 317 QGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            GV  P+VVTF  ++   CK GK+++A  +   M+  G+ PNT T++ L++G+   G + 
Sbjct: 315 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 374

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A E++  M  + C   V ++
Sbjct: 375 SAVEVYQQMTRLRCPPDVVTF 395



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/240 (26%), Positives = 103/240 (42%), Gaps = 44/240 (18%)

Query: 196 AAALFTKLKAFGCKPNVITYST-----LINGLCRTGHTIVALNLFEEMANGNG------- 243
           A A+FT L    C P  IT S      +I  LCR+G    AL LF++M    G       
Sbjct: 126 ALAVFTALH---CSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARF 182

Query: 244 -------------------------KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                                    +FG  C+     Y  ++  L   G V     LF +
Sbjct: 183 LSFLVSSCTCANLLDASATLLSKASEFG--CRVEAYAYNKLMSSLIGRGRVHDVVALFER 240

Query: 279 -MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++D+  +PDV ++N +I G C      +A  L+  M + G  PD VT N+++D LC+  
Sbjct: 241 WIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTN 300

Query: 338 KMDEASRLLELMILRGV-NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++     +L  +   GV  PN  TF++++ G+C  G++  A  ++  M + G      +Y
Sbjct: 301 EVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTY 360


>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
 gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
          Length = 561

 Score =  184 bits (468), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/315 (32%), Positives = 160/315 (50%), Gaps = 12/315 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF IF+ M       P + ++  +   L K    D  + L   +N TG  P++ TY++
Sbjct: 117 EEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSV 176

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   CK GR   GF +L  + R  F PD + + +L+ GLC   R+ EA  L   +   G
Sbjct: 177 LVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSG 236

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P V+TY++L+   CR+     A  L + M+         C P+ + Y T+I GLC++ 
Sbjct: 237 CYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERG------CPPDVINYNTVIAGLCRDA 290

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFC----YANDWN-EANCLLIEMMDQ-GVQP 321
            +D A+ L  QM      PDV+TY+++I G C       DW  EA C ++EMM Q G  P
Sbjct: 291 RLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPP 350

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +  T+ V+++ LC+  K  +A  LL  MI   V P+ S+FS ++   C +  ++ A ++F
Sbjct: 351 NAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIF 410

Query: 382 VSMESMGCKHTVFSY 396
             M    CK    +Y
Sbjct: 411 GMMSERECKPNPVAY 425



 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/347 (32%), Positives = 175/347 (50%), Gaps = 23/347 (6%)

Query: 65  SLEQFLKERC-------KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
           +++ F +ERC        S   G   A   ++A+ + D M + R  PP +   N +   L
Sbjct: 17  AVQLFREERCVPNEFTYGSLIHGLCKAGKLDQAYELLDEMRD-RGIPPGVAVHNGVIKGL 75

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS--CFTP 175
            K   +   L  FK +  T   PD+ T+NIL++   K GRV   F +   +  S  C  P
Sbjct: 76  CKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVEEAFQIFESMHTSSQCL-P 134

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           + V +T++I GLC + ++  A  L   +   GC PNVITYS L+ GLC+ G T     L 
Sbjct: 135 NVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLL 194

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           +EM           +P+ + Y T+++GLCK   +D+A EL   M      P VVTYNSL+
Sbjct: 195 QEMTRRG------FQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGCYPTVVTYNSLM 248

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
             FC +   + A  L+  M ++G  PDV+ +N ++  LC++ ++D+A  LL+ M+     
Sbjct: 249 ELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCV 308

Query: 356 PNTSTFSTLMDGFCLTGRVN------HAKELFVSMESMGCKHTVFSY 396
           P+  T+ST++DG C   RV+       A E+   M+  GC     +Y
Sbjct: 309 PDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTY 355



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 151/287 (52%), Gaps = 8/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            N     L +   +   + LF+        P+ +TY  LI+  CK G++   + +L  + 
Sbjct: 1   MNCALNLLVRAGQHGQAVQLFREERCV---PNEFTYGSLIHGLCKAGKLDQAYELLDEMR 57

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P       +IKGLC   R  +A   F  +    C P++IT++ L++ L ++G   
Sbjct: 58  DRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDALVKSGRVE 117

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FE M   +      C PN VTYTT+I+GLCK+G +D+A EL   M +    P+V+
Sbjct: 118 EAFQIFESMHTSSQ-----CLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPNVI 172

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY+ L+ G C A   ++   LL EM  +G QPDV+ +N +++ LCK+ ++DEA  L++LM
Sbjct: 173 TYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLM 232

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           I  G  P   T+++LM+ FC + +V+ A  L   M   GC   V +Y
Sbjct: 233 IRSGCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINY 279



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 159/311 (51%), Gaps = 12/311 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G   A   ++ F +   M   R   P +  +N L   L K++  D  L L + +  +G 
Sbjct: 179 EGLCKAGRTDKGFTLLQEM-TRRGFQPDVIMYNTLLNGLCKSRRLDEALELVQLMIRSGC 237

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           +P + TYN L+  FC+  +V   F ++  +      PD + + ++I GLC ++R+ +A A
Sbjct: 238 YPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQA 297

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL-----FEEMANGNGKFGVVCKPNT 253
           L  ++ A  C P+VITYST+I+GLC+         L       EM    G     C PN 
Sbjct: 298 LLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG-----CPPNA 352

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            TY  +I+GLC+     +A  L  +M D  + PD+ +++ +I   C ++D + A  +   
Sbjct: 353 GTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGM 412

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M ++  +P+ V +  ++D L K G++D+A R+ ELM+     P  +T+++++DG C  GR
Sbjct: 413 MSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMV-ESFRPGVATYNSVLDGLCGVGR 471

Query: 374 VNHAKELFVSM 384
           +  A  +   M
Sbjct: 472 IEEAVRMVEGM 482



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 144/308 (46%), Gaps = 36/308 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     ++K  D    L + ++  G  PD+  YN +I   C+  R+     +
Sbjct: 239 PTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQAL 298

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRI-----MEAA-ALFTKLKAFGCKPNVITYSTL 218
           L +++ +   PD + ++++I GLC + R+     +EAA  +   +K  GC PN  TY+ +
Sbjct: 299 LKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVV 358

Query: 219 INGLCRTGHTIVALNLFEEMANGN-------------------------GKFGVV----C 249
           I GLCR   +  AL L   M +                             FG++    C
Sbjct: 359 IEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSEREC 418

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KPN V Y  +IDGL K G VDKA  +F ++  ++  P V TYNS++ G C      EA  
Sbjct: 419 KPNPVAYAALIDGLSKGGEVDKAVRVF-ELMVESFRPGVATYNSVLDGLCGVGRIEEAVR 477

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++  M+ +   PD  ++  ++  LC+   ++EA  L + +  +G       ++ L++  C
Sbjct: 478 MVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAMEVGVYNVLVNELC 537

Query: 370 LTGRVNHA 377
              R++ A
Sbjct: 538 KKKRLSDA 545



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 126/272 (46%), Gaps = 14/272 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL------FKRLNSTGLFPD 141
           ++A  +   M+  R  P  +T   ++ G L K    D    L       + +  TG  P+
Sbjct: 293 DDAQALLKQMVAARCVPDVITYSTIIDG-LCKDWRVDADWKLEAACEILEMMKQTGCPPN 351

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
             TY ++I   C+  +      +L R++ S   PD  +F+ +I  LC    +  A  +F 
Sbjct: 352 AGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAYKIFG 411

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            +    CKPN + Y+ LI+GL + G    A+ +FE M           +P   TY +++D
Sbjct: 412 MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESF-------RPGVATYNSVLD 464

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC  G +++A  +   M  K   PD  +Y +LI G C  +   EA  L   +  +G   
Sbjct: 465 GLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRVSCVEEAYELFQAVEAKGFAM 524

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +V  +NV+++ELCK  ++ +A  +   +I  G
Sbjct: 525 EVGVYNVLVNELCKKKRLSDAHGVANKLIEAG 556


>gi|359473390|ref|XP_002268680.2| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
          Length = 748

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 101/289 (34%), Positives = 160/289 (55%), Gaps = 9/289 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           ++P+P    ++N +   L KT        + + + S G+ PD   Y  LI+ FCK+G VS
Sbjct: 319 LKPNP---YTYNGVILLLCKTGKVAEAERVLREMISEGIAPDGVIYTTLIDGFCKLGNVS 375

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
             + +   + +   +PD + +T++I GLC   R+MEA  LF ++     +P+ +TY+ LI
Sbjct: 376 SAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 435

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +G C+ G    A +L  +M     + G+   PN VTYT + DGLCK G VD A EL  +M
Sbjct: 436 DGYCKEGKMKEAFSLHNQML----QMGLT--PNIVTYTALADGLCKCGEVDTANELLHEM 489

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             K +  ++ TYNSL++G C A + ++A  L+ +M   G  PD VT+  +MD  CK+ +M
Sbjct: 490 CRKGLELNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREM 549

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             A  LL  M+ R + P   TF+ LM+GFC++G +   ++L   M   G
Sbjct: 550 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKG 598



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 163/311 (52%), Gaps = 10/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKT-KHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +FD MLN       + S NL    L++        L +F      G+  +  +YN
Sbjct: 199 DEARKLFDKMLNY-GLLISVDSCNLFISHLSEDLDGIKIALKVFVEFPEVGVCWNTASYN 257

Query: 147 ILINCFCKMGRVSHGFVVLGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           I+ +  C++GRV     +L ++ LR C  PD ++++++I G C    +     L  +++ 
Sbjct: 258 IITHSLCQLGRVVEAHQLLLQMELRGCI-PDVISYSTVINGYCQVGELQRVLKLIEEMQI 316

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G KPN  TY+ +I  LC+TG    A  +  EM +     G+   P+ V YTT+IDG CK
Sbjct: 317 KGLKPNPYTYNGVILLLCKTGKVAEAERVLREMISE----GIA--PDGVIYTTLIDGFCK 370

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G V  A  LF +M+ + I+PD +TY ++I G C      EA+ L  EM+ + ++PD VT
Sbjct: 371 LGNVSSAYRLFDEMQKRKISPDFITYTAVICGLCQTGRVMEADKLFHEMVCKRLEPDEVT 430

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +  ++D  CK GKM EA  L   M+  G+ PN  T++ L DG C  G V+ A EL   M 
Sbjct: 431 YTALIDGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMC 490

Query: 386 SMGCKHTVFSY 396
             G +  +++Y
Sbjct: 491 RKGLELNIYTY 501



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ +FD M   + SP  +T   ++ G L +T        LF  +    L PD  TY  LI
Sbjct: 377 AYRLFDEMQKRKISPDFITYTAVICG-LCQTGRVMEADKLFHEMVCKRLEPDEVTYTALI 435

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G++   F +  ++L+   TP+ V +T+L  GLC    +  A  L  ++   G +
Sbjct: 436 DGYCKEGKMKEAFSLHNQMLQMGLTPNIVTYTALADGLCKCGEVDTANELLHEMCRKGLE 495

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            N+ TY++L+NGLC+ G+   A+ L ++M            P+ VTYTT++D  CK   +
Sbjct: 496 LNIYTYNSLVNGLCKAGNIDQAVKLMKDMEVAG------FHPDAVTYTTLMDAYCKSREM 549

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A EL  QM D+ + P VVT+N L++GFC +    +   LL  M+++G+ P+  T+N +
Sbjct: 550 VRAHELLRQMLDRELQPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEKGIMPNATTYNSL 609

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           + + C    M   + +   M  +GV P+ +T++ L+ G C    +  A  L   M   G 
Sbjct: 610 IKQYCIRNNMRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGF 669

Query: 390 KHTVFSY 396
             TV SY
Sbjct: 670 NLTVSSY 676



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/278 (29%), Positives = 129/278 (46%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + ML M  +P  +T +  L   L K    DT   L   +   GL  ++YTYN L
Sbjct: 446 EAFSLHNQMLQMGLTPNIVT-YTALADGLCKCGEVDTANELLHEMCRKGLELNIYTYNSL 504

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  CK G +     ++  +  + F PDAV +T+L+   C    ++ A  L  ++     
Sbjct: 505 VNGLCKAGNIDQAVKLMKDMEVAGFHPDAVTYTTLMDAYCKSREMVRAHELLRQMLDREL 564

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P V+T++ L+NG C +G       L + M       G++  PN  TY ++I   C    
Sbjct: 565 QPTVVTFNVLMNGFCMSGMLEDGEKLLKWMLEK----GIM--PNATTYNSLIKQYCIRNN 618

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  K + PD  TYN LI G C A +  EA  L  +M+ +G    V ++N 
Sbjct: 619 MRATTEIYRGMCAKGVVPDGNTYNILIKGHCKARNMKEAWFLHRDMVGKGFNLTVSSYNA 678

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    K  K  EA  L E M   G+  +   ++   D
Sbjct: 679 LIKGFYKRKKFLEARELFEQMRREGLVADREIYNIFAD 716


>gi|356529689|ref|XP_003533421.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Glycine max]
          Length = 892

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/359 (32%), Positives = 172/359 (47%), Gaps = 75/359 (20%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRL---NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           LTS+N L  CL++    D ++SL+K +   N   +FP+L T N ++N +CK+G ++   +
Sbjct: 151 LTSYNRLLMCLSRFSMVDEMISLYKEMLTDNGNSVFPNLITLNTMLNSYCKLGNMAVARL 210

Query: 164 VLGRILRSCFTPD-------------------------------AVAFTSLIKGLCAESR 192
              RILR    PD                               AV++T+LI GLC   +
Sbjct: 211 FFVRILRCEPGPDLFTYTSLVLGYCRNDDVERACGVFCVMPRRNAVSYTNLIHGLCEAGK 270

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + EA   + +++  GC P V TY+ L+  LC +G  + AL+LF EM          C+PN
Sbjct: 271 LHEALEFWARMREDGCFPTVRTYTVLVCALCESGRELEALSLFGEMRERG------CEPN 324

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV----------------------- 289
             TYT +ID LCKEG +D+A ++  +M +K + P VV                       
Sbjct: 325 VYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLG 384

Query: 290 ------------TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
                       TYN LI GFC     + A  LL +M++  + PDVVT+N ++  LC+ G
Sbjct: 385 LMESKKVCPNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVG 444

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +D ASRL  LMI  G +P+  TF+  M   C  GRV  A ++  S++    K    +Y
Sbjct: 445 VVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAY 503



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 144/288 (50%), Gaps = 7/288 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P    ++  NL+ G     K ++  L  + R+   G FP + TY +L+   C+ GR    
Sbjct: 251 PRRNAVSYTNLIHGLCEAGKLHEA-LEFWARMREDGCFPTVRTYTVLVCALCESGRELEA 309

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             + G +      P+   +T LI  LC E R+ EA  +  ++   G  P+V+ ++ LI  
Sbjct: 310 LSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKMLNEMVEKGVAPSVVPFNALIGS 369

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+ G    A+ +   M +       VC PN  TY  +I G C+   +D+A  L  +M +
Sbjct: 370 YCKRGMMEDAVGVLGLMESKK-----VC-PNVRTYNELICGFCRGKSMDRAMALLNKMVE 423

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             ++PDVVTYN+LIHG C     + A+ L   M+  G  PD  TFN  M  LC+ G++ E
Sbjct: 424 SKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNAFMVCLCRMGRVGE 483

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           A ++LE +  + V  N   ++ L+DG+C  G++ HA  LF  M +  C
Sbjct: 484 AHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEEC 531



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L   L ++      LSLF  +   G  P++YTY +LI+  CK GR+     +
Sbjct: 288 PTVRTYTVLVCALCESGRELEALSLFGEMRERGCEPNVYTYTVLIDYLCKEGRMDEALKM 347

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P  V F +LI   C    + +A  +   +++    PNV TY+ LI G CR
Sbjct: 348 LNEMVEKGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNELICGFCR 407

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L  +M            P+ VTY T+I GLC+ G VD A  LF  M     
Sbjct: 408 GKSMDRAMALLNKMVESK------LSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDGF 461

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD  T+N+ +   C      EA+ +L  + ++ V+ +   +  ++D  CK GK++ A+ 
Sbjct: 462 SPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAAS 521

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+     PN+ TF+ ++DG    G+V  A  L   M     K T+ +Y
Sbjct: 522 LFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTY 573



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     + K  D  ++L  ++  + L PD+ TYN LI+  C++G V     +
Sbjct: 393 PNVRTYNELICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRL 452

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R  F+PD   F + +  LC   R+ EA  +   LK    K N   Y+ LI+G C+
Sbjct: 453 FRLMIRDGFSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCK 512

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +LF+ M          C PN++T+  +IDGL KEG V  A  L   M   ++
Sbjct: 513 AGKIEHAASLFKRM------LAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDV 566

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P + TYN L+       D++ AN +L  ++  G QP+VVT+   +   C  G+++EA  
Sbjct: 567 KPTLHTYNILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEE 626

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++  +   GV  ++  ++ L++ +   G ++ A  +   M   GC+ +  +Y
Sbjct: 627 MVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTY 678



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 150/309 (48%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+  +   P +  FN L G   K    +  + +   + S  + P++ TYN 
Sbjct: 342 DEALKMLNEMVE-KGVAPSVVPFNALIGSYCKRGMMEDAVGVLGLMESKKVCPNVRTYNE 400

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC+   +     +L +++ S  +PD V + +LI GLC    +  A+ LF  +   G
Sbjct: 401 LICGFCRGKSMDRAMALLNKMVESKLSPDVVTYNTLIHGLCEVGVVDSASRLFRLMIRDG 460

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  T++  +  LCR G    A  + E +   +       K N   YT +IDG CK G
Sbjct: 461 FSPDQWTFNAFMVCLCRMGRVGEAHQILESLKEKH------VKANEHAYTALIDGYCKAG 514

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  LF +M  +   P+ +T+N +I G        +A  L+ +M    V+P + T+N
Sbjct: 515 KIEHAASLFKRMLAEECLPNSITFNVMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYN 574

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++E+ K    D A+ +L  +I  G  PN  T++  +  +C  GR+  A+E+ + +++ 
Sbjct: 575 ILVEEVLKEYDFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNE 634

Query: 388 GCKHTVFSY 396
           G     F Y
Sbjct: 635 GVLLDSFIY 643



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 147/292 (50%), Gaps = 10/292 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  + + M+  + SP  +T +N L   L +    D+   LF+ +   G  PD +T+N 
Sbjct: 412 DRAMALLNKMVESKLSPDVVT-YNTLIHGLCEVGVVDSASRLFRLMIRDGFSPDQWTFNA 470

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            + C C+MGRV     +L  +       +  A+T+LI G C   +I  AA+LF ++ A  
Sbjct: 471 FMVCLCRMGRVGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEE 530

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN IT++ +I+GL + G    A+ L E+MA    KF V  KP   TY  +++ + KE 
Sbjct: 531 CLPNSITFNVMIDGLRKEGKVQDAMLLVEDMA----KFDV--KPTLHTYNILVEEVLKEY 584

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A E+  ++      P+VVTY + I  +C      EA  ++I++ ++GV  D   +N
Sbjct: 585 DFDRANEILNRLISSGYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYN 644

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           ++++     G +D A  +L  M   G  P+  T+S LM    +     H KE
Sbjct: 645 LLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIE---KHKKE 693



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 166/403 (41%), Gaps = 79/403 (19%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITP--------NEAFCIFDYMLNMRPSPPPLTSFN 111
           V +   + + LKE+   + +   TA+            A  +F  ML     P  +T FN
Sbjct: 481 VGEAHQILESLKEKHVKANEHAYTALIDGYCKAGKIEHAASLFKRMLAEECLPNSIT-FN 539

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           ++   L K       + L + +    + P L+TYNIL+    K         +L R++ S
Sbjct: 540 VMIDGLRKEGKVQDAMLLVEDMAKFDVKPTLHTYNILVEEVLKEYDFDRANEILNRLISS 599

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK--------------------------A 205
            + P+ V +T+ IK  C++ R+ EA  +  K+K                          A
Sbjct: 600 GYQPNVVTYTAFIKAYCSQGRLEEAEEMVIKIKNEGVLLDSFIYNLLINAYGCMGLLDSA 659

Query: 206 FG---------CKPNVITYSTLINGLC-----RTGHTIVALN------------------ 233
           FG         C+P+ +TYS L+  L      + G   V L+                  
Sbjct: 660 FGVLRRMFGTGCEPSYLTYSILMKHLVIEKHKKEGSNPVGLDVSLTNISVDNTDIWSKID 719

Query: 234 ------LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
                 LFE+MA         C PN  TY+ +I+GLCK G ++ A  L+  M++  I+P 
Sbjct: 720 FGITTVLFEKMAECG------CVPNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPS 773

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            + +NSL+   C    + EA  LL  MM+      + ++ +++  L +    ++A  +  
Sbjct: 774 EIIHNSLLSSCCKLGMFGEAVTLLDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFC 833

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            ++  G N +   +  L+DG   TG V+   EL   ME  GC+
Sbjct: 834 SLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNGCR 876



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 117/264 (44%), Gaps = 35/264 (13%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           ++ + G+  D + YN+LIN +  MG +   F VL R+  +   P  + ++ L+K L  E 
Sbjct: 630 KIKNEGVLLDSFIYNLLINAYGCMGLLDSAFGVLRRMFGTGCEPSYLTYSILMKHLVIEK 689

Query: 192 RIMEAA-----------------------------ALFTKLKAFGCKPNVITYSTLINGL 222
              E +                              LF K+   GC PN+ TYS LINGL
Sbjct: 690 HKKEGSNPVGLDVSLTNISVDNTDIWSKIDFGITTVLFEKMAECGCVPNLNTYSKLINGL 749

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G   VA +L+  M  G    G+   P+ + + +++   CK G   +A  L   M + 
Sbjct: 750 CKVGRLNVAFSLYHHMREG----GI--SPSEIIHNSLLSSCCKLGMFGEAVTLLDSMMEC 803

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           +    + +Y  LI G     +  +A  +   ++  G   D V + V++D L K G +D+ 
Sbjct: 804 SHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQC 863

Query: 343 SRLLELMILRGVNPNTSTFSTLMD 366
           S LL LM   G   +  T+S LM 
Sbjct: 864 SELLNLMEKNGCRLHPETYSMLMQ 887



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/162 (24%), Positives = 71/162 (43%), Gaps = 12/162 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L K    +   SL+  +   G+ P    +N L++  CK+G       +
Sbjct: 737 PNLNTYSKLINGLCKVGRLNVAFSLYHHMREGGISPSEIIHNSLLSSCCKLGMFGEAVTL 796

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++         ++  LI GL  +    +A A+F  L   G   + + +  LI+GL +
Sbjct: 797 LDSMMECSHLAHLESYKLLICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAK 856

Query: 225 TGHTIVA---LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           TG+       LNL E+  NG       C+ +  TY+ ++  L
Sbjct: 857 TGYVDQCSELLNLMEK--NG-------CRLHPETYSMLMQEL 889



 Score = 42.0 bits (97), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 34/138 (24%), Positives = 57/138 (41%), Gaps = 1/138 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N AF ++ +M     SP  +   +LL  C  K   +   ++L   +        L +Y +
Sbjct: 756 NVAFSLYHHMREGGISPSEIIHNSLLSSC-CKLGMFGEAVTLLDSMMECSHLAHLESYKL 814

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI    +         V   +LR  +  D VA+  LI GL     + + + L   ++  G
Sbjct: 815 LICGLFEQMNKEKAEAVFCSLLRCGYNYDEVAWKVLIDGLAKTGYVDQCSELLNLMEKNG 874

Query: 208 CKPNVITYSTLINGLCRT 225
           C+ +  TYS L+  L R 
Sbjct: 875 CRLHPETYSMLMQELNRA 892


>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
 gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
          Length = 1320

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 143/261 (54%), Gaps = 6/261 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
            L + +   G+FPD   Y  +I+ FCK+G VS    +   + R    PD V +TS+I G+
Sbjct: 333 QLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGI 392

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   +++EA  +F ++   G +P+ +TY+ LI+G C+ G    A ++  +M         
Sbjct: 393 CKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKG----- 447

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              PN VTYT + DGLCK G +D A EL  +M  K + P+V TYN++++G C   +  + 
Sbjct: 448 -LTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQT 506

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L+ EM   G  PD +T+  +MD  CK G+M +A  LL +M+ + + P   TF+ LM+G
Sbjct: 507 VKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVLMNG 566

Query: 368 FCLTGRVNHAKELFVSMESMG 388
           FC++G +   + L   M   G
Sbjct: 567 FCMSGMLEDGERLIEWMLEKG 587



 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 153/273 (56%), Gaps = 6/273 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D VL L   L   GL PD Y YN +I   CK G V     +L  + +    PD V +T++
Sbjct: 294 DKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTV 353

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I G C    +  A  LF +++     P+++TY+++I+G+C++G  + A  +F EM     
Sbjct: 354 ISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKG- 412

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                 +P+ VTYT +IDG CK G + +A  +  QM  K + P+VVTY +L  G C   +
Sbjct: 413 -----LEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGE 467

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            + AN LL EM  +G+QP+V T+N I++ LCK G +++  +L+E M L G  P+T T++T
Sbjct: 468 IDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTT 527

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LMD +C  G +  A EL   M +   + T+ ++
Sbjct: 528 LMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTF 560



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 85/261 (32%), Positives = 145/261 (55%), Gaps = 6/261 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +    + PD+ TY  +I+  CK G++     +   +L     PD V +T+LI G C
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYC 428

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               + EA ++  ++   G  PNV+TY+ L +GLC+ G   VA  L  EM+         
Sbjct: 429 KAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKG------ 482

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +PN  TY TI++GLCK G +++  +L  +M      PD +TY +L+  +C   +  +A+
Sbjct: 483 LQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAH 542

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL  M+++ +QP +VTFNV+M+  C +G +++  RL+E M+ +G+ PN +TF++LM  +
Sbjct: 543 ELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQY 602

Query: 369 CLTGRVNHAKELFVSMESMGC 389
           C+   +    E++ +M   G 
Sbjct: 603 CIKNNMRATTEIYKAMHDRGV 623



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 161/304 (52%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M   +  P  +T  +++ G + K+        +F  +   GL PD  TY  LI+ +
Sbjct: 369 LFDEMRRKKIVPDIVTYTSVIHG-ICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGY 427

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G +   F V  ++++   TP+ V +T+L  GLC    I  A  L  ++   G +PNV
Sbjct: 428 CKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNV 487

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+T++NGLC+ G+    + L EEM +  G +     P+T+TYTT++D  CK G + KA
Sbjct: 488 YTYNTIVNGLCKIGNIEQTVKLMEEM-DLAGFY-----PDTITYTTLMDAYCKMGEMAKA 541

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            EL   M +K + P +VT+N L++GFC +    +   L+  M+++G+ P+  TFN +M +
Sbjct: 542 HELLRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQ 601

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C    M   + + + M  RGV P+++T++ L+ G C    +  A  L   M   G   T
Sbjct: 602 YCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVT 661

Query: 393 VFSY 396
             +Y
Sbjct: 662 AATY 665



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 158/286 (55%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++  CL +        +L  ++   G FPD+ +Y ++++ +C++G +     ++  +  
Sbjct: 246 NIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKG 305

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD   + ++I  LC    ++EA  L   ++ +G  P+ + Y+T+I+G C+ G+   
Sbjct: 306 KGLKPDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSA 365

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  LF+EM            P+ VTYT++I G+CK G + +A+E+F +M  K + PD VT
Sbjct: 366 ACKLFDEMRRKK------IVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVT 419

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y +LI G+C A +  EA  +  +M+ +G+ P+VVT+  + D LCKNG++D A+ LL  M 
Sbjct: 420 YTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMS 479

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +G+ PN  T++T+++G C  G +    +L   M+  G      +Y
Sbjct: 480 RKGLQPNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITY 525



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/270 (33%), Positives = 149/270 (55%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           + +F+     G+  +  + NI+++C C++G+V     +L ++      PD V++  ++ G
Sbjct: 227 VKVFEEFPELGVCWNTVSCNIVLHCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSG 286

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    + +   L  +LK  G KP+   Y+ +I  LC+ G  + A    E++  G  K+G
Sbjct: 287 YCRIGELDKVLKLVDELKGKGLKPDEYIYNNIILLLCKNGEVVEA----EQLLRGMRKWG 342

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           V   P+ V YTT+I G CK G V  A +LF +M+ K I PD+VTY S+IHG C +    E
Sbjct: 343 VF--PDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDIVTYTSVIHGICKSGKMVE 400

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +  EM+ +G++PD VT+  ++D  CK G+M EA  +   M+ +G+ PN  T++ L D
Sbjct: 401 AREMFNEMLVKGLEPDEVTYTALIDGYCKAGEMKEAFSVHNQMVQKGLTPNVVTYTALAD 460

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G ++ A EL   M   G +  V++Y
Sbjct: 461 GLCKNGEIDVANELLHEMSRKGLQPNVYTY 490



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 73/278 (26%), Positives = 130/278 (46%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  +   P + ++  L   L K    D    L   ++  GL P++YTYN +
Sbjct: 435 EAFSVHNQMVQ-KGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTI 493

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  CK+G +     ++  +  + F PD + +T+L+   C    + +A  L   +     
Sbjct: 494 VNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRL 553

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P ++T++ L+NG C +G       L E M       G++  PN  T+ +++   C +  
Sbjct: 554 QPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEK----GIM--PNATTFNSLMKQYCIKNN 607

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M D+ + PD  TYN LI G C A +  EA  L  EM+++G      T++ 
Sbjct: 608 MRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDA 667

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    K  K  EA +L E M   G+      +   +D
Sbjct: 668 LIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVD 705



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/236 (24%), Positives = 109/236 (46%), Gaps = 6/236 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K  + +  + L + ++  G +PD  TY  L++ +CKMG ++    +
Sbjct: 485 PNVYTYNTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHEL 544

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P  V F  L+ G C    + +   L   +   G  PN  T+++L+   C 
Sbjct: 545 LRIMLNKRLQPTLVTFNVLMNGFCMSGMLEDGERLIEWMLEKGIMPNATTFNSLMKQYCI 604

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +      +++ M +     GV+  P++ TY  +I G CK   + +A  L  +M +K  
Sbjct: 605 KNNMRATTEIYKAMHDR----GVM--PDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGY 658

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +    TY++LI GF     + EA  L  EM   G+  +   +++ +D   + G  +
Sbjct: 659 SVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYEEGNWE 714



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/214 (23%), Positives = 103/214 (48%), Gaps = 14/214 (6%)

Query: 183 LIKGLCAESRI--MEAAALFTKL-----KAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           L+   CA+ +I   ++  LFT++     K +G  P  + +      L   G  + A  LF
Sbjct: 137 LVFEFCAKPKIDVSKSFHLFTEMLIYTYKDWGSHP--LVFDLYFQVLVENGFVLEAQKLF 194

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            ++     ++GVV   ++            EG +  A ++F +  +  +  + V+ N ++
Sbjct: 195 HKLL----RYGVVVSVDSCNLFLSRLSCNFEG-IKIAVKVFEEFPELGVCWNTVSCNIVL 249

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           H  C      EA+ LL++M D+G  PDVV++ V++   C+ G++D+  +L++ +  +G+ 
Sbjct: 250 HCLCQLGKVREAHNLLVQMTDRGNFPDVVSYGVVVSGYCRIGELDKVLKLVDELKGKGLK 309

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           P+   ++ ++   C  G V  A++L   M   G 
Sbjct: 310 PDEYIYNNIILLLCKNGEVVEAEQLLRGMRKWGV 343



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 35/145 (24%), Positives = 63/145 (43%), Gaps = 1/145 (0%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T+FN L        +      ++K ++  G+ PD  TYNILI   CK   +   + +
Sbjct: 590 PNATTFNSLMKQYCIKNNMRATTEIYKAMHDRGVMPDSNTYNILIKGHCKARNMKEAWFL 649

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++   ++  A  + +LI+G     + +EA  LF +++  G       Y   ++    
Sbjct: 650 HKEMVEKGYSVTAATYDALIRGFYKRKKFVEARKLFEEMRKHGLVAEKDIYDIFVDVNYE 709

Query: 225 TGHTIVALNLFEE-MANGNGKFGVV 248
            G+  + L L +E M   +G   VV
Sbjct: 710 EGNWEITLELCDEFMTELSGTIFVV 734


>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 805

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 125/397 (31%), Positives = 190/397 (47%), Gaps = 98/397 (24%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK-HYDTVLSL----------------- 129
           + A   F+ ML MR +P  +  FN +   L KTK HY TVLSL                 
Sbjct: 187 DNAVLSFNRMLQMRHTPS-IVEFNKILTYLIKTKNHYPTVLSLSTQMESKGVKPDLFTLS 245

Query: 130 -------FK---------------------RLNSTGLFPDLY----------TYNILINC 151
                  FK                     ++N   LF D            TY ILIN 
Sbjct: 246 ILINCYYFKMGYEPNTITLTTLIKGLCLNGKVNEALLFHDHVLALGFHLNHVTYGILING 305

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-------- 203
            CKMG+      VL +I       + V ++++I GLC +  +++A  L++++        
Sbjct: 306 LCKMGQTRAALQVLRQIEGKLVNTNVVMYSTVIDGLCKDKLVIDAYGLYSEMIVKRIPPT 365

Query: 204 ----KAFG---------CKPNVITYSTLINGLCRTG------HTIV-----ALNLFEEMA 239
               KAF            PNV T++ L++ LC+ G      + I+     ALNLF EM 
Sbjct: 366 VVTFKAFSLFHEMVLKNINPNVYTFNILVDALCKDGKIKEAKNVIIKMVDEALNLFTEMH 425

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    CKPNTV+Y T+IDG CK G +  A +L  QM+D+   P+V+TYNSL+H  C
Sbjct: 426 ---------CKPNTVSYNTLIDGFCKSGRLSHAWKLLDQMRDRGQPPNVITYNSLLHALC 476

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
             +  ++A  L+    DQG+QPD+ T+N ++D LCK G++ +A  + + ++++G N  T 
Sbjct: 477 KNHHVDKAIALVNNFKDQGIQPDMHTYNTLVDGLCKQGRLKDAQLIFQDLLIKGYNLPTW 536

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ +++G CL G ++ A+ L   ME  GC   V +Y
Sbjct: 537 TYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTY 573



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 137/272 (50%), Gaps = 29/272 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ ++  M+  R  PP + +F                 SLF  +    + P++YT+NIL
Sbjct: 349 DAYGLYSEMIVKR-IPPTVVTFK--------------AFSLFHEMVLKNINPNVYTFNIL 393

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFT--------PDAVAFTSLIKGLCAESRIMEAAALF 200
           ++  CK G++     V+ +++             P+ V++ +LI G C   R+  A  L 
Sbjct: 394 VDALCKDGKIKEAKNVIIKMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLL 453

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            +++  G  PNVITY++L++ LC+  H   A+ L     +         +P+  TY T++
Sbjct: 454 DQMRDRGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQG------IQPDMHTYNTLV 507

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DGLCK+G +  A+ +F  +  K  N    TYN +I+G C     +EA  LL +M D G  
Sbjct: 508 DGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNGCI 567

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           PDVVT+  I+  L +  + D+A +L+  +I+R
Sbjct: 568 PDVVTYQTIIHALFEKDENDKAEKLVRELIVR 599



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 46/151 (30%), Positives = 76/151 (50%), Gaps = 1/151 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ + D M + R  PP + ++N L   L K  H D  ++L       G+ PD++TYN 
Sbjct: 447 SHAWKLLDQMRD-RGQPPNVITYNSLLHALCKNHHVDKAIALVNNFKDQGIQPDMHTYNT 505

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR+    ++   +L   +      +  +I GLC E  + EA  L +K++  G
Sbjct: 506 LVDGLCKQGRLKDAQLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNG 565

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           C P+V+TY T+I+ L        A  L  E+
Sbjct: 566 CIPDVVTYQTIIHALFEKDENDKAEKLVREL 596


>gi|357499997|ref|XP_003620287.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|357500057|ref|XP_003620317.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495302|gb|AES76505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495332|gb|AES76535.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 291

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/242 (38%), Positives = 144/242 (59%), Gaps = 6/242 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+ +L+ +   P +  F  + G L K  HY TV+SL +++   G   +L T +ILIN F 
Sbjct: 35  FNRLLHQQNPTPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFS 94

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           ++G+    F VL +I +  + PDA+  TSLIKGLC + +I +A     KL A G + N +
Sbjct: 95  QLGQNPLSFSVLAKIFKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHV 154

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +Y TLINGLC+ G T  AL L   +       G + +P+ V YT IID +CK+  V++A 
Sbjct: 155 SYGTLINGLCKVGQTRAALQLLRRVD------GKLVQPDVVMYTMIIDSMCKDKLVNEAF 208

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L+ +M  K I+PDVVTY++LI GFC     N++  L  +M+ + + P++ TFN+++D  
Sbjct: 209 DLYSEMVSKGISPDVVTYSALISGFCILGKLNDSIGLFHKMISEKINPNMYTFNILIDAF 268

Query: 334 CK 335
            +
Sbjct: 269 VE 270



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 109/213 (51%), Gaps = 6/213 (2%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           TP    F  ++  L   +      +L  +++  G   N++T S LIN   + G   ++ +
Sbjct: 45  TPSIFQFGKILGSLVKINHYSTVVSLHQQMELNGFVSNLVTLSILINSFSQLGQNPLSFS 104

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +  ++      F     P+ +T T++I GLC +G + +A     ++       + V+Y +
Sbjct: 105 VLAKI------FKKGYDPDAITLTSLIKGLCLKGQIHQALHFHDKLAALGFRFNHVSYGT 158

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C       A  LL  +  + VQPDVV + +I+D +CK+  ++EA  L   M+ +G
Sbjct: 159 LINGLCKVGQTRAALQLLRRVDGKLVQPDVVMYTMIIDSMCKDKLVNEAFDLYSEMVSKG 218

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++P+  T+S L+ GFC+ G++N +  LF  M S
Sbjct: 219 ISPDVVTYSALISGFCILGKLNDSIGLFHKMIS 251



 Score = 37.7 bits (86), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF ++  M++   SP  +T   L+ G     K  D++  LF ++ S  + P++YT+NI
Sbjct: 205 NEAFDLYSEMVSKGISPDVVTYSALISGFCILGKLNDSI-GLFHKMISEKINPNMYTFNI 263

Query: 148 LINCFCKM 155
           LI+ F ++
Sbjct: 264 LIDAFVEI 271


>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
 gi|224033903|gb|ACN36027.1| unknown [Zea mays]
          Length = 655

 Score =  184 bits (467), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  + D M     +P PP+  ++++     +   + + + + + L++ G   D+   N+
Sbjct: 140 DALAVLDEMPRRGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 197

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  C  G V     +L  +      PD V++ +++KGLC   R      L  ++    
Sbjct: 198 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMA 257

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN++T++TLI+ LCR G       +  +M          C P+   Y TIIDG+CKEG
Sbjct: 258 CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG------CTPDIRMYATIIDGICKEG 311

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E+  +M    + P+VV YN+L+ G C A  W E   LL EM D+    D VTFN
Sbjct: 312 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  C+NG +D    LLE M+ RG  P+  T++T+++GFC  G ++ A  L  SM + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 388 GCKHTVFSY 396
           GCK    SY
Sbjct: 432 GCKPNTISY 440



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 8/307 (2%)

Query: 92  CIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           C+ + M  M     PP + +FN L   L +   ++ V  +  ++   G  PD+  Y  +I
Sbjct: 245 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 304

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +     +L R+      P+ V + +L+KGLC+  R  E   L  ++    C 
Sbjct: 305 DGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 364

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + +T++ L++  C+ G     + L E+M          C P+ +TYTT+I+G CKEG +
Sbjct: 365 LDDVTFNILVDFFCQNGLVDRVIELLEQMLERG------CMPDVITYTTVINGFCKEGLI 418

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A  L   M      P+ ++Y  ++ G C A  W +A  L+ +M+ QG   + +TFN +
Sbjct: 419 DEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTL 478

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LCK G +++A  LL+ M++ G +P+  ++ST++DG    G+ + A EL   M + G 
Sbjct: 479 INFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGM 538

Query: 390 KHTVFSY 396
                 Y
Sbjct: 539 SPNTIIY 545



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 149/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC+  R ++A  L +++   GC  N IT++TLIN LC+ G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  D+A EL   M +K ++P
Sbjct: 488 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK G+ + A   L
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G V  A+E+   + S G
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 12/220 (5%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           +V  +SLI+ LCA  R  EAA   +          V+ Y+ ++ G CR G    A  L  
Sbjct: 58  SVRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLESARRL-- 112

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                     V   PN  TY  ++  LC  G +  A  +  +M  +   P    Y+ ++ 
Sbjct: 113 -------AAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 165

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C    +  A  +L ++  +G   DV   N++++ +C  G +DEA  LL  +   G  P
Sbjct: 166 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEP 225

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +++ ++ G C+  R    +EL   M  M C   + ++
Sbjct: 226 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 265



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    D  L L   + + G+ P+   Y+ + +   + GR++    +
Sbjct: 505 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQM 564

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A      + + GC PN  TY+ LI GL  
Sbjct: 565 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLAS 624

Query: 225 TGHTIVALNLFEEM 238
            G    A  +  E+
Sbjct: 625 EGFVKEAQEMLTEL 638



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+N   SP  +  ++ +   L++    + V+ +F  +  T +  D   YN 
Sbjct: 524 DEALELLNVMVNKGMSPNTII-YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNA 582

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G        L  ++ S   P+   +T LI+GL +E  + EA  + T+L + G
Sbjct: 583 VISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642


>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
           Group]
 gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
 gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
          Length = 461

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/276 (36%), Positives = 154/276 (55%), Gaps = 8/276 (2%)

Query: 125 TVLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
             +S + R+   G   + P+LYTY++LI C C+ GR+  GF  LG +++  F  +A+ FT
Sbjct: 64  AAVSRYNRMARAGADEVTPNLYTYSVLIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFT 123

Query: 182 SLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            L+KGLCA+ R  +A  +   ++   GC PNV + + L+ GLC    +  AL L + M +
Sbjct: 124 PLLKGLCADKRTSDAMDIVLCRMTQLGCIPNVFSCTILLKGLCDENRSQEALELLQMMPD 183

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
             G     C P+ V Y T+I+G  KEG  DKA   + +M D+ I PDVVTY+S+I   C 
Sbjct: 184 DGGD----CPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCK 239

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           A   ++A  +L  M+  GV P+  T+N I+   C +G++ EA   L++M   GV P+  T
Sbjct: 240 AQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVT 299

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + LMD  C   R   A+++F SM   G K  + +Y
Sbjct: 300 CNLLMDYLCKNRRCTEARKIFNSMTKCGLKPDITTY 335



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 75/290 (25%), Positives = 138/290 (47%), Gaps = 11/290 (3%)

Query: 97  MLNMRPS-----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +L M P      PP +  +N +     K    D   + +  +   G+ PD+ TY+ +I  
Sbjct: 177 LLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAA 236

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK   +     VL  ++++   P+   + S++ G C+  ++ EA      + + G +P+
Sbjct: 237 LCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPD 296

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+T + L++ LC+      A  +F  M     K G+  KP+  TY T++ G   +G + +
Sbjct: 297 VVTCNLLMDYLCKNRRCTEARKIFNSMT----KCGL--KPDITTYCTLLQGYATKGALVE 350

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             +L   M    I P+   +N LI  +      +EA  +  +M  QG+ P+ V +  ++D
Sbjct: 351 MHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVID 410

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            LCK G++ +A   L+ MI  G+ P+   ++ L+ GFC   +   A+EL 
Sbjct: 411 VLCKLGRVYDAVLTLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKAEELI 460



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 134/294 (45%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGF 162
           P + S  +L   L         L L + +   G    PD+  YN +IN F K G     +
Sbjct: 153 PNVFSCTILLKGLCDENRSQEALELLQMMPDDGGDCPPDVVLYNTVINGFFKEGDPDKAY 212

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +      PD V ++S+I  LC    + +A  +   +   G  PN  TY+++++G 
Sbjct: 213 ATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYNSIVHGY 272

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C +G    A+   + M +     GV  +P+ VT   ++D LCK     +A+++F  M   
Sbjct: 273 CSSGQLTEAIGFLKMMCSD----GV--EPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKC 326

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD+ TY +L+ G+       E + LL  M+  G+QP+   FN+++    K  K+DEA
Sbjct: 327 GLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWNGIQPNHHVFNILICAYAKQEKVDEA 386

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   M  +G++PN   + T++D  C  GRV  A      M + G    +  Y
Sbjct: 387 MLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVY 440



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 124/260 (47%), Gaps = 7/260 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P++A+  +  M + +   P + +++ +   L K +  D  + +   +   G+ P+  TYN
Sbjct: 208 PDKAYATYHEMFD-QGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPNCRTYN 266

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +++ +C  G+++     L  +      PD V    L+  LC   R  EA  +F  +   
Sbjct: 267 SIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARKIFNSMTKC 326

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KP++ TY TL+ G    G  +   +L + M   NG      +PN   +  +I    K+
Sbjct: 327 GLKPDITTYCTLLQGYATKGALVEMHDLLDLMV-WNG-----IQPNHHVFNILICAYAKQ 380

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             VD+A  +F +M+ + ++P+ V Y ++I   C      +A   L +M+++G+ PD++ +
Sbjct: 381 EKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVLTLKQMINEGLTPDIIVY 440

Query: 327 NVIMDELCKNGKMDEASRLL 346
             ++   C   K ++A  L+
Sbjct: 441 TPLIHGFCTCDKWEKAEELI 460


>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 680

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 158/296 (53%), Gaps = 9/296 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++ +L   + K+  +   +++   + + G  P++ TYN++IN  C+ GRV  
Sbjct: 181 RGCQPSVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCREGRVDD 240

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L R+    F PD V++T+++KGLCA  R  +   LF ++    C PN +T+  L+ 
Sbjct: 241 AKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMVDKKCVPNEVTFDMLVR 300

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             CR G    A+ + ++M+         C PNT     +I+ +CK+G VD A +    M 
Sbjct: 301 FFCRGGMVERAIQVLQQMSQHG------CTPNTTLCNIVINAICKQGRVDDAYDFLNNMG 354

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
               NPD ++Y +++ G C A  W  A  LL EM+ +   P+ VTFN  +  LC+ G ++
Sbjct: 355 MYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMVRKNCPPNEVTFNTFICILCQKGLIE 414

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A +L+ELM   G +    T++ L+ GFC+ GRV+ A ELF    ++ C+    +Y
Sbjct: 415 QAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALELF---NNLPCEPNTITY 467



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 9/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T  N++   + K    D        +   G  PD  +Y  ++   C+ GR  H   +
Sbjct: 325 PNTTLCNIVINAICKQGRVDDAYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHAKEL 384

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R    P+ V F + I  LC +  I +A  L   +  +GC   ++TY+ L++G C 
Sbjct: 385 LPEMVRKNCPPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCV 444

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL LF  +          C+PNT+TYTT++ GLC    +D A EL  +M  K+ 
Sbjct: 445 QGRVDSALELFNNLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDC 495

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             + VT+N L+  FC      EA  L+ +MM+ G  P+++TFN ++D + K+   +EA  
Sbjct: 496 PLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALE 555

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  ++ +GV+ +T T+S+++D      R   A ++  +++ MG +  V  Y
Sbjct: 556 LLHGLVSKGVSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMY 607



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    +  + L + +   G    + TYN L++ FC  GRV     
Sbjct: 394 PPNEVTFNTFICILCQKGLIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGRVDSALE 453

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +   C  P+ + +T+L+ GLC   R+  AA L  ++    C  N +T++ L++  C
Sbjct: 454 LFNNL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAEMIQKDCPLNAVTFNVLVSFFC 510

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ L  +M          C PN +T+ T++DG+ K+   ++A EL   +  K 
Sbjct: 511 QKGFVEEAMELVNQMMEHG------CTPNLITFNTLLDGITKDCNSEEALELLHGLVSKG 564

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++ D +TY+S++      +   EA  +L  + D G++P V  +N I+  LCK  + D+A 
Sbjct: 565 VSLDTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRPKVGMYNKILFALCKRCETDQAI 624

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+  G  PN ST+  L++G    G +  A+ +   + + G
Sbjct: 625 DFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVLSELYAKG 669



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 117/248 (47%), Gaps = 9/248 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L          D+ L LF  L      P+  TY  L+   C   R+     +L 
Sbjct: 432 IVTYNALVHGFCVQGRVDSALELFNNLPCE---PNTITYTTLLTGLCHAERLDAAAELLA 488

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++     +AV F  L+   C +  + EA  L  ++   GC PN+IT++TL++G+ +  
Sbjct: 489 EMIQKDCPLNAVTFNVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDC 548

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           ++  AL L   + +           +T+TY++++D L +E   ++A ++   ++D  + P
Sbjct: 549 NSEEALELLHGLVSKGVSL------DTITYSSVVDVLSREDRTEEAIQMLHAVQDMGMRP 602

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V  YN ++   C   + ++A      M+  G  P+  T+ ++++ L   G + EA  +L
Sbjct: 603 KVGMYNKILFALCKRCETDQAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEARYVL 662

Query: 347 ELMILRGV 354
             +  +GV
Sbjct: 663 SELYAKGV 670


>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 164/304 (53%), Gaps = 8/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++   +F+  +  R   P + SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 63  HDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 122

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  C+   VS G  VL R+ R     P+ V FTS+I G C   ++ +A A++  + A 
Sbjct: 123 LVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 182

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN +TY+ LING  + G    A+ ++++M        + C P+ VT++++IDG C+ 
Sbjct: 183 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 236

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A  ++  M    I P+V T++ +IH  C  N  +EA  LL E+ +   + P    
Sbjct: 237 GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLLNELNLRPDIAPQAFI 296

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK GK+DEA+ + + M  +G  P+  T++ L+ G+C+  R++ A   F  M 
Sbjct: 297 YNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMV 356

Query: 386 SMGC 389
             GC
Sbjct: 357 EAGC 360



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 158/291 (54%), Gaps = 9/291 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGR 167
           ++N L   L        V++LF+R     ++ PD++++N++I   C++G+V     ++ R
Sbjct: 48  AYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVER 107

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTG 226
           +     +PD V    L+ GLC  + +     +  +L+  G C PNV+T++++I+G C+ G
Sbjct: 108 MNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 167

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ ++ +M       G++  PNTVTY  +I+G  K G +  A E++ QM      P
Sbjct: 168 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 221

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVT++SLI G+C     ++A  +  +M    +QP+V TF++I+  LCK  + DEA  LL
Sbjct: 222 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIGLL 281

Query: 347 ELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + LR  + P    ++ ++D  C  G+V+ A  +   ME  GC+   ++Y
Sbjct: 282 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTY 332



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 79/259 (30%), Positives = 130/259 (50%), Gaps = 6/259 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTS 182
           D   +L  + +  G   + Y YN L++     GRV     +  R ++   ++PD  +F  
Sbjct: 28  DASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDRVYSPDVWSFNV 87

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +IKG+C   ++ +A  L  ++  FGC P+ +T++ L++GLCRT        +   +    
Sbjct: 88  VIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDG 147

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                VC PN VT+T++I G CK G ++ A  ++  M    I P+ VTYN LI+G+    
Sbjct: 148 -----VCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVG 202

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D   A  +  +M      PDVVTF+ ++D  C+ G++D+A R+   M    + PN  TFS
Sbjct: 203 DLGSAVEVYQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFS 262

Query: 363 TLMDGFCLTGRVNHAKELF 381
            ++   C   R + A  L 
Sbjct: 263 IIIHSLCKQNRSDEAIGLL 281



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  +     K    +  ++++  + ++G+ P+  TYN+LIN + K+G +     V
Sbjct: 151 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 210

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ R    PD V F+SLI G C   ++ +A  +++ +     +PNV T+S +I+ LC+
Sbjct: 211 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 270

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A+ L  E+   N +  +   P    Y  +ID LCK G VD+A  +   M++K  
Sbjct: 271 QNRSDEAIGLLNEL---NLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 325

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  LI G+C  +  +EA     EM++ G  PD +T N  +  L K G  +E   
Sbjct: 326 RPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDH 385

Query: 345 LLEL 348
           ++ L
Sbjct: 386 VMRL 389



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 68/226 (30%), Positives = 118/226 (52%), Gaps = 8/226 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAA-LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           ++PDA  F S +   C  + +++A+A L +K   FGC+     Y+ L++ L   G     
Sbjct: 7   YSPDA-RFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           + LFE           V  P+  ++  +I G+C+ G V KA EL  +M +   +PD VT+
Sbjct: 66  VALFERWIQDR-----VYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTH 120

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           N L+ G C  N+ +  + +L  +   GV  P+VVTF  ++   CK GK+++A  +   M+
Sbjct: 121 NILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMV 180

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+ PNT T++ L++G+   G +  A E++  M  + C   V ++
Sbjct: 181 ASGIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPPDVVTF 226


>gi|413948663|gb|AFW81312.1| hypothetical protein ZEAMMB73_082399 [Zea mays]
          Length = 798

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 99/338 (29%), Positives = 173/338 (51%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +FD M+  +  PP + +++ L   L K +  +   ++ + +   G+ P+  TYNI
Sbjct: 220 DKAYFLFDEMIG-QGFPPDVVTYSSLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNI 278

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  +C +G++     +L ++  S   PD V +  LI+  C   R  EA ++F  +   G
Sbjct: 279 MIRGYCSLGQLEEAVRLLKKMSGSGLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKG 338

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVVCK-- 250
            KPN   Y  L++G    G  I   +L + M                    K G V K  
Sbjct: 339 QKPNSTIYHILLHGYATKGALIDVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAM 398

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ V+Y+T+I  LCK G V+ A   F QM  + ++P+++++ SLIHG 
Sbjct: 399 TAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGL 458

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   +W +   L  EM+++G+ PD +  N IMD LCK G++ EA    +++I  GV PN 
Sbjct: 459 CSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPNV 518

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++TL+DG+C  G+++ + + F  M S+G +   ++Y
Sbjct: 519 VSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTY 556



 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 118/338 (34%), Positives = 174/338 (51%), Gaps = 23/338 (6%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKT---- 120
            LE+ +  R +S   G        +A  +FD +L  +  P  + +FN +   +A+     
Sbjct: 14  ELERIILNRHRSGSLG------REDALNLFDELLP-QARPASVHAFNSVLTVVARADSSS 66

Query: 121 --KHYDTV-LSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
             +H   + +SLF  +  +G   +  + Y   ILI CFC +GR+   F      L+  + 
Sbjct: 67  SPRHSAALAVSLFNTMARSGVNMMAANRYIIGILIRCFCTVGRLDLAFAAFALFLKMGWR 126

Query: 175 PDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
              V    LIKGLC   R  +A  + F ++   G  P+V +Y+ LI GLC    +  AL 
Sbjct: 127 VQNVTLNQLIKGLCDGKRTDDAMDMVFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALE 186

Query: 234 LFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           L   M A+G    G  C PN V+Y+TIIDG  KEG VDKA  LF +M  +   PDVVTY+
Sbjct: 187 LLLHMTADG----GYNCSPNVVSYSTIIDGFFKEGEVDKAYFLFDEMIGQGFPPDVVTYS 242

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI G C A   N+A  +L  M D+GV P+  T+N+++   C  G+++EA RLL+ M   
Sbjct: 243 SLIDGLCKAQAMNKAEAILQHMFDKGVMPNTRTYNIMIRGYCSLGQLEEAVRLLKKMSGS 302

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           G+ P+  T+  L+  +C  GR   A+ +F SM   G K
Sbjct: 303 GLQPDVVTYILLIQYYCKIGRCAEARSVFDSMVRKGQK 340



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/328 (27%), Positives = 158/328 (48%), Gaps = 41/328 (12%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    +FN+L    AK    D  ++ F  +   GL PD+ +Y+ +I+  CK+GRV     
Sbjct: 375 PFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVY 434

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCA---------------------------------- 189
              +++    +P+ ++FTSLI GLC+                                  
Sbjct: 435 HFNQMVSEGLSPNIISFTSLIHGLCSIGEWKKVEELAFEMINRGIHPDAIFMNTIMDNLC 494

Query: 190 -ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E R++EA   F  +   G KPNV++Y+TLI+G C  G    ++  F+ M +      + 
Sbjct: 495 KEGRVVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVS------IG 548

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +P++ TY  +++G  K G V+ A  L+ +M  K++    +T N ++HG   A     A 
Sbjct: 549 LRPDSWTYNALLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAAR 608

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L ++M+D+G Q  + T+N ++  LC+N  +DEA R+ E +  +    +  TF+ +++  
Sbjct: 609 ELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVWTFNIVINAL 668

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GR++ AK LF +M   G    V +Y
Sbjct: 669 LKVGRIDEAKSLFSAMVLRGPVPHVITY 696



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 152/308 (49%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+     P       LL G   K    D V  L   +   G+  +   +NIL
Sbjct: 326 EARSVFDSMVRKGQKPNSTIYHILLHGYATKGALID-VRDLLDLMIRDGIPFEHRAFNIL 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K G V         + ++   PD V+++++I  LC   R+ +A   F ++ + G 
Sbjct: 385 ICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVIHILCKIGRVEDAVYHFNQMVSEGL 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+I++++LI+GLC  G       L  EM N          P+ +   TI+D LCKEG 
Sbjct: 445 SPNIISFTSLIHGLCSIGEWKKVEELAFEMINRG------IHPDAIFMNTIMDNLCKEGR 498

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A++ F  +    + P+VV+YN+LI G+C+    +E+      M+  G++PD  T+N 
Sbjct: 499 VVEAQDFFDMVIHIGVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNA 558

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++   KNG++++A  L   M  + V     T + ++ G    GR+  A+EL++ M   G
Sbjct: 559 LLNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRG 618

Query: 389 CKHTVFSY 396
            +  + +Y
Sbjct: 619 TQLRIETY 626



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 126/277 (45%), Gaps = 7/277 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   FD ++++    P + S+N L          D  +  F R+ S GL PD +TYN L
Sbjct: 501 EAQDFFDMVIHI-GVKPNVVSYNTLIDGYCFVGKMDESIKQFDRMVSIGLRPDSWTYNAL 559

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N + K GRV     +   + R      A+    ++ GL    RI+ A  L+ K+   G 
Sbjct: 560 LNGYFKNGRVEDALALYREMFRKDVKFCAITSNIILHGLFQAGRIVAARELYMKMVDRGT 619

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +  + TY+T++ GLC       AL +FE++ +   +  V       T+  +I+ L K G 
Sbjct: 620 QLRIETYNTVLGGLCENSCVDEALRMFEDLRSKEFELDVW------TFNIVINALLKVGR 673

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+AK LF  M  +   P V+TY+ +I          E++ L + M   G   D    NV
Sbjct: 674 IDEAKSLFSAMVLRGPVPHVITYSLMIKSRIEEGLLEESDDLFLSMEKNGCAADSHMLNV 733

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           I+  L + G +  A   L  +  +  +   ST + L+
Sbjct: 734 IIRRLLEKGDVRRAGTYLTKIDEKNFSVEASTAALLI 770


>gi|334183626|ref|NP_176639.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122242336|sp|Q0WKZ3.1|PP105_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g64580
 gi|110741328|dbj|BAF02214.1| hypothetical protein [Arabidopsis thaliana]
 gi|332196134|gb|AEE34255.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 523

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/333 (33%), Positives = 179/333 (53%), Gaps = 11/333 (3%)

Query: 64  ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY 123
           AS     +ER ++    ++  I  ++AF +F  ML  RP  P +  F  +   +AK   +
Sbjct: 41  ASHHHHYRERLRN----ELHCIKFDDAFSLFCEMLQSRP-IPSIVDFTRVLTVIAKMNKF 95

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D V+ L+ ++ + G+  DLY++ ILI+CFC+  R+S    +LG++++  F P  V   SL
Sbjct: 96  DIVIYLYHKMENLGISHDLYSFTILIHCFCRCSRLSLALALLGKMMKLGFRPSIVTLGSL 155

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           + G C  +R  EA +L   +  FG  PNV+ Y+T+INGLC+      AL +F  M     
Sbjct: 156 LNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNRDLNNALEVFYCME---- 211

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           K G+  + + VTY T+I GL   G    A  L   M  + I+P+V+ + +LI  F    +
Sbjct: 212 KKGI--RADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTALIDTFVKEGN 269

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  L  EM+ + V P+V T+N +++  C +G + +A  + +LM+ +G  P+  T++T
Sbjct: 270 LLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKGCFPDVVTYNT 329

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ GFC + RV    +LF  M   G     F+Y
Sbjct: 330 LITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTY 362



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L K +  +  L +F  +   G+  D  TYN LI+     GR +    +
Sbjct: 182 PNVVIYNTVINGLCKNRDLNNALEVFYCMEKKGIRADAVTYNTLISGLSNSGRWTDAARL 241

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++    P+ + FT+LI     E  ++EA  L+ ++      PNV TY++LING C 
Sbjct: 242 LRDMVKRKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCI 301

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F+ M +        C P+ VTY T+I G CK   V+   +LF +M  + +
Sbjct: 302 HGCLGDAKYMFDLMVSKG------CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGL 355

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D  TYN+LIHG+C A   N A  +   M+D GV PD+VT+N+++D LC NGK+++A  
Sbjct: 356 VGDAFTYNTLIHGYCQAGKLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALV 415

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++E +    ++ +  T++ ++ G C T ++  A  LF S+   G K    +Y
Sbjct: 416 MVEDLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAY 467



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F Y +  +       ++N L   L+ +  +     L + +    + P++  +  
Sbjct: 201 NNALEVF-YCMEKKGIRADAVTYNTLISGLSNSGRWTDAARLLRDMVKRKIDPNVIFFTA 259

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G +     +   ++R    P+   + SLI G C    + +A  +F  + + G
Sbjct: 260 LIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGDAKYMFDLMVSKG 319

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+TLI G C++      + LF EM    G  G     +  TY T+I G C+ G
Sbjct: 320 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTY-QGLVG-----DAFTYNTLIHGYCQAG 373

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+++F +M D  ++PD+VTYN L+   C      +A  ++ ++    +  D++T+N
Sbjct: 374 KLNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN 433

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  LC+  K+ EA  L   +  +GV P+   + T++ G C  G    A +L   M+  
Sbjct: 434 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKED 493

Query: 388 G 388
           G
Sbjct: 494 G 494



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 135/272 (49%), Gaps = 13/272 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGR 157
           R   P +  F  L     K  +     +L+K +    + P+++TYN LIN FC    +G 
Sbjct: 248 RKIDPNVIFFTALIDTFVKEGNLLEARNLYKEMIRRSVVPNVFTYNSLINGFCIHGCLGD 307

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             + F ++  + + CF PD V + +LI G C   R+ +   LF ++   G   +  TY+T
Sbjct: 308 AKYMFDLM--VSKGCF-PDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNT 364

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G   VA  +F  M +     GV   P+ VTY  ++D LC  G ++KA  +  
Sbjct: 365 LIHGYCQAGKLNVAQKVFNRMVDC----GV--SPDIVTYNILLDCLCNNGKIEKALVMVE 418

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   ++ D++TYN +I G C  +   EA CL   +  +GV+PD + +  ++  LC+ G
Sbjct: 419 DLQKSEMDVDIITYNIIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKG 478

Query: 338 KMDEASRLLELMILRGVNPNTSTF-STLMDGF 368
              EA +L   M   G  P+   +  TL D +
Sbjct: 479 LQREADKLCRRMKEDGFMPSERIYDETLRDHY 510


>gi|326499175|dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 101/304 (33%), Positives = 163/304 (53%), Gaps = 8/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+  +      P + SFN++   + K       L L +R++  G  PD  T+NI
Sbjct: 215 QDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFGCSPDTVTHNI 274

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L+N  C+   VS G  VL R+ R     P+ V +TS+I G C   R+ +A A++  + A 
Sbjct: 275 LVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAV 334

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNV+TY+ LING  + G+   A+ ++++M          C P+ VT++++IDG C+ 
Sbjct: 335 GTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRR------CLPDVVTFSSLIDGYCRC 388

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A +++ +M   +I P+  T+  +IH FC  N   EA   L +M M   + P    
Sbjct: 389 GQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKMNMRTDIAPQAFI 448

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK GK+DEA+ +L  M  +G  P+  T++ L+ G C+ GR+  A   F  M 
Sbjct: 449 YNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMV 508

Query: 386 SMGC 389
             GC
Sbjct: 509 ETGC 512



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 152/299 (50%), Gaps = 22/299 (7%)

Query: 114 FGCLAKTKHYDTVLSLF----KRLNSTGLF----------PDLYTYNILINCFCKMGRVS 159
           FGC  +   Y+ ++ LF    +  ++  LF          PD++++N++I   CK+G V 
Sbjct: 192 FGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQ 251

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTL 218
               ++ R+     +PD V    L+ GLC    + +   +  +L+  G C PNV+TY+++
Sbjct: 252 KALELVERMDEFGCSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDGVCMPNVVTYTSV 311

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+G C+ G    A+ ++ +M        V   PN VTY  +I+G  K G +  A  ++ Q
Sbjct: 312 ISGYCKAGRMEDAMAVYNDMV------AVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQ 365

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  +   PDVVT++SLI G+C     ++A  +  EM    +QP+  TF +I+   CK  +
Sbjct: 366 MILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNR 425

Query: 339 MDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             EA   L+ M +R  + P    ++ ++D  C  G+V+ A  + + ME  GC+   ++Y
Sbjct: 426 SGEALHFLKKMNMRTDIAPQAFIYNPVIDVLCKGGKVDEANMILIEMEEKGCRPDKYTY 484



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 143/297 (48%), Gaps = 6/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M +     P     + L G  A     D   +L  + +  G   + Y YN L
Sbjct: 145 DALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAAALLSKASQFGCSIEAYAYNKL 204

Query: 149 INCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++ F   GRV     +  G I    ++PD  +F  +IKG+C    + +A  L  ++  FG
Sbjct: 205 MDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKALELVERMDEFG 264

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+ +T++ L+NGLCR         +   +         VC PN VTYT++I G CK G
Sbjct: 265 CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQRDG-----VCMPNVVTYTSVISGYCKAG 319

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  ++  M     +P+VVTYN LI+G+  A +   A  +  +M+ +   PDVVTF+
Sbjct: 320 RMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMGSAVAVYQQMILRRCLPDVVTFS 379

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++D  C+ G++D+A ++   M    + PN  TF  ++  FC   R   A      M
Sbjct: 380 SLIDGYCRCGQLDDAMKIWTEMAQYHIQPNAHTFCIIIHTFCKQNRSGEALHFLKKM 436



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 149/284 (52%), Gaps = 9/284 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  +   + ++  +   L LF ++ + +G FP+    + L       G +    
Sbjct: 124 PPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPNARFLSFLSGSCAAAGLLDAAA 183

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLING 221
            +L +  +   + +A A+  L+       R+ +A ALF      G   P+V +++ +I G
Sbjct: 184 ALLSKASQFGCSIEAYAYNKLMDLFIGHGRVQDAVALFEGWIQGGVYSPDVWSFNVVIKG 243

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-K 280
           +C+ G    AL L E M     +FG  C P+TVT+  +++GLC+   V K +E+  ++ +
Sbjct: 244 VCKVGDVQKALELVERM----DEFG--CSPDTVTHNILVNGLCRAKEVSKGREVLRRLQR 297

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D    P+VVTY S+I G+C A    +A  +  +M+  G  P+VVT+NV+++   K G M 
Sbjct: 298 DGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPNVVTYNVLINGYGKAGNMG 357

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            A  + + MILR   P+  TFS+L+DG+C  G+++ A +++  M
Sbjct: 358 SAVAVYQQMILRRCLPDVVTFSSLIDGYCRCGQLDDAMKIWTEM 401



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 62/244 (25%), Positives = 109/244 (44%), Gaps = 38/244 (15%)

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG---- 243
           CA S +   +AL +        P+  +Y  +I+ +C++G    AL LF++M + +G    
Sbjct: 103 CASSTLHLFSALHSPHSQLAMPPSAHSYRYVISLMCQSGRHTDALQLFDQMTDQSGYFPN 162

Query: 244 ----------------------------KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
                                       +FG  C      Y  ++D     G V  A  L
Sbjct: 163 ARFLSFLSGSCAAAGLLDAAAALLSKASQFG--CSIEAYAYNKLMDLFIGHGRVQDAVAL 220

Query: 276 FLQMKDKNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTFNVIMDEL 333
           F       + +PDV ++N +I G C   D  +A   L+E MD+ G  PD VT N++++ L
Sbjct: 221 FEGWIQGGVYSPDVWSFNVVIKGVCKVGDVQKA-LELVERMDEFGCSPDTVTHNILVNGL 279

Query: 334 CKNGKMDEASRLLELMILRGV-NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           C+  ++ +   +L  +   GV  PN  T+++++ G+C  GR+  A  ++  M ++G    
Sbjct: 280 CRAKEVSKGREVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDAMAVYNDMVAVGTSPN 339

Query: 393 VFSY 396
           V +Y
Sbjct: 340 VVTY 343


>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  184 bits (467), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN LIN FCKM R+     VL R+    F+PD V +  +I  LC+  ++  A  +
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 211

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +L +  C+P VITY+ LI      G    AL L +EM +         KP+  TY TI
Sbjct: 212 LDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRG------LKPDMFTYNTI 265

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G+CKEG VD+A E+   ++ K   PDV++YN L+        W E   L+ +M  +  
Sbjct: 266 IRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 325

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT+++++  LC++GK++EA  LL+LM  +G+ P+  ++  L+  FC  GR++ A E
Sbjct: 326 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 385

Query: 380 LFVSMESMGCKHTVFSY 396
              +M S GC   + +Y
Sbjct: 386 FLETMISDGCLPDIVNY 402



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M +   SP  +T +N++ G L      D  L +  +L S    P + TY I
Sbjct: 171 DDATRVLDRMRSKDFSPDTVT-YNIMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTI 229

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI      G V     +L  +L     PD   + ++I+G+C E  +  A  +   L+  G
Sbjct: 230 LIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKG 289

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+VI+Y+ L+  L   G       L  +M      F   C PN VTY+ +I  LC++G
Sbjct: 290 CEPDVISYNILLRALLNQGKWEEGEKLMTKM------FSEKCDPNVVTYSILITTLCRDG 343

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L   MK+K + PD  +Y+ LI  FC     + A   L  M+  G  PD+V +N
Sbjct: 344 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 403

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCKNGK D+A  +   +   G +PN+S+++T+      +G    A  + + M S 
Sbjct: 404 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSN 463

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 464 GIDPDEITY 472



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 153/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D ML+ R   P + ++N +   + K    D    + + L   G  PD+ +YNI
Sbjct: 241 DEALKLLDEMLS-RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNI 299

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+      G+   G  ++ ++      P+ V ++ LI  LC + +I EA  L   +K  G
Sbjct: 300 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 359

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  LI   CR G   VA+   E M +        C P+ V Y T++  LCK G
Sbjct: 360 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNG 413

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A E+F ++ +   +P+  +YN++      + D   A  +++EM+  G+ PD +T+N
Sbjct: 414 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYN 473

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+ G +D+A  LL  M     +P+  T++ ++ GFC   R+  A ++  SM   
Sbjct: 474 SMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGN 533

Query: 388 GCKHTVFSY 396
           GC+    +Y
Sbjct: 534 GCRPNETTY 542



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 144/284 (50%), Gaps = 8/284 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++   P + S+N+L   L     ++    L  ++ S    P++ TY+ILI   C+ G+
Sbjct: 285 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 344

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  +     TPDA ++  LI   C E R+  A      + + GC P+++ Y+T
Sbjct: 345 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 404

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++  LC+ G    AL +F       GK G V C PN+ +Y T+   L   G   +A  + 
Sbjct: 405 VLATLCKNGKADQALEIF-------GKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMI 457

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           L+M    I+PD +TYNS+I   C     ++A  LL++M      P VVT+N+++   CK 
Sbjct: 458 LEMVSNGIDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKA 517

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            ++++A  +L+ M+  G  PN +T++ L++G    G    A EL
Sbjct: 518 HRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 561



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 63/209 (30%), Positives = 109/209 (52%), Gaps = 7/209 (3%)

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C     +E+  L   +   G  P+VI  + LI G     +   A+ + E +     KFG 
Sbjct: 96  CRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNVPKAVRVMEILE----KFG- 150

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             +P+   Y  +I+G CK   +D A  +  +M+ K+ +PD VTYN +I   C     + A
Sbjct: 151 --QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLA 208

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L +++    QP V+T+ ++++     G +DEA +LL+ M+ RG+ P+  T++T++ G
Sbjct: 209 LKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEMLSRGLKPDMFTYNTIIRG 268

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  G V+ A E+  ++E  GC+  V SY
Sbjct: 269 MCKEGMVDRAFEMIRNLELKGCEPDVISY 297



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 2/140 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +S+N +F  L  +      L +   + S G+ PD  TYN +I+C C+ G V   F +
Sbjct: 432 PNSSSYNTMFSALWSSGDKIRALHMILEMVSNGIDPDEITYNSMISCLCREGMVDKAFEL 491

Query: 165 LGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L   +RSC F P  V +  ++ G C   RI +A  +   +   GC+PN  TY+ LI G+ 
Sbjct: 492 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGIG 550

Query: 224 RTGHTIVALNLFEEMANGNG 243
             G+   A+ L  ++   N 
Sbjct: 551 FAGYRAEAMELANDLVRINA 570


>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
          Length = 514

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 100/304 (32%), Positives = 172/304 (56%), Gaps = 10/304 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGL--FPDLYT 144
           ++AF +F  M    P P  +  FN +   +AK + YD V++L+KR+ N+ G+   PDLYT
Sbjct: 67  DDAFHLFVLMAYSYPLPS-IVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYT 125

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            NIL+NCFC+  + S     LG++++    PD V  +SL+ G C  + I +A  +  +++
Sbjct: 126 CNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQME 185

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G K +V+  + LI+ LC+    + AL + + M +          PN VTY+++I GLC
Sbjct: 186 KMGIKRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRG------ISPNVVTYSSLITGLC 239

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G +  A+    +M  K INP+V+T+++LI  +      ++ + +   M+   + P+V 
Sbjct: 240 KSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVF 299

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ ++  LC + ++DEA ++L+LMI +G  PN  T+STL +GF  + RV+   +L   M
Sbjct: 300 TYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDM 359

Query: 385 ESMG 388
              G
Sbjct: 360 PQRG 363



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 6/274 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           +L   L K +     L + KR+   G+ P++ TY+ LI   CK GR++     L  +   
Sbjct: 198 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 257

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
              P+ + F++LI       ++ +  +++  +      PNV TYS+LI GLC       A
Sbjct: 258 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 317

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           + + + M +        C PN VTY+T+ +G  K   VD   +L   M  + +  + V+ 
Sbjct: 318 IKMLDLMISKG------CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 371

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N+LI G+  A   + A  +   M   G+ P++ ++N+++  L  NG++++A    E M  
Sbjct: 372 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQK 431

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
              + +  T++ ++ G C    V  A +LF  ++
Sbjct: 432 TRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 465



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +++ L   L K+            ++S  + P++ T++ LI+ + K G++S 
Sbjct: 222 RGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSK 281

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +++    P+   ++SLI GLC  +R+ EA  +   + + GC PNV+TYSTL N
Sbjct: 282 VDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLAN 341

Query: 221 GLCRTGHTIVALNLFEEMANGN-------------------------GKFGVVCK----P 251
           G  ++      + L ++M                             G FG +      P
Sbjct: 342 GFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIP 401

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  +Y  ++ GL   G V+KA   F  M+    + D++TY  +IHG C A    EA  L 
Sbjct: 402 NIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLF 461

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            ++  + V+PD   + +++ EL + G   EA  L
Sbjct: 462 YKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 495



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 127/299 (42%), Gaps = 71/299 (23%)

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R     F+   + +  +++      +  +A  LF  +      P+++ ++ ++  + +  
Sbjct: 40  RFWVRAFSGTTIDYREVLRSGLHNIKFDDAFHLFVLMAYSYPLPSIVEFNKVLTAIAKMQ 99

Query: 227 HTIVALNLFEEMANGNG----------------------------------KFGVVCKPN 252
              V +NL++ + N  G                                  K G+  +P+
Sbjct: 100 MYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGI--EPD 157

Query: 253 TVTYTTIIDG-----------------------------------LCKEGFVDKAKELFL 277
            VT +++++G                                   LCK   V  A E+  
Sbjct: 158 IVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDTLCKNRLVVPALEVLK 217

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +MKD+ I+P+VVTY+SLI G C +    +A   L EM  + + P+V+TF+ ++D   K G
Sbjct: 218 RMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRG 277

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+ +   + ++MI   ++PN  T+S+L+ G C+  RV+ A ++   M S GC   V +Y
Sbjct: 278 KLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTY 336



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 7/218 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  M+ M   P   T  +L++G L      D  + +   + S G  P++ TY+ L N F
Sbjct: 285 VYKMMIQMSIDPNVFTYSSLIYG-LCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGF 343

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K  RV  G  +L  + +     + V+  +LIKG     +I  A  +F  + + G  PN+
Sbjct: 344 FKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNI 403

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            +Y+ ++ GL   G    AL+ FE M        +      +TYT +I G+CK   V +A
Sbjct: 404 RSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDI------ITYTIMIHGMCKACMVKEA 457

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            +LF ++K K + PD   Y  +I     A    EA+ L
Sbjct: 458 YDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 495


>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
 gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
          Length = 457

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 157/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L   L + + ++   S+F+ + + G  P++++Y+ILI   C+  +V     +
Sbjct: 50  PNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAEL 109

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+ V + SL+ GLC   ++ EA  LF+++   GC P+ + Y+ LI+G  +
Sbjct: 110 LNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSK 169

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LFEEM          C P   TY +++ G  ++G   + + LF  M  +  
Sbjct: 170 KGDMGEAYRLFEEMLEKG------CIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGC 223

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ T+N+L+ GFC   D  EA+ L +EM   G  PDVV++N ++  +C  GK  EA R
Sbjct: 224 VPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEAQR 283

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  MI  GV P+  +++ L+DG+  +G ++HA +LF  +   G +   FSY
Sbjct: 284 LLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSY 335



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/253 (36%), Positives = 132/253 (52%), Gaps = 6/253 (2%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           +YN L+    K GR  H +     +L +   P+   +  L++ LC   R  EA ++F  +
Sbjct: 19  SYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGM 78

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            A GC PNV +YS LI GLCR      A  L  EM +G  +      PN VTY +++ GL
Sbjct: 79  AAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQ------PNVVTYGSLLSGL 132

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G + +A +LF +M  +   PD V YN LI GF    D  EA  L  EM+++G  P V
Sbjct: 133 CKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTV 192

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+N ++    + G+      L + M+ +G  PN  TF+ L+DGFC  G +  A  LF+ 
Sbjct: 193 FTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLE 252

Query: 384 MESMGCKHTVFSY 396
           M S+GC   V SY
Sbjct: 253 MRSLGCPPDVVSY 265



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 152/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M++    P  +T  +LL G L K       + LF R+   G  PD   YN+
Sbjct: 104 DEAAELLNEMIDGGHQPNVVTYGSLLSG-LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNV 162

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K G +   + +   +L     P    + SL+ G   +       +LF  +   G
Sbjct: 163 LIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQG 222

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ L++G C+ G  + A  LF EM +      + C P+ V+Y T+I G+C +G
Sbjct: 223 CVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRS------LGCPPDVVSYNTLIRGMCSKG 276

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A+ L  +M    + PD+V+YN LI G+  +   + A  L  E+   G++PD  +++
Sbjct: 277 KPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGLEPDAFSYS 336

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+D LC+ GK+  A  + + MI  G  P+ +    L+ G C   R+  + ELF +M   
Sbjct: 337 TIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVKF 396

Query: 388 GCKHTVFSY 396
            C   +  Y
Sbjct: 397 ECVPLIPEY 405



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 141/301 (46%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F  M+  R  PP    +N+L    +K         LF+ +   G  P ++TYN 
Sbjct: 139 KEAVDLFSRMV-YRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNS 197

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ F + G       +   +LR    P+   F +L+ G C    ++EA  LF ++++ G
Sbjct: 198 LLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLG 257

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V++Y+TLI G+C  G    A  L  EM     + GV   P+ V+Y  +IDG  K G
Sbjct: 258 CPPDVVSYNTLIRGMCSKGKPHEAQRLLREMI----RSGV--GPDIVSYNILIDGYSKSG 311

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A +LF ++    + PD  +Y+++I   C A     A  +  +M+  G  PD     
Sbjct: 312 ALDHAIKLFYEIPKSGLEPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVI 371

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+  ++ E+  L + M+     P    ++ LM   C   R +   E+F  +   
Sbjct: 372 PLVIGLCRGERLTESCELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTER 431

Query: 388 G 388
           G
Sbjct: 432 G 432



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 108/219 (49%), Gaps = 6/219 (2%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           +++  L++ L    R       +  + A GC PN  TY  L+  LC+      A ++F  
Sbjct: 18  LSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRG 77

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           MA         C PN  +Y+ +I GLC+   VD+A EL  +M D    P+VVTY SL+ G
Sbjct: 78  MAAQG------CSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSG 131

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C      EA  L   M+ +G  PD V +NV++D   K G M EA RL E M+ +G  P 
Sbjct: 132 LCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPT 191

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T+++L+ GF   G     + LF  M   GC   +F++
Sbjct: 192 VFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNIFTF 230



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 146/290 (50%), Gaps = 12/290 (4%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           S +GD+      EA+ +F+ ML  +   P + ++N L    ++   +  V SLFK +   
Sbjct: 168 SKKGDM-----GEAYRLFEEMLE-KGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQ 221

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  P+++T+N L++ FCKMG +     +   +      PD V++ +LI+G+C++ +  EA
Sbjct: 222 GCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHEA 281

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  ++   G  P++++Y+ LI+G  ++G    A+ LF E+     K G+  +P+  +Y
Sbjct: 282 QRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIP----KSGL--EPDAFSY 335

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           +TIID LC+ G V  A  +F  M      PD      L+ G C      E+  L   M+ 
Sbjct: 336 STIIDCLCRAGKVGAAFVVFKDMIANGSAPDAAVVIPLVIGLCRGERLTESCELFQAMVK 395

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
               P +  +N++M +LCK  + D+   +   +  RG +P+      +++
Sbjct: 396 FECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILE 445



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 70/138 (50%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
            T++Y  +++ L K G  D     +  M      P+  TY  L+   C A  + EA  + 
Sbjct: 16  GTLSYNYLLEVLAKSGRCDHVYGTYNDMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVF 75

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M  QG  P+V ++++++  LC+  K+DEA+ LL  MI  G  PN  T+ +L+ G C  
Sbjct: 76  RGMAAQGCSPNVFSYSILIAGLCRGQKVDEAAELLNEMIDGGHQPNVVTYGSLLSGLCKM 135

Query: 372 GRVNHAKELFVSMESMGC 389
           G++  A +LF  M   GC
Sbjct: 136 GKLKEAVDLFSRMVYRGC 153


>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39710-like [Glycine max]
          Length = 757

 Score =  184 bits (466), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 162/284 (57%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K K     ++L + +   G+  +L +YN +IN  C  GR+S    +
Sbjct: 240 PNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLISYNSVINGLCGKGRMSEVGEL 299

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +      PD V + +L+ G C E  + +   L +++   G  PNV+TY+TLIN +C+
Sbjct: 300 VEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCK 359

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+ +F++M           +PN  TYTT+IDG C++G +++A ++  +M     
Sbjct: 360 AGNLSRAVEIFDQMRVRG------LRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGF 413

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P VVTYN+L+HG+C+     EA  +L  M+++G+ PDVV+++ ++   C+  ++ +A +
Sbjct: 414 SPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQ 473

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + E M+ +GV P+T T+S+L+ G CL  ++  A +LF  M   G
Sbjct: 474 MKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRG 517



 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 95/306 (31%), Positives = 164/306 (53%), Gaps = 11/306 (3%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKT-----KHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           ++ N     P + S+N +   L +      + YD    +F+ +   G+ P++YTYN++I 
Sbjct: 156 HLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERVFRDMVRNGVSPNVYTYNVIIR 215

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
                G +  G   + ++ +   +P+ V + +LI   C + ++ EA AL   +   G   
Sbjct: 216 GVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAA 275

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N+I+Y+++INGLC  G       L EEM    GK G+V  P+ VTY T+++G CKEG + 
Sbjct: 276 NLISYNSVINGLCGKGRMSEVGELVEEM---RGK-GLV--PDEVTYNTLVNGFCKEGNLH 329

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           +   L  +M  K ++P+VVTY +LI+  C A + + A  +  +M  +G++P+  T+  ++
Sbjct: 330 QGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLI 389

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           D  C+ G M+EA ++L  MI+ G +P+  T++ L+ G+C  GRV  A  +   M   G  
Sbjct: 390 DGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449

Query: 391 HTVFSY 396
             V SY
Sbjct: 450 PDVVSY 455



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N++   +      +  L   +++   G+ P++ TYN LI+  CK  +V     +
Sbjct: 205 PNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCKKKKVKEAMAL 264

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       + +++ S+I GLC + R+ E   L  +++  G  P+ +TY+TL+NG C+
Sbjct: 265 LRAMAVGGVAANLISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCK 324

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+    L L  EM  G G       PN VTYTT+I+ +CK G + +A E+F QM+ + +
Sbjct: 325 EGNLHQGLVLLSEMV-GKG-----LSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGL 378

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  TY +LI GFC     NEA  +L EM+  G  P VVT+N ++   C  G++ EA  
Sbjct: 379 RPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVG 438

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L  M+ RG+ P+  ++ST++ GFC    +  A ++   M   G      +Y
Sbjct: 439 ILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTY 490



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 149/282 (52%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S+N +   L        V  L + +   GL PD  TYN L+N FCK G +  G V+L 
Sbjct: 277 LISYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLS 336

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++    +P+ V +T+LI  +C    +  A  +F +++  G +PN  TY+TLI+G C+ G
Sbjct: 337 EMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKG 396

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  +  EM            P+ VTY  ++ G C  G V +A  +   M ++ + P
Sbjct: 397 LMNEAYKVLSEMIVSG------FSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPP 450

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVV+Y+++I GFC   +  +A  +  EM+++GV PD VT++ ++  LC   K+ EA  L 
Sbjct: 451 DVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGLCLQQKLVEAFDLF 510

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+ RG+ P+  T+++L++ +C+ G ++ A  L   M   G
Sbjct: 511 REMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRG 552



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 158/292 (54%), Gaps = 11/292 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH-----GFVV 164
           F+L+   L++       L+L    N  G  P + +YN +++   +    +H        V
Sbjct: 135 FDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDDAERV 194

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R+  +P+   +  +I+G+ ++  + +      K++  G  PNV+TY+TLI+  C+
Sbjct: 195 FRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLIDASCK 254

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L   MA G    GV    N ++Y ++I+GLC +G + +  EL  +M+ K +
Sbjct: 255 KKKVKEAMALLRAMAVG----GVAA--NLISYNSVINGLCGKGRMSEVGELVEEMRGKGL 308

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTYN+L++GFC   + ++   LL EM+ +G+ P+VVT+  +++ +CK G +  A  
Sbjct: 309 VPDEVTYNTLVNGFCKEGNLHQGLVLLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVE 368

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M +RG+ PN  T++TL+DGFC  G +N A ++   M   G   +V +Y
Sbjct: 369 IFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKVLSEMIVSGFSPSVVTY 420



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 157/295 (53%), Gaps = 21/295 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L  C+ K  +    + +F ++   GL P+  TY  LI+ FC+ G ++  + V
Sbjct: 345 PNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFCQKGLMNEAYKV 404

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ S F+P  V + +L+ G C   R+ EA  +   +   G  P+V++YST+I G CR
Sbjct: 405 LSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFCR 464

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + EEM       GV+  P+TVTY+++I GLC +  + +A +LF +M  + +
Sbjct: 465 ERELGKAFQMKEEMVEK----GVL--PDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGL 518

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY SLI+ +C   + ++A  L  EM+ +G  PD VT++V+++ L K  +   A R
Sbjct: 519 PPDEVTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVAKR 578

Query: 345 LLELMILRGVNPNTSTFSTLMD---------------GFCLTGRVNHAKELFVSM 384
           LL  +      P+  T++TL++               GFC+ G +N A  +F +M
Sbjct: 579 LLLKLFYEESVPDDVTYNTLIENCSNNEFKSVEGLVKGFCMKGLMNEADRVFKTM 633



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/293 (26%), Positives = 130/293 (44%), Gaps = 23/293 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I   M+  R  PP + S++ +     + +       + + +   G+ PD  TY+ 
Sbjct: 434 QEAVGILRGMVE-RGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSS 492

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C   ++   F +   ++R    PD V +TSLI   C +  + +A  L  ++   G
Sbjct: 493 LIQGLCLQQKLVEAFDLFREMMRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRG 552

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID------ 261
             P+ +TYS LINGL +   T VA  L  ++      F     P+ VTY T+I+      
Sbjct: 553 FLPDNVTYSVLINGLNKKARTKVAKRLLLKL------FYEESVPDDVTYNTLIENCSNNE 606

Query: 262 ---------GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
                    G C +G +++A  +F  M  +N  P+   YN +IHG     + ++A  L +
Sbjct: 607 FKSVEGLVKGFCMKGLMNEADRVFKTMLQRNHKPNAAIYNLMIHGHSRGGNVHKAYNLYM 666

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           E+         V    ++  L + G  DE SRLL+  ILR    N +  + ++
Sbjct: 667 ELEHSSFACHTVAVIALVKALAREGMNDELSRLLQ-NILRSCRLNDAKVAKVL 718



 Score = 72.0 bits (175), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN-----DWNE 306
           ++  +  ++  L + GFV KA  L          P V++YN+++      +     D+++
Sbjct: 131 SSAVFDLVVKSLSRLGFVPKALTLLHLANRHGFAPTVLSYNAVLDALLRRSSSNHRDYDD 190

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +  +M+  GV P+V T+NVI+  +   G +++    +  M   G++PN  T++TL+D
Sbjct: 191 AERVFRDMVRNGVSPNVYTYNVIIRGVVSQGDLEKGLGFMRKMEKEGISPNVVTYNTLID 250

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             C   +V  A  L  +M   G    + SY
Sbjct: 251 ASCKKKKVKEAMALLRAMAVGGVAANLISY 280


>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
          Length = 602

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN LIN FCKM R+     VL R+    F+PD V +  +I  LC+  ++  A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +L +  C+P VITY+ LI      G    AL L +EM +         KP+  TY TI
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG------LKPDMFTYNTI 269

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G+CKEG VD+A E+   ++ K   PDV++YN L+        W E   L+ +M  +  
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT+++++  LC++GK++EA  LL+LM  +G+ P+  ++  L+  FC  GR++ A E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 380 LFVSMESMGCKHTVFSY 396
              +M S GC   + +Y
Sbjct: 390 FLETMISDGCLPDIVNY 406



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 88/284 (30%), Positives = 145/284 (51%), Gaps = 8/284 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++ S P + S+N+L   L     ++    L  ++ S    P++ TY+ILI   C+ G+
Sbjct: 289 LELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  +     TPDA ++  LI   C E R+  A      + + GC P+++ Y+T
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++  LC+ G    AL +F       GK G V C PN+ +Y T+   L   G   +A  + 
Sbjct: 409 VLATLCKNGKADQALEIF-------GKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMI 461

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           L+M    I+PD +TYNS+I   C     +EA  LL++M      P VVT+N+++   CK 
Sbjct: 462 LEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKA 521

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            ++++A  +LE M+  G  PN +T++ L++G    G    A EL
Sbjct: 522 HRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D ML+ R   P + ++N +   + K    D    + + L   G  PD+ +YNI
Sbjct: 245 DEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNI 303

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+      G+   G  ++ ++      P+ V ++ LI  LC + +I EA  L   +K  G
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  LI   CR G   VA+   E M +        C P+ V Y T++  LCK G
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNG 417

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A E+F ++ +   +P+  +YN++      + D   A  +++EMM  G+ PD +T+N
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+ G +DEA  LL  M     +P+  T++ ++ GFC   R+  A  +  SM   
Sbjct: 478 SMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537

Query: 388 GCKHTVFSY 396
           GC+    +Y
Sbjct: 538 GCRPNETTY 546



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    D    +  R+ S    PD  TYNI+I   C  G++     V
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L     P  + +T LI+    E  + EA  L  ++ + G KP++ TY+T+I G+C+
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCK 275

Query: 225 TGHT------------------IVALNLFEEMANGNGK-----------FGVVCKPNTVT 255
            G                    +++ N+        GK           F   C PN VT
Sbjct: 276 EGMVDRAFEMVRNLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVT 335

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+ +I  LC++G +++A  L   MK+K + PD  +Y+ LI  FC     + A   L  M+
Sbjct: 336 YSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMI 395

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G  PD+V +N ++  LCKNGK D+A  +   +   G +PN+S+++T+      +G   
Sbjct: 396 SDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKI 455

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  + + M S G      +Y
Sbjct: 456 RALHMILEMMSNGIDPDEITY 476



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +S+N +F  L  +      L +   + S G+ PD  TYN +I+C C+ G V   F +
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495

Query: 165 LGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L   +RSC F P  V +  ++ G C   RI +A  +   +   GC+PN  TY+ LI G+ 
Sbjct: 496 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIG 554

Query: 224 RTGHTIVALNLFEEMA 239
             G+   A+ L  ++ 
Sbjct: 555 FAGYRAEAMELANDLV 570


>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g04760, chloroplastic; Flags: Precursor
 gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
 gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
 gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
 gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 602

 Score =  184 bits (466), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 93/257 (36%), Positives = 144/257 (56%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN LIN FCKM R+     VL R+    F+PD V +  +I  LC+  ++  A  +
Sbjct: 156 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKV 215

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +L +  C+P VITY+ LI      G    AL L +EM +         KP+  TY TI
Sbjct: 216 LNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRG------LKPDMFTYNTI 269

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G+CKEG VD+A E+   ++ K   PDV++YN L+        W E   L+ +M  +  
Sbjct: 270 IRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKC 329

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT+++++  LC++GK++EA  LL+LM  +G+ P+  ++  L+  FC  GR++ A E
Sbjct: 330 DPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIE 389

Query: 380 LFVSMESMGCKHTVFSY 396
              +M S GC   + +Y
Sbjct: 390 FLETMISDGCLPDIVNY 406



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 152/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D ML+ R   P + ++N +   + K    D    + + L   G  PD+ +YNI
Sbjct: 245 DEALKLMDEMLS-RGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNI 303

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+      G+   G  ++ ++      P+ V ++ LI  LC + +I EA  L   +K  G
Sbjct: 304 LLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKG 363

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  LI   CR G   VA+   E M +        C P+ V Y T++  LCK G
Sbjct: 364 LTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDG------CLPDIVNYNTVLATLCKNG 417

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A E+F ++ +   +P+  +YN++      + D   A  +++EMM  G+ PD +T+N
Sbjct: 418 KADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYN 477

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+ G +DEA  LL  M     +P+  T++ ++ GFC   R+  A  +  SM   
Sbjct: 478 SMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGN 537

Query: 388 GCKHTVFSY 396
           GC+    +Y
Sbjct: 538 GCRPNETTY 546



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 144/284 (50%), Gaps = 8/284 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++   P + S+N+L   L     ++    L  ++ S    P++ TY+ILI   C+ G+
Sbjct: 289 LELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGK 348

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  +     TPDA ++  LI   C E R+  A      + + GC P+++ Y+T
Sbjct: 349 IEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYNT 408

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           ++  LC+ G    AL +F       GK G V C PN+ +Y T+   L   G   +A  + 
Sbjct: 409 VLATLCKNGKADQALEIF-------GKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMI 461

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           L+M    I+PD +TYNS+I   C     +EA  LL++M      P VVT+N+++   CK 
Sbjct: 462 LEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKA 521

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            ++++A  +LE M+  G  PN +T++ L++G    G    A EL
Sbjct: 522 HRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRAEAMEL 565



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 149/309 (48%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M +   SP  +T +N++ G L      D  L +  +L S    P + TY I
Sbjct: 175 DDATRVLDRMRSKDFSPDTVT-YNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTI 233

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI      G V     ++  +L     PD   + ++I+G+C E  +  A  +   L+  G
Sbjct: 234 LIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKG 293

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+VI+Y+ L+  L   G       L  +M      F   C PN VTY+ +I  LC++G
Sbjct: 294 CEPDVISYNILLRALLNQGKWEEGEKLMTKM------FSEKCDPNVVTYSILITTLCRDG 347

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L   MK+K + PD  +Y+ LI  FC     + A   L  M+  G  PD+V +N
Sbjct: 348 KIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMISDGCLPDIVNYN 407

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCKNGK D+A  +   +   G +PN+S+++T+      +G    A  + + M S 
Sbjct: 408 TVLATLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSN 467

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 468 GIDPDEITY 476



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 2/136 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +S+N +F  L  +      L +   + S G+ PD  TYN +I+C C+ G V   F +
Sbjct: 436 PNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFEL 495

Query: 165 LGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L   +RSC F P  V +  ++ G C   RI +A  +   +   GC+PN  TY+ LI G+ 
Sbjct: 496 LVD-MRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIG 554

Query: 224 RTGHTIVALNLFEEMA 239
             G+   A+ L  ++ 
Sbjct: 555 FAGYRAEAMELANDLV 570


>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
 gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
          Length = 655

 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 161/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  + D M     +P PP+  ++++     +   + + + + + L++ G   D+   N+
Sbjct: 140 DALAVLDEMPRRGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 197

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  C  G V     +L  +      PD V++ +++KGLC   R      L  ++    
Sbjct: 198 VLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMA 257

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN++T++TLI+ LCR G       +  +MA         C P+   Y TIIDG+CKEG
Sbjct: 258 CPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHG------CTPDIRMYATIIDGICKEG 311

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A E+  +M    + P+VV YN+L+ G C A  W E   LL EM D+    D VTFN
Sbjct: 312 HLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 371

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  C+NG +D    LLE M++ G  P+  T++T+++GFC  G ++ A  L  SM + 
Sbjct: 372 ILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 431

Query: 388 GCKHTVFSY 396
           GCK    SY
Sbjct: 432 GCKPNTISY 440



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 158/308 (51%), Gaps = 10/308 (3%)

Query: 92  CIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           C+ + M  M     PP + +FN L   L +   ++ V  +  ++   G  PD+  Y  +I
Sbjct: 245 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATII 304

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +     +L R+      P+ V + +L+KGLC+  R  E   L  ++    C 
Sbjct: 305 DGICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 364

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            + +T++ L++  C+ G     + L E+M  +G       C P+ +TYTT+I+G CKEG 
Sbjct: 365 LDDVTFNILVDFFCQNGLVDRVIELLEQMLVHG-------CMPDVITYTTVINGFCKEGL 417

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  L   M      P+ ++Y  ++ G C A  W +A  L+ +M+ QG   + +TFN 
Sbjct: 418 IDEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNT 477

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK G +++A  LL+ M++ G +P+  ++ST++DG    G+ + A EL   M + G
Sbjct: 478 LINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKG 537

Query: 389 CKHTVFSY 396
                  Y
Sbjct: 538 MSPNTIIY 545



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 149/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 368 VTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 427

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC+  R ++A  L +++   GC  N IT++TLIN LC+ G 
Sbjct: 428 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 487

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  D+A EL   M +K ++P
Sbjct: 488 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 540

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK G+ + A   L
Sbjct: 541 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 600

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G V  A+E+   + S G
Sbjct: 601 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 12/219 (5%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V  +SLI+ LCA  R  EAA   +          V+ Y+ ++ G CR G    A  L   
Sbjct: 59  VRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLESARRL--- 112

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                    V   PN  TY  ++  LC  G +  A  +  +M  +   P    Y+ ++  
Sbjct: 113 ------AAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILEA 166

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C    +  A  +L ++  +G   DV   N++++ +C  G +D+A  LL  +   G  P+
Sbjct: 167 ACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDKALHLLRDLPSFGCEPD 226

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +++ ++ G C+  R    +EL   M  M C   + ++
Sbjct: 227 VVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 265



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    D  L L   + + G+ P+   Y+ + +   + GR++    +
Sbjct: 505 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQM 564

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A      + + GC PN  TY+ LI GL  
Sbjct: 565 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLAS 624

Query: 225 TGHTIVALNLFEEM 238
            G    A  +  E+
Sbjct: 625 EGFVKEAQEMLTEL 638



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+N   SP  +  ++ +   L++    + V+ +F  +  T +  D   YN 
Sbjct: 524 DEALELLNVMVNKGMSPNTII-YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNA 582

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G        L  ++ S   P+   +T LI+GL +E  + EA  + T+L + G
Sbjct: 583 VISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 642


>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
          Length = 484

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 7/296 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML  R   P + +FN L   + K    +   +L   +   G+ PD+YTY   I   
Sbjct: 136 VFDEMLR-RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 194

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     +   +      P+ V  T+LI   C E  +     L  ++   G K ++
Sbjct: 195 CKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADL 254

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+ L+NG CR      A ++ EEM     K G+  KP+ VTYTT+IDG CKEG +D A
Sbjct: 255 VAYNALVNGFCRVRDMKAANDIVEEMR----KDGL--KPDKVTYTTLIDGCCKEGELDTA 308

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            E+  +M D+ +  D VTY +LI G   A    +A  +L EMM+ G+QPD  T+ +++D 
Sbjct: 309 MEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 368

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            CKNG +    + L+ M  +G NP   T++ +M+GFC  G++ +A  L  +M ++G
Sbjct: 369 FCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIG 424



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 156/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+  + ++L+    PP    FN+L   + ++    +  ++F  +   G+ P + T+N L
Sbjct: 97  EAYAFYLHLLDA-GVPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTL 155

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK   +++   + G + ++   PD   + + I+GLC   RI +A  +F ++   G 
Sbjct: 156 MSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGL 215

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +  +TLI+  C+ G     L L  EMA      GV  K + V Y  +++G C+   
Sbjct: 216 NPNTVVLTTLIDAHCKEGDVTAGLELRWEMAT----RGV--KADLVAYNALVNGFCRVRD 269

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A ++  +M+   + PD VTY +LI G C   + + A  +  EM D+GV  D VT+  
Sbjct: 270 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 329

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+  +A R+L  M+  G+ P+ +T++ ++D FC  G V    +    M++ G
Sbjct: 330 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 389

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 390 KNPGIVTY 397



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 147/347 (42%), Gaps = 62/347 (17%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----------------LYT 144
           R SPP L    LL    +       V ++ K     GL PD                +  
Sbjct: 27  RDSPPRL--LPLLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPA 84

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           ++ L+N   ++  V   +     +L +   P+A  F  L++ +    ++  A  +F ++ 
Sbjct: 85  WSDLMN---RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEML 141

Query: 205 AFGCKPNVITYSTL-----------------------------------INGLCRTGHTI 229
             G +P V+T++TL                                   I GLC+TG   
Sbjct: 142 RRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQ 201

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A+ +FEEM            PNTV  TT+ID  CKEG V    EL  +M  + +  D+V
Sbjct: 202 DAMEMFEEMCERG------LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV 255

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YN+L++GFC   D   AN ++ EM   G++PD VT+  ++D  CK G++D A  + + M
Sbjct: 256 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM 315

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GV  +  T++ L+ G    GR   A+ +   M   G +    +Y
Sbjct: 316 SDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTY 362


>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
 gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
          Length = 544

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/309 (33%), Positives = 159/309 (51%), Gaps = 12/309 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M       P + ++N+L     K        SL K +   G  P+++TY+I+
Sbjct: 194 EAHALFSAM----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 249

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INC+CK+ +V   + V  +++ S   P+AV F +LI G C    + +A  LF +++  GC
Sbjct: 250 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC 309

Query: 209 KPNVITYSTLINGLCRT-GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           K  ++TY+TLI+ LC+  G    A++LF ++       G    P  VTY ++I G C   
Sbjct: 310 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLE------GAGLTPTIVTYNSLIQGFCDAR 363

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A + F +M+ K   P+V+TY+ LI G C      EA   L +M   G  P VVT+ 
Sbjct: 364 RLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYG 422

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CK G++  A    E M L G  PNT  F+TL+DG C   R N    L   M + 
Sbjct: 423 GLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAE 482

Query: 388 GCKHTVFSY 396
           GCK  V +Y
Sbjct: 483 GCKPDVITY 491



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/242 (36%), Positives = 120/242 (49%), Gaps = 11/242 (4%)

Query: 107 LTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           + ++N L   L K +    T + LF +L   GL P + TYN LI  FC   R+S      
Sbjct: 313 IVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYF 372

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             +   C  P+ + ++ LI GLC   R+ EAA     +KA G  P V+TY  LING C+ 
Sbjct: 373 DEMEGKC-APNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGYTPTVVTYGGLINGFCKC 431

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    AL  FE+M          C PNTV + T+IDGLCK    +    L   M  +   
Sbjct: 432 GELKSALLFFEKMKLAG------CAPNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCK 485

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDV+TYN LI G C AN   +A  L   M      P+V TFN ++  LC   K++EA  +
Sbjct: 486 PDVITYNCLISGLCSANRVEDAQRLFDGM---ACAPNVTTFNFLIRGLCAQKKVEEARNI 542

Query: 346 LE 347
           L+
Sbjct: 543 LD 544



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 150/322 (46%), Gaps = 42/322 (13%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L   + +D  L LFK + +    P+ +TYN+LI  FCK G++     V   +  
Sbjct: 1   NALLSGLVSARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKS 60

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
           S   P+A    +L+ GLC   ++  A  LF +++A    P   +++ L+ G    G    
Sbjct: 61  SGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGRVRD 120

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG----FVDKAKELFLQMKDKNI-- 284
           AL   ++M   +          T TY  ++ GLC E      +++A E F +MK   +  
Sbjct: 121 ALAHLQDMRKSSSSVA------TGTYNLVLKGLCWENKSANRLEQAMEFFKEMKASGVEP 174

Query: 285 ------------------------------NPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
                                         +PD++TYN L+ G+C      EA  L+ E+
Sbjct: 175 DLESYHILLSALSDSGRMAEAHALFSAMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEI 234

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +  G +P+V T+++I++  CK  K++EA  +   MI     PN  TF+TL+ GFC  G +
Sbjct: 235 LKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGML 294

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +LF  ME +GCK T+ +Y
Sbjct: 295 EDAIKLFAEMEKIGCKATIVTY 316



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/198 (31%), Positives = 93/198 (46%), Gaps = 11/198 (5%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A   +EA   FD M       P + ++++L   L K +         + + + G 
Sbjct: 357 QGFCDARRLSEAMQYFDEMEG--KCAPNVITYSILIDGLCKVRRMKEAAKTLEDMKAHGY 414

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + TY  LIN FCK G +    +   ++  +   P+ V F +LI GLC   R  +   
Sbjct: 415 TPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTLIDGLCKAERANDGLR 474

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L   + A GCKP+VITY+ LI+GLC       A  LF+ MA         C PN  T+  
Sbjct: 475 LLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFDGMA---------CAPNVTTFNF 525

Query: 259 IIDGLCKEGFVDKAKELF 276
           +I GLC +  V++A+ + 
Sbjct: 526 LIRGLCAQKKVEEARNIL 543


>gi|302792250|ref|XP_002977891.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
 gi|300154594|gb|EFJ21229.1| hypothetical protein SELMODRAFT_107819 [Selaginella moellendorffii]
          Length = 385

 Score =  183 bits (465), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 105/323 (32%), Positives = 162/323 (50%), Gaps = 33/323 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K +       L + +  +G  PD++TY  LI  FCK  +      V
Sbjct: 52  PTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKKSDDALRV 111

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
             +++   F PD V ++ LI GLC E R+ EA  LF ++ K+  C PN +TY++LI+G C
Sbjct: 112 FEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYNSLISGFC 171

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV---------CK--------------------PNTV 254
           R G    A+NL E MA       VV         CK                    PN V
Sbjct: 172 RMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRKGLTPNVV 231

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+T+++DGLC+E  +  A  +  +M+ K+ +P V TYN+++ G+C  N   EA   ++E 
Sbjct: 232 TFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYCRVNQLEEARKFMLEE 291

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           MD    P+VV+FN+++  LCK  +  EA  L+E    R  NP+   ++T++D  C   +V
Sbjct: 292 MD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMYTTVIDVLCREKKV 349

Query: 375 NHAKELFVSM-ESMGCKHTVFSY 396
           + A  ++  M E  GC     +Y
Sbjct: 350 DEACRVYRKMLEEPGCLPNSITY 372



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 153/278 (55%), Gaps = 11/278 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYN 146
           ++A  +F+ ++  R   P + +++ L   L K       + LF R+  +G   P+  TYN
Sbjct: 106 DDALRVFEQLV-ARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTYN 164

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI+ FC+MG++     +L R+  +  +PD V +T+L+ G C  +R+ +A  L  ++   
Sbjct: 165 SLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYDLLNQMTRK 224

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNV+T+++L++GLCR      A+++  EM   +      C P   TY TI+DG C+ 
Sbjct: 225 GLTPNVVTFTSLMDGLCRENRLSDAVHILGEMRRKS------CSPTVYTYNTILDGYCRV 278

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +++A++  L+  D    P+VV++N +I G C  N  +EA  L+ E   +   PDVV +
Sbjct: 279 NQLEEARKFMLEEMD--CPPNVVSFNIMIRGLCKVNRSSEAMELVEEARRRRCNPDVVMY 336

Query: 327 NVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFST 363
             ++D LC+  K+DEA R+   M+   G  PN+ T+ST
Sbjct: 337 TTVIDVLCREKKVDEACRVYRKMLEEPGCLPNSITYST 374



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 1/119 (0%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           ++D    P  VTYNSLI G C A   +EA  LL EM+  G  PD+ T+  ++   CK+ K
Sbjct: 45  VQDAEEVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDIFTYTTLITGFCKSKK 104

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
            D+A R+ E ++ RG  P+  T+S L+DG C  GR+  A +LF  M +S  C     +Y
Sbjct: 105 SDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSCMPNTVTY 163


>gi|116310235|emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 164/304 (53%), Gaps = 8/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++   +F+  +  R   P + SFN++   + +       L L +R+N  G  PD  T+NI
Sbjct: 230 HDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNI 289

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++  C+   VS G  VL R+ R     P+ V FTS+I G C   ++ +A A++  + A 
Sbjct: 290 IVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVAS 349

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN +TY+ LING  + G    A+ ++++M        + C P+ VT++++IDG C+ 
Sbjct: 350 GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMTR------LRCPPDVVTFSSLIDGYCRC 403

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A  ++  M    I P+V T++ +IH  C  N  +EA  LL E+ +   + P    
Sbjct: 404 GQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLLNELNLRPDIAPQAFI 463

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK GK+DEA+ + + M  +G  P+  T++ L+ G+C+  R++ A   F  M 
Sbjct: 464 YNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMV 523

Query: 386 SMGC 389
             GC
Sbjct: 524 EAGC 527



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 159/291 (54%), Gaps = 9/291 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGR 167
           ++N L   L        V++LF+R     L+ PD++++N++I   C++G+V     ++ R
Sbjct: 215 AYNKLMSSLIGRGRVHDVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVER 274

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTG 226
           +     +PD V    ++ GLC  + +     +  +L+  G C PNV+T++++I+G C+ G
Sbjct: 275 MNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAG 334

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ ++ +M       G++  PNTVTY  +I+G  K G +  A E++ QM      P
Sbjct: 335 KLEDAMAVYNDMVAS----GIM--PNTVTYNVLINGYGKVGDLGSAVEVYQQMTRLRCPP 388

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVT++SLI G+C     ++A  +  +M    +QP+V TF++I+  LCK  + DEA RLL
Sbjct: 389 DVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCKQNRSDEAIRLL 448

Query: 347 ELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + LR  + P    ++ ++D  C  G+V+ A  +   ME  GC+   ++Y
Sbjct: 449 NELNLRPDIAPQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGCRPDKYTY 499



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 124/244 (50%), Gaps = 5/244 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  +     K    +  ++++  + ++G+ P+  TYN+LIN + K+G +     V
Sbjct: 318 PNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLGSAVEV 377

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ R    PD V F+SLI G C   ++ +A  +++ +     +PNV T+S +I+ LC+
Sbjct: 378 YQQMTRLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSLCK 437

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A+ L  E+   N +  +   P    Y  +ID LCK G VD+A  +   M++K  
Sbjct: 438 QNRSDEAIRLLNEL---NLRPDIA--PQAFIYNPVIDVLCKCGKVDEANLIRKGMEEKGC 492

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  LI G+C  +  +EA     EM++ G  PD +T N  +  L K G  +E   
Sbjct: 493 RPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGMPNEVDH 552

Query: 345 LLEL 348
           ++ L
Sbjct: 553 VMRL 556



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 42/261 (16%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEA------------------------------------ 196
            TP A +   +I  LC   R  +A                                    
Sbjct: 138 ITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHYGYSPDARFLSFLVSSCTCANLLDAS 197

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           A L +K   FGC+     Y+ L++ L   G     + LFE           +  P+  ++
Sbjct: 198 ATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDVVALFERWIQDR-----LYSPDVWSF 252

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I G+C+ G V KA EL  +M +   +PD VT+N ++ G C  N+ +  + +L  +  
Sbjct: 253 NVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNIIVDGLCRTNEVSRGHEVLRRLQR 312

Query: 317 QGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            GV  P+VVTF  ++   CK GK+++A  +   M+  G+ PNT T++ L++G+   G + 
Sbjct: 313 DGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASGIMPNTVTYNVLINGYGKVGDLG 372

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A E++  M  + C   V ++
Sbjct: 373 SAVEVYQQMTRLRCPPDVVTF 393



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 68/248 (27%), Positives = 106/248 (42%), Gaps = 48/248 (19%)

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYST-----LINGLCRTGHTIVALNLFEEMANGN 242
           CA S    A A+FT L    C P  IT S      +I  LCR+G    AL LF++M    
Sbjct: 120 CASS----ALAVFTALH---CSPLSITPSAHSCQQIIVVLCRSGRQADALQLFDQMTTHY 172

Query: 243 G--------------------------------KFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           G                                +FG  C+     Y  ++  L   G V 
Sbjct: 173 GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFG--CRVEAYAYNKLMSSLIGRGRVH 230

Query: 271 KAKELFLQ-MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
               LF + ++D+  +PDV ++N +I G C      +A  L+  M + G  PD VT N+I
Sbjct: 231 DVVALFERWIQDRLYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNII 290

Query: 330 MDELCKNGKMDEASRLLELMILRGV-NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D LC+  ++     +L  +   GV  PN  TF++++ G+C  G++  A  ++  M + G
Sbjct: 291 VDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAVYNDMVASG 350

Query: 389 CKHTVFSY 396
                 +Y
Sbjct: 351 IMPNTVTY 358


>gi|32489924|emb|CAE05516.1| OSJNBa0038P21.9 [Oryza sativa Japonica Group]
          Length = 825

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 173/363 (47%), Gaps = 57/363 (15%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT----- 125
           +ER +S   G      P++A  +FD +L  R +P P    N L   LA+           
Sbjct: 114 RERLRSGTLG------PDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVP 167

Query: 126 --VLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
              + LFKR++        P +YTYNILINC+ +  R   G  V GR+LR+   PD  ++
Sbjct: 168 ALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSY 227

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            +LI G   E  + +A  LF K++  G  PNV+TYS+LINGLC+T     A  +  +M  
Sbjct: 228 NALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMV- 286

Query: 241 GNGKFGVVCKPNTVTYTTIIDG-----------------------------------LCK 265
                G   +PN +TY  +I G                                   LCK
Sbjct: 287 -----GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 341

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G + +A+++F  M  K   PDV++Y +L+HG+  A      + L   M+ +GV PD   
Sbjct: 342 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 401

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN +++   + G MD++  + E M  +GVNP+  TFST++  FC  GR++ A E F  M 
Sbjct: 402 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 461

Query: 386 SMG 388
             G
Sbjct: 462 DTG 464



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 170/394 (43%), Gaps = 100/394 (25%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P + ++N+L  C  + +  D  L +F RL  TGL PD+++YN LI+ F K G V    
Sbjct: 185 AAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAH 244

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING- 221
            +  ++      P+ V ++SLI GLC    + +A  +  ++   G +PN +TY+ LI+G 
Sbjct: 245 DLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGY 304

Query: 222 ----------------------------------LCRTGHTIVALNLFEEMA-------- 239
                                             LC+ G    A ++F+ M         
Sbjct: 305 STSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDV 364

Query: 240 -------NGNGKFG-----------VVCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                  +G    G           +VC+   P+   + T+I+   + G +DK+  +F  
Sbjct: 365 ISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFED 424

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT------------- 325
           M  + +NPD++T++++I  FC     ++A      M+D GV PD                
Sbjct: 425 MTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRD 484

Query: 326 -----------------------FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
                                  F  I++ LCK G++ E   +++L+I  G  PN  TF+
Sbjct: 485 LVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFN 544

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+DG+CL G +  A  L  SMES+G +  +++Y
Sbjct: 545 SLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 578



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN L    A+    D  L +F+ +   G+ PD+ T++ +I+ FC++GR+      
Sbjct: 397 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 456

Query: 165 LGRILRSCFTPDAVA------------------------------------FTSLIKGLC 188
              ++ +   PD                                       FTS+I  LC
Sbjct: 457 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 516

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E R+ E   +   +   G +PN+IT+++L++G C  G+   A+ L + M +      V 
Sbjct: 517 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMES------VG 570

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +P+  TY T++DG CK G +D A  LF  M  K +    V+YN ++HG   A     A 
Sbjct: 571 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 630

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  EM++ G+   + T+  ++  LC+N   DEA+ LLE +    V  +  TF+ ++   
Sbjct: 631 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM 690

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GR   AKELF ++ + G   T+ +Y
Sbjct: 691 FKVGRRQEAKELFAAISTYGLVPTILTY 718



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYN 146
           ++A   F++M++    PP    ++ L       +       L   + S G+ P  +  + 
Sbjct: 451 DDAMEKFNHMIDT-GVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 509

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +IN  CK GRV+ G  V+  I+ +   P+ + F SL+ G C    + EA  L   +++ 
Sbjct: 510 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 569

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P++ TY+TL++G C+ G    AL LF +M +            +V+Y  I+ GL + 
Sbjct: 570 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTL------TSVSYNIILHGLFQA 623

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
                AKE+F +M +  +   + TY +++ G C  N  +EAN LL ++    V+ D++TF
Sbjct: 624 RRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTF 683

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++  + K G+  EA  L   +   G+ P   T+  ++           A  LF SME 
Sbjct: 684 NIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEK 743

Query: 387 MGC 389
             C
Sbjct: 744 SSC 746



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 127/269 (47%), Gaps = 6/269 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L        +    + L   + S G+ PD+YTYN L++ +CK GR+     +
Sbjct: 538 PNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTL 597

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L    T  +V++  ++ GL    R + A  +F ++   G   ++ TY+T++ GLCR
Sbjct: 598 FRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCR 657

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              T  A  L E++ + N KF ++      T+  +I  + K G   +AKELF  +    +
Sbjct: 658 NNCTDEANMLLEKLFSMNVKFDIL------TFNIVIRAMFKVGRRQEAKELFAAISTYGL 711

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P ++TY  +I        + +A+ L   M      PD    N I+  L   G++ +A  
Sbjct: 712 VPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGN 771

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGR 373
            L  +  +G+ P  +T S L+  F + G+
Sbjct: 772 YLSKIDKKGILPEATTTSLLIYLFSVNGK 800



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 11/205 (5%)

Query: 196 AAALFTKLKAFGC---KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKP 251
           A  LF ++    C    P + TY+ LIN   R     + L +F  +   G G       P
Sbjct: 170 AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLG-------P 222

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  +Y  +IDG  KEG VDKA +LF +M+++ I P+VVTY+SLI+G C   + ++A  +L
Sbjct: 223 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 282

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+  GV+P+ +T+N ++     +G   E+ R+ + M    + P+    ++ M   C  
Sbjct: 283 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 342

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           GR+  A+++F SM   G K  V SY
Sbjct: 343 GRIKEARDIFDSMVLKGPKPDVISY 367


>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 598

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 158/295 (53%), Gaps = 12/295 (4%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P   P T+    F  L KT+    +L +   L  +G  PD+ TYN++I+ +CK G +++ 
Sbjct: 135 PDIIPCTTLIRGFCRLGKTRKAAKILEI---LEGSGAVPDVITYNVMISGYCKAGEINNA 191

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             VL R+     +PD V + ++++ LC   ++ +A  +  ++    C P+VITY+ LI  
Sbjct: 192 LSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEA 248

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            CR      A+ L +EM +        C P+ VTY  +++G+CKEG +D+A +    M  
Sbjct: 249 TCRDSGVGHAMKLLDEMRDRG------CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+V+T+N ++   C    W +A  LL +M+ +G  P VVTFN++++ LC+ G +  
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  +LE M   G  PN+ +++ L+ GFC   +++ A E    M S GC   + +Y
Sbjct: 363 AIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTY 417



 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 165/328 (50%), Gaps = 15/328 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            ++  C+ SG G         A  + D M + R   P + ++N+L   + K    D  + 
Sbjct: 245 LIEATCRDSGVG--------HAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIK 295

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
               + S+G  P++ T+NI++   C  GR      +L  +LR  F+P  V F  LI  LC
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +  +  A  +  K+   GC+PN ++Y+ L++G C+      A+   E M +        
Sbjct: 356 RKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------ 409

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ VTY T++  LCK+G V+ A E+  Q+  K  +P ++TYN++I G   A    +A 
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  + ++PD +T++ ++  L + GK+DEA +        G+ PN  TF+++M G 
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGL 529

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C + + + A +  V M + GCK    SY
Sbjct: 530 CKSRQTDRAIDFLVFMINRGCKPNETSY 557



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 148/287 (51%), Gaps = 9/287 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     +L ++ +    P+++++  L+ G C E ++  A     ++ + GC P+++T
Sbjct: 357 KGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+T++  LC+ G    A+ +  ++++        C P  +TY T+IDGL K G   KA +
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKG------CSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K++ PD +TY+SL+ G       +EA     E    G++P+ VTFN IM  LC
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLC 530

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           K+ + D A   L  MI RG  PN ++++ L++G    G    A EL 
Sbjct: 531 KSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEALELL 577



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/275 (32%), Positives = 141/275 (51%), Gaps = 17/275 (6%)

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
           HY +V       NS+    D+ + N L     + G +  GF  L  ++     PD +  T
Sbjct: 90  HYSSV-------NSSFALEDVESNNHLRQ-MVRTGELEEGFKFLENMVYHGNVPDIIPCT 141

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI+G C   +  +AA +   L+  G  P+VITY+ +I+G C+ G    AL++ + M+  
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS-- 199

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                    P+ VTY TI+  LC  G + +A E+  +M  ++  PDV+TY  LI   C  
Sbjct: 200 -------VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRD 252

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           +    A  LL EM D+G  PDVVT+NV+++ +CK G++DEA + L  M   G  PN  T 
Sbjct: 253 SGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITH 312

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++   C TGR   A++L   M   G   +V ++
Sbjct: 313 NIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTF 347



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 144/257 (56%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L R++ R C+ PD V + +++  LC + ++ +A  +  +L + GC P +ITY+T+I+GL 
Sbjct: 402 LERMVSRGCY-PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L +EM   +       KP+T+TY++++ GL +EG VD+A + F + +   
Sbjct: 461 KAGKTGKAIKLLDEMRAKD------LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ VT+NS++ G C +   + A   L+ M+++G +P+  ++ ++++ L   G   EA 
Sbjct: 515 IRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEAL 574

Query: 344 RLLELMILRGVNPNTST 360
            LL  +  +G+   +S 
Sbjct: 575 ELLNELCNKGLMKKSSA 591


>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
 gi|224030695|gb|ACN34423.1| unknown [Zea mays]
 gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
          Length = 756

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 157/307 (51%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D ML     P   T +N +  CL+K    D    +  ++   G  PD  T+N LI
Sbjct: 319 ALKVMDLMLQEGHDPDVFT-YNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLI 377

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              C   R+     +   +     +PD   F  LI  LC          LF ++K+ GC 
Sbjct: 378 VALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCA 437

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ +TY+ LI+ LC  G  + AL+L +EM + NG     C  +TVTY TIID LCK+  +
Sbjct: 438 PDEVTYNILIDHLCSMGKLVNALDLLKEMES-NG-----CPRSTVTYNTIIDALCKQMRI 491

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A+E+F QM    I+   VT+N+LI G C A   ++A  L+ +M+ +G+QP  +T+N I
Sbjct: 492 EEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSI 551

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   CK G + +A+ +LE M   G   +  T+ TL++G C  GR   A +L   M   G 
Sbjct: 552 LTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGI 611

Query: 390 KHTVFSY 396
           + T  +Y
Sbjct: 612 RPTPKAY 618



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 159/310 (51%), Gaps = 9/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I + M++ R   P  T+FN L   L      +  L L + L   GL PD+YT+NI
Sbjct: 352 DEAKGIVNQMVD-RGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNI 410

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK+G    G  +   +  S   PD V +  LI  LC+  +++ A  L  ++++ G
Sbjct: 411 LINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNG 470

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C  + +TY+T+I+ LC+      A  +F++M A+G  +       + VT+ T+IDGLCK 
Sbjct: 471 CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISR-------SAVTFNTLIDGLCKA 523

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +D A EL  QM  + + P  +TYNS++  +C   D  +A  +L  M   G + DVVT+
Sbjct: 524 KRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTY 583

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             +++ LCK G+   A +LL  M ++G+ P    ++ ++        +  A  LF  M  
Sbjct: 584 GTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALSLFREMTE 643

Query: 387 MGCKHTVFSY 396
           +G      +Y
Sbjct: 644 VGEPPDALTY 653



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 147/296 (49%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + + N L   L +     T + + + ++S  + PD  T+  L+  F + G +  
Sbjct: 189 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEA 248

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V  +++ +  +P  V    LI G C   R+ +A     K  A G +P+ +TY+T ++
Sbjct: 249 ALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVH 308

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+ GH   AL + + M            P+  TY T+I+ L K G +D+AK +  QM 
Sbjct: 309 CLCQNGHVSHALKVMDLMLQEGH------DPDVFTYNTVINCLSKNGELDEAKGIVNQMV 362

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D+   PD  T+N+LI   C  N   EA  L  E+  +G+ PDV TFN++++ LCK G   
Sbjct: 363 DRGCLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPH 422

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              RL E M   G  P+  T++ L+D  C  G++ +A +L   MES GC  +  +Y
Sbjct: 423 LGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALDLLKEMESNGCPRSTVTY 478



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 147/288 (51%), Gaps = 8/288 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   LA+      + S++  +   G+ PD+ T N LI   C+  +V    ++L  + 
Sbjct: 163 YNHLLNVLAEGSRMKLLESVYNEMTDRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 222

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   FT+L++G   E  I  A  + TK+   GC P  +T + LING C+ G   
Sbjct: 223 SHAVAPDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVE 282

Query: 230 VALNLFE-EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            AL   + E+A+G        +P+ VTY T +  LC+ G V  A ++   M  +  +PDV
Sbjct: 283 DALGYIQKEIADG-------FEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDV 335

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            TYN++I+      + +EA  ++ +M+D+G  PD  TFN ++  LC   +++EA  L   
Sbjct: 336 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEEALDLARE 395

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++G++P+  TF+ L++  C  G  +    LF  M+S GC     +Y
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTY 443



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 146/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T+F  L     +    +  L +  ++  TG  P   T N+LIN +CKMGRV      
Sbjct: 228 PDETTFTTLMQGFIEEGSIEAALRVKTKMMETGCSPTRVTVNVLINGYCKMGRVEDALGY 287

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + + +   F PD V + + +  LC    +  A  +   +   G  P+V TY+T+IN L +
Sbjct: 288 IQKEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSK 347

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +  +M +        C P+T T+ T+I  LC +  +++A +L  ++  K +
Sbjct: 348 NGELDEAKGIVNQMVDRG------CLPDTTTFNTLIVALCSQNRLEEALDLARELTVKGL 401

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDV T+N LI+  C   D +    L  EM   G  PD VT+N+++D LC  GK+  A  
Sbjct: 402 SPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGKLVNALD 461

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M   G   +T T++T++D  C   R+  A+E+F  M++ G   +  ++
Sbjct: 462 LLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTF 513



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++   P + +FN+L   L K       + LF+ + S+G  PD  TYNILI+  C MG+
Sbjct: 396 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCSMGK 455

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           + +   +L  +  +      V + ++I  LC + RI EA  +F ++ A G   + +T++T
Sbjct: 456 LVNALDLLKEMESNGCPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNT 515

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC+      A  L E+M     K G+  +P+ +TY +I+   CK+G + KA ++  
Sbjct: 516 LIDGLCKAKRIDDATELIEQMV----KEGL--QPSNITYNSILTHYCKQGDLKKAADILE 569

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M       DVVTY +LI+G C A     A  LL  M  +G++P    +N ++  L +  
Sbjct: 570 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 629

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR-VNHAKELFVSMESMG 388
            + +A  L   M   G  P+  T+  +  G C  G  +  A +  V M + G
Sbjct: 630 NLRDALSLFREMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKG 681



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 135/280 (48%), Gaps = 7/280 (2%)

Query: 118 AKTKHYDTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           A+ + +D  + L + +LN+ G+  D   YN L+N   +  R+     V   +      PD
Sbjct: 135 ARLRRFDDAVDLVRNQLNTFGVQADTAVYNHLLNVLAEGSRMKLLESVYNEMTDRGIQPD 194

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V   +LIK LC   ++  A  +  ++ +    P+  T++TL+ G    G    AL +  
Sbjct: 195 VVTLNTLIKALCRAHQVRTAVLMLEEMSSHAVAPDETTFTTLMQGFIEEGSIEAALRVKT 254

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M          C P  VT   +I+G CK G V+ A     +       PD VTYN+ +H
Sbjct: 255 KMMETG------CSPTRVTVNVLINGYCKMGRVEDALGYIQKEIADGFEPDQVTYNTFVH 308

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C     + A  ++  M+ +G  PDV T+N +++ L KNG++DEA  ++  M+ RG  P
Sbjct: 309 CLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGCLP 368

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +T+TF+TL+   C   R+  A +L   +   G    V+++
Sbjct: 369 DTTTFNTLIVALCSQNRLEEALDLARELTVKGLSPDVYTF 408



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 7/248 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F ++++ G+     T+N LI+  CK  R+     
Sbjct: 472 PRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSAVTFNTLIDGLCKAKRIDDATE 531

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ ++++    P  + + S++   C +  + +AA +   + A G + +V+TY TLINGLC
Sbjct: 532 LIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDVVTYGTLINGLC 591

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL L   M           +P    Y  +I  L +   +  A  LF +M +  
Sbjct: 592 KAGRTQVALKLLRGMRIKG------IRPTPKAYNPVIQSLFRRNNLRDALSLFREMTEVG 645

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD +TY  +  G C       EA   L+EM+++G  P+  +F ++ + L   G  D  
Sbjct: 646 EPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYL 705

Query: 343 SRLLELMI 350
              +EL+I
Sbjct: 706 ISAIELII 713


>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
 gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
          Length = 420

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 9/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF  M   + S P   ++N+L   L K    +  +SL   + + G  P + TY  L
Sbjct: 109 EAMEIFREM-EEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVVTYTTL 167

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG- 207
           I+ FC  GRV     +L  +     TP+ V +T+LI+GLC    +  A  +  ++K  G 
Sbjct: 168 IHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGN 227

Query: 208 -CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C PNV+TY+ LI+GLC+ G   + +   +EM          C PN  TYT +I GLC++
Sbjct: 228 ECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG------CFPNNATYTALIHGLCQK 281

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A  L  +M       DVV YNSLI G C   + + A  + I M+++GV PDV T+
Sbjct: 282 GSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTY 341

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  LC  G +DEA  L++ M  +G+ PN+ T++TL++GF    R +HA +L   M+S
Sbjct: 342 TSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKS 401

Query: 387 MG 388
            G
Sbjct: 402 NG 403



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 6/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S++     L K       + +F+ +   G  PD +TYNILIN  CK  ++  G  ++ 
Sbjct: 91  VISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMD 150

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +    F+P  V +T+LI G C   R+  A  +  +++  G  PN +TY+ LI GLC  G
Sbjct: 151 EMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCG 210

Query: 227 HTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
               A+ + +EM   GN      C PN VTYT +I GLC++G  +   E   +M      
Sbjct: 211 EVERAILVLKEMKLRGNE-----CCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCF 265

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+  TY +LIHG C    + EA  LL EM+  G + DVV +N ++D LCK G++D A  +
Sbjct: 266 PNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAREM 325

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             LM+ +GV P+  T+++L+ G C  G ++ A  L   M + G      +Y
Sbjct: 326 QILMVEKGVAPDVFTYTSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTY 376



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 138/258 (53%), Gaps = 8/258 (3%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+ +Y+  IN  CK G+++    +   +      PD+  +  LI GLC ++++    +L 
Sbjct: 90  DVISYSRKINGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLM 149

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            +++A G  P V+TY+TLI+G C  G    A+++ +EM +     G+   PNTVTYT +I
Sbjct: 150 DEMQARGFSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEH----RGIT--PNTVTYTALI 203

Query: 261 DGLCKEGFVDKAKELFLQMKDKNIN--PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            GLC  G V++A  +  +MK +     P+VVTY  LIHG C    +      L EM+  G
Sbjct: 204 QGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMGMEFLDEMIISG 263

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             P+  T+  ++  LC+ G   EA+ LL  M+  G   +   +++L+DG C  G ++ A+
Sbjct: 264 CFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCELDVVIYNSLIDGLCKMGELDFAR 323

Query: 379 ELFVSMESMGCKHTVFSY 396
           E+ + M   G    VF+Y
Sbjct: 324 EMQILMVEKGVAPDVFTY 341



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 83/254 (32%), Positives = 130/254 (51%), Gaps = 11/254 (4%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFP 140
           TA   + A  I D M +   +P  +T   L+ G L      +  + + K +   G    P
Sbjct: 173 TAGRVDAAMDILDEMEHRGITPNTVTYTALIQG-LCDCGEVERAILVLKEMKLRGNECCP 231

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           ++ TY  LI+  C+ G    G   L   I+  CF P+   +T+LI GLC +   +EAA L
Sbjct: 232 NVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCF-PNNATYTALIHGLCQKGSFLEAAVL 290

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++ A GC+ +V+ Y++LI+GLC+ G     L+   EM     + GV   P+  TYT++
Sbjct: 291 LNEMVAIGCELDVVIYNSLIDGLCKMGE----LDFAREMQILMVEKGVA--PDVFTYTSL 344

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I GLC  G +D+A  L  +M+ K I P+ VTY +LI+GF  A+  + A  L+ EM   G+
Sbjct: 345 IQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKSNGL 404

Query: 320 QPDVVTFNVIMDEL 333
            P    + ++   L
Sbjct: 405 MPAGDIYKILFKSL 418


>gi|222628658|gb|EEE60790.1| hypothetical protein OsJ_14375 [Oryza sativa Japonica Group]
          Length = 754

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/363 (31%), Positives = 173/363 (47%), Gaps = 57/363 (15%)

Query: 71  KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT----- 125
           +ER +S   G      P++A  +FD +L  R +P P    N L   LA+           
Sbjct: 43  RERLRSGTLG------PDDARHLFDELLLRRDAPAPARGLNELLSALARAPPSAACRDVP 96

Query: 126 --VLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
              + LFKR++        P +YTYNILINC+ +  R   G  V GR+LR+   PD  ++
Sbjct: 97  ALAVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSY 156

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            +LI G   E  + +A  LF K++  G  PNV+TYS+LINGLC+T     A  +  +M  
Sbjct: 157 NALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMV- 215

Query: 241 GNGKFGVVCKPNTVTYTTIIDG-----------------------------------LCK 265
                G   +PN +TY  +I G                                   LCK
Sbjct: 216 -----GAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCK 270

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G + +A+++F  M  K   PDV++Y +L+HG+  A      + L   M+ +GV PD   
Sbjct: 271 HGRIKEARDIFDSMVLKGPKPDVISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHV 330

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN +++   + G MD++  + E M  +GVNP+  TFST++  FC  GR++ A E F  M 
Sbjct: 331 FNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMI 390

Query: 386 SMG 388
             G
Sbjct: 391 DTG 393



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 170/394 (43%), Gaps = 100/394 (25%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P + ++N+L  C  + +  D  L +F RL  TGL PD+++YN LI+ F K G V    
Sbjct: 114 AAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLGPDVFSYNALIDGFSKEGEVDKAH 173

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING- 221
            +  ++      P+ V ++SLI GLC    + +A  +  ++   G +PN +TY+ LI+G 
Sbjct: 174 DLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVLRQMVGAGVRPNNMTYNCLIHGY 233

Query: 222 ----------------------------------LCRTGHTIVALNLFEEM--------- 238
                                             LC+ G    A ++F+ M         
Sbjct: 234 STSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKHGRIKEARDIFDSMVLKGPKPDV 293

Query: 239 ----------------ANGNGKFGV-VCK---PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                           A  +  F V VC+   P+   + T+I+   + G +DK+  +F  
Sbjct: 294 ISYGALLHGYATAGCIAGMDNLFNVMVCEGVVPDRHVFNTLINAYARLGMMDKSLLMFED 353

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT------------- 325
           M  + +NPD++T++++I  FC     ++A      M+D GV PD                
Sbjct: 354 MTKQGVNPDIITFSTVISAFCRLGRLDDAMEKFNHMIDTGVPPDTAVYSCLIQGQCNRRD 413

Query: 326 -----------------------FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
                                  F  I++ LCK G++ E   +++L+I  G  PN  TF+
Sbjct: 414 LVKAKELISDMLSKGIPPPCIKFFTSIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFN 473

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+DG+CL G +  A  L  SMES+G +  +++Y
Sbjct: 474 SLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTY 507



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN L    A+    D  L +F+ +   G+ PD+ T++ +I+ FC++GR+      
Sbjct: 326 PDRHVFNTLINAYARLGMMDKSLLMFEDMTKQGVNPDIITFSTVISAFCRLGRLDDAMEK 385

Query: 165 LGRILRSCFTPDAVA------------------------------------FTSLIKGLC 188
              ++ +   PD                                       FTS+I  LC
Sbjct: 386 FNHMIDTGVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFTSIINNLC 445

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E R+ E   +   +   G +PN+IT+++L++G C  G+   A+ L + M +      V 
Sbjct: 446 KEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMES------VG 499

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +P+  TY T++DG CK G +D A  LF  M  K +    V+YN ++HG   A     A 
Sbjct: 500 VEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTLTSVSYNIILHGLFQARRTIVAK 559

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  EM++ G+   + T+  ++  LC+N   DEA+ LLE +    V  +  TF+ ++   
Sbjct: 560 EMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTFNIVIRAM 619

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GR   AKELF ++ + G   T+ +Y
Sbjct: 620 FKVGRRQEAKELFAAISTYGLVPTILTY 647



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 145/303 (47%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-LYTYN 146
           ++A   F++M++    PP    ++ L       +       L   + S G+ P  +  + 
Sbjct: 380 DDAMEKFNHMIDT-GVPPDTAVYSCLIQGQCNRRDLVKAKELISDMLSKGIPPPCIKFFT 438

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +IN  CK GRV+ G  V+  I+ +   P+ + F SL+ G C    + EA  L   +++ 
Sbjct: 439 SIINNLCKEGRVAEGKDVVDLIIHTGQRPNLITFNSLVDGYCLVGNMKEAVGLLDSMESV 498

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P++ TY+TL++G C+ G    AL LF +M +            +V+Y  I+ GL + 
Sbjct: 499 GVEPDIYTYNTLVDGYCKHGRIDDALTLFRDMLHKRVTL------TSVSYNIILHGLFQA 552

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
                AKE+F +M +  +   + TY +++ G C  N  +EAN LL ++    V+ D++TF
Sbjct: 553 RRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCRNNCTDEANMLLEKLFSMNVKFDILTF 612

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++  + K G+  EA  L   +   G+ P   T+  ++           A  LF SME 
Sbjct: 613 NIVIRAMFKVGRRQEAKELFAAISTYGLVPTILTYRVMITNLIKEESFEDADNLFSSMEK 672

Query: 387 MGC 389
             C
Sbjct: 673 SSC 675



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 129/277 (46%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L        +    + L   + S G+ PD+YTYN L++ +CK GR+     +
Sbjct: 467 PNLITFNSLVDGYCLVGNMKEAVGLLDSMESVGVEPDIYTYNTLVDGYCKHGRIDDALTL 526

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L    T  +V++  ++ GL    R + A  +F ++   G   ++ TY+T++ GLCR
Sbjct: 527 FRDMLHKRVTLTSVSYNIILHGLFQARRTIVAKEMFHEMIESGMAVSIHTYATVLGGLCR 586

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              T  A  L E++ + N KF ++      T+  +I  + K G   +AKELF  +    +
Sbjct: 587 NNCTDEANMLLEKLFSMNVKFDIL------TFNIVIRAMFKVGRRQEAKELFAAISTYGL 640

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P ++TY  +I        + +A+ L   M      PD    N I+  L   G++ +A  
Sbjct: 641 VPTILTYRVMITNLIKEESFEDADNLFSSMEKSSCTPDSRILNEIIRMLLNKGEVAKAGN 700

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            L  +  +G+ P  +T S L+  F + G+     +L 
Sbjct: 701 YLSKIDKKGILPEATTTSLLIYLFSVNGKYREYIKLL 737



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 67/205 (32%), Positives = 109/205 (53%), Gaps = 11/205 (5%)

Query: 196 AAALFTKLKAFGC---KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKP 251
           A  LF ++    C    P + TY+ LIN   R     + L +F  +   G G       P
Sbjct: 99  AVELFKRMDRCACPEAAPTIYTYNILINCYRRARRPDLGLPVFGRLLRTGLG-------P 151

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  +Y  +IDG  KEG VDKA +LF +M+++ I P+VVTY+SLI+G C   + ++A  +L
Sbjct: 152 DVFSYNALIDGFSKEGEVDKAHDLFYKMEEQGIMPNVVTYSSLINGLCKTKEMDKAERVL 211

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+  GV+P+ +T+N ++     +G   E+ R+ + M    + P+    ++ M   C  
Sbjct: 212 RQMVGAGVRPNNMTYNCLIHGYSTSGMWKESVRVFKEMSSSLLVPDVGNCNSFMTALCKH 271

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           GR+  A+++F SM   G K  V SY
Sbjct: 272 GRIKEARDIFDSMVLKGPKPDVISY 296


>gi|224068454|ref|XP_002326124.1| predicted protein [Populus trichocarpa]
 gi|222833317|gb|EEE71794.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/303 (34%), Positives = 164/303 (54%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F   L M+ SPP   +FN+L   L +    D    +FK + S G  PD+ TYN 
Sbjct: 160 HEAIYLFKEYLVMQ-SPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDVVTYNT 218

Query: 148 LINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LIN  CK   V  G  +   I  RS  +PD V +TS+I G C   ++ EA+ LF ++   
Sbjct: 219 LINGLCKANEVQRGCELFKEIQSRSDCSPDIVTYTSIISGFCKSGKMKEASNLFEEMMRS 278

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PNVIT++ LI+G  + G+   A  ++ +MA  +      C  + VT+T++IDG C+ 
Sbjct: 279 GIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFD------CSADVVTFTSLIDGYCRA 332

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+   + +  MK +N++P V TY  LI+  C  N  NEA   L ++ +  + P    +
Sbjct: 333 GQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPKPFMY 392

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK G +DE + +L+ M  +  +P+  TF+ L+ G C+ GR+  A  +F  M +
Sbjct: 393 NPVIDGFCKAGNVDEGNVILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLA 452

Query: 387 MGC 389
             C
Sbjct: 453 TRC 455



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 155/290 (53%), Gaps = 7/290 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           +++NLL   L +  H+D V  +F  + S G  PD      L+    +         +L  
Sbjct: 74  STYNLLMRSLCQMGHHDLVNIVFDYMGSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAE 133

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +       ++  + +L+  L  ++++ EA  LF +       P+  T++ LI GLCR G 
Sbjct: 134 VQGKEVRINSFVYNNLLSVLVKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGG 193

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINP 286
              A  +F++M +    FG  C P+ VTY T+I+GLCK   V +  ELF +++ + + +P
Sbjct: 194 VDRAFEVFKDMES----FG--CLPDVVTYNTLINGLCKANEVQRGCELFKEIQSRSDCSP 247

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTY S+I GFC +    EA+ L  EMM  G+QP+V+TFNV++D   K G + EA  + 
Sbjct: 248 DIVTYTSIISGFCKSGKMKEASNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMY 307

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M     + +  TF++L+DG+C  G+VNH  + +  M++     TV++Y
Sbjct: 308 RKMAYFDCSADVVTFTSLIDGYCRAGQVNHGLKFWNVMKTRNVSPTVYTY 357



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 6/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FDYM       P       L   +A+   +D V  L   +    +  + + YN L++  
Sbjct: 95  VFDYM-GSDGHLPDSKLLGFLVTWMAQASDFDMVKKLLAEVQGKEVRINSFVYNNLLSVL 153

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K  +V     +    L     PD   F  LI+GLC    +  A  +F  +++FGC P+V
Sbjct: 154 VKQNQVHEAIYLFKEYLVMQSPPDTWTFNILIRGLCRVGGVDRAFEVFKDMESFGCLPDV 213

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+TLINGLC+         LF+E+ + +      C P+ VTYT+II G CK G + +A
Sbjct: 214 VTYNTLINGLCKANEVQRGCELFKEIQSRSD-----CSPDIVTYTSIISGFCKSGKMKEA 268

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             LF +M    I P+V+T+N LI GF    +  EA  +  +M       DVVTF  ++D 
Sbjct: 269 SNLFEEMMRSGIQPNVITFNVLIDGFGKIGNIAEAEAMYRKMAYFDCSADVVTFTSLIDG 328

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C+ G+++   +   +M  R V+P   T++ L++  C   R+N A++    +++      
Sbjct: 329 YCRAGQVNHGLKFWNVMKTRNVSPTVYTYAVLINALCKENRLNEARDFLGQIKNSSIIPK 388

Query: 393 VFSY 396
            F Y
Sbjct: 389 PFMY 392


>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
 gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
          Length = 570

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 157/290 (54%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  +   LAK K     ++L +++ + G  P + TYN L+N  CKMGR+     +L 
Sbjct: 165 IHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 224

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I+ +  TPD V +TSLI GL  E R  EA  LF ++   G   + + Y+ LI GL + G
Sbjct: 225 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAG 284

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A ++++ M +        C P+ VT +T+IDGLCK G +  A  +F  M+ + + P
Sbjct: 285 KIPQASSVYKTMTSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAP 338

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + V Y++LIHG C A   + A  +L +M      PD +T+N+++D LCK+G ++ A    
Sbjct: 339 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 398

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M+  G  P+  T++ L+ GFC  G  + A  +F  M S  C   V +Y
Sbjct: 399 DEMLEAGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTY 448



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 135/264 (51%), Gaps = 7/264 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           S++K + S G  PD+ T + +I+  CK GR+     +   +      P+ V +++LI GL
Sbjct: 291 SVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 350

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   ++  A  +  ++K   C P+ ITY+ LI+GLC++G    A   F+EM         
Sbjct: 351 CKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAG----- 405

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            CKP+  TY  ++ G CK G  D A  +F  M   + +P+VVTY +LI G C      +A
Sbjct: 406 -CKPDVYTYNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKA 464

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           +     M ++G  PD   ++ ++D LCK+GK++    L + M   GV  N+ T + L+  
Sbjct: 465 SLYFQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFH 523

Query: 368 FCLTGRVNHAKELFVSMESMGCKH 391
            C   RV+ A  LF ++   G  H
Sbjct: 524 LCKANRVDEAVSLFNAIRKEGMPH 547



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/323 (30%), Positives = 155/323 (47%), Gaps = 44/323 (13%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR------------- 157
           N L    A+TK +    +L K   +T   PD+ T+N+LI  +C + R             
Sbjct: 63  NALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYC-LAREPEEAFAVIREME 121

Query: 158 --------------VSHGFVVLGRILRSC----------FTPDAVAFTSLIKGLCAESRI 193
                         V HG    G++L +            T D   +T+++  L    +I
Sbjct: 122 EDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKI 181

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            +A AL  K+ A GC P + TY+ L+NGLC+ G    A++L  ++ + NG     C P+ 
Sbjct: 182 QDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NG-----CTPDV 235

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTYT++IDGL KE    +A +LF +M  + +  D V Y +LI G   A    +A+ +   
Sbjct: 236 VTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKT 295

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  QG  PDVVT + ++D LCK G++  A R+ + M  RG+ PN   +S L+ G C   +
Sbjct: 296 MTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARK 355

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           ++ A E+   M+   C     +Y
Sbjct: 356 MDCALEMLAQMKKAFCTPDTITY 378



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 142/280 (50%), Gaps = 12/280 (4%)

Query: 113 LFGCLAKTKHYDTVLSLFKRLNST--GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           +F CL   K  D    LF+ L+S   G    ++T N L++ F +  R      +L   L 
Sbjct: 31  IFQCL---KDADLAWELFQCLSSPRFGFQHSVHTGNALLDVFARTKRHREAGNLLKNELA 87

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHTI 229
           + F PD   +  LI G C      EA A+  +++  +G  P++ T++ +++GLC++G  +
Sbjct: 88  TTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVL 147

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A++ FE     NG     C  +  TYT I+D L K   +  A  L  ++      P + 
Sbjct: 148 AAMDHFETTTT-NG-----CTIDIHTYTAIVDWLAKNKKIQDAVALMEKITANGCTPTIA 201

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+L++G C      EA  LL +++D G  PDVVT+  ++D L K  +  EA +L + M
Sbjct: 202 TYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEM 261

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            LRG+  +T  ++ L+ G    G++  A  ++ +M S GC
Sbjct: 262 ALRGLVLDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGC 301



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 126/285 (44%), Gaps = 17/285 (5%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           V D  +L   +   CK+   G I A     A  IF  M   R   P    ++ L   L K
Sbjct: 302 VPDVVTLSTMIDGLCKA---GRIGA-----AVRIFKSM-EARGLAPNEVVYSALIHGLCK 352

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
            +  D  L +  ++      PD  TYNILI+  CK G V         +L +   PD   
Sbjct: 353 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYT 412

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +  L+ G C       A  +F  + +  C PNV+TY TLI+GLC+      A   F+ M 
Sbjct: 413 YNILVSGFCKAGNTDAACGVFDDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMK 472

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C P++  Y++++DGLCK G ++    LF +M+   +  +  T   LI   C
Sbjct: 473 ERG------CPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLC 525

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            AN  +EA  L   +  +G+ P    +N I+  L K+ K++  +R
Sbjct: 526 KANRVDEAVSLFNAIRKEGM-PHPYAYNSIISTLIKSAKVNPCTR 569


>gi|42408236|dbj|BAD09393.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|125601932|gb|EAZ41257.1| hypothetical protein OsJ_25765 [Oryza sativa Japonica Group]
          Length = 798

 Score =  183 bits (464), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 182/345 (52%), Gaps = 10/345 (2%)

Query: 58  LTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL 117
           L+  D   + +F   + +   +        + A   FD +L+ RP+   +   N      
Sbjct: 6   LSAPDGTKVSRFNLMKLQGRQEAAAAGTDSHHAHHAFDELLH-RPTTSSIVDLNRALSDA 64

Query: 118 AKTKHYDTV-LSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
           A+  H   V +SLF+R+       + P+L TY+++I+C  ++G +   F  LGR++RS +
Sbjct: 65  AR--HSPAVAISLFRRMVMVARPKVPPNLITYSVVIDCCSRVGHLDLAFAALGRVIRSGW 122

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           T +A+ F+ L+K LC + R  EA  +   ++   GC PNV +Y+ L+ GLC    +  AL
Sbjct: 123 TAEAITFSPLLKALCDKKRTSEAMDIALRRMPVLGCTPNVFSYTILLKGLCDENRSQQAL 182

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF-VDKAKELFLQMKDKNINPDVVTY 291
           +L   M   +   G    P+ V+Y T+I+GL +EG  +D A  LF QM D+ ++PDVVTY
Sbjct: 183 HLLHTMMVADDTRGGY-PPDVVSYNTVINGLLREGRQLDTAYHLFDQMLDQGLSPDVVTY 241

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           NS+I     A   ++A  +L+ M+  G  P+ +T N ++   C +GK ++A  + + M  
Sbjct: 242 NSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNSLLHGYCSSGKPNDAIGVFKRMCR 301

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            GV P+  T++TLM   C  GR   A+++F SM   G K    +Y
Sbjct: 302 DGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRGHKPNSATY 346



 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/321 (32%), Positives = 160/321 (49%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN+L G   K    D  + LF ++   GL PD  TY I+++  C +G+V      
Sbjct: 376 PDHYIFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQ 435

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            GR++    TPDAV F +LI GLCA  +  +A  L  ++   G  PN I ++TL+N LC+
Sbjct: 436 FGRLISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCK 495

Query: 225 TGHTIVALNLFEEMANGNGKFGVV-----------------------------CKPNTVT 255
            G    A N+F+ M   + +  V+                              KPN VT
Sbjct: 496 EGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVT 555

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+I+G CK G ++ A  LF QM  K +NP +VTY++++ G   A     A  L + M+
Sbjct: 556 YNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLWMI 615

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G++ D+ T+N+I+  LC+N   D+A R+ + + L   +    TF+ ++D     GR +
Sbjct: 616 KSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDALLKGGRHD 675

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            AK+LF S+ + G    V +Y
Sbjct: 676 EAKDLFASLLARGLVPNVVTY 696



 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/313 (34%), Positives = 162/313 (51%), Gaps = 17/313 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-----CLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           EA  IFD M+     P   T   LL G      L K  H      L   +   G+ PD Y
Sbjct: 326 EARKIFDSMVKRGHKPNSATYGTLLHGYATEGSLVKMHH------LLDMMVRNGIQPDHY 379

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            +NILI  + K G+V    ++  ++ R    PD V +  ++  LC   ++ +A A F +L
Sbjct: 380 IFNILIGTYTKHGKVDDAMLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRL 439

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            + G  P+ + +  LI+GLC       A  L  EM  G G    +C PN + + T+++ L
Sbjct: 440 ISEGLTPDAVVFRNLIHGLCARDKWDKAEELAVEMI-GRG----IC-PNNIFFNTLLNHL 493

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CKEG V +AK +F  M   ++  DV+TYN+LI G+C     +EA  LL  M+  GV+P+ 
Sbjct: 494 CKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNE 553

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT+N +++  CKNG++++A  L   M  +GVNP   T+ST++ G     R   AKEL++ 
Sbjct: 554 VTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAKELYLW 613

Query: 384 MESMGCKHTVFSY 396
           M   G K  + +Y
Sbjct: 614 MIKSGIKFDIGTY 626



 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 103/339 (30%), Positives = 168/339 (49%), Gaps = 32/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ +FD ML+   SP  +T +N +   L+K +  D    +  R+   G  P+  T+N 
Sbjct: 220 DTAYHLFDQMLDQGLSPDVVT-YNSIISALSKARAMDKAAVVLVRMVKNGAMPNRITHNS 278

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C  G+ +    V  R+ R    PD   + +L+  LC   R MEA  +F  +   G
Sbjct: 279 LLHGYCSSGKPNDAIGVFKRMCRDGVEPDVFTYNTLMGYLCKNGRSMEARKIFDSMVKRG 338

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG----------------KFGVV--- 248
            KPN  TY TL++G    G ++V ++   +M   NG                K G V   
Sbjct: 339 HKPNSATYGTLLHGYATEG-SLVKMHHLLDMMVRNGIQPDHYIFNILIGTYTKHGKVDDA 397

Query: 249 -----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        P+TVTY  ++D LC  G VD A   F ++  + + PD V + +LIHG
Sbjct: 398 MLLFSKMRRQGLNPDTVTYGIVMDALCMVGKVDDAMAQFGRLISEGLTPDAVVFRNLIHG 457

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C  + W++A  L +EM+ +G+ P+ + FN +++ LCK G +  A  + +LM+   V  +
Sbjct: 458 LCARDKWDKAEELAVEMIGRGICPNNIFFNTLLNHLCKEGMVARAKNIFDLMVRVDVQRD 517

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++TL+DG+CL G+V+ A +L   M   G K    +Y
Sbjct: 518 VITYNTLIDGYCLHGKVDEAAKLLEGMVLDGVKPNEVTY 556



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/319 (25%), Positives = 139/319 (43%), Gaps = 30/319 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F  +++   +P  +   NL+ G  A+ K +D    L   +   G+ P+   +N 
Sbjct: 430 DDAMAQFGRLISEGLTPDAVVFRNLIHGLCARDK-WDKAEELAVEMIGRGICPNNIFFNT 488

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  CK G V+    +   ++R     D + + +LI G C   ++ EAA L   +   G
Sbjct: 489 LLNHLCKEGMVARAKNIFDLMVRVDVQRDVITYNTLIDGYCLHGKVDEAAKLLEGMVLDG 548

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
            KPN +TY+T+ING C+ G    A +LF +MA+     G+V                   
Sbjct: 549 VKPNEVTYNTMINGYCKNGRIEDAFSLFRQMASKGVNPGIVTYSTILQGLFQARRTAAAK 608

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      K +  TY  I+ GLC+    D A  +F  +   + + +  T+N +I   
Sbjct: 609 ELYLWMIKSGIKFDIGTYNIILLGLCQNNCTDDALRIFQNLYLIDFHLENRTFNIMIDAL 668

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                 +EA  L   ++ +G+ P+VVT+ ++M  L + G ++E   L   +   G   N+
Sbjct: 669 LKGGRHDEAKDLFASLLARGLVPNVVTYWLMMKSLIEQGLLEELDDLFLSLEKNGCTANS 728

Query: 359 STFSTLMDGFCLTGRVNHA 377
              + L+      G V  A
Sbjct: 729 RMLNALVGKLLQKGEVRKA 747


>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
 gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
          Length = 616

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     K       L + + +    + PD+ TY IL+N  C++G+V   F +
Sbjct: 269 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 328

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I+R  + PD +A+TSL+ GLC    I EA  L  ++   GC+  V+ YS+L++G CR
Sbjct: 329 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCR 388

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  +  EM + N        P   TY  ++ GL K+G + KA  L   +  +  
Sbjct: 389 AGNVHKAREILAEMVSIN------MVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGY 442

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYN+LI G C AN   EA  L  EM  +G  P+ VT   ++  LC+ G++D+A  
Sbjct: 443 VPDVVTYNTLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWS 502

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  M  +   PN   +++L+DG C + R++ A  +  +M   G     F+Y
Sbjct: 503 LVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAY 554



 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 168/312 (53%), Gaps = 12/312 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYT 144
           P++A  +F+ M + R  P  +T +N +   L K+ + +    L + +   G    PD+ T
Sbjct: 113 PDQAVKLFENMESSRVKPEIVT-YNTVISGLCKSGNLEKARELLEEMIRKGGKSAPDIVT 171

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           YN LIN F +  R+        ++  +   PD +    L+ G+C +  + EA  +   +K
Sbjct: 172 YNTLINAFYRASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMK 231

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G  P+VITY+++I+ LC  G  + A  + + M+         C P+ VT+ T++DG C
Sbjct: 232 LAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMS---------CSPDLVTFNTLLDGFC 282

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G + +A E+  +M  +NI PDV+TY  L++G C       A  LL E++ QG  PDV+
Sbjct: 283 KAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVI 342

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +  ++D LCK+G+++EA +L++ M +RG       +S+L+ G+C  G V+ A+E+   M
Sbjct: 343 AYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEM 402

Query: 385 ESMGCKHTVFSY 396
            S+     +F+Y
Sbjct: 403 VSINMVPPLFTY 414



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/338 (31%), Positives = 174/338 (51%), Gaps = 19/338 (5%)

Query: 61  KDRASLEQFLKERCKSSGQGDITAITPNEAF---------CIFDYMLNMRPSPPPLTSFN 111
           K R  LE+ +++  KS+    +T  T   AF         C F   +      P + + N
Sbjct: 150 KARELLEEMIRKGGKSAPD-IVTYNTLINAFYRASRIREACAFREKMKAAGINPDVLTCN 208

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           +L   + K    +  L +   +   G  PD+ TYN +I+  C  G+V     +L  +  S
Sbjct: 209 ILVSGICKDGDVEEALEILDGMKLAGPVPDVITYNSIIHALCVAGKVVEAAEILKTM--S 266

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           C +PD V F +L+ G C    +  A  +  ++      P+VITY+ L+NGLCR G   VA
Sbjct: 267 C-SPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVA 325

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             L EE+     + G +  P+ + YT+++DGLCK G +++A +L  +M  +     VV Y
Sbjct: 326 FYLLEEIV----RQGYI--PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMY 379

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           +SL+ G+C A + ++A  +L EM+   + P + T+N+++  L K+G + +A  L+  ++ 
Sbjct: 380 SSLVSGYCRAGNVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVA 439

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           RG  P+  T++TL+DG C   RV  A +L   M S GC
Sbjct: 440 RGYVPDVVTYNTLIDGLCKANRVREACDLADEMASRGC 477



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 102/298 (34%), Positives = 151/298 (50%), Gaps = 7/298 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A   FD+          + S+N L   L K+ H+     ++K L  +G  P+L T+ 
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI   CK G+       L  +      PD   F  LI GL  +    +A  LF  +++ 
Sbjct: 67  ILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESS 126

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             KP ++TY+T+I+GLC++G+   A  L EEM    GK      P+ VTY T+I+   + 
Sbjct: 127 RVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGK----SAPDIVTYNTLINAFYRA 182

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             + +A     +MK   INPDV+T N L+ G C   D  EA  +L  M   G  PDV+T+
Sbjct: 183 SRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMKLAGPVPDVITY 242

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           N I+  LC  GK+ EA+ +L+ M     +P+  TF+TL+DGFC  G +  A E+   M
Sbjct: 243 NSIIHALCVAGKVVEAAEILKTM---SCSPDLVTFNTLLDGFCKAGMLPRALEVLEEM 297



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/297 (31%), Positives = 153/297 (51%), Gaps = 10/297 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I D M    P P  +T  +++       K    V+   + L +    PDL T+N 
Sbjct: 221 EEALEILDGMKLAGPVPDVITYNSIIHALCVAGK----VVEAAEILKTMSCSPDLVTFNT 276

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G +     VL  + R    PD + +T L+ GLC   ++  A  L  ++   G
Sbjct: 277 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 336

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+VI Y++L++GLC++G    A  L +EM+         C+   V Y++++ G C+ G
Sbjct: 337 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRG------CRTGVVMYSSLVSGYCRAG 390

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V KA+E+  +M   N+ P + TYN ++ G       ++A  L+ +++ +G  PDVVT+N
Sbjct: 391 NVHKAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYN 450

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++D LCK  ++ EA  L + M  RG  PN  T  +++ G C  GRV+ A  L V M
Sbjct: 451 TLIDGLCKANRVREACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEM 507



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 132/260 (50%), Gaps = 6/260 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K+   +    L K ++  G    +  Y+ L++ +C+ G V     +
Sbjct: 339 PDVIAYTSLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREI 398

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P    +  ++ GL  +  I +A +L + L A G  P+V+TY+TLI+GLC+
Sbjct: 399 LAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCK 458

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A +L +EMA+        C PN VT  +++ GLC+ G VD A  L ++M  K  
Sbjct: 459 ANRVREACDLADEMASRG------CFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRH 512

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VV Y SLI G C ++  ++A  +L  M  QGV  D   +  ++  +   G++ EA  
Sbjct: 513 APNVVVYTSLIDGLCKSDRMDDACMVLDAMRGQGVALDDFAYRKLIVSMSHGGRVAEAMA 572

Query: 345 LLELMILRGVNPNTSTFSTL 364
           + + M+ RG  P+ ST  TL
Sbjct: 573 MYDEMVARGFLPDGSTSKTL 592



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 80/167 (47%), Gaps = 5/167 (2%)

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R+    +A+  F+     +G      K +  +Y  ++D L K G   +  +++  +    
Sbjct: 3   RSSRPDLAIQFFDWAGEQDGY-----KHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSG 57

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +P++VT+  LI G C A     A   L  + +  V PDV  FNV++  L K+G  D+A 
Sbjct: 58  CSPNLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAV 117

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +L E M    V P   T++T++ G C +G +  A+EL   M   G K
Sbjct: 118 KLFENMESSRVKPEIVTYNTVISGLCKSGNLEKARELLEEMIRKGGK 164



 Score = 45.8 bits (107), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 51/110 (46%)

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV +YN L+     +        +  +++  G  P++VTF +++   CK G+   A   L
Sbjct: 26  DVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMRALEFL 85

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +    V P+   F+ L+ G    G  + A +LF +MES   K  + +Y
Sbjct: 86  RALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLFENMESSRVKPEIVTY 135



 Score = 38.1 bits (87), Expect = 7.3,   Method: Compositional matrix adjust.
 Identities = 20/80 (25%), Positives = 39/80 (48%)

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G + DV ++N ++D L K+G      ++ + ++  G +PN  TF  L+ G C  G+   
Sbjct: 21  DGYKHDVHSYNHLLDILVKSGHHFRTGKVYKDLLHSGCSPNLVTFKILIRGNCKAGQAMR 80

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A E   +++       V+ +
Sbjct: 81  ALEFLRALDEFSVAPDVYIF 100


>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
          Length = 612

 Score =  182 bits (463), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/296 (34%), Positives = 156/296 (52%), Gaps = 7/296 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML  R   P + +FN L   + K    +   +L   +   G+ PD+YTY   I   
Sbjct: 264 VFDEMLR-RGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGL 322

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     +   +      P+ V  T+LI   C E  +     L  ++   G K ++
Sbjct: 323 CKTGRIQDAMEMFEEMCERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADL 382

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+ L+NG CR      A ++ EEM     K G+  KP+ VTYTT+IDG CKEG +D A
Sbjct: 383 VAYNALVNGFCRVRDMKAANDIVEEMR----KDGL--KPDKVTYTTLIDGCCKEGELDTA 436

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            E+  +M D+ +  D VTY +LI G   A    +A  +L EMM+ G+QPD  T+ +++D 
Sbjct: 437 MEMKQEMSDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDA 496

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            CKNG +    + L+ M  +G NP   T++ +M+GFC  G++ +A  L  +M ++G
Sbjct: 497 FCKNGDVKTGFKHLKEMQNKGKNPGIVTYNVVMNGFCSLGQMKNADMLLNAMLNIG 552



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/308 (26%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+  + ++L+    PP    FN+L   + ++    +  ++F  +   G+ P + T+N L
Sbjct: 225 EAYAFYLHLLDAG-VPPEARQFNMLMRDMIRSGKLASARNVFDEMLRRGVQPTVVTFNTL 283

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK   +++   + G + ++   PD   + + I+GLC   RI +A  +F ++   G 
Sbjct: 284 MSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDAMEMFEEMCERGL 343

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +  +TLI+  C+ G     L L  EMA          K + V Y  +++G C+   
Sbjct: 344 NPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRG------VKADLVAYNALVNGFCRVRD 397

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A ++  +M+   + PD VTY +LI G C   + + A  +  EM D+GV  D VT+  
Sbjct: 398 MKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTA 457

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K G+  +A R+L  M+  G+ P+ +T++ ++D FC  G V    +    M++ G
Sbjct: 458 LISGLSKAGRSVDAERILCEMMEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 517

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 518 KNPGIVTY 525



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 92/347 (26%), Positives = 147/347 (42%), Gaps = 62/347 (17%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----------------LYT 144
           R SPP L    LL    +       V ++ K     GL PD                +  
Sbjct: 155 RDSPPRL--LPLLVSAASTDDPAPLVSAVAKVYADEGLLPDGCSLLLLALRRGIRVPMPA 212

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           ++ L+N   ++  V   +     +L +   P+A  F  L++ +    ++  A  +F ++ 
Sbjct: 213 WSDLMN---RLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRDMIRSGKLASARNVFDEML 269

Query: 205 AFGCKPNVITYSTL-----------------------------------INGLCRTGHTI 229
             G +P V+T++TL                                   I GLC+TG   
Sbjct: 270 RRGVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQ 329

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A+ +FEEM            PNTV  TT+ID  CKEG V    EL  +M  + +  D+V
Sbjct: 330 DAMEMFEEMCERG------LNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLV 383

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YN+L++GFC   D   AN ++ EM   G++PD VT+  ++D  CK G++D A  + + M
Sbjct: 384 AYNALVNGFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEM 443

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              GV  +  T++ L+ G    GR   A+ +   M   G +    +Y
Sbjct: 444 SDEGVALDDVTYTALISGLSKAGRSVDAERILCEMMEAGLQPDNTTY 490


>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 598

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/295 (31%), Positives = 158/295 (53%), Gaps = 12/295 (4%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P   P T+    F  + KT+    +L +   L  +G  PD+ TYN++I+ +CK G +++ 
Sbjct: 135 PDIIPCTTLIRGFCRMGKTRKAAKILEV---LEGSGAVPDVITYNVMISGYCKAGEINNA 191

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             VL R+     +PD V + ++++ LC   ++ +A  +  ++    C P+VITY+ LI  
Sbjct: 192 LSVLDRM---SVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEA 248

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            CR      A+ L +EM +        C P+ VTY  +++G+CKEG +D+A +    M  
Sbjct: 249 TCRDSGVGQAMKLLDEMRDRG------CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 302

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+V+T+N ++   C    W +A  LL +M+ +G  P VVTFN++++ LC+ G +  
Sbjct: 303 SGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGR 362

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  +LE M   G  PN+ +++ L+ GFC   +++ A E    M S GC   + +Y
Sbjct: 363 AIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTY 417



 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/328 (30%), Positives = 167/328 (50%), Gaps = 15/328 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            ++  C+ SG G        +A  + D M + R   P + ++N+L   + K    D  + 
Sbjct: 245 LIEATCRDSGVG--------QAMKLLDEMRD-RGCTPDVVTYNVLVNGICKEGRLDEAIK 295

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
               + S+G  P++ T+NI++   C  GR      +L  +LR  F+P  V F  LI  LC
Sbjct: 296 FLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLC 355

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +  +  A  +  K+   GC+PN ++Y+ L++G C+      A+   E M +        
Sbjct: 356 RKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRG------ 409

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ VTY T++  LCK+G V+ A E+  Q+  K  +P ++TYN++I G   A    +A 
Sbjct: 410 CYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAI 469

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  + ++PD +T++ ++  L + GK+DEA +        GV PN  TF+++M G 
Sbjct: 470 KLLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGL 529

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C T + + A +  V M + GCK T  SY
Sbjct: 530 CKTRQTDRAIDFLVYMINRGCKPTETSY 557



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 9/287 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 297 LNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCR 356

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     +L ++ +    P+++++  L+ G C E ++  A     ++ + GC P+++T
Sbjct: 357 KGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVT 416

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+T++  LC+ G    A+ +  ++++        C P  +TY T+IDGL K G   KA +
Sbjct: 417 YNTMLTALCKDGKVEDAVEILNQLSSKG------CSPVLITYNTVIDGLAKAGKTGKAIK 470

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K++ PD +TY+SL+ G       +EA     E    GV+P+ VTFN IM  LC
Sbjct: 471 LLDEMRAKDLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLC 530

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           K  + D A   L  MI RG  P  ++++ L++G    G    A EL 
Sbjct: 531 KTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEALELL 577



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/267 (32%), Positives = 140/267 (52%), Gaps = 10/267 (3%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           F   NS+ +  D+ + N L     + G +  GF  L  ++     PD +  T+LI+G C 
Sbjct: 91  FSSANSSFVLEDVESNNHLRQ-LVRTGELEEGFKFLENMVYHGNVPDIIPCTTLIRGFCR 149

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             +  +AA +   L+  G  P+VITY+ +I+G C+ G    AL++ + M+          
Sbjct: 150 MGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS---------V 200

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+ VTY TI+  LC  G + +A E+  +M  ++  PDV+TY  LI   C  +   +A  
Sbjct: 201 SPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMK 260

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL EM D+G  PDVVT+NV+++ +CK G++DEA + L  M   G  PN  T + ++   C
Sbjct: 261 LLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMC 320

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            TGR   A++L   M   G   +V ++
Sbjct: 321 STGRWMDAEKLLADMLRKGFSPSVVTF 347



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 142/257 (55%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 342 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAIEY 401

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L R++ R C+ PD V + +++  LC + ++ +A  +  +L + GC P +ITY+T+I+GL 
Sbjct: 402 LERMVSRGCY-PDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLA 460

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L +EM   +       KP+T+TY++++ GL +EG VD+A + F + +   
Sbjct: 461 KAGKTGKAIKLLDEMRAKD------LKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMG 514

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+ VT+NS++ G C     + A   L+ M+++G +P   ++ ++++ L   G   EA 
Sbjct: 515 VRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEAL 574

Query: 344 RLLELMILRGVNPNTST 360
            LL  +  +G+   +S 
Sbjct: 575 ELLNELCNKGLMKRSSA 591


>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Glycine max]
          Length = 703

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 156/295 (52%), Gaps = 9/295 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  TS + L      T H     S+   +   G   ++Y  N+++  FC+ G+      +
Sbjct: 75  PRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFCRSGQCDKAMSL 134

Query: 165 LGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLING 221
             ++ R+  C  PD V + +L+ G C   R+ EA  LF  +K  G C+PN++TYS LI+ 
Sbjct: 135 FSQMKRNYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVLIDC 194

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C++G     L L EEM           K +   Y+++I   C EG ++  +ELF +M  
Sbjct: 195 YCKSGEVGEGLGLLEEMEREG------LKADVFVYSSLISAFCGEGDIETGRELFDEMLR 248

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + ++P+VVTY+ L+ G      W EA+ +L +M  +GV+PDVV + V+ D LCKNG+  +
Sbjct: 249 RKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLADGLCKNGRAGD 308

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A ++L+LM+ +G  P T T++ +++G C   R++ A  +   M   G K    +Y
Sbjct: 309 AIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDAVTY 363



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/319 (31%), Positives = 153/319 (47%), Gaps = 21/319 (6%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CK+   GD        A  + D M+     P  LT +N++   L K    D    + + +
Sbjct: 301 CKNGRAGD--------AIKVLDLMVQKGEEPGTLT-YNVVVNGLCKEDRMDDAFGVVEMM 351

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVAFTSLIKGLCAES 191
              G  PD  TYN L+   C  G++     +   +L   F   PD     +LI+GLC E 
Sbjct: 352 VKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSEKFHVKPDVFTCNNLIQGLCKEG 411

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC-- 249
           R+ +AA + + +   G + N++TY+ LI G       I AL L+        K+ V    
Sbjct: 412 RVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLW--------KYAVESGF 463

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN++TY+ +I+GLCK   +  A+ LF +MKD  I P V+ YN+L+   C  +   +A  
Sbjct: 464 SPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARS 523

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  EM +     DVV+FN+I+D   K G +  A  LL  M +  + P+  TFS L++ F 
Sbjct: 524 LFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVTFSILINRFS 583

Query: 370 LTGRVNHAKELFVSMESMG 388
             G ++ A  L+  M S G
Sbjct: 584 KLGMLDEAMGLYEKMVSCG 602



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 158/319 (49%), Gaps = 10/319 (3%)

Query: 78  GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           G+GDI   T  E   +FD ML  + SP  +T ++ L   L +T  +     + K + + G
Sbjct: 232 GEGDIE--TGRE---LFDEMLRRKVSPNVVT-YSCLMQGLGRTGRWREASEMLKDMTARG 285

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD+  Y +L +  CK GR      VL  +++    P  + +  ++ GLC E R+ +A 
Sbjct: 286 VRPDVVAYTVLADGLCKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAF 345

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            +   +   G KP+ +TY+TL+ GLC  G    A++L++ + +   KF V  KP+  T  
Sbjct: 346 GVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEAMDLWKLLLSE--KFHV--KPDVFTCN 401

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +I GLCKEG V  A  +   M +  +  ++VTYN LI G+  A    EA  L    ++ 
Sbjct: 402 NLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVES 461

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P+ +T++V+++ LCK   +  A  L   M   G+ P    ++ LM   C    +  A
Sbjct: 462 GFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQA 521

Query: 378 KELFVSMESMGCKHTVFSY 396
           + LF  M ++     V S+
Sbjct: 522 RSLFQEMRNVNHNVDVVSF 540



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTY 145
           ++AF + + M+     P  +T   LL G     K ++  + L+K L S      PD++T 
Sbjct: 342 DDAFGVVEMMVKKGKKPDAVTYNTLLKGLCGAGKIHEA-MDLWKLLLSEKFHVKPDVFTC 400

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N LI   CK GRV     +   ++      + V +  LI+G  A  +++EA  L+     
Sbjct: 401 NNLIQGLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVE 460

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  PN +TYS +INGLC+     VA  LF +M +         +P  + Y  ++  LC+
Sbjct: 461 SGFSPNSMTYSVMINGLCKMQMLSVARGLFCKMKDSG------IRPTVIDYNALMTSLCR 514

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           E  +++A+ LF +M++ N N DVV++N +I G   A D   A  LL EM    + PD VT
Sbjct: 515 EDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKELLSEMFMMDLVPDAVT 574

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           F+++++   K G +DEA  L E M+  G  P    F +L+ G+ L G       L   M
Sbjct: 575 FSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGLKGETEKIISLLHQM 633



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 64/138 (46%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L +    +   SLF+ + +     D+ ++NI+I+   K G V     +
Sbjct: 500 PTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGTLKAGDVKSAKEL 559

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PDAV F+ LI        + EA  L+ K+ + G  P V+ + +L+ G   
Sbjct: 560 LSEMFMMDLVPDAVTFSILINRFSKLGMLDEAMGLYEKMVSCGHVPGVVVFDSLLKGYGL 619

Query: 225 TGHTIVALNLFEEMANGN 242
            G T   ++L  +MA+ +
Sbjct: 620 KGETEKIISLLHQMADKD 637


>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
 gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
          Length = 573

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 159/294 (54%), Gaps = 7/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P   ++N++   L K +       + K + +   + PDL TY+ +IN FCK G +     
Sbjct: 39  PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98

Query: 164 VLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           +L  ++ R    PD V +TS++ GLC + ++  A  +  ++K  G +P+  T+S LI G 
Sbjct: 99  ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGW 158

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C       AL L++E+   +       KP+ VTYT +IDG CK G ++KA ++   M+ +
Sbjct: 159 CNARKVDEALKLYKEILTSSS-----WKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGR 213

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+VVTY+SL+HG C A D ++A  L   M  +G  P+VVT+  ++  LC   K+D A
Sbjct: 214 KCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAA 273

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L++ M      P+T +++ L+DG+C  GR+  AK+LF  M +  C     +Y
Sbjct: 274 RLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITY 327



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 151/288 (52%), Gaps = 5/288 (1%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + +++ L   L K    D  L LF+R+ S G  P++ TY  LI+  C   
Sbjct: 209 VMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAH 268

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +V    +++  +  +C  PD V++ +L+ G C   RI EA  LF ++    C P+ ITY+
Sbjct: 269 KVDAARLLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYT 328

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            L+ G C       A  L E M    G       P+ VTY+ ++ G  +     +A E  
Sbjct: 329 CLVRGFCNASRLEEARFLLENMKTAAG-----IDPDVVTYSIVVAGYSRAKRFVEAAEFI 383

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M  +N+ P+ VTY+SLI G C A   + A  +L  M+++ V+P V TFN ++  LC+ 
Sbjct: 384 QEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRL 443

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           G MDEA +LL  M   G+ P   T++TL++GF  TGR+  A ELF  M
Sbjct: 444 GDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGFSRTGRMEIAYELFEVM 491



 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 171/336 (50%), Gaps = 43/336 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR-LNSTGLFPDLYTYNILINCFCKMG 156
           + ++   P   +F+ L       +  D  L L+K  L S+   PD+ TY  LI+ FCK G
Sbjct: 139 MKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSG 198

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     +LG +      P+ V ++SL+ GLC    + +A  LF ++ + GC PNV+TY+
Sbjct: 199 NLEKAMKMLGVMEGRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYT 258

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLI+GLC       A  L +EM          C P+TV+Y  ++DG C+ G +++AK+LF
Sbjct: 259 TLIHGLCAAHKVDAARLLMDEMT------ATCCPPDTVSYNALLDGYCRLGRIEEAKQLF 312

Query: 277 LQMKDKN------------------------------------INPDVVTYNSLIHGFCY 300
            +M  K+                                    I+PDVVTY+ ++ G+  
Sbjct: 313 KEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSR 372

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           A  + EA   + EM+ + V P+ VT++ ++D LCK G++D A  +L+ M+ + V P+  T
Sbjct: 373 AKRFVEAAEFIQEMIARNVAPNAVTYSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGT 432

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           F++++   C  G ++ A +L V+M + G +  + +Y
Sbjct: 433 FNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTY 468



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 167/312 (53%), Gaps = 9/312 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYN 146
           ++A+ +   M + +   P L +++ +     K    D    + + +    G+ PD+ TY 
Sbjct: 58  SKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVTYT 117

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK-LKA 205
            +++  C+ G++     ++  +      PD   F++LI G C   ++ EA  L+ + L +
Sbjct: 118 SVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLYKEILTS 177

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
              KP+V+TY+ LI+G C++G+   A+ +   M       G  C PN VTY++++ GLCK
Sbjct: 178 SSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVME------GRKCVPNVVTYSSLLHGLCK 231

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +D+A +LF +M  K   P+VVTY +LIHG C A+  + A  L+ EM      PD V+
Sbjct: 232 AGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGLCAAHKVDAARLLMDEMTATCCPPDTVS 291

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D  C+ G+++EA +L + M  +   P+  T++ L+ GFC   R+  A+ L  +M+
Sbjct: 292 YNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGFCNASRLEEARFLLENMK 351

Query: 386 -SMGCKHTVFSY 396
            + G    V +Y
Sbjct: 352 TAAGIDPDVVTY 363



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/176 (38%), Positives = 109/176 (61%), Gaps = 9/176 (5%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P V+T++ +I+G C+      AL  FE+M            PN  TY  +++GLCK  
Sbjct: 3   CQPTVVTWTIIIDGFCKANQLKQALACFEKMRE-------FVAPNERTYNVVVNGLCKAR 55

Query: 268 FVDKAKELFLQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVT 325
              KA E+  +M+D K++ PD+VTY+++I+GFC   + + A  +L EM+ + G+ PDVVT
Sbjct: 56  LTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACEILREMVTRDGIAPDVVT 115

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +  ++D LC++GKMD A  ++  M L+GV P+  TFS L+ G+C   +V+ A +L+
Sbjct: 116 YTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITGWCNARKVDEALKLY 171



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 60/227 (26%), Positives = 102/227 (44%), Gaps = 5/227 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + M       P + +++++    ++ K +       + + +  + P+  TY+ 
Sbjct: 341 EEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPNAVTYSS 400

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK GRV H   VL  ++     P    F S+I  LC    + EA  L   + A G
Sbjct: 401 LIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHG 460

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV---TYTTIIDGLC 264
            +P ++TY+TL+ G  RTG   +A  LFE M     K       N V    ++ +I GLC
Sbjct: 461 LEPGMVTYTTLLEGFSRTGRMEIAYELFEVMRKKAKKSSSA--ANLVPEQAFSALIRGLC 518

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           K   +DKA  +  +++ +   P      +++ G   A    EA  L+
Sbjct: 519 KAREIDKAMAVVEELRSRECEPAEEDCLAIVDGLLRAGRTEEAGKLI 565


>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 156/302 (51%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +    LFK +  TG+ PD+YTY ILI+CF K G +      
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R    P  V +T+LI       ++  A  LF  + A GC PNVITY+ LI+G C+
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 225 TGHTIVALNLFEEMANGNG----------KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           +G+   A  ++  M               K  V  KPN VTY  ++DGLCK   V  A++
Sbjct: 607 SGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARD 666

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y++LI GFC A   +EA  +  +M+++G  P+V T++ ++D L 
Sbjct: 667 LLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLF 726

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+ ++D   ++L  M+     PN   ++ ++DG     + + A +L + ME  GCK  V 
Sbjct: 727 KDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVV 786

Query: 395 SY 396
           +Y
Sbjct: 787 TY 788



 Score =  140 bits (353), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K K       LF+ + + G FP++ TY  LI+ +CK G +     +
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 165 LGRILRSCFTPDA----------------VAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
             R+      PD                 V + +L+ GLC   ++ +A  L   +   GC
Sbjct: 617 YARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN I Y  LI+G C+      A  +F +M            PN  TY+++ID L K+  
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVERG------YNPNVYTYSSLIDRLFKDKR 730

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D   ++  +M + +  P++V Y  +I G       +EA  L++ M ++G +P+VVT+  
Sbjct: 731 LDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTA 790

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D   K GK+D+   L   M  +G  PN  T++ L++  C TG ++ A  L   M+   
Sbjct: 791 MIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTY 850

Query: 389 CKHTVFSY 396
               V SY
Sbjct: 851 WPKHVSSY 858



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 136/320 (42%), Gaps = 45/320 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    ++ L     K    D    +F ++   G  P++YTY+ LI+   K  R+     V
Sbjct: 678 PNTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L +   P+ V +T +I GL   ++  EA  L   ++  GCKPNV+TY+ +I+G  +
Sbjct: 738 LSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGK 797

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G     L LF EM +        C PN VTYT +I+  C  G +D+A  L  +MK    
Sbjct: 798 AGKVDKCLELFREMGSKG------CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYW 851

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG------- 337
              V +Y  +I G  Y  ++  +  LL E+   G  P ++ + V++D   K G       
Sbjct: 852 PKHVSSYCKVIEG--YKREFILSLGLLEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALE 909

Query: 338 ------------------------------KMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                                         K+D A  L   MI  GV P+  TF  L+ G
Sbjct: 910 LHKEVISASMSMTAKKNLYTSLIYSFSYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMG 969

Query: 368 FCLTGRVNHAKELFVSMESM 387
                R   A +L  S+  M
Sbjct: 970 LIRVRRWEEALQLSDSLCQM 989



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 153/362 (42%), Gaps = 27/362 (7%)

Query: 44  SDPTTTAKL--KESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           +D   TA+L  +E   L +  D  +L  F +  CK     +  ++   E F         
Sbjct: 254 ADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFV-------- 305

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----KMG 156
               P    +N +   L +   ++  +    R+ ST   P++ TY IL+ C C    ++G
Sbjct: 306 ----PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL-CGCLNKKQLG 360

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R      ++  I   C+ P    F SL+   C       A  L  K++   CKP  + Y+
Sbjct: 361 RCKRILSMM--IAEGCY-PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYN 417

Query: 217 TLINGLCRTGHTI--VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
            LI  +C  G     V   L E+  N     G V   N V   +    LC  G  +KA +
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVL--NKVNVVSFARCLCGFGKFEKAYK 475

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +  +M      PD  TY+ +I   C A+    A  L  EM   GV PDV T+ +++D   
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G + +A   L+ M+  G  P   T++TL+  +    +V+ A ELF  M + GC   V 
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 395 SY 396
           +Y
Sbjct: 596 TY 597



 Score = 96.3 bits (238), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 30/287 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M+  R   P + +++ L   L K K  D VL +  ++      P++  Y  
Sbjct: 697 DEAQEVFHKMVE-RGYNPNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTE 755

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   K+ +    + ++  +      P+ V +T++I G     ++ +   LF ++ + G
Sbjct: 756 MIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKG 815

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV--VCK--------------- 250
           C PN +TY+ LIN  C TGH   A  L EEM        V   CK               
Sbjct: 816 CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGL 875

Query: 251 ----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT--YNSLIHGF 298
                     P  + Y  +ID   K G ++ A EL  ++   +++       Y SLI+ F
Sbjct: 876 LEEVEKNGSAPTILLYKVLIDNFVKAGRLEVALELHKEVISASMSMTAKKNLYTSLIYSF 935

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            YA+  + A  L  +M+  GV PD+ TF  ++  L +  + +EA +L
Sbjct: 936 SYASKIDHAFELFYDMIRDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 125/315 (39%), Gaps = 50/315 (15%)

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++  L    RL   G  P   TYN L+  F +  ++    +V   +     + D      
Sbjct: 222 WNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGF 281

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
             + LC   +  EA +L  K       PN I Y+ +I+GLC       A++    M + +
Sbjct: 282 FAQALCKVGKWREALSLIEKEDFV---PNTILYNKMISGLCEASFFEEAMDFLNRMRSTS 338

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                 C PN  TY  ++ G   +  + + K +   M  +   P    +NSL+H +C ++
Sbjct: 339 ------CIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSD 392

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-------------------------- 336
           D++ A  LL +M     +P  V +N+++  +C                            
Sbjct: 393 DFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVL 452

Query: 337 ---------------GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
                          GK ++A +++  M+  G  P+TST+S ++   C   RV +A  LF
Sbjct: 453 NKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLF 512

Query: 382 VSMESMGCKHTVFSY 396
             M+  G    V++Y
Sbjct: 513 KEMKGTGVVPDVYTY 527



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 55/227 (24%), Positives = 101/227 (44%), Gaps = 10/227 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++  +     K    D  L LF+ + S G  P+  TY +LIN  C  G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +   + +L  + ++ +     ++  +I+G   E   + +  L  +++  G  P ++ Y 
Sbjct: 835 HLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKRE--FILSLGLLEEVEKNGSAPTILLYK 892

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G   VAL L +E+ + +    +  K N   YT++I        +D A ELF
Sbjct: 893 VLIDNFVKAGRLEVALELHKEVISAS--MSMTAKKN--LYTSLIYSFSYASKIDHAFELF 948

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             M    + PD+ T+  L+ G      W EA    +++ D   Q D+
Sbjct: 949 YDMIRDGVIPDLGTFVHLLMGLIRVRRWEEA----LQLSDSLCQMDI 991



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+  C       A     +LK FG KP  +TY+ L+    R      A  +  EM+   
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS--- 268

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            + G+     T+ +      LCK G   K +E    ++ ++  P+ + YN +I G C A+
Sbjct: 269 -ELGLSMDEFTLGF--FAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEAS 322

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
            + EA   L  M      P+V T+ +++       ++    R+L +MI  G  P+ + F+
Sbjct: 323 FFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFN 382

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +L+  +C +   ++A +L   ME   CK
Sbjct: 383 SLVHAYCKSDDFSYAYKLLKKMEKCECK 410


>gi|297737176|emb|CBI26377.3| unnamed protein product [Vitis vinifera]
          Length = 572

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 98/260 (37%), Positives = 140/260 (53%), Gaps = 7/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD  T   L+        +     +   +       DA  +  LI GLC   +   A
Sbjct: 72  GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTEKGLFGDAKTYGILINGLCKARKTGLA 131

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  K+K   CK +V TY  +I+ LC+ G T  AL++F EM       G    P+ V Y
Sbjct: 132 IKLHEKMKG-NCKGDVFTYGMIIDSLCKDGMTTEALDMFSEM------IGAGILPDVVVY 184

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           ++++DGLC+ G + +A E F +M+ + I+ DV TYNSLIHG   A  W E    L  M+D
Sbjct: 185 SSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVTWFLNLMVD 244

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  PD  TF +++D LCK GK+ EA ++LELM  +G  P+  T++TLM+G CL G++  
Sbjct: 245 RGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGKEPDILTYNTLMNGLCLVGQLED 304

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A +LF S+   G K  VFSY
Sbjct: 305 ATKLFESLADRGIKLNVFSY 324



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 160/285 (56%), Gaps = 17/285 (5%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++ +L   L K +     + L +++  N  G   D++TY ++I+  CK G  +    +  
Sbjct: 114 TYGILINGLCKARKTGLAIKLHEKMKGNCKG---DVFTYGMIIDSLCKDGMTTEALDMFS 170

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++ +   PD V ++SL+ GLC   R+ EA   F +++  G   +V TY++LI+GL R G
Sbjct: 171 EMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAG 230

Query: 227 ---HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                   LNL  +             P+  T+T +IDGLCKEG V +A+++   M  K 
Sbjct: 231 LWKEVTWFLNLMVDRG---------FSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKG 281

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD++TYN+L++G C      +A  L   + D+G++ +V ++N++++  CK+ K+DEA 
Sbjct: 282 KEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNILINGYCKDQKIDEAF 341

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           RL E M  +G+ P+T T++TL+   C +GRV  A++LFV M++ G
Sbjct: 342 RLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCG 386



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+     P  +   +L+ G L +       L  FK +   G+  D+YTYN L
Sbjct: 164 EALDMFSEMIGAGILPDVVVYSSLMDG-LCRFGRLKEALEFFKEMEGRGISADVYTYNSL 222

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+   + G        L  ++   F+PDA  FT LI GLC E ++ EA  +   +   G 
Sbjct: 223 IHGLSRAGLWKEVTWFLNLMVDRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMHHKGK 282

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+++TY+TL+NGLC  G    A  LFE +A+         K N  +Y  +I+G CK+  
Sbjct: 283 EPDILTYNTLMNGLCLVGQLEDATKLFESLADRG------IKLNVFSYNILINGYCKDQK 336

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  LF +M+ K + P  VTYN+LI   C +     A  L +EM   G    + T+ V
Sbjct: 337 IDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTYCV 396

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCKNG ++EA  L + +      PN   FS L+DG C  G++  A + F  +   G
Sbjct: 397 LLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISKNG 456

Query: 389 CKHTVFSY 396
            +    +Y
Sbjct: 457 LEPDTIAY 464



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 85/277 (30%), Positives = 145/277 (52%), Gaps = 7/277 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M + +   P + ++N L   L      +    LF+ L   G+  ++++YNIL
Sbjct: 269 EAQQILELM-HHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNVFSYNIL 327

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK  ++   F +   +      P  V + +LI  LC   R+  A  LF +++  G 
Sbjct: 328 INGYCKDQKIDEAFRLFEEMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQ 387

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
              + TY  L++GLC+ GH   A++LF+ +     K      PN   ++ ++DG+C+ G 
Sbjct: 388 FLKLSTYCVLLDGLCKNGHLEEAIDLFQSIKKTEHK------PNIEVFSILLDGMCRAGK 441

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A + F ++    + PD + YN LI+G C     +EA  LL +M ++G  PD +TFNV
Sbjct: 442 LEEAWKQFDEISKNGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKGCLPDSITFNV 501

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           I+  L K  ++ EA +LLE M  R  +P+ +  S L+
Sbjct: 502 IIQNLLKENEIHEAIQLLEEMRNRNFSPDEAVTSMLL 538



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 11/234 (4%)

Query: 88  NEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +EAF +F+    MRP    P   ++N L G L ++    T   LF  + + G F  L TY
Sbjct: 338 DEAFRLFE---EMRPKGLKPSTVTYNTLIGALCQSGRVRTAQKLFVEMQTCGQFLKLSTY 394

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            +L++  CK G +     +   I ++   P+   F+ L+ G+C   ++ EA   F ++  
Sbjct: 395 CVLLDGLCKNGHLEEAIDLFQSIKKTEHKPNIEVFSILLDGMCRAGKLEEAWKQFDEISK 454

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +P+ I Y+ LINGLC  G    A+ L  +M          C P+++T+  II  L K
Sbjct: 455 NGLEPDTIAYNILINGLCNKGMLSEAVKLLWQMEEKG------CLPDSITFNVIIQNLLK 508

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           E  + +A +L  +M+++N +PD    + L+    +   W+ A   L   + +GV
Sbjct: 509 ENEIHEAIQLLEEMRNRNFSPDEAVTSMLLCLASFDPQWHAALVSLPNALQKGV 562


>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Cucumis sativus]
          Length = 1000

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/302 (32%), Positives = 155/302 (51%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +    LFK +  TG+ PD+YTY ILI+CF K G +      
Sbjct: 487 PDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFSKAGIIKQAHNW 546

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R    P  V +T+LI       ++  A  LF  + A GC PNVITY+ LI+G C+
Sbjct: 547 LDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCK 606

Query: 225 TGHTIVALNLFEEMANGNG----------KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           +G+   A  ++  M               K  V  KPN VTY  ++DGLCK   V  A++
Sbjct: 607 SGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARD 666

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y++LI GFC A   +EA  +  +M++ G  P+V T++ ++D L 
Sbjct: 667 LLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLF 726

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+ ++D   ++L  M+     PN   ++ ++DG     + + A +L + ME  GCK  V 
Sbjct: 727 KDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVV 786

Query: 395 SY 396
           +Y
Sbjct: 787 TY 788



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K K       LF+ + + G FP++ TY  LI+ +CK G +     +
Sbjct: 557 PTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTALIDGYCKSGNIEKACQI 616

Query: 165 LGRILRSCFTPDA----------------VAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
             R+      PD                 V + +L+ GLC   ++ +A  L   +   GC
Sbjct: 617 YARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHKVKDARDLLETMFVDGC 676

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN I Y  LI+G C+      A  +F +M            PN  TY+++ID L K+  
Sbjct: 677 EPNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHG------YNPNVYTYSSLIDRLFKDKR 730

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D   ++  +M + +  P++V Y  +I G       +EA  L++ M ++G +P+VVT+  
Sbjct: 731 LDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTA 790

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D   K GK+D+   L   M  +G  PN  T++ L++  C TG ++ A  L   M+   
Sbjct: 791 MIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTY 850

Query: 389 CKHTVFSY 396
               V SY
Sbjct: 851 WPKHVSSY 858



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 82/282 (29%), Positives = 138/282 (48%), Gaps = 10/282 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    ++ L     K    D    +F ++   G  P++YTY+ LI+   K  R+     V
Sbjct: 678 PNTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPNVYTYSSLIDRLFKDKRLDLVLKV 737

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L +   P+ V +T +I GL   ++  EA  L   ++  GCKPNV+TY+ +I+G  +
Sbjct: 738 LSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEKGCKPNVVTYTAMIDGFGK 797

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G     L LF EM +        C PN VTYT +I+  C  G +D+A  L  +MK    
Sbjct: 798 AGKVDKCLELFREMGSKG------CAPNFVTYTVLINHCCATGHLDEAYALLEEMKQTYW 851

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              V +Y  +I G  Y  ++  +  LL E+   G  P ++ + V++D   K G+++ A  
Sbjct: 852 PKHVSSYCKVIEG--YKREFILSLGLLEEVEKNGSAPIILLYKVLIDNFVKAGRLEVALE 909

Query: 345 LLELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L + +I   ++     + +++L+  F    ++ HA ELF  M
Sbjct: 910 LHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDM 951



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/362 (27%), Positives = 153/362 (42%), Gaps = 27/362 (7%)

Query: 44  SDPTTTAKL--KESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           +D   TA+L  +E   L +  D  +L  F +  CK     +  ++   E F         
Sbjct: 254 ADKLDTAQLVHREMSELGLSMDEFTLGFFAQALCKVGKWREALSLIEKEDFV-------- 305

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----KMG 156
               P    +N +   L +   ++  +    R+ ST   P++ TY IL+ C C    ++G
Sbjct: 306 ----PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILL-CGCLNKKQLG 360

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R      ++  I   C+ P    F SL+   C       A  L  K++   CKP  + Y+
Sbjct: 361 RCKRILSMM--IAEGCY-PSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYN 417

Query: 217 TLINGLCRTGHTI--VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
            LI  +C  G     V   L E+  N     G V   N V   +    LC  G  +KA +
Sbjct: 418 ILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVL--NKVNVVSFARCLCGFGKFEKAYK 475

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +  +M      PD  TY+ +I   C A+    A  L  EM   GV PDV T+ +++D   
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G + +A   L+ M+  G  P   T++TL+  +    +V+ A ELF  M + GC   V 
Sbjct: 536 KAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVI 595

Query: 395 SY 396
           +Y
Sbjct: 596 TY 597



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 118/270 (43%), Gaps = 29/270 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L   L K K  D VL +  ++      P++  Y  +I+   K+ +    + +
Sbjct: 713 PNVYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKL 772

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +      P+ V +T++I G     ++ +   LF ++ + GC PN +TY+ LIN  C 
Sbjct: 773 MLMMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCA 832

Query: 225 TGHTIVALNLFEEMANGNGKFGV--VCK-------------------------PNTVTYT 257
           TGH   A  L EEM        V   CK                         P  + Y 
Sbjct: 833 TGHLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKREFILSLGLLEEVEKNGSAPIILLYK 892

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT--YNSLIHGFCYANDWNEANCLLIEMM 315
            +ID   K G ++ A EL  ++   +++       Y SLI+ F YA+    A  L  +M+
Sbjct: 893 VLIDNFVKAGRLEVALELHKEVISASMSMAAKKNLYTSLIYSFSYASKIGHAFELFYDMI 952

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
             GV PD+ TF  ++  L +  + +EA +L
Sbjct: 953 RDGVIPDLGTFVHLLMGLIRVRRWEEALQL 982



 Score = 92.0 bits (227), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 71/315 (22%), Positives = 125/315 (39%), Gaps = 50/315 (15%)

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++  L    RL   G  P   TYN L+  F +  ++    +V   +     + D      
Sbjct: 222 WNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMSELGLSMDEFTLGF 281

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
             + LC   +  EA +L  K       PN I Y+ +I+GLC       A++    M + +
Sbjct: 282 FAQALCKVGKWREALSLIEKEDFV---PNTILYNKMISGLCEASFFEEAMDFLNRMRSTS 338

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                 C PN  TY  ++ G   +  + + K +   M  +   P    +NSL+H +C ++
Sbjct: 339 ------CIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFNSLVHAYCKSD 392

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-------------------------- 336
           D++ A  LL +M     +P  V +N+++  +C                            
Sbjct: 393 DFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEMLSAGTVL 452

Query: 337 ---------------GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
                          GK ++A +++  M+  G  P+TST+S ++   C   RV +A  LF
Sbjct: 453 NKVNVVSFARCLCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLF 512

Query: 382 VSMESMGCKHTVFSY 396
             M+  G    V++Y
Sbjct: 513 KEMKGTGVVPDVYTY 527



 Score = 81.3 bits (199), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 54/227 (23%), Positives = 100/227 (44%), Gaps = 10/227 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++  +     K    D  L LF+ + S G  P+  TY +LIN  C  G
Sbjct: 775 MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCATG 834

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +   + +L  + ++ +     ++  +I+G   E   + +  L  +++  G  P ++ Y 
Sbjct: 835 HLDEAYALLEEMKQTYWPKHVSSYCKVIEGYKRE--FILSLGLLEEVEKNGSAPIILLYK 892

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G   VAL L +E+ + +    +  K N   YT++I        +  A ELF
Sbjct: 893 VLIDNFVKAGRLEVALELHKEVISAS--MSMAAKKN--LYTSLIYSFSYASKIGHAFELF 948

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             M    + PD+ T+  L+ G      W EA    +++ D   Q D+
Sbjct: 949 YDMIRDGVIPDLGTFVHLLMGLIRVRRWEEA----LQLSDSLCQMDI 991



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 94/208 (45%), Gaps = 9/208 (4%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+  C       A     +LK FG KP  +TY+ L+    R      A  +  EM+   
Sbjct: 212 LIRKCCRNGLWNVALEELGRLKDFGYKPTRMTYNALVQVFLRADKLDTAQLVHREMS--- 268

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            + G+     T+ +      LCK G   K +E    ++ ++  P+ + YN +I G C A+
Sbjct: 269 -ELGLSMDEFTLGF--FAQALCKVG---KWREALSLIEKEDFVPNTILYNKMISGLCEAS 322

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
            + EA   L  M      P+V T+ +++       ++    R+L +MI  G  P+ + F+
Sbjct: 323 FFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRILSMMIAEGCYPSYTIFN 382

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +L+  +C +   ++A +L   ME   CK
Sbjct: 383 SLVHAYCKSDDFSYAYKLLKKMEKCECK 410


>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
          Length = 692

 Score =  182 bits (462), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 160/309 (51%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  + D M     +P PP+  ++++     +   + + + + + L++ G   D+   N+
Sbjct: 177 DALAVLDEMPRRGCAPIPPM--YHVILEAACRGGGFRSAVRVLEDLHARGCALDVGNCNL 234

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  C  G V     +L  +      PD V++ +++KGLC   R      L  ++    
Sbjct: 235 VLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMVRMA 294

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN++T++TLI+ LCR G       +  +M          C P+   Y TIIDG+CKEG
Sbjct: 295 CPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHG------CTPDIRMYATIIDGICKEG 348

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E+  +M    + P+VV YN+L+ G C A  W E   LL EM D+    D VTFN
Sbjct: 349 HLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCPLDDVTFN 408

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D  C+NG +D    LLE M+  G  P+  T++T+++GFC  G ++ A  L  SM + 
Sbjct: 409 ILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTAC 468

Query: 388 GCKHTVFSY 396
           GCK    SY
Sbjct: 469 GCKPNTISY 477



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 156/307 (50%), Gaps = 8/307 (2%)

Query: 92  CIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           C+ + M  M     PP + +FN L   L +   ++ V  +  ++   G  PD+  Y  +I
Sbjct: 282 CVQELMEEMVRMACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATII 341

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +     +L R+      P+ V + +L+KGLC+  R  E   L  ++    C 
Sbjct: 342 DGICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKDCP 401

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + +T++ L++  C+ G     + L E+M          C P+ +TYTT+I+G CKEG +
Sbjct: 402 LDDVTFNILVDFFCQNGLVDRVIELLEQMLEHG------CMPDVITYTTVINGFCKEGLI 455

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A  L   M      P+ ++Y  ++ G C A  W +A  L+ +M+ QG   + +TFN +
Sbjct: 456 DEAVMLLKSMTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTL 515

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LCK G +++A  LL+ M++ G +P+  ++ST++DG    G+ + A EL   M + G 
Sbjct: 516 INFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGM 575

Query: 390 KHTVFSY 396
                 Y
Sbjct: 576 SPNTIIY 582



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 149/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 405 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 464

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC+  R ++A  L +++   GC  N IT++TLIN LC+ G 
Sbjct: 465 MTACGCKPNTISYTIVLKGLCSAERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGL 524

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  D+A EL   M +K ++P
Sbjct: 525 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 577

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK G+ + A   L
Sbjct: 578 NTIIYSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFL 637

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G V  A+E+   + S G
Sbjct: 638 AYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 679



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 95/220 (43%), Gaps = 12/220 (5%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           +V  +SLI+ LCA  R  EAA   +          V+ Y+ ++ G CR G    A  L  
Sbjct: 95  SVRLSSLIRSLCAAGRTAEAARALSAAGGGA---GVVAYNAMVAGYCRAGQLESARRL-- 149

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                     V   PN  TY  ++  LC  G +  A  +  +M  +   P    Y+ ++ 
Sbjct: 150 -------AAAVPVPPNAYTYFPVVRALCARGRIADALAVLDEMPRRGCAPIPPMYHVILE 202

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C    +  A  +L ++  +G   DV   N++++ +C  G +DEA  LL  +   G  P
Sbjct: 203 AACRGGGFRSAVRVLEDLHARGCALDVGNCNLVLNAICDQGSVDEALHLLRDLPSFGCEP 262

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +++ ++ G C+  R    +EL   M  M C   + ++
Sbjct: 263 DVVSYNAVLKGLCMAKRWGCVQELMEEMVRMACPPNIVTF 302



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    D  L L   + + G+ P+   Y+ + +   + GR++    +
Sbjct: 542 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREGRINKVIQM 601

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A      + + GC PN  TY+ LI GL  
Sbjct: 602 FDNIQDTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLAS 661

Query: 225 TGHTIVALNLFEEM 238
            G    A  +  E+
Sbjct: 662 EGFVKEAQEMLTEL 675



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 58/120 (48%), Gaps = 1/120 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+N   SP  +  ++ +   L++    + V+ +F  +  T +  D   YN 
Sbjct: 561 DEALELLNVMVNKGMSPNTII-YSSIASALSREGRINKVIQMFDNIQDTTIRSDAVLYNA 619

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G        L  ++ S   P+   +T LI+GL +E  + EA  + T+L + G
Sbjct: 620 VISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 679


>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 499

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 160/289 (55%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           +++N L     K  +    L++++ +  +GL PD YT+N+L+N F K  RV   + +   
Sbjct: 90  SAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFEE 149

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +     +P+ + ++ LI  +C    + +A  +F  +K+ GC+PN+ TY+++I+GL ++GH
Sbjct: 150 MQNQNCSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGH 209

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LFEEM +     G+V     V Y ++I GL + G  D A +LF +M  K + PD
Sbjct: 210 VDKAFFLFEEMTSE----GLVA--TRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQPD 263

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VT+ SL++G   A   +EA  +  E  D G   DV  +NV++D LCK+ ++DEA  +  
Sbjct: 264 HVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFG 323

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +   G+ P+  TF+ LMDG C +GR++ A  L   M+  GC   V  Y
Sbjct: 324 ELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVY 372



 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 100/286 (34%), Positives = 150/286 (52%), Gaps = 7/286 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  +   L K+ H D    LF+ + S GL      YN LI+   + GR   
Sbjct: 188 RGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADA 247

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +L     PD V FTSL+ GL    R  EA  +F + +  GC  +V  Y+ LI+
Sbjct: 248 AAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLYNVLID 307

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC++     A  +F E+       G+V  P+  T+  ++DGLCK G +  A  L   MK
Sbjct: 308 TLCKSKRLDEAWEIFGELEED----GLV--PDVYTFNALMDGLCKSGRIHDAFILLGDMK 361

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                PDV  YN+LI G   +    EA  LL+EM   G +PDVVT+N ++DE CK G+++
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIE 421

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +A RL E +  +G   NT T++T+++G C+ GRV+ A +LF  M+ 
Sbjct: 422 DALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQ 466



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/306 (30%), Positives = 160/306 (52%), Gaps = 7/306 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +  + +F+ M N   SP  +T +++L   + K    +  L +F  + S G  P+++TY  
Sbjct: 141 DSVWKLFEEMQNQNCSPNVIT-YSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTS 199

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   K G V   F +   +         V + SLI GL    R   AA LF ++ + G
Sbjct: 200 MIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKG 259

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+ +T+++L+ GL   G    A  +F+E  +      V C  +   Y  +ID LCK  
Sbjct: 260 LQPDHVTFTSLVYGLGVAGRASEARRIFQEARD------VGCALDVNLYNVLIDTLCKSK 313

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+F ++++  + PDV T+N+L+ G C +   ++A  LL +M   G  PDV  +N
Sbjct: 314 RLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYN 373

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D L K+G+++EA +LL  M   G  P+  T++TL+D  C  GR+  A  LF  + + 
Sbjct: 374 TLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEISAK 433

Query: 388 GCKHTV 393
           G  +TV
Sbjct: 434 GFANTV 439



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/206 (40%), Positives = 119/206 (57%), Gaps = 13/206 (6%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N+L   L K+K  D    +F  L   GL PD+YT+N L++  CK GR+   F++LG + 
Sbjct: 302 YNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMK 361

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R+  TPD   + +LI GL    R+ EA  L  ++++ G +P+V+TY+TLI+  C+ G   
Sbjct: 362 RAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIE 421

Query: 230 VALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK----DKNI 284
            AL LFEE+ A G          NTVTY TI++GLC  G VD+A +LF  MK    D  I
Sbjct: 422 DALRLFEEISAKGF--------ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVI 473

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCL 310
           +PD VTY +L++G   A     AN L
Sbjct: 474 DPDFVTYTTLLNGARQAGLSELANSL 499



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 116/220 (52%), Gaps = 6/220 (2%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A A+ SLI          +A A++  +   G +P+  T++ L+N   +         LFE
Sbjct: 89  ASAYNSLIDAFVKAGYTQKALAVYRVMGQSGLRPDTYTFNVLMNAFKKAKRVDSVWKLFE 148

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM N N      C PN +TY+ +ID +CK G V+KA ++FL MK +   P++ TY S+I 
Sbjct: 149 EMQNQN------CSPNVITYSILIDAVCKCGGVEKALKVFLDMKSRGCRPNIFTYTSMID 202

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   +   ++A  L  EM  +G+    V +N ++  L ++G+ D A++L   M+ +G+ P
Sbjct: 203 GLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLGRSGRADAAAKLFREMLSKGLQP 262

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  TF++L+ G  + GR + A+ +F     +GC   V  Y
Sbjct: 263 DHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDVNLY 302



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 80/263 (30%), Positives = 130/263 (49%), Gaps = 12/263 (4%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
            + A  +F  ML+    P  +T  +L++G L           +F+     G   D+  YN
Sbjct: 245 ADAAAKLFREMLSKGLQPDHVTFTSLVYG-LGVAGRASEARRIFQEARDVGCALDVNLYN 303

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI+  CK  R+   + + G +      PD   F +L+ GLC   RI +A  L   +K  
Sbjct: 304 VLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSGRIHDAFILLGDMKRA 363

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P+V  Y+TLI+GL ++G    A  L  EM +      +  +P+ VTY T+ID  CK 
Sbjct: 364 GCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQS------LGYEPDVVTYNTLIDESCKG 417

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA----NCLLIEMMDQGVQPD 322
           G ++ A  LF ++  K    + VTYN++++G C A   +EA    N +  E +D  + PD
Sbjct: 418 GRIEDALRLFEEISAKGF-ANTVTYNTILNGLCMAGRVDEAYKLFNGMKQETVDGVIDPD 476

Query: 323 VVTFNVIMDELCKNGKMDEASRL 345
            VT+  +++   + G  + A+ L
Sbjct: 477 FVTYTTLLNGARQAGLSELANSL 499


>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
 gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
          Length = 439

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 165/294 (56%), Gaps = 9/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGL--FPDLYTYNILINCFCKMGRVSHG 161
           P +  FN +   +AK + YD V++L+KR+ N+ G+   PDLYT NIL+NCFC+  + S  
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEGIEISPDLYTCNILVNCFCRCFQPSSA 67

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
              LG++++    PD V  +SL+ G C  + I +A  +  +++  G K +V+  + LI+ 
Sbjct: 68  LSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTILIDT 127

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+    + AL + + M +          PN VTY+++I GLCK G +  A+    +M  
Sbjct: 128 LCKNRLVVPALEVLKRMKDRG------ISPNVVTYSSLITGLCKSGRLADAERRLHEMDS 181

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K INP+V+T+++LI  +      ++ + +   M+   + P+V T++ ++  LC + ++DE
Sbjct: 182 KKINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDE 241

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           A ++L+LMI +G  PN  T+STL +GF  + RV+   +L   M   G      S
Sbjct: 242 AIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVS 295



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 6/274 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           +L   L K +     L + KR+   G+ P++ TY+ LI   CK GR++     L  +   
Sbjct: 123 ILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSK 182

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
              P+ + F++LI       ++ +  +++  +      PNV TYS+LI GLC       A
Sbjct: 183 KINPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEA 242

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           + + + M +        C PN VTY+T+ +G  K   VD   +L   M  + +  + V+ 
Sbjct: 243 IKMLDLMISKG------CTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 296

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N+LI G+  A   + A  +   M   G+ P++ ++N+++  L  NG++++A    E M  
Sbjct: 297 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHMQK 356

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
              + +  T++ ++ G C    V  A +LF  ++
Sbjct: 357 TRNDLDIITYTIMIHGMCKACMVKEAYDLFYKLK 390



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 124/274 (45%), Gaps = 29/274 (10%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +++ L   L K+            ++S  + P++ T++ LI+ + K G++S 
Sbjct: 147 RGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGKLSK 206

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +++    P+   ++SLI GLC  +R+ EA  +   + + GC PNV+TYSTL N
Sbjct: 207 VDSVYKMMIQMSIDPNVFTYSSLIYGLCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLAN 266

Query: 221 GLCRTGHTIVALNLFEEMANGN-------------------------GKFGVVCK----P 251
           G  ++      + L ++M                             G FG +      P
Sbjct: 267 GFFKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIP 326

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  +Y  ++ GL   G V+KA   F  M+    + D++TY  +IHG C A    EA  L 
Sbjct: 327 NIRSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDIITYTIMIHGMCKACMVKEAYDLF 386

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            ++  + V+PD   + +++ EL + G   EA  L
Sbjct: 387 YKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 420



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 98/187 (52%), Gaps = 3/187 (1%)

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++ ++ ++  + +     V +NL++ + N  G   +   P+  T   +++  C+    
Sbjct: 8   PSIVEFNKVLTAIAKMQMYDVVINLWKRIENAEG---IEISPDLYTCNILVNCFCRCFQP 64

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A     +M    I PD+VT +SL++GFC +N   +A  +  +M   G++ DVV   ++
Sbjct: 65  SSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYVAGQMEKMGIKRDVVVDTIL 124

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LCKN  +  A  +L+ M  RG++PN  T+S+L+ G C +GR+  A+     M+S   
Sbjct: 125 IDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLHEMDSKKI 184

Query: 390 KHTVFSY 396
              V ++
Sbjct: 185 NPNVITF 191



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 62/218 (28%), Positives = 101/218 (46%), Gaps = 7/218 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  M+ M   P   T  +L++G L      D  + +   + S G  P++ TY+ L N F
Sbjct: 210 VYKMMIQMSIDPNVFTYSSLIYG-LCMHNRVDEAIKMLDLMISKGCTPNVVTYSTLANGF 268

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K  RV  G  +L  + +     + V+  +LIKG     +I  A  +F  + + G  PN+
Sbjct: 269 FKSSRVDDGIKLLDDMPQRGVAANTVSCNTLIKGYFQAGKIDLALGVFGYMTSNGLIPNI 328

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            +Y+ ++ GL   G    AL+ FE M        +      +TYT +I G+CK   V +A
Sbjct: 329 RSYNIVLAGLFANGEVEKALSRFEHMQKTRNDLDI------ITYTIMIHGMCKACMVKEA 382

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            +LF ++K K + PD   Y  +I     A    EA+ L
Sbjct: 383 YDLFYKLKFKRVEPDFKAYTIMIAELNRAGMRTEADAL 420


>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
 gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
          Length = 567

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 154/288 (53%), Gaps = 9/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L   L +   +D   ++F+ +      PD +T+ IL+   C+  ++     +LGR+
Sbjct: 9   TYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRM 68

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 PD   + +LI G        +A     ++    C P V+TY+ +++GLC+   T
Sbjct: 69  KEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERT 128

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ L +EM +        C PN  TY  I++GLC+E  +D+AK++  +M  +   PDV
Sbjct: 129 RDAVKLLDEMRDKG------CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDV 182

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYNS I G C  +  +EA   L  M    V PDVV++  +++ LCK+G +D ASR+L+ 
Sbjct: 183 VTYNSFIKGLCKCDRVDEARKFLARM---PVTPDVVSYTTVINGLCKSGDLDSASRMLDH 239

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RG  P+  T+S+L+DGFC  G V  A  L  SM  +GC+  + +Y
Sbjct: 240 MSNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAY 287



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/335 (30%), Positives = 158/335 (47%), Gaps = 27/335 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M++    P   T F +L   L ++   +    L  R+   G  PD   YN 
Sbjct: 24  DKASAVFQEMIDKSCQPDAFT-FAILLRGLCRSNQLEKARKLLGRMKEMGCVPDDAIYNA 82

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K       F  L  ++++   P  V +T+++ GLC   R  +A  L  +++  G
Sbjct: 83  LISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAERTRDAVKLLDEMRDKG 142

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------NGNGKFGVVCK-------- 250
           C PN+ TY+ ++ GLC       A  + EEMA           N     +CK        
Sbjct: 143 CSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEAR 202

Query: 251 ---------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                    P+ V+YTT+I+GLCK G +D A  +   M ++   PDVVTY+SLI GFC  
Sbjct: 203 KFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKG 262

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            +   A  LL  M+  G +P++V +N ++  L + G + +A  +L  M  RG  P+  ++
Sbjct: 263 GEVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSY 322

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +DG C   RV  AK +F  M   GC     SY
Sbjct: 323 NACIDGLCKAERVKKAKAVFDRMVERGCTPNASSY 357



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/319 (31%), Positives = 161/319 (50%), Gaps = 21/319 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF     M+     P  +T  N++ G L K +     + L   +   G  P++YTYN++
Sbjct: 95  QAFKFLAEMVKNHCLPTVVTYTNIVDG-LCKAERTRDAVKLLDEMRDKGCSPNIYTYNVI 153

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+  ++     +L  +    + PD V + S IKGLC   R+ EA     ++     
Sbjct: 154 VEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV--- 210

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V++Y+T+INGLC++G    A  + + M+N        C P+ VTY+++IDG CK G 
Sbjct: 211 TPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRG------CTPDVVTYSSLIDGFCKGGE 264

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A  L   M      P++V YNSL+          +A  +L+EM  +G  PDVV++N 
Sbjct: 265 VERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 324

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFS----------TLMDGFCLTGRVNHAK 378
            +D LCK  ++ +A  + + M+ RG  PN S++S           L+DG C  GR + A 
Sbjct: 325 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEAC 384

Query: 379 ELFVS-MESMGCKHTVFSY 396
            LF   ++   C+  VF Y
Sbjct: 385 ALFSKVLDEKICEPDVFFY 403



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 151/302 (50%), Gaps = 17/302 (5%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + D+M N R   P + +++ L     K    +  + L   +   G  P++  YN L+   
Sbjct: 236 MLDHMSN-RGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLGCRPNMVAYNSLLGAL 294

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN- 211
            ++G +     +L  + R  FTPD V++ + I GLC   R+ +A A+F ++   GC PN 
Sbjct: 295 HRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNA 354

Query: 212 ---------VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
                    ++ Y+ L++GLC+ G    A  LF ++ +       +C+P+   Y  ++D 
Sbjct: 355 SSYSMLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK-----ICEPDVFFYNVMLDS 409

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            CK   +DKA ++  QM +KN   +VVT+N L+HG C  +  ++A  +L+ M+D+G  PD
Sbjct: 410 HCKRRQIDKALQIHKQMLEKNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPD 468

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
            VT+  ++D +CK GK   A  L E  +  G  P+  T+S L+ G         A  LF 
Sbjct: 469 FVTYGTLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFT 528

Query: 383 SM 384
            +
Sbjct: 529 KL 530



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 168/389 (43%), Gaps = 90/389 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  + D M + +   P + ++N++   L + +  D    + + +   G FPD+ TYN 
Sbjct: 129 RDAVKLLDEMRD-KGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 187

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   CK  RV      L R+     TPD V++T++I GLC    +  A+ +   +   G
Sbjct: 188 FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRG 244

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TYS+LI+G C+ G    A+ L + M     K G  C+PN V Y +++  L + G
Sbjct: 245 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSML----KLG--CRPNMVAYNSLLGALHRLG 298

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNS---------------------------------- 293
            + KA+++ ++M+ +   PDVV+YN+                                  
Sbjct: 299 HIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYS 358

Query: 294 -----------LIHGFCYANDWNEANCLLIEMMDQGV-QPDV------------------ 323
                      L+ G C    ++EA  L  +++D+ + +PDV                  
Sbjct: 359 MLIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDK 418

Query: 324 ----------------VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                           VT+N+++  LC + ++ +A  +L  M+  G  P+  T+ TL+D 
Sbjct: 419 ALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDA 478

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  G+   A ELF      GC   V +Y
Sbjct: 479 MCKCGKSAAALELFEEAVKGGCVPDVVTY 507



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 129/288 (44%), Gaps = 19/288 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  + D ML +    P + ++N L G L +  H      +   +   G  PD+ +YN 
Sbjct: 266 ERAMGLLDSMLKL-GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 324

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDA----------VAFTSLIKGLCAESRIMEAA 197
            I+  CK  RV     V  R++    TP+A          + +T L+ GLC   R  EA 
Sbjct: 325 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEAC 384

Query: 198 ALFTK-LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           ALF+K L    C+P+V  Y+ +++  C+      AL + ++M   N      C  N VT+
Sbjct: 385 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKN-----CC--NVVTW 437

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             ++ GLC +  +  A+ + L M D+   PD VTY +L+   C       A  L  E + 
Sbjct: 438 NILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVK 497

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            G  PDVVT++ ++  L      +EA  L   ++ R   P+  T   L
Sbjct: 498 GGCVPDVVTYSALITGLVHENMAEEAYLLFTKLVERRWVPDDKTLGLL 545



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 107/214 (50%), Gaps = 41/214 (19%)

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G + NV TY+ L+  L R      A  +F+EM + +      C+P+  T+  ++ GLC+
Sbjct: 1   MGYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKS------CQPDAFTFAILLRGLCR 54

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA----------NC------ 309
              ++KA++L  +MK+    PD   YN+LI G+  A D+ +A          +C      
Sbjct: 55  SNQLEKARKLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVT 114

Query: 310 -------------------LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
                              LL EM D+G  P++ T+NVI++ LC+  K+DEA ++LE M 
Sbjct: 115 YTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 174

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +RG  P+  T+++ + G C   RV+ A++    M
Sbjct: 175 VRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARM 208



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 68/145 (46%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  TY  ++  L +E   DKA  +F +M DK+  PD  T+  L+ G C +N   +A  LL
Sbjct: 6   NVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLL 65

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M + G  PD   +N ++    K     +A + L  M+     P   T++ ++DG C  
Sbjct: 66  GRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKA 125

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            R   A +L   M   GC   +++Y
Sbjct: 126 ERTRDAVKLLDEMRDKGCSPNIYTY 150



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 43/72 (59%)

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G + +V T+N ++ +L +  + D+AS + + MI +   P+  TF+ L+ G C + ++  A
Sbjct: 2   GYEHNVFTYNKLLLQLTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKA 61

Query: 378 KELFVSMESMGC 389
           ++L   M+ MGC
Sbjct: 62  RKLLGRMKEMGC 73


>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
 gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
          Length = 368

 Score =  182 bits (461), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 100/296 (33%), Positives = 162/296 (54%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  +   L K         LFK++   G  PD+ TY+ +I+  CK  RV+ 
Sbjct: 4   RGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE 63

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +     +P+   + SLI+GLC  SR  EA+A+  ++ +    PN++T+S LIN
Sbjct: 64  ALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLIN 123

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             C+ G+   A  + + M     + GV  +PN VTY+++++G   +  V +A++LF  M 
Sbjct: 124 IFCKEGNVFEARGVLKTMT----EMGV--EPNVVTYSSLMNGYSLQAEVFEARKLFDVMI 177

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K   PDV +YN LI+G+C A    EA  L  EM+ QG+ PD+V++N ++D LC+ G++ 
Sbjct: 178 TKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLR 237

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA  L + M+  G  P+  T+S L+DGFC  G +  A  LF +M+S   K  +  Y
Sbjct: 238 EAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 293



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 86/192 (44%), Positives = 126/192 (65%), Gaps = 6/192 (3%)

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A G +P+V TY+T+INGLC+ G T+ A  LF++M          C+P+ VTY+TIID LC
Sbjct: 3   ARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAG------CQPDVVTYSTIIDSLC 56

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+  V++A ++F  MK K I+P++ TYNSLI G C  + W EA+ +L EMM   + P++V
Sbjct: 57  KDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIV 116

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TF+++++  CK G + EA  +L+ M   GV PN  T+S+LM+G+ L   V  A++LF  M
Sbjct: 117 TFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVM 176

Query: 385 ESMGCKHTVFSY 396
            + GCK  VFSY
Sbjct: 177 ITKGCKPDVFSY 188



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 145/286 (50%), Gaps = 6/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +   L K +  +  L +F  + + G+ P+++TYN LI   C   R      +
Sbjct: 43  PDVVTYSTIIDSLCKDRRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 102

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+ V F+ LI   C E  + EA  +   +   G +PNV+TYS+L+NG   
Sbjct: 103 LNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSL 162

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF+ M          CKP+  +Y  +I+G CK   + +AK+LF +M  + +
Sbjct: 163 QAEVFEARKLFDVMITKG------CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGL 216

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+V+YN+LI G C      EA+ L   M+  G  PD+ T+++++D  CK G + +A R
Sbjct: 217 TPDIVSYNTLIDGLCQLGRLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFR 276

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           L   M    + PN   ++ L+D  C +  +  A++LF  +   G +
Sbjct: 277 LFRAMQSTYLKPNMVMYNILIDAMCKSRNLKEARKLFSELFVQGLQ 322



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 142/274 (51%), Gaps = 7/274 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  IF YM   +   P + ++N L   L     +    ++   + S  + P++ T+++
Sbjct: 62  NEALDIFSYM-KAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSL 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FCK G V     VL  +      P+ V ++SL+ G   ++ + EA  LF  +   G
Sbjct: 121 LINIFCKEGNVFEARGVLKTMTEMGVEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKG 180

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+V +Y+ LING C+      A  LF EM +          P+ V+Y T+IDGLC+ G
Sbjct: 181 CKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQG------LTPDIVSYNTLIDGLCQLG 234

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A +LF  M      PD+ TY+ L+ GFC      +A  L   M    ++P++V +N
Sbjct: 235 RLREAHDLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYN 294

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           +++D +CK+  + EA +L   + ++G+ PN   +
Sbjct: 295 ILIDAMCKSRNLKEARKLFSELFVQGLQPNMKHW 328



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 65/118 (55%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  +   PDV TY ++I+G C   +   A  L  +M + G QPDVVT++ I+D LCK+ +
Sbjct: 1   MVARGYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRR 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++EA  +   M  +G++PN  T+++L+ G C   R   A  +   M S+     + ++
Sbjct: 61  VNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAMLNEMMSLNIMPNIVTF 118


>gi|41152688|dbj|BAD08213.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 762

 Score =  182 bits (461), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 171/338 (50%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML+ R SP  +T ++ +   L K +  D  + +   +   G+ P+  TYN 
Sbjct: 213 DKAYSTYHEMLDRRISPDVVT-YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C   +       L ++      PD V + SL+  LC   R  EA  +F  +   G
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGV-VC------------ 249
            +P++ TY TL+ G    G     H ++ L +   +   +  F + +C            
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN VTY  +I  LCK G VD A   F QM D+ + P+++ Y SLIH  
Sbjct: 392 LVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL 451

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W++A  L++EM+D+G+  + + FN I+   CK G++ E+ +L +LM+  GV PN 
Sbjct: 452 CIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNV 511

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 512 ITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549



 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 158/310 (50%), Gaps = 44/310 (14%)

Query: 127 LSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           +S + R+   G   + P ++TY ILI C C+ GR+  GF  LG +++  F  +A+ FT L
Sbjct: 69  VSRYNRMARAGAGKVTPTVHTYGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPL 128

Query: 184 IKGLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +KGLCA+ R  +A  +   ++    C P+V + + L+ GLC    +  AL L   MA+  
Sbjct: 129 LKGLCADKRTSDAMDIVLRRMTELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDR 188

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV------------- 289
           G       P+ V+YTT+I+G  KEG  DKA   + +M D+ I+PDVV             
Sbjct: 189 GGGSA---PDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQ 245

Query: 290 ----------------------TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
                                 TYNS++HG+C +    EA   L +M   GV+PDVVT+N
Sbjct: 246 AMDKAMEVLTTMVKNGVMPNCMTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYN 305

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +MD LCKNG+  EA ++ + M  RG+ P+ +T+ TL+ G+   G +     L   M   
Sbjct: 306 SLMDYLCKNGRSTEARKIFDSMTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRN 365

Query: 388 GC--KHTVFS 395
           G    H VF+
Sbjct: 366 GIHPDHHVFN 375



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 11/312 (3%)

Query: 87  PNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           P EA     ++  MR     P + ++N L   L K         +F  +   GL PD+ T
Sbjct: 282 PKEAI---GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT 338

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           Y  L+  +   G +     +L  ++R+   PD   F  LI     + ++ EA  +F+K++
Sbjct: 339 YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMR 398

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G  PNV+TY  +I  LC++G    A+  FE+M +          PN + YT++I  LC
Sbjct: 399 QHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG------LTPNIIVYTSLIHSLC 452

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
                DKA+EL L+M D+ I  + + +NS+IH  C      E+  L   M+  GV+P+V+
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI 512

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ ++D  C  GKMDEA++LL  M   G+ P+  T++TL++G+C   R++ A  LF  M
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEM 572

Query: 385 ESMGCKHTVFSY 396
            S G    + +Y
Sbjct: 573 VSSGVSPNIITY 584



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 104/353 (29%), Positives = 161/353 (45%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+      P    FN+L    AK +  D  + +F ++   GL
Sbjct: 344 QGYATKGALVEMHALLDLMVR-NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC---------- 188
            P++ TY  +I   CK G V    +   +++    TP+ + +TSLI  LC          
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEE 462

Query: 189 -------------------------AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R++E+  LF  +   G KPNVITYSTLI+G C
Sbjct: 463 LILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L   M      F V  KP+ VTY T+I+G C+   +D A  LF +M    
Sbjct: 523 LAGKMDEATKLLSSM------FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+++TYN ++ G  +      A  L + +   G Q ++ T+N+I+  LCKN   DEA 
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+ + + L  +   T TF+ ++      GR + AK+LF ++ + G    V +Y
Sbjct: 637 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFAALSANGLVPDVRTY 689



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/249 (27%), Positives = 120/249 (48%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   G+ P++ TY+ LI+ +C  G++     +L  +      PD V + +LI G C
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYC 557

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A ALF ++ + G  PN+ITY+ ++ GL  T  T  A    +E+  G  K G  
Sbjct: 558 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAA----KELYVGITKSGT- 612

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +    TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I         +EA 
Sbjct: 613 -QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L   +   G+ PDV T++++ + L + G ++E   L   M   G   N+   ++++   
Sbjct: 672 DLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLNSIVRKL 731

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 732 LQRGDITRA 740



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 128/277 (46%), Gaps = 9/277 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 494 ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAG--KMDEATKLLSSMFSVGMKPDCVTYNT 551

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +C++ R+     +   ++ S  +P+ + +  +++GL    R   A  L+  +   G
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 665

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF  +    + PDV TY+ +           E + L + M + G   +    N
Sbjct: 666 RNDEAKDLFAALSANGLVPDVRTYSLMAENLIEQGLLEELDDLFLSMEENGCTANSRMLN 725

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            I+ +L + G +  A   L ++  +  +   ST S L
Sbjct: 726 SIVRKLLQRGDITRAGTYLSMIDEKHFSLEASTASLL 762


>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
 gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
          Length = 443

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 156/288 (54%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  +   LAK K     ++L +++ + G  P + TYN L+N  CKMGR+     +L +I
Sbjct: 36  TYTTIVDWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 95

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           + +  TPD V +TSLI GL  + R  EA  LF ++ + G   + + Y+ LI GL + G  
Sbjct: 96  VDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKI 155

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A ++++ M +        C P+ VT +T+IDGLCK G +  A  +F  M+ + + P+ 
Sbjct: 156 PQASSVYKTMTSQG------CVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNE 209

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y++LIHG C A   + A  +L +M      PD +T+N+++D LCK+G +  A    + 
Sbjct: 210 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDE 269

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  G  P+  T++ L+ GFC  G  + A  +F  M S  C   V +Y
Sbjct: 270 MLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTY 317



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/284 (33%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K K       LFK + S GL  D   Y  LI    + G++     V
Sbjct: 102 PDVVTYTSLIDGLGKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSV 161

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD V  +++I GLC   RI  A  +F  ++A G  PN + YS LI+GLC+
Sbjct: 162 YKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCK 221

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL +  +M          C P+T+TY  +IDGLCK G V  A+  F +M +   
Sbjct: 222 ARKMDCALEMLAQMKK------AFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGC 275

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TYN LI GFC A + + A  +  +M      P+VVT+  ++  LCK  ++ +AS 
Sbjct: 276 KPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASL 335

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             + M  RG  P++  +S+L+DG C +G++     LF  ME  G
Sbjct: 336 YYQHMKERGCPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSG 379



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 146/303 (48%), Gaps = 8/303 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ +F  M + R        +  L   L +        S++K + S G  PD+ T + +
Sbjct: 122 EAYKLFKEMAS-RGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTM 180

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK GR+     +   +      P+ V +++LI GLC   ++  A  +  ++K   C
Sbjct: 181 IDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFC 240

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ ITY+ LI+GLC++G    A   F+EM          CKP+  TY  +I G CK G 
Sbjct: 241 TPDTITYNILIDGLCKSGDVAAARAFFDEMLEAG------CKPDVYTYNILISGFCKAGN 294

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            D A  +F  M     +P+VVTY +LI G C      +A+     M ++G  PD   ++ 
Sbjct: 295 TDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSS 354

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK+GK++    L + M   GV  N+ T + L+   C   RV+ A  LF ++   G
Sbjct: 355 LVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEG 413

Query: 389 CKH 391
             H
Sbjct: 414 MPH 416



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 130/290 (44%), Gaps = 17/290 (5%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           V D  +L   +   CK+   G I A     A  IF  M   R   P    ++ L   L K
Sbjct: 171 VPDVVTLSTMIDGLCKA---GRIGA-----AVRIFKSM-EARGLAPNEVVYSALIHGLCK 221

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
            +  D  L +  ++      PD  TYNILI+  CK G V+        +L +   PD   
Sbjct: 222 ARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLEAGCKPDVYT 281

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +  LI G C       A  +F  + +  C PNV+TY TLI+GLC+      A   ++ M 
Sbjct: 282 YNILISGFCKAGNTDAACGVFDDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMK 341

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C P++  Y++++DGLCK G ++    LF +M+   +  +  T   LI   C
Sbjct: 342 ERG------CPPDSFVYSSLVDGLCKSGKLEGGCMLFDEMERSGV-ANSQTRTRLIFHLC 394

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            AN  +EA  L   +  +G+ P    +N I+  L K+GK++E   + + M
Sbjct: 395 KANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEM 443



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/176 (34%), Positives = 94/176 (53%), Gaps = 6/176 (3%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T+S LINGL + G  I A +L +E    NG     C  +  TYTTI+D L K   + +A 
Sbjct: 1   TFSILINGLVKAGMLIQAHSLAQETTT-NG-----CTIDIHTYTTIVDWLAKNKKIQEAV 54

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            L  ++      P + TYN+L++G C      EA  LL +++D G  PDVVT+  ++D L
Sbjct: 55  ALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGL 114

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            K  +  EA +L + M  RG+  +T  ++ L+ G    G++  A  ++ +M S GC
Sbjct: 115 GKKKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGC 170


>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680 [Vitis vinifera]
 gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
          Length = 592

 Score =  181 bits (460), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 160/293 (54%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +  FN+L   L K    +    LF  +   GL P + ++N LIN +CK G +  GF 
Sbjct: 222 PPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFR 281

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++ +   PD   ++ LI GLC E ++ +A  LF ++   G  PN +T++TLING C
Sbjct: 282 LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHC 341

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            TG   + + ++++M     + GV  KP+ +TY T+I+GLCK G + +AK+L ++M  + 
Sbjct: 342 VTGRADLGMEIYQQML----RKGV--KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY  LI G C   D   A  +  EM+ +G++ D V F  ++   C+ G++ EA 
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+ +T++ ++ GFC  G V    +L   M+  G    V +Y
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTY 508



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 156/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F   +  R   P + SFN L     K+ + D    L + +    +FPD++TY++
Sbjct: 242 NEAQLLFGE-IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK G++     +   +      P+ V FT+LI G C   R      ++ ++   G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+VITY+TLINGLC+ G    A  L  EM           KP+  TYT +IDG CKEG
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG------LKPDKFTYTMLIDGCCKEG 414

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E+  +M  + I  D V + +LI GFC      EA   L EM++ G++PD  T+ 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++   CK G +    +LL+ M   G  P   T++ L++G C  G++ +A  L  +M ++
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 388 G 388
           G
Sbjct: 535 G 535



 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 148/285 (51%), Gaps = 6/285 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P  S   LF  L K        + ++ +   G  PD+  +N+L++  CK  +++   ++ 
Sbjct: 189 PFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLF 248

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
           G I +    P  V+F +LI G C    + +   L   +      P+V TYS LINGLC+ 
Sbjct: 249 GEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKE 308

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  LF EM +     G+V  PN VT+TT+I+G C  G  D   E++ QM  K + 
Sbjct: 309 GQLDDANKLFLEMCDR----GLV--PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVK 362

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDV+TYN+LI+G C   D  EA  L+IEM  +G++PD  T+ +++D  CK G ++ A  +
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            + M+  G+  +   F+ L+ GFC  G+V  A+     M   G K
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK 467



 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 162/320 (50%), Gaps = 18/320 (5%)

Query: 53  KESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           K  LR TV    S    +   CKS   G++     ++ F +  +M+  R  P   T +++
Sbjct: 253 KRGLRPTV---VSFNTLINGYCKS---GNL-----DQGFRLKRFMMENRVFPDVFT-YSV 300

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K    D    LF  +   GL P+  T+  LIN  C  GR   G  +  ++LR  
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD + + +LI GLC    + EA  L  ++   G KP+  TY+ LI+G C+ G    AL
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESAL 420

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            + +EM     K G+  + + V +T +I G C+EG V +A+    +M +  I PD  TY 
Sbjct: 421 EIRKEMV----KEGI--ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            +IHGFC   D      LL EM   G  P VVT+NV+++ LCK G+M  A+ LL+ M+  
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 353 GVNPNTSTFSTLMDGFCLTG 372
           GV P+  T++ L++G C  G
Sbjct: 535 GVVPDDITYNILLEGHCKHG 554



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 170/341 (49%), Gaps = 11/341 (3%)

Query: 53  KESLRLTVKDRASLEQFL-----KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPL 107
           +   RL++    ++  FL         +S  Q  ++    N A  +F  +L  R +    
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSN 155

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             F++L      + ++   +  F+ +    L    ++   L +   K+   S  +     
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           IL   + PD   F  L+  LC E +I EA  LF ++   G +P V++++TLING C++G+
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
                 L   M   N  F     P+  TY+ +I+GLCKEG +D A +LFL+M D+ + P+
Sbjct: 276 LDQGFRLKRFMME-NRVF-----PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VT+ +LI+G C     +    +  +M+ +GV+PDV+T+N +++ LCK G + EA +L+ 
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVI 389

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M  RG+ P+  T++ L+DG C  G +  A E+   M   G
Sbjct: 390 EMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 112/201 (55%), Gaps = 6/201 (2%)

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A A + ++   G  P+V  ++ L++ LC+      A  LF E+    GK G+  +P  V+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI----GKRGL--RPTVVS 262

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+I+G CK G +D+   L   M +  + PDV TY+ LI+G C     ++AN L +EM 
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMC 322

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           D+G+ P+ VTF  +++  C  G+ D    + + M+ +GV P+  T++TL++G C  G + 
Sbjct: 323 DRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            AK+L + M   G K   F+Y
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTY 403


>gi|255556189|ref|XP_002519129.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541792|gb|EEF43340.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 643

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 160/291 (54%), Gaps = 10/291 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF   D M+  R   P ++++NLL   L      D    + K +  +G+ PD  TYNIL
Sbjct: 359 KAFGYRDEMVR-RAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIVPDSITYNIL 417

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +C+ G     F +   ++     P  V +TSLI  L   +R+  A  LF K+   G 
Sbjct: 418 INGYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGA 477

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++I ++ LI+G C  G+   A  L +EM   N        P+ VTY T++ G C+EG 
Sbjct: 478 SPDLIMFNALIDGHCANGNLDRAFALLKEMDKRN------IVPDEVTYNTLMQGRCREGK 531

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A+EL  +MK + I PD ++YN+LI G+    D N+A  +  EM+  G  P ++T+N 
Sbjct: 532 VEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGFNPTLLTYNA 591

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           ++  LCKN + D A  LL+ M+ +G+ P+ ST+ +L++G    G+V+ + E
Sbjct: 592 LIQGLCKNQQGDLAEELLKEMVSKGITPDDSTYFSLIEGI---GKVDDSSE 639



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 109/375 (29%), Positives = 170/375 (45%), Gaps = 69/375 (18%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF  FD M+  +   P + +FN +     K    +TV  L+  +    +   +YT+NI
Sbjct: 183 DDAFECFD-MMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNI 241

Query: 148 LINCFCKMGR-------------------------VSHGFVVLGRILRSCFT-------- 174
           +IN  CK G+                         V HG+   GR+  +           
Sbjct: 242 MINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRG 301

Query: 175 --PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD+  + SLI G+C   ++ EA+ +  K+K  G  P  +TY+TLI+G C  G  + A 
Sbjct: 302 VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAVTYNTLIDGYCNKGDLVKAF 361

Query: 233 NLFEEM---------------------------ANG----NGKFGVVCKPNTVTYTTIID 261
              +EM                           A+G     G  G+V  P+++TY  +I+
Sbjct: 362 GYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV--PDSITYNILIN 419

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           G C+ G   KA  L  +M  K I P +VTY SLI+     N    A+ L  +++ +G  P
Sbjct: 420 GYCRCGNAKKAFNLHDEMISKGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASP 479

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           D++ FN ++D  C NG +D A  LL+ M  R + P+  T++TLM G C  G+V  A+EL 
Sbjct: 480 DLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELL 539

Query: 382 VSMESMGCKHTVFSY 396
             M+  G +    SY
Sbjct: 540 KEMKRRGIRPDHISY 554



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 155/307 (50%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M N    P   T  +L+ G + K    +    + +++   GL P   TYN LI
Sbjct: 290 ARMVLDIMKNRGVEPDSYTYGSLISG-MCKGGKLEEASGILEKMKEIGLLPTAVTYNTLI 348

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +C  G +   F     ++R    P    +  LI  L  E ++ EA  +   +   G  
Sbjct: 349 DGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDMGDSGIV 408

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ ITY+ LING CR G+   A NL +EM +         +P  VTYT++I  L K   +
Sbjct: 409 PDSITYNILINGYCRCGNAKKAFNLHDEMISKG------IQPTLVTYTSLIYVLSKRNRM 462

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A +LF ++  +  +PD++ +N+LI G C   + + A  LL EM  + + PD VT+N +
Sbjct: 463 KAADDLFEKIIREGASPDLIMFNALIDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTL 522

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           M   C+ GK++EA  LL+ M  RG+ P+  +++TL+ G+   G +N A  +   M S+G 
Sbjct: 523 MQGRCREGKVEEARELLKEMKRRGIRPDHISYNTLISGYSKRGDINDAFTIRDEMLSIGF 582

Query: 390 KHTVFSY 396
             T+ +Y
Sbjct: 583 NPTLLTY 589



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F++L     + K  D     F  +   G+ P + T+N +++ F K+ +    +V+   + 
Sbjct: 169 FDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWVLYAEMF 228

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R         F  +I  LC E ++ +A      ++  G KPNV+TY+T+I+G C  G   
Sbjct: 229 RLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVE 288

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + + M N         +P++ TY ++I G+CK G +++A  +  +MK+  + P  V
Sbjct: 289 GARMVLDIMKNRG------VEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIGLLPTAV 342

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G+C   D  +A     EM+ + + P V T+N+++  L   GKMDEA  +++ M
Sbjct: 343 TYNTLIDGYCNKGDLVKAFGYRDEMVRRAILPTVSTYNLLIHALFLEGKMDEADGMIKDM 402

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+ P++ T++ L++G+C  G    A  L   M S G + T+ +Y
Sbjct: 403 GDSGIVPDSITYNILINGYCRCGNAKKAFNLHDEMISKGIQPTLVTY 449



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/220 (32%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF + D M++ +   P L ++  L   L+K         LF+++   G  PDL  +N L
Sbjct: 429 KAFNLHDEMIS-KGIQPTLVTYTSLIYVLSKRNRMKAADDLFEKIIREGASPDLIMFNAL 487

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G +   F +L  + +    PD V + +L++G C E ++ EA  L  ++K  G 
Sbjct: 488 IDGHCANGNLDRAFALLKEMDKRNIVPDEVTYNTLMQGRCREGKVEEARELLKEMKRRGI 547

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+ I+Y+TLI+G  + G    A  + +EM        +   P  +TY  +I GLCK   
Sbjct: 548 RPDHISYNTLISGYSKRGDINDAFTIRDEM------LSIGFNPTLLTYNALIQGLCKNQQ 601

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            D A+EL  +M  K I PD  TY SLI G    +D +EA+
Sbjct: 602 GDLAEELLKEMVSKGITPDDSTYFSLIEGIGKVDDSSEAS 641



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 67/204 (32%), Positives = 110/204 (53%), Gaps = 6/204 (2%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           T  ++ F  LI+  C   R  +A   F  +K  G  P + T++ +++   +   T     
Sbjct: 163 TKSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFNAMLSLFLKLNQTETVWV 222

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L+ EM      F +  K    T+  +I+ LCKEG + KAK+    M++  + P+VVTYN+
Sbjct: 223 LYAEM------FRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENLGVKPNVVTYNT 276

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +IHG+C       A  +L  M ++GV+PD  T+  ++  +CK GK++EAS +LE M   G
Sbjct: 277 VIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLISGMCKGGKLEEASGILEKMKEIG 336

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHA 377
           + P   T++TL+DG+C  G +  A
Sbjct: 337 LLPTAVTYNTLIDGYCNKGDLVKA 360



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 3/164 (1%)

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           ++F E+A    + G     +++ +  +I   C+    D A E F  MK+K + P + T+N
Sbjct: 149 DVFHELAITRDRLGT---KSSIVFDMLIRACCELKRGDDAFECFDMMKEKGVVPKIETFN 205

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +++  F   N       L  EM    ++  V TFN++++ LCK GK+ +A   +  M   
Sbjct: 206 AMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLKKAKDFIGSMENL 265

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GV PN  T++T++ G+C  GRV  A+ +   M++ G +   ++Y
Sbjct: 266 GVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTY 309



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 97/211 (45%), Gaps = 11/211 (5%)

Query: 190 ESRIMEAAALFTKL----KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           ESR+     +F +L       G K +++ +  LI   C       A   F+ M       
Sbjct: 141 ESRVAGVKDVFHELAITRDRLGTKSSIV-FDMLIRACCELKRGDDAFECFDMMKEK---- 195

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           GVV  P   T+  ++    K    +    L+ +M    I   V T+N +I+  C      
Sbjct: 196 GVV--PKIETFNAMLSLFLKLNQTETVWVLYAEMFRLKIKSTVYTFNIMINVLCKEGKLK 253

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A   +  M + GV+P+VVT+N ++   C  G+++ A  +L++M  RGV P++ T+ +L+
Sbjct: 254 KAKDFIGSMENLGVKPNVVTYNTVIHGYCSRGRVEGARMVLDIMKNRGVEPDSYTYGSLI 313

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G C  G++  A  +   M+ +G   T  +Y
Sbjct: 314 SGMCKGGKLEEASGILEKMKEIGLLPTAVTY 344


>gi|47550658|dbj|BAD20284.1| hypothetical protein [Oryza sativa Indica Group]
          Length = 791

 Score =  181 bits (460), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 113/349 (32%), Positives = 171/349 (48%), Gaps = 46/349 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYT 144
            +A  +FD +L  R     +   N     +A+      V S + R+   G   + P ++T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 89

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKL 203
           Y ILI C C+ GR+  GF  LG +++  F  +A+ FT L+KGLCA+ R  +A  +   ++
Sbjct: 90  YGILIGCCCRAGRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
               C P+V + + L+ GLC    +  AL L   MA+  G       P+ V+YTT+I+G 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELLHMMADDRGGGSA---PDVVSYTTVINGF 206

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVV---------------------------------- 289
            KEG  DKA   + +M D+ I+PDVV                                  
Sbjct: 207 FKEGDSDKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNC 266

Query: 290 -TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            TYNS++HG+C +    EA   L +M   GV+PDVVT+N +MD LCKNG+  EA ++ + 
Sbjct: 267 MTYNSILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDS 326

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           M  RG+ P+ +T+ TL+ G+   G +     L   M   G    H VF+
Sbjct: 327 MTKRGLEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFN 375



 Score =  181 bits (459), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 102/338 (30%), Positives = 171/338 (50%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+  +  ML+ R SP  +T ++ +   L K +  D  + +   +   G+ P+  TYN 
Sbjct: 213 DKAYSTYHEMLDRRISPDVVT-YSSIIAALCKGQAMDKAMEVLTTMVKNGVMPNCMTYNS 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C   +       L ++      PD V + SL+  LC   R  EA  +F  +   G
Sbjct: 272 ILHGYCSSEQPKEAIGFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRG 331

Query: 208 CKPNVITYSTLINGLCRTG-----HTIVALNLFEEMANGNGKFGV-VC------------ 249
            +P++ TY TL+ G    G     H ++ L +   +   +  F + +C            
Sbjct: 332 LEPDIATYCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAM 391

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN VTY  +I  LCK G VD A   F QM D+ + P+++ Y SLIH  
Sbjct: 392 LVFSKMRQHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSL 451

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C  + W++A  L++EM+D+G+  + + FN I+   CK G++ E+ +L +LM+  GV PN 
Sbjct: 452 CIFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNV 511

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+STL+DG+CL G+++ A +L  SM S+G K    +Y
Sbjct: 512 ITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTY 549



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 160/312 (51%), Gaps = 11/312 (3%)

Query: 87  PNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           P EA     ++  MR     P + ++N L   L K         +F  +   GL PD+ T
Sbjct: 282 PKEAI---GFLKKMRSDGVEPDVVTYNSLMDYLCKNGRSTEARKIFDSMTKRGLEPDIAT 338

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           Y  L+  +   G +     +L  ++R+   PD   F  LI     + ++ EA  +F+K++
Sbjct: 339 YCTLLQGYATKGALVEMHALLDLMVRNGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMR 398

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G  PNV+TY  +I  LC++G    A+  FE+M +          PN + YT++I  LC
Sbjct: 399 QHGLNPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEG------LTPNIIVYTSLIHSLC 452

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
                DKA+EL L+M D+ I  + + +NS+IH  C      E+  L   M+  GV+P+V+
Sbjct: 453 IFDKWDKAEELILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVI 512

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ ++D  C  GKMDEA++LL  M   G+ P+  T++TL++G+C   R++ A  LF  M
Sbjct: 513 TYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEM 572

Query: 385 ESMGCKHTVFSY 396
            S G    + +Y
Sbjct: 573 VSSGVSPNIITY 584



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 105/353 (29%), Positives = 161/353 (45%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+      P    FN+L    AK +  D  + +F ++   GL
Sbjct: 344 QGYATKGALVEMHALLDLMVR-NGIHPDHHVFNILICAYAKQEKVDEAMLVFSKMRQHGL 402

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC---------- 188
            P++ TY  +I   CK G V    +   +++    TP+ + +TSLI  LC          
Sbjct: 403 NPNVVTYGAVIGILCKSGSVDDAMLYFEQMIDEGLTPNIIVYTSLIHSLCIFDKWDKAEE 462

Query: 189 -------------------------AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
                                     E R++E+  LF  +   G KPNVITYSTLI+G C
Sbjct: 463 LILEMLDRGICLNTIFFNSIIHSHCKEGRVIESEKLFDLMVRIGVKPNVITYSTLIDGYC 522

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L   M      F V  KP+ VTY T+I+G C+   +D A  LF +M    
Sbjct: 523 LAGKMDEATKLLSSM------FSVGMKPDCVTYNTLINGYCRVSRMDDALALFKEMVSSG 576

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+++TYN ++ G  +      A  L + +   G Q ++ T+N+I+  LCKN   DEA 
Sbjct: 577 VSPNIITYNIILQGLFHTRRTAAAKELYVGITKSGTQLELSTYNIILHGLCKNNLTDEAL 636

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+ + + L  +   T TF+ ++      GR + AK+LFV+  S G     ++Y
Sbjct: 637 RMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 689



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 127/279 (45%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D    L   + S G+ PD  TYN 
Sbjct: 494 ESEKLFDLMVRIGVKPNVITYSTLIDGYCLAGK--MDEATKLLSSMFSVGMKPDCVTYNT 551

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +C++ R+     +   ++ S  +P+ + +  +++GL    R   A  L+  +   G
Sbjct: 552 LINGYCRVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAAKELYVGITKSG 611

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + +        T T+  +I  L K G
Sbjct: 612 TQLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQL------ETRTFNIMIGALLKVG 665

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AK+LF+      + P+  TY  +           E + L   M D G   D    N
Sbjct: 666 RNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLN 725

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ EL + G++  A   L ++  +  +   ST S  +D
Sbjct: 726 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 764



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 117/249 (46%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   G+ P++ TY+ LI+ +C  G++     +L  +      PD V + +LI G C
Sbjct: 498 LFDLMVRIGVKPNVITYSTLIDGYCLAGKMDEATKLLSSMFSVGMKPDCVTYNTLINGYC 557

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A ALF ++ + G  PN+ITY+ ++ GL  T  T  A    +E+  G  K G  
Sbjct: 558 RVSRMDDALALFKEMVSSGVSPNIITYNIILQGLFHTRRTAAA----KELYVGITKSGT- 612

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +    TY  I+ GLCK    D+A  +F  +   ++  +  T+N +I         +EA 
Sbjct: 613 -QLELSTYNIILHGLCKNNLTDEALRMFQNLCLTDLQLETRTFNIMIGALLKVGRNDEAK 671

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L +     G+ P+  T+ ++ + +   G ++E  +L   M   G   ++   + ++   
Sbjct: 672 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFFSMEDNGCTVDSGMLNFIVREL 731

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 732 LQRGEITRA 740


>gi|356538593|ref|XP_003537787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Glycine max]
          Length = 583

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 99/334 (29%), Positives = 171/334 (51%), Gaps = 44/334 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGR 157
           R   P LT+FN+    L K    +    + + + + G  P++ TYN LI+  CK    G+
Sbjct: 194 RRIQPNLTTFNIFINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKGSAGK 253

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  +L +   P+ + F +LI G C +  ++ A   F +++  G KPN++TY++
Sbjct: 254 MYRADAILKEMLANKICPNEITFNTLIDGFCKDENVLAAKNAFEEMQRQGLKPNIVTYNS 313

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LINGL   G    A+ L+++M       G+  KPN VT+  +I+G CK+  + +A++LF 
Sbjct: 314 LINGLSNNGKLDEAIALWDKMV------GLGLKPNIVTFNALINGFCKKKMIKEARKLFD 367

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP---------------- 321
            + ++++ P+ +T+N++I  FC A    E   L   M+D+G+ P                
Sbjct: 368 DIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQ 427

Query: 322 -------------------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
                              DVVT+N+++   CK+G+  +A +LL  M+  GV PN  T++
Sbjct: 428 NVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGVKPNHVTYN 487

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           TLMDG+C+ G +  A ++   ME  G +  V +Y
Sbjct: 488 TLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTY 521



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 100/293 (34%), Positives = 157/293 (53%), Gaps = 9/293 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S N L   L K      +  ++K +    + P+L T+NI IN  CK G+++    V+ 
Sbjct: 165 LNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNIFINGLCKAGKLNKAEDVIE 224

Query: 167 RILRSCFTPDAVAFTSLIKGLCAE---SRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            I    F+P+ V + +LI G C +    ++  A A+  ++ A    PN IT++TLI+G C
Sbjct: 225 DIKAWGFSPNIVTYNTLIDGHCKKGSAGKMYRADAILKEMLANKICPNEITFNTLIDGFC 284

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +  + + A N FEEM           KPN VTY ++I+GL   G +D+A  L+ +M    
Sbjct: 285 KDENVLAAKNAFEEMQRQG------LKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLG 338

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P++VT+N+LI+GFC      EA  L  ++ +Q + P+ +TFN ++D  CK G M+E  
Sbjct: 339 LKPNIVTFNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGF 398

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L   M+  G+ PN ST++ L+ G C    V  AK+L   ME+   K  V +Y
Sbjct: 399 ALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTY 451



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 139/260 (53%), Gaps = 6/260 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L+     D  ++L+ ++   GL P++ T+N LIN FCK   +     +
Sbjct: 306 PNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKMIKEARKL 365

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I      P+A+ F ++I   C    + E  AL   +   G  PNV TY+ LI GLCR
Sbjct: 366 FDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCR 425

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  L  EM N         K + VTY  +I G CK+G   KA++L  +M +  +
Sbjct: 426 NQNVRAAKKLLNEMEN------YELKADVVTYNILIGGWCKDGEPSKAEKLLGEMLNVGV 479

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN+L+ G+C   +   A  +  +M  +G + +VVT+NV++   CK GK+++A+R
Sbjct: 480 KPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANR 539

Query: 345 LLELMILRGVNPNTSTFSTL 364
           LL  M+ +G+NPN +T+  +
Sbjct: 540 LLNEMLEKGLNPNRTTYDVV 559



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 101/316 (31%), Positives = 152/316 (48%), Gaps = 12/316 (3%)

Query: 73  RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
            CK    G +       A  I   ML  +  P  +T FN L     K ++     + F+ 
Sbjct: 245 HCKKGSAGKMY-----RADAILKEMLANKICPNEIT-FNTLIDGFCKDENVLAAKNAFEE 298

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +   GL P++ TYN LIN     G++     +  +++     P+ V F +LI G C +  
Sbjct: 299 MQRQGLKPNIVTYNSLINGLSNNGKLDEAIALWDKMVGLGLKPNIVTFNALINGFCKKKM 358

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           I EA  LF  +      PN IT++T+I+  C+ G       L   M +  G F     PN
Sbjct: 359 IKEARKLFDDIAEQDLVPNAITFNTMIDAFCKAGMMEEGFALHNSMLD-EGIF-----PN 412

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
             TY  +I GLC+   V  AK+L  +M++  +  DVVTYN LI G+C   + ++A  LL 
Sbjct: 413 VSTYNCLIAGLCRNQNVRAAKKLLNEMENYELKADVVTYNILIGGWCKDGEPSKAEKLLG 472

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM++ GV+P+ VT+N +MD  C  G +  A ++   M   G   N  T++ L+ GFC TG
Sbjct: 473 EMLNVGVKPNHVTYNTLMDGYCMEGNLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTG 532

Query: 373 RVNHAKELFVSMESMG 388
           ++  A  L   M   G
Sbjct: 533 KLEDANRLLNEMLEKG 548



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/250 (34%), Positives = 129/250 (51%), Gaps = 7/250 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  ++D M+ +   P  +T FN L     K K       LF  +    L P+  T+N 
Sbjct: 325 DEAIALWDKMVGLGLKPNIVT-FNALINGFCKKKMIKEARKLFDDIAEQDLVPNAITFNT 383

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G +  GF +   +L     P+   +  LI GLC    +  A  L  +++ + 
Sbjct: 384 MIDAFCKAGMMEEGFALHNSMLDEGIFPNVSTYNCLIAGLCRNQNVRAAKKLLNEMENYE 443

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K +V+TY+ LI G C+ G    A  L  EM N      V  KPN VTY T++DG C EG
Sbjct: 444 LKADVVTYNILIGGWCKDGEPSKAEKLLGEMLN------VGVKPNHVTYNTLMDGYCMEG 497

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A ++  QM+ +    +VVTYN LI GFC      +AN LL EM+++G+ P+  T++
Sbjct: 498 NLKAALKVRTQMEKEGKRANVVTYNVLIKGFCKTGKLEDANRLLNEMLEKGLNPNRTTYD 557

Query: 328 VIMDELCKNG 337
           V+  E+ + G
Sbjct: 558 VVRLEMLEKG 567



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 60/104 (57%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A E+F +++D      + + N L+      N+  E   +  EM+ + +QP++ TFN+
Sbjct: 146 IHSACEVFRRVQDYGFKLSLNSCNPLLSALVKGNETGEMQYVYKEMIKRRIQPNLTTFNI 205

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            ++ LCK GK+++A  ++E +   G +PN  T++TL+DG C  G
Sbjct: 206 FINGLCKAGKLNKAEDVIEDIKAWGFSPNIVTYNTLIDGHCKKG 249


>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
          Length = 559

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 160/293 (54%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +  FN+L   L K    +    LF  +   GL P + ++N LIN +CK G +  GF 
Sbjct: 222 PPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFR 281

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++ +   PD   ++ LI GLC E ++ +A  LF ++   G  PN +T++TLING C
Sbjct: 282 LKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHC 341

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            TG   + + ++++M     + GV  KP+ +TY T+I+GLCK G + +AK+L ++M  + 
Sbjct: 342 VTGRADLGMEIYQQML----RKGV--KPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG 395

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY  LI G C   D   A  +  EM+ +G++ D V F  ++   C+ G++ EA 
Sbjct: 396 LKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAE 455

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+ +T++ ++ GFC  G V    +L   M+  G    V +Y
Sbjct: 456 RTLREMLEAGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTY 508



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/301 (33%), Positives = 156/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +F   +  R   P + SFN L     K+ + D    L + +    +FPD++TY++
Sbjct: 242 NEAQLLFGE-IGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSV 300

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK G++     +   +      P+ V FT+LI G C   R      ++ ++   G
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+VITY+TLINGLC+ G    A  L  EM           KP+  TYT +IDG CKEG
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRG------LKPDKFTYTMLIDGCCKEG 414

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E+  +M  + I  D V + +LI GFC      EA   L EM++ G++PD  T+ 
Sbjct: 415 DLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++   CK G +    +LL+ M   G  P   T++ L++G C  G++ +A  L  +M ++
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 388 G 388
           G
Sbjct: 535 G 535



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/285 (33%), Positives = 148/285 (51%), Gaps = 6/285 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P  S   LF  L K        + ++ +   G  PD+  +N+L++  CK  +++   ++ 
Sbjct: 189 PFHSCGYLFDRLMKLNLTSPAWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLF 248

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
           G I +    P  V+F +LI G C    + +   L   +      P+V TYS LINGLC+ 
Sbjct: 249 GEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKE 308

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  LF EM +     G+V  PN VT+TT+I+G C  G  D   E++ QM  K + 
Sbjct: 309 GQLDDANKLFLEMCDR----GLV--PNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVK 362

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDV+TYN+LI+G C   D  EA  L+IEM  +G++PD  T+ +++D  CK G ++ A  +
Sbjct: 363 PDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESALEI 422

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            + M+  G+  +   F+ L+ GFC  G+V  A+     M   G K
Sbjct: 423 RKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLREMLEAGIK 467



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/314 (33%), Positives = 159/314 (50%), Gaps = 18/314 (5%)

Query: 53  KESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           K  LR TV    S    +   CKS   G++     ++ F +  +M+  R  P   T +++
Sbjct: 253 KRGLRPTV---VSFNTLINGYCKS---GNL-----DQGFRLKRFMMENRVFPDVFT-YSV 300

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K    D    LF  +   GL P+  T+  LIN  C  GR   G  +  ++LR  
Sbjct: 301 LINGLCKEGQLDDANKLFLEMCDRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKG 360

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD + + +LI GLC    + EA  L  ++   G KP+  TY+ LI+G C+ G    AL
Sbjct: 361 VKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGCCKEGDLESAL 420

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            + +EM     K G+  + + V +T +I G C+EG V +A+    +M +  I PD  TY 
Sbjct: 421 EIRKEMV----KEGI--ELDNVAFTALISGFCREGQVIEAERTLREMLEAGIKPDDATYT 474

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            +IHGFC   D      LL EM   G  P VVT+NV+++ LCK G+M  A+ LL+ M+  
Sbjct: 475 MVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCKQGQMKNANMLLDAMLNL 534

Query: 353 GVNPNTSTFSTLMD 366
           GV P+  T++ L++
Sbjct: 535 GVVPDDITYNILLE 548



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 170/341 (49%), Gaps = 11/341 (3%)

Query: 53  KESLRLTVKDRASLEQFL-----KERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPL 107
           +   RL++    ++  FL         +S  Q  ++    N A  +F  +L  R +    
Sbjct: 96  QHHFRLSIHSYCTMTHFLCTHKMLSEAQSLLQFVVSRKGKNSASSVFTSVLEARGTHQSN 155

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             F++L      + ++   +  F+ +    L    ++   L +   K+   S  +     
Sbjct: 156 LVFSVLMNAYTDSGYFSDAIQCFRLVRKHNLQIPFHSCGYLFDRLMKLNLTSPAWAFYEE 215

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           IL   + PD   F  L+  LC E +I EA  LF ++   G +P V++++TLING C++G+
Sbjct: 216 ILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGN 275

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
                 L   M   N  F     P+  TY+ +I+GLCKEG +D A +LFL+M D+ + P+
Sbjct: 276 LDQGFRLKRFMME-NRVF-----PDVFTYSVLINGLCKEGQLDDANKLFLEMCDRGLVPN 329

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VT+ +LI+G C     +    +  +M+ +GV+PDV+T+N +++ LCK G + EA +L+ 
Sbjct: 330 DVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVI 389

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M  RG+ P+  T++ L+DG C  G +  A E+   M   G
Sbjct: 390 EMTQRGLKPDKFTYTMLIDGCCKEGDLESALEIRKEMVKEG 430



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/201 (33%), Positives = 112/201 (55%), Gaps = 6/201 (2%)

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A A + ++   G  P+V  ++ L++ LC+      A  LF E+    GK G+  +P  V+
Sbjct: 209 AWAFYEEILDCGYPPDVCKFNVLMHRLCKEHKINEAQLLFGEI----GKRGL--RPTVVS 262

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+I+G CK G +D+   L   M +  + PDV TY+ LI+G C     ++AN L +EM 
Sbjct: 263 FNTLINGYCKSGNLDQGFRLKRFMMENRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMC 322

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           D+G+ P+ VTF  +++  C  G+ D    + + M+ +GV P+  T++TL++G C  G + 
Sbjct: 323 DRGLVPNDVTFTTLINGHCVTGRADLGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLR 382

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            AK+L + M   G K   F+Y
Sbjct: 383 EAKKLVIEMTQRGLKPDKFTY 403


>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 665

 Score =  181 bits (459), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 160/308 (51%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++ +L   + K+  +   + +   + + G  P++ TYN++
Sbjct: 155 DALSLLDDMLR-RECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVI 213

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C+  RV     +L R+    F PD V++T+++KGLCA  R  +   LF ++    C
Sbjct: 214 INGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNC 273

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T+  L+   CR G    A+ + + M+         C  NT     +I+ +CK+G 
Sbjct: 274 VPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHG------CTANTTLCNIVINSICKQGR 327

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A E    M     +PD ++Y +++ G C A  W +A  LL EM+ +   P+ VTFN 
Sbjct: 328 VDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVRKNCPPNEVTFNT 387

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  LC+ G +D+A  L+E M   G +    T++ L++GFC+ GRV+ A ELF    S+ 
Sbjct: 388 FICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALELF---NSLP 444

Query: 389 CKHTVFSY 396
           C+    +Y
Sbjct: 445 CEPNTITY 452



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 142/269 (52%), Gaps = 11/269 (4%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           + +    +G   D++ YN L+  +C+ GR+     ++  +      PDA  +T LI+GLC
Sbjct: 92  VLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLC 148

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
              R+ +A +L   +    C+P+V+TY+ L+  +C++     A+ + +EM A G      
Sbjct: 149 DRGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKG------ 202

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C PN VTY  II+G+C+E  VD A+++  ++      PD V+Y +++ G C A  W + 
Sbjct: 203 -CTPNIVTYNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDV 261

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EM++    P+ VTF++++   C+ G ++ A  +L+ M   G   NT+  + +++ 
Sbjct: 262 EVLFCEMVENNCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINS 321

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV+ A E   +M S GC     SY
Sbjct: 322 ICKQGRVDDAFEFLNNMGSYGCSPDTISY 350



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 146/286 (51%), Gaps = 9/286 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N++   + K    D        + S G  PD  +Y  ++   C+ GR      +L  ++R
Sbjct: 316 NIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDAKELLNEMVR 375

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ V F + I  LC +  I +A  L  ++  +GC   ++TY+ L+NG C  G    
Sbjct: 376 KNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDS 435

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF  +          C+PNT+TYTT++ GLC    +D A EL  +M   +   +VVT
Sbjct: 436 ALELFNSLP---------CEPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVT 486

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N L+  FC      EA  L+ +MM+ G  P+++TFN ++D + ++   +EA  LL  ++
Sbjct: 487 FNVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLV 546

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +G++ +T T+S+++D      R+  A ++F +++ MG +     Y
Sbjct: 547 SKGISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMY 592



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 9/285 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN     L +    D  + L +++   G    + TYN L+N FC  GRV     
Sbjct: 379 PPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVGIVTYNALVNGFCVQGRVDSALE 438

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +   C  P+ + +T+L+ GLC   R+  AA L  ++    C  NV+T++ L++  C
Sbjct: 439 LFNSL--PC-EPNTITYTTLLTGLCHAERLDAAAELLAEMMQNDCPLNVVTFNVLVSFFC 495

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ L ++M          C PN +T+ T++DG+ ++   ++A EL   +  K 
Sbjct: 496 QKGFVEEAIELVQQMMEHG------CTPNLITFNTLLDGITEDCNSEEALELLHGLVSKG 549

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I+ D +TY+S++      +   EA  +   + D G++P  V +N I+  LCK  + D A 
Sbjct: 550 ISLDTITYSSIVDVLSREDRIEEAVQMFHAVQDMGMRPKAVMYNKILSALCKRCETDRAI 609

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+     PN ST+  L++G    G +  A+ +   + S G
Sbjct: 610 DFFAHMVSNSCMPNESTYVILIEGLAREGLLKEARYVLSELCSRG 654



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 105/216 (48%), Gaps = 9/216 (4%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD    T LI+ LC   R  +AA +    +  G   +V  Y+TL+ G CR G    A  
Sbjct: 67  APDVYLCTKLIRNLCRRGRTSDAARVLRTAEGSGAPVDVFAYNTLVAGYCRYGRLDAARR 126

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L   M            P+  TYT +I GLC  G V  A  L   M  +   P VVTY  
Sbjct: 127 LIASMP---------VPPDAYTYTPLIRGLCDRGRVGDALSLLDDMLRRECQPSVVTYTV 177

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+   C ++ + +A  +L EM  +G  P++VT+NVI++ +C+  ++D+A ++L  +   G
Sbjct: 178 LLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYNVIINGMCREDRVDDARQILNRLSSYG 237

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             P+T +++T++ G C   R    + LF  M    C
Sbjct: 238 FQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVENNC 273



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/216 (30%), Positives = 109/216 (50%), Gaps = 9/216 (4%)

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           +S ++ L A   + EAA L  +  + G  P+V   + LI  LCR G T  A  +    A 
Sbjct: 39  SSRLRRLIARDDLAEAARLVERSTSRGEAPDVYLCTKLIRNLCRRGRTSDAARVL-RTAE 97

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
           G+G        +   Y T++ G C+ G +D A+ L   M    + PD  TY  LI G C 
Sbjct: 98  GSGA-----PVDVFAYNTLVAGYCRYGRLDAARRLIASMP---VPPDAYTYTPLIRGLCD 149

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                +A  LL +M+ +  QP VVT+ V+++ +CK+    +A ++L+ M  +G  PN  T
Sbjct: 150 RGRVGDALSLLDDMLRRECQPSVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVT 209

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ +++G C   RV+ A+++   + S G +    SY
Sbjct: 210 YNVIINGMCREDRVDDARQILNRLSSYGFQPDTVSY 245


>gi|449522636|ref|XP_004168332.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Cucumis sativus]
          Length = 590

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   SFN L   L K+++ D    L K +    ++PD++TY++LI+  CK GR+     +
Sbjct: 256 PTTVSFNTLINGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQL 315

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ + FT+LI G     R+  A   + ++   G KP+++ Y+TL+NGLC+
Sbjct: 316 FDEMQQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCK 375

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM        V  KP+ +TYTT+IDG CKEG ++ A E+   M ++ +
Sbjct: 376 VGDVNKARKLVDEMKM------VGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGV 429

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V + +LI GFC      +A   L EM++ G++PD  T+ +++D  CK G +    +
Sbjct: 430 VLDNVAFTALISGFCRDGRVRDAERTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFK 489

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M + G  P   T++ LM+G C  G++ +A  L  +M ++G      +Y
Sbjct: 490 LLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITY 541



 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 95/293 (32%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +  +N+L     K         +F  +   GL P   ++N LIN  CK   +  GF 
Sbjct: 220 PPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFR 279

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  +   PD   ++ LI GLC E R+  A  LF +++  G +PN IT++ LI+G  
Sbjct: 280 LKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRGLRPNGITFTALIDGQY 339

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R+     A+N + +M       GV  KP+ V Y T+++GLCK G V+KA++L  +MK   
Sbjct: 340 RSRRMDSAMNTYHQMLT----MGV--KPDLVMYNTLLNGLCKVGDVNKARKLVDEMKMVG 393

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G+C   D   A  +   M ++GV  D V F  ++   C++G++ +A 
Sbjct: 394 MKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTALISGFCRDGRVRDAE 453

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+ +T++ ++DG+C  G V    +L   M+  G K  V +Y
Sbjct: 454 RTLREMVEAGMKPDDATYTMVIDGYCKKGNVKMGFKLLKEMQINGHKPGVITY 506



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/272 (33%), Positives = 138/272 (50%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           T+ + +  +   G  P +  YNILIN FCK G +    ++   I +    P  V+F +LI
Sbjct: 206 TIWTFYSEILEYGFPPKVQYYNILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLI 265

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            GLC    + E   L   ++     P+V TYS LI+GLC+ G   VA  LF+EM      
Sbjct: 266 NGLCKSRNLDEGFRLKKTMEENRIYPDVFTYSVLIHGLCKEGRLDVAEQLFDEMQQRG-- 323

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                +PN +T+T +IDG  +   +D A   + QM    + PD+V YN+L++G C   D 
Sbjct: 324 ----LRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGLCKVGDV 379

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           N+A  L+ EM   G++PD +T+  ++D  CK G ++ A  + + M   GV  +   F+ L
Sbjct: 380 NKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDNVAFTAL 439

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + GFC  GRV  A+     M   G K    +Y
Sbjct: 440 ISGFCRDGRVRDAERTLREMVEAGMKPDDATY 471



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 83/276 (30%), Positives = 140/276 (50%), Gaps = 10/276 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M   R   P   +F  L     +++  D+ ++ + ++ + G+ PDL  YN L+N  
Sbjct: 315 LFDEM-QQRGLRPNGITFTALIDGQYRSRRMDSAMNTYHQMLTMGVKPDLVMYNTLLNGL 373

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+G V+    ++  +      PD + +T+LI G C E  +  A  +   +   G   + 
Sbjct: 374 CKVGDVNKARKLVDEMKMVGMKPDKITYTTLIDGYCKEGDLESAMEIRKGMNEEGVVLDN 433

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + ++ LI+G CR G    A     EM           KP+  TYT +IDG CK+G V   
Sbjct: 434 VAFTALISGFCRDGRVRDAERTLREMVEAG------MKPDDATYTMVIDGYCKKGNVKMG 487

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L  +M+     P V+TYN L++G C       AN LL  M++ GV PD +T+N++++ 
Sbjct: 488 FKLLKEMQINGHKPGVITYNVLMNGLCKQGQMKNANMLLEAMLNLGVTPDDITYNILLEG 547

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            CKNGK   A  LL+L   +G+  + + +++L+  +
Sbjct: 548 HCKNGK---AEDLLKLRNEKGLIVDYAYYTSLVSEY 580



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/130 (24%), Positives = 61/130 (46%)

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           GFV  A + F  +++ N          L+     +N          E+++ G  P V  +
Sbjct: 167 GFVSDAIQCFRLVRNSNFQIPFHGCGYLLDKMINSNSPVTIWTFYSEILEYGFPPKVQYY 226

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++++ CK G + +A  +   +  RG+ P T +F+TL++G C +  ++    L  +ME 
Sbjct: 227 NILINKFCKEGSIRDAKLIFNEIRKRGLRPTTVSFNTLINGLCKSRNLDEGFRLKKTMEE 286

Query: 387 MGCKHTVFSY 396
                 VF+Y
Sbjct: 287 NRIYPDVFTY 296


>gi|449449677|ref|XP_004142591.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 165/334 (49%), Gaps = 41/334 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R S P + S++ +             L L   +   GL P+ YTYN +I   CK+G+
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 158 -------------------------VSHGFVVLGRI----------LRSCFTPDAVAFTS 182
                                    + HGF  LG +          L    +PD + +T+
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+G     +++E   LF ++ + G KP+ +TY+TLI+  C+ G  + A +L  EM    
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV--- 460

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            + G+   PN VTY  +IDGLCK G +D A EL  +M+ K +  +V  YNS+++G C A 
Sbjct: 461 -QMGMT--PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +  +A  L+ EM   G+ PD +T+  ++D  C+ G +D+A +LL+ M+ RG+ P   TF+
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM+GFC+ G +     L   M   G      +Y
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611



 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 166/303 (54%), Gaps = 7/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD ML+ + SP  +T   L+ G     K  +   +LF  + S GL PD  TY  LI+ +C
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQ-NLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K G + + F +   +++   TP+ V + +LI GLC    +  A  L  +++  G + NV 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y++++NG+C+ G+   A+ L +EM            P+ +TYTT+ID  C+ G +DKA 
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAG------IDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L  +M D+ + P VVT+N L++GFC      + + LL  M+++G+ PD +T+N +M + 
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C    M+  +++ + M  +GV P+++T++ L+ G C    +  A  L+  M   G   TV
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTV 678

Query: 394 FSY 396
            SY
Sbjct: 679 TSY 681



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 148/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           TS+N++   L +         L  +++     PD+ +Y+ +I+ +C +G +     ++  
Sbjct: 259 TSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDD 318

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+   + S+I  LC   +  EA  +  ++ +    P+ + Y+TLI+G  + GH
Sbjct: 319 MQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGH 378

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A   F+EM +          P+ +TYTT+I G  + G V + + LF +M  + + PD
Sbjct: 379 VRTANKWFDEMLSKK------ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTY +LI  +C A +   A  L  EM+  G+ P++VT+  ++D LCK+G++D A+ LL+
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  +G+  N   ++++++G C  G +  A +L   ME  G      +Y
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY 541



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 7/277 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + + M+ M  +P  +T +  L   L K    DT   L   +   GL  ++  YN ++
Sbjct: 452 AFSLHNEMVQMGMTPNIVT-YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMV 510

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK G +     ++  +  +   PDA+ +T++I   C    I +A  L  ++   G +
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P V+T++ L+NG C  G       L   M       G+V  P+ +TY T++   C    +
Sbjct: 571 PTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK----GIV--PDAITYNTLMKQHCIRNSM 624

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           +   +++ +M+++ + PD  TYN LI G C A +  EA  L  EM+++G  P V ++N +
Sbjct: 625 NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +    K  K+ EA  L E M   G+  +   ++  +D
Sbjct: 685 IKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVD 721



 Score =  100 bits (250), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 114/215 (53%), Gaps = 10/215 (4%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VA 231
           + P+ +AF    + L     + EA  L  KL ++G    V + +  ++ +      I +A
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA 245

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           + +F E       +G+    NT +Y  II  LC+ G V +A  L +QM  ++  PDVV+Y
Sbjct: 246 IKVFCE-------YGISW--NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSY 296

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           +++I G+C+  +  +A  L+ +M  +G++P+  T+N I+  LCK GK  EA ++L  M+ 
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS 356

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + + P+   ++TL+ GF   G V  A + F  M S
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391



 Score = 94.7 bits (234), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 103/231 (44%), Gaps = 6/231 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   + K  + +  + L K +   G+ PD  TY  +I+ +C++G +     +L  +L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P  V F  L+ G C    + +   L   +   G  P+ ITY+TL+   C      
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               +++ M N     GV   P++ TY  +I G CK   + +A  L+ +M +K   P V 
Sbjct: 626 TTTKIYKRMRNQ----GVA--PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVT 679

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +YN+LI  F       EA  L  EM   G+  D   +N  +D   + G ++
Sbjct: 680 SYNALIKRFYKKKKILEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 36/145 (24%), Positives = 67/145 (46%), Gaps = 1/145 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +  +ML     P  +T +N L          +T   ++KR+ + G+ PD  TYNILI   
Sbjct: 595 LLGWMLEKGIVPDAIT-YNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGH 653

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK   +   + +   ++   + P   ++ +LIK    + +I+EA  LF +++  G   + 
Sbjct: 654 CKARNLKEAWFLYKEMIEKGYVPTVTSYNALIKRFYKKKKILEARELFEEMRGHGLVADG 713

Query: 213 ITYSTLINGLCRTGHTIVALNLFEE 237
             Y+  ++     G   + LNL +E
Sbjct: 714 EIYNFFVDMCYEEGDVEITLNLCDE 738



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           PN + +      L + G + +A++L  ++    +   V + N+ +     AN+       
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI--ANNSEGIEMA 245

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           +    + G+  +  ++N+I+  LC+ GK+ EA RLL  M  R   P+  ++ST++DG+C 
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            G +  A +L   M+  G K   ++Y
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTY 331


>gi|357115764|ref|XP_003559656.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 867

 Score =  181 bits (458), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 107/309 (34%), Positives = 158/309 (51%), Gaps = 12/309 (3%)

Query: 86  TPNEAFCIFDYMLNMRPSPP--PLT--SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
            P  A  +F+ +      P   PLT  ++ +L  C  + +  D   + F RL   GL  D
Sbjct: 140 APALAVALFNRICREEAGPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTD 199

Query: 142 LYTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
               N  + C C   R      ++L R+      PDA ++ ++IK LC  SR  EA  + 
Sbjct: 200 GIVTNTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDML 259

Query: 201 TKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            ++ K  GC P+V++Y+ +I+GL   G    A NLF EM       GVV  PN VTY +I
Sbjct: 260 LRMTKGDGCSPDVVSYTMVIHGLFMEGEISKACNLFNEMVQK----GVV--PNVVTYNSI 313

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+ +  QM D +I PD VTY ++IHG+     W EA  +  EM  +G+
Sbjct: 314 VHALCKARAMDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGL 373

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD+VTFN +MD LCK+ +  EA+ +   +  +G  P+  ++S L+ G+   GR      
Sbjct: 374 IPDIVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNN 433

Query: 380 LFVSMESMG 388
           LF SM   G
Sbjct: 434 LFHSMTDNG 442



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/324 (31%), Positives = 165/324 (50%), Gaps = 23/324 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTV---------LSLFKRLNSTGL 138
            +A  +FD +L  + +P    + N     LA+ +  D+V         ++LF R+     
Sbjct: 100 EDAHHLFDELLR-QDTPVHGRALNGFLAALARAR--DSVACSDAPALAVALFNRICREEA 156

Query: 139 FPDL-----YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
            P +     +TY IL++C C+  R   G     R+LR+    D +   + +K LC   R 
Sbjct: 157 GPRVVPLTVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTDGIVTNTFLKCLCYAKRT 216

Query: 194 MEA-AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
            EA + L  ++   GC P+  +Y+T+I  LC    +  AL++   M  G+G     C P+
Sbjct: 217 DEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMTKGDG-----CSPD 271

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            V+YT +I GL  EG + KA  LF +M  K + P+VVTYNS++H  C A   ++A  +L 
Sbjct: 272 VVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELVLR 331

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           +M D  +QPD VT+  ++      G+  EA+++ + M   G+ P+  TF++LMD  C   
Sbjct: 332 QMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCKHK 391

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           R   A E+F S+ + G K  + SY
Sbjct: 392 RSKEAAEIFHSIATKGHKPDIISY 415



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 159/308 (51%), Gaps = 6/308 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF + +  +   P + S+++L    A    +  + +LF  +   G+  D + +NIL
Sbjct: 395 EAAEIF-HSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFHSMTDNGIVADSHCFNIL 453

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   K G +    ++   +     +P+ V + ++I  LC   R+ +A    +++ + G 
Sbjct: 454 INAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMISIGL 513

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPN + Y +LI G C  G  I A  L  EM +       + +PN   +++II  LC EG 
Sbjct: 514 KPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG-----IPRPNITFFSSIIHSLCNEGR 568

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V  A+++F  +      PD+ T+NSLI G+C     ++A  +L  M+  G +PDVVT++ 
Sbjct: 569 VMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDVVTYST 628

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++   K+G++D+   L   M+ + V P T T+S ++DG    GR + AK++F  M   G
Sbjct: 629 LINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHEMIESG 688

Query: 389 CKHTVFSY 396
              ++ +Y
Sbjct: 689 TAMSISTY 696



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 143/285 (50%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+ ++   L          +LF  +   G+ P++ TYN +++  CK   +    +V
Sbjct: 270 PDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARAMDKAELV 329

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  +   PD V +T++I G     R  EAA +F ++   G  P+++T+++L++ LC+
Sbjct: 330 LRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMTREGLIPDIVTFNSLMDSLCK 389

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG-FVDKAKELFLQMKDKN 283
              +  A  +F  +A    K      P+ ++Y+ ++ G   EG FVD    LF  M D  
Sbjct: 390 HKRSKEAAEIFHSIATKGHK------PDIISYSILLHGYATEGRFVD-MNNLFHSMTDNG 442

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D   +N LI+        +EA  +  EM  QGV P+VVT+  ++  LC+ G++ +A 
Sbjct: 443 IVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAM 502

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             L  MI  G+ PNT  + +L+ GFC  G +  AKEL   M   G
Sbjct: 503 EKLSQMISIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQG 547



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 151/324 (46%), Gaps = 45/324 (13%)

Query: 111 NLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           N    CL   K  D  LS L  R++  G  PD ++YN +I   C   R      +L R+ 
Sbjct: 204 NTFLKCLCYAKRTDEALSMLLHRMSELGCVPDAFSYNTVIKSLCGGSRSQEALDMLLRMT 263

Query: 170 RS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT-- 225
           +   C +PD V++T +I GL  E  I +A  LF ++   G  PNV+TY+++++ LC+   
Sbjct: 264 KGDGC-SPDVVSYTMVIHGLFMEGEISKACNLFNEMVQKGVVPNVVTYNSIVHALCKARA 322

Query: 226 ---------------------------------GHTIVALNLFEEMANGNGKFGVVCKPN 252
                                            G    A  +F+EM     + G++  P+
Sbjct: 323 MDKAELVLRQMFDNSIQPDEVTYTAMIHGYSCLGRWKEAAKMFKEMT----REGLI--PD 376

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            VT+ +++D LCK     +A E+F  +  K   PD+++Y+ L+HG+     + + N L  
Sbjct: 377 IVTFNSLMDSLCKHKRSKEAAEIFHSIATKGHKPDIISYSILLHGYATEGRFVDMNNLFH 436

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M D G+  D   FN++++   K G MDEA  +   M  +GV+PN  T++T++   C  G
Sbjct: 437 SMTDNGIVADSHCFNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMG 496

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           R+  A E    M S+G K     Y
Sbjct: 497 RLADAMEKLSQMISIGLKPNTVVY 520



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 148/285 (51%), Gaps = 7/285 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+L    AK    D  L +F  +   G+ P++ TY  +I   C+MGR++     L +++
Sbjct: 450 FNILINAHAKRGMMDEALLIFTEMRGQGVSPNVVTYATVIAALCRMGRLADAMEKLSQMI 509

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                P+ V + SLI+G C    +++A  L +++   G  +PN+  +S++I+ LC  G  
Sbjct: 510 SIGLKPNTVVYHSLIQGFCTHGDLIKAKELVSEMMDQGIPRPNITFFSSIIHSLCNEGRV 569

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F      N    +  +P+  T+ ++IDG C  G +DKA  +   M      PDV
Sbjct: 570 MNAQDVF------NLVIHIGDRPDIFTFNSLIDGYCLVGKMDKAFGVLDAMVSAGTEPDV 623

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY++LI+G+  +   ++   L  EM+ + V+P  VT+++++D L + G+   A ++   
Sbjct: 624 VTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYSLVLDGLFRAGRTSAAKKMFHE 683

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           MI  G   + ST++ ++ G C     + A  LF  + +M  K  +
Sbjct: 684 MIESGTAMSISTYTIILQGLCRNNCTDEAITLFHKLGAMNLKFEI 728



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 130/281 (46%), Gaps = 6/281 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M++     P +T F+ +   L           +F  +   G  PD++T+N LI+ +C +G
Sbjct: 543 MMDQGIPRPNITFFSSIIHSLCNEGRVMNAQDVFNLVIHIGDRPDIFTFNSLIDGYCLVG 602

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F VL  ++ +   PD V +++LI G     RI +   LF ++     KP  +TYS
Sbjct: 603 KMDKAFGVLDAMVSAGTEPDVVTYSTLINGYFKSGRIDDGLILFREMLCKRVKPTTVTYS 662

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            +++GL R G T  A  +F EM        +       TYT I+ GLC+    D+A  LF
Sbjct: 663 LVLDGLFRAGRTSAAKKMFHEMIESGTAMSIS------TYTIILQGLCRNNCTDEAITLF 716

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            ++   N+  ++   N++IH         EA+ L   +   G+ P+  T+ V++  L K 
Sbjct: 717 HKLGAMNLKFEIAILNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKE 776

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G ++EA  +   M   G  P++   + ++      G +  A
Sbjct: 777 GSVEEADIMFSSMEKTGCAPSSRLLNDIIRMLLQKGEIVKA 817



 Score = 39.3 bits (90), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 49/117 (41%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            N +   L K K  +    LF  ++++GL P+  TY ++I    K G V    ++   + 
Sbjct: 731 LNTMIHALYKVKRREEAHDLFASVSASGLVPNASTYGVMIINLLKEGSVEEADIMFSSME 790

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++   P +     +I+ L  +  I++A    +K+          T S LI+     G
Sbjct: 791 KTGCAPSSRLLNDIIRMLLQKGEIVKAGYYMSKVDGTIISLEASTTSLLISLFASKG 847


>gi|449532420|ref|XP_004173179.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g05670, mitochondrial-like [Cucumis sativus]
          Length = 748

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 165/334 (49%), Gaps = 41/334 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R S P + S++ +             L L   +   GL P+ YTYN +I   CK+G+
Sbjct: 284 MDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGK 343

Query: 158 -------------------------VSHGFVVLGRI----------LRSCFTPDAVAFTS 182
                                    + HGF  LG +          L    +PD + +T+
Sbjct: 344 SFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLSKKISPDYITYTT 403

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+G     +++E   LF ++ + G KP+ +TY+TLI+  C+ G  + A +L  EM    
Sbjct: 404 LIQGFGQGGKVIEPQNLFHEMISRGLKPDEVTYTTLIDVYCKAGEMVNAFSLHNEMV--- 460

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            + G+   PN VTY  +IDGLCK G +D A EL  +M+ K +  +V  YNS+++G C A 
Sbjct: 461 -QMGMT--PNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMVNGICKAG 517

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +  +A  L+ EM   G+ PD +T+  ++D  C+ G +D+A +LL+ M+ RG+ P   TF+
Sbjct: 518 NIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQPTVVTFN 577

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM+GFC+ G +     L   M   G      +Y
Sbjct: 578 VLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITY 611



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 166/303 (54%), Gaps = 7/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD ML+ + SP  +T   L+ G     K  +   +LF  + S GL PD  TY  LI+ +C
Sbjct: 386 FDEMLSKKISPDYITYTTLIQGFGQGGKVIEPQ-NLFHEMISRGLKPDEVTYTTLIDVYC 444

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K G + + F +   +++   TP+ V + +LI GLC    +  A  L  +++  G + NV 
Sbjct: 445 KAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLDEMRKKGLQLNVC 504

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y++++NG+C+ G+   A+ L +EM            P+ +TYTT+ID  C+ G +DKA 
Sbjct: 505 IYNSMVNGICKAGNIEQAIKLMKEMEVAG------IDPDAITYTTVIDAYCRLGDIDKAH 558

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L  +M D+ + P VVT+N L++GFC      + + LL  M+++G+ PD +T+N +M + 
Sbjct: 559 KLLQEMLDRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQH 618

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C    M+  +++ + M  +GV P+++T++ L+ G C    +  A  L+  M   G   TV
Sbjct: 619 CIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTV 678

Query: 394 FSY 396
            SY
Sbjct: 679 TSY 681



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 148/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           TS+N++   L +         L  +++     PD+ +Y+ +I+ +C +G +     ++  
Sbjct: 259 TSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCHLGELKKALKLMDD 318

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+   + S+I  LC   +  EA  +  ++ +    P+ + Y+TLI+G  + GH
Sbjct: 319 MQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMSQKIIPDNVVYTTLIHGFFKLGH 378

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A   F+EM +          P+ +TYTT+I G  + G V + + LF +M  + + PD
Sbjct: 379 VRTANKWFDEMLSKK------ISPDYITYTTLIQGFGQGGKVIEPQNLFHEMISRGLKPD 432

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTY +LI  +C A +   A  L  EM+  G+ P++VT+  ++D LCK+G++D A+ LL+
Sbjct: 433 EVTYTTLIDVYCKAGEMVNAFSLHNEMVQMGMTPNIVTYGALIDGLCKHGELDTANELLD 492

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  +G+  N   ++++++G C  G +  A +L   ME  G      +Y
Sbjct: 493 EMRKKGLQLNVCIYNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITY 541



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/277 (27%), Positives = 132/277 (47%), Gaps = 7/277 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + + M+ M  +P  +T +  L   L K    DT   L   +   GL  ++  YN ++
Sbjct: 452 AFSLHNEMVQMGMTPNIVT-YGALIDGLCKHGELDTANELLDEMRKKGLQLNVCIYNSMV 510

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK G +     ++  +  +   PDA+ +T++I   C    I +A  L  ++   G +
Sbjct: 511 NGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEMLDRGLQ 570

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P V+T++ L+NG C  G       L   M       G+V  P+ +TY T++   C    +
Sbjct: 571 PTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEK----GIV--PDAITYNTLMKQHCIRNSM 624

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           +   +++ +M+++ + PD  TYN LI G C A +  EA  L  EM+++G  P V ++N +
Sbjct: 625 NTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVTSYNAL 684

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +    K  K  EA  L E M   G+  +   ++  +D
Sbjct: 685 IKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVD 721



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 114/215 (53%), Gaps = 10/215 (4%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VA 231
           + P+ +AF    + L     + EA  L  KL ++G    V + +  ++ +      I +A
Sbjct: 186 WGPNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRIANNSEGIEMA 245

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           + +F E       +G+    NT +Y  II  LC+ G V +A  L +QM  ++  PDVV+Y
Sbjct: 246 IKVFCE-------YGISW--NTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSY 296

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           +++I G+C+  +  +A  L+ +M  +G++P+  T+N I+  LCK GK  EA ++L  M+ 
Sbjct: 297 STVIDGYCHLGELKKALKLMDDMQIKGLKPNRYTYNSIILLLCKIGKSFEAEKVLREMMS 356

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + + P+   ++TL+ GF   G V  A + F  M S
Sbjct: 357 QKIIPDNVVYTTLIHGFFKLGHVRTANKWFDEMLS 391



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 104/231 (45%), Gaps = 6/231 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   + K  + +  + L K +   G+ PD  TY  +I+ +C++G +     +L  +L
Sbjct: 506 YNSMVNGICKAGNIEQAIKLMKEMEVAGIDPDAITYTTVIDAYCRLGDIDKAHKLLQEML 565

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P  V F  L+ G C    + +   L   +   G  P+ ITY+TL+   C      
Sbjct: 566 DRGLQPTVVTFNVLMNGFCMLGMLEDGDRLLGWMLEKGIVPDAITYNTLMKQHCIRNSMN 625

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               +++ M N     GV   P++ TY  +I G CK   + +A  L+ +M +K   P V 
Sbjct: 626 TTTKIYKRMRNQ----GVA--PDSNTYNILIKGHCKARNLKEAWFLYKEMIEKGYVPTVT 679

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +YN+LI  F     + EA  L  EM   G+  D   +N  +D   + G ++
Sbjct: 680 SYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYEEGDVE 730



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/146 (25%), Positives = 72/146 (49%), Gaps = 2/146 (1%)

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           PN + +      L + G + +A++L  ++    +   V + N+ +     AN+       
Sbjct: 188 PNPIAFDIFFQVLVEIGHLSEARKLLDKLLSYGLVVTVDSCNAFLSRI--ANNSEGIEMA 245

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           +    + G+  +  ++N+I+  LC+ GK+ EA RLL  M  R   P+  ++ST++DG+C 
Sbjct: 246 IKVFCEYGISWNTTSYNIIIYSLCRLGKVKEAHRLLMQMDFRSSTPDVVSYSTVIDGYCH 305

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            G +  A +L   M+  G K   ++Y
Sbjct: 306 LGELKKALKLMDDMQIKGLKPNRYTY 331



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 60/133 (45%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L          +T   ++KR+ + G+ PD  TYNILI   CK   +   + +
Sbjct: 606 PDAITYNTLMKQHCIRNSMNTTTKIYKRMRNQGVAPDSNTYNILIKGHCKARNLKEAWFL 665

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++   + P   ++ +LIK    + +  EA  LF +++  G   +   Y+  ++    
Sbjct: 666 YKEMIEKGYVPTVTSYNALIKRFYKKRKFXEARELFEEMRGHGLVADGEIYNFFVDMCYE 725

Query: 225 TGHTIVALNLFEE 237
            G   + LNL +E
Sbjct: 726 EGDVEITLNLCDE 738


>gi|15221300|ref|NP_177597.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169839|sp|Q9CA58.1|PP120_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g74580
 gi|12324819|gb|AAG52381.1|AC011765_33 hypothetical protein; 77097-79388 [Arabidopsis thaliana]
 gi|332197491|gb|AEE35612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 161/319 (50%), Gaps = 30/319 (9%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++   P P  +T  NL++G    +K  +  + L K +N  GL PD YTYN LI  +CK G
Sbjct: 277 LIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNE-GLEPDSYTYNTLIAGYCKGG 335

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V     ++G  + + F PD   + SLI GLC E     A ALF +    G KPNVI Y+
Sbjct: 336 MVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395

Query: 217 TLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVVCK----------- 250
           TLI GL   G  + A  L  EM+               NG  K G V             
Sbjct: 396 TLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455

Query: 251 ---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+  T+  +I G   +  ++ A E+   M D  ++PDV TYNSL++G C  + + + 
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDV 515

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                 M+++G  P++ TFN++++ LC+  K+DEA  LLE M  + VNP+  TF TL+DG
Sbjct: 516 METYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDG 575

Query: 368 FCLTGRVNHAKELFVSMES 386
           FC  G ++ A  LF  ME 
Sbjct: 576 FCKNGDLDGAYTLFRKMEE 594



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P L ++NL    L +    D  + +   L   G  PD+ TYN LI   CK  +   
Sbjct: 245 RGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQE 304

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             V LG+++     PD+  + +LI G C    +  A  +       G  P+  TY +LI+
Sbjct: 305 AEVYLGKMVNEGLEPDSYTYNTLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLID 364

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC  G T  AL LF E A G G      KPN + Y T+I GL  +G + +A +L  +M 
Sbjct: 365 GLCHEGETNRALALFNE-ALGKG-----IKPNVILYNTLIKGLSNQGMILEAAQLANEMS 418

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K + P+V T+N L++G C     ++A+ L+  M+ +G  PD+ TFN+++       KM+
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  +L++M+  GV+P+  T+++L++G C T +     E + +M   GC   +F++
Sbjct: 479 NALEILDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTF 534



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 155/291 (53%), Gaps = 8/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L++FN L   L K         L  ++   G+ P+L+TYN+ I   C+ G +     ++G
Sbjct: 216 LSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVG 275

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++     PD + + +LI GLC  S+  EA     K+   G +P+  TY+TLI G C+ G
Sbjct: 276 CLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLIAGYCKGG 335

Query: 227 HTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
              +A     E   G+  F G V  P+  TY ++IDGLC EG  ++A  LF +   K I 
Sbjct: 336 MVQLA-----ERIVGDAVFNGFV--PDQFTYRSLIDGLCHEGETNRALALFNEALGKGIK 388

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+V+ YN+LI G        EA  L  EM ++G+ P+V TFN++++ LCK G + +A  L
Sbjct: 389 PNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++MI +G  P+  TF+ L+ G+    ++ +A E+   M   G    V++Y
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTY 499



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 153/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L  + ++D    ++ R+   G+ PD+Y++ I
Sbjct: 93  QEAVNVFERM-DFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +  FCK  R      +L  +       + VA+ +++ G   E+   E   LF K+ A G
Sbjct: 152 RMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASG 211

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
               + T++ L+  LC+ G       L +++     K GV+  PN  TY   I GLC+ G
Sbjct: 212 VSLCLSTFNKLLRVLCKKGDVKECEKLLDKVI----KRGVL--PNLFTYNLFIQGLCQRG 265

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  +   + ++   PDV+TYN+LI+G C  + + EA   L +M+++G++PD  T+N
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   CK G +  A R++   +  G  P+  T+ +L+DG C  G  N A  LF      
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385

Query: 388 GCKHTVFSY 396
           G K  V  Y
Sbjct: 386 GIKPNVILY 394



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L K         L K + S G FPD++T+NILI+ +    ++ +   +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L +   PD   + SL+ GLC  S+  +    +  +   GC PN+ T++ L+  LCR
Sbjct: 484 LDVMLDNGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-N 283
                 AL L EEM N +        P+ VT+ T+IDG CK G +D A  LF +M++   
Sbjct: 544 YRKLDEALGLLEEMKNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYK 597

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++    TYN +IH F    +   A  L  EM+D+ + PD  T+ +++D  CK G ++   
Sbjct: 598 VSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGY 657

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + L  M+  G  P+ +T   +++  C+  RV  A  +   M   G
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKG 702



 Score =  107 bits (268), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 119/254 (46%), Gaps = 10/254 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T +    A  I D ML+     P + ++N L   L KT  ++ V+  +K +   G 
Sbjct: 469 HGYSTQLKMENALEILDVMLD-NGVDPDVYTYNSLLNGLCKTSKFEDVMETYKTMVEKGC 527

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+L+T+NIL+   C+  ++     +L  +      PDAV F +LI G C    +  A  
Sbjct: 528 APNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT 587

Query: 199 LFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
           LF K++ A+    +  TY+ +I+      +  +A  LF+EM +          P+  TY 
Sbjct: 588 LFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR------CLGPDGYTYR 641

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++DG CK G V+   +  L+M +    P + T   +I+  C  +   EA  ++  M+ +
Sbjct: 642 LMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701

Query: 318 GVQPDVVTFNVIMD 331
           G+ P+ V  N I D
Sbjct: 702 GLVPEAV--NTICD 713



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 58/245 (23%), Positives = 118/245 (48%), Gaps = 6/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G+V     V  R+      P   ++ +++  L       +A  ++ +++  G  P+
Sbjct: 86  YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V +++  +   C+T     AL L   M++        C+ N V Y T++ G  +E F  +
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQG------CEMNVVAYCTVVGGFYEENFKAE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             ELF +M    ++  + T+N L+   C   D  E   LL +++ +GV P++ T+N+ + 
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQ 259

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G++D A R++  +I +G  P+  T++ L+ G C   +   A+     M + G + 
Sbjct: 260 GLCQRGELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEP 319

Query: 392 TVFSY 396
             ++Y
Sbjct: 320 DSYTY 324


>gi|242056139|ref|XP_002457215.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
 gi|241929190|gb|EES02335.1| hypothetical protein SORBIDRAFT_03g003430 [Sorghum bicolor]
          Length = 573

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 107/317 (33%), Positives = 164/317 (51%), Gaps = 33/317 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS---HG 161
           P   +FN++   L KT        + K +   GL P + TYN LI+ + K GR     H 
Sbjct: 186 PDKFTFNIVISGLCKTGQLRKAGDVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHV 245

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            ++L  + ++  +P+ V F  LI G C ES I  A  +F +++  G   N++TY++L++G
Sbjct: 246 DMLLKEMNQAGISPNVVTFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSG 305

Query: 222 LCRTGHTIVALNLFEEMA--------------NGNGKFGVVC--------------KPNT 253
           LCR G    ++ L EEM               NG  K G++               KPN 
Sbjct: 306 LCREGKVEDSMKLVEEMEELGLATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNV 365

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY T+IDG  + G + +A      M  K I+PDV TYN LI GF  + DW   + LL E
Sbjct: 366 VTYNTLIDGYQRLGKMKEATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDE 425

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M + GV+ D+VT+NV++  LC  G++ +A +LL+ M+  G+ P   T++ +++GFC  G 
Sbjct: 426 MKETGVKADLVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHRTYNAIINGFCEKGD 485

Query: 374 VNHAKELFVSMESMGCK 390
              A ++ + ME   CK
Sbjct: 486 AKGAHDIRIRMEK--CK 500



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/295 (29%), Positives = 146/295 (49%), Gaps = 10/295 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S N L   L +    D     F+      + PD +T+NI+I+  CK G++     V
Sbjct: 151 PSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAGDV 210

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESR---IMEAAALFTKLKAFGCKPNVITYSTLING 221
              +      P  V + +LI G     R   +     L  ++   G  PNV+T++ LING
Sbjct: 211 AKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLING 270

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+  +   A+ +FEEM     + G+    N VTYT+++ GLC+EG V+ + +L  +M++
Sbjct: 271 YCKESNITAAIKVFEEMR----QHGIPA--NMVTYTSLVSGLCREGKVEDSMKLVEEMEE 324

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             +   + T NS+++GFC      EA   +  M  +G++P+VVT+N ++D   + GKM E
Sbjct: 325 LGL-ATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKE 383

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A+     M  +G++P+  T++ L+ GF  +        L   M+  G K  + +Y
Sbjct: 384 ATAAKGAMAGKGISPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGVKADLVTY 438



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 147/342 (42%), Gaps = 78/342 (22%)

Query: 105 PPLTSFNLL------FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           P + ++N L      +G   K  H D    L K +N  G+ P++ T+N+LIN +CK   +
Sbjct: 221 PSVVTYNTLIDGYYKWGRAGKMYHVDM---LLKEMNQAGISPNVVTFNVLINGYCKESNI 277

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC---------- 208
           +    V   + +     + V +TSL+ GLC E ++ ++  L  +++  G           
Sbjct: 278 TAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEMEELGLATLPTLNSVL 337

Query: 209 ------------------------KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG- 243
                                   KPNV+TY+TLI+G  R G    A      MA G G 
Sbjct: 338 NGFCKKGMMVEAEGWVDGMAQKGMKPNVVTYNTLIDGYQRLGKMKEATAAKGAMA-GKGI 396

Query: 244 -------------------------------KFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
                                          + GV  K + VTY  +I  LC +G V KA
Sbjct: 397 SPDVKTYNCLITGFTTSTDWRSVSGLLDEMKETGV--KADLVTYNVLIGALCCKGEVRKA 454

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L  +M +  + P   TYN++I+GFC   D   A+ + I M     + +VVT NV +  
Sbjct: 455 VKLLDEMVEVGLEPKHRTYNAIINGFCEKGDAKGAHDIRIRMEKCKKRANVVTCNVFLKY 514

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            CK GKMDEA+ +L  M+ +G+ PN  T+  +  G    G V
Sbjct: 515 FCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYV 556



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/227 (29%), Positives = 120/227 (52%), Gaps = 10/227 (4%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + P A +  +L+  L    R+  A   F         P+  T++ +I+GLC+TG    A 
Sbjct: 149 YRPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAG 208

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN---INPDVV 289
           ++ ++M      +G++  P+ VTY T+IDG  K G   K   + + +K+ N   I+P+VV
Sbjct: 209 DVAKDMRG----WGLM--PSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVV 262

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+N LI+G+C  ++   A  +  EM   G+  ++VT+  ++  LC+ GK++++ +L+E M
Sbjct: 263 TFNVLINGYCKESNITAAIKVFEEMRQHGIPANMVTYTSLVSGLCREGKVEDSMKLVEEM 322

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+     T +++++GFC  G +  A+     M   G K  V +Y
Sbjct: 323 EELGL-ATLPTLNSVLNGFCKKGMMVEAEGWVDGMAQKGMKPNVVTY 368



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/211 (24%), Positives = 93/211 (44%), Gaps = 10/211 (4%)

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           A  R+   A++   L+A       +    L+  L R    + A   F        ++   
Sbjct: 96  AAGRLHSPASI---LRALPASSRPLVADMLVLALARASQPLAAYGAFLLAGADYPRY--- 149

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            +P+  +   ++  L +   VD A+  F     + ++PD  T+N +I G C      +A 
Sbjct: 150 -RPSAFSVNALLAALVRADRVDLAERAFRAALRRRVSPDKFTFNIVISGLCKTGQLRKAG 208

Query: 309 CLLIEMMDQGVQPDVVTFNVIMD---ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            +  +M   G+ P VVT+N ++D   +  + GKM     LL+ M   G++PN  TF+ L+
Sbjct: 209 DVAKDMRGWGLMPSVVTYNTLIDGYYKWGRAGKMYHVDMLLKEMNQAGISPNVVTFNVLI 268

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +G+C    +  A ++F  M   G    + +Y
Sbjct: 269 NGYCKESNITAAIKVFEEMRQHGIPANMVTY 299


>gi|255558280|ref|XP_002520167.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540659|gb|EEF42222.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 107/292 (36%), Positives = 161/292 (55%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+  +            V+ L K +   GL P+LYTY+ +I   CK G+V  G  V
Sbjct: 143 PDVVSYTTIIDGYCHVGELQKVVQLVKEMQLKGLKPNLYTYSSIILLLCKSGKVVEGEKV 202

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++    PD V +T+LI G C       A  LF++++A    P+ I +S LI GL  
Sbjct: 203 LREMMKRGVFPDHVIYTTLIDGFCKLGNTQAAYKLFSEMEAREIVPDSIAFSALICGLSG 262

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G  + A  LF EM     K G   +P+ VTYT +IDG CK G + KA  L  QM    +
Sbjct: 263 SGKVVEADKLFNEMI----KKGF--EPDEVTYTALIDGYCKLGEMKKAFFLHNQMVQIGL 316

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVTY +L  G C + + + AN LL EM  +G+Q ++ T+N I++ LCK G + +A +
Sbjct: 317 TPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQLNISTYNTIVNGLCKAGNILQAVK 376

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+E M   G++P+T T++TLMD +  TG +  A+EL   M   G + TV ++
Sbjct: 377 LMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLREMLDRGLQPTVVTF 428



 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 158/299 (52%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + ++   P L +++ +   L K+        + + +   G+FPD   Y  LI+ FCK+G 
Sbjct: 171 MQLKGLKPNLYTYSSIILLLCKSGKVVEGEKVLREMMKRGVFPDHVIYTTLIDGFCKLGN 230

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
               + +   +      PD++AF++LI GL    +++EA  LF ++   G +P+ +TY+ 
Sbjct: 231 TQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTA 290

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G    A  L  +M        +   PN VTYT + DGLCK G +D A EL  
Sbjct: 291 LIDGYCKLGEMKKAFFLHNQMVQ------IGLTPNVVTYTALADGLCKSGELDTANELLH 344

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  K +  ++ TYN++++G C A +  +A  L+ EM + G+ PD +T+  +MD   K G
Sbjct: 345 EMCRKGLQLNISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTG 404

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +M +A  LL  M+ RG+ P   TF+ LM+G C++G++   + L   M   G      +Y
Sbjct: 405 EMVKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATY 463



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 163/310 (52%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA-KTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA   FD +LN   +     S NL   CL+ K      VL +F      G+  +  +YN
Sbjct: 56  NEARKFFDKLLNYGVALSA-GSCNLYLTCLSSKRDMLGMVLKVFSEFPQLGVCWNTESYN 114

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           IL+N   ++G++     +L R+      PD V++T++I G C    + +   L  +++  
Sbjct: 115 ILMNSLFRLGKIREAHHLLMRMEFKGCIPDVVSYTTIIDGYCHVGELQKVVQLVKEMQLK 174

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KPN+ TYS++I  LC++G  +    +  EM     K GV   P+ V YTT+IDG CK 
Sbjct: 175 GLKPNLYTYSSIILLLCKSGKVVEGEKVLREMM----KRGVF--PDHVIYTTLIDGFCKL 228

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A +LF +M+ + I PD + +++LI G   +    EA+ L  EM+ +G +PD VT+
Sbjct: 229 GNTQAAYKLFSEMEAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTY 288

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CK G+M +A  L   M+  G+ PN  T++ L DG C +G ++ A EL   M  
Sbjct: 289 TALIDGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCR 348

Query: 387 MGCKHTVFSY 396
            G +  + +Y
Sbjct: 349 KGLQLNISTY 358



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 150/280 (53%), Gaps = 7/280 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ +F  M   R   P   +F+ L   L+ +        LF  +   G  PD  TY  LI
Sbjct: 234 AYKLFSEM-EAREIVPDSIAFSALICGLSGSGKVVEADKLFNEMIKKGFEPDEVTYTALI 292

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK+G +   F +  ++++   TP+ V +T+L  GLC    +  A  L  ++   G +
Sbjct: 293 DGYCKLGEMKKAFFLHNQMVQIGLTPNVVTYTALADGLCKSGELDTANELLHEMCRKGLQ 352

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            N+ TY+T++NGLC+ G+ + A+ L EEM            P+T+TYTT++D   K G +
Sbjct: 353 LNISTYNTIVNGLCKAGNILQAVKLMEEMKEAG------LHPDTITYTTLMDAYYKTGEM 406

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA+EL  +M D+ + P VVT+N L++G C +    +   LL  M+++G+ P+  T+N I
Sbjct: 407 VKARELLREMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSI 466

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           M + C    M  ++ +   M  +GV P+++T++ L+ G C
Sbjct: 467 MKQYCIRNNMRISTEIYRGMCAQGVVPDSNTYNILIKGHC 506



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 106/234 (45%), Gaps = 6/234 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++++N +   L K  +    + L + +   GL PD  TY  L++ + K G +     +L 
Sbjct: 355 ISTYNTIVNGLCKAGNILQAVKLMEEMKEAGLHPDTITYTTLMDAYYKTGEMVKARELLR 414

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L     P  V F  L+ GLC   ++ +   L   +   G  PN  TY++++   C   
Sbjct: 415 EMLDRGLQPTVVTFNVLMNGLCMSGKLEDGERLLKWMLEKGIMPNAATYNSIMKQYCIRN 474

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +  ++  ++  M       GVV  P++ TY  +I G CK   + +A  L  +M +K  N 
Sbjct: 475 NMRISTEIYRGMCAQ----GVV--PDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNL 528

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +YN+LI GF       EA  L  EM  +G+      +N+ +D   + G M+
Sbjct: 529 TASSYNALIKGFFKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNME 582



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/110 (24%), Positives = 53/110 (48%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
            +++ + + G+ PD  TYNILI   CK   +   + +   ++   F   A ++ +LIKG 
Sbjct: 481 EIYRGMCAQGVVPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKRFNLTASSYNALIKGF 540

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
               +++EA  LF +++  G   +   Y+  ++     G+    L L +E
Sbjct: 541 FKRKKLLEARQLFEEMRREGLVASAEIYNLFVDMNYEEGNMETTLELCDE 590


>gi|255542744|ref|XP_002512435.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548396|gb|EEF49887.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 546

 Score =  180 bits (457), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 105/334 (31%), Positives = 164/334 (49%), Gaps = 44/334 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P L SFN++   L K    +    + + +   G+  ++ TYN LI+ +CKMG++  
Sbjct: 157 RRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGK 216

Query: 161 GF---VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
            +    +L  +      P+ V F  LI G C +  +  A  +F ++   G KPNV+TY++
Sbjct: 217 MYKADAILKEMRADGICPNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNS 276

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LINGLC  G    A  L ++M N         KPN +T+  +++G CK   V +A ELF 
Sbjct: 277 LINGLCNNGKVNEATALRDQMVNS------CLKPNIITHNALLNGFCKNKMVKQAGELFD 330

Query: 278 QM--------------------KDKNIN---------------PDVVTYNSLIHGFCYAN 302
            M                    KD+N+                PDV TYN LI G C   
Sbjct: 331 DMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKG 390

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D   A  L+ EM  + ++ D++T+N+++D LC  G+M +A RLL+ M  +G+ P+  T++
Sbjct: 391 DLEAARNLVSEMDTKHLKADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYN 450

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++DG+C  G +  A  L   ME +G    V +Y
Sbjct: 451 TMIDGYCKEGNLRAALNLRSQMEKVGRLANVATY 484



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 165/293 (56%), Gaps = 9/293 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +TS N L   L K      +  ++K +    + P L ++NI+IN  CK+G+++    ++ 
Sbjct: 128 VTSCNPLMSGLVKVGEIGDMEFVYKEMIRRRIEPTLISFNIVINGLCKVGKLNKAGDIIE 187

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRI---MEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +     + + + + +LI G C   +I    +A A+  +++A G  PN +T++ LI+G C
Sbjct: 188 DMKVRGVSANVITYNTLIDGYCKMGKIGKMYKADAILKEMRADGICPNEVTFNILIDGFC 247

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +  +   A+ +F EM     + GV  KPN VTY ++I+GLC  G V++A  L  QM +  
Sbjct: 248 KDKNVSAAMKVFAEM----NRQGV--KPNVVTYNSLINGLCNNGKVNEATALRDQMVNSC 301

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+++T+N+L++GFC      +A  L  +M  QG+ P+V T+N+++D  CK+  M++A 
Sbjct: 302 LKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCKDENMEDAF 361

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  +M+ +GV P+ ST++ L+ G C  G +  A+ L   M++   K  + +Y
Sbjct: 362 ALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITY 414



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN+L     K K+    + +F  +N  G+ P++ TYN LIN  C  G+V+    +
Sbjct: 234 PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATAL 293

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++ SC  P+ +   +L+ G C    + +A  LF  +   G  PNV TY+ LI+  C+
Sbjct: 294 RDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELFDDMPKQGITPNVTTYNILIDAYCK 353

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  L+  M  G G    VC P+  TY  +I GLC++G ++ A+ L  +M  K++
Sbjct: 354 DENMEDAFALYRIML-GKG----VC-PDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHL 407

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D++TYN LI   C   +  +A  LL EM  +G++P  +T+N ++D  CK G +  A  
Sbjct: 408 KADLITYNILIDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALN 467

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M   G   N +T++ L+ GFC   ++  A  L   M   G      +Y
Sbjct: 468 LRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTY 519



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 151/290 (52%), Gaps = 11/290 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           ++L    AK          FKR +  GL   + + N L++   K+G +     V   ++R
Sbjct: 97  DILVWAYAKNLRTRLGFEAFKRASDYGLKLSVTSCNPLMSGLVKVGEIGDMEFVYKEMIR 156

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC---RTGH 227
               P  ++F  +I GLC   ++ +A  +   +K  G   NVITY+TLI+G C   + G 
Sbjct: 157 RRIEPTLISFNIVINGLCKVGKLNKAGDIIEDMKVRGVSANVITYNTLIDGYCKMGKIGK 216

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A  + +EM A+G      +C PN VT+  +IDG CK+  V  A ++F +M  + + P
Sbjct: 217 MYKADAILKEMRADG------IC-PNEVTFNILIDGFCKDKNVSAAMKVFAEMNRQGVKP 269

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +VVTYNSLI+G C     NEA  L  +M++  ++P+++T N +++  CKN  + +A  L 
Sbjct: 270 NVVTYNSLINGLCNNGKVNEATALRDQMVNSCLKPNIITHNALLNGFCKNKMVKQAGELF 329

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  +G+ PN +T++ L+D +C    +  A  L+  M   G    V +Y
Sbjct: 330 DDMPKQGITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVCPDVSTY 379



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 132/250 (52%), Gaps = 7/250 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + D M+N    P  +T   LL G   K K       LF  +   G+ P++ TYNI
Sbjct: 288 NEATALRDQMVNSCLKPNIITHNALLNG-FCKNKMVKQAGELFDDMPKQGITPNVTTYNI 346

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CK   +   F +   +L     PD   +  LI GLC +  +  A  L +++    
Sbjct: 347 LIDAYCKDENMEDAFALYRIMLGKGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKH 406

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K ++ITY+ LI+ LC  G    AL L +EM     + G+  KP+ +TY T+IDG CKEG
Sbjct: 407 LKADLITYNILIDSLCNKGEMKKALRLLDEMC----RKGL--KPSQLTYNTMIDGYCKEG 460

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A  L  QM+      +V TYN LI GFC  +   +AN LL EM+++G+ P+ +T+ 
Sbjct: 461 NLRAALNLRSQMEKVGRLANVATYNVLIKGFCKKDKLEDANGLLNEMLEKGLIPNRMTYE 520

Query: 328 VIMDELCKNG 337
           ++ +E+ + G
Sbjct: 521 IVTEEMMEKG 530



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 7/181 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF ++  ML  +   P ++++N L   L +    +   +L   +++  L  DL TYNIL
Sbjct: 359 DAFALYRIMLG-KGVCPDVSTYNCLIAGLCRKGDLEAARNLVSEMDTKHLKADLITYNIL 417

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G +     +L  + R    P  + + ++I G C E  +  A  L ++++  G 
Sbjct: 418 IDSLCNKGEMKKALRLLDEMCRKGLKPSQLTYNTMIDGYCKEGNLRAALNLRSQMEKVGR 477

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             NV TY+ LI G C+      A  L  EM     + G++  PN +TY  + + + ++GF
Sbjct: 478 LANVATYNVLIKGFCKKDKLEDANGLLNEML----EKGLI--PNRMTYEIVTEEMMEKGF 531

Query: 269 V 269
           V
Sbjct: 532 V 532


>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
          Length = 649

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/317 (30%), Positives = 165/317 (52%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A     A  + D M N R   P + ++N +   L K + +D    +F+ ++   + 
Sbjct: 206 GDVDA-----AIALVDSMAN-RGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVA 259

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ ++NILI  FC++G V         +     TPD V+F+ LI        +  A A 
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++K  G  P+ + Y+ +I G CR G    AL + +EM       G  C P+ VTY T+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMV------GFGCLPDVVTYNTL 373

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++GLCK+  +  A++L  +M+++ + PD+ T+ +LIHG+C   ++  A  L   ++ Q +
Sbjct: 374 LNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRL 433

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PDVVT+N ++D +C+ G + +A+ L + M  R + PN  T+S L+D  C  G+V  A  
Sbjct: 434 RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFG 493

Query: 380 LFVSMESMGCKHTVFSY 396
               M   G    + +Y
Sbjct: 494 FLDEMVKKGNLPNIRTY 510



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 153/282 (54%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN+L G   +       +  +K +    + PD+ +++ LI  F + G + H    
Sbjct: 260 PDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAY 319

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD V +T +I G C    + EA  +  ++  FGC P+V+TY+TL+NGLC+
Sbjct: 320 LREMKGLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCK 379

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  L  EM     + GV   P+  T+TT+I G C++G  + A +LF  +  + +
Sbjct: 380 QHRLLDAEKLLNEME----ERGVT--PDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRL 433

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTYNSLI G C   D  +AN L  +M  + + P+ +T+++++D  C+ G++++A  
Sbjct: 434 RPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCEKGQVEDAFG 493

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            L+ M+ +G  PN  T+++++ G+C +G V   ++    M  
Sbjct: 494 FLDEMVKKGNLPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQ 535



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 141/285 (49%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K         L   +   G+ PDL T+  LI+ +C+ G   +   +
Sbjct: 365 PDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQL 424

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR    PD V + SLI G+C +  + +A  L+  + A    PN ITYS LI+  C 
Sbjct: 425 FDTLLRQRLRPDVVTYNSLIDGMCRKGDLAKANELWDDMHAREILPNHITYSILIDSHCE 484

Query: 225 TGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G    A    +EM   GN        PN  TY +II G C+ G V K ++   +M+  N
Sbjct: 485 KGQVEDAFGFLDEMVKKGN-------LPNIRTYNSIIKGYCRSGNVKKGQQFLQKMRQDN 537

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD++T+N+LIHG+    + + A  +   M  + V+PD VT+N+I++   + G M +A 
Sbjct: 538 VFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNMIINGFSEQGNMQDAG 597

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           R+ + M   G+ P+  T+ +L++G    G    A +L   M   G
Sbjct: 598 RVFKGMGDSGIEPDRYTYMSLINGHVTAGNSKQAFQLHDEMIHRG 642



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 146/288 (50%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++     KT  +D   ++   +    +FPD+ T+N+LI+   + G V     ++  +
Sbjct: 159 TLNIMVHSYCKTLEFDGADTVISEMEKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSM 218

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P  V + S++KGLC   R  +A  +F  +      P+V +++ LI G CR G  
Sbjct: 219 ANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEV 278

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+  ++EM +          P+ V+++ +I    + G +D A     +MK   + PD 
Sbjct: 279 KEAVKFYKEMQH------RYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDG 332

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  +I GFC A   +EA  +  EM+  G  PDVVT+N +++ LCK  ++ +A +LL  
Sbjct: 333 VIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNE 392

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL+ G+C  G   +A +LF ++     +  V +Y
Sbjct: 393 MEERGVTPDLCTFTTLIHGYCRQGNFENALQLFDTLLRQRLRPDVVTY 440



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 88/334 (26%), Positives = 155/334 (46%), Gaps = 41/334 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + SF+ L G  ++    D   +  + +   GL PD   Y ++I  FC+ G 
Sbjct: 288 MQHRYVTPDVVSFSCLIGLFSRRGEMDHAGAYLREMKGLGLVPDGVIYTMVIGGFCRAGS 347

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +S    V   ++     PD V + +L+ GLC + R+++A  L  +++  G  P++ T++T
Sbjct: 348 MSEALRVRDEMVGFGCLPDVVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTT 407

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G CR G+   AL LF+ +           +P+ VTY ++IDG+C++G + KA EL+ 
Sbjct: 408 LIHGYCRQGNFENALQLFDTLLRQR------LRPDVVTYNSLIDGMCRKGDLAKANELWD 461

Query: 278 QMKDKNINPD-----------------------------------VVTYNSLIHGFCYAN 302
            M  + I P+                                   + TYNS+I G+C + 
Sbjct: 462 DMHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSG 521

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +  +    L +M    V PD++TFN ++    K   M  A  +  +M    V P+  T++
Sbjct: 522 NVKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYN 581

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++GF   G +  A  +F  M   G +   ++Y
Sbjct: 582 MIINGFSEQGNMQDAGRVFKGMGDSGIEPDRYTY 615



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 110/249 (44%), Gaps = 6/249 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P    +++LI  + +  +    F     +L       A A  +L+  L        A   
Sbjct: 85  PQPQVFDLLIRTYTQSRKPREAFEAFRLLLDHRVPVPASASNALLAVLSRAGWPHLAQEA 144

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           +  + +   + N  T + +++  C+T     A  +  EM            P+ VT+  +
Sbjct: 145 YRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEK------RCVFPDVVTHNVL 198

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ID   + G VD A  L   M ++ + P +VTYNS++ G C    +++A  +   M    V
Sbjct: 199 IDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFRTMDQCSV 258

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDV +FN+++   C+ G++ EA +  + M  R V P+  +FS L+  F   G ++HA  
Sbjct: 259 APDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLFSRRGEMDHAGA 318

Query: 380 LFVSMESMG 388
               M+ +G
Sbjct: 319 YLREMKGLG 327



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 46/190 (24%), Positives = 87/190 (45%), Gaps = 6/190 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R   P   ++++L     +    +        +   G  P++ TYN +I  +C+ G 
Sbjct: 463 MHAREILPNHITYSILIDSHCEKGQVEDAFGFLDEMVKKGNLPNIRTYNSIIKGYCRSGN 522

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V  G   L ++ +    PD + F +LI G   E  +  A  +F  ++    +P+ +TY+ 
Sbjct: 523 VKKGQQFLQKMRQDNVFPDLITFNTLIHGYIKEENMHGAFNVFNIMEKEMVRPDAVTYNM 582

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +ING    G+   A  +F+    G G  G+  +P+  TY ++I+G    G   +A +L  
Sbjct: 583 IINGFSEQGNMQDAGRVFK----GMGDSGI--EPDRYTYMSLINGHVTAGNSKQAFQLHD 636

Query: 278 QMKDKNINPD 287
           +M  +   PD
Sbjct: 637 EMIHRGFAPD 646



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 73/134 (54%)

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L + G+   A+E +  +   +   +  T N ++H +C   +++ A+ ++ EM  + V PD
Sbjct: 132 LSRAGWPHLAQEAYRLVLSSDSEVNAYTLNIMVHSYCKTLEFDGADTVISEMEKRCVFPD 191

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VVT NV++D   + G +D A  L++ M  RG+ P   T+++++ G C   R + AKE+F 
Sbjct: 192 VVTHNVLIDARFRAGDVDAAIALVDSMANRGLKPGIVTYNSVLKGLCKHRRFDKAKEVFR 251

Query: 383 SMESMGCKHTVFSY 396
           +M+       V S+
Sbjct: 252 TMDQCSVAPDVRSF 265


>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial [Vitis vinifera]
 gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
          Length = 765

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 104/319 (32%), Positives = 162/319 (50%), Gaps = 39/319 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLN---STGLF--PDLYTYNILINCFCKMGRVS 159
           P + +F +L   L K +  D  L +F+++N   S G    PD+ TYN LI+  CK+GR  
Sbjct: 338 PNVVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQE 397

Query: 160 HGFVVLGRILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            G  ++ R +RS   C  P+ V +  LI G C  S I  A  LF ++   G  PNV+T +
Sbjct: 398 EGLGLVER-MRSQPRCM-PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLN 455

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------------------------- 248
           TL++G+C+ G    A+  F EM     K   V                            
Sbjct: 456 TLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEA 515

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C P+ + Y T+I GL + G +D+A  +  +MK+   +PD+V++N LI+GFC  N  +EA
Sbjct: 516 GCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEA 575

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L EM + G++PD VT+N ++    K G    A RL++ M+  G+ P   T+  L+  
Sbjct: 576 YEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTVVTYGALIHA 635

Query: 368 FCLTGRVNHAKELFVSMES 386
           +CL G ++ A ++F  M S
Sbjct: 636 YCLNGNLDEAMKIFRDMSS 654



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 12/295 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S N L   L + + +  + +L   +    + P++ T+ ILIN  CK  RV     V  +
Sbjct: 306 ASCNALLTALGRAREFKRMNTLLAEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEK 365

Query: 168 ILRS-----CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVITYSTLING 221
           +           PD + + +LI GLC   R  E   L  ++++   C PN +TY+ LI+G
Sbjct: 366 MNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDG 425

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+      A  LF++M     K GV   PN VT  T++DG+CK G ++ A E F +M+ 
Sbjct: 426 YCKASMIEAARELFDQM----NKDGV--PPNVVTLNTLVDGMCKHGRINGAVEFFNEMQG 479

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K +  + VTY +LI  FC  N+  +A  L  EM++ G  PD + +  ++  L + GK+D 
Sbjct: 480 KGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDR 539

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           AS +L  M   G +P+  +F+ L++GFC   +++ A E+   ME+ G K    +Y
Sbjct: 540 ASFVLSKMKEAGFSPDIVSFNVLINGFCRKNKLDEAYEMLKEMENAGIKPDGVTY 594



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 148/298 (49%), Gaps = 8/298 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M N    PP + + N L   + K    +  +  F  +   GL  +  TY  LI  F
Sbjct: 438 LFDQM-NKDGVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C +  +     +   +L +  +PDA+ + +LI GL    ++  A+ + +K+K  G  P++
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKEAGFSPDI 556

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           ++++ LING CR      A  + +EM N         KP+ VTY T+I    K G    A
Sbjct: 557 VSFNVLINGFCRKNKLDEAYEMLKEMENAG------IKPDGVTYNTLISHFSKTGDFSTA 610

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMD 331
             L  +M  + + P VVTY +LIH +C   + +EA  +  +M     V P+ V +N++++
Sbjct: 611 HRLMKKMVKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILIN 670

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            LC+  ++D A  L++ M ++GV PNT+TF+ +  G      ++ A EL   M    C
Sbjct: 671 SLCRKNQVDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHAC 728



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/317 (29%), Positives = 155/317 (48%), Gaps = 9/317 (2%)

Query: 88  NEAFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHY------DTVLSLFKRLNSTGLFP 140
           ++A  + D ML  +   PP   + +++F  L+K          + ++ L  +     +FP
Sbjct: 209 DDALHLLDEMLQPKAEFPPNSNTGHIVFSALSKRDKVGRAVDEEEIVGLVSKFAEHEVFP 268

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           +      LI+  C+ GR    + VL  +++     +A +  +L+  L           L 
Sbjct: 269 NSIWLTQLISRLCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLL 328

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++K    +PNV+T+  LIN LC+      AL +FE+M NG    G + +P+ +TY T+I
Sbjct: 329 AEMKEMDIQPNVVTFGILINHLCKFRRVDEALEVFEKM-NGGESNGFLVEPDVITYNTLI 387

Query: 261 DGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           DGLCK G  ++   L  +M+ +    P+ VTYN LI G+C A+    A  L  +M   GV
Sbjct: 388 DGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGV 447

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT N ++D +CK+G+++ A      M  +G+  N  T++ L+  FC    +  A E
Sbjct: 448 PPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAFCNVNNIEKAME 507

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   GC      Y
Sbjct: 508 LFDEMLEAGCSPDAIVY 524



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 69/250 (27%), Positives = 120/250 (48%), Gaps = 6/250 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD ML    SP  +  + L+ G L++    D    +  ++   G  PD+ ++N+L
Sbjct: 504 KAMELFDEMLEAGCSPDAIVYYTLISG-LSQAGKLDRASFVLSKMKEAGFSPDIVSFNVL 562

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN FC+  ++   + +L  +  +   PD V + +LI           A  L  K+   G 
Sbjct: 563 INGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMVKEGL 622

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V+TY  LI+  C  G+   A+ +F +M++ +        PNTV Y  +I+ LC++  
Sbjct: 623 VPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSK-----VPPNTVIYNILINSLCRKNQ 677

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  L   MK K + P+  T+N++  G    N  ++A  L+  M +    PD +T  +
Sbjct: 678 VDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEI 737

Query: 329 IMDELCKNGK 338
           + + L   G+
Sbjct: 738 LTEWLSAVGE 747



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 157/390 (40%), Gaps = 84/390 (21%)

Query: 89  EAFCIFDYMLNMRP-SPPPLTSFNL--LFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYT 144
           +A   F+++    P    PL SF L  +F   ++  + ++ +L LFK   S  +   +  
Sbjct: 102 KALKFFNWVQANSPCQDSPLLSFTLEAVFEHASREPNSHNKLLDLFKTSKSHKIPLSVNA 161

Query: 145 YNILINCFCKMGRVSHGFVVL-----------------------GRI------LRSCFTP 175
             +LI CF +   V   F+V                        GR+      L     P
Sbjct: 162 ATLLIRCFGRAQMVDESFLVYNELCPSRRLTHIRNILIDVLFRKGRVDDALHLLDEMLQP 221

Query: 176 DA----------VAFTSLIK----GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            A          + F++L K    G   +    E   L +K       PN I  + LI+ 
Sbjct: 222 KAEFPPNSNTGHIVFSALSKRDKVGRAVDEE--EIVGLVSKFAEHEVFPNSIWLTQLISR 279

Query: 222 LCRTGHTIVALNLFE---------EMANGNGKFGVV--------------------CKPN 252
           LCR+G T  A ++           E A+ N     +                     +PN
Sbjct: 280 LCRSGRTDRAWDVLHGLMKLGGVMEAASCNALLTALGRAREFKRMNTLLAEMKEMDIQPN 339

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN-----PDVVTYNSLIHGFCYANDWNEA 307
            VT+  +I+ LCK   VD+A E+F +M     N     PDV+TYN+LI G C      E 
Sbjct: 340 VVTFGILINHLCKFRRVDEALEVFEKMNGGESNGFLVEPDVITYNTLIDGLCKVGRQEEG 399

Query: 308 NCLLIEMMDQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
             L+  M  Q    P+ VT+N ++D  CK   ++ A  L + M   GV PN  T +TL+D
Sbjct: 400 LGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVD 459

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  GR+N A E F  M+  G K    +Y
Sbjct: 460 GMCKHGRINGAVEFFNEMQGKGLKGNAVTY 489



 Score = 45.4 bits (106), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IF  M +    PP    +N+L   L +    D  LSL   +   G+ P+  T+N 
Sbjct: 643 DEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVDLALSLMDDMKVKGVKPNTNTFNA 702

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +     +   +S  F ++ R+      PD +    L + L A   + E A    KLK+F
Sbjct: 703 MFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEILTEWLSA---VGETA----KLKSF 754


>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
          Length = 332

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 10/222 (4%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD V FT+L+ GLC E R+++A AL  ++   G +P    Y T+INGLC+ G T  ALNL
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             +M   +       K + V Y  IID LCK+G    A+ LF +M DK I PDV+TY+ +
Sbjct: 64  LSKMEETH------IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I  FC +  W +A  LL +M+++ + PDVVTF+ +++ L K GK+ EA  +   M+ RG+
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P T T+++++DGFC   R+N AK +  SM S  C   V ++
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTF 219



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 144/262 (54%), Gaps = 10/262 (3%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
            TG  PD+ T+  L+N  C  GRV     ++ R++     P    + ++I GLC      
Sbjct: 3   ETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTE 58

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
            A  L +K++    K +V+ Y+ +I+ LC+ GH I A NLF EM +  G F     P+ +
Sbjct: 59  SALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHD-KGIF-----PDVI 112

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY+ +ID  C+ G    A++L   M ++ INPDVVT+++LI+        +EA  +  +M
Sbjct: 113 TYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDM 172

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + +G+ P  +T+N ++D  CK  ++++A R+L+ M  +  +P+  TFSTL++G+C   RV
Sbjct: 173 LRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRV 232

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
           ++  E+F  M   G      +Y
Sbjct: 233 DNGMEIFCEMHRRGIVANTVTY 254



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 143/284 (50%), Gaps = 10/284 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L         L+L  R+   G  P    Y  +IN  CKMG       +
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  +      V + ++I  LC +   + A  LFT++   G  P+VITYS +I+  CR
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR 123

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    A  L  +M            P+ VT++ +I+ L KEG V +A+E++  M  + I
Sbjct: 124 SGRWTDAEQLLRDMIERQ------INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  +TYNS+I GFC  +  N+A  +L  M  +   PDVVTF+ +++  CK  ++D    
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGME 237

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   M  RG+  NT T++TL+ GFC  G ++ A++L   M S G
Sbjct: 238 IFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG 281



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K  H+    +LF  ++  G+FPD+ TY+ +I+ FC+ GR +    +L  ++
Sbjct: 79  YNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMI 138

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD V F++LI  L  E ++ EA  ++  +   G  P  ITY+++I+G C+     
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLN 198

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + + MA+ +      C P+ VT++T+I+G CK   VD   E+F +M  + I  + V
Sbjct: 199 DAKRMLDSMASKS------CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 252

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           TY +LIHGFC   D + A  LL  M+  GV P+ +TF  ++  LC   ++ +A  +LE
Sbjct: 253 TYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILE 310



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M+     P     +  +   L K    ++ L+L  ++  T +   +  YN +
Sbjct: 28  QALALVDRMVEEGHQP-----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAI 82

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G   H   +   +      PD + ++ +I   C   R  +A  L   +     
Sbjct: 83  IDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQI 142

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+T+S LIN L + G    A  ++ +M    G F     P T+TY ++IDG CK+  
Sbjct: 143 NPDVVTFSALINALVKEGKVSEAEEIYGDMLR-RGIF-----PTTITYNSMIDGFCKQDR 196

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ AK +   M  K+ +PDVVT+++LI+G+C A   +    +  EM  +G+  + VT+  
Sbjct: 197 LNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 256

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++   C+ G +D A  LL +MI  GV PN  TF +++   C
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLC 297



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/220 (28%), Positives = 113/220 (51%), Gaps = 6/220 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     ++  +     L + +    + PD+ T++ LIN   K G+VS    +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +LR    P  + + S+I G C + R+ +A  +   + +  C P+V+T+STLING C+
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCK 228

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  + +F EM     + G+V   NTVTYTT+I G C+ G +D A++L   M    +
Sbjct: 229 AKRVDNGMEIFCEMH----RRGIV--ANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGV 282

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
            P+ +T+ S++   C   +  +A  +L ++    V P +V
Sbjct: 283 APNYITFQSMLASLCSKKELRKAFAILEDLQKSEVCPRIV 322



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 1/151 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I+  ML  R   P   ++N +     K    +    +   + S    PD+ T++ 
Sbjct: 163 SEAEEIYGDMLR-RGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFST 221

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  RV +G  +   + R     + V +T+LI G C    +  A  L   + + G
Sbjct: 222 LINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG 281

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
             PN IT+ +++  LC       A  + E++
Sbjct: 282 VAPNYITFQSMLASLCSKKELRKAFAILEDL 312



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 31/137 (22%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP----------------- 321
           M +    PDVVT+ +L++G C      +A  L+  M+++G QP                 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60

Query: 322 --------------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                          VV +N I+D LCK+G    A  L   M  +G+ P+  T+S ++D 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 368 FCLTGRVNHAKELFVSM 384
           FC +GR   A++L   M
Sbjct: 121 FCRSGRWTDAEQLLRDM 137



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/126 (23%), Positives = 62/126 (49%), Gaps = 1/126 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  + D M + +   P + +F+ L     K K  D  + +F  ++  G+  +  TY  
Sbjct: 198 NDAKRMLDSMAS-KSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 256

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FC++G +     +L  ++ S   P+ + F S++  LC++  + +A A+   L+   
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILEDLQKSE 316

Query: 208 CKPNVI 213
             P ++
Sbjct: 317 VCPRIV 322



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M++ G +PDVVTF  +M+ LC  G++ +A  L++ M+  G  P    + T+++G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A  L   ME    K  V  Y
Sbjct: 57  TESALNLLSKMEETHIKAHVVIY 79


>gi|42562903|ref|NP_176512.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|114050643|gb|ABI49471.1| At1g63230 [Arabidopsis thaliana]
 gi|332195952|gb|AEE34073.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 323

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 91/222 (40%), Positives = 134/222 (60%), Gaps = 10/222 (4%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD V FT+L+ GLC E R+++A AL  ++   G +P    Y T+INGLC+ G T  ALNL
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             +M   +       K + V Y  IID LCK+G    A+ LF +M DK I PDV+TY+ +
Sbjct: 64  LSKMEETH------IKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGM 117

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I  FC +  W +A  LL +M+++ + PDVVTF+ +++ L K GK+ EA  +   M+ RG+
Sbjct: 118 IDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P T T+++++DGFC   R+N AK +  SM S  C   V ++
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTF 219



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/262 (32%), Positives = 144/262 (54%), Gaps = 10/262 (3%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
            TG  PD+ T+  L+N  C  GRV     ++ R++     P    + ++I GLC      
Sbjct: 3   ETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTE 58

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
            A  L +K++    K +V+ Y+ +I+ LC+ GH I A NLF EM +  G F     P+ +
Sbjct: 59  SALNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHD-KGIF-----PDVI 112

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY+ +ID  C+ G    A++L   M ++ INPDVVT+++LI+        +EA  +  +M
Sbjct: 113 TYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDM 172

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + +G+ P  +T+N ++D  CK  ++++A R+L+ M  +  +P+  TFSTL++G+C   RV
Sbjct: 173 LRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRV 232

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
           ++  E+F  M   G      +Y
Sbjct: 233 DNGMEIFCEMHRRGIVANTVTY 254



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 143/284 (50%), Gaps = 10/284 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L         L+L  R+   G  P    Y  +IN  CKMG       +
Sbjct: 8   PDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGDTESALNL 63

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  +      V + ++I  LC +   + A  LFT++   G  P+VITYS +I+  CR
Sbjct: 64  LSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCR 123

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    A  L  +M            P+ VT++ +I+ L KEG V +A+E++  M  + I
Sbjct: 124 SGRWTDAEQLLRDMIERQ------INPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGI 177

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  +TYNS+I GFC  +  N+A  +L  M  +   PDVVTF+ +++  CK  ++D    
Sbjct: 178 FPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGME 237

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   M  RG+  NT T++TL+ GFC  G ++ A++L   M S G
Sbjct: 238 IFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG 281



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 6/238 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K  H+    +LF  ++  G+FPD+ TY+ +I+ FC+ GR +    +L  ++
Sbjct: 79  YNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMI 138

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD V F++LI  L  E ++ EA  ++  +   G  P  ITY+++I+G C+     
Sbjct: 139 ERQINPDVVTFSALINALVKEGKVSEAEEIYGDMLRRGIFPTTITYNSMIDGFCKQDRLN 198

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + + MA+ +      C P+ VT++T+I+G CK   VD   E+F +M  + I  + V
Sbjct: 199 DAKRMLDSMASKS------CSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTV 252

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           TY +LIHGFC   D + A  LL  M+  GV P+ +TF  ++  LC   ++ +A  +LE
Sbjct: 253 TYTTLIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLCSKKELRKAFAILE 310



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 136/281 (48%), Gaps = 11/281 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M+     P     +  +   L K    ++ L+L  ++  T +   +  YN +
Sbjct: 28  QALALVDRMVEEGHQP-----YGTIINGLCKMGDTESALNLLSKMEETHIKAHVVIYNAI 82

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G   H   +   +      PD + ++ +I   C   R  +A  L   +     
Sbjct: 83  IDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQI 142

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+T+S LIN L + G    A  ++ +M    G F     P T+TY ++IDG CK+  
Sbjct: 143 NPDVVTFSALINALVKEGKVSEAEEIYGDMLR-RGIF-----PTTITYNSMIDGFCKQDR 196

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ AK +   M  K+ +PDVVT+++LI+G+C A   +    +  EM  +G+  + VT+  
Sbjct: 197 LNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTT 256

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++   C+ G +D A  LL +MI  GV PN  TF +++   C
Sbjct: 257 LIHGFCQVGDLDAAQDLLNVMISSGVAPNYITFQSMLASLC 297



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/210 (28%), Positives = 109/210 (51%), Gaps = 6/210 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     ++  +     L + +    + PD+ T++ LIN   K G+VS    +
Sbjct: 109 PDVITYSGMIDSFCRSGRWTDAEQLLRDMIERQINPDVVTFSALINALVKEGKVSEAEEI 168

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +LR    P  + + S+I G C + R+ +A  +   + +  C P+V+T+STLING C+
Sbjct: 169 YGDMLRRGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCK 228

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  + +F EM     + G+V   NTVTYTT+I G C+ G +D A++L   M    +
Sbjct: 229 AKRVDNGMEIFCEMH----RRGIV--ANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSGV 282

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            P+ +T+ S++   C   +  +A  +L ++
Sbjct: 283 APNYITFQSMLASLCSKKELRKAFAILEDL 312



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 1/156 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I+  ML  R   P   ++N +     K    +    +   + S    PD+ T++ 
Sbjct: 163 SEAEEIYGDMLR-RGIFPTTITYNSMIDGFCKQDRLNDAKRMLDSMASKSCSPDVVTFST 221

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK  RV +G  +   + R     + V +T+LI G C    +  A  L   + + G
Sbjct: 222 LINGYCKAKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAAQDLLNVMISSG 281

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
             PN IT+ +++  LC       A  + E++    G
Sbjct: 282 VAPNYITFQSMLASLCSKKELRKAFAILEDLQKSEG 317



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/137 (28%), Positives = 61/137 (44%), Gaps = 31/137 (22%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP----------------- 321
           M +    PDVVT+ +L++G C      +A  L+  M+++G QP                 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQPYGTIINGLCKMGDTESA 60

Query: 322 --------------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                          VV +N I+D LCK+G    A  L   M  +G+ P+  T+S ++D 
Sbjct: 61  LNLLSKMEETHIKAHVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDS 120

Query: 368 FCLTGRVNHAKELFVSM 384
           FC +GR   A++L   M
Sbjct: 121 FCRSGRWTDAEQLLRDM 137



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M++ G +PDVVTF  +M+ LC  G++ +A  L++ M+  G  P    + T+++G C  G 
Sbjct: 1   MVETGCRPDVVTFTTLMNGLCCEGRVLQALALVDRMVEEGHQP----YGTIINGLCKMGD 56

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A  L   ME    K  V  Y
Sbjct: 57  TESALNLLSKMEETHIKAHVVIY 79


>gi|302758228|ref|XP_002962537.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
 gi|300169398|gb|EFJ36000.1| hypothetical protein SELMODRAFT_70281 [Selaginella moellendorffii]
          Length = 439

 Score =  180 bits (457), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 156/296 (52%), Gaps = 12/296 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + + N+L     + +  D  L LF  +     L P+  TY  +I C+CKM R+     
Sbjct: 68  PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQ 127

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGL 222
           +L     SC + D +A TS+ +G C   R+ EA  L   + +    KP+++ ++ +I+G 
Sbjct: 128 LLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGF 185

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF--LQMK 280
           C+ G    A  + E + +        C PN VTYTT+IDG CK G + +A +LF  L  +
Sbjct: 186 CKAGRVREAYEMLETLVSMG------CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR 239

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D +  P+VVT+N+LI G C A+    A  L+ +M  + ++ D  T+  +MD LCK G+  
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E SR+ E M+  G NP+  T++TL+   C  G +  A+++  SM + G    V +Y
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTY 355



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 134/248 (54%), Gaps = 11/248 (4%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+ +T+++LI   CK GR+        ++L     P+      L+  LC   ++ +A A+
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F   +   C P+VIT + LING C       AL LF EM      F +V  P   TYT I
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN---FALV--PEATTYTAI 112

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QG 318
           I   CK   +D+A++L  +      + DV+   S+  GFC A   +EA  LL++M++ + 
Sbjct: 113 IKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKS 170

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +PD+V +NVI+   CK G++ EA  +LE ++  G  PN  T++TL+DGFC +G ++ A 
Sbjct: 171 AKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEAL 230

Query: 379 ELFVSMES 386
           +LF  + S
Sbjct: 231 QLFKVLSS 238



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 25/347 (7%)

Query: 43  PSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITP-----------NEAF 91
           P   T TA +K   ++   D+A   Q L+E   S    D+ AIT            +EA+
Sbjct: 104 PEATTYTAIIKCYCKMDRLDQA--RQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAY 159

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
            +   M+  + + P + ++N++     K         + + L S G  P+  TY  LI+ 
Sbjct: 160 QLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDG 219

Query: 152 FCKMGRVSHGFVVLGRILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           FCK G +S     L ++L S      P+ V F +LI GLC   R+  A  L  ++KA   
Sbjct: 220 FCKSGNLSEALQ-LFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDL 278

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + +  TY+TL++GLC+ G T     +FEEM          C P+ VTYTT++   CK G 
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG------CNPSVVTYTTLVHAHCKAGS 332

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+++   M  K I PDV TY  L+ G         A     +++ +   P  V ++ 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           ++   CK   +DEA +    M+ R + P+ +T   L++  C  GR +
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 67/213 (31%)

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQM---------KDKNI----------------- 284
           PN  T++ +I GLCK G + +A E + QM         +D N+                 
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGKMDQAMAI 60

Query: 285 ------NPDVVTYNSLIHGFCYANDWNEANCLLIEM------------------------ 314
                 +P V+T N LI+GFC     ++A  L  EM                        
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 315 -MDQGVQ---------PDVVTFNVIMDELCKNGKMDEASRLLELMI-LRGVNPNTSTFST 363
            +DQ  Q          DV+    +    CK  ++DEA +LL  M+  +   P+   ++ 
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ GFC  GRV  A E+  ++ SMGC     +Y
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTY 213


>gi|302758668|ref|XP_002962757.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
 gi|300169618|gb|EFJ36220.1| hypothetical protein SELMODRAFT_70280 [Selaginella moellendorffii]
          Length = 439

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/296 (32%), Positives = 156/296 (52%), Gaps = 12/296 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + + N+L     + +  D  L LF  +     L P+  TY  +I C+CKM R+     
Sbjct: 68  PSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMDRLDQARQ 127

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGL 222
           +L     SC + D +A TS+ +G C   R+ EA  L   + +    KP+++ ++ +I+G 
Sbjct: 128 LLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNVIIHGF 185

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF--LQMK 280
           C+ G    A  + E + +        C PN VTYTT+IDG CK G + +A +LF  L  +
Sbjct: 186 CKAGRVREAYEMLETLVSMG------CVPNAVTYTTLIDGFCKSGNLSEALQLFKVLSSR 239

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D +  P+VVT+N+LI G C A+    A  L+ +M  + ++ D  T+  +MD LCK G+  
Sbjct: 240 DHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDLRADTFTYTTLMDGLCKQGRTS 299

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E SR+ E M+  G NP+  T++TL+   C  G +  A+++  SM + G    V +Y
Sbjct: 300 EVSRVFEEMLREGCNPSVVTYTTLVHAHCKAGSLQDAQQVIRSMVAKGIPPDVTTY 355



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/248 (34%), Positives = 133/248 (53%), Gaps = 11/248 (4%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+ +T+++LI   CK GR+        ++L     P+      L+  LC    + +A A+
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F   +   C P+VIT + LING C       AL LF EM      F +V  P   TYT I
Sbjct: 61  F---RGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKN---FALV--PEATTYTAI 112

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD-QG 318
           I   CK   +D+A++L  +      + DV+   S+  GFC A   +EA  LL++M++ + 
Sbjct: 113 IKCYCKMDRLDQARQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKS 170

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +PD+V +NVI+   CK G++ EA  +LE ++  G  PN  T++TL+DGFC +G ++ A 
Sbjct: 171 AKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDGFCKSGNLSEAL 230

Query: 379 ELFVSMES 386
           +LF  + S
Sbjct: 231 QLFKVLSS 238



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 161/347 (46%), Gaps = 25/347 (7%)

Query: 43  PSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITP-----------NEAF 91
           P   T TA +K   ++   D+A   Q L+E   S    D+ AIT            +EA+
Sbjct: 104 PEATTYTAIIKCYCKMDRLDQA--RQLLEE--SSCCSSDVIAITSVARGFCKAQRVDEAY 159

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
            +   M+  + + P + ++N++     K         + + L S G  P+  TY  LI+ 
Sbjct: 160 QLLLDMVEKKSAKPDIVAWNVIIHGFCKAGRVREAYEMLETLVSMGCVPNAVTYTTLIDG 219

Query: 152 FCKMGRVSHGFVVLGRILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           FCK G +S     L ++L S      P+ V F +LI GLC   R+  A  L  ++KA   
Sbjct: 220 FCKSGNLSEALQ-LFKVLSSRDHHAEPNVVTFNALISGLCKADRLEHAFELVKQMKARDL 278

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + +  TY+TL++GLC+ G T     +FEEM          C P+ VTYTT++   CK G 
Sbjct: 279 RADTFTYTTLMDGLCKQGRTSEVSRVFEEMLREG------CNPSVVTYTTLVHAHCKAGS 332

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+++   M  K I PDV TY  L+ G         A     +++ +   P  V ++ 
Sbjct: 333 LQDAQQVIRSMVAKGIPPDVTTYTVLLEGLFENGKVRTATEFFEKILRERCPPCAVVYSA 392

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           ++   CK   +DEA +    M+ R + P+ +T   L++  C  GR +
Sbjct: 393 LVRGCCKAALVDEAVKYYVEMLDRRLAPDPATCKLLVEMLCKRGRTD 439



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 85/213 (39%), Gaps = 67/213 (31%)

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQM---------KDKNI----------------- 284
           PN  T++ +I GLCK G + +A E + QM         +D N+                 
Sbjct: 1   PNRFTFSVLIAGLCKAGRLGEAVECYNQMLERHCVPNLRDINLLLASLCQAGTMDQAMAI 60

Query: 285 ------NPDVVTYNSLIHGFCYANDWNEANCLLIEM------------------------ 314
                 +P V+T N LI+GFC     ++A  L  EM                        
Sbjct: 61  FRGIQCSPSVITLNILINGFCELQLLDKALELFHEMEKNFALVPEATTYTAIIKCYCKMD 120

Query: 315 -MDQGVQ---------PDVVTFNVIMDELCKNGKMDEASRLLELMI-LRGVNPNTSTFST 363
            +DQ  Q          DV+    +    CK  ++DEA +LL  M+  +   P+   ++ 
Sbjct: 121 RLDQARQLLEESSCCSSDVIAITSVARGFCKAQRVDEAYQLLLDMVEKKSAKPDIVAWNV 180

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ GFC  GRV  A E+  ++ SMGC     +Y
Sbjct: 181 IIHGFCKAGRVREAYEMLETLVSMGCVPNAVTY 213


>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
 gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
          Length = 485

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M + R     + SFN +   + +    D   +L +R++  G+ PD+YTY  LI   
Sbjct: 138 VFDEMQS-RGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGL 196

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C++GR+     V  ++      P+AV FT LI   C +        L  +++  G +P+ 
Sbjct: 197 CRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDA 256

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ ++NGLCR      A  +  EM +         +P+TVTYTT+IDG CKE  +D A
Sbjct: 257 VTYNAIVNGLCRARDLKSASGIVVEMRSAG------LRPDTVTYTTLIDGYCKEEELDMA 310

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            E+   M  + +  D VTY +LI G   A    +A  +L EMM+ G++PD  T+ +++D 
Sbjct: 311 MEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 370

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C+ G +    RLL+ M  +G  P   T++ +M+GFC  G++ +A  L  +M ++G    
Sbjct: 371 FCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPD 430

Query: 393 VFSY 396
             +Y
Sbjct: 431 DITY 434



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 6/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           + + +L   GL P+   +N+L+    ++G ++    V   +         V+F ++I G+
Sbjct: 102 AFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGM 161

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    +  A  L  ++   G  P+V TY  LI GLCR G    A  +FE+M  G G    
Sbjct: 162 CRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMC-GRG---- 216

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             KPN V +T +ID  CK+G  +   EL  +M+++ + PD VTYN++++G C A D   A
Sbjct: 217 -MKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 275

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           + +++EM   G++PD VT+  ++D  CK  ++D A  + + M+  GV  +  T++ L+ G
Sbjct: 276 SGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISG 335

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               GR   A+ +   M   G +    +Y
Sbjct: 336 LSKAGRSADAERVLGEMMEAGLEPDNTTY 364



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 102/202 (50%), Gaps = 6/202 (2%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA A + +L   G  P    ++ L+  L R G    A N+F+EM +     GV  +   V
Sbjct: 99  EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQS----RGV--RRTVV 152

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           ++ T+I G+C+ G +D A+ L  +M +  + PDV TY +LI G C      +A  +  +M
Sbjct: 153 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 212

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +G++P+ V F +++D  CK G  +    L   M  RGV P+  T++ +++G C    +
Sbjct: 213 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 272

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  + V M S G +    +Y
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTY 294



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            +EG +  A  L L    + I  +  +   L+  F  A    EA    ++++D G+ P+ 
Sbjct: 60  AEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAP---EACAFYLQLLDAGLPPEA 116

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             FNV+M +L + G++  A  + + M  RGV     +F+T++ G C  G ++ A+ L   
Sbjct: 117 KLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRR 176

Query: 384 MESMGCKHTVFSY 396
           M   G    V++Y
Sbjct: 177 MSEAGVTPDVYTY 189


>gi|242092012|ref|XP_002436496.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
 gi|241914719|gb|EER87863.1| hypothetical protein SORBIDRAFT_10g003720 [Sorghum bicolor]
          Length = 698

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     +    D    L   +   GL P+L T+N ++N  CK GR+     V
Sbjct: 190 PNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFNSVVNGICKAGRMEDARKV 249

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    PD V++ +L+ G C      EA ++F ++   G  P+V+T+++LI+ +C+
Sbjct: 250 FDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRKGIMPDVVTFTSLIHVMCK 309

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+ L  EM     +       N +T+T +IDG CK+GF+D A     +M+   I
Sbjct: 310 AGNLERAVGLVREMRERGLQM------NEITFTALIDGFCKKGFLDDALLAVREMRQCRI 363

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P VV YN+LI+G+C     +EA  L+ EM  +GV+PDVVT++ I+   CKNG    A +
Sbjct: 364 QPSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQ 423

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+  GV P+  T+S+L+   C   R+  A  LF +M S+G +    +Y
Sbjct: 424 LNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTY 475



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN +   + K    +    +F  +   GL PD  +YN L+  +CK+G       V
Sbjct: 225 PNLVTFNSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSV 284

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R    PD V FTSLI  +C    +  A  L  +++  G + N IT++ LI+G C+
Sbjct: 285 FAEMTRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTALIDGFCK 344

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL    EM           +P+ V Y  +I+G C  G +D+A+EL  +M+ K +
Sbjct: 345 KGFLDDALLAVREMRQCR------IQPSVVCYNALINGYCMVGRMDEARELVREMEAKGV 398

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY++++  +C   D + A  L  +M++ GV PD +T++ ++  LC+  ++ +A  
Sbjct: 399 KPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHV 458

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + MI  G+ P+  T+++L+DG C  G V  A  L   M   G    V +Y
Sbjct: 459 LFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTY 510



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 159/335 (47%), Gaps = 47/335 (14%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M   +   P + +F  L   + K  + +  + L + +   GL  +  T+  
Sbjct: 279 HEALSVFAEM-TRKGIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITFTA 337

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+ FCK G +    + + R +R C   P  V + +LI G C   R+ EA  L  +++A 
Sbjct: 338 LIDGFCKKGFLDDALLAV-REMRQCRIQPSVVCYNALINGYCMVGRMDEARELVREMEAK 396

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANG--------NGKFGVVC-------- 249
           G KP+V+TYST+++  C+ G T  A  L ++M  NG        +    V+C        
Sbjct: 397 GVKPDVVTYSTILSAYCKNGDTHSAFQLNQQMLENGVLPDAITYSSLIRVLCEEKRLGDA 456

Query: 250 ------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                       +P+ VTYT++IDG CKEG V++A  L  +M    + PDVVTY+ LI+G
Sbjct: 457 HVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSLHDEMVKAGVLPDVVTYSVLING 516

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD-----EL----------CKNGKMDEA 342
              +    EA  LL ++  +   P  + ++ +M      EL          C  G M+EA
Sbjct: 517 LSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEA 576

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++ + ++ R  N + S +S L+ G C  G V  A
Sbjct: 577 DKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKA 611



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 149/295 (50%), Gaps = 21/295 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L          D    L + + + G+ PD+ TY+ +++ +CK G     F +
Sbjct: 365 PSVVCYNALINGYCMVGRMDEARELVREMEAKGVKPDVVTYSTILSAYCKNGDTHSAFQL 424

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L +   PDA+ ++SLI+ LC E R+ +A  LF  + + G +P+ +TY++LI+G C+
Sbjct: 425 NQQMLENGVLPDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCK 484

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L +EM     K GV+  P+ VTY+ +I+GL K     +A+ L  ++  +  
Sbjct: 485 EGNVERALSLHDEMV----KAGVL--PDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEP 538

Query: 285 NPDVVTYNSLIH---------------GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            P  + Y++L+                GFC     NEA+ +   ++D+    D   ++V+
Sbjct: 539 VPANIKYDALMRCCRNAELKSVLALLKGFCMKGLMNEADKVYQSILDRNWNLDGSVYSVL 598

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +   C+ G + +A    + M+  G  PN+++  +L+ G    G V  A ++   +
Sbjct: 599 IHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQVIQQL 653



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 118/224 (52%), Gaps = 7/224 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + P  +A+ +++  L +++ +  A   F  + + G  PNV TY+ L+  LC  GH   AL
Sbjct: 119 YAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEAL 177

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           ++  +M       G  C PN VTY T++   C+ G VD+A+ L   M++  + P++VT+N
Sbjct: 178 SVLRDMR------GAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTFN 231

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           S+++G C A    +A  +  EM+ +G+ PD V++N ++   CK G   EA  +   M  +
Sbjct: 232 SVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTRK 291

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+ P+  TF++L+   C  G +  A  L   M   G +    ++
Sbjct: 292 GIMPDVVTFTSLIHVMCKAGNLERAVGLVREMRERGLQMNEITF 335



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/190 (28%), Positives = 101/190 (53%), Gaps = 7/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+V+ Y+ ++  L        A   F+ M +     GV   PN  TY  ++  LC  
Sbjct: 118 GYAPSVLAYNAVLLAL-SDASLPSARRFFDSMLSD----GVA--PNVYTYNILVRALCGR 170

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A  +   M+    +P+ VTYN+L+  FC A + + A  L+  M + G++P++VTF
Sbjct: 171 GHRKEALSVLRDMRGAGCDPNAVTYNTLVAAFCRAGEVDRAERLVDMMREGGLKPNLVTF 230

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N +++ +CK G+M++A ++ + M+  G+ P+  +++TL+ G+C  G  + A  +F  M  
Sbjct: 231 NSVVNGICKAGRMEDARKVFDEMVKEGLAPDGVSYNTLVGGYCKVGCSHEALSVFAEMTR 290

Query: 387 MGCKHTVFSY 396
            G    V ++
Sbjct: 291 KGIMPDVVTF 300



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 105/246 (42%), Gaps = 26/246 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +++ L   L + K       LFK + S GL PD  TY  LI+  CK G V     +
Sbjct: 435 PDAITYSSLIRVLCEEKRLGDAHVLFKNMISLGLQPDEVTYTSLIDGHCKEGNVERALSL 494

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++++   PD V ++ LI GL   +R  EA  L  KL      P  I Y  L+   CR
Sbjct: 495 HDEMVKAGVLPDVVTYSVLINGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMR-CCR 553

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  L L +                         G C +G +++A +++  + D+N 
Sbjct: 554 NAELKSVLALLK-------------------------GFCMKGLMNEADKVYQSILDRNW 588

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N D   Y+ LIHG C   +  +A     +M+  G  P+  +   ++  L + G + EA +
Sbjct: 589 NLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISLIRGLFEKGMVVEADQ 648

Query: 345 LLELMI 350
           +++ ++
Sbjct: 649 VIQQLL 654



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 53/249 (21%), Positives = 90/249 (36%), Gaps = 59/249 (23%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  M+++   P  +T  +L+ G   K  + +  LSL   +   G+ PD+ TY++L
Sbjct: 455 DAHVLFKNMISLGLQPDEVTYTSLIDG-HCKEGNVERALSLHDEMVKAGVLPDVVTYSVL 513

Query: 149 INC--------------------------------------------------FCKMGRV 158
           IN                                                   FC  G +
Sbjct: 514 INGLSKSARTKEAQRLLFKLYHEEPVPANIKYDALMRCCRNAELKSVLALLKGFCMKGLM 573

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           +    V   IL   +  D   ++ LI G C E  +M+A +   ++   G  PN  +  +L
Sbjct: 574 NEADKVYQSILDRNWNLDGSVYSVLIHGHCREGNVMKALSFHKQMLQCGFAPNSTSTISL 633

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCK-PNTVTYTTIIDGLCKEGFVDKAKELFL 277
           I GL   G  + A  + +++ N        C   +      +ID   KEG VD   ++  
Sbjct: 634 IRGLFEKGMVVEADQVIQQLLN-------CCSLADAEASKALIDLNLKEGNVDAVLDVLH 686

Query: 278 QMKDKNINP 286
            M    + P
Sbjct: 687 GMARDGLLP 695


>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
 gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
          Length = 399

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 147/285 (51%), Gaps = 9/285 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L K    D    +   +  +G   +L TYN LIN     GR     +V
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLC 223
           +  +     TPD   + ++I G C    I  A     ++K   GC P+  TYS LINGLC
Sbjct: 147 MQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++ +   A  L +EM          C  + V + T++DG CK   +D+A+EL   M +  
Sbjct: 204 KSSNLRKADELLQEMIGRKD-----CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVTY+++I G C   D ++   LL +M+ +G +PDVVT+ V++  LCK GKM EA 
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           RL++ M+  G  PN  T+S + DG C   +++ A +L  S+   G
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 153/307 (49%), Gaps = 12/307 (3%)

Query: 94  FDYMLNMRPSP---PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
            D +  M   P   P  + +N     L K+      + + K +      PD+ T+N LI 
Sbjct: 38  MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIA 97

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             CK GR+     VL  + RS F  + V + +LI GL +  R  EA  +   ++     P
Sbjct: 98  GLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV---MQGMTTTP 154

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +  TY+ +I+G C++G    A    EEM    G     C P+T TY+ +I+GLCK   + 
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILINGLCKSSNLR 209

Query: 271 KAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           KA EL  +M   K+    VV +N+L+ G+C A D + A  LL  M++ G  PDVVT++ I
Sbjct: 210 KADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTI 269

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LC+ G +D+   LLE M+ RG  P+  T++ L+ G C  G++  A  L   M   GC
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 390 KHTVFSY 396
                +Y
Sbjct: 330 TPNAVTY 336



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +   M+  +     + +FN L     K +  D    L   +   G  PD+ TY+ +I+  
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G V  GF +L +++     PD V +T L+ GLC   +++EA  L  ++   GC PN 
Sbjct: 274 CRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNA 333

Query: 213 ITYSTLINGLCRTGHTIVALNLF 235
           +TYS + +GLC+     +A +L 
Sbjct: 334 VTYSLVFDGLCKIDKLDMANDLL 356



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/115 (26%), Positives = 60/115 (52%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +   L +    D   +L +++ S G  PD+ TY +L+   CK G++     +
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRL 320

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
           + R+L    TP+AV ++ +  GLC   ++  A  L T ++  G   +V+ + TL+
Sbjct: 321 VKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL 375



 Score = 42.0 bits (97), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ F + + M++ R   P + ++ +L   L K         L KR+   G  P+  TY++
Sbjct: 280 DKGFALLEKMVS-RGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSL 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           + +  CK+ ++     +L  I       D VAF +L+  L  + R+++ AA F K K
Sbjct: 339 VFDGLCKIDKLDMANDLLTSIRDKGRVTDVVAFETLL--LSVKKRLLDRAA-FQKWK 392


>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
 gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
          Length = 399

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 98/285 (34%), Positives = 147/285 (51%), Gaps = 9/285 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L K    D    +   +  +G   +L TYN LIN     GR     +V
Sbjct: 87  PDVVTFNTLIAGLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV 146

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLC 223
           +  +     TPD   + ++I G C    I  A     ++K   GC P+  TYS LINGLC
Sbjct: 147 MQGMTT---TPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILINGLC 203

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++ +   A  L +EM          C  + V + T++DG CK   +D+A+EL   M +  
Sbjct: 204 KSSNLRKADELLQEMIGRKD-----CCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHG 258

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVTY+++I G C   D ++   LL +M+ +G +PDVVT+ V++  LCK GKM EA 
Sbjct: 259 CAPDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEAC 318

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           RL++ M+  G  PN  T+S + DG C   +++ A +L  S+   G
Sbjct: 319 RLVKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKG 363



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 153/307 (49%), Gaps = 12/307 (3%)

Query: 94  FDYMLNMRPSP---PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
            D +  M   P   P  + +N     L K+      + + K +      PD+ T+N LI 
Sbjct: 38  MDLLREMEQQPGMAPTPSMYNFFVHALCKSGKVPEAMEVVKNMKDGACKPDVVTFNTLIA 97

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             CK GR+     VL  + RS F  + V + +LI GL +  R  EA  +   ++     P
Sbjct: 98  GLCKAGRLDEAQQVLDEMERSGFAANLVTYNTLINGLSSAGRSGEAVLV---MQGMTTTP 154

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +  TY+ +I+G C++G    A    EEM    G     C P+T TY+ +I+GLCK   + 
Sbjct: 155 DTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAG-----CSPDTFTYSILINGLCKSSNLR 209

Query: 271 KAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           KA EL  +M   K+    VV +N+L+ G+C A D + A  LL  M++ G  PDVVT++ I
Sbjct: 210 KADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTI 269

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LC+ G +D+   LLE M+ RG  P+  T++ L+ G C  G++  A  L   M   GC
Sbjct: 270 IDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGC 329

Query: 390 KHTVFSY 396
                +Y
Sbjct: 330 TPNAVTY 336



 Score = 85.9 bits (211), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 71/143 (49%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +   M+  +     + +FN L     K +  D    L   +   G  PD+ TY+ +I+  
Sbjct: 214 LLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGL 273

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G V  GF +L +++     PD V +T L+ GLC   +++EA  L  ++   GC PN 
Sbjct: 274 CRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNA 333

Query: 213 ITYSTLINGLCRTGHTIVALNLF 235
           +TYS + +GLC+     +A +L 
Sbjct: 334 VTYSLVFDGLCKIDKLDMANDLL 356



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/115 (25%), Positives = 59/115 (51%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +   L +    D   +L +++ S G  PD+ TY +L+   CK G++     +
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRL 320

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
           + R+L    TP+AV ++ +  GLC   ++  A  L T ++  G   +V+ +  L+
Sbjct: 321 VKRMLEDGCTPNAVTYSLVFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL 375



 Score = 41.6 bits (96), Expect = 0.64,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 4/117 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ F + + M++ R   P + ++ +L   L K         L KR+   G  P+  TY++
Sbjct: 280 DKGFALLEKMVS-RGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSL 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           + +  CK+ ++     +L  I       D VAF +L+  L  + R+++ AA F K K
Sbjct: 339 VFDGLCKIDKLDMANDLLTSIRDKGRITDVVAFEALL--LSVKKRLLDRAA-FQKWK 392


>gi|218184813|gb|EEC67240.1| hypothetical protein OsI_34171 [Oryza sativa Indica Group]
          Length = 458

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 162/303 (53%), Gaps = 8/303 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYTYNILINCFCK 154
           L +R     + SFN     +A+      V SLF R+   G   + PDL TY+ILI C C+
Sbjct: 49  LPLRGWGASIYSFNRTLTDVARDSPAAAV-SLFNRMARAGADEVTPDLCTYSILIGCCCR 107

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKAFGCKPNVI 213
            GR+  GF  LG +++  F  +A+ F  L+KGLCA+ R  +A  +   ++    C P+V 
Sbjct: 108 AGRLDLGFAALGNVIKKGFRVEAITFAPLLKGLCADKRTSDAMDIVLRRMTELSCMPDVF 167

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           + + L+ GLC    +  AL L   MA+  G       P+ V+YTT+I+G  KEG  DKA 
Sbjct: 168 SCTILLKGLCDENRSQEALELLHMMADDRGGGS---PPDVVSYTTVINGFFKEGDSDKAY 224

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
             + +M  + I+P+VVTY+S+I   C A   ++A  +L  M+  GV PD +T++ I+   
Sbjct: 225 STYHEMLGRRISPNVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGY 284

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C +G+  E    L  M   GV PN  T+ +LM+  C  GR   A+++F SM   G +  +
Sbjct: 285 CSSGQPKEDIGTLNKMRSDGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMTKRGLEPDI 344

Query: 394 FSY 396
            +Y
Sbjct: 345 ATY 347



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 126/252 (50%), Gaps = 6/252 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD+ +Y  +IN F K G     +     +L    +P+ V ++S+I  LC    + +A
Sbjct: 199 GSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTYSSIIAALCKAQAMDKA 258

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +   +   G  P+ +TYS++++G C +G     +    +M +         +PN VTY
Sbjct: 259 MEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRSDG------VEPNVVTY 312

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            ++++ LCK G   KA+++F  M  + + PD+ TY +L+ G+       E + LL  M+ 
Sbjct: 313 RSLMNYLCKNGRCTKARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVR 372

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G+QPD   FN+++    K  K+D+A  +   M   G+NPN   + T++D  C +G V+ 
Sbjct: 373 NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD 432

Query: 377 AKELFVSMESMG 388
           A   F  M   G
Sbjct: 433 AMLYFEQMIDEG 444



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 8/272 (2%)

Query: 88  NEAFCIFDYMLNMRP--SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
            EA  +   M + R   SPP + S+  +     K    D   S +  +    + P++ TY
Sbjct: 183 QEALELLHMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLGRRISPNVVTY 242

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           + +I   CK   +     VL  ++++   PD + ++S++ G C+  +  E      K+++
Sbjct: 243 SSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYSSILHGYCSSGQPKEDIGTLNKMRS 302

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G +PNV+TY +L+N LC+ G    A  +F+ M     K G+  +P+  TY T++ G   
Sbjct: 303 DGVEPNVVTYRSLMNYLCKNGRCTKARKIFDSMT----KRGL--EPDIATYRTLLQGYAT 356

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G + +   L   M    I PD   +N LI  +      ++A  +  +M   G+ P+VV 
Sbjct: 357 KGALVEMHALLDLMVRNGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVC 416

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +  ++D LCK+G +D+A    E MI  G+ PN
Sbjct: 417 YGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPN 448



 Score = 42.4 bits (98), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 45/106 (42%), Gaps = 1/106 (0%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+      P    FN+L    AK +  D  + +F ++   GL
Sbjct: 352 QGYATKGALVEMHALLDLMVR-NGIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGL 410

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
            P++  Y  +I+  CK G V    +   +++    TP+ +   S +
Sbjct: 411 NPNVVCYGTVIDVLCKSGSVDDAMLYFEQMIDEGLTPNIILSVSSV 456


>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g01110-like [Vitis vinifera]
          Length = 746

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 178/349 (51%), Gaps = 22/349 (6%)

Query: 52  LKESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSP---PPL 107
           L E L++ +  D A+    L E C++    D        A  IFD M    PS    P L
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMD--------AERIFDEM----PSQGVVPDL 394

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            SF+ L G L+K    D  L  F+ + + GL PD   Y ILI  FC+ G +S    V   
Sbjct: 395 VSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 454

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L      D V + +++ GLC E  + EA  LFT++   G  P+  T++TLING  + G+
Sbjct: 455 MLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 514

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ LFE M   N       KP+ VTY T+IDG CK   ++K  EL+  M  + I P+
Sbjct: 515 MNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 568

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            ++Y  LI+G+C     +EA  L  EM+++G +  ++T N I+   C+ G   +A   L 
Sbjct: 569 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 628

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+L+G+ P+  T++TL++GF     ++ A  L   ME+ G    V +Y
Sbjct: 629 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 677



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++   L K +  +   S    +   G+FPD+ TYN LIN +C+ G +   F ++  +
Sbjct: 256 TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 315

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P    + ++I GLC   + + A  +  ++   G  P+  TY+ L+   CR  + 
Sbjct: 316 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 375

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A  +F+EM +     GVV  P+ V+++ +I  L K G +D+A + F  MK+  + PD 
Sbjct: 376 MDAERIFDEMPSQ----GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN 429

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  LI GFC     +EA  +  EM++QG   DVVT+N I++ LCK   + EA  L   
Sbjct: 430 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTE 489

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL++G+   G +N A  LF  M     K  V +Y
Sbjct: 490 MTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTY 537



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +    +    L   ++  GL P ++TYN +IN  CK G+      V
Sbjct: 287 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 346

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L+   +PD   +  L+   C    +M+A  +F ++ + G  P+++++S LI  L +
Sbjct: 347 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 406

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL  F +M N          P+ V YT +I G C+ G + +A ++  +M ++  
Sbjct: 407 NGCLDQALKYFRDMKNAG------LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 460

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DVVTYN++++G C     +EA+ L  EM ++GV PD  TF  +++   K+G M++A  
Sbjct: 461 VLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVT 520

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           L E+MI R + P+  T++TL+DGFC    +    EL+  M S
Sbjct: 521 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMIS 562



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + D M + +   P + ++N +   L KT  Y     +   +   G+ PD  TYNIL
Sbjct: 307 EAFELMDSM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 365

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+   +     +   +      PD V+F++LI  L     + +A   F  +K  G 
Sbjct: 366 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 425

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ + Y+ LI G CR G    AL + +EM          C  + VTY TI++GLCKE  
Sbjct: 426 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG------CVLDVVTYNTILNGLCKEKM 479

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A ELF +M ++ + PD  T+ +LI+G+    + N+A  L   M+ + ++PDVVT+N 
Sbjct: 480 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 539

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK  +M++ + L   MI R + PN  ++  L++G+C  G V+ A  L+  M   G
Sbjct: 540 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 599

Query: 389 CKHTVFS 395
            + T+ +
Sbjct: 600 FEATIIT 606



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 7/291 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           PL  F+LL     + +        F+ L S GL   +   N L+    K+G V   + + 
Sbjct: 184 PLV-FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 242

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             ++RS    +      +I  LC   +I    +  + ++  G  P+V+TY+TLIN  CR 
Sbjct: 243 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 302

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  L + M+ G G      KP   TY  II+GLCK G   +AK +  +M    ++
Sbjct: 303 GLLEEAFELMDSMS-GKG-----LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 356

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  TYN L+   C  ++  +A  +  EM  QGV PD+V+F+ ++  L KNG +D+A + 
Sbjct: 357 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 416

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M   G+ P+   ++ L+ GFC  G ++ A ++   M   GC   V +Y
Sbjct: 417 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTY 467



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 30/298 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML  +     + ++N +   L K K       LF  +   G+FPD YT+  L
Sbjct: 447 EALKVRDEMLE-QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 505

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN + K G ++    +   +++    PD V + +LI G C  S + +   L+  + +   
Sbjct: 506 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 565

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            PN I+Y  LING C  G    A  L++EM                 G  + G   K   
Sbjct: 566 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 625

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY T+I+G  KE  +D+A  L  +M++  + PDV+TYN +++GF 
Sbjct: 626 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 685

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                 EA  ++++M+++GV PD  T+  +++       + EA R+ + M+ RG  P+
Sbjct: 686 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 743


>gi|449491568|ref|XP_004158939.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
           mitochondrial-like [Cucumis sativus]
          Length = 412

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 108/284 (38%), Positives = 154/284 (54%), Gaps = 28/284 (9%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           ++  GL PDL+T NIL NC C + RVS G   +  ILR  + PD V + +LIKGLC   R
Sbjct: 1   MHLAGLSPDLFTLNILANCLCNLNRVSEGLAAMTGILRRGYIPDIVTYNTLIKGLCRVHR 60

Query: 193 IM-----------------EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           I                  EA  +F ++KA G  PNVI+YS+L++G C  G    +  LF
Sbjct: 61  ISVATCIIIDGLCKVGHEDEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESKRLF 120

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            EM +     GV  +PN V +  +ID LCKEG V +AK+L      + I  D+VTYNSLI
Sbjct: 121 NEMVDQ----GV--QPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLI 174

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            GFC   D + A  L + M  +G + + +++ ++++  CK  K++EA  L   M   G  
Sbjct: 175 DGFCKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKR 234

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG-----CKHTVF 394
           PN  T+STL+ G   TG+V  A +LF  M++ G     C + +F
Sbjct: 235 PNVKTYSTLLTGLLQTGKVGDANKLFGVMKASGISVDSCIYVIF 278



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/314 (30%), Positives = 151/314 (48%), Gaps = 14/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +EA  IF+ M      P  ++  +L+ G  C  K +       LF  +   G+ P+L  +
Sbjct: 79  DEAKEIFEEMKAQGMIPNVISYSSLVHGFCCAGKLEESK---RLFNEMVDQGVQPNLVQF 135

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N+LI+  CK G+V     +L   ++     D V + SLI G C    +  A  LF  + +
Sbjct: 136 NVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGFCKIGDLSSARKLFLSMPS 195

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            GC+ N I+Y+ LING C+      A+NL+ EM        V  +PN  TY+T++ GL +
Sbjct: 196 KGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQ------VGKRPNVKTYSTLLTGLLQ 249

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G V  A +LF  MK   I+ D   Y   + G C      EA  L  E+     + D  +
Sbjct: 250 TGKVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGVLFEAMELFNELKSYNFKLDFES 309

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++ ++D LCK GK++ A    + +   G+ PN  T + ++ GFC   +V+ A  LF  ME
Sbjct: 310 YSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNIMIHGFCRVEQVDKANILFEKME 369

Query: 386 SM---GCKHTVFSY 396
            M   GC   + +Y
Sbjct: 370 KMEENGCTPDIITY 383



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/299 (30%), Positives = 151/299 (50%), Gaps = 18/299 (6%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ M++ +   P L  FN+L   L K         L +     G+  DL TYN LI+ F
Sbjct: 119 LFNEMVD-QGVQPNLVQFNVLIDILCKEGKVIEAKKLLEVTIQRGIILDLVTYNSLIDGF 177

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+G +S    +   +       + +++T LI G C   ++ EA  L+ ++   G +PNV
Sbjct: 178 CKIGDLSSARKLFLSMPSKGCEHNEISYTILINGYCKIWKVEEAMNLYNEMPQVGKRPNV 237

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV----CKPNTVTYTTIIDGLCKEGF 268
            TYSTL+ GL +TG          ++ + N  FGV+       ++  Y   +DGLCK G 
Sbjct: 238 KTYSTLLTGLLQTG----------KVGDANKLFGVMKASGISVDSCIYVIFLDGLCKNGV 287

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A ELF ++K  N   D  +Y+ LI G C A     A     ++  +G+QP+VVT N+
Sbjct: 288 LFEAMELFNELKSYNFKLDFESYSRLIDGLCKAGKVEIAWEFFKQLSQEGLQPNVVTCNI 347

Query: 329 IMDELCKNGKMDEASRL---LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++   C+  ++D+A+ L   +E M   G  P+  T++TL+ GFC + ++     L   M
Sbjct: 348 MIHGFCRVEQVDKANILFEKMEKMEENGCTPDIITYNTLLRGFCESNKLEEVVNLLHKM 406


>gi|242082678|ref|XP_002441764.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
 gi|241942457|gb|EES15602.1| hypothetical protein SORBIDRAFT_08g002022 [Sorghum bicolor]
          Length = 695

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 161/343 (46%), Gaps = 42/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M  M  SP  +T +N L     K    + V  L   +  +G   D+ TYN L
Sbjct: 218 EARALFVRMKAMGCSPDVVT-YNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNAL 276

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCF K GR+   +   G + R     + V F++ +   C E  + EA  LF +++  G 
Sbjct: 277 INCFSKFGRMEKAYSYFGEMKRQGVVANVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRGM 336

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN  TY++L++G C+ G    A+ L +EM +     G+V  PN VTYT ++DGLCKEG 
Sbjct: 337 MPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ----GLV--PNVVTYTVMVDGLCKEGK 390

Query: 269 V-----------------------------------DKAKELFLQMKDKNINPDVVTYNS 293
           V                                   ++A +L  QMK+K +  DV  Y +
Sbjct: 391 VAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLYGT 450

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI G C     +EA  LL +M   G++P+ V +  IMD L K GK  EA  LL  ++  G
Sbjct: 451 LIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAVALLHKILDSG 510

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             PN  T+  L+DG C  G ++ A   F  M  +G    V +Y
Sbjct: 511 FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAY 553



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 101/293 (34%), Positives = 155/293 (52%), Gaps = 10/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N +   LA+ +    V  LF  L      P+++T+NI+I+  CK G +     
Sbjct: 166 PPNTRTCNHILLRLARNRQGGLVRRLFDLLP----VPNVFTFNIVIDFLCKEGELVEARA 221

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+     +PD V + SLI G      + E   L ++++  GC  +V+TY+ LIN   
Sbjct: 222 LFVRMKAMGCSPDVVTYNSLIDGYGKCGDLEEVEQLVSEMRKSGCAADVVTYNALINCFS 281

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A + F EM     + GVV   N VT++T +D  CKEG V +A +LF QM+ + 
Sbjct: 282 KFGRMEKAYSYFGEMK----RQGVVA--NVVTFSTFVDAFCKEGLVQEAMKLFAQMRVRG 335

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+  TY SL+ G C A   ++A  LL EM+ QG+ P+VVT+ V++D LCK GK+ EA 
Sbjct: 336 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAEAD 395

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L LM   GV  N   ++TL+ G  +      A +L   M++ G +  V  Y
Sbjct: 396 NVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKGMELDVSLY 448



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 161/338 (47%), Gaps = 18/338 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITP-----------NEAFCIFDYMLNMRPSPPPLTSF 110
           D   +EQ + E  KS    D+                 +A+  F  M   +     + +F
Sbjct: 250 DLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEM-KRQGVVANVVTF 308

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           +       K       + LF ++   G+ P+ +TY  L++  CK GR+    V+L  ++ 
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVH 368

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ V +T ++ GLC E ++ EA  + + ++  G K N + Y+TLI+G     ++  
Sbjct: 369 QGLVPNVVTYTVMVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSER 428

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL+L  +M N   +  V        Y T+I GLCK+  VD+AK L  +M    + P+ V 
Sbjct: 429 ALDLLNQMKNKGMELDVS------LYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVI 482

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y +++     A   +EA  LL +++D G QP+VVT+  ++D LCK G + EA      M 
Sbjct: 483 YTTIMDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMR 542

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             G++PN   ++ L+DGFC  G +N A  L   M   G
Sbjct: 543 ELGLDPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKG 580



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/336 (25%), Positives = 150/336 (44%), Gaps = 42/336 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F  M  +R   P   ++  L     K    D  + L   +   GL P++ TY +
Sbjct: 322 QEAMKLFAQM-RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTV 380

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG--------------------- 186
           +++  CK G+V+    VL  + R     + + +T+LI G                     
Sbjct: 381 MVDGLCKEGKVAEADNVLSLMERGGVKANELLYTTLIHGHFMNNNSERALDLLNQMKNKG 440

Query: 187 --------------LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                         LC + ++ EA +L  K+   G +PN + Y+T+++ L + G    A+
Sbjct: 441 MELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTIMDALFKAGKESEAV 500

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L  ++ +         +PN VTY  +IDGLCK G + +A   F +M++  ++P+V  Y 
Sbjct: 501 ALLHKILDSG------FQPNVVTYCALIDGLCKAGSISEAISHFNKMRELGLDPNVQAYT 554

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI GFC     N+A  L+ EM+D+G+  D V +  ++D   K   + +A  L   MI  
Sbjct: 555 ALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDAFALKTKMIES 614

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G+  +   ++  + GFC    +  A+ +   M   G
Sbjct: 615 GLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 650



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/264 (30%), Positives = 133/264 (50%), Gaps = 6/264 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           +  L L  ++ + G+  D+  Y  LI   CK  +V     +L ++      P+ V +T++
Sbjct: 427 ERALDLLNQMKNKGMELDVSLYGTLIWGLCKDQKVDEAKSLLHKMAGCGLRPNTVIYTTI 486

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           +  L    +  EA AL  K+   G +PNV+TY  LI+GLC+ G    A++ F +M     
Sbjct: 487 MDALFKAGKESEAVALLHKILDSGFQPNVVTYCALIDGLCKAGSISEAISHFNKMR---- 542

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           + G+   PN   YT +IDG CK G ++KA  L  +M DK ++ D V Y SLI G+    +
Sbjct: 543 ELGL--DPNVQAYTALIDGFCKIGSLNKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQAN 600

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             +A  L  +M++ G+Q D+  +   +   C    M EA  +L  MI  G+ P+ + ++ 
Sbjct: 601 LQDAFALKTKMIESGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNC 660

Query: 364 LMDGFCLTGRVNHAKELFVSMESM 387
           L+  +   G +  A  L   MES+
Sbjct: 661 LIRKYQKLGNMEEASSLQNEMESV 684



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/215 (33%), Positives = 106/215 (49%), Gaps = 10/215 (4%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +L+  L     + +A     +++     PN  T + ++  L R     +   LF+     
Sbjct: 139 TLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFD----- 193

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                ++  PN  T+  +ID LCKEG + +A+ LF++MK    +PDVVTYNSLI G+   
Sbjct: 194 -----LLPVPNVFTFNIVIDFLCKEGELVEARALFVRMKAMGCSPDVVTYNSLIDGYGKC 248

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            D  E   L+ EM   G   DVVT+N +++   K G+M++A      M  +GV  N  TF
Sbjct: 249 GDLEEVEQLVSEMRKSGCAADVVTYNALINCFSKFGRMEKAYSYFGEMKRQGVVANVVTF 308

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ST +D FC  G V  A +LF  M   G     F+Y
Sbjct: 309 STFVDAFCKEGLVQEAMKLFAQMRVRGMMPNEFTY 343



 Score = 40.8 bits (94), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 56/118 (47%), Gaps = 1/118 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  + + M++   S   +   +L+ G + +    D   +L  ++  +GL  DLY Y  
Sbjct: 567 NKAMHLMNEMIDKGMSLDKVVYTSLIDGYMKQANLQDA-FALKTKMIESGLQLDLYCYTC 625

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+ FC M  +     VL  ++ +  TPD   +  LI+       + EA++L  ++++
Sbjct: 626 FISGFCNMNMMQEARGVLSEMIGTGITPDKTVYNCLIRKYQKLGNMEEASSLQNEMES 683


>gi|302756535|ref|XP_002961691.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
 gi|300170350|gb|EFJ36951.1| hypothetical protein SELMODRAFT_403786 [Selaginella moellendorffii]
          Length = 545

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 158/294 (53%), Gaps = 9/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+ ++   L K++  D  ++LFK++    ++PD+ TY  LI+   K  RV   + +
Sbjct: 203 PNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDL 262

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
                     P  V + ++I GLC   RI  A  L+  + +    KP++ TYS LINGL 
Sbjct: 263 FEEARAKGCHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLN 322

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            +     A  L+EEM +        C P+ VTY T++DGLCK G  DKA E+F +M   N
Sbjct: 323 LSNRGEKAYELYEEMLDTG------CSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN 376

Query: 284 I-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           + +P+V+TY  LI  FC  +   +A  L  EM  + + PD VTF  ++ +LCK  ++DEA
Sbjct: 377 VCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEA 436

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L E  I +   P++  F+T++ G+C   R++ AK+L   M   GC  T+ +Y
Sbjct: 437 HELFE-SIGKTCKPDSVLFNTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATY 489



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/302 (31%), Positives = 166/302 (54%), Gaps = 8/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M++ +   P + ++  L   L K +       LF+   + G  P + TYN 
Sbjct: 222 DKAITLFKQMVD-KAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTVVTYNT 280

Query: 148 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +I+  CK GR+ +   +   ++R     PD   +++LI GL   +R  +A  L+ ++   
Sbjct: 281 MIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDT 340

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P+V+TY+TL++GLC++G    A+ +F +M  GN     VC PN +TYT +ID  CK 
Sbjct: 341 GCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVGN-----VCDPNVITYTVLIDRFCKV 395

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +  A +L  +M+ +++ PD VT+ ++I   C  +  +EA+ L  E + +  +PD V F
Sbjct: 396 DRLGDAVKLAKEMEGRSLLPDAVTFTTVIQKLCKESRIDEAHELF-ESIGKTCKPDSVLF 454

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++   CK  ++D+A +L + M+  G  P  +T++ L+ GFC TGR + A  ++  M  
Sbjct: 455 NTMLAGYCKITRIDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIE 514

Query: 387 MG 388
           MG
Sbjct: 515 MG 516



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 159/335 (47%), Gaps = 41/335 (12%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           PN A+ +F +            + N L     K +  +     F+        PD  +YN
Sbjct: 82  PNTAWEVFQWAGKQSKFTHNRFTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYN 141

Query: 147 ILINCFCKMGRVSHGFVVLGR-------ILRS--------------------------CF 173
            L+N F K G V     + G        +LRS                           F
Sbjct: 142 TLMNGFFKAGDVKKALALFGEMKDSGIAVLRSHNIVLRGLCSGGKISMAWEVFKDMSGIF 201

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +P+ +++T +I GLC   ++ +A  LF ++      P+V+TY  LI+GL +      A +
Sbjct: 202 SPNLISYTIMIDGLCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYD 261

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYN 292
           LFEE A   G     C P  VTY T+IDGLCK G ++ A  L+  M ++ ++ PD+ TY+
Sbjct: 262 LFEE-ARAKG-----CHPTVVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYS 315

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI+G   +N   +A  L  EM+D G  PDVVT+N ++D LCK+G  D+A  +   M + 
Sbjct: 316 ALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLLDGLCKSGCEDKAMEIFRKMGVG 375

Query: 353 GV-NPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            V +PN  T++ L+D FC   R+  A +L   ME 
Sbjct: 376 NVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEG 410



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/255 (34%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           +T N L++ + K  RV    +     +++ F PD V++ +L+ G      + +A ALF +
Sbjct: 103 FTCNNLLSVYVKARRVEDAHLFFQSHMKNVFEPDEVSYNTLMNGFFKAGDVKKALALFGE 162

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           +K  G    + +++ ++ GLC  G   +A  +F++M+        +  PN ++YT +IDG
Sbjct: 163 MKDSGIAV-LRSHNIVLRGLCSGGKISMAWEVFKDMSG-------IFSPNLISYTIMIDG 214

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK   VDKA  LF QM DK I PDVVTY +LI G        EA  L  E   +G  P 
Sbjct: 215 LCKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPT 274

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           VVT+N ++D LCK G+++ A  L + M+    + P+  T+S L++G  L+ R   A EL+
Sbjct: 275 VVTYNTMIDGLCKCGRIENALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELY 334

Query: 382 VSMESMGCKHTVFSY 396
             M   GC   V +Y
Sbjct: 335 EEMLDTGCSPDVVTY 349



 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/234 (26%), Positives = 116/234 (49%), Gaps = 8/234 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  ++D M+      P + +++ L   L  +   +    L++ +  TG  PD+ TYN L+
Sbjct: 294 ALTLYDDMVREPHLKPDMFTYSALINGLNLSNRGEKAYELYEEMLDTGCSPDVVTYNTLL 353

Query: 150 NCFCKMGRVSHGFVVLGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  CK G       +  ++ + +   P+ + +T LI   C   R+ +A  L  +++    
Sbjct: 354 DGLCKSGCEDKAMEIFRKMGVGNVCDPNVITYTVLIDRFCKVDRLGDAVKLAKEMEGRSL 413

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ +T++T+I  LC+      A  LFE +       G  CKP++V + T++ G CK   
Sbjct: 414 LPDAVTFTTVIQKLCKESRIDEAHELFESI-------GKTCKPDSVLFNTMLAGYCKITR 466

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           +D AK+L  +M D    P + TY +L+ GFC    +++A  +  EM++ G  P+
Sbjct: 467 IDDAKKLHDRMLDSGCAPTLATYTALVTGFCRTGRYSDALIMYHEMIEMGFPPE 520


>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 874

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 100/303 (33%), Positives = 166/303 (54%), Gaps = 3/303 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  M+  R SP   T FNLL G L  + H +    LF ++ + G  P+ +T+ IL+  +
Sbjct: 134 LYKDMVLARVSPEAYT-FNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGY 192

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G  S G  +LG++      P+ V + +LI   C E +  +A  L  K++  G  P+V
Sbjct: 193 CRAGLASKGLELLGQMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHV 252

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            T+++ I+ LC +G  + A  +F +M   + + G+   PN +TY  ++ G CKEG +++A
Sbjct: 253 ETFNSRISALCGSGKILEASRIFRDMQI-DEELGLP-HPNVITYKLMLMGFCKEGMLEEA 310

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           K L   MK      ++ +YN  + G        EA  +L EM+  G++PD+ ++N++MD 
Sbjct: 311 KTLVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDG 370

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCKNG + +A  L+ LMI  G+ P+T T+STL+ G+C  G+V  A  L   M S  C   
Sbjct: 371 LCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPN 430

Query: 393 VFS 395
            ++
Sbjct: 431 TYT 433



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 172/377 (45%), Gaps = 88/377 (23%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S+N+    L +         + K +   G+ PD+Y+YNI+++  CK G +S   +++G
Sbjct: 326 LESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMG 385

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++R+   PD V +++L+ G C++ ++ EA  L  ++ +  C PN  T + L++ L + G
Sbjct: 386 LMIRNGILPDTVTYSTLLHGYCSKGKVFEANNLLHEMISNNCSPNTYTCNVLLHSLWKEG 445

Query: 227 HTIVALNLFEEMAN--------------------------------------------GN 242
               A NL ++M                                              GN
Sbjct: 446 RISEAENLLQKMNEKGYGVDTVTCNIIINALCNNGQLDKAIEIVNGMWTHGSAALGNLGN 505

Query: 243 GKFGVV--------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
              G+V        C P+ VTY+TII GLCK G +D AK+ F++M  K + PD   Y++ 
Sbjct: 506 SFIGLVDDTISGKKCTPDLVTYSTIISGLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTF 565

Query: 295 IHGFCYAN----------DWNEANC-------------------------LLIEMMDQGV 319
           IH FC             D  +  C                         L+ EM ++GV
Sbjct: 566 IHSFCREGKISSAFQVLKDMEKRGCNKTLQTYNSLILGLGSKNQIFELYGLIDEMREKGV 625

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDV T+N +++ LC+ G++++A  +L+ M+ +G++PN S+F  L+  FC       + E
Sbjct: 626 SPDVCTYNHMLNCLCEGGRINDAPSVLDEMLQKGISPNISSFRILIKAFCKACDFKASHE 685

Query: 380 LF-VSMESMGCKHTVFS 395
           +F +++   G K  +++
Sbjct: 686 VFEIALNVCGHKEALYT 702



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 145/292 (49%), Gaps = 16/292 (5%)

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGFVVLGRI 168
           L   LAK+  ++  +S FK L S   FP+    +Y YN+L+    +  RV     +   +
Sbjct: 81  LVTVLAKSGFFNKAISHFKSLRSN--FPEKQPSIYLYNVLLKSCIRENRVELVSWLYKDM 138

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           + +  +P+A  F  LI  LC    + +A  LF K+ A GC+PN  T+  L+ G CR G  
Sbjct: 139 VLARVSPEAYTFNLLIGLLCDSGHLEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLA 198

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
              L L  +M       G++  PN V Y T+I   CKEG    A++L  +M++  + P V
Sbjct: 199 SKGLELLGQMRT----MGIL--PNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHV 252

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEM-MDQGV---QPDVVTFNVIMDELCKNGKMDEASR 344
            T+NS I   C +    EA+ +  +M +D+ +    P+V+T+ +++   CK G ++EA  
Sbjct: 253 ETFNSRISALCGSGKILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKT 312

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ M       N  +++  + G    G++  A  +   M  +G +  ++SY
Sbjct: 313 LVDTMKRNANFINLESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSY 364



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 91/388 (23%), Positives = 155/388 (39%), Gaps = 87/388 (22%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M++   SP   T  N+L   L K        +L +++N  G   D  T NI+
Sbjct: 414 EANNLLHEMISNNCSPNTYTC-NVLLHSLWKEGRISEAENLLQKMNEKGYGVDTVTCNII 472

Query: 149 INCFCKMGRV-----------SHGFVVLGRILRSCF------------TPDAVAFTSLIK 185
           IN  C  G++           +HG   LG +  S              TPD V ++++I 
Sbjct: 473 INALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIIS 532

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN----- 240
           GLC   R+ +A   F ++ + G +P+   Y T I+  CR G    A  + ++M       
Sbjct: 533 GLCKAGRLDDAKKKFIEMMSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCNK 592

Query: 241 ----------GNGK-------FGVV-------CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
                     G G        +G++         P+  TY  +++ LC+ G ++ A  + 
Sbjct: 593 TLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVL 652

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWN------------------------------- 305
            +M  K I+P++ ++  LI  FC A D+                                
Sbjct: 653 DEMLQKGISPNISSFRILIKAFCKACDFKASHEVFEIALNVCGHKEALYTLMFNELLVGG 712

Query: 306 ---EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  L    +D+        +  ++D LCK+ K++ AS +L  +I +G   + ++F 
Sbjct: 713 KVAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFM 772

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCK 390
            ++DGF   G  + A EL   M  M  +
Sbjct: 773 PVIDGFGKMGNKHVADELAERMMEMASE 800


>gi|225189441|emb|CAR70004.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
           [Arabidopsis thaliana]
          Length = 278

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 87/220 (39%), Positives = 134/220 (60%), Gaps = 7/220 (3%)

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           I  I  ++A  +F  M+  RP  P L  F+  F  +A+TK ++ VL   K+L   G+  +
Sbjct: 64  IVDIKKDDAIALFQEMIRSRP-LPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHN 122

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           +YT NI+INCFC+  +    + VLG++++  + PD   F +LIKGL  E ++ EA  L  
Sbjct: 123 IYTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVD 182

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   GC+P+V+TY++++NG+CR+G T +AL+L  +M   N       K +  TY+TIID
Sbjct: 183 RMVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERN------VKADVFTYSTIID 236

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
            LC++G +D A  LF +M+ K I   VVTYNSL+ G C A
Sbjct: 237 SLCRDGCIDAAISLFKEMETKGIKSSVVTYNSLVRGLCKA 276



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/206 (31%), Positives = 109/206 (52%), Gaps = 6/206 (2%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++RS   P  V F+     +    +         +L+  G   N+ T + +IN  CR   
Sbjct: 79  MIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIMINCFCRCCK 138

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
           T  A ++  ++     K G   +P+T T+ T+I GL  EG V +A  L  +M +    PD
Sbjct: 139 TCFAYSVLGKVM----KLGY--EPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPD 192

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTYNS+++G C + D + A  LL +M ++ V+ DV T++ I+D LC++G +D A  L +
Sbjct: 193 VVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGCIDAAISLFK 252

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGR 373
            M  +G+  +  T+++L+ G C  G+
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGK 278



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 59/203 (29%), Positives = 100/203 (49%), Gaps = 8/203 (3%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNT 253
           +A ALF ++      P+++ +S   + + RT    + L+  +++  NG          N 
Sbjct: 71  DAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAH-------NI 123

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            T   +I+  C+      A  +  ++      PD  T+N+LI G       +EA  L+  
Sbjct: 124 YTLNIMINCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDR 183

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M++ G QPDVVT+N I++ +C++G    A  LL  M  R V  +  T+ST++D  C  G 
Sbjct: 184 MVENGCQPDVVTYNSIVNGICRSGDTSLALDLLRKMEERNVKADVFTYSTIIDSLCRDGC 243

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           ++ A  LF  ME+ G K +V +Y
Sbjct: 244 IDAAISLFKEMETKGIKSSVVTY 266



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 59/127 (46%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A  LF +M      P +V ++           +N       ++   G+  ++ T N++
Sbjct: 70  DDAIALFQEMIRSRPLPSLVDFSRFFSAIARTKQFNLVLDFCKQLELNGIAHNIYTLNIM 129

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++  C+  K   A  +L  ++  G  P+T+TF+TL+ G  L G+V+ A  L   M   GC
Sbjct: 130 INCFCRCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGC 189

Query: 390 KHTVFSY 396
           +  V +Y
Sbjct: 190 QPDVVTY 196


>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
 gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
          Length = 609

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M + R     + SFN +   + +    D   +L +R++  G+ PD+YTY  LI   
Sbjct: 262 VFDEMQS-RGVRRTVVSFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGL 320

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C++GR+     V  ++      P+AV FT LI   C +        L  +++  G +P+ 
Sbjct: 321 CRVGRIEDARGVFEKMCGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDA 380

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ ++NGLCR      A  +  EM +         +P+TVTYTT+IDG CKE  +D A
Sbjct: 381 VTYNAIVNGLCRARDLKSASGIVVEMRSAG------LRPDTVTYTTLIDGYCKEEELDMA 434

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            E+   M  + +  D VTY +LI G   A    +A  +L EMM+ G++PD  T+ +++D 
Sbjct: 435 MEIKQNMVAEGVGLDEVTYTALISGLSKAGRSADAERVLGEMMEAGLEPDNTTYTMVIDA 494

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C+ G +    RLL+ M  +G  P   T++ +M+GFC  G++ +A  L  +M ++G    
Sbjct: 495 FCRKGDVKTGLRLLKEMQNKGRKPGVVTYNVIMNGFCKLGQMKNADMLLNAMINIGVSPD 554

Query: 393 VFSY 396
             +Y
Sbjct: 555 DITY 558



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 138/269 (51%), Gaps = 6/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           + + +L   GL P+   +N+L+    ++G ++    V   +         V+F ++I G+
Sbjct: 226 AFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGM 285

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    +  A  L  ++   G  P+V TY  LI GLCR G    A  +FE+M  G G    
Sbjct: 286 CRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMC-GRG---- 340

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             KPN V +T +ID  CK+G  +   EL  +M+++ + PD VTYN++++G C A D   A
Sbjct: 341 -MKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 399

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           + +++EM   G++PD VT+  ++D  CK  ++D A  + + M+  GV  +  T++ L+ G
Sbjct: 400 SGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTALISG 459

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               GR   A+ +   M   G +    +Y
Sbjct: 460 LSKAGRSADAERVLGEMMEAGLEPDNTTY 488



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/202 (29%), Positives = 100/202 (49%), Gaps = 6/202 (2%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA A + +L   G  P    ++ L+  L R G    A N+F+EM +         +   V
Sbjct: 223 EACAFYLQLLDAGLPPEAKLFNVLMRDLVRLGELASAQNVFDEMQSRG------VRRTVV 276

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           ++ T+I G+C+ G +D A+ L  +M +  + PDV TY +LI G C      +A  +  +M
Sbjct: 277 SFNTMISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKM 336

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +G++P+ V F +++D  CK G  +    L   M  RGV P+  T++ +++G C    +
Sbjct: 337 CGRGMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDL 396

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  + V M S G +    +Y
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTY 418



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 3/133 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            +EG +  A  L L    + I  +  +   L+  F  A    EA    ++++D G+ P+ 
Sbjct: 184 AEEGLLPDACTLVLLALRRGIRLEPTSCTGLMSRFPTAP---EACAFYLQLLDAGLPPEA 240

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             FNV+M +L + G++  A  + + M  RGV     +F+T++ G C  G ++ A+ L   
Sbjct: 241 KLFNVLMRDLVRLGELASAQNVFDEMQSRGVRRTVVSFNTMISGMCRAGDLDGAETLHRR 300

Query: 384 MESMGCKHTVFSY 396
           M   G    V++Y
Sbjct: 301 MSEAGVTPDVYTY 313


>gi|410109873|gb|AFV61016.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           citrodora]
          Length = 380

 Score =  179 bits (455), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 101/285 (35%), Positives = 157/285 (55%), Gaps = 6/285 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           PL +   +   L K K++  V   +K +   G    LY +NIL+  FCK G +    +VL
Sbjct: 98  PLDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMQRFCKEGDIRVAQLVL 157

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             I +    P  V+F +LI G      + E   L + + A G +P+V TYS LINGLC+ 
Sbjct: 158 NAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKE 217

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                A  LF+EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++
Sbjct: 218 SKMDDANELFDEMLDK----GMV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 271

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD++TYN+LI+G C   +  +A+ L+ EM  +G++PD +T+  ++D  CK G M+ A   
Sbjct: 272 PDLITYNTLIYGLCKKGELKQAHDLIDEMSMEGLKPDKITYTTLIDGCCKEGDMETAFEH 331

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            + MI   +  +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 332 QKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLK 376



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 77/255 (30%), Positives = 135/255 (52%), Gaps = 6/255 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K         +   +   GL P + ++N LIN + ++G +  GF 
Sbjct: 131 PASLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFR 190

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 191 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTFTTLIDGHC 250

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  + 
Sbjct: 251 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGELKQAHDLIDEMSMEG 304

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 305 LKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 364

Query: 344 RLLELMILRGVNPNT 358
           ++L  M+  G+ PNT
Sbjct: 365 KMLREMLSVGLKPNT 379



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L+   C+ G   VA    + + N   K+G+  +P+ V++ T+I+G  + 
Sbjct: 129 GYPASLYFFNILMQRFCKEGDIRVA----QLVLNAITKWGL--RPSVVSFNTLINGYIRL 182

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M    + PDV TY+ LI+G C  +  ++AN L  EM+D+G+ P+ VTF
Sbjct: 183 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGMVPNGVTF 242

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D A  + + M+ + ++P+  T++TL+ G C  G +  A +L   M  
Sbjct: 243 TTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGELKQAHDLIDEMSM 302

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 303 EGLKPDKITY 312



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC       A +L + + +  GK      F  +       + +   ++ +I 
Sbjct: 13  SYCTMIHFLCTHQMLSEAKSLIQVVVSRKGKGSASAVFAAILETKGTQRSDIYVFSGLIT 72

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E +   ++      + T   ++        +        E+++ G   
Sbjct: 73  AYLESGFLRDAIECYRLTREHKFWVPLDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPA 132

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G +  A  +L  +   G+ P+  +F+TL++G+   G ++    L 
Sbjct: 133 SLYFFNILMQRFCKEGDIRVAQLVLNAITKWGLRPSVVSFNTLINGYIRLGDLDEGFRLK 192

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 193 SAMHASGVQPDVYTY 207


>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
          Length = 850

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 178/349 (51%), Gaps = 22/349 (6%)

Query: 52  LKESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSP---PPL 107
           L E L++ +  D A+    L E C++    D        A  IFD M    PS    P L
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMD--------AERIFDEM----PSQGVVPDL 498

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            SF+ L G L+K    D  L  F+ + + GL PD   Y ILI  FC+ G +S    V   
Sbjct: 499 VSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 558

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L      D V + +++ GLC E  + EA  LFT++   G  P+  T++TLING  + G+
Sbjct: 559 MLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGN 618

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ LFE M   N       KP+ VTY T+IDG CK   ++K  EL+  M  + I P+
Sbjct: 619 MNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 672

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            ++Y  LI+G+C     +EA  L  EM+++G +  ++T N I+   C+ G   +A   L 
Sbjct: 673 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 732

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+L+G+ P+  T++TL++GF     ++ A  L   ME+ G    V +Y
Sbjct: 733 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 781



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++   L K +  +   S    +   G+FPD+ TYN LIN +C+ G +   F ++  +
Sbjct: 360 TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 419

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P    + ++I GLC   + + A  +  ++   G  P+  TY+ L+   CR  + 
Sbjct: 420 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 479

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A  +F+EM +     GVV  P+ V+++ +I  L K G +D+A + F  MK+  + PD 
Sbjct: 480 MDAERIFDEMPSQ----GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN 533

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  LI GFC     +EA  +  EM++QG   DVVT+N I++ LCK   + EA  L   
Sbjct: 534 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTYNTILNGLCKEKMLSEADELFTE 593

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL++G+   G +N A  LF  M     K  V +Y
Sbjct: 594 MTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTY 641



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +    +    L   ++  GL P ++TYN +IN  CK G+      V
Sbjct: 391 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 450

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L+   +PD   +  L+   C    +M+A  +F ++ + G  P+++++S LI  L +
Sbjct: 451 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 510

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL  F +M N          P+ V YT +I G C+ G + +A ++  +M ++  
Sbjct: 511 NGCLDQALKYFRDMKNAG------LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 564

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DVVTYN++++G C     +EA+ L  EM ++GV PD  TF  +++   K+G M++A  
Sbjct: 565 XLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVT 624

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           L E+MI R + P+  T++TL+DGFC    +    EL+  M S
Sbjct: 625 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMIS 666



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + D M + +   P + ++N +   L KT  Y     +   +   G+ PD  TYNIL
Sbjct: 411 EAFELMDSM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 469

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+   +     +   +      PD V+F++LI  L     + +A   F  +K  G 
Sbjct: 470 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 529

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ + Y+ LI G CR G    AL + +EM          C  + VTY TI++GLCKE  
Sbjct: 530 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG------CXLDVVTYNTILNGLCKEKM 583

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A ELF +M ++ + PD  T+ +LI+G+    + N+A  L   M+ + ++PDVVT+N 
Sbjct: 584 LSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 643

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK  +M++ + L   MI R + PN  ++  L++G+C  G V+ A  L+  M   G
Sbjct: 644 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 703

Query: 389 CKHTVFS 395
            + T+ +
Sbjct: 704 FEATIIT 710



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 7/291 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           PL  F+LL     + +        F+ L S GL   +   N L+    K+G V   + + 
Sbjct: 288 PLV-FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 346

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             ++RS    +      +I  LC   +I    +  + ++  G  P+V+TY+TLIN  CR 
Sbjct: 347 QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 406

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  L + M+ G G      KP   TY  II+GLCK G   +AK +  +M    ++
Sbjct: 407 GLLEEAFELMDSMS-GKG-----LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 460

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  TYN L+   C  ++  +A  +  EM  QGV PD+V+F+ ++  L KNG +D+A + 
Sbjct: 461 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 520

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M   G+ P+   ++ L+ GFC  G ++ A ++   M   GC   V +Y
Sbjct: 521 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDVVTY 571



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 30/298 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML  +     + ++N +   L K K       LF  +   G+FPD YT+  L
Sbjct: 551 EALKVRDEMLE-QGCXLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 609

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN + K G ++    +   +++    PD V + +LI G C  S + +   L+  + +   
Sbjct: 610 INGYXKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 669

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            PN I+Y  LING C  G    A  L++EM                 G  + G   K   
Sbjct: 670 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 729

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY T+I+G  KE  +D+A  L  +M++  + PDV+TYN +++GF 
Sbjct: 730 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 789

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                 EA  ++++M+++GV PD  T+  +++       + EA R+ + M+ RG  P+
Sbjct: 790 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 847


>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like isoform 1 [Vitis vinifera]
          Length = 610

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 12/295 (4%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P   P TS    F  + KTK    V+ +   L  +G  PD+ TYN+LI+ +CK G + + 
Sbjct: 147 PDIIPCTSLIRGFCRIGKTKKATWVMEI---LEQSGAVPDVITYNVLISGYCKSGEIDNA 203

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             VL R+      PD V + ++++ LC   ++ +A  +  +     C P+VITY+ LI  
Sbjct: 204 LQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEA 260

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+      A+ L +EM N   K      P+ VTY  +I+G+CKEG +D+A +    M  
Sbjct: 261 TCKESGVGQAMKLLDEMRNKGSK------PDVVTYNVLINGICKEGRLDEAIKFLNNMPS 314

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+V+T+N ++   C    W +A  LL +M+ +G  P VVTFN++++ LC+ G +  
Sbjct: 315 YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGR 374

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  +LE M + G  PN+ +++ L+ GFC   +++ A E    M S GC   + +Y
Sbjct: 375 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 429



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 156/300 (52%), Gaps = 9/300 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +L    + P + ++N+L     K+   D  L +  R+N   + PD+ TYN ++   C  G
Sbjct: 174 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSG 230

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++     VL R L+    PD + +T LI+  C ES + +A  L  +++  G KP+V+TY+
Sbjct: 231 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 290

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LING+C+ G    A+     M +    +G  C+PN +T+  I+  +C  G    A++L 
Sbjct: 291 VLINGICKEGRLDEAIKFLNNMPS----YG--CQPNVITHNIILRSMCSTGRWMDAEKLL 344

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M  K  +P VVT+N LI+  C       A  +L +M   G  P+ +++N ++   CK 
Sbjct: 345 SDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKE 404

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            KMD A   L++M+ RG  P+  T++TL+   C  G+V+ A E+   + S GC   + +Y
Sbjct: 405 KKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 464



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 164/328 (50%), Gaps = 15/328 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            ++  CK SG G        +A  + D M N + S P + ++N+L   + K    D  + 
Sbjct: 257 LIEATCKESGVG--------QAMKLLDEMRN-KGSKPDVVTYNVLINGICKEGRLDEAIK 307

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
               + S G  P++ T+NI++   C  GR      +L  +LR   +P  V F  LI  LC
Sbjct: 308 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 367

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +  +  A  +  K+   GC PN ++Y+ L++G C+      A+   + M +        
Sbjct: 368 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG------ 421

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ VTY T++  LCK+G VD A E+  Q+  K  +P ++TYN++I G         A 
Sbjct: 422 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI 481

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  +G++PD++T++ ++  L + GK+DEA +    +   G+ PN  T++++M G 
Sbjct: 482 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 541

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C + + + A +    M S  CK T  +Y
Sbjct: 542 CKSRQTDRAIDFLAYMISKRCKPTEATY 569



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 309 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 368

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     +L ++     TP+++++  L+ G C E ++  A      + + GC P+++T
Sbjct: 369 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 428

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TL+  LC+ G   VA+ +  ++++        C P  +TY T+IDGL K G  ++A +
Sbjct: 429 YNTLLTALCKDGKVDVAVEILNQLSSKG------CSPVLITYNTVIDGLSKVGKTERAIK 482

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K + PD++TY+SL+ G       +EA     ++   G++P+ +T+N IM  LC
Sbjct: 483 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 542

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           K+ + D A   L  MI +   P  +T++ L++G    G    A +L   + S G
Sbjct: 543 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 596



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 132/260 (50%), Gaps = 9/260 (3%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD+     LI  FC++G+      V+  + +S   PD + +  LI G C    I  A
Sbjct: 144 GDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNA 203

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +  ++      P+V+TY+T++  LC +G    A+ + +            C P+ +TY
Sbjct: 204 LQVLDRMNV---APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE------CYPDVITY 254

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T +I+  CKE  V +A +L  +M++K   PDVVTYN LI+G C     +EA   L  M  
Sbjct: 255 TILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPS 314

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G QP+V+T N+I+  +C  G+  +A +LL  M+ +G +P+  TF+ L++  C  G +  
Sbjct: 315 YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGR 374

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A ++   M   GC     SY
Sbjct: 375 AIDILEKMPMHGCTPNSLSY 394



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 83/245 (33%), Positives = 128/245 (52%), Gaps = 9/245 (3%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
             + G +  GF  L  ++     PD +  TSLI+G C   +  +A  +   L+  G  P+
Sbjct: 124 LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 183

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           VITY+ LI+G C++G    AL + + M            P+ VTY TI+  LC  G + +
Sbjct: 184 VITYNVLISGYCKSGEIDNALQVLDRMN---------VAPDVVTYNTILRTLCDSGKLKQ 234

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A E+  +   K   PDV+TY  LI   C  +   +A  LL EM ++G +PDVVT+NV+++
Sbjct: 235 AMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLIN 294

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            +CK G++DEA + L  M   G  PN  T + ++   C TGR   A++L   M   GC  
Sbjct: 295 GICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSP 354

Query: 392 TVFSY 396
           +V ++
Sbjct: 355 SVVTF 359



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 354 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 413

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V + +L+  LC + ++  A  +  +L + GC P +ITY+T+I+GL 
Sbjct: 414 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 472

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L +EM           KP+ +TY++++ GL +EG VD+A + F  ++   
Sbjct: 473 KVGKTERAIKLLDEMRRKG------LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 526

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ +TYNS++ G C +   + A   L  M+ +  +P   T+ ++++ +   G   EA 
Sbjct: 527 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 586

Query: 344 RLLELMILRGVNPNTST 360
            LL  +  RG+   +S 
Sbjct: 587 DLLNELCSRGLVKKSSA 603


>gi|357437447|ref|XP_003588999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478047|gb|AES59250.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 458

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 157/267 (58%), Gaps = 9/267 (3%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           +K + + G   D Y+Y  LIN  CK+G  +   +   ++LR  F PD V +T++I  +C 
Sbjct: 128 YKVVVARGFDVDHYSYGTLINGLCKVGGDTRAAL---QLLRQAFEPDVVMYTTVIDNMCK 184

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           ++ + +A  L+ ++ A G  PNV+TY+ LI+G C  G    AL LF++M + N       
Sbjct: 185 DTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMISEN------I 238

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN  T+  ++D  CKEG +++AK +   M +K++  DVV Y+SL++G+C  N+  +A  
Sbjct: 239 NPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQS 298

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +   M ++ +  DV ++N++++E CK   +DEA +L E M L+ + P+  T+ TL+DG C
Sbjct: 299 IFKTMAERELSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQIFPDVVTYHTLIDGLC 358

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            +GR+++A EL   M+  G    + +Y
Sbjct: 359 KSGRLSYAMELVDEMDDRGEPPNIITY 385



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/260 (35%), Positives = 138/260 (53%), Gaps = 21/260 (8%)

Query: 140 PDLYTYNILINCFCKMGRVS-HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           P L+T  ILI     + RV  H FV   +I+   +   A   T+ IKG+C    I  A  
Sbjct: 74  PRLFTKKILIF----INRVLLHSFV---KIICQYYII-APPLTTPIKGICQTGDIQRALN 125

Query: 199 LFTKLK-AFGCKPNVITYSTLINGLCRTG-HTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
              K+  A G   +  +Y TLINGLC+ G  T  AL L  +            +P+ V Y
Sbjct: 126 FHYKVVVARGFDVDHYSYGTLINGLCKVGGDTRAALQLLRQ----------AFEPDVVMY 175

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+ID +CK+ FV+ A +L+ +M    I+P+VVTY +LI GFC      EA  L  +M+ 
Sbjct: 176 TTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGLFKKMIS 235

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P+V TFN ++D  CK GK++EA  +L  M+ + +  +   +S+LM+G+CL   V  
Sbjct: 236 ENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFK 295

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+ +F +M      + V SY
Sbjct: 296 AQSIFKTMAERELSYDVRSY 315



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 119/232 (51%), Gaps = 6/232 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   + K    +    L+  + ++G+ P++ TY  LI+ FC +G++     +
Sbjct: 170 PDVVMYTTVIDNMCKDTFVNDAFDLYYEMVASGISPNVVTYTALIDGFCVVGKLEEALGL 229

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+   F  L+   C E +I EA  +   +     K +V+ YS+L+NG C 
Sbjct: 230 FKKMISENINPNVYTFNGLVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCL 289

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA     + V       +Y  +I+  CK   VD+A +LF +M  K I
Sbjct: 290 VNEVFKAQSIFKTMAERELSYDV------RSYNIMINEFCKMKMVDEAIKLFEEMPLKQI 343

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            PDVVTY++LI G C +   + A  L+ EM D+G  P+++T+  I+D LCKN
Sbjct: 344 FPDVVTYHTLIDGLCKSGRLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKN 395



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 68/216 (31%), Positives = 113/216 (52%), Gaps = 7/216 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M+    SP  +T   L+ G     K  +  L LFK++ S  + P++YT+N 
Sbjct: 189 NDAFDLYYEMVASGISPNVVTYTALIDGFCVVGK-LEEALGLFKKMISENINPNVYTFNG 247

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G++     VL  ++      D VA++SL+ G C  + + +A ++F  +    
Sbjct: 248 LVDAFCKEGKIEEAKNVLNTMMEKDLKSDVVAYSSLMNGYCLVNEVFKAQSIFKTMAERE 307

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +V +Y+ +IN  C+      A+ LFEEM            P+ VTY T+IDGLCK G
Sbjct: 308 LSYDVRSYNIMINEFCKMKMVDEAIKLFEEMPLKQ------IFPDVVTYHTLIDGLCKSG 361

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
            +  A EL  +M D+   P+++TY  ++   C  +D
Sbjct: 362 RLSYAMELVDEMDDRGEPPNIITYCPIVDVLCKNHD 397


>gi|449463537|ref|XP_004149490.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Cucumis sativus]
          Length = 786

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 105/308 (34%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   F  M N R + P   S N L   L+K+ +   V   F  +   G+ P ++TYN++
Sbjct: 237 EANECFSRMRNFR-TLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVM 295

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G + +   +  ++     +PD V + SLI G      + E A+LF ++K  GC
Sbjct: 296 IDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGC 355

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITY+ LIN  C+      A   F EM N NG      KPN VTY+T+ID  CKEG 
Sbjct: 356 VPDIITYNGLINCYCKFEKMPRAFEYFSEMKN-NG-----LKPNVVTYSTLIDAFCKEGM 409

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +LF+ M+   + P+  TY SLI   C A +  EA  LL +M+  GV+ ++VT+  
Sbjct: 410 MQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTA 469

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK G+M EA  +   M+  G++PN   ++ L+ G+    R+  A ++   M    
Sbjct: 470 LLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECN 529

Query: 389 CKHTVFSY 396
            K  +  Y
Sbjct: 530 IKPDLILY 537



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M  M  SP  +T +N L     K    + V SLF  +   G  PD+ TYN LINC+
Sbjct: 311 LFVQMREMGLSPDVVT-YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCY 369

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  ++   F     +  +   P+ V +++LI   C E  +  A  LF  ++  G  PN 
Sbjct: 370 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNE 429

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY++LI+  C+ G+   A  L  +M       GV  K N VTYT ++DGLCK G + +A
Sbjct: 430 FTYTSLIDANCKAGNLTEAWKLLNDMLQA----GV--KLNIVTYTALLDGLCKAGRMIEA 483

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           +E+F  M    I+P+   Y +L+HG+  A    +A  +L +M +  ++PD++ +  I+  
Sbjct: 484 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 543

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C   K++E   +LE M  RG++ N    +T++D +   G+ + A   F  M+ +G + T
Sbjct: 544 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 603

Query: 393 VFSY 396
           + +Y
Sbjct: 604 IVTY 607



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/334 (26%), Positives = 149/334 (44%), Gaps = 31/334 (9%)

Query: 94  FDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           F+Y   M+ +   P + +++ L     K       + LF  +  TGL P+ +TY  LI+ 
Sbjct: 379 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDA 438

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK G ++  + +L  +L++    + V +T+L+ GLC   R++EA  +F  +   G  PN
Sbjct: 439 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 498

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVVC----------------- 249
              Y+ L++G  +      A+ + ++M   N K     +G +                  
Sbjct: 499 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 558

Query: 250 -------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                    N V  TTIID   K G    A   F +M+D  +   +VTY  LI G C A 
Sbjct: 559 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCKAG 618

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
               A      M+  G+QP+V  +  ++D LCKN  ++ A +L + M  RG+ P+ + F+
Sbjct: 619 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFT 678

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+DG    G +  A  L   M  +  +  +  Y
Sbjct: 679 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVY 712



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 136/282 (48%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L K         +F+ +   G+ P+   Y  L++ + K  R+     +L 
Sbjct: 464 IVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILK 523

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++      PD + + S+I G C++ ++ E   +  ++K+ G   N +  +T+I+   + G
Sbjct: 524 QMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAG 583

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            +  ALN F+EM +      V  +   VTY  +IDGLCK G V+ A + F +M    + P
Sbjct: 584 KSSDALNFFQEMQD------VGVEATIVTYCVLIDGLCKAGIVELAVDYFCRMLSLGLQP 637

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V  Y SLI G C  N    A  L  EM  +G+ PD+  F  ++D   K+G + EA  L+
Sbjct: 638 NVAVYTSLIDGLCKNNCIESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLI 697

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M    +  +   +++L+ GF   G ++ A++ F  M   G
Sbjct: 698 SRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 739



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 123/253 (48%), Gaps = 6/253 (2%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            +++L + F ++G +        R+      P A +   L+  L            F  +
Sbjct: 221 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 280

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G  P+V TY+ +I+ LC+ G    +  LF +M     + G+   P+ VTY ++IDG 
Sbjct: 281 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR----EMGL--SPDVVTYNSLIDGY 334

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            K G +++   LF +MKD    PD++TYN LI+ +C       A     EM + G++P+V
Sbjct: 335 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 394

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT++ ++D  CK G M  A +L   M   G+ PN  T+++L+D  C  G +  A +L   
Sbjct: 395 VTYSTLIDAFCKEGMMQGAIKLFVDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 454

Query: 384 MESMGCKHTVFSY 396
           M   G K  + +Y
Sbjct: 455 MLQAGVKLNIVTY 467



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C   +  +  +     + G +++A E F +M++    P   + N L+H    + +    
Sbjct: 214 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 273

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                +M+  G+ P V T+NV++D LCK G ++ + RL   M   G++P+  T+++L+DG
Sbjct: 274 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 333

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   G +     LF  M+ +GC   + +Y
Sbjct: 334 YGKVGSLEEVASLFNEMKDVGCVPDIITY 362


>gi|302761606|ref|XP_002964225.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
 gi|300167954|gb|EFJ34558.1| hypothetical protein SELMODRAFT_81759 [Selaginella moellendorffii]
          Length = 580

 Score =  179 bits (455), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 100/331 (30%), Positives = 170/331 (51%), Gaps = 24/331 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +++ M      P  + ++N +  C++K    +    + K +  +   PD + Y  
Sbjct: 190 DEALRLYELMRG-NNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTR 248

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN FCK+G   +  V+LGR+  + + PDAV F  +I GLC  S+  EA  +       G
Sbjct: 249 VINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAG 308

Query: 208 CKPNVITY----------------STLINGLCRTGHTIVALNLFEEMANGNGKF-----G 246
           C+P+ +TY                S L+  LC+TG    A  L E++ NG+ +      G
Sbjct: 309 CEPDEVTYFKLAQERKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGG 368

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             CKP+ V Y+ +ID LC  G  D+   +   M+++ + PD V Y   ++ FC +   ++
Sbjct: 369 DGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDD 428

Query: 307 ANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           A C L+EMM + G  PDV+++N ++  LC  G+ +EA RL ++M+  G+ PN  T++ L+
Sbjct: 429 A-CRLLEMMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLI 487

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              C T ++  A+ LF  M+   C   + +Y
Sbjct: 488 RALCSTKKLEGARHLFNFMKLSKCVPDMETY 518



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/326 (26%), Positives = 144/326 (44%), Gaps = 42/326 (12%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P   +N++FG LAK + +  V  + + L +        T + L+  FCK   V      L
Sbjct: 100 PAHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTFSDSTADALVRIFCKALAVDKAVRFL 159

Query: 166 GRILRSCFTPDAVA---FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            + + S     A++   +  LI+GLC   RI EA  L+  ++      ++ TY+ +I  +
Sbjct: 160 -KWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECI 218

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            + G    A  + + M   +      CKP+   YT +I+G CK G    A  L  +MK+ 
Sbjct: 219 SKLGMVEQAEKVLKTMEESD------CKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEA 272

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE---------- 332
              PD V ++ +I G C  + ++EA  +L   ++ G +PD VT+  +  E          
Sbjct: 273 GYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQERKCPATNLLY 332

Query: 333 ------LCKNGKMDEASRLLE-----------LMILRGVNPNTSTFSTLMDGFCLTGRVN 375
                 LCK GK++ A +LLE           L+   G  P+   +S ++D  C  G  +
Sbjct: 333 SRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTD 392

Query: 376 HAKELFVSMESMGCK-----HTVFSY 396
               +  +ME  G K     +T+F Y
Sbjct: 393 EGFVVVKAMEERGVKPDAVVYTIFLY 418



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 72/227 (31%), Positives = 103/227 (45%), Gaps = 17/227 (7%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-----------NSTGLFPDLYTYNILI 149
           R  P     ++ L  CL KT   +    L + L              G  PD+  Y+I+I
Sbjct: 323 RKCPATNLLYSRLMKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVI 382

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  C MG    GFVV+  +      PDAV +T  +   C  +R+ +A  L   +   GC 
Sbjct: 383 DALCAMGMTDEGFVVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCY 442

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VI+Y+TL+  LC  G    A  LF+ M     + G+  +PN  TYT +I  LC    +
Sbjct: 443 PDVISYNTLLFALCSAGQEEEACRLFQVMV----ETGI--EPNVFTYTQLIRALCSTKKL 496

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + A+ LF  MK     PD+ TY +LI G        EA  LL +  D
Sbjct: 497 EGARHLFNFMKLSKCVPDMETYKALILGHYQNEGVREARQLLEQESD 543



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 112/292 (38%), Gaps = 35/292 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY----------------NIL 148
           P    F+ + G L KT  +D  L + K     G  PD  TY                + L
Sbjct: 276 PDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLAQERKCPATNLLYSRL 335

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFT-----------PDAVAFTSLIKGLCAESRIMEAA 197
           + C CK G+V     +L  +                 PD V ++ +I  LCA     E  
Sbjct: 336 MKCLCKTGKVEAACQLLEDLTNGSRESEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGF 395

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            +   ++  G KP+ + Y+  +   CR+     A  L E M          C P+ ++Y 
Sbjct: 396 VVVKAMEERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAG------CYPDVISYN 449

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++  LC  G  ++A  LF  M +  I P+V TY  LI   C       A  L   M   
Sbjct: 450 TLLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLS 509

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELM--ILRGVNPNTSTFSTLMDG 367
              PD+ T+  ++    +N  + EA +LLE         NP  S  S L + 
Sbjct: 510 KCVPDMETYKALILGHYQNEGVREARQLLEQESDAFSRRNPGKSLLSELHEA 561



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 121/332 (36%), Gaps = 82/332 (24%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           + N +    D   YN ++       R+S    VLG ++    + +  A   L+      +
Sbjct: 21  KQNRSSYKHDSRIYNQVVRNLAAAKRLSDIDSVLGEMMDQGCSLEPEAALDLVVCYANGA 80

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG----- 246
            +  A A+F +L+  G +     Y+ +   L +         + E++   N  F      
Sbjct: 81  MVDRAQAIFNELRHQGQEFPAHIYNVIFGALAKLQRFQDVFRMVEDLMAKNFTFSDSTAD 140

Query: 247 ----VVCKP----------------------NTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
               + CK                       +T  Y  +I+GLCK   +D+A  L+  M+
Sbjct: 141 ALVRIFCKALAVDKAVRFLKWMSSKGLQVAMSTFEYNCLIEGLCKGDRIDEALRLYELMR 200

Query: 281 DKNINPDVVTYNSL-----------------------------------IHGFCYANDWN 305
             N+  D+ TYN++                                   I+GFC   ++ 
Sbjct: 201 GNNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTRVINGFCKLGNFK 260

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST----- 360
            A  LL  M + G  PD V F+ I+  LCK  K DEA  +L++ I  G  P+  T     
Sbjct: 261 NAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAGCEPDEVTYFKLA 320

Query: 361 -----------FSTLMDGFCLTGRVNHAKELF 381
                      +S LM   C TG+V  A +L 
Sbjct: 321 QERKCPATNLLYSRLMKCLCKTGKVEAACQLL 352



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 1/154 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E F +   M   R   P    + +      ++   D    L + +   G +PD+ +YN 
Sbjct: 392 DEGFVVVKAM-EERGVKPDAVVYTIFLYAFCRSARLDDACRLLEMMVEAGCYPDVISYNT 450

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   C  G+      +   ++ +   P+   +T LI+ LC+  ++  A  LF  +K   
Sbjct: 451 LLFALCSAGQEEEACRLFQVMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSK 510

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           C P++ TY  LI G  +      A  L E+ ++ 
Sbjct: 511 CVPDMETYKALILGHYQNEGVREARQLLEQESDA 544


>gi|326527027|dbj|BAK04455.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/326 (33%), Positives = 166/326 (50%), Gaps = 19/326 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK--------TKHYDTVLSLFKRLNST 136
           ++ ++A  +FD +   + +P P  S N     LA+        T      L+LF R+   
Sbjct: 88  LSRDDAHHMFDELFR-QATPVPGRSLNGFLTALARATSSSACITDGPALALALFNRVCRE 146

Query: 137 GLFPDL-----YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
              P +     +TY+IL++C C+  R   G V+ G ILR+      +  ++L+K LC  +
Sbjct: 147 QAGPRVVPLTVHTYSILMDCCCRARRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYAN 206

Query: 192 RIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           R  EA   L  ++   GC PNV +YS ++ GLC    +  AL+LF+ MA    K G  C 
Sbjct: 207 RTEEAVNVLLHRMSELGCVPNVFSYSIILKGLCDNSMSQRALDLFQMMA----KEGGACS 262

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           PN V Y T+I G  KEG   KA  LF +M  + + PDVVTYN +I   C A   ++A  +
Sbjct: 263 PNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M   G QPD VT+N ++      G++ EA+++   M  RG+ PN    ++ +   C 
Sbjct: 323 LRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCK 382

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            GR   A E+F SM + G K  + SY
Sbjct: 383 HGRSKEAAEIFDSMTAKGHKPDIVSY 408



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 146/285 (51%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K        SLF  +   G+ PD+ TYN++I+  CK   +    +V
Sbjct: 263 PNVVAYNTVIHGFFKEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  +   PD V +  +I G     R+ EAA +F K+K+ G  PN++  ++ +  LC+
Sbjct: 323 LRQMTTNGAQPDTVTYNCMIHGYATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCK 382

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G +  A  +F+ M A G+       KP+ V+Y T++ G   EG+      LF  MK   
Sbjct: 383 HGRSKEAAEIFDSMTAKGH-------KPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D   +N LIH +      ++A  +  EM  QGV PDVVT++ ++    + G++ +A 
Sbjct: 436 IAADCRVFNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAM 495

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                M+ RG+ PNT+ + +++ GFC+ G +  AKEL   M + G
Sbjct: 496 EKFNQMVARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKG 540



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 170/358 (47%), Gaps = 22/358 (6%)

Query: 47  TTTAKLKESLRL--TVKDRASL------EQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
            T  +LKE+ ++   +K R  +        FL   CK             EA  IFD M 
Sbjct: 346 ATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHG--------RSKEAAEIFDSM- 396

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             +   P + S+  L    A    +  ++ LF  + S G+  D   +NILI+ + K G V
Sbjct: 397 TAKGHKPDIVSYCTLLHGYASEGWFADMIGLFNSMKSNGIAADCRVFNILIHAYAKRGMV 456

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
               ++   + +   +PD V ++++I       R+ +A   F ++ A G +PN   Y ++
Sbjct: 457 DDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMVARGIQPNTAVYHSI 516

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G C  G  + A  L  EM N       + +P+ V + ++I+ LCK+G V  A ++F  
Sbjct: 517 IQGFCMHGGLVKAKELVSEMINKG-----IPRPDIVFFNSVINSLCKDGRVMDAHDIFDL 571

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           + D    PDV+T+ SLI G+C     ++A  +L  M   GV+ D+VT++ ++D   KNG+
Sbjct: 572 VTDIGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGR 631

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++   L   M  +GV PNT T+  ++ G    GR   A++ F  M   G   TV  Y
Sbjct: 632 INDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIY 689



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/331 (32%), Positives = 163/331 (49%), Gaps = 13/331 (3%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPP--PLT--SFNLLFGCLAKT 120
           SL  FL    +++         P  A  +F+ +   +  P   PLT  ++++L  C  + 
Sbjct: 111 SLNGFLTALARATSSSACITDGPALALALFNRVCREQAGPRVVPLTVHTYSILMDCCCRA 170

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVA 179
           +  D  L LF  +  TGL     T + L+ C C   R      V+L R+      P+  +
Sbjct: 171 RRPDLGLVLFGCILRTGLKIHQITASTLLKCLCYANRTEEAVNVLLHRMSELGCVPNVFS 230

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           ++ ++KGLC  S    A  LF  +   G  C PNV+ Y+T+I+G  + G T  A +LF E
Sbjct: 231 YSIILKGLCDNSMSQRALDLFQMMAKEGGACSPNVVAYNTVIHGFFKEGETGKACSLFHE 290

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M     + GV  KP+ VTY  IID LCK   +DKA+ +  QM      PD VTYN +IHG
Sbjct: 291 MT----RQGV--KPDVVTYNLIIDALCKARAMDKAELVLRQMTTNGAQPDTVTYNCMIHG 344

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +       EA  +  +M  +G+ P++V  N  +  LCK+G+  EA+ + + M  +G  P+
Sbjct: 345 YATLGRLKEAAKMFRKMKSRGLIPNIVICNSFLASLCKHGRSKEAAEIFDSMTAKGHKPD 404

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             ++ TL+ G+   G       LF SM+S G
Sbjct: 405 IVSYCTLLHGYASEGWFADMIGLFNSMKSNG 435



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 151/287 (52%), Gaps = 10/287 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+L    AK    D  + +F  +   G+ PD+ TY+ +I+ F +MGR++       +++
Sbjct: 443 FNILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISAFSRMGRLTDAMEKFNQMV 502

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                P+   + S+I+G C    +++A  L +++   G  +P+++ ++++IN LC+ G  
Sbjct: 503 ARGIQPNTAVYHSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFNSVINSLCKDGRV 562

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F+ + +      +  +P+ +T+T++IDG C  G +DKA ++   M+   +  D+
Sbjct: 563 MDAHDIFDLVTD------IGERPDVITFTSLIDGYCLVGKMDKAFKILDAMEVVGVETDI 616

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY++L+ G+      N+   L  EM  +GV+P+ VT+ +++  L + G+   A +    
Sbjct: 617 VTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           MI  G     S +  ++ G C   R N A E  +  + +G  +  FS
Sbjct: 677 MIESGTTVTVSIYGIILGGLC---RNNCADEAIILFQKLGTMNVKFS 720



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 121/249 (48%), Gaps = 6/249 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+  +N +IN  CK GRV     +   +      PD + FTSLI G C   ++ +A  +
Sbjct: 544 PDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVGKMDKAFKI 603

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              ++  G + +++TYSTL++G  + G     L LF EM     + GV  KPNTVTY  +
Sbjct: 604 LDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQ----RKGV--KPNTVTYGIM 657

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GL + G    A++ F +M +      V  Y  ++ G C  N  +EA  L  ++    V
Sbjct: 658 LAGLFRAGRTVAARKKFHEMIESGTTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNV 717

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +  +   N +++ + K  + +EA  L   +   G+ PN ST+  ++      G V  A  
Sbjct: 718 KFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINLLKDGAVEDANN 777

Query: 380 LFVSMESMG 388
           +F SME  G
Sbjct: 778 MFSSMEKSG 786



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 12/284 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+N     P +  FN +   L K         +F  +   G  PD+ T+  LI+ +C +G
Sbjct: 536 MINKGIPRPDIVFFNSVINSLCKDGRVMDAHDIFDLVTDIGERPDVITFTSLIDGYCLVG 595

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  +       D V +++L+ G     RI +   LF +++  G KPN +TY 
Sbjct: 596 KMDKAFKILDAMEVVGVETDIVTYSTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYG 655

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT---YTTIIDGLCKEGFVDKAK 273
            ++ GL R G T+ A   F EM              TVT   Y  I+ GLC+    D+A 
Sbjct: 656 IMLAGLFRAGRTVAARKKFHEMIESG---------TTVTVSIYGIILGGLCRNNCADEAI 706

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            LF ++   N+   +   N++I+         EA  L   +   G+ P+  T+ V++  L
Sbjct: 707 ILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            K+G +++A+ +   M   G+ P +   + ++      G +  A
Sbjct: 767 LKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 65/288 (22%), Positives = 117/288 (40%), Gaps = 32/288 (11%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  IFD + ++   P  +T  +L+ G CL      D    +   +   G+  D+ TY+ 
Sbjct: 564 DAHDIFDLVTDIGERPDVITFTSLIDGYCL--VGKMDKAFKILDAMEVVGVETDIVTYST 621

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ + K GR++ G  +   + R    P+ V +  ++ GL    R + A   F ++   G
Sbjct: 622 LLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESG 681

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK----------------- 250
               V  Y  ++ GLCR      A+ LF+++   N KF +                    
Sbjct: 682 TTVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAK 741

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN  TY  +I  L K+G V+ A  +F  M+   I P     N +I   
Sbjct: 742 ELFATISASGLLPNESTYGVMIINLLKDGAVEDANNMFSSMEKSGIVPGSRLLNRIIRML 801

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
               +  +A   L ++  + +  +  T ++++    + GK  E  +LL
Sbjct: 802 LEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYHEDMKLL 849


>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
 gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
          Length = 577

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 156/288 (54%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  +   LAK K  +  ++L +++ + G  P + TYN L+N  CKMGR+     +L +I
Sbjct: 269 TYTAIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKI 328

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           + +  TPD V +TSLI GL  E R  EA  LF ++   G   + + Y+ LI  L +TG  
Sbjct: 329 VDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKI 388

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A ++++ M +        C P+ VT +T+IDGL K G +  A  +F  M+ + + P+ 
Sbjct: 389 PQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNE 442

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y++LIHG C A   + A  +L +M      PD +T+N+++D LCK+G ++ A    + 
Sbjct: 443 VVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDE 502

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  G  P+  T++ L+ GFC  G  + A  +F  M S  C   V +Y
Sbjct: 503 MLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTY 550



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 107/338 (31%), Positives = 159/338 (47%), Gaps = 65/338 (19%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           +  ++L +++ + G  P + TYN L+N  CKMGR+     +L +I+ +  TPD V +TSL
Sbjct: 3   EEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSL 62

Query: 184 IKGLCAESRIMEAAALFTKLK-----------------------------------AFGC 208
           I GL  E R  EA  LF ++                                    + GC
Sbjct: 63  IDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 122

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVV------------------- 248
            P+V+T ST+I+GL + G    A+ +F+ M A G     VV                   
Sbjct: 123 VPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALE 182

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C P+T+TY  +IDGLCK G V+ A+  F +M +    PDV TYN LI GFC
Sbjct: 183 MLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFC 242

Query: 300 YANDWNEA-NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
            A + + A + L  E    G   D+ T+  I+D L KN K++EA  L+E +   G  P  
Sbjct: 243 KAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGCTPTI 302

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +T++ L++G C  GR+  A +L   +   GC   V +Y
Sbjct: 303 ATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTY 340



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 5/285 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + + +   L+K       + +FK + + GL P+   Y+ LI+  CK  ++     +
Sbjct: 124 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 183

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ ++  TPD + +  LI GLC    +  A A F ++   GCKP+V TY+ LI+G C+
Sbjct: 184 LAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCK 243

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+T  A +   +    NG     C  +  TYT I+D L K   +++A  L  ++     
Sbjct: 244 AGNTDAASHSLAQETTING-----CTIDIHTYTAIVDWLAKNKKIEEAVALMEKITANGC 298

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P + TYN+L++G C      EA  LL +++D G  PDVVT+  ++D L K  +  EA +
Sbjct: 299 TPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYK 358

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L + M LRG+  +T  ++ L+     TG++  A  ++ +M S GC
Sbjct: 359 LFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGC 403



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/335 (28%), Positives = 147/335 (43%), Gaps = 42/335 (12%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P    ++ L   L K +  D  L +  ++      PD  TYN+LI+  CK G 
Sbjct: 152 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGD 211

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-------------------------- 191
           V         +L +   PD   +  LI G C                             
Sbjct: 212 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYT 271

Query: 192 ----------RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
                     +I EA AL  K+ A GC P + TY+ L+NGLC+ G    A++L  ++ + 
Sbjct: 272 AIVDWLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD- 330

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
           NG     C P+ VTYT++IDGL KE    +A +LF +M  + +  D V Y +LI      
Sbjct: 331 NG-----CTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQT 385

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
               +A+ +   M   G  PDVVT + ++D L K G++  A R+ + M  RG+ PN   +
Sbjct: 386 GKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVY 445

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           S L+ G C   +++ A E+   M+   C     +Y
Sbjct: 446 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 480



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 130/270 (48%), Gaps = 30/270 (11%)

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++     ++ +I  +  TP    + +L+ GLC   R+ EA  L  K+   GC P+V+TY+
Sbjct: 1   KIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYT 60

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK-------------------------- 250
           +LI+GL +   +  A  LF+EMA        VC                           
Sbjct: 61  SLIDGLGKEKRSFEAYKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSH 120

Query: 251 ---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+ VT +T+IDGL K G +  A  +F  M+ + + P+ V Y++LIHG C A   + A
Sbjct: 121 GCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCA 180

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L +M      PD +T+NV++D LCK+G ++ A    + M+  G  P+  T++ L+ G
Sbjct: 181 LEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISG 240

Query: 368 FCLTGRVNHAKELFVSMESM-GCKHTVFSY 396
           FC  G  + A        ++ GC   + +Y
Sbjct: 241 FCKAGNTDAASHSLAQETTINGCTIDIHTY 270



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 59/141 (41%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P    ++ L   L K +  D  L +  ++      PD  TYNILI+  CK G 
Sbjct: 433 MEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGD 492

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V         +L +   PD   +  LI G C       A  +F  + +  C  NV+TY  
Sbjct: 493 VEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSANVVTYGA 552

Query: 218 LINGLCRTGHTIVALNLFEEM 238
           LI+GLC+      A   F+ M
Sbjct: 553 LISGLCKRRQLTKASLYFQHM 573


>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
          Length = 768

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 162/321 (50%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K            R+ + G  PD +TYN +I+ +CK G +     +
Sbjct: 278 PDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQEATEL 337

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   +   F PD V + SLI GLCAE  I  A  LF + +A   KP+++ Y++L+ GLCR
Sbjct: 338 LKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCR 397

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G  + AL +  EM                NG  K G +                P+  T
Sbjct: 398 QGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 457

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+IDG CK   +D A +L  +M    I PDV+TYNS+++G C A    E N    EM+
Sbjct: 458 FNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMI 517

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G +P+ +T+N++++  CK  +++EAS ++  M   G+ P+  +F+TL+ GFC  G ++
Sbjct: 518 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLD 577

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF  ++  G   T  ++
Sbjct: 578 GAYLLFQKLDEKGYSATADTF 598



 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 172/304 (56%), Gaps = 8/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML  R   P + +FN +   L +        +L  ++   G+  + +T NI I   
Sbjct: 198 LFDEMLG-RDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKFTCNIWIRGL 256

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ GR+     ++ R + +   PD V + +L++GLC +S++ EAA    ++   GC P+ 
Sbjct: 257 CEDGRLEEAVALVER-MGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDD 315

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+T+I+G C++G    A  L ++        G V  P+ VTY ++I+GLC EG +++A
Sbjct: 316 FTYNTIIDGYCKSGMLQEATELLKDAVFK----GFV--PDRVTYCSLINGLCAEGDIERA 369

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            ELF + + K++ PD+V YNSL+ G C       A  ++ EM+++G  PD+ T+N+I++ 
Sbjct: 370 LELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIING 429

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK G + +A+ ++   I++G  P+  TF+TL+DG+C   +++ A +L   M + G    
Sbjct: 430 LCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPD 489

Query: 393 VFSY 396
           V +Y
Sbjct: 490 VITY 493



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L +       L +   +   G  PD++TYNI+IN  CKMG +S   VV
Sbjct: 383 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVV 442

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +   +   + PD   F +LI G C   ++  A  L  ++  +G  P+VITY++++NGLC+
Sbjct: 443 MNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCK 502

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G        FEEM          C+PN +TY  +I+  CK   +++A  + ++M    +
Sbjct: 503 AGKAKEVNETFEEMILKG------CRPNAITYNILIENFCKINQLEEASGVIVRMCQDGL 556

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD V++N+LIHGFC   D + A  L  ++ ++G      TFN+++        M  A +
Sbjct: 557 VPDAVSFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 616

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   MI +G  P+  T+  L+DG C    V+ A      M S G
Sbjct: 617 IFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKG 660



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 7/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N+    L +    +  ++L +R+ +  + PD+ TYN L+   CK  +V      LGR++ 
Sbjct: 250 NIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMN 308

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD   + ++I G C    + EA  L       G  P+ +TY +LINGLC  G    
Sbjct: 309 QGCIPDDFTYNTIIDGYCKSGMLQEATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIER 368

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF E    +       KP+ V Y +++ GLC++G +  A ++  +M ++  +PD+ T
Sbjct: 369 ALELFNEAQAKD------LKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEEGCHPDIWT 422

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN +I+G C   + ++A  ++ + + +G  PDV TFN ++D  CK  K+D A +L+E M 
Sbjct: 423 YNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCKRLKLDSALQLVERMW 482

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+ P+  T++++++G C  G+     E F  M   GC+    +Y
Sbjct: 483 TYGIAPDVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAITY 528



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L   L      +  L LF    +  L PDL  YN L+   C+ G + H   V
Sbjct: 348 PDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQV 407

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++     PD   +  +I GLC    I +AA +       G  P+V T++TLI+G C+
Sbjct: 408 MNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYCK 467

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L E M      +G+   P+ +TY ++++GLCK G   +  E F +M  K  
Sbjct: 468 RLKLDSALQLVERMWT----YGIA--PDVITYNSVLNGLCKAGKAKEVNETFEEMILKGC 521

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TYN LI  FC  N   EA+ +++ M   G+ PD V+FN ++   C+NG +D A  
Sbjct: 522 RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYL 581

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + +  +G +    TF+ L+  +     +  A+++F  M S G K  +++Y
Sbjct: 582 LFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTY 633



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 151/295 (51%), Gaps = 11/295 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++N +   L    ++D    ++ R+ + G+ PD  T+ + +  FC  GR  H  +
Sbjct: 103 PPAAPAYNAIMDALVNAAYHDQAHKVYVRMLAAGVAPDARTHTVRLKSFCLTGR-PHVAL 161

Query: 164 VLGRIL--RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            L R L  R C    A A+ ++++GL A      A  LF ++      P+V T++ +++ 
Sbjct: 162 RLLRSLSERGCDAKPA-AYCTVVRGLYAHGHGYNARHLFDEMLGRDVFPDVATFNNVLHA 220

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC+ G  + +  L  ++     K G+    N  T    I GLC++G +++A  L  +M  
Sbjct: 221 LCQKGDVMESGALLAKVL----KRGM--SANKFTCNIWIRGLCEDGRLEEAVALVERM-G 273

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PDVVTYN+L+ G C  +   EA   L  MM+QG  PD  T+N I+D  CK+G + E
Sbjct: 274 AYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGCIPDDFTYNTIIDGYCKSGMLQE 333

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A+ LL+  + +G  P+  T+ +L++G C  G +  A ELF   ++   K  +  Y
Sbjct: 334 ATELLKDAVFKGFVPDRVTYCSLINGLCAEGDIERALELFNEAQAKDLKPDLVVY 388



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 121/252 (48%), Gaps = 7/252 (2%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           Y   I  + + GR+        R+      P A A+ +++  L   +   +A  ++ ++ 
Sbjct: 74  YVASIQAYARAGRLRAAVDAFERMDLFACPPAAPAYNAIMDALVNAAYHDQAHKVYVRML 133

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A G  P+  T++  +   C TG   VAL L   ++         C      Y T++ GL 
Sbjct: 134 AAGVAPDARTHTVRLKSFCLTGRPHVALRLLRSLSERG------CDAKPAAYCTVVRGLY 187

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
             G    A+ LF +M  +++ PDV T+N+++H  C   D  E+  LL +++ +G+  +  
Sbjct: 188 AHGHGYNARHLFDEMLGRDVFPDVATFNNVLHALCQKGDVMESGALLAKVLKRGMSANKF 247

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T N+ +  LC++G+++EA  L+E M    V P+  T++TLM G C   +V  A +    M
Sbjct: 248 TCNIWIRGLCEDGRLEEAVALVERMGAY-VAPDVVTYNTLMRGLCKDSKVQEAAQYLGRM 306

Query: 385 ESMGCKHTVFSY 396
            + GC    F+Y
Sbjct: 307 MNQGCIPDDFTY 318



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/279 (26%), Positives = 129/279 (46%), Gaps = 47/279 (16%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR---VSHG 161
           P + +FN L     K    D+ L L +R+ + G+ PD+ TYN ++N  CK G+   V+  
Sbjct: 453 PDVFTFNTLIDGYCKRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNET 512

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           F  +  IL+ C  P+A+ +  LI+  C  +++ EA+ +  ++   G  P+ ++++TLI+G
Sbjct: 513 FEEM--ILKGC-RPNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHG 569

Query: 222 LCRTGHTIVALNLFEE-------------------------MANGNGKFGVVC----KPN 252
            CR G    A  LF++                         M      FG +     KP+
Sbjct: 570 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 629

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
             TY  ++DGLCK   VD+A     +M  K   P + T+  +++     +  +EA  ++ 
Sbjct: 630 LYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRMLNLLAMNHRVSEAVAIIH 689

Query: 313 EMMDQGVQPDVVTF------------NVIMDELCKNGKM 339
            M+  GV P+VV               ++++EL K G +
Sbjct: 690 IMVRMGVVPEVVDTILSTDKKEIAAPKILVEELMKKGHI 728


>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
          Length = 553

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 12/295 (4%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P   P TS    F  + KTK    V+ +   L  +G  PD+ TYN+LI+ +CK G + + 
Sbjct: 90  PDIIPCTSLIRGFCRIGKTKKATWVMEI---LEQSGAVPDVITYNVLISGYCKSGEIDNA 146

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             VL R+      PD V + ++++ LC   ++ +A  +  +     C P+VITY+ LI  
Sbjct: 147 LQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEA 203

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+      A+ L +EM N   K      P+ VTY  +I+G+CKEG +D+A +    M  
Sbjct: 204 TCKESGVGQAMKLLDEMRNKGSK------PDVVTYNVLINGICKEGRLDEAIKFLNNMPS 257

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+V+T+N ++   C    W +A  LL +M+ +G  P VVTFN++++ LC+ G +  
Sbjct: 258 YGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGR 317

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  +LE M + G  PN+ +++ L+ GFC   +++ A E    M S GC   + +Y
Sbjct: 318 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTY 372



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/300 (31%), Positives = 156/300 (52%), Gaps = 9/300 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +L    + P + ++N+L     K+   D  L +  R+N   + PD+ TYN ++   C  G
Sbjct: 117 ILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDRMN---VAPDVVTYNTILRTLCDSG 173

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++     VL R L+    PD + +T LI+  C ES + +A  L  +++  G KP+V+TY+
Sbjct: 174 KLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYN 233

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LING+C+ G    A+     M +    +G  C+PN +T+  I+  +C  G    A++L 
Sbjct: 234 VLINGICKEGRLDEAIKFLNNMPS----YG--CQPNVITHNIILRSMCSTGRWMDAEKLL 287

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M  K  +P VVT+N LI+  C       A  +L +M   G  P+ +++N ++   CK 
Sbjct: 288 SDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKE 347

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            KMD A   L++M+ RG  P+  T++TL+   C  G+V+ A E+   + S GC   + +Y
Sbjct: 348 KKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITY 407



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 164/328 (50%), Gaps = 15/328 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            ++  CK SG G        +A  + D M N + S P + ++N+L   + K    D  + 
Sbjct: 200 LIEATCKESGVG--------QAMKLLDEMRN-KGSKPDVVTYNVLINGICKEGRLDEAIK 250

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
               + S G  P++ T+NI++   C  GR      +L  +LR   +P  V F  LI  LC
Sbjct: 251 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 310

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +  +  A  +  K+   GC PN ++Y+ L++G C+      A+   + M +        
Sbjct: 311 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG------ 364

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ VTY T++  LCK+G VD A E+  Q+  K  +P ++TYN++I G         A 
Sbjct: 365 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI 424

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  +G++PD++T++ ++  L + GK+DEA +    +   G+ PN  T++++M G 
Sbjct: 425 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 484

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C + + + A +    M S  CK T  +Y
Sbjct: 485 CKSRQTDRAIDFLAYMISKRCKPTEATY 512



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 252 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 311

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     +L ++     TP+++++  L+ G C E ++  A      + + GC P+++T
Sbjct: 312 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 371

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TL+  LC+ G   VA+ +  ++++        C P  +TY T+IDGL K G  ++A +
Sbjct: 372 YNTLLTALCKDGKVDVAVEILNQLSSKG------CSPVLITYNTVIDGLSKVGKTERAIK 425

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K + PD++TY+SL+ G       +EA     ++   G++P+ +T+N IM  LC
Sbjct: 426 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 485

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           K+ + D A   L  MI +   P  +T++ L++G    G    A +L   + S G
Sbjct: 486 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 539



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 86/270 (31%), Positives = 136/270 (50%), Gaps = 12/270 (4%)

Query: 130 FKRLNST---GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           FK L S    G  PD+     LI  FC++G+      V+  + +S   PD + +  LI G
Sbjct: 77  FKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISG 136

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    I  A  +  ++      P+V+TY+T++  LC +G    A+ + +          
Sbjct: 137 YCKSGEIDNALQVLDRMNV---APDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKE---- 189

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             C P+ +TYT +I+  CKE  V +A +L  +M++K   PDVVTYN LI+G C     +E
Sbjct: 190 --CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDE 247

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   L  M   G QP+V+T N+I+  +C  G+  +A +LL  M+ +G +P+  TF+ L++
Sbjct: 248 AIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILIN 307

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             C  G +  A ++   M   GC     SY
Sbjct: 308 FLCRQGLLGRAIDILEKMPMHGCTPNSLSY 337



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 83/241 (34%), Positives = 127/241 (52%), Gaps = 9/241 (3%)

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G +  GF  L  ++     PD +  TSLI+G C   +  +A  +   L+  G  P+VITY
Sbjct: 71  GELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITY 130

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           + LI+G C++G    AL + + M            P+ VTY TI+  LC  G + +A E+
Sbjct: 131 NVLISGYCKSGEIDNALQVLDRMN---------VAPDVVTYNTILRTLCDSGKLKQAMEV 181

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +   K   PDV+TY  LI   C  +   +A  LL EM ++G +PDVVT+NV+++ +CK
Sbjct: 182 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 241

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            G++DEA + L  M   G  PN  T + ++   C TGR   A++L   M   GC  +V +
Sbjct: 242 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 301

Query: 396 Y 396
           +
Sbjct: 302 F 302



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 136/256 (53%), Gaps = 8/256 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 297 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 356

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V + +L+  LC + ++  A  +  +L + GC P +ITY+T+I+GL 
Sbjct: 357 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 415

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L +EM           KP+ +TY++++ GL +EG VD+A + F  ++   
Sbjct: 416 KVGKTERAIKLLDEMRRKG------LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 469

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ +TYNS++ G C +   + A   L  M+ +  +P   T+ ++++ +   G   EA 
Sbjct: 470 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 529

Query: 344 RLLELMILRGVNPNTS 359
            LL  +  RG+   +S
Sbjct: 530 DLLNELCSRGLVKKSS 545



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L + G ++   +    M  +   PD++   SLI GFC      +A  ++  +   G  PD
Sbjct: 67  LVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPD 126

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V+T+NV++   CK+G++D A ++L+ M    V P+  T++T++   C +G++  A E+  
Sbjct: 127 VITYNVLISGYCKSGEIDNALQVLDRM---NVAPDVVTYNTILRTLCDSGKLKQAMEVLD 183

Query: 383 SMESMGCKHTVFSY 396
                 C   V +Y
Sbjct: 184 RQLQKECYPDVITY 197


>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
          Length = 589

 Score =  179 bits (454), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 118/349 (33%), Positives = 178/349 (51%), Gaps = 22/349 (6%)

Query: 52  LKESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSP---PPL 107
           L E L++ +  D A+    L E C++    D        A  IFD M    PS    P L
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMD--------AERIFDEM----PSQGVVPDL 237

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            SF+ L G L+K    D  L  F+ + + GL PD   Y ILI  FC+ G +S    V   
Sbjct: 238 VSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDE 297

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L      D V + +++ GLC E  + EA  LFT++   G  P+  T++TLING  + G+
Sbjct: 298 MLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGN 357

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ LFE M   N       KP+ VTY T+IDG CK   ++K  EL+  M  + I P+
Sbjct: 358 MNKAVTLFEMMIQRN------LKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRIYPN 411

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            ++Y  LI+G+C     +EA  L  EM+++G +  ++T N I+   C+ G   +A   L 
Sbjct: 412 HISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLS 471

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+L+G+ P+  T++TL++GF     ++ A  L   ME+ G    V +Y
Sbjct: 472 NMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITY 520



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++   L K +  +   S    +   G+FPD+ TYN LIN +C+ G +   F ++  +
Sbjct: 99  TLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQGLLEEAFELMDSM 158

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P    + ++I GLC   + + A  +  ++   G  P+  TY+ L+   CR  + 
Sbjct: 159 SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNILLVECCRNDNM 218

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A  +F+EM +     GVV  P+ V+++ +I  L K G +D+A + F  MK+  + PD 
Sbjct: 219 MDAERIFDEMPSQ----GVV--PDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGLAPDN 272

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  LI GFC     +EA  +  EM++QG   DVVT+N I++ LCK   + EA  L   
Sbjct: 273 VIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTYNTILNGLCKEKMLSEADELFTE 332

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  RGV P+  TF+TL++G+   G +N A  LF  M     K  V +Y
Sbjct: 333 MTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTY 380



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 148/282 (52%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +    +    L   ++  GL P ++TYN +IN  CK G+      V
Sbjct: 130 PDVVTYNTLINAYCRQGLLEEAFELMDSMSGKGLKPCVFTYNAIINGLCKTGKYLRAKGV 189

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L+   +PD   +  L+   C    +M+A  +F ++ + G  P+++++S LI  L +
Sbjct: 190 LDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSK 249

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL  F +M N          P+ V YT +I G C+ G + +A ++  +M ++  
Sbjct: 250 NGCLDQALKYFRDMKNAG------LAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGC 303

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DVVTYN++++G C     +EA+ L  EM ++GV PD  TF  +++   K+G M++A  
Sbjct: 304 VLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVT 363

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           L E+MI R + P+  T++TL+DGFC    +    EL+  M S
Sbjct: 364 LFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMIS 405



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/307 (30%), Positives = 158/307 (51%), Gaps = 7/307 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + D M + +   P + ++N +   L KT  Y     +   +   G+ PD  TYNIL
Sbjct: 150 EAFELMDSM-SGKGLKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMSPDTATYNIL 208

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+   +     +   +      PD V+F++LI  L     + +A   F  +K  G 
Sbjct: 209 LVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKYFRDMKNAGL 268

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ + Y+ LI G CR G    AL + +EM          C  + VTY TI++GLCKE  
Sbjct: 269 APDNVIYTILIGGFCRNGVMSEALKVRDEMLEQG------CVLDVVTYNTILNGLCKEKM 322

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A ELF +M ++ + PD  T+ +LI+G+    + N+A  L   M+ + ++PDVVT+N 
Sbjct: 323 LSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNT 382

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK  +M++ + L   MI R + PN  ++  L++G+C  G V+ A  L+  M   G
Sbjct: 383 LIDGFCKGSEMEKVNELWNDMISRRIYPNHISYGILINGYCNMGCVSEAFRLWDEMVEKG 442

Query: 389 CKHTVFS 395
            + T+ +
Sbjct: 443 FEATIIT 449



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/291 (30%), Positives = 141/291 (48%), Gaps = 7/291 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           PL  F+LL     + +        F+ L S GL   +   N L+    K+G V   + + 
Sbjct: 27  PLV-FDLLVRTYVQARKLREGCEAFRVLKSKGLCVSINACNSLLGGLVKVGWVDLAWEIY 85

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             ++RS    +      +I  LC   +I    +  + ++  G  P+V+TY+TLIN  CR 
Sbjct: 86  QEVVRSGVQVNVYTLNIMINALCKNQKIENTKSFLSDMEEKGVFPDVVTYNTLINAYCRQ 145

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  L + M+ G G      KP   TY  II+GLCK G   +AK +  +M    ++
Sbjct: 146 GLLEEAFELMDSMS-GKG-----LKPCVFTYNAIINGLCKTGKYLRAKGVLDEMLKIGMS 199

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  TYN L+   C  ++  +A  +  EM  QGV PD+V+F+ ++  L KNG +D+A + 
Sbjct: 200 PDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLSKNGCLDQALKY 259

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M   G+ P+   ++ L+ GFC  G ++ A ++   M   GC   V +Y
Sbjct: 260 FRDMKNAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDVVTY 310



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 140/298 (46%), Gaps = 30/298 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML  +     + ++N +   L K K       LF  +   G+FPD YT+  L
Sbjct: 290 EALKVRDEMLE-QGCVLDVVTYNTILNGLCKEKMLSEADELFTEMTERGVFPDFYTFTTL 348

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN + K G ++    +   +++    PD V + +LI G C  S + +   L+  + +   
Sbjct: 349 INGYSKDGNMNKAVTLFEMMIQRNLKPDVVTYNTLIDGFCKGSEMEKVNELWNDMISRRI 408

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            PN I+Y  LING C  G    A  L++EM                 G  + G   K   
Sbjct: 409 YPNHISYGILINGYCNMGCVSEAFRLWDEMVEKGFEATIITCNTIVKGYCRAGNAVKADE 468

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY T+I+G  KE  +D+A  L  +M++  + PDV+TYN +++GF 
Sbjct: 469 FLSNMLLKGIVPDGITYNTLINGFIKEENMDRAFALVNKMENSGLLPDVITYNVILNGFS 528

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                 EA  ++++M+++GV PD  T+  +++       + EA R+ + M+ RG  P+
Sbjct: 529 RQGRMQEAELIMLKMIERGVNPDRSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVPD 586


>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 533

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K K  D      + +   GL P+L T+N++IN  C+ GR+     V
Sbjct: 16  PNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIINGLCRDGRLKETSEV 75

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + R  + PD V + +L+ G C E    +A  L  ++   G  PNV+TY++LIN +C+
Sbjct: 76  LVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCK 135

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+  F++M         +C PN  TYTTII+G  ++G +D+A  +  +M     
Sbjct: 136 AGNLNRAMEFFDQM-----HVRGLC-PNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGF 189

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +VTYN+LI+G C      EA  LL +M+ +GV PDVV+++ I+    +N ++D A +
Sbjct: 190 IPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQ 249

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   MI + V P+  T+S+L+ G C   R+  A ++F  M ++      F+Y
Sbjct: 250 MKVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTY 301



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 145/258 (56%), Gaps = 6/258 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L  FK +   G  P++ TYN +I+ +CK+ R    F  L  +      P+ + F  +I G
Sbjct: 3   LRFFKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITFNMIING 62

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC + R+ E + +  ++   G  P+ +TY+TL+NG C+ G+   AL L  EM   NG   
Sbjct: 63  LCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR-NG--- 118

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               PN VTYT++I+ +CK G +++A E F QM  + + P+  TY ++I+GF      +E
Sbjct: 119 --LSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDE 176

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +L EM   G  P +VT+N +++  C  G+M+EA  LL+ M+ +GV P+  ++ST++ 
Sbjct: 177 AYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIIS 236

Query: 367 GFCLTGRVNHAKELFVSM 384
           GF     ++ A ++ V M
Sbjct: 237 GFARNQELDRAFQMKVEM 254



 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 151/295 (51%), Gaps = 21/295 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K  + +  +  F +++  GL P+  TY  +IN F + G +   + V
Sbjct: 121 PNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYRV 180

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + RS F P  V + +LI G C   R+ EA  L   +   G  P+V++YST+I+G  R
Sbjct: 181 LNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFAR 240

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +  EM       G    P+ VTY+++I GLC++  + +A ++F +M    +
Sbjct: 241 NQELDRAFQMKVEM------IGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKL 294

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY +LI+ +C   D N+A  L  EM+ +G  PD VT+NV+++ L K  +  EA R
Sbjct: 295 PPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARR 354

Query: 345 LLELMILRGVNPNTSTFSTLMD---------------GFCLTGRVNHAKELFVSM 384
           LL  +      P+  T++TL++               GFC+ G ++ A ++F SM
Sbjct: 355 LLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESM 409



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF     M  ++   P L +FN++   L +         +   ++  G  PD  TYN 
Sbjct: 35  DEAFGFLRSM-GLKGLEPNLITFNMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNT 93

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK G      V+   ++R+  +P+ V +TSLI  +C    +  A   F ++   G
Sbjct: 94  LVNGYCKEGNFHQALVLHAEMVRNGLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRG 153

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN  TY+T+ING  + G    A  +  EM     + G +  P+ VTY  +I+G C  G
Sbjct: 154 LCPNERTYTTIINGFAQQGLLDEAYRVLNEMT----RSGFI--PSIVTYNALINGHCVLG 207

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L   M  K + PDVV+Y+++I GF    + + A  + +EM+ + V PD VT++
Sbjct: 208 RMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKSVLPDAVTYS 267

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC+  ++ EA  + + M+   + P+  T++TL++ +C  G +N A  L   M   
Sbjct: 268 SLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQK 327

Query: 388 G 388
           G
Sbjct: 328 G 328



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 145/312 (46%), Gaps = 22/312 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A   FD M ++R   P   ++  +    A+    D    +   +  +G  P + TYN 
Sbjct: 140 NRAMEFFDQM-HVRGLCPNERTYTTIINGFAQQGLLDEAYRVLNEMTRSGFIPSIVTYNA 198

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C +GR+     +L  ++     PD V+++++I G      +  A  +  ++    
Sbjct: 199 LINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQMKVEMIGKS 258

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TYS+LI GLC       A ++F+EM        +   P+  TYTT+I+  CKEG
Sbjct: 259 VLPDAVTYSSLIQGLCEQRRLTEACDMFQEM------LTIKLPPDEFTYTTLINAYCKEG 312

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++KA  L  +M  K   PD VTYN LI+G        EA  LL+++      P  VT+N
Sbjct: 313 DLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYN 372

Query: 328 VIMDE---------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            +++                 C  G MDEA ++ E MI +   PN + ++ ++ G C  G
Sbjct: 373 TLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVIIHGHCRIG 432

Query: 373 RVNHAKELFVSM 384
            V  A +L+  M
Sbjct: 433 NVLKAYKLYKEM 444



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 117/197 (59%), Gaps = 6/197 (3%)

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F +++  GC PNV+TY+T+I+G C+   T  A      M    G  G+  +PN +T+  I
Sbjct: 6   FKEMERNGCLPNVVTYNTMIDGYCKLKRTDEAFGFLRSM----GLKGL--EPNLITFNMI 59

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLC++G + +  E+ ++M  K   PD VTYN+L++G+C   ++++A  L  EM+  G+
Sbjct: 60  INGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGL 119

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT+  +++ +CK G ++ A    + M +RG+ PN  T++T+++GF   G ++ A  
Sbjct: 120 SPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCPNERTYTTIINGFAQQGLLDEAYR 179

Query: 380 LFVSMESMGCKHTVFSY 396
           +   M   G   ++ +Y
Sbjct: 180 VLNEMTRSGFIPSIVTY 196



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 21/283 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L          +  + L + +   G+ PD+ +Y+ +I+ F +   +   F +
Sbjct: 191 PSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFARNQELDRAFQM 250

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PDAV ++SLI+GLC + R+ EA  +F ++      P+  TY+TLIN  C+
Sbjct: 251 KVEMIGKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCK 310

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL+L +EM     + G +  P+ VTY  +I+GL K+    +A+ L L++   + 
Sbjct: 311 EGDLNKALHLHDEMI----QKGFL--PDAVTYNVLINGLNKQARSKEARRLLLKLFYDDS 364

Query: 285 NPDVVTYNSLIH---------------GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            P  VTYN+LI                GFC     +EA+ +   M+++  +P+   +NVI
Sbjct: 365 IPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVFESMINKNHKPNEAIYNVI 424

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           +   C+ G + +A +L + M+     P+T T   L+      G
Sbjct: 425 IHGHCRIGNVLKAYKLYKEMVHVDFVPHTVTVLALVKALFTEG 467



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 119/271 (43%), Gaps = 21/271 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +++ L   L + +       +F+ + +  L PD +TY  LIN +CK G ++    +
Sbjct: 261 PDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDEFTYTTLINAYCKEGDLNKALHL 320

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN---- 220
              +++  F PDAV +  LI GL  ++R  EA  L  KL      P+ +TY+TLI     
Sbjct: 321 HDEMIQKGFLPDAVTYNVLINGLNKQARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCN 380

Query: 221 -----------GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
                      G C  G    A  +FE M N N K      PN   Y  II G C+ G V
Sbjct: 381 IEFKSAVALVKGFCMKGLMDEADQVFESMINKNHK------PNEAIYNVIIHGHCRIGNV 434

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA +L+ +M   +  P  VT  +L+          E N ++ +++      D     V+
Sbjct: 435 LKAYKLYKEMVHVDFVPHTVTVLALVKALFTEGMDGELNEVIGDILRSCKLTDAELSKVL 494

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTST 360
           ++   K G MD    LL  M   G+ P+T T
Sbjct: 495 VEINQKEGNMDMVFNLLTEMAKDGLIPSTGT 525



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/256 (25%), Positives = 106/256 (41%), Gaps = 30/256 (11%)

Query: 36  SSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFD 95
           S  ++N+  D     K++   +  + D  +    ++  C+   Q  +T     EA  +F 
Sbjct: 236 SGFARNQELDRAFQMKVEMIGKSVLPDAVTYSSLIQGLCE---QRRLT-----EACDMFQ 287

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
            ML ++  PP   ++  L     K    +  L L   +   G  PD  TYN+LIN   K 
Sbjct: 288 EMLTIK-LPPDEFTYTTLINAYCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGLNKQ 346

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLI---------------KGLCAESRIMEAAALF 200
            R      +L ++      P AV + +LI               KG C +  + EA  +F
Sbjct: 347 ARSKEARRLLLKLFYDDSIPSAVTYNTLIENCCNIEFKSAVALVKGFCMKGLMDEADQVF 406

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +     KPN   Y+ +I+G CR G+ + A  L++EM +      V   P+TVT   ++
Sbjct: 407 ESMINKNHKPNEAIYNVIIHGHCRIGNVLKAYKLYKEMVH------VDFVPHTVTVLALV 460

Query: 261 DGLCKEGFVDKAKELF 276
             L  EG   +  E+ 
Sbjct: 461 KALFTEGMDGELNEVI 476


>gi|449488099|ref|XP_004157939.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 158/286 (55%), Gaps = 7/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN+L   L +    D     F+ + + G FPD+ +YN LIN FC++  +S G  +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 165 LGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L   +L    +PD + +TS+I G C    +  A+ LF ++ + G KPN  T++ LI+G  
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+   A+ ++E+M        + C P+ VT+T++IDG C+EG V++  +L+ +MK +N
Sbjct: 332 KVGNMRSAMVMYEKM------LLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+V TY  LI+  C  N   EA   L  +    V P    +N ++D  CK GK+DEA+
Sbjct: 386 LSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEAN 445

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            ++  M  +   P+  TF+ L+ G C+ GR+  A   F  M  + C
Sbjct: 446 FIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINC 491



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 5/282 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +   LL    A+    D+  +    ++  G+    + YN L+N   K   V    ++
Sbjct: 142 PDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLL 201

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               L   F PD  +F  LI+GLC    I +A   F  +  FGC P++++Y+TLING CR
Sbjct: 202 FREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCR 261

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                   +L +E     G       P+ +TYT+II G CK G +  A ELF +M    I
Sbjct: 262 VNEISKGHDLLKEDMLIKG-----VSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGI 316

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  T+N LI GF    +   A  +  +M+  G  PDVVTF  ++D  C+ G++++  +
Sbjct: 317 KPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLK 376

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           L E M +R ++PN  T++ L++  C   R+  A+     ++S
Sbjct: 377 LWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKS 418



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 149/289 (51%), Gaps = 7/289 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++LL   L K    D+   +F  + S G+ PD     +L++ + +MG++      L  +
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                      + +L+  L  ++ + EA  LF +       P+V +++ LI GLCR G  
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ-MKDKNINPD 287
             A   F+ M N    FG  C P+ V+Y T+I+G C+   + K  +L  + M  K ++PD
Sbjct: 231 DKAFEFFQNMGN----FG--CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+TY S+I G+C   D   A+ L  EM+  G++P+  TFNV++D   K G M  A  + E
Sbjct: 285 VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYE 344

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+L G  P+  TF++L+DG+C  G VN   +L+  M+       V++Y
Sbjct: 345 KMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 9/283 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L K    D  + LF+        PD+Y++NILI   C++G +   F     + 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241

Query: 170 R-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGH 227
              CF PD V++ +LI G C  + I +   L  + +   G  P+VITY+++I+G C+ G 
Sbjct: 242 NFGCF-PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGD 300

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LF+EM +         KPN  T+  +IDG  K G +  A  ++ +M      PD
Sbjct: 301 MKAASELFDEMVSSG------IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVT+ SLI G+C   + N+   L  EM  + + P+V T+ V+++ LCK  ++ EA   L 
Sbjct: 355 VVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLR 414

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +    V P    ++ ++DGFC  G+V+ A  +   M+   C+
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCR 457



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+   +++ M  +R   P + ++ +L   L K        +  + L S+ + P  + YN 
Sbjct: 372 NQGLKLWEEM-KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNP 430

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G+V     ++  +      PD + FT LI G C + R++EA + F K+    
Sbjct: 431 VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEIN 490

Query: 208 CKPNVITYSTLINGLCRTG 226
           C P+ IT ++LI+ L + G
Sbjct: 491 CVPDEITINSLISCLLKAG 509


>gi|449446624|ref|XP_004141071.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Cucumis sativus]
          Length = 548

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/286 (33%), Positives = 158/286 (55%), Gaps = 7/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN+L   L +    D     F+ + + G FPD+ +YN LIN FC++  +S G  +
Sbjct: 212 PDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCRVNEISKGHDL 271

Query: 165 LGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L   +L    +PD + +TS+I G C    +  A+ LF ++ + G KPN  T++ LI+G  
Sbjct: 272 LKEDMLIKGVSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFG 331

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+   A+ ++E+M        + C P+ VT+T++IDG C+EG V++  +L+ +MK +N
Sbjct: 332 KVGNMRSAMVMYEKM------LLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRN 385

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+V TY  LI+  C  N   EA   L  +    V P    +N ++D  CK GK+DEA+
Sbjct: 386 LSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNPVIDGFCKAGKVDEAN 445

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            ++  M  +   P+  TF+ L+ G C+ GR+  A   F  M  + C
Sbjct: 446 FIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEINC 491



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 139/282 (49%), Gaps = 5/282 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +   LL    A+    D+  +    ++  G+    + YN L+N   K   V    ++
Sbjct: 142 PDSSILELLVSSYARMGKLDSAKNFLNEVHCYGIKVSPFVYNNLLNMLVKQNLVDEAVLL 201

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               L   F PD  +F  LI+GLC    I +A   F  +  FGC P++++Y+TLING CR
Sbjct: 202 FREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMGNFGCFPDIVSYNTLINGFCR 261

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                   +L +E     G       P+ +TYT+II G CK G +  A ELF +M    I
Sbjct: 262 VNEISKGHDLLKEDMLIKG-----VSPDVITYTSIISGYCKLGDMKAASELFDEMVSSGI 316

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  T+N LI GF    +   A  +  +M+  G  PDVVTF  ++D  C+ G++++  +
Sbjct: 317 KPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPDVVTFTSLIDGYCREGEVNQGLK 376

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           L E M +R ++PN  T++ L++  C   R+  A+     ++S
Sbjct: 377 LWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKS 418



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 149/289 (51%), Gaps = 7/289 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++LL   L K    D+   +F  + S G+ PD     +L++ + +MG++      L  +
Sbjct: 111 TYDLLMRNLCKVGLNDSAKIVFDCMRSDGILPDSSILELLVSSYARMGKLDSAKNFLNEV 170

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                      + +L+  L  ++ + EA  LF +       P+V +++ LI GLCR G  
Sbjct: 171 HCYGIKVSPFVYNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEI 230

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ-MKDKNINPD 287
             A   F+ M N    FG  C P+ V+Y T+I+G C+   + K  +L  + M  K ++PD
Sbjct: 231 DKAFEFFQNMGN----FG--CFPDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPD 284

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+TY S+I G+C   D   A+ L  EM+  G++P+  TFNV++D   K G M  A  + E
Sbjct: 285 VITYTSIISGYCKLGDMKAASELFDEMVSSGIKPNDFTFNVLIDGFGKVGNMRSAMVMYE 344

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+L G  P+  TF++L+DG+C  G VN   +L+  M+       V++Y
Sbjct: 345 KMLLLGCLPDVVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTY 393



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/283 (31%), Positives = 143/283 (50%), Gaps = 9/283 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L K    D  + LF+        PD+Y++NILI   C++G +   F     + 
Sbjct: 182 YNNLLNMLVKQNLVDEAVLLFREHLEPYFVPDVYSFNILIRGLCRIGEIDKAFEFFQNMG 241

Query: 170 R-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGH 227
              CF PD V++ +LI G C  + I +   L  + +   G  P+VITY+++I+G C+ G 
Sbjct: 242 NFGCF-PDIVSYNTLINGFCRVNEISKGHDLLKEDMLIKGVSPDVITYTSIISGYCKLGD 300

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LF+EM +         KPN  T+  +IDG  K G +  A  ++ +M      PD
Sbjct: 301 MKAASELFDEMVSSG------IKPNDFTFNVLIDGFGKVGNMRSAMVMYEKMLLLGCLPD 354

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVT+ SLI G+C   + N+   L  EM  + + P+V T+ V+++ LCK  ++ EA   L 
Sbjct: 355 VVTFTSLIDGYCREGEVNQGLKLWEEMKVRNLSPNVYTYAVLINALCKENRIREARNFLR 414

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +    V P    ++ ++DGFC  G+V+ A  +   M+   C+
Sbjct: 415 HLKSSEVVPKPFIYNPVIDGFCKAGKVDEANFIVAEMQEKKCR 457



 Score = 70.5 bits (171), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 70/139 (50%), Gaps = 1/139 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+   +++ M  +R   P + ++ +L   L K        +  + L S+ + P  + YN 
Sbjct: 372 NQGLKLWEEM-KVRNLSPNVYTYAVLINALCKENRIREARNFLRHLKSSEVVPKPFIYNP 430

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G+V     ++  +      PD + FT LI G C + R++EA + F K+    
Sbjct: 431 VIDGFCKAGKVDEANFIVAEMQEKKCRPDKITFTILIIGNCMKGRMVEAISTFYKMIEIN 490

Query: 208 CKPNVITYSTLINGLCRTG 226
           C P+ IT ++LI+ L + G
Sbjct: 491 CVPDEITINSLISCLLKAG 509


>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
          Length = 582

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/251 (37%), Positives = 141/251 (56%), Gaps = 6/251 (2%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           NI++   C+ G V     ++  + R   +PD V++ +LI GLC   ++ EA  L  +++A
Sbjct: 2   NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            GC PN +T +TL++GLC+ G    A+ L E M     K G     + V Y T+I G C 
Sbjct: 62  AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMK----KKGF--DADVVLYGTLISGFCN 115

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +D+ KELF +M  K I+ +VVTY+ L+HG C    W EAN +L  M + G+ PDVVT
Sbjct: 116 NGNLDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVT 175

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +  ++D LCK+G+   A  LL LM+ +G  P+  T++ L+ G C  G V  A ++   M 
Sbjct: 176 YTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMI 235

Query: 386 SMGCKHTVFSY 396
             G K  V +Y
Sbjct: 236 EKGKKADVVTY 246



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           +   P + S+N L   L K K     + L   + + G FP+  T   L++  CK GR+  
Sbjct: 27  KSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDGRMDE 86

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  + +  F  D V + +LI G C    +     LF ++   G   NV+TYS L++
Sbjct: 87  AMELLEAMKKKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTYSCLVH 146

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLCR G    A  +   MA    + G+   P+ VTYT +IDGLCK+G    A +L   M 
Sbjct: 147 GLCRLGQWKEANTVLNAMA----EHGI--HPDVVTYTGLIDGLCKDGRATHAMDLLNLMV 200

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K   P  VTYN L+ G C      +A  +L  M+++G + DVVT+N +M  LC  GK+D
Sbjct: 201 EKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGLCDKGKVD 260

Query: 341 EASRLLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA +L   M      + PN  TF+ L+ G C  GR+  A ++   M   G    + +Y
Sbjct: 261 EALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTY 318



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/275 (33%), Positives = 145/275 (52%), Gaps = 6/275 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            N++   L +       + L + +    + PD+ +YN LIN  CK  ++     +L  + 
Sbjct: 1   MNIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEME 60

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +   P++V  T+L+ GLC + R+ EA  L   +K  G   +V+ Y TLI+G C  G+  
Sbjct: 61  AAGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGFCNNGNLD 120

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               LF+EM       G     N VTY+ ++ GLC+ G   +A  +   M +  I+PDVV
Sbjct: 121 RGKELFDEM------LGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVV 174

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY  LI G C       A  LL  M+++G +P  VT+NV++  LCK G + +A ++L +M
Sbjct: 175 TYTGLIDGLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMM 234

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           I +G   +  T++TLM G C  G+V+ A +LF SM
Sbjct: 235 IEKGKKADVVTYNTLMKGLCDKGKVDEALKLFNSM 269



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 99/306 (32%), Positives = 154/306 (50%), Gaps = 9/306 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           +FD ML    S   +T   L+ G   L + K  +TVL+    +   G+ PD+ TY  LI+
Sbjct: 125 LFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLN---AMAEHGIHPDVVTYTGLID 181

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             CK GR +H   +L  ++     P  V +  L+ GLC E  +++A  +   +   G K 
Sbjct: 182 GLCKDGRATHAMDLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKA 241

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +V+TY+TL+ GLC  G    AL LF  M +         +PN  T+  +I GLCKEG + 
Sbjct: 242 DVVTYNTLMKGLCDKGKVDEALKLFNSMFDNEN----CLEPNVFTFNMLIGGLCKEGRLT 297

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA ++  +M  K    ++VTYN L+ G   A    EA  L  +++D G  P+  T+++++
Sbjct: 298 KAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILI 357

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           D  CK   ++ A  L   M   G+NP    ++TLM   C  G +  AK LF  M +  C+
Sbjct: 358 DGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNANCE 417

Query: 391 HTVFSY 396
             + S+
Sbjct: 418 PDIISF 423



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 151/302 (50%), Gaps = 9/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYN 146
           +AF I   M+  +     + ++N L   L      D  L LF  +  N   L P+++T+N
Sbjct: 226 DAFKILRMMIE-KGKKADVVTYNTLMKGLCDKGKVDEALKLFNSMFDNENCLEPNVFTFN 284

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI   CK GR++    +  ++++     + V +  L+ G     +I EA  L+ ++   
Sbjct: 285 MLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYNMLLGGCLKAGKIKEAMELWKQVLDL 344

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN  TYS LI+G C+     +A  LF EM            P    Y T++  LCKE
Sbjct: 345 GFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHG------LNPALFDYNTLMASLCKE 398

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++AK LF +M + N  PD++++N++I G   A D+     L ++M++ G++PD +TF
Sbjct: 399 GSLEQAKSLFQEMGNANCEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTF 458

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + +++ L K G++DEA   LE M+  G  P+   + +L+ G    G       L   M +
Sbjct: 459 STLINRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAA 518

Query: 387 MG 388
            G
Sbjct: 519 KG 520



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 139/283 (49%), Gaps = 7/283 (2%)

Query: 88  NEAFCIFDYML-NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +F+ M  N     P + +FN+L G L K       + + +++   G   +L TYN
Sbjct: 260 DEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCGNLVTYN 319

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +L+    K G++     +  ++L   F P++  ++ LI G C    +  A  LF +++  
Sbjct: 320 MLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFCKMRMLNIAKGLFCEMRTH 379

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P +  Y+TL+  LC+ G    A +LF+EM N N      C+P+ +++ T+IDG  K 
Sbjct: 380 GLNPALFDYNTLMASLCKEGSLEQAKSLFQEMGNAN------CEPDIISFNTMIDGTLKA 433

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G     KEL ++M +  + PD +T+++LI+      + +EA   L  M+  G  PD + +
Sbjct: 434 GDFQFVKELQMKMVEMGLRPDALTFSTLINRLSKLGELDEAKSALERMVASGFTPDALVY 493

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           + ++  L   G   E   LL  M  +G   +    ST++   C
Sbjct: 494 DSLLKGLSSKGDTTEIINLLHQMAAKGTVLDRKIVSTILTCLC 536



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/148 (30%), Positives = 72/148 (48%), Gaps = 4/148 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  M N     P + SFN +     K   +  V  L  ++   GL PD  T++ L
Sbjct: 403 QAKSLFQEMGNAN-CEPDIISFNTMIDGTLKAGDFQFVKELQMKMVEMGLRPDALTFSTL 461

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   K+G +      L R++ S FTPDA+ + SL+KGL ++    E   L  ++ A G 
Sbjct: 462 INRLSKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGT 521

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFE 236
             +    ST++  LC   H+I  +++ E
Sbjct: 522 VLDRKIVSTILTCLC---HSIQEVDVME 546


>gi|296089773|emb|CBI39592.3| unnamed protein product [Vitis vinifera]
          Length = 577

 Score =  179 bits (453), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 159/288 (55%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S N +   L K      V S++K +    +  ++ T++++IN  CK+G+      V+  +
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM 255

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
               F+P  + + ++I G C   ++ +A AL  ++ A    PN IT++ LI+G CR  + 
Sbjct: 256 KAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENV 315

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  +FEEM           +PN VTY ++I+GLC  G +D+A  L  +M    + P+V
Sbjct: 316 TAAKKVFEEMQRQG------LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+LI+GFC      EA  +L ++  +G+ P+V+TFN ++D   K G+MD+A  L  +
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  GV PN ST++ L+ GFC  G V  A++L   ME  G K  + +Y
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTY 477



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 150/287 (52%), Gaps = 9/287 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K        +L K + +  + P+  T+NILI+ FC+   V+    V
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R    P+ V + SLI GLC+  ++ EA  L  K+   G KPNV+TY+ LING C+
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  L    EM +  GK G+   PN +T+ T+ID   K G +D A  L   M D  +
Sbjct: 382 KK----MLKEAREMLDDIGKRGLA--PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TYN LI GFC   +  EA  L  EM   G++ D+VT+N+++D LCK G+  +A R
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 345 LLELMIL---RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL+ M L   +G   N  T++ L+ GFC  G++  A  L   M   G
Sbjct: 496 LLDEMTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKG 542



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 83/236 (35%), Positives = 123/236 (52%), Gaps = 9/236 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L      D  L L  +++  GL P++ TYN LIN FCK   +     +
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREM 391

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I +    P+ + F +LI       R+ +A  L + +   G  PNV TY+ LI G CR
Sbjct: 392 LDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCR 451

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---KD 281
            G+   A  L +EM  GNG      K + VTY  ++D LCK+G   KA  L  +M   + 
Sbjct: 452 EGNVKEARKLAKEM-EGNG-----LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEK 505

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           K    ++VTYN LI GFC      EAN LL EM+++G+ P+  T++++ DE+ + G
Sbjct: 506 KGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYDILRDEMMEKG 561



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 114/238 (47%), Gaps = 24/238 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M  M   P  +T +N L     K K       +   +   GL P++ T+N 
Sbjct: 351 DEALGLQDKMSGMGLKPNVVT-YNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K GR+   F++   +L +   P+   +  LI G C E  + EA  L  +++  G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA--NGNGKFGVVCKPNTVTYTTIIDGLCK 265
            K +++TY+ L++ LC+ G T  A+ L +EM      G+     + N VTY  +I G C 
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEMTLMEKKGR-----RANIVTYNVLIKGFCN 524

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           +G +++A  L  +M +K + P+  TY                + L  EMM++G  PD+
Sbjct: 525 KGKLEEANRLLNEMLEKGLIPNRTTY----------------DILRDEMMEKGFIPDI 566


>gi|255584314|ref|XP_002532893.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527353|gb|EEF29498.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 625

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 9/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F++M+ +    P L +  +L   LAK +  D V  ++K++   G+  +++ YN+
Sbjct: 147 QEAIQVFEHMM-VNGFRPHLHACTVLLNSLAKDRLTDMVWKVYKKMARIGVEANIHVYNV 205

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V     +L  +   C  PD   + +LI   C +    EA ++  +++  G
Sbjct: 206 LIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEREG 265

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+++TY++LI+G C+ G    A+ LF+E+ +          PN VTYTT+IDG C+  
Sbjct: 266 IKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDAT--------PNHVTYTTLIDGYCRLN 317

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L  +M+ + + P VVTYNS++   C      +AN LL EM ++ ++PD VT N
Sbjct: 318 DLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVTCN 377

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CK G M  A ++   M+  G+  +  T+  L+ GFC    ++ AKEL +SM   
Sbjct: 378 TLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSMLDA 437

Query: 388 G 388
           G
Sbjct: 438 G 438



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 139/260 (53%), Gaps = 8/260 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N+L     K+   +   +L   + S  +FPDL+TYN LI+ +CK G       V  R+ 
Sbjct: 203 YNVLIHACCKSGDVEKADNLLSEMESKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRME 262

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R    PD V + SLI G C E R+ EA  LF +++     PN +TY+TLI+G CR     
Sbjct: 263 REGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIR--DATPNHVTYTTLIDGYCRLNDLD 320

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            AL L EEM    G +     P  VTY +I+  LC+ G +  A +L  +M +K I PD V
Sbjct: 321 QALRLREEM-EAQGLY-----PTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNV 374

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T N+LI+ +C   D   A  +   M++ G++ D  T+  ++   CK  +MD A  LL  M
Sbjct: 375 TCNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSM 434

Query: 350 ILRGVNPNTSTFSTLMDGFC 369
           +  G +P+  T+S L+DG+C
Sbjct: 435 LDAGFSPSYCTYSWLVDGYC 454



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/346 (28%), Positives = 156/346 (45%), Gaps = 52/346 (15%)

Query: 74  CKSSGQGDITA----ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
           CKS   GD+      ++  E+ C+F          P L ++N L     K   +   LS+
Sbjct: 211 CKS---GDVEKADNLLSEMESKCVF----------PDLFTYNTLISLYCKKGMHYEALSV 257

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
             R+   G+ PD+ TYN LI+ FCK GR+     +   I  +  TP+ V +T+LI G C 
Sbjct: 258 QDRMEREGIKPDIVTYNSLIHGFCKEGRMREAMRLFKEIRDA--TPNHVTYTTLIDGYCR 315

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN--------- 240
            + + +A  L  +++A G  P V+TY++++  LC  G    A  L  EM+          
Sbjct: 316 LNDLDQALRLREEMEAQGLYPTVVTYNSILRKLCEIGRIRDANKLLNEMSEKKIEPDNVT 375

Query: 241 -----------GNGKFGVVCKPNTV---------TYTTIIDGLCKEGFVDKAKELFLQMK 280
                      G+ K  +  K   V         TY  +I G CK   +D AKEL L M 
Sbjct: 376 CNTLINAYCKIGDMKSALKVKNRMVEAGLKLDQFTYKALIHGFCKIREMDGAKELLLSML 435

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLI--EMMDQGVQPDVVTFNVIMDELCKNGK 338
           D   +P   TY+ L+ G+C  N  NE   L +  E + +G+  D   +  ++   CK  +
Sbjct: 436 DAGFSPSYCTYSWLVDGYC--NQQNEEAVLKLPDEFVRKGLCVDKSLYRALIRRFCKREQ 493

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +D A ++  LM  +G   ++  +++L   +   G+ N A +L   M
Sbjct: 494 VDYAKKIFSLMQEKGTLGDSVIYTSLAYAYWKLGKANAASDLLDEM 539


>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  178 bits (452), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 160/321 (49%), Gaps = 34/321 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L K    D    LF  +++ G  PD  TY  +++  CK G++     +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            GR     F P    + +LI G+C E RI  A  L  ++   G  PNV++YS +IN LC 
Sbjct: 237 AGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCV 291

Query: 225 TGHTIVALNLFEEM------ANGN------------GKFGVV-----------CKPNTVT 255
           +G+  +A  LF +M      AN +            GK               C+PN V 
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+I GLC  G +++A ++  QM+     P+V TY+ LI GF  + D   A+     M+
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G +P+VVT+  ++D LCKN   D+A+ L+E M L G  PNT TF+T + G C  GRV 
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVE 471

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A +L   M+  GC   + +Y
Sbjct: 472 WAMKLLERMQGHGCLPNITTY 492



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   + K    +  + L   +   G+ P++ +Y+ +IN  C  G V   F +
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             ++ LR C   +   FT LIKG     ++ EA  L+  +   GC+PNV+ Y+TLI+GLC
Sbjct: 302 FAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    AL + ++M          C PN  TY+ +IDG  K G +  A E + +M    
Sbjct: 361 SNGSLEEALQVCDQMQRSG------CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+VVTY  ++   C  + +++AN L+ +M  +G  P+ +TFN  +  LC NG+++ A 
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAM 474

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LLE M   G  PN +T++ L+D      +   A  LF  +E+   +  + +Y
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTY 527



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           AF +F  M  +R     + +F  L+ GC  + K Y+  L L+K +   G  P++  YN L
Sbjct: 298 AFALFAQMF-LRGCDANIHTFTPLIKGCFMRGKLYEA-LDLWKLMIQDGCEPNVVAYNTL 355

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G +     V  ++ RS   P+   ++ LI G      ++ A+  + ++ + GC
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PNV+TY+ +++ LC+      A +L E+M          C PNT+T+ T I GLC  G 
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG------CTPNTMTFNTFIKGLCGNGR 469

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A +L  +M+     P++ TYN L+      N + EA  L  E+  + +QP++VT+N 
Sbjct: 470 VEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++    + G M EA +L    ++RG  P++ T++T++  +C  G+V  A +L   + SM 
Sbjct: 530 VLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMK 589

Query: 389 CKH 391
             H
Sbjct: 590 EWH 592



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 167/356 (46%), Gaps = 35/356 (9%)

Query: 43  PSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRP 102
           P DP     L+ES          L++   +R  SS  G  +AI  + AF           
Sbjct: 30  PRDPNKQQLLQES--------DVLKRLKTDRNLSSVLGFFSAIANSNAF----------- 70

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSH 160
                +++ ++   L +    D V  + +++   G+    DL+    +IN + ++G    
Sbjct: 71  -QHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFI--CIINGYKRVGSAEQ 127

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  RI      P    +  L+  L +E++      L+T +K  G  PNV TY+ L+ 
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+      A  LF EM+N        C P+ VTYTT++  LCK G +D A+EL  + K
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKG------CPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P V  YN+LI G C       A  LL EMMD GV P+VV+++ I++ LC +G ++
Sbjct: 242 -----PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  L   M LRG + N  TF+ L+ G  + G++  A +L+  M   GC+  V +Y
Sbjct: 297 LAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAY 352



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 42/300 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L      +  L +  ++  +G  P++ TY+ILI+ F K G +      
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASET 406

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++     P+ V +T ++  LC  S   +A +L  K+   GC PN +T++T I GLC 
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTMTFNTFIKGLCG 466

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ L E M  G+G     C PN  TY  ++D L +    ++A  LF +++ +N+
Sbjct: 467 NGRVEWAMKLLERM-QGHG-----CLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNL 520

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++VTYN++++GF  A    EA  L  + + +G  PD +T+N ++   CK GK+  A++
Sbjct: 521 QPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ 580

Query: 345 LLELM------------------------------------ILRGVNPNTSTFSTLMDGF 368
           L+E +                                    I +G+ PN +T++ L+  F
Sbjct: 581 LVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|356499079|ref|XP_003518371.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g09680-like [Glycine max]
          Length = 615

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/263 (37%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           +L+  +  +G  P +Y +N+L++ FCK G V +  +V   I +    P  V+F +LI G 
Sbjct: 234 ALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGC 293

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    + E   L   +++ G  P+V T+S LINGLC+ G       LF+EM       G+
Sbjct: 294 CKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGR----GL 349

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           V  PN VT+TT+IDG CK G VD A + F  M  + + PD+VTYN+LI+G C   D  EA
Sbjct: 350 V--PNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEA 407

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L+ EM   G++PD +TF  ++D  CK+G M+ A  +   M+  G+  +   F+ L+ G
Sbjct: 408 RRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISG 467

Query: 368 FCLTGRVNHAKELFVSMESMGCK 390
            C  GRV+ A  +   M S G K
Sbjct: 468 LCREGRVHDAGRMLTDMLSAGFK 490



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 154/294 (52%), Gaps = 8/294 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +  FN+L     K         +F  +   GL P + ++N LI+  CK G V  GF 
Sbjct: 245 PPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCCKSGDVEEGFR 304

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + G +      PD   F++LI GLC E R+ E + LF ++   G  PN +T++TLI+G C
Sbjct: 305 LKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRGLVPNGVTFTTLIDGQC 364

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           + G   +AL  F+ M A G        +P+ VTY  +I+GLCK G + +A+ L  +M   
Sbjct: 365 KGGKVDLALKNFQMMLAQG-------VRPDLVTYNALINGLCKVGDLKEARRLVNEMTAS 417

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD +T+ +LI G C   D   A  +   M+++G++ D V F  ++  LC+ G++ +A
Sbjct: 418 GLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEGIELDDVAFTALISGLCREGRVHDA 477

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            R+L  M+  G  P+  T++ ++D FC  G V    +L   M+S G    V +Y
Sbjct: 478 GRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKEMQSDGHVPGVVTY 531



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/293 (33%), Positives = 158/293 (53%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K+   +    L   + S G+ PD++T++ LIN  CK GR+  G ++
Sbjct: 281 PTVVSFNTLISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLL 340

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      P+ V FT+LI G C   ++  A   F  + A G +P+++TY+ LINGLC+
Sbjct: 341 FDEMCGRGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCK 400

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G    A  L  EM A+G        KP+ +T+TT+IDG CK+G ++ A E+  +M ++ 
Sbjct: 401 VGDLKEARRLVNEMTASG-------LKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D V + +LI G C     ++A  +L +M+  G +PD  T+ +++D  CK G +    
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGF 513

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LL+ M   G  P   T++ LM+G C  G++ +AK L  +M ++G      +Y
Sbjct: 514 KLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITY 566



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   +FD M   R   P   +F  L     K    D  L  F+ + + G+ PDL TYN 
Sbjct: 335 DEGSLLFDEMCG-RGLVPNGVTFTTLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 393

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK+G +     ++  +  S   PD + FT+LI G C +  +  A  +  ++   G
Sbjct: 394 LINGLCKVGDLKEARRLVNEMTASGLKPDKITFTTLIDGCCKDGDMESALEIKRRMVEEG 453

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + + ++ LI+GLCR G    A  +  +M +         KP+  TYT +ID  CK+G
Sbjct: 454 IELDDVAFTALISGLCREGRVHDAGRMLTDMLSAG------FKPDDPTYTMVIDCFCKKG 507

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V    +L  +M+     P VVTYN+L++G C       A  LL  M++ GV P+ +T+N
Sbjct: 508 DVKMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYN 567

Query: 328 VIMDELCKNG 337
           +++D   K+G
Sbjct: 568 ILLDGHSKHG 577



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 69/120 (57%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++++  L+L++ D    P +  +N L+HGFC A D   A  +  E+  +G++P VV+FN 
Sbjct: 229 IERSWALYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNT 288

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CK+G ++E  RL  +M   GV P+  TFS L++G C  GR++    LF  M   G
Sbjct: 289 LISGCCKSGDVEEGFRLKGVMESEGVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGRG 348



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +F  L   L +         +   + S G  PD  TY ++I+CFCK G V  GF +L  
Sbjct: 459 VAFTALISGLCREGRVHDAGRMLTDMLSAGFKPDDPTYTMVIDCFCKKGDVKMGFKLLKE 518

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P  V + +L+ GLC + ++  A  L   +   G  PN ITY+ L++G  + G 
Sbjct: 519 MQSDGHVPGVVTYNALMNGLCKQGQMKNAKMLLDAMLNVGVAPNDITYNILLDGHSKHGS 578

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           + V +++F      N + G+V   +  +YT +++
Sbjct: 579 S-VDVDIF------NSEKGLVT--DYASYTALVN 603



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%)

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L +E++D G  P +  FNV+M   CK G +  A  + + +  RG+ P   +F+TL+ G C
Sbjct: 235 LYLEVLDSGYPPKIYFFNVLMHGFCKAGDVGNARLVFDEIPKRGLRPTVVSFNTLISGCC 294

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            +G V     L   MES G    VF++
Sbjct: 295 KSGDVEEGFRLKGVMESEGVCPDVFTF 321


>gi|359487666|ref|XP_002277942.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Vitis vinifera]
          Length = 609

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 98/288 (34%), Positives = 159/288 (55%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S N +   L K      V S++K +    +  ++ T++++IN  CK+G+      V+  +
Sbjct: 196 SCNPMLVSLVKEGRIGVVESVYKEMIRRRIGVNVVTFDVVINGLCKVGKFQKAGDVVEDM 255

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
               F+P  + + ++I G C   ++ +A AL  ++ A    PN IT++ LI+G CR  + 
Sbjct: 256 KAWGFSPSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENV 315

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  +FEEM           +PN VTY ++I+GLC  G +D+A  L  +M    + P+V
Sbjct: 316 TAAKKVFEEMQRQG------LQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNV 369

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+LI+GFC      EA  +L ++  +G+ P+V+TFN ++D   K G+MD+A  L  +
Sbjct: 370 VTYNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSM 429

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  GV PN ST++ L+ GFC  G V  A++L   ME  G K  + +Y
Sbjct: 430 MLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTY 477



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/292 (34%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K        +L K + +  + P+  T+NILI+ FC+   V+    V
Sbjct: 262 PSVITYNTIIDGYCKAGKMFKADALLKEMVAKRIHPNEITFNILIDGFCRDENVTAAKKV 321

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R    P+ V + SLI GLC+  ++ EA  L  K+   G KPNV+TY+ LING C+
Sbjct: 322 FEEMQRQGLQPNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCK 381

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  L    EM +  GK G+   PN +T+ T+ID   K G +D A  L   M D  +
Sbjct: 382 KK----MLKEAREMLDDIGKRGLA--PNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGV 435

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TYN LI GFC   +  EA  L  EM   G++ D+VT+N+++D LCK G+  +A R
Sbjct: 436 CPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNILVDALCKKGETRKAVR 495

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M   G+NP+  T++ L+DG+   G    A  +   ME  G +  + +Y
Sbjct: 496 LLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTY 547



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 138/262 (52%), Gaps = 6/262 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L      D  L L  +++  GL P++ TYN LIN FCK   +     +
Sbjct: 332 PNVVTYNSLINGLCSNGKLDEALGLQDKMSGMGLKPNVVTYNALINGFCKKKMLKEAREM 391

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I +    P+ + F +LI       R+ +A  L + +   G  PNV TY+ LI G CR
Sbjct: 392 LDDIGKRGLAPNVITFNTLIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCR 451

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  L +EM  GNG      K + VTY  ++D LCK+G   KA  L  +M +  +
Sbjct: 452 EGNVKEARKLAKEME-GNG-----LKADLVTYNILVDALCKKGETRKAVRLLDEMFEVGL 505

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NP  +TYN+LI G+    +   A  +   M  +G + ++VT+NV++   C  GK++EA+R
Sbjct: 506 NPSHLTYNALIDGYFREGNSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANR 565

Query: 345 LLELMILRGVNPNTSTFSTLMD 366
           LL  M+ +G+ PN +T+  L D
Sbjct: 566 LLNEMLEKGLIPNRTTYDILRD 587



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 130/250 (52%), Gaps = 7/250 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M  M   P  +T +N L     K K       +   +   GL P++ T+N 
Sbjct: 351 DEALGLQDKMSGMGLKPNVVT-YNALINGFCKKKMLKEAREMLDDIGKRGLAPNVITFNT 409

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K GR+   F++   +L +   P+   +  LI G C E  + EA  L  +++  G
Sbjct: 410 LIDAYGKAGRMDDAFLLRSMMLDTGVCPNVSTYNCLIVGFCREGNVKEARKLAKEMEGNG 469

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K +++TY+ L++ LC+ G T  A+ L +EM      F V   P+ +TY  +IDG  +EG
Sbjct: 470 LKADLVTYNILVDALCKKGETRKAVRLLDEM------FEVGLNPSHLTYNALIDGYFREG 523

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A  +   M+ K    ++VTYN LI GFC      EAN LL EM+++G+ P+  T++
Sbjct: 524 NSTAALNVRTLMEKKGRRANIVTYNVLIKGFCNKGKLEEANRLLNEMLEKGLIPNRTTYD 583

Query: 328 VIMDELCKNG 337
           ++ DE+ + G
Sbjct: 584 ILRDEMMEKG 593



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 7/182 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +   ML+    P  ++++N L     +  +      L K +   GL  DL TYNI
Sbjct: 421 DDAFLLRSMMLDTGVCPN-VSTYNCLIVGFCREGNVKEARKLAKEMEGNGLKADLVTYNI 479

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G       +L  +      P  + + +LI G   E     A  + T ++  G
Sbjct: 480 LVDALCKKGETRKAVRLLDEMFEVGLNPSHLTYNALIDGYFREGNSTAALNVRTLMEKKG 539

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N++TY+ LI G C  G    A  L  EM     + G++  PN  TY  + D + ++G
Sbjct: 540 RRANIVTYNVLIKGFCNKGKLEEANRLLNEML----EKGLI--PNRTTYDILRDEMMEKG 593

Query: 268 FV 269
           F+
Sbjct: 594 FI 595


>gi|414875981|tpg|DAA53112.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 574

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/324 (33%), Positives = 170/324 (52%), Gaps = 32/324 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS---HG 161
           P L +FN++     KT        + K +++ G+ P + TYN LI+ +CK G+V    H 
Sbjct: 186 PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 245

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  ++++  +PD V F  LI G C E  I  A  +F +++  G   NV+TY++L++G
Sbjct: 246 DALLKEMIQAGISPDVVTFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSG 305

Query: 222 LCRTGHTIVALNLFEEMA---------------NGNGKFGVVC--------------KPN 252
           LCR G    ++ L EEM                NG  K G++               KPN
Sbjct: 306 LCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPN 365

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            +TY T++DG  + G + +A      M  K I+P+V TYN LI GF  + DW   + LL 
Sbjct: 366 VITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSVSGLLD 425

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM ++GV+ DVVT+NV++  LC  G++ +A +LL+ M+  G+ P    ++T+++GFC  G
Sbjct: 426 EMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKG 485

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
               A E+ + ME    +  V +Y
Sbjct: 486 DAQGAHEIRLRMEKRKKRANVVTY 509



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 144/346 (41%), Gaps = 85/346 (24%)

Query: 105 PPLTSFNLLF------GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           P + ++N L       G + K  H D   +L K +   G+ PD+ T+N+LIN +CK   +
Sbjct: 221 PSVATYNTLIDGYCKRGQVGKMYHVD---ALLKEMIQAGISPDVVTFNVLINGYCKEPNI 277

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI------------------------- 193
           +    V   + +     + V + SL+ GLC E ++                         
Sbjct: 278 TAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEELGLACILSTMNSV 337

Query: 194 ----------MEAAALFTKLKAFGCKPNVITYSTLINGLCR------------------- 224
                     +EA      +   G KPNVITY+TL++G  R                   
Sbjct: 338 LNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGI 397

Query: 225 -----------TGHTIV-----ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
                      TG T          L +EM           K + VTY  +I  LC +G 
Sbjct: 398 SPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKG------VKADVVTYNVLIGALCCKGE 451

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V KA +L  +M +  + P  V YN++I+GFC   D   A+ + + M  +  + +VVT+NV
Sbjct: 452 VRKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNV 511

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            +   CK GKMDEA+ +L  M+ +G+ PN  T+  +  G    G V
Sbjct: 512 FLKYFCKMGKMDEANVVLNEMLEKGLVPNRITYEIINSGMIEKGYV 557



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/232 (30%), Positives = 118/232 (50%), Gaps = 9/232 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P  ++ N L+    +  RV          LR   +PD   F  +I G C   ++ +A  +
Sbjct: 151 PSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDV 210

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN---LFEEMANGNGKFGVVCKPNTVTY 256
              + A+G  P+V TY+TLI+G C+ G      +   L +EM            P+ VT+
Sbjct: 211 AKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAG------ISPDVVTF 264

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I+G CKE  +  A ++F +M+ + I  +VVTYNSL+ G C      ++  L+ EM +
Sbjct: 265 NVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEMEE 324

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            G+   + T N +++  CK G M EA   ++ +  RG+ PN  T++TL+DG+
Sbjct: 325 LGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITYNTLVDGY 376



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 71/227 (31%), Positives = 117/227 (51%), Gaps = 9/227 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + P A +  +L+  L    R+  A   F         P++ T++ +I+G C+TG     L
Sbjct: 149 YRPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQ----L 204

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK---AKELFLQMKDKNINPDVV 289
               ++A     +GV   P+  TY T+IDG CK G V K      L  +M    I+PDVV
Sbjct: 205 RKAGDVAKNISAWGVA--PSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVV 262

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+N LI+G+C   +   A  +  EM  QG+  +VVT+N ++  LC+ GK++++ +L+E M
Sbjct: 263 TFNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTYNSLVSGLCREGKVEDSIKLVEEM 322

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+    ST +++++GFC  G +  A+     +   G K  V +Y
Sbjct: 323 EELGLACILSTMNSVLNGFCKKGMMVEAEGWVDGIAQRGMKPNVITY 369



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ P++ TYN L++ + ++G++         +     +P+   +  LI G          
Sbjct: 361 GMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSV 420

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           + L  ++K  G K +V+TY+ LI  LC  G    A+ L +EM        V  +P  V Y
Sbjct: 421 SGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVE------VGLEPKHVAY 474

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            TII+G C++G    A E+ L+M+ +    +VVTYN  +  FC     +EAN +L EM++
Sbjct: 475 NTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLE 534

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +G+ P+ +T+ +I   + + G + + S
Sbjct: 535 KGLVPNRITYEIINSGMIEKGYVPDIS 561



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 95/216 (43%), Gaps = 10/216 (4%)

Query: 187 LCAESRIMEAAALFTK---LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           L +E  ++ A  L +    L+A       +    L+  L R    + A   F        
Sbjct: 88  LRSELHVLAAGRLHSPASILRALPASSGPLVADMLVLALARASQPLAAYEAFLLAGADCP 147

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           ++    +P+  +   ++  L +   VD A   F     + ++PD+ T+N +I GFC    
Sbjct: 148 RY----RPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQ 203

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN---GKMDEASRLLELMILRGVNPNTST 360
             +A  +   +   GV P V T+N ++D  CK    GKM     LL+ MI  G++P+  T
Sbjct: 204 LRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVT 263

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           F+ L++G+C    +  A ++F  M   G    V +Y
Sbjct: 264 FNVLINGYCKEPNITAAIKVFQEMRQQGIPANVVTY 299


>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g48810-like [Cucumis sativus]
          Length = 660

 Score =  178 bits (452), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 107/321 (33%), Positives = 160/321 (49%), Gaps = 34/321 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L K    D    LF  +++ G  PD  TY  +++  CK G++     +
Sbjct: 177 PNVFTYNILLKALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            GR     F P    + +LI G+C E RI  A  L  ++   G  PNV++YS +IN LC 
Sbjct: 237 AGR-----FKPSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCV 291

Query: 225 TGHTIVALNLFEEM------ANGN------------GKFGVV-----------CKPNTVT 255
           +G+  +A  LF +M      AN +            GK               C+PN V 
Sbjct: 292 SGNVELAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVA 351

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+I GLC  G +++A ++  QM+     P+V TY+ LI GF  + D   A+     M+
Sbjct: 352 YNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI 411

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G +P+VVT+  ++D LCKN   D+A+ L+E M L G  PNT TF+T + G C  GRV 
Sbjct: 412 SHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVE 471

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A +L   M+  GC   + +Y
Sbjct: 472 WAMKLLERMQGHGCLPNITTY 492



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   + K    +  + L   +   G+ P++ +Y+ +IN  C  G V   F +
Sbjct: 242 PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVELAFAL 301

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             ++ LR C   +   FT LIKG     ++ EA  L+  +   GC+PNV+ Y+TLI+GLC
Sbjct: 302 FAQMFLRGC-DANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLC 360

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    AL + ++M          C PN  TY+ +IDG  K G +  A E + +M    
Sbjct: 361 SNGSLEEALQVCDQMQRSG------CLPNVTTYSILIDGFAKSGDLVGASETWNRMISHG 414

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+VVTY  ++   C  + +++AN L+ +M  +G  P+ +TFN  +  LC NG+++ A 
Sbjct: 415 CRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAM 474

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LLE M   G  PN +T++ L+D      +   A  LF  +E+   +  + +Y
Sbjct: 475 KLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTY 527



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/303 (30%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           AF +F  M  +R     + +F  L+ GC  + K Y+  L L+K +   G  P++  YN L
Sbjct: 298 AFALFAQMF-LRGCDANIHTFTPLIKGCFMRGKLYEA-LDLWKLMIQDGCEPNVVAYNTL 355

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G +     V  ++ RS   P+   ++ LI G      ++ A+  + ++ + GC
Sbjct: 356 IHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMISHGC 415

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PNV+TY+ +++ LC+      A +L E+M          C PNT+T+ T I GLC  G 
Sbjct: 416 RPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEG------CTPNTITFNTFIKGLCGNGR 469

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A +L  +M+     P++ TYN L+      N + EA  L  E+  + +QP++VT+N 
Sbjct: 470 VEWAMKLLERMQGHGCLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNLQPNLVTYNT 529

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++    + G M EA +L    ++RG  P++ T++T++  +C  G+V  A +L   + SM 
Sbjct: 530 VLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQLVERVSSMK 589

Query: 389 CKH 391
             H
Sbjct: 590 EWH 592



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 167/356 (46%), Gaps = 35/356 (9%)

Query: 43  PSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRP 102
           P DP     L+ES          L++   +R  SS  G  +AI  + AF           
Sbjct: 30  PRDPNKQQLLQES--------DVLKRLKTDRNLSSVLGFFSAIANSNAF----------- 70

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL--FPDLYTYNILINCFCKMGRVSH 160
                +++ ++   L +    D V  + +++   G+    DL+    +IN + ++G    
Sbjct: 71  -QHTASTYRVMIERLGRECEMDMVQYILQQMKMDGINCCEDLFI--CIINGYKRVGSAEQ 127

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  RI      P    +  L+  L +E++      L+T +K  G  PNV TY+ L+ 
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSENKFQMINPLYTNMKKDGLIPNVFTYNILLK 187

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+      A  LF EM+N        C P+ VTYTT++  LCK G +D A+EL  + K
Sbjct: 188 ALCKNDRVDAAHKLFVEMSNKG------CPPDAVTYTTMVSSLCKAGKIDDARELAGRFK 241

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P V  YN+LI G C       A  LL EMMD GV P+VV+++ I++ LC +G ++
Sbjct: 242 -----PSVPVYNALIDGMCKEGRIEVAIKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE 296

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  L   M LRG + N  TF+ L+ G  + G++  A +L+  M   GC+  V +Y
Sbjct: 297 LAFALFAQMFLRGCDANIHTFTPLIKGCFMRGKLYEALDLWKLMIQDGCEPNVVAY 352



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 144/300 (48%), Gaps = 42/300 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L      +  L +  ++  +G  P++ TY+ILI+ F K G +      
Sbjct: 347 PNVVAYNTLIHGLCSNGSLEEALQVCDQMQRSGCLPNVTTYSILIDGFAKSGDLVGASET 406

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++     P+ V +T ++  LC  S   +A +L  K+   GC PN IT++T I GLC 
Sbjct: 407 WNRMISHGCRPNVVTYTCMVDVLCKNSMFDQANSLVEKMTLEGCTPNTITFNTFIKGLCG 466

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ L E M  G+G     C PN  TY  ++D L +    ++A  LF +++ +N+
Sbjct: 467 NGRVEWAMKLLERM-QGHG-----CLPNITTYNELLDALFRMNKYEEAFGLFQEIEARNL 520

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++VTYN++++GF  A    EA  L  + + +G  PD +T+N ++   CK GK+  A++
Sbjct: 521 QPNLVTYNTVLYGFSRAGMMGEALQLFGKALVRGTAPDSITYNTMIHAYCKQGKVKIAAQ 580

Query: 345 LLELM------------------------------------ILRGVNPNTSTFSTLMDGF 368
           L+E +                                    I +G+ PN +T++ L+  F
Sbjct: 581 LVERVSSMKEWHPDIITYTSLIWGACNWMNIEEAMAFLDKAINQGICPNFATWNALVRCF 640


>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
          Length = 479

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 101/294 (34%), Positives = 155/294 (52%), Gaps = 14/294 (4%)

Query: 104 PPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP + S N+L   L K +   ++   LF+ + + G  PD YTY  LIN  CK+G++S   
Sbjct: 152 PPTVVSLNILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAK 211

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +L  +     +P  V++TSLI GLC  + + EA  L  ++   G +PNV TYS+L++GL
Sbjct: 212 ELLDEMEEKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGL 271

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C++GH+  A+ L E M            PN VTY+T+I+GLCKEG   +A E+  +M+ +
Sbjct: 272 CKSGHSSQAMELLEVMVRRR------LLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQ 325

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-------NVIMDELCK 335
            + PD   Y  +I G C A ++ EA   + EM   G+ P+  ++       N+++  LC 
Sbjct: 326 GLKPDAGMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCN 385

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           N     A +L   M  RG++    TF  L+  FC  G +N A  +   M   GC
Sbjct: 386 NVDPTRAFQLYLSMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGC 439



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/217 (37%), Positives = 130/217 (59%), Gaps = 7/217 (3%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VALN 233
           P   ++ ++   L  E+ +  A   + +++  G  P V++ + LI  LC+   T+  A  
Sbjct: 118 PTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLNILIKALCKNEETVESAFR 177

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           LF EM N        C+P++ TY T+I+GLCK G + +AKEL  +M++K ++P VV+Y S
Sbjct: 178 LFREMPNRG------CQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTS 231

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LIHG C +N+ +EA  LL EM+  G++P+V T++ +MD LCK+G   +A  LLE+M+ R 
Sbjct: 232 LIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRR 291

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           + PN  T+STL++G C  G+   A E+   M   G K
Sbjct: 292 LLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLK 328



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 160/312 (51%), Gaps = 19/312 (6%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +F  M + +  P    S+  +F  L +  H    +  +K +   G+ P + + N
Sbjct: 101 PLDAIRVFHKMEDFQVKPTQ-KSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLN 159

Query: 147 ILINCFCKMGRVSHGFVVLGRIL--RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           ILI   CK          L R +  R C  PD+  + +LI GLC   +I +A  L  +++
Sbjct: 160 ILIKALCKNEETVESAFRLFREMPNRGC-QPDSYTYGTLINGLCKLGKISQAKELLDEME 218

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGL 263
             G  P+V++Y++LI+GLC++ +   A+ L EEM  NG        +PN  TY++++DGL
Sbjct: 219 EKGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIING-------IEPNVFTYSSLMDGL 271

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G   +A EL   M  + + P++VTY++LI+G C      EA  +L  M  QG++PD 
Sbjct: 272 CKSGHSSQAMELLEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDA 331

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNH 376
             +  I+  LC      EA+  ++ M L G++PN ++++        ++ G C       
Sbjct: 332 GMYGRIISGLCAACNYQEAANFIDEMALGGISPNRASWTFHVKMHNMVVQGLCNNVDPTR 391

Query: 377 AKELFVSMESMG 388
           A +L++SM + G
Sbjct: 392 AFQLYLSMRTRG 403



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 116/225 (51%), Gaps = 7/225 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F  D   F ++I  L + ++   A  +  ++K   C+     + T+  G  R    + A+
Sbjct: 46  FRHDHNTFGAMIHRLVSVNQFRPAEGMLERMKQEDCEVTEDVFLTICRGYGRVHRPLDAI 105

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            +F +M +    F V  KP   +Y T+ D L +E  V +A   + +M++K I P VV+ N
Sbjct: 106 RVFHKMED----FQV--KPTQKSYLTVFDILVEENHVKRAIGFYKEMREKGIPPTVVSLN 159

Query: 293 SLIHGFCYANDWNE-ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            LI   C   +  E A  L  EM ++G QPD  T+  +++ LCK GK+ +A  LL+ M  
Sbjct: 160 ILIKALCKNEETVESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEE 219

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +G++P+  ++++L+ G C +  ++ A EL   M   G +  VF+Y
Sbjct: 220 KGLSPSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTY 264



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 105/255 (41%), Gaps = 48/255 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+  L   L ++ + D  + L + +   G+ P+++TY+ L++  CK G  S    +
Sbjct: 224 PSVVSYTSLIHGLCQSNNLDEAIELLEEMIINGIEPNVFTYSSLMDGLCKSGHSSQAMEL 283

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R    P+ V +++LI GLC E +  EA  +  +++  G KP+   Y  +I+GLC 
Sbjct: 284 LEVMVRRRLLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCA 343

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT-------TIIDGLC------------- 264
             +   A N  +EMA G         PN  ++T        ++ GLC             
Sbjct: 344 ACNYQEAANFIDEMALGG------ISPNRASWTFHVKMHNMVVQGLCNNVDPTRAFQLYL 397

Query: 265 ----------------------KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                                 K G ++KA  +  +M      PD   +N L+ G     
Sbjct: 398 SMRTRGISVEIGTFDCLVKCFCKRGDLNKAARILEEMILDGCIPDEGMWNVLMCGLWDRK 457

Query: 303 DWNEANCLLIEMMDQ 317
              E   LL+  + Q
Sbjct: 458 KVRETTELLVAELKQ 472


>gi|297797449|ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312444|gb|EFH42868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 724

 Score =  178 bits (451), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 170/318 (53%), Gaps = 6/318 (1%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G +T    ++A  +   M+      P + ++N L     K       L + + + + G 
Sbjct: 355 HGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGC 414

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++Y+Y IL++ FCK+G++   + +L  +      P+ V F  LI   C E RI EA  
Sbjct: 415 KPNVYSYTILVDGFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 474

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F ++   GCKP+V T+++LI+GLC       AL L  +M +     GVV   NTVTY T
Sbjct: 475 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE----GVVA--NTVTYNT 528

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+   + G + +A++L  +M  +    D +TYNSLI G C A + ++A  L  +M+  G
Sbjct: 529 LINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 588

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + P  ++ N++++ LC++G ++EA    + M+LRG  P+  TF++L++G C  GR+    
Sbjct: 589 LVPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 648

Query: 379 ELFVSMESMGCKHTVFSY 396
            +F  +++ G      +Y
Sbjct: 649 TMFRKLQAEGIPPDTVTY 666



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 154/305 (50%), Gaps = 12/305 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  ML+ R  PP L +F ++   L      D+ LS+ + +   G  P+   Y  LI+  
Sbjct: 198 VFYDMLS-RKIPPTLFTFGVVMKALCAVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSL 256

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K  RV+    +L  +      PDA  F  +I GLC   RI EAA +  ++   G  P+ 
Sbjct: 257 SKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDD 316

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           ITY  L+NGLC+ G    A +LF  +           KP +V + T+I G    G +D A
Sbjct: 317 ITYGYLMNGLCKIGRVDAAKDLFYRIP----------KPTSVIFNTLIHGFVTHGRLDDA 366

Query: 273 KELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           K +   M     I PDV TYNSLI+G+        A  +L +M ++G +P+V ++ +++D
Sbjct: 367 KAVLSDMVTSYGIVPDVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVD 426

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             CK GK+DEA  LL  M   G+ PNT  F+ L+  FC   R+  A E+F  M   GCK 
Sbjct: 427 GFCKLGKIDEAYNLLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKP 486

Query: 392 TVFSY 396
            V+++
Sbjct: 487 DVYTF 491



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + + M  M   P   T  +++ G L K    +    +  R+   G  PD  TY  
Sbjct: 263 NEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRMLIRGFTPDDITYGY 321

Query: 148 LINCFCKMGRVS---------------------HGFVVLGR------ILRSCFT-----P 175
           L+N  CK+GRV                      HGFV  GR      +L    T     P
Sbjct: 322 LMNGLCKIGRVDAAKDLFYRIPKPTSVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 381

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   + SLI G   +  +  A  +   ++  GCKPNV +Y+ L++G C+ G    A NL 
Sbjct: 382 DVCTYNSLIYGYWKKGLVGLALEVLRDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNLL 441

Query: 236 EEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            EM A+G        KPNTV +  +I   CKE  + +A E+F +M  K   PDV T+NSL
Sbjct: 442 NEMSADG-------LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 494

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G C  ++   A  LL +M+ +GV  + VT+N +++   + G++ EA +L+  M+ +G 
Sbjct: 495 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 554

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             +  T+++L+ G C  G V+ A+ LF  M
Sbjct: 555 LLDEITYNSLIKGLCRAGEVDKARSLFEKM 584



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 84/261 (32%), Positives = 136/261 (52%), Gaps = 6/261 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN L     K       + +F+ +   G  PD+YT+N LI+  C++  + H   +
Sbjct: 451 PNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWL 510

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++      + V + +LI        I EA  L  ++   G   + ITY++LI GLCR
Sbjct: 511 LRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCR 570

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +LFE+M     + G+V  P++++   +I+GLC+ G V++A E   +M  +  
Sbjct: 571 AGEVDKARSLFEKML----RDGLV--PSSISCNILINGLCRSGMVEEAVEFQKEMVLRGS 624

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VT+NSLI+G C A    +   +  ++  +G+ PD VT+N +M  LCK G + +A  
Sbjct: 625 TPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACL 684

Query: 345 LLELMILRGVNPNTSTFSTLM 365
           LL+  I  G  PN  T+S L+
Sbjct: 685 LLDEGIEDGFVPNDRTWSILL 705



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 127/255 (49%), Gaps = 7/255 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF  M   +   P + +FN L   L +       L L + + S G+  +  TYN L
Sbjct: 471 EAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 529

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN F + G +     ++  ++      D + + SLIKGLC    + +A +LF K+   G 
Sbjct: 530 INAFLRRGEIKEARKLVNEMVFQGSLLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGL 589

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ I+ + LINGLCR+G    A+   +EM            P+ VT+ ++I+GLC+ G 
Sbjct: 590 VPSSISCNILINGLCRSGMVEEAVEFQKEMVLRGST------PDIVTFNSLINGLCRAGR 643

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++    +F +++ + I PD VTYN+L+   C      +A  LL E ++ G  P+  T+++
Sbjct: 644 IEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNDRTWSI 703

Query: 329 IMDELCKNGKMDEAS 343
           ++  L     +D  +
Sbjct: 704 LLQSLVPQETLDRRT 718



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 6/177 (3%)

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
            + C+P   +Y+ ++  L       VA N+F +M +          P   T+  ++  LC
Sbjct: 169 VYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRK------IPPTLFTFGVVMKALC 222

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
               VD A  +   M      P+ V Y +LIH     N  NEA  LL EM   G  PD  
Sbjct: 223 AVNEVDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAE 282

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           TFN ++  LCK  +++EA++++  M++RG  P+  T+  LM+G C  GRV+ AK+LF
Sbjct: 283 TFNDVILGLCKFDRINEAAKMVNRMLIRGFTPDDITYGYLMNGLCKIGRVDAAKDLF 339



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/135 (27%), Positives = 63/135 (46%), Gaps = 1/135 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F+ ML     P  + S N+L   L ++   +  +   K +   G  PD+ T+N 
Sbjct: 575 DKARSLFEKMLRDGLVPSSI-SCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS 633

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C+ GR+  G  +  ++      PD V + +L+  LC    + +A  L  +    G
Sbjct: 634 LINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTYNTLMSWLCKGGFVYDACLLLDEGIEDG 693

Query: 208 CKPNVITYSTLINGL 222
             PN  T+S L+  L
Sbjct: 694 FVPNDRTWSILLQSL 708



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 61/171 (35%), Gaps = 36/171 (21%)

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNI------------------------------ 284
            Y  +I  L   G       L +QMKD+ I                              
Sbjct: 107 VYQVLIGKLGSNGEFKTIDRLLMQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 166

Query: 285 ------NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
                  P   +YN ++      N    A  +  +M+ + + P + TF V+M  LC   +
Sbjct: 167 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKALCAVNE 226

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D A  +L  M   G  PN+  + TL+       RVN A +L   M  MGC
Sbjct: 227 VDSALSVLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 277


>gi|242045792|ref|XP_002460767.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
 gi|241924144|gb|EER97288.1| hypothetical protein SORBIDRAFT_02g034620 [Sorghum bicolor]
          Length = 762

 Score =  178 bits (451), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 163/325 (50%), Gaps = 33/325 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M     SPP + ++ +L          +  + L   + + G+ P+   Y  +
Sbjct: 280 DARQLFDEM----ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGVEPNATVYTSV 335

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  GRVS    V+  ++      D   +T+++ G C +  ++ A   F +++  G 
Sbjct: 336 VALLCDKGRVSDALTVVEDMVHHKVILDEAVYTTVLSGFCNKGDLVSARRWFDEMQRKGL 395

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM---------------ANGNGKFGVVCK--- 250
             + +TY+TLINGLCR G    A  + +EM                +G  K G + +   
Sbjct: 396 ATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQ 455

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      PN VTYT + DGLCK+G V  A EL  +M +K +  +  TYNSLI+G C
Sbjct: 456 VHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLC 515

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A   ++A   + +M   G++PDV T+  ++D LCK+G++D A  LL+ M+  G+ P   
Sbjct: 516 KAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIV 575

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ LM+GFC++GRV   K+L   M
Sbjct: 576 TYNVLMNGFCMSGRVEGGKKLLEWM 600



 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 138/255 (54%), Gaps = 6/255 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           F  +   GL  D  TY  LIN  C+ G +     VL  +L      D V +T L+ G C 
Sbjct: 387 FDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCK 446

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             ++ EA  +   +   G  PNV+TY+ L +GLC+ G    A  L  EM+N   +     
Sbjct: 447 RGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLEL---- 502

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
             N  TY ++I+GLCK G++D+A      M    + PDV TY +LI   C + + + A+ 
Sbjct: 503 --NACTYNSLINGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHD 560

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL EM+D G++P +VT+NV+M+  C +G+++   +LLE M+ + ++PN +T+++LM  +C
Sbjct: 561 LLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYC 620

Query: 370 LTGRVNHAKELFVSM 384
           +   +    E++  M
Sbjct: 621 IGNNMKSTTEIYKGM 635



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 144/288 (50%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  L   L +         + + + +  L  D  TY +L++ +CK G+++  F V   +
Sbjct: 401 TYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTVLVDGYCKRGKMAEAFQVHNTM 460

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++    P+ V +T+L  GLC +  +  A  L  ++   G + N  TY++LINGLC+ G+ 
Sbjct: 461 VQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 520

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+    +M           KP+  TYTT+ID LCK G +D+A +L  +M D  I P +
Sbjct: 521 DQAMRTMADMDAAG------LKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTI 574

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN L++GFC +        LL  M+++ + P+  T+N +M + C    M   + + + 
Sbjct: 575 VTYNVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKG 634

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  R V PN +T++ L+ G C    +  A+     M   G + T  SY
Sbjct: 635 MCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSY 682



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 150/308 (48%), Gaps = 15/308 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF---PD--LYTYNIL 148
           FD +L   PS P L      +G     +  + VLS      +  LF   PD  + +YNIL
Sbjct: 210 FDLLLLCLPSAPLLRRVRQ-YGISPSPEACNAVLSRLPLDEAIELFQGLPDKNVCSYNIL 268

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  GRV     +   +      PD V +  LI G CA   +  A  L   + A G 
Sbjct: 269 LKVLCGAGRVEDARQLFDEM---ASPPDVVTYGILIHGYCALGELENAVKLLDDMVARGV 325

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN   Y++++  LC  G    AL + E+M +      V+   +   YTT++ G C +G 
Sbjct: 326 EPNATVYTSVVALLCDKGRVSDALTVVEDMVH----HKVIL--DEAVYTTVLSGFCNKGD 379

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+  F +M+ K +  D VTY +LI+G C A +  EA  +L EM+ + +  D VT+ V
Sbjct: 380 LVSARRWFDEMQRKGLATDGVTYTTLINGLCRAGELKEAEKVLQEMLARRLDVDEVTYTV 439

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM EA ++   M+ RGV PN  T++ L DG C  G V  A EL   M + G
Sbjct: 440 LVDGYCKRGKMAEAFQVHNTMVQRGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKG 499

Query: 389 CKHTVFSY 396
            +    +Y
Sbjct: 500 LELNACTY 507



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 6/252 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ P++ TY  L +  CK G V     +L  +       +A  + SLI GLC    + +A
Sbjct: 464 GVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYLDQA 523

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
                 + A G KP+V TY+TLI+ LC++G    A +L +EM + NG      KP  VTY
Sbjct: 524 MRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLD-NG-----IKPTIVTY 577

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +++G C  G V+  K+L   M +KNI+P+  TYNSL+  +C  N+      +   M  
Sbjct: 578 NVLMNGFCMSGRVEGGKKLLEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCS 637

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + V+P+  T+N+++   CK   M EA      MI +G     S++S L+       +   
Sbjct: 638 RNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSALIRLLNKKKKFVE 697

Query: 377 AKELFVSMESMG 388
           A++LF  M   G
Sbjct: 698 ARKLFHDMRKEG 709



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 121/278 (43%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  R   P + ++  L   L K         L   +++ GL  +  TYN L
Sbjct: 452 EAFQVHNTMVQ-RGVAPNVVTYTALSDGLCKQGDVQAANELLHEMSNKGLELNACTYNSL 510

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G +      +  +  +   PD   +T+LI  LC    +  A  L  ++   G 
Sbjct: 511 INGLCKAGYLDQAMRTMADMDAAGLKPDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGI 570

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP ++TY+ L+NG C +G       L E M   N        PN  TY +++   C    
Sbjct: 571 KPTIVTYNVLMNGFCMSGRVEGGKKLLEWMLEKN------IHPNATTYNSLMKQYCIGNN 624

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  +N+ P+  TYN LI G C A    EA     EM+++G +    +++ 
Sbjct: 625 MKSTTEIYKGMCSRNVEPNENTYNILIKGHCKARSMKEAQYFHNEMIEKGFRLTASSYSA 684

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++  L K  K  EA +L   M   G       ++  +D
Sbjct: 685 LIRLLNKKKKFVEARKLFHDMRKEGFTAEPDVYNFYID 722



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 100/228 (43%), Gaps = 10/228 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K+   D    L + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 537 PDVYTYTTLIDALCKSGELDRAHDLLQEMLDNGIKPTIVTYNVLMNGFCMSGRVEGGKKL 596

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+A  + SL+K  C  + +     ++  + +   +PN  TY+ LI G C+
Sbjct: 597 LEWMLEKNIHPNATTYNSLMKQYCIGNNMKSTTEIYKGMCSRNVEPNENTYNILIKGHCK 656

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A     EM     +          +Y+ +I  L K+    +A++LF  M+ +  
Sbjct: 657 ARSMKEAQYFHNEMIEKGFRL------TASSYSALIRLLNKKKKFVEARKLFHDMRKEGF 710

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +   YN  I  F +  D  EA    + + D+ V+  +V     MD+
Sbjct: 711 TAEPDVYNFYI-DFNFNEDNLEAT---LALCDELVEASIVKSKAEMDQ 754


>gi|255660814|gb|ACU25576.1| pentatricopeptide repeat-containing protein [Junellia spathulata]
          Length = 418

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 154/280 (55%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    ++MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTY 384



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+     T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKLEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 146/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    +    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E    M  +NI  D V Y +LI G C      +A  +L EM+  G++ ++ T+ 
Sbjct: 326 DLETAFEYRKIMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKLEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+L++ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|255660860|gb|ACU25599.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
          Length = 418

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 149/274 (54%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKXKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFG 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G +D A +++ QM ++  +PDVVTYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  LL EM  +G++PD +T+  ++D  CK G ++ A  L E MI   +  
Sbjct: 285 GLCKKGDLKQARYLLDEMSRKGLKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M  +G K
Sbjct: 345 DDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLK 378



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/285 (32%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ESR+ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A++++ +M N          P+ VTY T+I GLCK+G + +A+ L  +M  K 
Sbjct: 253 KNGRLDLAMDIYRQMLNQG------FSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A  L   M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +M+ FC  G V  A EL   M+  G
Sbjct: 367 KMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNG 411



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 94/252 (37%), Positives = 138/252 (54%), Gaps = 6/252 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   + ++G+ PD+YTY++LIN  CK  R+     +
Sbjct: 169 PSVVSFNTLMNGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +L +   P+ V FT+LI G C   R+  A  ++ ++   G  P+V+TY+TLI GLC+
Sbjct: 229 FGEMLDNGLVPNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM+          KP+ +TYTT+IDG CKEG ++ A EL  +M  ++I
Sbjct: 289 KGDLKQARYLLDEMSRKG------LKPDKITYTTLIDGSCKEGDLETAFELRERMIKESI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +IM+E CK G + +AS 
Sbjct: 343 RLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLKPDDETYTMIMNEFCKKGDVKKASE 402

Query: 345 LLELMILRGVNP 356
           LL  M   G  P
Sbjct: 403 LLREMQRNGRVP 414



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/228 (33%), Positives = 116/228 (50%), Gaps = 8/228 (3%)

Query: 100 MRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           MR S   P + ++++L   L K    D    LF  +   GL P+  T+  LI+  CK GR
Sbjct: 197 MRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLVPNGVTFTTLIDGHCKNGR 256

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +  ++L   F+PD V + +LI GLC +  + +A  L  ++   G KP+ ITY+T
Sbjct: 257 LDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYLLDEMSRKGLKPDKITYTT 316

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C+ G    A  L E M   +       + + V YT +I GLC+EG    A+++  
Sbjct: 317 LIDGSCKEGDLETAFELRERMIKES------IRLDDVVYTALIFGLCQEGRAVDAEKMLR 370

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +M    + PD  TY  +++ FC   D  +A+ LL EM   G  P VVT
Sbjct: 371 EMLRVGLKPDDETYTMIMNEFCKKGDVKKASELLREMQRNGRVPCVVT 418



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 67/256 (26%), Positives = 128/256 (50%), Gaps = 6/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+Y ++ LI  + + G +           +  F        ++++ L            +
Sbjct: 65  DIYVFSGLITAYLESGFIRDAIECFRLTKKHSFRVPFDTCRNVLEHLMKXKYFKLVWGFY 124

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   G   ++  ++ L++  C+ G   +A ++F+ +     K+G+  +P+ V++ T++
Sbjct: 125 KEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAIT----KWGL--RPSVVSFNTLM 178

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +G  K G +D+   L   M+   + PDV TY+ LI+G C  +  +EAN L  EM+D G+ 
Sbjct: 179 NGYIKLGDLDEGFRLKNAMRASGVQPDVYTYSVLINGLCKESRMDEANGLFGEMLDNGLV 238

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+ VTF  ++D  CKNG++D A  +   M+ +G +P+  T++TL+ G C  G +  A+ L
Sbjct: 239 PNGVTFTTLIDGHCKNGRLDLAMDIYRQMLNQGFSPDVVTYNTLIYGLCKKGDLKQARYL 298

Query: 381 FVSMESMGCKHTVFSY 396
              M   G K    +Y
Sbjct: 299 LDEMSRKGLKPDKITY 314



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  MLN   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 260 AMDIYRQMLNQGFSPDVVTYNTLIYG-LCKKGDLKQARYLLDEMSRKGLKPDKITYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F +  R+++     D V +T+LI GLC E R ++A  +  ++   G K
Sbjct: 319 DGSCKEGDLETAFELRERMIKESIRLDDVVYTALIFGLCQEGRAVDAEKMLREMLRVGLK 378

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
           P+  TY+ ++N  C+ G    A  L  EM   NG+
Sbjct: 379 PDDETYTMIMNEFCKKGDVKKASELLREMQR-NGR 412


>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
 gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
          Length = 758

 Score =  177 bits (450), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 163/322 (50%), Gaps = 31/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N     L +  H    L +   +   G  PD++TYN +INC  K G +     +
Sbjct: 300 PDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGI 359

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + +++ R C  PD   F +LI  L +++R+ EA  L  +L   G  P+V T++ LIN LC
Sbjct: 360 VNQMVDRGCL-PDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALC 418

Query: 224 RTGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTV 254
           + G   + + LFEEM +                    GK G             C  +TV
Sbjct: 419 KVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTV 478

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY TIID LCK+  +++A+E+F QM  + I+   VT+N+LI G C A   ++A  L+ +M
Sbjct: 479 TYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATELIEQM 538

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + +G+QP+ +T+N I+   CK G + +A+ +LE M   G   +  T+ TL++G C  GR 
Sbjct: 539 VKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLCKAGRT 598

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +L   M   G + T  +Y
Sbjct: 599 QVALKLLRGMRIKGIRPTPKAY 620



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 160/310 (51%), Gaps = 9/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I + M++ R   P  T+FN L   L+     +  L L + L   GL PD+YT+NI
Sbjct: 354 DEAKGIVNQMVD-RGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNI 412

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK+G    G  +   +  S  TPD V +  LI  LC+  ++  A  L  ++++ G
Sbjct: 413 LINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNG 472

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C  + +TY+T+I+ LC+      A  +F++M A G  +       + VT+ T+IDGLCK 
Sbjct: 473 CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISR-------SAVTFNTLIDGLCKA 525

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +D A EL  QM  + + P+ +TYNS++  +C   +  +A  +L  M   G + DVVT+
Sbjct: 526 KRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTY 585

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             +++ LCK G+   A +LL  M ++G+ P    ++ ++        +  A  LF  M  
Sbjct: 586 GTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMTE 645

Query: 387 MGCKHTVFSY 396
           +G      +Y
Sbjct: 646 VGEPPDALTY 655



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 148/296 (50%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + + N L   L +     T + + + ++S G+ PD  T+  L+  F + G +  
Sbjct: 191 RGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEA 250

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V  +++ +  +P  V    LI G C   R+ +A     +  A G +P+ +TY+T ++
Sbjct: 251 ALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTFVH 310

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC+ GH   AL + + M            P+  TY T+I+ L K G +D+AK +  QM 
Sbjct: 311 GLCQNGHVSHALKVMDLMLQEGH------DPDVFTYNTVINCLSKNGELDEAKGIVNQMV 364

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D+   PD  T+N+LI      N   EA  L  E+  +G+ PDV TFN++++ LCK G   
Sbjct: 365 DRGCLPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTFNILINALCKVGDPH 424

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              RL E M   G  P+  T++ L+D  C  G++ +A +L   MES GC  +  +Y
Sbjct: 425 LGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGKLGNALDLLNEMESNGCPRSTVTY 480



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 8/288 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L   L +      + S++  +   G+ PD+ T N LI   C+  +V    ++L  + 
Sbjct: 165 FNHLLNVLVEGSKLKLLESVYNEMTGRGIQPDVVTLNTLIKALCRAHQVRTAVLMLEEMS 224

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   FT+L++G   E  I  A  +  K+   GC P  +T + LING C+ G   
Sbjct: 225 SHGVAPDETTFTTLMQGFIEEGSIEAALRVKAKMMEAGCSPTGVTVNVLINGYCKMGRVE 284

Query: 230 VALNLFE-EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            AL   + E+A+G        +P+ VTY T + GLC+ G V  A ++   M  +  +PDV
Sbjct: 285 DALGYIQQEIADG-------FEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQEGHDPDV 337

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            TYN++I+      + +EA  ++ +M+D+G  PD  TFN ++  L    +++EA  L   
Sbjct: 338 FTYNTVINCLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALSSQNRLEEALDLARE 397

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++G++P+  TF+ L++  C  G  +    LF  M+S GC     +Y
Sbjct: 398 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTY 445



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 7/292 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L ++   P + +FN+L   L K       + LF+ + S+G  PD  TYNILI+  C MG+
Sbjct: 398 LTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSMGK 457

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           + +   +L  +  +      V + ++I  LC + RI EA  +F ++ A G   + +T++T
Sbjct: 458 LGNALDLLNEMESNGCPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNT 517

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC+      A  L E+M     K G+  +PN +TY +I+   CK+G + KA ++  
Sbjct: 518 LIDGLCKAKRIDDATELIEQMV----KEGL--QPNNITYNSILTHYCKQGNIKKAADILE 571

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M       DVVTY +LI+G C A     A  LL  M  +G++P    +N ++  L +  
Sbjct: 572 TMTANGFEIDVVTYGTLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRN 631

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR-VNHAKELFVSMESMG 388
            + +A  L   M   G  P+  T+  +    C  G  +  A +  V M + G
Sbjct: 632 NLRDALNLFREMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKG 683



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 9/282 (3%)

Query: 118 AKTKHYDTVLSL-FKRLNST--GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           A+ + +D  + L   +L++   G+  D   +N L+N   +  ++     V   +      
Sbjct: 135 ARLRRFDDAVDLVLNQLDNDTFGVQADTVVFNHLLNVLVEGSKLKLLESVYNEMTGRGIQ 194

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD V   +LIK LC   ++  A  +  ++ + G  P+  T++TL+ G    G    AL +
Sbjct: 195 PDVVTLNTLIKALCRAHQVRTAVLMLEEMSSHGVAPDETTFTTLMQGFIEEGSIEAALRV 254

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             +M          C P  VT   +I+G CK G V+ A     Q       PD VTYN+ 
Sbjct: 255 KAKMMEAG------CSPTGVTVNVLINGYCKMGRVEDALGYIQQEIADGFEPDQVTYNTF 308

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           +HG C     + A  ++  M+ +G  PDV T+N +++ L KNG++DEA  ++  M+ RG 
Sbjct: 309 VHGLCQNGHVSHALKVMDLMLQEGHDPDVFTYNTVINCLSKNGELDEAKGIVNQMVDRGC 368

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+T+TF+TL+       R+  A +L   +   G    V+++
Sbjct: 369 LPDTTTFNTLIVALSSQNRLEEALDLARELTVKGLSPDVYTF 410



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 116/248 (46%), Gaps = 7/248 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    ++N +   L K    +    +F ++++ G+     T+N LI+  CK  R+     
Sbjct: 474 PRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAVTFNTLIDGLCKAKRIDDATE 533

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ ++++    P+ + + S++   C +  I +AA +   + A G + +V+TY TLINGLC
Sbjct: 534 LIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYGTLINGLC 593

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T VAL L   M           +P    Y  +I  L +   +  A  LF +M +  
Sbjct: 594 KAGRTQVALKLLRGMRIKG------IRPTPKAYNPVIQSLFRRNNLRDALNLFREMTEVG 647

Query: 284 INPDVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             PD +TY  +    C       EA   L+EM+++G  P+  +F ++ + L   G  D  
Sbjct: 648 EPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNLGMDDYL 707

Query: 343 SRLLELMI 350
              +EL+I
Sbjct: 708 ISAIELII 715


>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 452

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 21/301 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF ++  ML  R SP  +T   L++GCL   +  + V  LF ++    + PD+YT+NIL
Sbjct: 137 DAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAV-GLFNQMLLKNIKPDIYTFNIL 195

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G +     VL  +++    PD + + SL+ G     +  +A  +F  +   G 
Sbjct: 196 VDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGV 255

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V +YS +INGLC+T     A+NL +EM + +        PNTVTY+++IDGL K G 
Sbjct: 256 TPDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKS------MAPNTVTYSSLIDGLHKSGR 309

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +L  +M ++    DV+TYNSL+   C  +  ++A  LL ++ DQG+QPD+ T+ +
Sbjct: 310 IFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTI 369

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCKNG++ +A  + ++++++              G+ L    + A  L   ME  G
Sbjct: 370 LVDGLCKNGRLKDAQEVYQILLIK--------------GYHLDSLFDKALSLLSKMEDNG 415

Query: 389 C 389
           C
Sbjct: 416 C 416



 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 35/297 (11%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M    P +  F  +F  L K  H+ TV+SL  ++   G+  DL   NIL+NCFC +G+V 
Sbjct: 1   MNNPTPTIFEFGKIFASLVKINHFHTVISLSHQMELRGIQTDLVNLNILVNCFCHLGQV- 59

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
                                       C   ++ E       + A G + N ++Y TLI
Sbjct: 60  ----------------------------CLNDKVKETLHFHDDVIAKGFQLNQVSYGTLI 91

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +GLC+ G T  A+ +   +       G++ +PN V Y+TII  LCK+  V  A +L+ QM
Sbjct: 92  DGLCKAGETRAAMQVLRNID------GLLVQPNVVMYSTIIYSLCKDKLVIDAFDLYSQM 145

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             K I+PDV+TYN+L++G        EA  L  +M+ + ++PD+ TFN+++D LCK G+M
Sbjct: 146 LLKRISPDVITYNTLMYGCLIVGRLKEAVGLFNQMLLKNIKPDIYTFNILVDGLCKEGEM 205

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +A  +L +MI + V+P+  T+++LMDG+ L  + N A  +F +M   G    V SY
Sbjct: 206 KKARNVLAVMIKQSVDPDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSY 262



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 147/277 (53%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K K       L+ ++    + PD+ TYN L+     +GR+     +
Sbjct: 117 PNVVMYSTIIYSLCKDKLVIDAFDLYSQMLLKRISPDVITYNTLMYGCLIVGRLKEAVGL 176

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L     PD   F  L+ GLC E  + +A  +   +      P+VITY++L++G   
Sbjct: 177 FNQMLLKNIKPDIYTFNILVDGLCKEGEMKKARNVLAVMIKQSVDPDVITYNSLMDGYFL 236

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +F  MA    + GV   P+  +Y+ +I+GLCK   VD+A  L  +M  K++
Sbjct: 237 VKQENKATFVFNTMA----RRGVT--PDVHSYSVMINGLCKTKMVDEAVNLLKEMHSKSM 290

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTY+SLI G   +    +A  L+ EM ++G   DV+T+N ++D LCKN ++D+A  
Sbjct: 291 APNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAIT 350

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LL  +  +G+ P+  T++ L+DG C  GR+  A+E++
Sbjct: 351 LLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVY 387


>gi|359484268|ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 164/303 (54%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA C F   + +   P    SFN+L   L +    D    LF  +   G  PD+ TYN 
Sbjct: 219 DEAVCFFREQMGLH-GPFDSCSFNILIRGLCRIGKVDKAFELFNEMRGFGCSPDVITYNT 277

Query: 148 LINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LIN FC++  V  G  +L  +L ++  +PD V +TS+I G C   ++ +A+ LF  + + 
Sbjct: 278 LINGFCRVNEVDRGHDLLKELLSKNDLSPDVVTYTSIISGYCKLGKMEKASILFNNMISS 337

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KPN  T++ LING  + G  + A N++EEM        + C P+ +T+T++IDG C+ 
Sbjct: 338 GIKPNAFTFNILINGFGKVGDMVSAENMYEEM------LLLGCPPDIITFTSLIDGHCRT 391

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+++ +L+ ++  +N++P+  T+  L +  C  N  +EA   L ++  + +      +
Sbjct: 392 GKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEARGFLRDLKWRHIVAQPFMY 451

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK G +DEA+ +L  M  +   P+  T++ L+ G C+ GR++ A  +F  M  
Sbjct: 452 NPVIDGFCKAGNVDEANVILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLG 511

Query: 387 MGC 389
            GC
Sbjct: 512 TGC 514



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/238 (35%), Positives = 128/238 (53%), Gaps = 7/238 (2%)

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALF 200
           L  YN L+N   +  +V    V   R       P D+ +F  LI+GLC   ++ +A  LF
Sbjct: 202 LVVYNKLLNQLVRGNQVDEA-VCFFREQMGLHGPFDSCSFNILIRGLCRIGKVDKAFELF 260

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            +++ FGC P+VITY+TLING CR        +L +E+ + N        P+ VTYT+II
Sbjct: 261 NEMRGFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKND-----LSPDVVTYTSII 315

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G CK G ++KA  LF  M    I P+  T+N LI+GF    D   A  +  EM+  G  
Sbjct: 316 SGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYEEMLLLGCP 375

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           PD++TF  ++D  C+ GK++ + +L   +  R ++PN  TF+ L +  C   R++ A+
Sbjct: 376 PDIITFTSLIDGHCRTGKVERSLKLWHELNARNLSPNEYTFAILTNALCKENRLHEAR 433



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 138/274 (50%), Gaps = 12/274 (4%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ L   L++   +++  +++  +N  G  PD      L++     G+ +     + R 
Sbjct: 139 TYSFLLRSLSEMGFHESAKAVYDCMNIDGHSPDASVLGFLVSSATDAGKFN-----IART 193

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                    V +  L+  L   +++ EA   F +        +  +++ LI GLCR G  
Sbjct: 194 WVDGVEFSLVVYNKLLNQLVRGNQVDEAVCFFREQMGLHGPFDSCSFNILIRGLCRIGKV 253

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPD 287
             A  LF EM       G  C P+ +TY T+I+G C+   VD+  +L  ++  KN ++PD
Sbjct: 254 DKAFELFNEMR------GFGCSPDVITYNTLINGFCRVNEVDRGHDLLKELLSKNDLSPD 307

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTY S+I G+C      +A+ L   M+  G++P+  TFN++++   K G M  A  + E
Sbjct: 308 VVTYTSIISGYCKLGKMEKASILFNNMISSGIKPNAFTFNILINGFGKVGDMVSAENMYE 367

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            M+L G  P+  TF++L+DG C TG+V  + +L+
Sbjct: 368 EMLLLGCPPDIITFTSLIDGHCRTGKVERSLKLW 401


>gi|125575277|gb|EAZ16561.1| hypothetical protein OsJ_32034 [Oryza sativa Japonica Group]
          Length = 526

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 160/332 (48%), Gaps = 40/332 (12%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
            D ML+ R SP  +T +N +   L K +  D  + +   +  +G+ PD  TYN +++ FC
Sbjct: 104 LDKMLDQRISPNVVT-YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+     V L ++      PD V + SL+  LC   R  EA  +F  +   G KP++ 
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMA-NG----NGKFGV-VC------------------ 249
           TY TL+ G    G  +    L + M  NG    +  F + VC                  
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSILVCAYAKQEKVEEAMLVFSKM 282

Query: 250 -----KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 PN VTY T+ID LCK G V+ A   F QM D+ + PD + YNSLIH  C  + W
Sbjct: 283 RQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKW 342

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            +A  L +EM+D+G+    + FN I+D  CK G++ E+ +L +LM+  GV P+  T    
Sbjct: 343 EKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITL--- 399

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                  GR + AK+LFV+  S G     ++Y
Sbjct: 400 -------GRNDEAKDLFVAFSSNGLVPNYWTY 424



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLING 221
           V   +LR    PD  ++  L+ GLC E+R  EA  L   +   G  C P+V++YST+ING
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             + G         ++M +          PN VTY +II  LCK   VDKA E+   M  
Sbjct: 98  FFKEGD-------LDKMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD +TYNS++HGFC +    EA   L +M   GV+PDVVT+N +MD LCKNG+  E
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE 204

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           A ++ + M  RG+ P+ +T+ TL+ G+   G +     L   M   G    H VFS
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 260



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTY 145
            +A  +FD +L  R   P + S+N+L   L         L L   +   G    PD+ +Y
Sbjct: 34  EDARHVFDELL--RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSY 91

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           + +IN F K G        L ++L    +P+ V + S+I  LC    + +A  + T +  
Sbjct: 92  STVINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+ +TY+++++G C +G    A+   ++M +         +P+ VTY +++D LCK
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG------VEPDVVTYNSLMDYLCK 198

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G   +A+++F  M  + + PD+ TY +L+ G+       E + LL  M+  G+ P+   
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F++++    K  K++EA  +   M  +G+NPN  T+ T++D  C +GRV  A   F  M 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 386 SMGCKHTVFSY 396
             G +     Y
Sbjct: 319 DEGLRPDSIVY 329



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 83/332 (25%), Positives = 140/332 (42%), Gaps = 40/332 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 204 EARKIFDSMTK-RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 262

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + K  +V    +V  ++ +    P+AV + ++I  LC   R+ +A   F ++   G 
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+ I Y++LI+ LC       A  LF EM +       +C  +T+ + +IID  CKEG 
Sbjct: 323 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRG-----IC-LSTIFFNSIIDSHCKEGR 376

Query: 269 V-------------------------DKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           V                         D+AK+LF+      + P+  TY  +         
Sbjct: 377 VIESGKLFDLMVRIGVKPDIITLGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGL 436

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             E + L + M D G   D    N I+ EL + G++  A   L ++  +  +   ST S 
Sbjct: 437 LEELDQLFLSMEDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASL 496

Query: 364 LMDGFCLTGRVNHAKELFVS------MESMGC 389
            +D   L+G       +F+       +ES+ C
Sbjct: 497 FID--LLSGGKYQEYHIFLPEKYKSFIESLSC 526


>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
          Length = 602

 Score =  177 bits (449), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++N+L     K + Y   + L   + + G  P+  TYN+L
Sbjct: 185 DALSVLDDML-CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 243

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C  G V     +L  +      P  V + +++KGLC+  R  +A  L T++    C
Sbjct: 244 MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 303

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN  T++ +I  LCR G    A+ L E+M+    K G  C  N VTY  II+GLC++  
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMS----KHG--CTANIVTYNAIINGLCEQRN 357

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  L  +MK     PD+VTYN+L+ G C A  W +A  L+  M   G  PD VTFN 
Sbjct: 358 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNT 417

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+ G M +A  + + M  +G  PN+ T+ST++ G     +++ A ELF  M   G
Sbjct: 418 LIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 477



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 173/383 (45%), Gaps = 46/383 (12%)

Query: 30  HTRKP-----------KSSISKNEPS----DPTTTAKLKESLRLTVKDRASLEQFLKERC 74
           H R+P           +SS +K  P+     PTT  + +   RL   DR  L   +    
Sbjct: 28  HPRQPTAAGGWLPPRLRSSGAKPPPTPRLESPTTRQQQQAPRRLLGSDR-RLSALVH--- 83

Query: 75  KSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN 134
               +GD+ A            ++   P PP     N L   L +    D      + + 
Sbjct: 84  ----RGDLDAAL---------RLVESSPRPPDAALANRLVRDLCRRGRPDDA---ERVVG 127

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           + G    +  Y  L + +C+ GR+     V+G +      P+A  +  LI  LC   ++ 
Sbjct: 128 ACGPAATVVAYGALTDGYCRAGRLGDARRVVGGMP---VQPNAYTYNPLIHTLCERGQVR 184

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNT 253
           +A ++   +   GC P+V+TY+ L+   C+      A+ L + M A G       C PN 
Sbjct: 185 DALSVLDDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEG-------CTPNN 237

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTY  ++DG+C EG VD A EL   +      P  V YN+++ G C A  W +A+ L+ E
Sbjct: 238 VTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTE 297

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+ +   P+  TFNV++  LC+ G + +A +LLE M   G   N  T++ +++G C    
Sbjct: 298 MLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRN 357

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           V+ A  L   M+S GCK  + +Y
Sbjct: 358 VDGAMGLLSKMKSYGCKPDIVTY 380



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/296 (31%), Positives = 147/296 (49%), Gaps = 8/296 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N L   L +       LS+   +   G  PD+ TYNIL+   CK GR    
Sbjct: 162 PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK-GRGYRQ 220

Query: 162 FVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            + L  ++R+   TP+ V +  L+ G+C E  + +A  L   L + GCKP+ + Y+T++ 
Sbjct: 221 AMELIDLMRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLK 280

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC       A  L  EM   N      C PN  T+  +I  LC++G + +A +L  +M 
Sbjct: 281 GLCSAERWGDADELVTEMLREN------CPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS 334

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                 ++VTYN++I+G C   + + A  LL +M   G +PD+VT+N ++  LC   +  
Sbjct: 335 KHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWV 394

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A  L++ M   G  P+  TF+TL+   C  G +  A E+F  M   GC     +Y
Sbjct: 395 DAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITY 450



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 149/281 (53%), Gaps = 7/281 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN++   L +       + L ++++  G   ++ TYN +IN  C+   V     
Sbjct: 304 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMG 363

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L ++      PD V + +L+KGLC+ ++ ++A  L   +   GC P+ +T++TLI  LC
Sbjct: 364 LLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLPDNVTFNTLIGFLC 423

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A+ +F++M +        C PN++TY+TII GL K   +D+A ELF +M  K 
Sbjct: 424 QKGLMVDAIEVFKQMPDKG------CTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 477

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            NPD + Y  L       +   EA   + ++ D G+ P  V +N I+  LC+NGK + A 
Sbjct: 478 FNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAI 536

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++  M+  G  P+  T+  L++G    G +N A+EL + +
Sbjct: 537 DIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 577


>gi|414587035|tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 94/305 (30%), Positives = 168/305 (55%), Gaps = 8/305 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+  +      P + SFN++   + +  ++   L L +R+   G  PD  T+NI
Sbjct: 196 QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFGCSPDTITHNI 255

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  C+  +V+ G  VL R+ R     P+AV +TS+I G C   ++ +A +++  +   
Sbjct: 256 LVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLES 315

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PN +TY+ LING  +      A+ ++ ++   +      C P+ VT++++IDG C+ 
Sbjct: 316 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRH------CPPDVVTFSSLIDGYCRC 369

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D AK ++ +M   +I P+V T++ +IH  C  N   EA  +L E+ M   + P    
Sbjct: 370 GQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDILRELNMRTDIAPQTFI 429

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK GK+DEA+ ++  M  +G +P+  T++ L+ G C+ GR+  A  LF  M 
Sbjct: 430 YNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMV 489

Query: 386 SMGCK 390
             GC+
Sbjct: 490 EAGCR 494



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 154/291 (52%), Gaps = 9/291 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGR 167
           ++N L   L         ++LF+     GL+ PD++++N++I   C+MG       ++ R
Sbjct: 181 AYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVER 240

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTG 226
           +     +PD +    L+ GLC   ++ +   +  +L+  G C PN +TY+++I+G C+ G
Sbjct: 241 MTEFGCSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDGVCMPNAVTYTSVISGYCKAG 300

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A++++ +M           +PNTVTY  +I+G  K   ++ A  ++ Q+  ++  P
Sbjct: 301 KMEDAMSVYNDMLESG------TRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPP 354

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVT++SLI G+C     ++A  +  EM    +QP+V TF++I+  LCK  +  EA  +L
Sbjct: 355 DVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDIL 414

Query: 347 -ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            EL +   + P T  ++ ++D  C  G+V+ A  +   M+  GC    ++Y
Sbjct: 415 RELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDKYTY 465



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 142/294 (48%), Gaps = 6/294 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M++     P    F+ + G        D   +L  + +  G   + Y YN L
Sbjct: 126 DALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAASTLLTKGSRLGCCIEPYAYNYL 185

Query: 149 INCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +N     GR      +    I    ++PD  +F  +IKG+C      +A  L  ++  FG
Sbjct: 186 LNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVIKGVCRMGNFQKALELVERMTEFG 245

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+ IT++ L++GLCR         +   +         VC PN VTYT++I G CK G
Sbjct: 246 CSPDTITHNILVDGLCRAKQVNKGHEVLRRLQRDG-----VCMPNAVTYTSVISGYCKAG 300

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  ++  M +    P+ VTYN LI+G+  A D   A  +  +++ +   PDVVTF+
Sbjct: 301 KMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRHCPPDVVTFS 360

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            ++D  C+ G++D+A R+ + M L  + PN  TFS ++   C   R   A ++ 
Sbjct: 361 SLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLCKQNRSAEALDIL 414



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 153/293 (52%), Gaps = 16/293 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  +   L ++  +   L LF ++ + +G  P+   ++ +       G +    
Sbjct: 105 PPSEQSYIHVIAFLCRSGRHRDALKLFDQMMDQSGYLPEAGFFSFVAGSCTNAGLLDAAS 164

Query: 163 VVL--GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLI 219
            +L  G  L  C  P   A+  L+  L A  R  +A ALF      G   P+V +++ +I
Sbjct: 165 TLLTKGSRLGCCIEP--YAYNYLLNSLIAHGRAQDAVALFESWIQDGLYSPDVWSFNVVI 222

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            G+CR G+   AL L E M     +FG  C P+T+T+  ++DGLC+   V+K  E+  ++
Sbjct: 223 KGVCRMGNFQKALELVERMT----EFG--CSPDTITHNILVDGLCRAKQVNKGHEVLRRL 276

Query: 280 -KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
            +D    P+ VTY S+I G+C A    +A  +  +M++ G +P+ VT+NV+++   K   
Sbjct: 277 QRDGVCMPNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALD 336

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
           M+ A R+   +ILR   P+  TFS+L+DG+C  G+++ AK ++   + MG  H
Sbjct: 337 MESAVRMYRQLILRHCPPDVVTFSSLIDGYCRCGQLDDAKRIW---KEMGLHH 386



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 62/252 (24%), Positives = 111/252 (44%), Gaps = 32/252 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  +     K    +  +S++  +  +G  P+  TYN+LIN + K   +     +
Sbjct: 284 PNAVTYTSVISGYCKAGKMEDAMSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRM 343

Query: 165 LGR-ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             + ILR C  PD V F+SLI G C   ++ +A  ++ ++     +PNV T+S +I+ LC
Sbjct: 344 YRQLILRHC-PPDVVTFSSLIDGYCRCGQLDDAKRIWKEMGLHHIQPNVYTFSIIIHSLC 402

Query: 224 RTGHTIVALNLFEEMANG----------NGKFGVVCK--------------------PNT 253
           +   +  AL++  E+             N    ++CK                    P+ 
Sbjct: 403 KQNRSAEALDILRELNMRTDIAPQTFIYNPVIDILCKGGKVDEANLIVTDMKEKGCHPDK 462

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            TYT +I G C +G + +A  LF +M +    PD +T NS +     A   NE + +++ 
Sbjct: 463 YTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVLKAGMPNEVDQIMLI 522

Query: 314 MMDQGVQPDVVT 325
               G+    V+
Sbjct: 523 ASGHGLASQKVS 534


>gi|242047600|ref|XP_002461546.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
 gi|241924923|gb|EER98067.1| hypothetical protein SORBIDRAFT_02g004520 [Sorghum bicolor]
          Length = 532

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/299 (35%), Positives = 158/299 (52%), Gaps = 36/299 (12%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           R  +  + PD+ T+ ILI+C C  G ++ GF  LG+I+++    DAVAFT L++ LCA+ 
Sbjct: 3   RAGAKKVAPDIATFGILISCCCDAGCLNLGFAALGQIIKTGLRADAVAFTPLLRTLCAKK 62

Query: 192 RIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN-------- 242
           R  +A  +   ++   GC P+V +YSTL+ GLC       A  L   MA           
Sbjct: 63  RTSDAMNIVLRRMPELGCTPDVFSYSTLLKGLCAEKKCEEAAELIHMMAEDGDNCPPDVV 122

Query: 243 ---------------GK-FGVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
                          GK + + CK       PN VT  ++IDGLCK   +DKA+ +  QM
Sbjct: 123 SYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEAVLQQM 182

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
            D++I P+  TYNSLIHG+  +  W EA  +L EM   G +P+VVT+N+++D LCK+G  
Sbjct: 183 IDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFH 242

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTG---RVNHAKELFVSMESMGCKHTVFS 395
            EA  +   MI  G  P+ +T+ +L+ G+   G    +N+ K+L V    M   H  FS
Sbjct: 243 AEAREIFNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQ-NGMRSNHHTFS 300



 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++N L      +  +   + + K ++  G  P++ TYN+LI+C CK G  +    +
Sbjct: 189 PNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLCKSGFHAEAREI 248

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++S   PDA  + SL+ G   E  ++E   +   +   G + N  T+S  I   C+
Sbjct: 249 FNSMIQSGPKPDATTYGSLLHGYATEGNLVEMNNVKDLMVQNGMRSNHHTFSIEIYAYCK 308

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A   F +M     + G +  P+ VTYTT+IDGLCK G +D A   F QM D  +
Sbjct: 309 CGRLDEASLTFIKMQ----QLGFM--PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGL 362

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+++T+ +LIHGF     W +A  L  EMMD+G+ PDV  F  ++D L K GK+ EA +
Sbjct: 363 SPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQK 422

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L +LM   G  PN  +++T++ G+ + G V    +L   M  +G K T  ++
Sbjct: 423 LFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGLKPTAVTF 474



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 145/288 (50%), Gaps = 12/288 (4%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + S++ +     K        +LF ++   G+ P++ T N +I+  CK+  +     
Sbjct: 118 PPDVVSYSTVIHGFFKEGDVGKAYTLFCKMLDHGIPPNVVTCNSVIDGLCKVQAMDKAEA 177

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL +++     P+   + SLI G  +  +  EA  +  ++   G +PNV+TY+ LI+ LC
Sbjct: 178 VLQQMIDEHIMPNCTTYNSLIHGYLSSGQWTEAVRILKEMSRDGQRPNVVTYNMLIDCLC 237

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG---FVDKAKELFLQMK 280
           ++G    A  +F  M           KP+  TY +++ G   EG    ++  K+L +Q  
Sbjct: 238 KSGFHAEAREIFNSMIQSGP------KPDATTYGSLLHGYATEGNLVEMNNVKDLMVQ-- 289

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              +  +  T++  I+ +C     +EA+   I+M   G  PD+VT+  ++D LCK G++D
Sbjct: 290 -NGMRSNHHTFSIEIYAYCKCGRLDEASLTFIKMQQLGFMPDIVTYTTVIDGLCKIGRLD 348

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +A      MI  G++PN  TF+TL+ GF + G+   A+ELF  M   G
Sbjct: 349 DAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRG 396



 Score = 89.0 bits (219), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 58/224 (25%), Positives = 99/224 (44%), Gaps = 22/224 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L K    D  +S F ++   GL P++ T+  LI+ F   G+      +
Sbjct: 329 PDIVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEEL 388

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD   FT++I  L  E ++ EA  LF  +   G KPNV++Y+T+I+G   
Sbjct: 389 FYEMMDRGIPPDVTIFTAMIDRLFKEGKVTEAQKLFDLMPRAGAKPNVVSYNTMIHGYFI 448

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G     + L ++M        +  KP  VT+ T++DG+   G                +
Sbjct: 449 AGEVGEVMKLLDDM------LLIGLKPTAVTFNTLLDGMVSMG----------------L 486

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            PDV T  +LI   C      +   L  EM+ +  + D +T N+
Sbjct: 487 KPDVDTCKTLIDSCCEDGRIEDILTLFREMLGKADKTDTITENI 530


>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
 gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
          Length = 813

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 105/347 (30%), Positives = 175/347 (50%), Gaps = 35/347 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F+ M+  R   P L+++N +   L K +  D   ++ +++   G+
Sbjct: 229 EGDV-----NKACDLFNEMVQ-RGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGV 282

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD +TYN LI  +   G+      V  ++      PD V   SL+  LC   +I +A  
Sbjct: 283 LPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARD 342

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-----ANGNGKFGVVCK--- 250
           +F  +   G K ++ +Y  ++NG    G  +    LF  M     A  +  F V+ K   
Sbjct: 343 VFDSMAMKGQKTDIFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYA 402

Query: 251 ---------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
                                P+ VTY+T+I  LC+ G +D A E F QM D+ + P + 
Sbjct: 403 KCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSIS 462

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY+ LI GFC   D  +A  L+++MM++G++PD+  FN I++ LCK G++ +A  + +  
Sbjct: 463 TYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFT 522

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           I  G++PN   ++TLMDG+CL G++ +A  +F  M S G +  V  Y
Sbjct: 523 ISIGLHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAGIQPNVVVY 569



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/322 (32%), Positives = 168/322 (52%), Gaps = 17/322 (5%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG-- 137
           P EA  +FD +L+ + +P P    N     LA+              ++LF R++     
Sbjct: 43  PEEAHDLFDELLH-QATPVPGRQLNGFLAALARAPASAACRDGPALAVALFNRVSRAHGP 101

Query: 138 --LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
             L P L+TY IL++C  +  R        G++L++    D +  ++L++GLC   R  E
Sbjct: 102 RVLSPTLHTYGILMDCCTRAHRPKLTLAFFGQVLKTGLGIDTIMISNLLRGLCEAKRTAE 161

Query: 196 AA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           A   L  ++   GC P+V +Y  ++  LC    +  A  L   MA G    G VC PN V
Sbjct: 162 ALDILLHRMPHLGCVPDVFSYCIVLKSLCSDRKSGQADELLRMMAEG----GAVCLPNAV 217

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            Y T+IDG  KEG V+KA +LF +M  + I+PD+ TYN +++  C A   ++A  +L +M
Sbjct: 218 AYNTVIDGFFKEGDVNKACDLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQM 277

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +D+GV PD  T+N ++      G+  EA R+ + M  +G+ P+  T ++LM   C  G++
Sbjct: 278 VDKGVLPDNWTYNSLIYGYSSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKI 337

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+++F SM   G K  +FSY
Sbjct: 338 KDARDVFDSMAMKGQKTDIFSY 359



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 87/309 (28%), Positives = 148/309 (47%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  IF+ M   +   P + +++ +   L +    D  +  F ++   G+ P + TY+ 
Sbjct: 408 DRATIIFNEMRE-QGVEPDVVTYSTVIAALCRIGKMDDAVEKFNQMIDQGVAPSISTYHF 466

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++ +++     PD   F  +I  LC   R+M+A  +F    + G
Sbjct: 467 LIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIG 526

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV+ Y+TL++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 527 LHPNVMVYNTLMDGYCLVGKMENALRVFDVMVSAG------IQPNVVVYGTLVNGYCKVG 580

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF ++  K I P    YN ++HG   A     A     EM + G+  D  T++
Sbjct: 581 RIDEGLSLFREILHKGIKPSTTLYNIILHGLFQAGRTVPAKVKFHEMTESGIAMDRYTYS 640

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  + +T + ++ G     RV  AK+LF S+   
Sbjct: 641 IVLGGLFKNSCSDEAILLFKELHAMNVKIDITTLNIMIAGMFQIRRVEEAKDLFASISRS 700

Query: 388 GCKHTVFSY 396
           G   +V +Y
Sbjct: 701 GLVPSVVTY 709


>gi|356561776|ref|XP_003549154.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g12700, mitochondrial-like [Glycine max]
          Length = 567

 Score =  177 bits (449), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 111/340 (32%), Positives = 177/340 (52%), Gaps = 51/340 (15%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCF 152
           F  ML + P P  +  FNLLFG +AK++H+ T +SL K L+S G    D+ T NILINC 
Sbjct: 64  FHRMLTLNPFPC-IQDFNLLFGIVAKSQHFATAISLIKTLHSLGYEIADVCTLNILINCL 122

Query: 153 CKMGRVSHGFVVLG-----------------------------------------RILRS 171
           C++ + + GF VLG                                         ++++ 
Sbjct: 123 CRLRKTTLGFAVLGLMTKIGLEPTLVTLNTIANGLCIVNGLCKIGDTSGALESLKKMVKR 182

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC-RTGHTIV 230
              P+ V + +++ GLC    + EA  LF ++     +PNV+TY+ LI GLC   G    
Sbjct: 183 NLEPNVVVYNAILDGLCKRGLVGEALGLFYEMGVVNVEPNVVTYNCLIQGLCGEVGGWRE 242

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
            + LF EM     + G+V  P+  T++ +++G CKEG + +A+ +   M    +  +VVT
Sbjct: 243 GVGLFNEMV---AEKGIV--PDVQTFSILVNGFCKEGLLLRAESMVGFMIRIGVELNVVT 297

Query: 291 YNSLIHGFCYANDWNEANCLLIEMM--DQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           YNSLI G+C  N   EA  +   M+   +G  P VVT+N ++   CK  K+++A  LL  
Sbjct: 298 YNSLISGYCLRNRMEEAVRVFDLMVREGEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSE 357

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           M+ +G++P+  T+++L+ GF   G+   AKELF++M+  G
Sbjct: 358 MVGKGLDPDVFTWTSLIGGFFEVGKPLAAKELFITMKDQG 397



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/314 (30%), Positives = 172/314 (54%), Gaps = 15/314 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYN 146
           EA  +F Y + +    P + ++N L+ G   +   +   + LF  + +  G+ PD+ T++
Sbjct: 206 EALGLF-YEMGVVNVEPNVVTYNCLIQGLCGEVGGWREGVGLFNEMVAEKGIVPDVQTFS 264

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--K 204
           IL+N FCK G +     ++G ++R     + V + SLI G C  +R+ EA  +F  +  +
Sbjct: 265 ILVNGFCKEGLLLRAESMVGFMIRIGVELNVVTYNSLISGYCLRNRMEEAVRVFDLMVRE 324

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC P+V+TY++LI+G C+      A++L  EM  G G       P+  T+T++I G  
Sbjct: 325 GEGCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMV-GKG-----LDPDVFTWTSLIGGFF 378

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF--CYANDWNEANCLLIEMMDQGVQPD 322
           + G    AKELF+ MKD+   P + T   ++ G   C+ +  +EA  L   M   G+  D
Sbjct: 379 EVGKPLAAKELFITMKDQGQVPILQTCAVVLDGLYKCWLD--SEAMTLFRAMEKSGLDLD 436

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           +V +N+++D +CK GK+++A +LL  ++++G+  ++ T++ ++ G C  G ++ A+EL  
Sbjct: 437 IVIYNIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLR 496

Query: 383 SMESMGCKHTVFSY 396
            M+  GC     SY
Sbjct: 497 KMKENGCPPNKCSY 510



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 120/248 (48%), Gaps = 7/248 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  P + TYN LI+ +CK+ +V+    +L  ++     PD   +TSLI G     + + A
Sbjct: 327 GCLPSVVTYNSLIHGWCKVKKVNKAMSLLSEMVGKGLDPDVFTWTSLIGGFFEVGKPLAA 386

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             LF  +K  G  P + T + +++GL +      A+ LF  M        +V       Y
Sbjct: 387 KELFITMKDQGQVPILQTCAVVLDGLYKCWLDSEAMTLFRAMEKSGLDLDIV------IY 440

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             ++DG+CK G ++ A++L   +  K +  D  T+N +I G C     ++A  LL +M +
Sbjct: 441 NIMLDGMCKMGKLNDARKLLSFVLVKGLKIDSYTWNIMIKGLCREGLLDDAEELLRKMKE 500

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G  P+  ++NV +  L +   +  + + L++M  +G  P  +T + L+  F      ++
Sbjct: 501 NGCPPNKCSYNVFVQGLLRKYDISRSRKYLQIMKDKGF-PVDATTAELLIRFLSANEEDN 559

Query: 377 AKELFVSM 384
           A + F+ +
Sbjct: 560 AFQEFLQI 567


>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
 gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
          Length = 394

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 169/349 (48%), Gaps = 53/349 (15%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF  M++M+  P     + ++ G L K    D   S F+++  +G  PD  TY +
Sbjct: 31  NKALQIFHQMIDMKVKPDAFL-YTVVIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTV 89

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K  +   G  +   +L    +P+ V + +++ G C   RI +A +L  +LK  G
Sbjct: 90  LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 149

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+   YSTLI+GLC+      A  LF EMA G+ +       + + YT+ I GLCK G
Sbjct: 150 RSPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDVQ-------DVIVYTSFISGLCKAG 201

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ------- 320
            +D+AK + ++M +    PD V+YN +I+  C  N  +EA     E+MDQ ++       
Sbjct: 202 KLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAK----ELMDQAMERKCMPGV 257

Query: 321 ---------------------------------PDVVTFNVIMDELCKNGKMDEASRLLE 347
                                            P VVT++ ++D LCK  ++D+A  +L+
Sbjct: 258 PVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQ 317

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M   G  P+  T++ ++D FC  GR++ A+ELF  M   GC   V +Y
Sbjct: 318 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAY 366



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 147/284 (51%), Gaps = 8/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L +    +  L +F ++    + PD + Y ++I   CK+ ++      
Sbjct: 12  PTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 71

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++++S   PD V +T L+  L    +  +   +F ++ + G  P ++TY+T++NG C+
Sbjct: 72  FEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 131

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL+L   +  G G+      P+   Y+T+IDGLCK    ++A+ELF +M   ++
Sbjct: 132 AGRIDQALSLMRRL-KGTGR-----SPSGSLYSTLIDGLCKHDRHEEARELF-EMAAGDV 184

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DV+ Y S I G C A   +EA  + ++M++ G  PD V++NVI+  LCK+ ++ EA  
Sbjct: 185 Q-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKE 243

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L++  + R   P     + L+DG C + RV  A  +   M   G
Sbjct: 244 LMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAG 287



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 39/295 (13%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP------------ 140
           IF+ ML+   SP  +T   ++ G   K    D  LSL +RL  TG  P            
Sbjct: 106 IFEEMLSKGHSPELVTYATVVNG-YCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 164

Query: 141 ---------------------DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
                                D+  Y   I+  CK G++     V  +++ +   PD V+
Sbjct: 165 CKHDRHEEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVS 224

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +  +I  LC ++R+ EA  L  +     C P V   + L++GLC++     A  + E M 
Sbjct: 225 YNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERML 284

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
               +      P+ VTY+ +IDGLCK   +D A  +  +M+     PDVVTY ++I  FC
Sbjct: 285 EAGDR-----APSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTAIIDAFC 339

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
                +EA  L   M ++G   DVV +N+++   C+  K+DEA  ++E M  RG+
Sbjct: 340 KVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGI 394



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 63/183 (34%), Positives = 98/183 (53%), Gaps = 6/183 (3%)

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L  ++KA G  P ++T+ +LI  LC    T  AL +F +M +      +  KP+   YT 
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMID------MKVKPDAFLYTV 54

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I  LCK   +D A   F QM      PD VTY  L+H    A  W + + +  EM+ +G
Sbjct: 55  VIGHLCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKG 114

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             P++VT+  +++  CK G++D+A  L+  +   G +P+ S +STL+DG C   R   A+
Sbjct: 115 HSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHEEAR 174

Query: 379 ELF 381
           ELF
Sbjct: 175 ELF 177



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 57/120 (47%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I + ML      P + +++ +   L K    D    + +++   G  PD+ TY  
Sbjct: 274 EEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVVTYTA 333

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK+GR+     +  R+       D VA+  LI+G C  +++ EA A+  ++   G
Sbjct: 334 IIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRG 393



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 60/122 (49%)

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +MK   I P +VT+ SLI   C  N  N+A  +  +M+D  V+PD   + V++  LC
Sbjct: 1   LLGEMKAAGITPTIVTFGSLIRKLCELNFTNKALQIFHQMIDMKVKPDAFLYTVVIGHLC 60

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K  K+D A+   E M+  G  P+  T++ L+       +     ++F  M S G    + 
Sbjct: 61  KINKLDLAASYFEQMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELV 120

Query: 395 SY 396
           +Y
Sbjct: 121 TY 122


>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Vitis vinifera]
          Length = 1045

 Score =  177 bits (449), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 12/303 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      D    LF+ + S  + PD++TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    P+ V +T+LI       ++  A  LF  + + GC PNV+TY+ LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 225 TGHTIVALNLFEEMANGNGKF-----------GVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +G    A  ++  M  GN              G +  PN  TY  ++DGLCK   V +A+
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   M  +   P+ + Y++LI GFC     +EA  +  +M ++G  P+V T++ ++D L
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRL 716

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K+ ++D A ++L  M+     PN   ++ ++DG C  G+ + A  L   ME  GC   V
Sbjct: 717 FKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNV 776

Query: 394 FSY 396
            +Y
Sbjct: 777 VTY 779



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 147/310 (47%), Gaps = 25/310 (8%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD M+      P + ++  L     K +   +   LF+ + S G  P++ TY  LI+  C
Sbjct: 538 FDEMVR-DGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHC 596

Query: 154 KMGRVSHGFVVLGRILRSCFTPDA----------------VAFTSLIKGLCAESRIMEAA 197
           K G++     +  R+  +   PD                   + +L+ GLC   ++ EA 
Sbjct: 597 KSGQIEKACQIYARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTY 256
            L   +   GC+PN I Y  LI+G C+ G    A  +F +M+  G G       PN  TY
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYG-------PNVYTY 709

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           +++ID L K+  +D A ++  +M + +  P+V+ Y  +I G C     +EA  L+  M +
Sbjct: 710 SSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEE 769

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  P+VVT+  ++D   K GK+D+   L+  M  +G  PN  T+  L++  C  G ++ 
Sbjct: 770 KGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDD 829

Query: 377 AKELFVSMES 386
           A +L   M+ 
Sbjct: 830 AHQLLDEMKQ 839



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 39/280 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+++TY  L++  CK  +V     +L  +      P+ + + +LI G C   ++ EA  +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           FTK+   G  PNV TYS+LI+ L +     +AL +   M   +      C PN + YT +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS------CAPNVIIYTEM 747

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLCK G  D+A  L   M++K  +P+VVTY ++I GF  A   ++   L+ +M  +G 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELM--------------ILRGVN---------- 355
            P+ VT+ V+++  C  G +D+A +LL+ M              ++ G N          
Sbjct: 808 APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLL 867

Query: 356 ---------PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
                    P    +  L+D FC  GR+  A EL   M S
Sbjct: 868 DEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSS 907



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 158/347 (45%), Gaps = 22/347 (6%)

Query: 49  TAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS---PP 105
             + +E+L L  K+   L+  +  +  S   G   A    EA    D++  MR S   P 
Sbjct: 280 AGRWREALALIEKEEFKLDTVIYTQMIS---GLCEASLFEEAM---DFLSRMRSSSCIPN 333

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
            +T   LL GCL K +       +   + + G +P    +N LI+ +C+ G  S+ + +L
Sbjct: 334 VVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG------CKPNVITYSTLI 219
            ++      P  V +  LI G+C   ++     L    KA+G         N +  S L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
             LC  G    A ++  EM +     G +  P+T TY+ +I  LC    VD A  LF +M
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           K  ++ PDV TY  LI  FC      +A     EM+  G  P+VVT+  ++    K  KM
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             A+ L E+M+  G  PN  T++ L+DG C +G++  A +++  M  
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRG 613



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 142/368 (38%), Gaps = 85/368 (23%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     +    DT   + + ++ +G   D YT    ++  CK GR       
Sbjct: 230 PSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA--- 286

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY--------- 215
           L  I +  F  D V +T +I GLC  S   EA    +++++  C PNV+TY         
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346

Query: 216 --------------------------STLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                     ++LI+  CR+G    A  L ++M +        C
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG------C 400

Query: 250 KPNTVTYTTIIDG-----------------------------------------LCKEGF 268
           +P  V Y  +I G                                         LC  G 
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA  +  +M  K   PD  TY+ +I   C A+  + A  L  EM    V PDV T+ +
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK G + +A +  + M+  G  PN  T++ L+  +    +++ A ELF  M S G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 389 CKHTVFSY 396
           C   V +Y
Sbjct: 581 CIPNVVTY 588



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 143/360 (39%), Gaps = 79/360 (21%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV----- 164
            N+L     +   ++  L    RL   G  P   TYN L+  F +  R+   ++V     
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 165 ---------------------------LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
                                      L  I +  F  D V +T +I GLC  S   EA 
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAM 319

Query: 198 ALFTKLKAFGCKPNVITY-----------------------------------STLINGL 222
              +++++  C PNV+TY                                   ++LI+  
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAY 379

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE------GFVDKAKELF 276
           CR+G    A  L ++M +        C+P  V Y  +I G+C          ++ A++ +
Sbjct: 380 CRSGDYSYAYKLLKKMGDCG------CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAY 433

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M D ++  + V  ++L    C A  + +A  ++ EMM +G  PD  T++ ++  LC  
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            K+D A  L E M    V P+  T++ L+D FC  G +  A++ F  M   GC   V +Y
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 54/233 (23%), Positives = 102/233 (43%), Gaps = 11/233 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +     K    D  L L +++ + G  P+  TY +
Sbjct: 758 DEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  G +     +L  + ++ +      +  +I+G   E  I  +  L  ++    
Sbjct: 817 LINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENV 874

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  LI+  C+ G   +AL L +EM++           +   Y+++I+ L    
Sbjct: 875 AVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTS----YSAADKDLYSSLIESLSLAS 930

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA----NCLLIEMMD 316
            VDKA EL+  M  +   P++  +  L+ G    N W EA    +C+   M+D
Sbjct: 931 KVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEALQLSDCICQMMVD 983



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K    D    L   +   G  P++ TY  +I+ F K G+V     +
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + ++      P+ V +  LI   CA   + +A  L  ++K      ++  Y  +I G  R
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR 858

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD--K 282
               I++L L +E+A        V  P    Y  +ID  CK G ++ A EL  +M     
Sbjct: 859 --EFIISLGLLDEIAEN------VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTS 910

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
               D   Y+SLI     A+  ++A  L  +M+ +G  P++  F  ++  L +  + +EA
Sbjct: 911 YSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEA 970

Query: 343 SRL 345
            +L
Sbjct: 971 LQL 973


>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
          Length = 731

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +    D    L   +   GL P+L T+N ++N  CK G++     V
Sbjct: 223 PNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCKAGKMEDARKV 282

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    PD V++ +L+ G C      EA ++F ++   G  P+V+T+++LI+ +C+
Sbjct: 283 FDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCK 342

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A+ L  +M     +       N VT+T +IDG CK+GF+D A      MK   I
Sbjct: 343 AGNLERAVTLVRQMRERGLQM------NEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P VV YN+LI+G+C     +EA  LL EM  +G++PDVVT++ I+   CKN     A  
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFE 456

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+ +GV P+  T+S+L+   C   R++ A  LF +M  +G +   F+Y
Sbjct: 457 LNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTY 508



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 91/297 (30%), Positives = 159/297 (53%), Gaps = 17/297 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L+      +    F  + S G+ P++YTYNIL+   C  G       +
Sbjct: 154 PSVLAYNAVLLALSDAS-LTSARRFFDSMLSDGVAPNVYTYNILVRALCGRGHRKEALSI 212

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   P+ V + +L+        +  A  L   ++  G KPN++T+++++NG+C+
Sbjct: 213 LRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMREGGLKPNLVTFNSMVNGMCK 272

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F+EM     + G+   P+ V+Y T++ G CK G   +A  +F +M  K I
Sbjct: 273 AGKMEDARKVFDEMV----REGLA--PDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGI 326

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVT+ SLIH  C A +   A  L+ +M ++G+Q + VTF  ++D  CK G +D+A  
Sbjct: 327 MPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDA-- 384

Query: 345 LLELMILRG-----VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              L+ +RG     + P+   ++ L++G+C+ GR++ A+EL   ME+ G K  V +Y
Sbjct: 385 ---LLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTY 438



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN +   + K    +    +F  +   GL PD  +YN L+  +CK G       V
Sbjct: 258 PNLVTFNSMVNGMCKAGKMEDARKVFDEMVREGLAPDGVSYNTLVGGYCKAGCSHEALSV 317

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    PD V FTSLI  +C    +  A  L  +++  G + N +T++ LI+G C+
Sbjct: 318 FAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCK 377

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL     M           KP+ V Y  +I+G C  G +D+A+EL  +M+ K +
Sbjct: 378 KGFLDDALLAVRGMKQCR------IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 431

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+++I  +C   D + A  L  +M+++GV PD +T++ ++  LC   ++ +A  
Sbjct: 432 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHV 491

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + MI  G+ P+  T+++L+DG C  G V  A  L   M   G    V +Y
Sbjct: 492 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTY 543



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+    +P  + S+N L G   K       LS+F  +   G+ PD+ T+  L
Sbjct: 278 DARKVFDEMVREGLAPDGV-SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 336

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G +     ++ ++       + V FT+LI G C +  + +A      +K    
Sbjct: 337 IHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRI 396

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           KP+V+ Y+ LING C  G    A  L  EM A G        KP+ VTY+TII   CK  
Sbjct: 397 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKG-------LKPDVVTYSTIISAYCKNC 449

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A EL  QM +K + PD +TY+SLI   C     ++A+ L   M+  G+QPD  T+ 
Sbjct: 450 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYT 509

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            ++D  CK G ++ A  L + M+  GV P+  T+S L++G   + R   A++L 
Sbjct: 510 SLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLL 563



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 157/313 (50%), Gaps = 24/313 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M   +   P + +F  L   + K  + +  ++L +++   GL  +  T+  
Sbjct: 312 HEALSVFAEM-TQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQMRERGLQMNEVTFTA 370

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+ FCK G +    + + R ++ C   P  V + +LI G C   R+ EA  L  +++A 
Sbjct: 371 LIDGFCKKGFLDDALLAV-RGMKQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 429

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KP+V+TYST+I+  C+   T  A  L ++M     + GV+  P+ +TY+++I  LC E
Sbjct: 430 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQML----EKGVL--PDAITYSSLIRVLCGE 483

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +  A  LF  M    + PD  TY SLI G C   +   A  L  +M+  GV PDVVT+
Sbjct: 484 KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTY 543

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM---------------DGFCLT 371
           +V+++ L K+ +  EA +LL  +      P  + +  LM                GFC+ 
Sbjct: 544 SVLINGLSKSARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMK 603

Query: 372 GRVNHAKELFVSM 384
           G +N A +++ SM
Sbjct: 604 GLMNEADKVYQSM 616



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 146/295 (49%), Gaps = 21/295 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L          D    L   + + GL PD+ TY+ +I+ +CK       F +
Sbjct: 398 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L     PDA+ ++SLI+ LC E R+ +A  LF  +   G +P+  TY++LI+G C+
Sbjct: 458 NQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 517

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L ++M     K GV+  P+ VTY+ +I+GL K     +A++L  ++  ++ 
Sbjct: 518 EGNVESALSLHDKMV----KAGVL--PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEDP 571

Query: 285 NPDVVTYNSLIH---------------GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            P    Y++L+H               GFC     NEA+ +   M+D+    D   ++V+
Sbjct: 572 IPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVL 631

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +   C+ G + +A    + M+  G  PN+++  +L+ G    G V  A ++   +
Sbjct: 632 IHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFENGMVVEADQVIQQL 686



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/297 (23%), Positives = 118/297 (39%), Gaps = 44/297 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     K     +   L +++   G+ PD  TY+ LI   C   R+S   V+
Sbjct: 433 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCGEKRLSDAHVL 492

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    PD   +TSLI G C E  +  A +L  K+   G  P+V+TYS LINGL +
Sbjct: 493 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVESALSLHDKMVKAGVLPDVVTYSVLINGLSK 552

Query: 225 TGHTIVALNLF-----EEMANGNGKF-------------------------GVVCKPNTV 254
           +   + A  L      E+    N K+                         G++ + + V
Sbjct: 553 SARAMEAQQLLFKLYHEDPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKV 612

Query: 255 --------------TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                          Y+ +I G C+ G V KA     QM      P+  +  SLI G   
Sbjct: 613 YQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQGGFAPNSTSTISLIRGLFE 672

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                EA+ ++ ++++     D      ++D     G +D    +L  M   G+ P+
Sbjct: 673 NGMVVEADQVIQQLLNYCSLADAEASKALIDLNLNEGNVDAVLDVLHGMAKDGLLPS 729


>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
          Length = 1010

 Score =  177 bits (448), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 12/303 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      D    LF+ + S  + PD++TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    P+ V +T+LI       ++  A  LF  + + GC PNV+TY+ LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 225 TGHTIVALNLFEEMANGNGKF-----------GVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +G    A  ++  M  GN              G +  PN  TY  ++DGLCK   V +A+
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   M  +   P+ + Y++LI GFC     +EA  +  +M ++G  P+V T++ ++D L
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRL 716

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K+ ++D A ++L  M+     PN   ++ ++DG C  G+ + A  L   ME  GC   V
Sbjct: 717 FKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNV 776

Query: 394 FSY 396
            +Y
Sbjct: 777 VTY 779



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 24/299 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K +   +   LF+ + S G  P++ TY  LI+  CK G++     +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 165 LGRILRSCFTPDA----------------VAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
             R+  +   PD                   + +L+ GLC   ++ EA  L   +   GC
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           +PN I Y  LI+G C+ G    A  +F +M+  G G       PN  TY+++ID L K+ 
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYG-------PNVYTYSSLIDRLFKDK 720

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A ++  +M + +  P+V+ Y  +I G C     +EA  L+  M ++G  P+VVT+ 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++D   K GK+D+   L+  M  +G  PN  T+  L++  C  G ++ A +L   M+ 
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 39/280 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+++TY  L++  CK  +V     +L  +      P+ + + +LI G C   ++ EA  +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           FTK+   G  PNV TYS+LI+ L +     +AL +   M   +      C PN + YT +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS------CAPNVIIYTEM 747

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLCK G  D+A  L   M++K  +P+VVTY ++I GF  A   ++   L+ +M  +G 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELM--------------ILRGVN---------- 355
            P+ VT+ V+++  C  G +D+A +LL+ M              ++ G N          
Sbjct: 808 APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLL 867

Query: 356 ---------PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
                    P    +  L+D FC  GR+  A EL   M S
Sbjct: 868 DEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKXMSS 907



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/347 (28%), Positives = 158/347 (45%), Gaps = 22/347 (6%)

Query: 49  TAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS---PP 105
             + +E+L L  K+   L+  +  +  S   G   A    EA    D++  MR S   P 
Sbjct: 280 AGRWREALALIEKEEFKLDTVIYTQMIS---GLCEASLFEEAM---DFLSRMRSSSCIPN 333

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
            +T   LL GCL K +       +   + + G +P    +N LI+ +C+ G  S+ + +L
Sbjct: 334 VVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG------CKPNVITYSTLI 219
            ++      P  V +  LI G+C   ++     L    KA+G         N +  S L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
             LC  G    A ++  EM +     G +  P+T TY+ +I  LC    VD A  LF +M
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           K  ++ PDV TY  LI  FC      +A     EM+  G  P+VVT+  ++    K  KM
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             A+ L E+M+  G  PN  T++ L+DG C +G++  A +++  M  
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRG 613



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 142/368 (38%), Gaps = 85/368 (23%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     +    DT   + + ++ +G   D YT    ++  CK GR       
Sbjct: 230 PSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA--- 286

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY--------- 215
           L  I +  F  D V +T +I GLC  S   EA    +++++  C PNV+TY         
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346

Query: 216 --------------------------STLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                     ++LI+  CR+G    A  L ++M +        C
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG------C 400

Query: 250 KPNTVTYTTIIDG-----------------------------------------LCKEGF 268
           +P  V Y  +I G                                         LC  G 
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA  +  +M  K   PD  TY+ +I   C A+  + A  L  EM    V PDV T+ +
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK G + +A +  + M+  G  PN  T++ L+  +    +++ A ELF  M S G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 389 CKHTVFSY 396
           C   V +Y
Sbjct: 581 CIPNVVTY 588



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 143/360 (39%), Gaps = 79/360 (21%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV----- 164
            N+L     +   ++  L    RL   G  P   TYN L+  F +  R+   ++V     
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 165 ---------------------------LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
                                      L  I +  F  D V +T +I GLC  S   EA 
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAM 319

Query: 198 ALFTKLKAFGCKPNVITY-----------------------------------STLINGL 222
              +++++  C PNV+TY                                   ++LI+  
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAY 379

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE------GFVDKAKELF 276
           CR+G    A  L ++M +        C+P  V Y  +I G+C          ++ A++ +
Sbjct: 380 CRSGDYSYAYKLLKKMGDCG------CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAY 433

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M D ++  + V  ++L    C A  + +A  ++ EMM +G  PD  T++ ++  LC  
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            K+D A  L E M    V P+  T++ L+D FC  G +  A++ F  M   GC   V +Y
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/233 (24%), Positives = 98/233 (42%), Gaps = 10/233 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K    D    L   +   G  P++ TY  +I+ F K G+V     +
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + ++      P+ V +  LI   CA   + +A  L  ++K      ++  Y  +I G  R
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR 858

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD--K 282
               I++L L +E+A        V  P    Y  +ID  CK G ++ A EL   M     
Sbjct: 859 --EFIISLGLLDEIAEN------VAVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTS 910

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
               D   Y+SLI     A+  ++A  L  +M+ +G  P++  F  ++  L +
Sbjct: 911 YSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIR 963



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 7/215 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +     K    D  L L +++ + G  P+  TY +
Sbjct: 758 DEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  G +     +L  + ++ +      +  +I+G   E  I  +  L  ++    
Sbjct: 817 LINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENV 874

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  LI+  C+ G   +AL L + M++           +   Y+++I+ L    
Sbjct: 875 AVPIIPAYRILIDSFCKAGRLELALELHKXMSSCTS----YSAADKDLYSSLIESLSLAS 930

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            VDKA EL+  M  +   P++  +  L+ G    N
Sbjct: 931 KVDKAFELYADMIKRGGIPELSIFFYLVKGLIRIN 965


>gi|326489757|dbj|BAK01859.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 746

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 163/332 (49%), Gaps = 33/332 (9%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD M     SPP + ++  +          +  + L   + + GL  +   Y  +I   C
Sbjct: 278 FDEM----SSPPDVVTYGTMVHGYCVRGELENAVKLLDEMAAKGLESNATVYTSVIALLC 333

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+VS    VL  +       DAV FT++I G C++  +  A  LF +++  G   + +
Sbjct: 334 NKGQVSDALRVLEDMTMHGVALDAVVFTTVISGFCSKGDLAAARRLFEEMQKRGLAADRV 393

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK-------------- 250
           T++ LINGLCR G    A  + +EM +      VV         CK              
Sbjct: 394 THTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEM 453

Query: 251 ------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 PN VTYT + DGLCK+G V  A EL  +M +K +  +V TYNSLI+G C   + 
Sbjct: 454 VGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSLINGLCKFGNL 513

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            +A  ++ EM   G + DV T+  ++D LCK+G+ D A  +L+ M+ +G+ P+ +T++ L
Sbjct: 514 EQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVL 573

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+GFC++GRV   K+L   M     +  V +Y
Sbjct: 574 MNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTY 605



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 82/258 (31%), Positives = 139/258 (53%), Gaps = 6/258 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF+ +   GL  D  T+  LIN  C+ G +     VL  ++      D V +T LI G C
Sbjct: 379 LFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVLQEMVDKGLDVDVVTYTVLIDGYC 438

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               ++EA  +  ++      PNV+TY+ L +GLC+ G    A  L  EM N   +    
Sbjct: 439 KRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAANELLHEMCNKGLEL--- 495

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
              N  TY ++I+GLCK G +++A  +  +M+      DV TY +LI   C + +++ A+
Sbjct: 496 ---NVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAH 552

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +L EM+D+G++P + T+NV+M+  C +G+++   +LLE M+ + V PN  T+++LM  +
Sbjct: 553 NMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKNVRPNVVTYNSLMKQY 612

Query: 369 CLTGRVNHAKELFVSMES 386
           C+   +    E++  M S
Sbjct: 613 CIDKNMKSTTEIYKGMHS 630



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 161/320 (50%), Gaps = 16/320 (5%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLA-KTKHYDTVLSLFKRLNST 136
           +GD+ A     A  +F+ M     +   +T   L+ G C A + K  D VL   + +   
Sbjct: 370 KGDLAA-----ARRLFEEMQKRGLAADRVTHTALINGLCRAGELKEADRVL---QEMVDK 421

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL  D+ TY +LI+ +CK G +   F V   ++     P+ V +T+L  GLC +  +  A
Sbjct: 422 GLDVDVVTYTVLIDGYCKRGNMVEAFRVHNEMVGRRVAPNVVTYTALSDGLCKQGDVRAA 481

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  ++   G + NV TY++LINGLC+ G+   A+ +  EM     +  V       TY
Sbjct: 482 NELLHEMCNKGLELNVYTYNSLINGLCKFGNLEQAMRIMTEMEAAGHRTDVY------TY 535

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+ID LCK G  D+A  +  +M DK I P + TYN L++GFC +        LL  M++
Sbjct: 536 TTLIDTLCKSGEFDRAHNMLQEMLDKGIKPSIATYNVLMNGFCMSGRVEGGKKLLEWMLE 595

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + V+P+VVT+N +M + C +  M   + + + M  + V PN +T++ L+ G C    +  
Sbjct: 596 KNVRPNVVTYNSLMKQYCIDKNMKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKE 655

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A      M   G + T  SY
Sbjct: 656 ALYFHQEMIEKGLRLTASSY 675



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/278 (27%), Positives = 126/278 (45%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  R +P  +T +  L   L K         L   + + GL  ++YTYN L
Sbjct: 445 EAFRVHNEMVGRRVAPNVVT-YTALSDGLCKQGDVRAANELLHEMCNKGLELNVYTYNSL 503

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G +     ++  +  +    D   +T+LI  LC       A  +  ++   G 
Sbjct: 504 INGLCKFGNLEQAMRIMTEMEAAGHRTDVYTYTTLIDTLCKSGEFDRAHNMLQEMLDKGI 563

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP++ TY+ L+NG C +G       L E M   N       +PN VTY +++   C +  
Sbjct: 564 KPSIATYNVLMNGFCMSGRVEGGKKLLEWMLEKN------VRPNVVTYNSLMKQYCIDKN 617

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  + + P+  TYN LI G C A +  EA     EM+++G++    +++ 
Sbjct: 618 MKSTTEIYKGMHSQEVAPNENTYNILIKGHCKARNMKEALYFHQEMIEKGLRLTASSYSA 677

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++  L K  K  EA    + M   G+      +S  MD
Sbjct: 678 LIRLLNKKKKFSEARVFFDKMRNEGLTAEPDVYSFYMD 715


>gi|326533642|dbj|BAK05352.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 860

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 107/326 (32%), Positives = 163/326 (50%), Gaps = 19/326 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK--------TKHYDTVLSLFKRL--- 133
           ++ ++A  +FD +   + +P P  S N     LA+        T      L+LF R+   
Sbjct: 88  LSRDDAHHMFDELFR-QATPVPGRSLNGFLAALARATSSSACITDGPALALALFNRVCRE 146

Query: 134 --NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
              +    P   TYNIL++C C+  R   G  + G ILR+    D +   +L+K LC  +
Sbjct: 147 EAGTQVAVPTFCTYNILMDCCCRARRPDLGLALFGCILRTGLKMDQITANTLLKCLCYAN 206

Query: 192 RIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           R  EA   L  ++   GC PN ++YS ++  LC    +  AL+L + MA    K G  C 
Sbjct: 207 RTEEAVNVLLHRMSELGCVPNAVSYSIVLKALCDNSMSQRALDLLQMMA----KQGGACS 262

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+ V Y+T+I G   EG   KA  LF +M  + + PDVVTYN +I   C A   ++A  +
Sbjct: 263 PDVVAYSTVIHGFFNEGETGKACSLFHEMTRQGVKPDVVTYNLIIDALCKARAMDKAELV 322

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M   G QPD VT++ ++      G++ EA+++   M  RG+ PN  T ++ +   C 
Sbjct: 323 LRQMTTDGAQPDTVTYSCMIHGYATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCK 382

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            GR   A E F SM + G K  +FSY
Sbjct: 383 HGRSKEAAEFFDSMTAKGHKPDIFSY 408



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 107/331 (32%), Positives = 162/331 (48%), Gaps = 13/331 (3%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYM----LNMRPSPPPLTSFNLLFGCLAKT 120
           SL  FL    +++         P  A  +F+ +       + + P   ++N+L  C  + 
Sbjct: 111 SLNGFLAALARATSSSACITDGPALALALFNRVCREEAGTQVAVPTFCTYNILMDCCCRA 170

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVA 179
           +  D  L+LF  +  TGL  D  T N L+ C C   R      V+L R+      P+AV+
Sbjct: 171 RRPDLGLALFGCILRTGLKMDQITANTLLKCLCYANRTEEAVNVLLHRMSELGCVPNAVS 230

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           ++ ++K LC  S    A  L   +   G  C P+V+ YST+I+G    G T  A +LF E
Sbjct: 231 YSIVLKALCDNSMSQRALDLLQMMAKQGGACSPDVVAYSTVIHGFFNEGETGKACSLFHE 290

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M     + GV  KP+ VTY  IID LCK   +DKA+ +  QM      PD VTY+ +IHG
Sbjct: 291 MT----RQGV--KPDVVTYNLIIDALCKARAMDKAELVLRQMTTDGAQPDTVTYSCMIHG 344

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +       EA  +  EM  +G+ P++VT N  +  LCK+G+  EA+   + M  +G  P+
Sbjct: 345 YATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHGRSKEAAEFFDSMTAKGHKPD 404

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             ++ TL+ G+   G       LF SM+S G
Sbjct: 405 IFSYCTLLHGYASEGCFADMIGLFNSMKSNG 435



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/358 (28%), Positives = 171/358 (47%), Gaps = 22/358 (6%)

Query: 47  TTTAKLKESLRL--TVKDRASL------EQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
            T  +LKE+ ++   +K R  +        FL   CK             EA   FD M 
Sbjct: 346 ATLGRLKEAAKMFREMKKRGLIPNIVTCNSFLASLCKHG--------RSKEAAEFFDSM- 396

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             +   P + S+  L    A    +  ++ LF  + S G+  + + + ILI+ + K G V
Sbjct: 397 TAKGHKPDIFSYCTLLHGYASEGCFADMIGLFNSMKSNGIAANCHVFTILIHAYAKRGMV 456

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
               ++   + +   +PD V ++++I       R+ +A   F ++ A G +PN   YS++
Sbjct: 457 DDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMVARGIQPNTAVYSSI 516

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G C  G  + A  L  EM N       + +P+ V ++++I+ LCK+G V  A ++F  
Sbjct: 517 IQGFCMHGGLVKAKELVSEMINKG-----IPRPDIVFFSSVINSLCKDGRVMDAHDIFDL 571

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
             D    P V+T+NSLI G+C     ++A  +L  M   GV+PD+VT+N ++D   KNG+
Sbjct: 572 ATDIGERPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGR 631

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++   L   M  +GV PNT T+  ++ G    GR   A++ F  M   G   TV  Y
Sbjct: 632 INDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGTTVTVSIY 689



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/287 (27%), Positives = 151/287 (52%), Gaps = 10/287 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F +L    AK    D  + +F  +   G+ PD+ TY+ +I+ F +MGR++       +++
Sbjct: 443 FTILIHAYAKRGMVDDAMLIFTEMQQQGVSPDVVTYSTVISTFSRMGRLTDAMEKFNQMV 502

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                P+   ++S+I+G C    +++A  L +++   G  +P+++ +S++IN LC+ G  
Sbjct: 503 ARGIQPNTAVYSSIIQGFCMHGGLVKAKELVSEMINKGIPRPDIVFFSSVINSLCKDGRV 562

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F+ +A   G+     +P  +T+ ++IDG C  G +DKA ++   M+   + PD+
Sbjct: 563 MDAHDIFD-LATDIGE-----RPGVITFNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDI 616

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+L+ G+      N+   L  EM  +GV+P+ VT+ +++  L + G+   A +    
Sbjct: 617 VTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHE 676

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           MI  G     S +  ++ G C   R N A E  +  + +G  +  FS
Sbjct: 677 MIESGTTVTVSIYGIILGGLC---RNNCADEAIILFQKLGTMNVKFS 720



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 125/284 (44%), Gaps = 12/284 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+N     P +  F+ +   L K         +F      G  P + T+N LI+ +C +G
Sbjct: 536 MINKGIPRPDIVFFSSVINSLCKDGRVMDAHDIFDLATDIGERPGVITFNSLIDGYCLVG 595

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++   F +L  +      PD V + +L+ G     RI +   LF +++  G KPN +TY 
Sbjct: 596 KMDKAFKILDAMEVVGVEPDIVTYNTLLDGYFKNGRINDGLTLFREMQRKGVKPNTVTYG 655

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT---YTTIIDGLCKEGFVDKAK 273
            ++ GL R G T+ A   F EM              TVT   Y  I+ GLC+    D+A 
Sbjct: 656 IMLAGLFRAGRTVAARKKFHEMIESG---------TTVTVSIYGIILGGLCRNNCADEAI 706

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            LF ++   N+   +   N++I+         EA  L   +   G+ P+  T+ V++  L
Sbjct: 707 ILFQKLGTMNVKFSITILNTMINAMYKVQRKEEAKELFATISASGLLPNESTYGVMIINL 766

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            K+G +++A+ +   M   G+ P +   + ++      G +  A
Sbjct: 767 LKDGGVEDANNMFSSMEKSGIVPGSRLLNRIIRMLLEKGEIAKA 810



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 124/293 (42%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  IFD   ++   P  +T FN L          D    +   +   G+ PD+ TYN L
Sbjct: 564 DAHDIFDLATDIGERPGVIT-FNSLIDGYCLVGKMDKAFKILDAMEVVGVEPDIVTYNTL 622

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ + K GR++ G  +   + R    P+ V +  ++ GL    R + A   F ++   G 
Sbjct: 623 LDGYFKNGRINDGLTLFREMQRKGVKPNTVTYGIMLAGLFRAGRTVAARKKFHEMIESGT 682

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
              V  Y  ++ GLCR      A+ LF+++   N KF +          T+I+ + K   
Sbjct: 683 TVTVSIYGIILGGLCRNNCADEAIILFQKLGTMNVKFSIT------ILNTMINAMYKVQR 736

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++AKELF  +    + P+  TY  +I          +AN +   M   G+ P     N 
Sbjct: 737 KEEAKELFATISASGLLPNESTYGVMIINLLKDGGVEDANNMFSSMEKSGIVPGSRLLNR 796

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           I+  L + G++ +A   L  +  + +    ST S ++  F   G+     +L 
Sbjct: 797 IIRMLLEKGEIAKAGNYLSKVDGKRILLEASTTSLMLSLFSRKGKYQEDIKLL 849


>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
          Length = 996

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 155/303 (51%), Gaps = 12/303 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      D    LF+ + S  + PD++TY ILI+ FCK+G +      
Sbjct: 478 PDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKW 537

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R    P+ V +T+LI       ++  A  LF  + + GC PNV+TY+ LI+G C+
Sbjct: 538 FDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCK 597

Query: 225 TGHTIVALNLFEEMANGNGKF-----------GVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           +G    A  ++  M  GN              G +  PN  TY  ++DGLCK   V +A+
Sbjct: 598 SGQIEKACQIYARM-RGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEAR 656

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   M  +   P+ + Y++LI GFC     +EA  +  +M ++G  P+V T++ ++D L
Sbjct: 657 DLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRL 716

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K+ ++D A ++L  M+     PN   ++ ++DG C  G+ + A  L   ME  GC   V
Sbjct: 717 FKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNV 776

Query: 394 FSY 396
            +Y
Sbjct: 777 VTY 779



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 143/299 (47%), Gaps = 24/299 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K +   +   LF+ + S G  P++ TY  LI+  CK G++     +
Sbjct: 548 PNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQI 607

Query: 165 LGRILRSCFTPDA----------------VAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
             R+  +   PD                   + +L+ GLC   ++ EA  L   +   GC
Sbjct: 608 YARMRGNADIPDVDMYFKIDDGNIRDPNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGC 667

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           +PN I Y  LI+G C+ G    A  +F +M+  G G       PN  TY+++ID L K+ 
Sbjct: 668 EPNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYG-------PNVYTYSSLIDRLFKDK 720

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A ++  +M + +  P+V+ Y  +I G C     +EA  L+  M ++G  P+VVT+ 
Sbjct: 721 RLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYT 780

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++D   K GK+D+   L+  M  +G  PN  T+  L++  C  G ++ A +L   M+ 
Sbjct: 781 AMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQ 839



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 135/280 (48%), Gaps = 39/280 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+++TY  L++  CK  +V     +L  +      P+ + + +LI G C   ++ EA  +
Sbjct: 634 PNIFTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMV 693

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           FTK+   G  PNV TYS+LI+ L +     +AL +   M   +      C PN + YT +
Sbjct: 694 FTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLENS------CAPNVIIYTEM 747

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLCK G  D+A  L   M++K  +P+VVTY ++I GF  A   ++   L+ +M  +G 
Sbjct: 748 IDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGC 807

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELM--------------ILRGVN---------- 355
            P+ VT+ V+++  C  G +D+A +LL+ M              ++ G N          
Sbjct: 808 APNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFIISLGLL 867

Query: 356 ---------PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
                    P    +  L+D FC  GR+  A EL   M S
Sbjct: 868 DEIAENVAVPIIPAYRILIDSFCKAGRLELALELHKEMSS 907



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 158/345 (45%), Gaps = 22/345 (6%)

Query: 49  TAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS---PP 105
             + +E+L L  K+   L+  +  +  S   G   A    EA    D++  MR S   P 
Sbjct: 280 AGRWREALALIEKEEFKLDTVIYTQMIS---GLCEASLFEEAM---DFLSRMRSSSCIPN 333

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
            +T   LL GCL K +       +   + + G +P    +N LI+ +C+ G  S+ + +L
Sbjct: 334 VVTYRILLCGCLRK-RQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLL 392

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG------CKPNVITYSTLI 219
            ++      P  V +  LI G+C   ++     L    KA+G         N +  S L 
Sbjct: 393 KKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLA 452

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
             LC  G    A ++  EM +     G +  P+T TY+ +I  LC    VD A  LF +M
Sbjct: 453 RCLCGAGKFEKAYSIIREMMSK----GFI--PDTSTYSKVIGLLCNASKVDNAFLLFEEM 506

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           K  ++ PDV TY  LI  FC      +A     EM+  G  P+VVT+  ++    K  KM
Sbjct: 507 KSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKM 566

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             A+ L E+M+  G  PN  T++ L+DG C +G++  A +++  M
Sbjct: 567 SSANELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYARM 611



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 142/368 (38%), Gaps = 85/368 (23%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     +    DT   + + ++ +G   D YT    ++  CK GR       
Sbjct: 230 PSRLTYNALVRVFLEADRLDTAYLVHREMSDSGFNMDGYTLGCFVHLLCKAGRWREA--- 286

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY--------- 215
           L  I +  F  D V +T +I GLC  S   EA    +++++  C PNV+TY         
Sbjct: 287 LALIEKEEFKLDTVIYTQMISGLCEASLFEEAMDFLSRMRSSSCIPNVVTYRILLCGCLR 346

Query: 216 --------------------------STLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                     ++LI+  CR+G    A  L ++M +        C
Sbjct: 347 KRQLGRCKRILSMMITEGCYPSRRIFNSLIHAYCRSGDYSYAYKLLKKMGDCG------C 400

Query: 250 KPNTVTYTTIIDG-----------------------------------------LCKEGF 268
           +P  V Y  +I G                                         LC  G 
Sbjct: 401 QPGYVVYNILIGGICGNEKLPSLDVLELAEKAYGEMLDAHVVLNKVNVSNLARCLCGAGK 460

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA  +  +M  K   PD  TY+ +I   C A+  + A  L  EM    V PDV T+ +
Sbjct: 461 FEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTI 520

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK G + +A +  + M+  G  PN  T++ L+  +    +++ A ELF  M S G
Sbjct: 521 LIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEG 580

Query: 389 CKHTVFSY 396
           C   V +Y
Sbjct: 581 CIPNVVTY 588



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/360 (23%), Positives = 143/360 (39%), Gaps = 79/360 (21%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV----- 164
            N+L     +   ++  L    RL   G  P   TYN L+  F +  R+   ++V     
Sbjct: 200 LNVLIRKCCRNGLWNVALEELGRLKDLGYKPSRLTYNALVRVFLEADRLDTAYLVHREMS 259

Query: 165 ---------------------------LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
                                      L  I +  F  D V +T +I GLC  S   EA 
Sbjct: 260 DSGFNMDGYTLGCFVHLLCKAGRWREALALIEKEEFKLDTVIYTQMISGLCEASLFEEAM 319

Query: 198 ALFTKLKAFGCKPNVITY-----------------------------------STLINGL 222
              +++++  C PNV+TY                                   ++LI+  
Sbjct: 320 DFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKRILSMMITEGCYPSRRIFNSLIHAY 379

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE------GFVDKAKELF 276
           CR+G    A  L ++M +        C+P  V Y  +I G+C          ++ A++ +
Sbjct: 380 CRSGDYSYAYKLLKKMGDCG------CQPGYVVYNILIGGICGNEKLPSLDVLELAEKAY 433

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M D ++  + V  ++L    C A  + +A  ++ EMM +G  PD  T++ ++  LC  
Sbjct: 434 GEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNA 493

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            K+D A  L E M    V P+  T++ L+D FC  G +  A++ F  M   GC   V +Y
Sbjct: 494 SKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTY 553



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 7/220 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +     K    D  L L +++ + G  P+  TY +
Sbjct: 758 DEAYRLMS-MMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRV 816

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  G +     +L  + ++ +      +  +I+G   E  I  +  L  ++    
Sbjct: 817 LINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNREFII--SLGLLDEIAENV 874

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  LI+  C+ G   +AL L +EM++           +   Y+++I+ L    
Sbjct: 875 AVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTS----YSAADKDLYSSLIESLSLAS 930

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            VDKA EL+  M  +   P++  +  L+ G    N W EA
Sbjct: 931 KVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEA 970



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 60/243 (24%), Positives = 105/243 (43%), Gaps = 10/243 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K    D    L   +   G  P++ TY  +I+ F K G+V     +
Sbjct: 739 PNVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLEL 798

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + ++      P+ V +  LI   CA   + +A  L  ++K      ++  Y  +I G  R
Sbjct: 799 MRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGFNR 858

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD--K 282
               I++L L +E+A        V  P    Y  +ID  CK G ++ A EL  +M     
Sbjct: 859 --EFIISLGLLDEIAEN------VAVPIIPAYRILIDSFCKAGRLELALELHKEMSSCTS 910

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
               D   Y+SLI     A+  ++A  L  +M+ +G  P++  F  ++  L +  + +EA
Sbjct: 911 YSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPELSIFFYLVKGLIRINRWEEA 970

Query: 343 SRL 345
            +L
Sbjct: 971 LQL 973


>gi|15237662|ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g64320, mitochondrial; Flags: Precursor
 gi|9759408|dbj|BAB09863.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010486|gb|AED97869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 730

 Score =  177 bits (448), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 166/310 (53%), Gaps = 6/310 (1%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G +T    ++A  +   M+      P + ++N L     K       L +   + + G 
Sbjct: 361 HGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGC 420

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++Y+Y IL++ FCK+G++   + VL  +      P+ V F  LI   C E RI EA  
Sbjct: 421 KPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVE 480

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F ++   GCKP+V T+++LI+GLC       AL L  +M +     GVV   NTVTY T
Sbjct: 481 IFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISE----GVVA--NTVTYNT 534

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+   + G + +A++L  +M  +    D +TYNSLI G C A + ++A  L  +M+  G
Sbjct: 535 LINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDG 594

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             P  ++ N++++ LC++G ++EA    + M+LRG  P+  TF++L++G C  GR+    
Sbjct: 595 HAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGL 654

Query: 379 ELFVSMESMG 388
            +F  +++ G
Sbjct: 655 TMFRKLQAEG 664



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/330 (31%), Positives = 159/330 (48%), Gaps = 41/330 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + + M  M   P   T  +++ G L K    +    +  R+   G  PD  TY  
Sbjct: 269 NEALQLLEEMFLMGCVPDAETFNDVILG-LCKFDRINEAAKMVNRMLIRGFAPDDITYGY 327

Query: 148 LINCFCKMGRVS---------------------HGFVVLGR------ILRSCFT-----P 175
           L+N  CK+GRV                      HGFV  GR      +L    T     P
Sbjct: 328 LMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVP 387

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   + SLI G   E  +  A  +   ++  GCKPNV +Y+ L++G C+ G    A N+ 
Sbjct: 388 DVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVL 447

Query: 236 EEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            EM A+G        KPNTV +  +I   CKE  + +A E+F +M  K   PDV T+NSL
Sbjct: 448 NEMSADG-------LKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G C  ++   A  LL +M+ +GV  + VT+N +++   + G++ EA +L+  M+ +G 
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGS 560

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             +  T+++L+ G C  G V+ A+ LF  M
Sbjct: 561 PLDEITYNSLIKGLCRAGEVDKARSLFEKM 590



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/332 (30%), Positives = 152/332 (45%), Gaps = 31/332 (9%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  ML+ R  PP L +F ++          D+ LSL + +   G  P+   Y  LI+  
Sbjct: 204 VFYDMLS-RKIPPTLFTFGVVMKAFCAVNEIDSALSLLRDMTKHGCVPNSVIYQTLIHSL 262

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K  RV+    +L  +      PDA  F  +I GLC   RI EAA +  ++   G  P+ 
Sbjct: 263 SKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDD 322

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMAN--------------GNGK-------------- 244
           ITY  L+NGLC+ G    A +LF  +                 +G+              
Sbjct: 323 ITYGYLMNGLCKIGRVDAAKDLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTS 382

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           +G+V  P+  TY ++I G  KEG V  A E+   M++K   P+V +Y  L+ GFC     
Sbjct: 383 YGIV--PDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKI 440

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  +L EM   G++P+ V FN ++   CK  ++ EA  +   M  +G  P+  TF++L
Sbjct: 441 DEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSL 500

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + G C    + HA  L   M S G      +Y
Sbjct: 501 ISGLCEVDEIKHALWLLRDMISEGVVANTVTY 532



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/336 (29%), Positives = 152/336 (45%), Gaps = 46/336 (13%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC--- 153
           M N+    P   S+N++   L     +    ++F  + S  + P L+T+ +++  FC   
Sbjct: 172 MRNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVN 231

Query: 154 --------------------------------KMGRVSHGFVVLGRILRSCFTPDAVAFT 181
                                           K  RV+    +L  +      PDA  F 
Sbjct: 232 EIDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFN 291

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            +I GLC   RI EAA +  ++   G  P+ ITY  L+NGLC+ G    A +LF  +   
Sbjct: 292 DVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIP-- 349

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCY 300
                   KP  V + T+I G    G +D AK +   M     I PDV TYNSLI+G+  
Sbjct: 350 --------KPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWK 401

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                 A  +L +M ++G +P+V ++ +++D  CK GK+DEA  +L  M   G+ PNT  
Sbjct: 402 EGLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVG 461

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           F+ L+  FC   R+  A E+F  M   GCK  V+++
Sbjct: 462 FNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTF 497



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 142/279 (50%), Gaps = 9/279 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ + + M +     P    FN L     K       + +F+ +   G  PD+YT+N 
Sbjct: 441 DEAYNVLNEM-SADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNS 499

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C++  + H   +L  ++      + V + +LI        I EA  L  ++   G
Sbjct: 500 LISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
              + ITY++LI GLCR G    A +LFE+M  +G+        P+ ++   +I+GLC+ 
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHA-------PSNISCNILINGLCRS 612

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V++A E   +M  +   PD+VT+NSLI+G C A    +   +  ++  +G+ PD VTF
Sbjct: 613 GMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTF 672

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           N +M  LCK G + +A  LL+  I  G  PN  T+S L+
Sbjct: 673 NTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSILL 711



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 126/253 (49%), Gaps = 7/253 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF  M   +   P + +FN L   L +       L L + + S G+  +  TYN L
Sbjct: 477 EAVEIFREMPR-KGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTL 535

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN F + G +     ++  ++      D + + SLIKGLC    + +A +LF K+   G 
Sbjct: 536 INAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGH 595

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ I+ + LINGLCR+G    A+   +EM            P+ VT+ ++I+GLC+ G 
Sbjct: 596 APSNISCNILINGLCRSGMVEEAVEFQKEMVLRGST------PDIVTFNSLINGLCRAGR 649

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++    +F +++ + I PD VT+N+L+   C      +A  LL E ++ G  P+  T+++
Sbjct: 650 IEDGLTMFRKLQAEGIPPDTVTFNTLMSWLCKGGFVYDACLLLDEGIEDGFVPNHRTWSI 709

Query: 329 IMDELCKNGKMDE 341
           ++  +     +D 
Sbjct: 710 LLQSIIPQETLDR 722



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 53/171 (30%), Positives = 83/171 (48%), Gaps = 6/171 (3%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           SP    ++N L   L +    D   SLF+++   G  P   + NILIN  C+ G V    
Sbjct: 560 SPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAV 619

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                ++    TPD V F SLI GLC   RI +   +F KL+A G  P+ +T++TL++ L
Sbjct: 620 EFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTVTFNTLMSWL 679

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           C+ G    A  L +E        G V  PN  T++ ++  +  +  +D+ +
Sbjct: 680 CKGGFVYDACLLLDEGIED----GFV--PNHRTWSILLQSIIPQETLDRRR 724



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 41/171 (23%), Positives = 60/171 (35%), Gaps = 36/171 (21%)

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNI------------------------------ 284
            Y  +I  L   G       L +QMKD+ I                              
Sbjct: 113 VYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTRLMLEM 172

Query: 285 ------NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
                  P   +YN ++      N    A  +  +M+ + + P + TF V+M   C   +
Sbjct: 173 RNVYSCEPTFKSYNVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVMKAFCAVNE 232

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D A  LL  M   G  PN+  + TL+       RVN A +L   M  MGC
Sbjct: 233 IDSALSLLRDMTKHGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGC 283


>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
 gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
          Length = 831

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 156/289 (53%), Gaps = 8/289 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +N L   L K K      ++F  + S   F PD+ +Y+ILI+ FCK+  +     +  ++
Sbjct: 449 YNSLLNSLCKAKKVHQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQM 508

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P+   + + + GL  + RI +A  ++ ++ A GC P+VITYSTLI+G       
Sbjct: 509 IDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKH 568

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  LFE M +        C+PN VTY  ++ GLCKE   D+A ELF +M ++  +PD 
Sbjct: 569 DQAHELFETMISRG------CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDR 622

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY +L++GFC      +A  +  EM+ +G  PDVV +N ++    + GK  EA +L ++
Sbjct: 623 VTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQV 682

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES-MGCKHTVFSY 396
           M+ R   P+T + + ++DG     R++ A E+F  ME   GC   + +Y
Sbjct: 683 MVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 731



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 161/301 (53%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF IF  M++ R   P + S+++L     K         L+K++      P++ TYN 
Sbjct: 463 HQAFAIFSTMVSERSFVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 522

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +N   + GR++    V   ++ +  +PD + +++LI G     +  +A  LF  + + G
Sbjct: 523 FLNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRG 582

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PN +TY+ L++GLC+      A  LF +M          C P+ VTYTT++ G C  G
Sbjct: 583 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG------CDPDRVTYTTLLYGFCNVG 636

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A E+F +M  K  +PDVV YN L+ GF  A    EA  L   M+ +  +PD V+ N
Sbjct: 637 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEAKQLFQVMVSRQCKPDTVSHN 696

Query: 328 VIMDELCKNGKMDEASRLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +++D L K  ++D+A  + E M    G +P+  T+++L+ G C   R++ A ++F  ++ 
Sbjct: 697 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 756

Query: 387 M 387
           +
Sbjct: 757 L 757



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 100/317 (31%), Positives = 168/317 (52%), Gaps = 16/317 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           I   E  C+     N++PS     S   +   L K    D+ LSL + +   G  PD+ T
Sbjct: 355 IDKAEEACLEIAGRNIQPSSGTCHS---VIQELCKAGRVDSALSLLETMIKRGYCPDMAT 411

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA--FTSLIKGLCAESRIMEAAALFTK 202
           +++LIN  CK  ++      L  + R   +  +    + SL+  LC   ++ +A A+F+ 
Sbjct: 412 HSMLINELCKADKIQEAQEFLQGMDRKISSRSSSCFSYNSLLNSLCKAKKVHQAFAIFST 471

Query: 203 L---KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           +   ++F   P+V++YS LI+G C+      A  L+++M + N      C PN  TY   
Sbjct: 472 MVSERSF--VPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLN------CVPNVTTYNAF 523

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++GL ++G +  A+ ++ +M     +PDV+TY++LIHGF  A   ++A+ L   M+ +G 
Sbjct: 524 LNGLMRKGRIADAQGVYEEMVAAGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGC 583

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P+ VT+N ++  LCK  K DEA  L   M+ RG +P+  T++TL+ GFC  G++  A E
Sbjct: 584 RPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVE 643

Query: 380 LFVSMESMGCKHTVFSY 396
           +F  M S G    V +Y
Sbjct: 644 VFDEMVSKGHDPDVVAY 660



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/300 (26%), Positives = 135/300 (45%), Gaps = 11/300 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+ M+     P   T + +L       ++ D  +  F  +   G  P    Y  
Sbjct: 146 KQAGQVFEKMVAQGVVPNGFT-YAVLVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQK 204

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +  C    G+      V GR L      + +   +L+     + + +EA+ LF  +   G
Sbjct: 205 VTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSG 264

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCK 265
           CKP+   YS ++   C+  +   A  LF EMA       V  K   N V +T  + GLCK
Sbjct: 265 CKPDATIYSYMVLAHCKLENLDEAFKLFLEMA-------VESKAPLNNVAWTAFLSGLCK 317

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +++A E    M++ +++     Y+ LI     +   ++A    +E+  + +QP   T
Sbjct: 318 SGKIEQAFEACRTMQE-SLSSSQPVYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGT 376

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            + ++ ELCK G++D A  LLE MI RG  P+ +T S L++  C   ++  A+E    M+
Sbjct: 377 CHSVIQELCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMD 436



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/304 (20%), Positives = 129/304 (42%), Gaps = 13/304 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F + L  R     + ++N L   L + +       +F+++ + G+ P+ +TY +
Sbjct: 111 GEALTFFRW-LQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAV 169

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   C            G ++   F P +  +  + + L A  +  E + +F +     
Sbjct: 170 LVQSSCYERNSDEAVRFFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKR 229

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
               ++    L+         I A  LF  M          CKP+   Y+ ++   CK  
Sbjct: 230 VAVEMMLKKALLVNFVIQDKAIEASKLFRAMVKSG------CKPDATIYSYMVLAHCKLE 283

Query: 268 FVDKAKELFLQMKDKNINP-DVVTYNSLIHGFCYANDWNEA--NCLLIEMMDQGVQPDVV 324
            +D+A +LFL+M  ++  P + V + + + G C +    +A   C  ++      QP   
Sbjct: 284 NLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSSQP--- 340

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +++++  L ++G++D+A      +  R + P++ T  +++   C  GRV+ A  L  +M
Sbjct: 341 VYDMLIRLLIESGRIDKAEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSALSLLETM 400

Query: 385 ESMG 388
              G
Sbjct: 401 IKRG 404



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 71/149 (47%), Gaps = 2/149 (1%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K +  TY  ++D L +   + +A ++F +M  + + P+  TY  L+   CY  + +EA  
Sbjct: 126 KHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGFTYAVLVQSSCYERNSDEAVR 185

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
              EM+D+G +P    +  + + L   GK  E SR+    + + V         L+  F 
Sbjct: 186 FFGEMVDKGFKPSSTLYQKVTECLKATGKEGEFSRVFGRDLEKRVAVEMMLKKALLVNFV 245

Query: 370 LTGRVNHAKELFVSMESMGCK--HTVFSY 396
           +  +   A +LF +M   GCK   T++SY
Sbjct: 246 IQDKAIEASKLFRAMVKSGCKPDATIYSY 274



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 53/110 (48%), Gaps = 2/110 (1%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-G 137
           +G   A  P EA  +F  M++ R   P   S N++   L+K K  D  + +F+R+    G
Sbjct: 665 KGFFRAGKPGEAKQLFQVMVS-RQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 723

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
             PDL TYN LI   C   R+S    V   I R   +PD  AF  L++ +
Sbjct: 724 CSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAI 773



 Score = 45.8 bits (107), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 44/91 (48%)

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
           +  D  EA      +  +  + DV T+N ++D+L ++  + +A ++ E M+ +GV PN  
Sbjct: 106 HLRDGGEALTFFRWLQARNFKHDVFTYNCLLDKLIRHRDLKQAGQVFEKMVAQGVVPNGF 165

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           T++ L+   C     + A   F  M   G K
Sbjct: 166 TYAVLVQSSCYERNSDEAVRFFGEMVDKGFK 196


>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
 gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
           thaliana]
 gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
 gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 103/307 (33%), Positives = 157/307 (51%), Gaps = 11/307 (3%)

Query: 94  FDYM----LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +DY+    +NM  SP  L SFNL+   L K +  D  + +F+ +      PD YTY  L+
Sbjct: 171 YDYVVNSNMNMNISPNGL-SFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLM 229

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK  R+    ++L  +     +P  V +  LI GLC +  +     L   +   GC 
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCV 289

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN +TY+TLI+GLC  G    A++L E M +        C PN VTY T+I+GL K+   
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK------CIPNDVTYGTLINGLVKQRRA 343

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A  L   M+++  + +   Y+ LI G        EA  L  +M ++G +P++V ++V+
Sbjct: 344 TDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVL 403

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LC+ GK +EA  +L  MI  G  PN  T+S+LM GF  TG    A +++  M+  GC
Sbjct: 404 VDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGC 463

Query: 390 KHTVFSY 396
               F Y
Sbjct: 464 SRNKFCY 470



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 169/345 (48%), Gaps = 16/345 (4%)

Query: 57  RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           R+ +++R  +E+      ++ G+  +    P++A  +F  M++       + SFN +   
Sbjct: 102 RIRLENRVIIERSFIVVFRAYGKAHL----PDKAVDLFHRMVDEFRCKRSVKSFNSVLNV 157

Query: 117 LAKTKHYDTVLSLFKRLNSTGL----FPDLYTYNILINCFCKMGRVSHGFVVL-GRILRS 171
           +     Y   L  +  + ++ +     P+  ++N++I   CK+  V     V  G   R 
Sbjct: 158 IINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERK 217

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           C  PD   + +L+ GLC E RI EA  L  ++++ GC P+ + Y+ LI+GLC+ G     
Sbjct: 218 CL-PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRV 276

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             L + M      F   C PN VTY T+I GLC +G +DKA  L  +M      P+ VTY
Sbjct: 277 TKLVDNM------FLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTY 330

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            +LI+G        +A  LL  M ++G   +   ++V++  L K GK +EA  L   M  
Sbjct: 331 GTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAE 390

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +G  PN   +S L+DG C  G+ N AKE+   M + GC    ++Y
Sbjct: 391 KGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTY 435



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 152/297 (51%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M +   SP P+  +N+L   L K      V  L   +   G  P+  TYN 
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNT 297

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  G++     +L R++ S   P+ V + +LI GL  + R  +A  L + ++  G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N   YS LI+GL + G    A++L+ +MA         CKPN V Y+ ++DGLC+EG
Sbjct: 358 YHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKG------CKPNIVVYSVLVDGLCREG 411

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++AKE+  +M      P+  TY+SL+ GF       EA  +  EM   G   +   ++
Sbjct: 412 KPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYS 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           V++D LC  G++ EA  +   M+  G+ P+T  +S+++ G C  G ++ A +L+  M
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEM 528



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 157/321 (48%), Gaps = 17/321 (5%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+T +T      + D M  ++   P   ++N L   L      D  +SL +R+ S+  
Sbjct: 270 KGDLTRVTK-----LVDNMF-LKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKC 323

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TY  LIN   K  R +    +L  +    +  +   ++ LI GL  E +  EA +
Sbjct: 324 IPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMS 383

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYT 257
           L+ K+   GCKPN++ YS L++GLCR G    A  +   M A+G       C PN  TY+
Sbjct: 384 LWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIASG-------CLPNAYTYS 436

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           +++ G  K G  ++A +++ +M     + +   Y+ LI G C      EA  +  +M+  
Sbjct: 437 SLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTI 496

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR---GVNPNTSTFSTLMDGFCLTGRV 374
           G++PD V ++ I+  LC  G MD A +L   M+ +      P+  T++ L+DG C+   +
Sbjct: 497 GIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDI 556

Query: 375 NHAKELFVSMESMGCKHTVFS 395
           + A +L  SM   GC   V +
Sbjct: 557 SRAVDLLNSMLDRGCDPDVIT 577



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 149/292 (51%), Gaps = 30/292 (10%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +++L   L K    +  +SL++++   G  P++  Y++L++  C+ G+ +    +L R++
Sbjct: 365 YSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMI 424

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S   P+A  ++SL+KG        EA  ++ ++   GC  N   YS LI+GLC  G   
Sbjct: 425 ASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVK 484

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---KDKNINP 286
            A+ ++ +M        +  KP+TV Y++II GLC  G +D A +L+ +M   ++    P
Sbjct: 485 EAMMVWSKM------LTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD--------------- 331
           DVVTYN L+ G C   D + A  LL  M+D+G  PDV+T N  ++               
Sbjct: 539 DVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCDPDVITCNTFLNTLSEKSNSCDKGRSF 598

Query: 332 ------ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
                  L K  ++  A  ++E+M+ + + P TST++ ++   C   ++N A
Sbjct: 599 LEELVVRLLKRQRVSGACTIVEVMLGKYLAPKTSTWAMIVREICKPKKINAA 650


>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
          Length = 514

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 84/221 (38%), Positives = 135/221 (61%), Gaps = 6/221 (2%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
            + V FT+L+ GLC E R+++A AL  ++   G +P+ +TY T++NG+C+ G T+ ALN+
Sbjct: 8   ANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALNM 67

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             +M           K N V Y+ I+D LCK+G   KA+ +F +M +K I P+V+TYN +
Sbjct: 68  LRKMDESQ------IKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCM 121

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G+C    W++A  LL +M+++ + PDVVTF+ +++   K GK+  A  L   M+ R +
Sbjct: 122 IDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNI 181

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            P T T+S+++DGFC   R+  AK +F  M S GC   + +
Sbjct: 182 FPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIIT 222



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 166/332 (50%), Gaps = 40/332 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +         +     L + +    + PD+ T++ LIN F K G+VS    +
Sbjct: 113 PNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEEL 172

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR    P  + ++S+I G C  SR+ +A  +F  + + GC P++IT +TLI+G CR
Sbjct: 173 YREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCR 232

Query: 225 T-----------GHTIVALNLFEEM-ANG-----------------NGK-------FGVV 248
                       G+  VA +LF+EM +NG                 NGK       F V 
Sbjct: 233 AKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVF 292

Query: 249 CKP----NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            K     +T T   II+G+CK   VD+A +LF  +    +  DVVTYN LI  F    ++
Sbjct: 293 QKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNF 352

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  + +EM+ +G+ P  VT+N ++D  CK  +++EA ++++ M+  G +P+  TFSTL
Sbjct: 353 LRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTL 412

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + G+C  GRV+   ELF  M   G      +Y
Sbjct: 413 IKGYCKAGRVDDGLELFSEMCQRGLVADTITY 444



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 146/265 (55%), Gaps = 17/265 (6%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
            TG   ++ T+  L+N  C+ GRV     ++ R++     PDAV + +++ G+C     +
Sbjct: 3   ETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTV 62

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
            A  +  K+     K NV+ YS +++ LC+ G+ I A N+F EM +  G F     PN +
Sbjct: 63  SALNMLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEM-HEKGIF-----PNVL 116

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY  +IDG C  G    A++L   M ++NI+PDVVT+++LI+ F      + A  L  EM
Sbjct: 117 TYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREM 176

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD-------- 366
           + + + P  +T++ ++D  CK+ ++++A  + +LM+ +G +P+  T +TL+D        
Sbjct: 177 LRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRH 236

Query: 367 ---GFCLTGRVNHAKELFVSMESMG 388
              GFC  G VN A++LF  M S G
Sbjct: 237 LIHGFCQVGNVNVAQDLFQEMISNG 261



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 159/333 (47%), Gaps = 40/333 (12%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  + +F  L   L +       L+L  R+   G  PD  TY  ++N  CK+G       
Sbjct: 7   PANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGDTVSALN 66

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L ++  S    + V +++++  LC +   ++A  +FT++   G  PNV+TY+ +I+G C
Sbjct: 67  MLRKMDESQIKANVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYC 126

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV-----------------------------CKPNTV 254
             G    A  L  +M   N    VV                               P T+
Sbjct: 127 SYGKWSDAEQLLRDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTI 186

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS-----------LIHGFCYAND 303
           TY+++IDG CK   ++ AK +F  M  K  +PD++T N+           LIHGFC   +
Sbjct: 187 TYSSMIDGFCKHSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGN 246

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            N A  L  EM+  GV PD+VT N ++  LC+NGK+++A  + ++     ++ +T+T + 
Sbjct: 247 VNVAQDLFQEMISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNI 306

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++G C   +V+ A +LF S+   G +  V +Y
Sbjct: 307 IINGMCKGNKVDEAWDLFNSLPVNGVETDVVTY 339



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/290 (29%), Positives = 151/290 (52%), Gaps = 22/290 (7%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKH----------YDTVLSLFKRLNSTGLFPDL 142
           +FD M++   SP  +T   L+ GC    +H           +    LF+ + S G+ PD+
Sbjct: 207 MFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDI 266

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T N L+   C+ G++     +     +S    D      +I G+C  +++ EA  LF  
Sbjct: 267 VTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNS 326

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTI 259
           L   G + +V+TY+ LI    + G+ + A +++ EM         +CK   P+TVTY ++
Sbjct: 327 LPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEM---------LCKGIIPSTVTYNSM 377

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +DG CK+  +++A+++   M  +  +PDVVT+++LI G+C A   ++   L  EM  +G+
Sbjct: 378 VDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLELFSEMCQRGL 437

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
             D +T+N ++   CK G ++ A  + E M+  GV P+T TF +++ G C
Sbjct: 438 VADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLC 487



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 52/326 (15%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K  ++    ++F  ++  G+FP++ TYN +I+ +C  G+ S    +L  ++     PD
Sbjct: 90  LCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLLRDMIERNIDPD 149

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V F++LI     E ++  A  L+ ++      P  ITYS++I+G C+      A ++F+
Sbjct: 150 VVTFSALINAFVKEGKVSGAEELYREMLRRNIFPTTITYSSMIDGFCKHSRLEDAKHMFD 209

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKE-----------GFVDKAKELFLQMKDKNIN 285
            M +        C P+ +T  T+IDG C+            G V+ A++LF +M    ++
Sbjct: 210 LMVSKG------CSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVS 263

Query: 286 PDVVTYNSL-----------------------------------IHGFCYANDWNEANCL 310
           PD+VT N+L                                   I+G C  N  +EA  L
Sbjct: 264 PDIVTCNTLLAGLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDL 323

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
              +   GV+ DVVT+N+++    K G    A  +   M+ +G+ P+T T+++++DGFC 
Sbjct: 324 FNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCK 383

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             R+  A+++  SM S GC   V ++
Sbjct: 384 QNRLEEARQMVDSMVSEGCSPDVVTF 409



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 7/260 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F  M++   SP  +T   LL G L +    +  L +FK    + +  D  T NI
Sbjct: 248 NVAQDLFQEMISNGVSPDIVTCNTLLAG-LCENGKLEKALEMFKVFQKSKMDLDTATCNI 306

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK  +V   + +   +  +    D V +  LI     E   + A  ++ ++   G
Sbjct: 307 IINGMCKGNKVDEAWDLFNSLPVNGVETDVVTYNILIGVFVKEGNFLRAEDIYLEMLCKG 366

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+++++G C+      A  + + M +        C P+ VT++T+I G CK G
Sbjct: 367 IIPSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEG------CSPDVVTFSTLIKGYCKAG 420

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD   ELF +M  + +  D +TYN+LIHGFC   D N A  +  EM+  GV PD +TF 
Sbjct: 421 RVDDGLELFSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFR 480

Query: 328 VIMDELCKNGKMDEASRLLE 347
            ++  LC   ++ +   +LE
Sbjct: 481 SMLAGLCTKAELQKGLTMLE 500



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 61/134 (45%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +     K    +    +   + S G  PD+ T++ LI  +CK GRV  G  +
Sbjct: 369 PSTVTYNSMVDGFCKQNRLEEARQMVDSMVSEGCSPDVVTFSTLIKGYCKAGRVDDGLEL 428

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +     D + + +LI G C    +  A  +F ++ + G  P+ IT+ +++ GLC 
Sbjct: 429 FSEMCQRGLVADTITYNALIHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCT 488

Query: 225 TGHTIVALNLFEEM 238
                  L + E++
Sbjct: 489 KAELQKGLTMLEDL 502



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M++   SP  +T F+ L     K    D  L LF  +   GL  D  TYN L
Sbjct: 389 EARQMVDSMVSEGCSPDVVT-FSTLIKGYCKAGRVDDGLELFSEMCQRGLVADTITYNAL 447

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           I+ FCK+G ++    +   ++ S   PD + F S++ GLC ++ + +   +   L+
Sbjct: 448 IHGFCKVGDLNGAQDIFEEMVSSGVCPDTITFRSMLAGLCTKAELQKGLTMLEDLQ 503



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 44/83 (53%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M++ G   +VVTF  +M+ LC+ G++ +A  L++ M+  G  P+  T+ T+++G C  G 
Sbjct: 1   MVETGCPANVVTFTTLMNGLCREGRVLQALALVDRMVEEGHQPDAVTYGTIVNGMCKLGD 60

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A  +   M+    K  V  Y
Sbjct: 61  TVSALNMLRKMDESQIKANVVIY 83


>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
 gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
          Length = 569

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 153/286 (53%), Gaps = 10/286 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++  L   L+K       + + + + S    PD  T  +++   C   RV     
Sbjct: 146 PPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDARE 205

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF-TKLKAFGCKPNVITYSTLINGL 222
           ++  +L      +A+ +++L+ GLC   R+ EA AL   ++   G  P+++TYST+I+GL
Sbjct: 206 LVEEMLHRGMAANAITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGL 265

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A+++FEEM+         C P  +TY ++I G C+ G +D+A  L  +M D 
Sbjct: 266 CKAGRLRDAVDIFEEMS---------CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDD 316

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N  PDV+TY +L+  FC     ++A  L  +M+   + PDVVTF  ++D LC  G+M++A
Sbjct: 317 NCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDA 376

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             LLE +  RG  P   T++ ++DG+C + +V  A+EL     S G
Sbjct: 377 LELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVADFRSRG 422



 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 100/312 (32%), Positives = 160/312 (51%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +   M++ R  P   T+  ++   L      D    L + +   G+  +  TY+ 
Sbjct: 166 RDAVQVLQEMVSARHVPDN-TTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSA 224

Query: 148 LINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  CK  R+     ++LG + R  FTPD V ++++I GLC   R+ +A  +F ++   
Sbjct: 225 LVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMS-- 282

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C P  ITY++LI G CR G    A+ L  +M + N      C P+ +TYTT++   CK 
Sbjct: 283 -CAPTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDN------CAPDVITYTTLMSAFCKM 335

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A ELF QM    ++PDVVT+ SL+ G C      +A  LL E+  +G  P + T+
Sbjct: 336 GRLDDAYELFQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 395

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK+ ++ +A  L+     RG  PNT T++ L+ G C  GR + A +    + S
Sbjct: 396 NCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNS 455

Query: 387 MG--CKHTVFSY 396
            G  C  +V  Y
Sbjct: 456 EGGPCPTSVAMY 467



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 108/344 (31%), Positives = 165/344 (47%), Gaps = 50/344 (14%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +FD M  +  +    T +NL+   L K +  D  + L   + S G+ P    +N++I
Sbjct: 65  AMALFDKMAEL-GAVNHTTYYNLIHP-LCKARLLDEAMGLLLDMKSRGMNPGTLLHNVVI 122

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG----------------------- 186
              C+ GR+ H   V  R +     PD + +T L+ G                       
Sbjct: 123 GGLCRAGRLRHALGVY-RQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQEMVSARHV 181

Query: 187 ------------LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH--TIVAL 232
                       LC   R+ +A  L  ++   G   N ITYS L++GLC+       VAL
Sbjct: 182 PDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCERLDEAVAL 241

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L E    G         P+ VTY+T+IDGLCK G +  A ++F +M   +  P  +TYN
Sbjct: 242 LLGEVTRRG-------FTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM---SCAPTAITYN 291

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI G+C A D +EA  LL +M+D    PDV+T+  +M   CK G++D+A  L + M+  
Sbjct: 292 SLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVAN 351

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++P+  TF++L+DG C  GR+  A EL   +   GC  T+++Y
Sbjct: 352 KLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTY 395



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 149/303 (49%), Gaps = 11/303 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +    +  R   P + +++ +   L K       + +F+ ++     P   TYN 
Sbjct: 236 DEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEMSCA---PTAITYNS 292

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  +C+ G +     +LG+++     PD + +T+L+   C   R+ +A  LF ++ A  
Sbjct: 293 LIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK 352

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+T+++L++GLC  G    AL L EE+          C P   TY  ++DG CK  
Sbjct: 353 LSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRG------CPPTIYTYNCVVDGYCKSN 406

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVT 325
            V KA+EL    + +   P+ VTYN L+ G C A   ++A   L ++  +G      V  
Sbjct: 407 QVRKAEELVADFRSRGFVPNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAM 466

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           + +I+D LC++G+ D+A +  E MI RG  P  +TF+T++   C   +   A EL   M 
Sbjct: 467 YAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMI 526

Query: 386 SMG 388
             G
Sbjct: 527 KYG 529



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 134/279 (48%), Gaps = 10/279 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L G   +    D  + L  ++      PD+ TY  L++ FCKMGR+   + +
Sbjct: 285 PTAITYNSLIGGYCRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYEL 344

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++ +  +PD V FTSL+ GLC E R+ +A  L  ++   GC P + TY+ +++G C+
Sbjct: 345 FQQMVANKLSPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCK 404

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A    EE+       G V  PNTVTY  ++ G C+ G  D+A +   Q+  +  
Sbjct: 405 SNQVRKA----EELVADFRSRGFV--PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEG- 457

Query: 285 NP---DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
            P    V  Y  ++   C     ++A     EM+ +G  P   TF  ++  LCK  +  +
Sbjct: 458 GPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMIQRGYVPAAATFATVVFALCKAHQPQQ 517

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           A  LLE MI  G  P   T   ++  +C  G +  A EL
Sbjct: 518 AHELLEEMIKYGHTPGPGTCDAVVSAYCRAGMIQKADEL 556



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 114/251 (45%), Gaps = 42/251 (16%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF-TKLKAFGCKPNVITYSTLINGLCRTG 226
           +L + +  D+  F  +++GL A +++     L   +++  G  P+ +  +T++  LC   
Sbjct: 1   MLDAGYPSDSSTFAVVLRGLHASAKLRHLGPLLLDEIRDRGLSPDPVELNTILAELCDAR 60

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN- 285
            T  A+ LF++MA    + G V   N  TY  +I  LCK   +D+A  L L MK + +N 
Sbjct: 61  DTTTAMALFDKMA----ELGAV---NHTTYYNLIHPLCKARLLDEAMGLLLDMKSRGMNP 113

Query: 286 ---------------------------------PDVVTYNSLIHGFCYANDWNEANCLLI 312
                                            PD +TY  L+HG   A    +A  +L 
Sbjct: 114 GTLLHNVVIGGLCRAGRLRHALGVYRQMNDAHPPDFLTYTKLVHGLSKAGRLRDAVQVLQ 173

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM+     PD  T  V++  LC   ++D+A  L+E M+ RG+  N  T+S L+DG C   
Sbjct: 174 EMVSARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANAITYSALVDGLCKCE 233

Query: 373 RVNHAKELFVS 383
           R++ A  L + 
Sbjct: 234 RLDEAVALLLG 244



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/136 (22%), Positives = 56/136 (41%), Gaps = 2/136 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGF 162
           P   ++N+L     +    D  L    +LNS G      +  Y I+++  C+ GR     
Sbjct: 425 PNTVTYNILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAV 484

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +++  + P A  F +++  LC   +  +A  L  ++  +G  P   T   +++  
Sbjct: 485 QFYEEMIQRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYGHTPGPGTCDAVVSAY 544

Query: 223 CRTGHTIVALNLFEEM 238
           CR G    A  L  E+
Sbjct: 545 CRAGMIQKADELASEL 560


>gi|255660816|gb|ACU25577.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
          Length = 418

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 99/280 (35%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEDSLECGYPASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPT 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           AV+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF 
Sbjct: 171 AVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD VT+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 140/256 (54%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   SFN L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++ +   +
Sbjct: 169 PTAVSFNTLMNGYIRLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDYANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ VTYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 289 KGDLKQAQDLIDEMSMKG------LKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++P++ T+ +I++E CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           L++ M   G  P+  T
Sbjct: 403 LMKEMQRDGYVPSVVT 418



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P   ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEIKLAQSVFDAITKWGLRPTAVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++  A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDYANELFNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD VTY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKVTYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411


>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
 gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
          Length = 509

 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 169/349 (48%), Gaps = 53/349 (15%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF  M++M+  P     + ++ G L K    D   S F+R+  +G  PD  TY +
Sbjct: 104 DKALQIFHQMIDMKVKPDAFL-YTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTV 162

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K  +   G  +   +L    +P+ V + +++ G C   RI +A +L  +LK  G
Sbjct: 163 LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+   YSTLI+GLC+      A  LF EMA G+ +       + + YT+ I GLCK G
Sbjct: 223 RSPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDVQ-------DVIVYTSFISGLCKAG 274

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ------- 320
            +D+AK + ++M +    PD V+YN +I+  C  N  +EA     E+MDQ ++       
Sbjct: 275 KLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAK----ELMDQAMERKCMPGV 330

Query: 321 ---------------------------------PDVVTFNVIMDELCKNGKMDEASRLLE 347
                                            P VVT++ ++D LCK  ++D+A  +L+
Sbjct: 331 PVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQ 390

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M   G  P+  T++ ++D FC  GR++ A+ELF  M   GC   V +Y
Sbjct: 391 KMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAY 439



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 100/322 (31%), Positives = 151/322 (46%), Gaps = 33/322 (10%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF+ ML+   SP  +T   ++ G   K    D  LSL +RL  TG  P    Y+ LI+  
Sbjct: 179 IFEEMLSKGHSPELVTYATVVNG-YCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGL 237

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  R      +    + +    D + +TS I GLC   ++ EA A+  K+   GC P+ 
Sbjct: 238 CKHDRHDEARELFE--MAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDP 295

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV---------VCK------------- 250
           ++Y+ +I  LC+      A  L ++        GV         +CK             
Sbjct: 296 VSYNVIIYSLCKDNRVSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILER 355

Query: 251 --------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                   P+ VTY+ +IDGLCK   +D A  +  +M+     PDVVTY ++I  FC   
Sbjct: 356 MLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVG 415

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             +EA  L   M ++G   DVV +N+++   C+  K+DEA  ++E M  RG+ PN  + S
Sbjct: 416 RLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRGIQPNVVSLS 475

Query: 363 TLMDGFCLTGRVNHAKELFVSM 384
           T++DG C   RV  A+ L   M
Sbjct: 476 TIVDGLCKESRVEEARLLMEKM 497



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 147/284 (51%), Gaps = 8/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L +    D  L +F ++    + PD + Y ++I   CK+ ++      
Sbjct: 85  PTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASY 144

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+++S   PD V +T L+  L    +  +   +F ++ + G  P ++TY+T++NG C+
Sbjct: 145 FERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCK 204

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL+L   +  G G+      P+   Y+T+IDGLCK    D+A+ELF +M   ++
Sbjct: 205 AGRIDQALSLMRRL-KGTGR-----SPSGSLYSTLIDGLCKHDRHDEARELF-EMAAGDV 257

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             DV+ Y S I G C A   +EA  + ++M++ G  PD V++NVI+  LCK+ ++ EA  
Sbjct: 258 Q-DVIVYTSFISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKE 316

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L++  + R   P     + L+DG C + RV  A  +   M   G
Sbjct: 317 LMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETG 360



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 80/245 (32%), Positives = 126/245 (51%), Gaps = 6/245 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G   + YT N L+  F   G     + V    L + F PD   + +LI+G C   +I +A
Sbjct: 12  GFQHNTYTCNSLLEVFVNDGCHREAYRVFKDELVTLFRPDDFTYGTLIRGFCKAEQIPQA 71

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  ++KA G  P ++T+ +LI  LC    T  AL +F +M +      +  KP+   Y
Sbjct: 72  VNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMID------MKVKPDAFLY 125

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T +I  LCK   +D A   F +M      PD VTY  L+H    A  W + + +  EM+ 
Sbjct: 126 TVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLFKACKWEQGHQIFEEMLS 185

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  P++VT+  +++  CK G++D+A  L+  +   G +P+ S +STL+DG C   R + 
Sbjct: 186 KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRSPSGSLYSTLIDGLCKHDRHDE 245

Query: 377 AKELF 381
           A+ELF
Sbjct: 246 ARELF 250



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 8/188 (4%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKMGRVS 159
           R   P +    +L   L K++  +    + +R+  TG   P + TY+ +I+  CK  R+ 
Sbjct: 324 RKCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLD 383

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
             +VVL ++ R+   PD V +T++I   C   R+ EA  LF ++   GC  +V+ Y+ LI
Sbjct: 384 DAYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILI 443

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            G CR      A+ + EEMA G G      +PN V+ +TI+DGLCKE  V++A+ L  +M
Sbjct: 444 RGYCRAAKVDEAIAMIEEMA-GRG-----IQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497

Query: 280 KDKNINPD 287
             +++ PD
Sbjct: 498 NFESL-PD 504



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 58/180 (32%), Positives = 93/180 (51%), Gaps = 6/180 (3%)

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+  TY TLI G C+      A+NL  EM       G+   P  VT+ ++I  LC+  F
Sbjct: 49  RPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAA----GIT--PTIVTFGSLIRKLCELNF 102

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            DKA ++F QM D  + PD   Y  +I   C  N  + A      M+  G  PD VT+ V
Sbjct: 103 TDKALQIFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTV 162

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K  K ++  ++ E M+ +G +P   T++T+++G+C  GR++ A  L   ++  G
Sbjct: 163 LVHSLFKACKWEQGHQIFEEMLSKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTG 222



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 77/151 (50%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I + ML      P + +++ +   L K    D    + +++   G  PD+ TY  
Sbjct: 347 EEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVVTYTA 406

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK+GR+     +  R+       D VA+  LI+G C  +++ EA A+  ++   G
Sbjct: 407 IIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEMAGRG 466

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            +PNV++ ST+++GLC+      A  L E+M
Sbjct: 467 IQPNVVSLSTIVDGLCKESRVEEARLLMEKM 497



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+  TY T+I G CK   + +A  L  +MK   I P +VT+ SLI   C  N  ++A  
Sbjct: 49  RPDDFTYGTLIRGFCKAEQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQ 108

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +  +M+D  V+PD   + V++  LCK  K+D A+   E M+  G  P+  T++ L+    
Sbjct: 109 IFHQMIDMKVKPDAFLYTVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHSLF 168

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
              +     ++F  M S G    + +Y
Sbjct: 169 KACKWEQGHQIFEEMLSKGHSPELVTY 195


>gi|255660824|gb|ACU25581.1| pentatricopeptide repeat-containing protein [Mulguraea aspera]
          Length = 418

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + ++A G  P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM B     G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 231 EMLBN----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRX 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 140/256 (54%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVHPDVYTYSVLINGLCKESKMDDANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 229 FDEMLBNGLVPNXVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 289 KGDLKQAHDLIDEMSMKG------LKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++P++ T+ +I++E CK G +   S+
Sbjct: 343 RXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           LL+ M   G  PN  T
Sbjct: 403 LLKEMQRXGYVPNVVT 418



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 148/285 (51%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHXFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSVMQASGVHPDVYTYSVLINGLCKESKMDDANELFDEMLBNGLVPNXVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++ +M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 253 KNGRVDLAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++  C  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXG 411



 Score = 55.1 bits (131), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 63/160 (39%), Gaps = 36/160 (22%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 260 AMEIYRQMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 319 DGXCKEGDLETAFEYRKRMIKENIRXDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 210 -----------------------------------PNVIT 214
                                              PNV+T
Sbjct: 379 PEIGTYTMIINEXCKKGDVWTGSKLLKEMQRXGYVPNVVT 418


>gi|255660846|gb|ACU25592.1| pentatricopeptide repeat-containing protein [Tamonea boxiana]
          Length = 418

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/274 (36%), Positives = 147/274 (53%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + +   L   + A G +P+V TYS LINGLC+      A +LF 
Sbjct: 171 VVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E + QM  +   PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  LL EM  +G++PD +T+  ++D  CK G +D A  L E M+   +  
Sbjct: 285 GLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 345 DDVAYTALISGLCQEGRATDAEKMLREMLSVGLK 378



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFK 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+  +++M            P+ +TY T+I GLCK+G + +A++L  +M+ K 
Sbjct: 253 KNGKVDSAMETYKQM------LSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A  L   M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGRATDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC    V  A +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQG 411



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 87/252 (34%), Positives = 137/252 (54%), Gaps = 6/252 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     +    D    L   ++++G+ PD+YTY++LIN  CK  +++    +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDQGFKLKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   ++  A   + ++ +    P++ITY+TLI GLC+
Sbjct: 229 FNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM           KP+ +TYTT+IDG CKEG +D A EL   M  ++I
Sbjct: 289 KGDLKQAQDLLDEMRMKG------LKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK   +  A++
Sbjct: 343 RLDDVAYTALISGLCQEGRATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAK 402

Query: 345 LLELMILRGVNP 356
           LL+ M  +G  P
Sbjct: 403 LLKEMQRQGHVP 414



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    +    LF  +   GL P+  T+  LI+  CK G+V      
Sbjct: 204 PDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKNGKVDSAMET 263

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L  CF PD + + +LI GLC +  + +A  L  +++  G KP+ ITY+TLI+G C+
Sbjct: 264 YKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKITYTTLIDGNCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L E M   + +       + V YT +I GLC+EG    A+++  +M    +
Sbjct: 324 EGDLDSAFELRETMVKESIRL------DDVAYTALISGLCQEGRATDAEKMLREMLSVGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            PD  TY  +I+ FC   D   A  LL EM  QG  P VVT
Sbjct: 378 KPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 104/182 (57%), Gaps = 6/182 (3%)

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           ++ L++  C+ G   +A ++F+ +     K+G+  +P+ V++ T+++G  + G +D+  +
Sbjct: 139 FNILMHRFCKEGEIWIAQSVFDSIT----KWGL--RPSVVSFNTLMNGYIRLGDLDQGFK 192

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M    + PDV TY+ LI+G C  +  NEAN L  EM+D+G+ P+ VTF  ++D  C
Sbjct: 193 LKNAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHC 252

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           KNGK+D A    + M+ +   P+  T++TL+ G C  G +  A++L   M   G K    
Sbjct: 253 KNGKVDSAMETYKQMLSQCFLPDLITYNTLIYGLCKKGDLKQAQDLLDEMRMKGLKPDKI 312

Query: 395 SY 396
           +Y
Sbjct: 313 TY 314



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 101/255 (39%), Gaps = 82/255 (32%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           TY T+I+ LC     + A +L + + +  GK      F  +       + +   ++ +I+
Sbjct: 15  TYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLIN 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNIN-----------------------------------P 286
              + GFV  A E F   ++  +                                     
Sbjct: 75  AYLESGFVRDAIECFRLTREHKLRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPA 134

Query: 287 DVVTYNSLIHGFCYAND-------------WN------EANCLL-----IEMMDQG---- 318
            +  +N L+H FC   +             W         N L+     +  +DQG    
Sbjct: 135 SLYFFNILMHRFCKEGEIWIAQSVFDSITKWGLRPSVVSFNTLMNGYIRLGDLDQGFKLK 194

Query: 319 -------VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
                  VQPDV T++V+++ LCK  KM+EA+ L   M+ +G+ PN  TF+TL+DG C  
Sbjct: 195 NAMHASGVQPDVYTYSVLINGLCKESKMNEANDLFNEMLDKGLVPNGVTFTTLIDGHCKN 254

Query: 372 GRVNHAKELFVSMES 386
           G+V+ A E +  M S
Sbjct: 255 GKVDSAMETYKQMLS 269



 Score = 42.4 bits (98), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 48/117 (41%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + M+   P   ++  L     K    D+   L + +    +  D   Y  LI+  C+ GR
Sbjct: 302 MRMKGLKPDKITYTTLIDGNCKEGDLDSAFELRETMVKESIRLDDVAYTALISGLCQEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            +    +L  +L     PD   +T +I   C +  +  AA L  +++  G  P V+T
Sbjct: 362 ATDAEKMLREMLSVGLKPDNGTYTMIINEFCKKEDVKTAAKLLKEMQRQGHVPCVVT 418


>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
 gi|194700420|gb|ACF84294.1| unknown [Zea mays]
 gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
          Length = 598

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++N+L     K + Y   L L   + + G  P+  TYN++
Sbjct: 181 DALVVLDGML-CRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNNVTYNVI 239

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C+ G V     +L  +      P+ V + +++KG C+  R ++A  +  ++    C
Sbjct: 240 IDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENC 299

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN  T + +IN LCR G  +  + L+ E  + +G     C  N VTY  +I G+C++G 
Sbjct: 300 PPNEATLNVIINTLCRKG-LLQKVTLYLEKMSKHG-----CTANVVTYNAVISGMCEQGN 353

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A EL   M+     PD+VTYN+++ G C A+ W +A  L+I+M      PD  TFN 
Sbjct: 354 VDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNT 413

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+   C+ G + +A  + + M  +G NPN++T+ST++ G    G++  A EL   M + G
Sbjct: 414 IISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKG 473



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 134/254 (52%), Gaps = 8/254 (3%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY  L++ +C+ G +     V+G +        A A   LI  LC   R+ +A  +   +
Sbjct: 130 TYGALVDGYCRAGLLEDARRVVGGMPAHVQASSAYAHNPLIHALCERGRVADALVVLDGM 189

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDG 262
              GC P+V+TY+ L+   C+      AL L + M A G       C+PN VTY  IID 
Sbjct: 190 LCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEG-------CEPNNVTYNVIIDA 242

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           +C+EG VD+A+EL   +  +   P+ V YN+++ GFC    W +A+ +L EM+ +   P+
Sbjct: 243 MCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPN 302

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
             T NVI++ LC+ G + + +  LE M   G   N  T++ ++ G C  G V+ A EL  
Sbjct: 303 EATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLS 362

Query: 383 SMESMGCKHTVFSY 396
           +M+S GCK  + +Y
Sbjct: 363 NMQSFGCKPDIVTY 376



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 133/288 (46%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N L   L +       L +   +   G  PD+ TYNIL+   CK         ++  +
Sbjct: 165 AHNPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFM 224

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+ V +  +I  +C E  + +A  L   L + GCKPN + Y+T++ G C     
Sbjct: 225 RAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERW 284

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A  + +EM   N      C PN  T   II+ LC++G + K      +M       +V
Sbjct: 285 VDADEILDEMVREN------CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANV 338

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN++I G C   + + A  LL  M   G +PD+VT+N ++  LC   + ++A  L+  
Sbjct: 339 VTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIK 398

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M      P+ STF+T++  +C  G +  A E+F  M   GC     +Y
Sbjct: 399 MSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTY 446



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 81/244 (33%), Positives = 125/244 (51%), Gaps = 10/244 (4%)

Query: 143 YTYNILINCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           Y +N LI+  C+ GRV+   VVL G + R C  PD V +  L++  C      +A  L  
Sbjct: 164 YAHNPLIHALCERGRVADALVVLDGMLCRGC-APDVVTYNILLQAACKGRGYRQALELID 222

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            ++A GC+PN +TY+ +I+ +CR G    A  L   + +        CKPNTV Y T++ 
Sbjct: 223 FMRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRG------CKPNTVNYNTVLK 276

Query: 262 GLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           G C  E +VD A E+  +M  +N  P+  T N +I+  C      +    L +M   G  
Sbjct: 277 GFCSIERWVD-ADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCT 335

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +VVT+N ++  +C+ G +D A  LL  M   G  P+  T++T++ G C   R   A+EL
Sbjct: 336 ANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEEL 395

Query: 381 FVSM 384
            + M
Sbjct: 396 MIKM 399



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/295 (28%), Positives = 157/295 (53%), Gaps = 20/295 (6%)

Query: 115 GCLAKTKHYDTVL----SLFKRLNSTGLF---------PDLYTYNILINCFCKMGRVSHG 161
           GC   T +Y+TVL    S+ + +++  +          P+  T N++IN  C+ G +   
Sbjct: 263 GCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKV 322

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            + L ++ +   T + V + ++I G+C +  +  A  L + +++FGCKP+++TY+T++ G
Sbjct: 323 TLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKG 382

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC       A  L  +M+  N +      P+  T+ TII   C++G + +A E+F QM +
Sbjct: 383 LCSADRWEDAEELMIKMSQ-NDRL-----PDNSTFNTIISFWCQKGLILQAFEVFKQMPE 436

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K  NP+  TY+++I G   A    +A  LL EM ++G   D + + V+ + L K  K++E
Sbjct: 437 KGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMANKGFNTDKM-YRVLTESLNKEDKIEE 495

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +++  +   G++P T  ++T++ G C  G+ ++A ++   M S GC     +Y
Sbjct: 496 VVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTY 550



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/303 (28%), Positives = 145/303 (47%), Gaps = 12/303 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+     PP   + N++   L +      V    ++++  G   ++ TYN +I+  
Sbjct: 290 ILDEMVREN-CPPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGM 348

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G V     +L  +      PD V + +++KGLC+  R  +A  L  K+      P+ 
Sbjct: 349 CEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDN 408

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            T++T+I+  C+ G  + A  +F++M          C PN+ TY+TII GL K G +++A
Sbjct: 409 STFNTIISFWCQKGLILQAFEVFKQMPEKG------CNPNSTTYSTIIGGLTKAGKMEQA 462

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            EL  +M +K  N D + Y  L       +   E   ++ ++ D G+ P  V +N ++  
Sbjct: 463 LELLNEMANKGFNTDKM-YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLG 521

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC+NGK D A  +L  M+  G  P+ ST+  L++G    G    A+EL   +    C   
Sbjct: 522 LCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELLSRL----CSRD 577

Query: 393 VFS 395
           V S
Sbjct: 578 VLS 580



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N +   + +  + D+ L L   + S G  PD+ TYN ++   C   R      ++ 
Sbjct: 338 VVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMI 397

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++ ++   PD   F ++I   C +  I++A  +F ++   GC PN  TYST+I GL + G
Sbjct: 398 KMSQNDRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAG 457

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L  EMAN       +       Y  + + L KE  +++  ++  +++D  I+P
Sbjct: 458 KMEQALELLNEMANKGFNTDKM-------YRVLTESLNKEDKIEEVVQVVHKLQDSGISP 510

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
             V YN+++ G C     + A  +L +M+  G  PD  T+ ++++ L   G   EA  LL
Sbjct: 511 QTVLYNTVLLGLCRNGKTDYAIDVLADMVSCGCMPDESTYIILIEGLFYEGYSKEARELL 570

Query: 347 ELMILRGVNPNT 358
             +  R V  N+
Sbjct: 571 SRLCSRDVLSNS 582



 Score = 41.2 bits (95), Expect = 0.86,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 3/64 (4%)

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PDV   N ++ +LC+ G+  +A+R++E     G     +T+  L+DG+C  G +  A+ +
Sbjct: 94  PDVPLANRLVRDLCRRGRPADAARVVEAC---GPEATAATYGALVDGYCRAGLLEDARRV 150

Query: 381 FVSM 384
              M
Sbjct: 151 VGGM 154


>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
          Length = 772

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 15/335 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  S    LK  C +   GD+  +         D M+ +  +P  + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCAPN-IVTFNTLIGYLCRNG 265

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            ++ V  +  +++  G  PD+  Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +++KGLC+  R  EA  L +++    C  + +T++ L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C P+ +TYTT+I+G CKEG +D+A  L   M      P+ V+Y  ++ G C A
Sbjct: 386 G------CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSA 439

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             W +A  L+ +M+ QG  P+ VTFN +++ LCK G +++A  LL+ M++ G +P+  ++
Sbjct: 440 GRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 499

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ST++DG    G+   A EL   M + G       Y
Sbjct: 500 STVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 154/295 (52%), Gaps = 9/295 (3%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L ++       D V++ +++KGLC   R  +   L  ++    C PN++T++TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LCR G       +  +M+         C P+   Y TIIDG+CKEG ++ A E+  +M  
Sbjct: 261 LCRNGLFERVHEVLAQMSEHG------CTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VV YN+++ G C A  W EA  LL EM  +    D VTFN+++D  C+NG +D 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              LLE M+  G  P+  T++T+++GFC  G ++ A  L  SM S GCK    SY
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY 429



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ V++T ++KGLC+  R ++A  L +++   GC PN +T++TLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I+P
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK  + D A    
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G    A+EL   + S G
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 9/219 (4%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           VA+ +++ G C   R  + AA      A    PN  T+  ++ GLC  G    AL + +E
Sbjct: 80  VAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+         C P    Y  I++  C+ G    +  +   M  K    D    N +++ 
Sbjct: 137 MSFKG------CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C     +EA  LL ++   G + D+V++N ++  LC   +  +   L++ M+     PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             TF+TL+   C  G      E+   M   GC   +  Y
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI+ LC+  R  EAA              V+ Y+ ++ G CR G    A  L       
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGD---AAGVVAYNAMVAGYCRAGQLAAARRL------- 101

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                V   PN  T+  ++ GLC  G +  A E+  +M  K   P    Y+ ++   C +
Sbjct: 102 --AAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS 159

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             +  +  +L  M  +G   D    N++++ +C+ G +DEA  LL  +   G   +  ++
Sbjct: 160 GGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++ G C+  R    +EL   M  + C   + ++
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    +  L L   + + G+ P+   Y+ +     + GRV+    +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A   F  + + GC PN  TY+ LI GL  
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613

Query: 225 TGHTIVALNLFEEM 238
            G    A  L  E+
Sbjct: 614 EGLAKEAQELLSEL 627


>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 602

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/322 (29%), Positives = 164/322 (50%), Gaps = 34/322 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L G   K+   D  L + +R++   + PD+ TYN ++   C  G++     V
Sbjct: 174 PDVITYNVLIGGYCKSGEIDKALEVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 230

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L R L R C+ PD + +T LI+  C +S + +A  L  +++  GCKP+V+TY+ LING+C
Sbjct: 231 LDRQLQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 289

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV-----------------------------CKPNTV 254
           + G    A+     M +   K  V+                             C P+ V
Sbjct: 290 KEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVV 349

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+  +I+ LC++  + +A ++  +M      P+ ++YN L+HGFC     + A   L  M
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 409

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + +G  PD+VT+N ++  LCK+GK+D A  +L  +  +G +P   T++T++DG    G+ 
Sbjct: 410 VSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 469

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
            +A EL   M   G K  + +Y
Sbjct: 470 EYAVELLEEMRRKGLKPDIITY 491



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 120/431 (27%), Positives = 198/431 (45%), Gaps = 48/431 (11%)

Query: 1   MAFVSSTCSFHFTSISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTV 60
           +A     CSFH   I+ + +  N S S P    P SS+S +      T ++ +   R++ 
Sbjct: 4   VAPAEQVCSFHHFHITRARVSDN-SISRPFVLYPDSSVSHHFSKLKATRSRKRLENRVSA 62

Query: 61  --KDRASLEQFLKERCKSSGQGDITAI----TP--------------------------- 87
             K  AS      ++  S+  GD+  I    +P                           
Sbjct: 63  VSKSEASGLNGRLQQIVSTPNGDLNVIGMESSPIGVNGSRSFEEFASNIHLRKLVRNGEL 122

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLA-KTKHYDTVLSLFKRLNSTGLFPDLYTY 145
            E     + M+     P  +   +L+ G C + KTK    ++ +   L ++G  PD+ TY
Sbjct: 123 EEGLKFLERMIYQGDIPDVIACTSLIRGFCRSGKTKKATRIMEI---LENSGAVPDVITY 179

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N+LI  +CK G +     VL R+      PD V + ++++ LC   ++ EA  +  +   
Sbjct: 180 NVLIGGYCKSGEIDKALEVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQLQ 236

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
             C P+VITY+ LI   C       A+ L +EM          CKP+ VTY  +I+G+CK
Sbjct: 237 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG------CKPDVVTYNVLINGICK 290

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG +D+A +    M      P+V+T+N ++   C    W +A  LL +M+ +G  P VVT
Sbjct: 291 EGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVT 350

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN++++ LC+   +  A  +LE M   G  PN+ +++ L+ GFC   +++ A E    M 
Sbjct: 351 FNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMV 410

Query: 386 SMGCKHTVFSY 396
           S GC   + +Y
Sbjct: 411 SRGCYPDIVTY 421



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 170/356 (47%), Gaps = 23/356 (6%)

Query: 49  TAKLKESLRLTVK--------DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           + KLKE++ +  +        D  +    ++  C  SG G        +A  + D M   
Sbjct: 221 SGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVG--------QAMKLLDEM-RK 271

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           +   P + ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR   
Sbjct: 272 KGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMD 331

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  +LR   +P  V F  LI  LC +  +  A  +  K+   GC PN ++Y+ L++
Sbjct: 332 AERLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLH 391

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+      A+   E M +        C P+ VTY T++  LCK+G VD A E+  Q+ 
Sbjct: 392 GFCQEKKMDRAIEYLEIMVSRG------CYPDIVTYNTLLTALCKDGKVDAAVEILNQLS 445

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K  +P ++TYN++I G         A  LL EM  +G++PD++T++ ++  L + GK+D
Sbjct: 446 SKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVD 505

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA ++   M    + P+  T++ +M G C   + + A +    M   GCK T  +Y
Sbjct: 506 EAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATY 561



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 139/274 (50%), Gaps = 9/274 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 301 LNNMPSYGCKPNVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVVTFNILINFLCR 360

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
              +     VL ++ +    P+++++  L+ G C E ++  A      + + GC P+++T
Sbjct: 361 KRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVT 420

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TL+  LC+ G    A+ +  ++++        C P  +TY T+IDGL K G  + A E
Sbjct: 421 YNTLLTALCKDGKVDAAVEILNQLSSKG------CSPVLITYNTVIDGLTKVGKTEYAVE 474

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K + PD++TY++L+ G       +EA  +  +M    ++P  VT+N IM  LC
Sbjct: 475 LLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLC 534

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           K  +   A   L  M+ +G  P  +T++ L++G 
Sbjct: 535 KAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGI 568


>gi|255660818|gb|ACU25578.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
          Length = 418

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 155/280 (55%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN+V++TT+IDG CK+G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKNGDLKQAQDLINEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN ++++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK G + +A++L  +M  K 
Sbjct: 253 KDGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDG 411



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 150/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    +    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P++V+FT+LI G C + R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKLDDANELFDEMLDNGLVPNSVSFTTLIDGHCKDGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L  EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKNGDLKQAQDLINEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+L++ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVT 418


>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
          Length = 442

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 155/300 (51%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++N+L     K + Y   + L   + + G  P+  TYN+L
Sbjct: 25  DALSVLDDML-CRGCAPDVVTYNILLEATCKGRGYRQAMELIDLMRAEGCTPNNVTYNVL 83

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C  G V     +L  +      P  V + +++KGLC+  R  +A  L T++    C
Sbjct: 84  MDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVTEMLRENC 143

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN  T++ +I  LCR G    A+ L E+M+    K G  C  N VTY  II+GLC++  
Sbjct: 144 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMS----KHG--CTANIVTYNAIINGLCEQRN 197

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  L  +MK     PD+VTYN+L+ G C A  W +A  L+  M   G  PD VTFN 
Sbjct: 198 VDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNT 257

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+ G M +A  + + M  +G  PN+ T+ST++ G     +++ A ELF  M   G
Sbjct: 258 LIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 317



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 149/281 (53%), Gaps = 7/281 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN++   L +       + L ++++  G   ++ TYN +IN  C+   V     
Sbjct: 144 PPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTANIVTYNAIINGLCEQRNVDGAMG 203

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L ++      PD V + +L+KGLC+ +R ++A  L   +   GC P+ +T++TLI  LC
Sbjct: 204 LLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVTFNTLIGFLC 263

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A+ +F++M +        C PN++TY+TII GL K   +D+A ELF +M  K 
Sbjct: 264 QKGLMVDAIEVFKQMPDKG------CTPNSITYSTIISGLAKATKLDQALELFNEMGHKG 317

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            NPD + Y  L       +   EA   + ++ D G+ P  V +N I+  LC+NGK + A 
Sbjct: 318 FNPDKI-YQLLAECLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGKTEFAI 376

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++  M+  G  P+  T+  L++G    G +N A+EL + +
Sbjct: 377 DIMAYMVSSGCMPDDLTYVILIEGLAYEGYLNEARELLIKL 417



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 148/297 (49%), Gaps = 10/297 (3%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N L   L +       LS+   +   G  PD+ TYNIL+   CK GR    
Sbjct: 2   PVQPNAYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCK-GRGYRQ 60

Query: 162 FVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
            + L  ++R+  C TP+ V +  L+ G+C E  + +A  L   L + GCKP+ + Y+T++
Sbjct: 61  AMELIDLMRAEGC-TPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVL 119

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            GLC       A  L  EM   N      C PN  T+  +I  LC++G + +A +L  +M
Sbjct: 120 KGLCSAERWGDADELVTEMLREN------CPPNEATFNVVIYSLCRKGLLQQAIQLLEKM 173

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
                  ++VTYN++I+G C   + + A  LL +M   G +PD+VT+N ++  LC   + 
Sbjct: 174 SKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARW 233

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +A  L++ M   G  P+  TF+TL+   C  G +  A E+F  M   GC     +Y
Sbjct: 234 VDAEELMDNMTQNGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMPDKGCTPNSITY 290


>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 641

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/310 (32%), Positives = 161/310 (51%), Gaps = 11/310 (3%)

Query: 89  EAFCIFDYM-LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  + D M L    + PP+    L   C  +   + + +   + L++ G   D    N+
Sbjct: 126 DALTVLDEMPLRGCAATPPMCHVILEAAC--RGGGFRSAVRALQVLHAKGCTLDSGNCNL 183

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++  C+ G V  G  +L ++      PD V++ +++KGLC   R  +   L  ++   G
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVG 243

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV-VCKPNTVTYTTIIDGLCKE 266
           C PNV T++TLI  LCR G       LFE++     +     C P+   Y TIIDG+CK+
Sbjct: 244 CPPNVATFNTLIAYLCRNG-------LFEQVHEALSQMPEHGCTPDLRMYATIIDGICKD 296

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G  + A ++  +M    + P+VV YN+++ G C A  W EA  LL EM  +    D VTF
Sbjct: 297 GHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTF 356

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D  C+NG +D    LLE M+  G  P+  T++T+++GFC  G V+ A  L  +M +
Sbjct: 357 NILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSA 416

Query: 387 MGCKHTVFSY 396
            GCK    SY
Sbjct: 417 CGCKPNTISY 426



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 149/293 (50%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +FN L   L +   ++ V     ++   G  PDL  Y  +I+  CK G       
Sbjct: 245 PPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVAND 304

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L R+      P+ V + +++KGLC+  R  EA  L  ++    C  + +T++ L++  C
Sbjct: 305 ILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFC 364

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G     + L E+M          C P+ +TYTT+I+G CKEG VD+A  L   M    
Sbjct: 365 QNGLVDRVIELLEQMLEHG------CIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACG 418

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ ++Y  ++ G C A  W +A  L+  M+ QG  P+ VTFN +++ +CK G +++A 
Sbjct: 419 CKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAI 478

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+ M++ G +P+  ++ST++DG    G+   A EL   M + G       Y
Sbjct: 479 ELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIY 531



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++   G  PD+ TY  +IN FCK G V    ++L  
Sbjct: 354 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKN 413

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC   R ++A  L + +   GC PN +T++TLIN +C+ G 
Sbjct: 414 MSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGL 473

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I P
Sbjct: 474 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 526

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          ++   +   + D  V+ D   +N ++  LCK  + D A    
Sbjct: 527 NTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFF 586

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             M+  G  PN ST++ L+ G    G V  A++L 
Sbjct: 587 AYMVSNGCMPNESTYTILIRGLASEGLVREAQDLL 621



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L   + ++    L   +       D  T+NIL++ FC+ G V     +
Sbjct: 316 PNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIEL 375

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L     PD + +T++I G C E  + EA  L   + A GCKPN I+Y+ ++ GLCR
Sbjct: 376 LEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR 435

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  L   M          C PN VT+ T+I+ +CK+G V++A EL  QM     
Sbjct: 436 AERWVDAQELISHMIQQG------CLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGC 489

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD+++Y+++I G   A    EA  LL  M+++G+ P+ + ++ +   L + G+ D+  +
Sbjct: 490 SPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQ 549

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + +    V  + + ++ ++   C     + A + F  M S GC     +Y
Sbjct: 550 MFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 601



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 126/267 (47%), Gaps = 11/267 (4%)

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           + L++ G    +  YN +I  +C+ G+V+    +   +      P+A  +  +++ LCA 
Sbjct: 65  RALDTAGDAAGVVAYNAMIAGYCRAGQVAAARRLAAAVP---VPPNAYTYFPIVRSLCAR 121

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVC 249
             I +A  +  ++   GC         ++   CR G    A+   + + A G       C
Sbjct: 122 GLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRALQVLHAKG-------C 174

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
             ++     ++  +C++G VD+  EL  ++      PD+V+YN+++ G C A  W++   
Sbjct: 175 TLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEE 234

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L++EM+  G  P+V TFN ++  LC+NG  ++    L  M   G  P+   ++T++DG C
Sbjct: 235 LMVEMVRVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGCTPDLRMYATIIDGIC 294

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G    A ++   M S G K  V  Y
Sbjct: 295 KDGHHEVANDILSRMPSYGLKPNVVCY 321


>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
          Length = 691

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 169/332 (50%), Gaps = 30/332 (9%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD ML+     P + ++N+L   L    H    LS+ + +   G  P++ TYN L+  F 
Sbjct: 138 FDSMLS-DGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFF 196

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           + G V     ++G +L     P+ V F S++ G+C   ++ +A  +F ++   G  P+ +
Sbjct: 197 RAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGV 256

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMAN--------------------GNGKFGVVC---- 249
           +Y+TL+ G C+ G +  AL++F EM                      GN ++ V      
Sbjct: 257 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQM 316

Query: 250 -----KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                + N VT+T +IDG CK+GF+D A      M+   I P VV YN+LI+G+C     
Sbjct: 317 RERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRM 376

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  LL EM  +G++PDVVT++ I+   CKN     A  L + M+ +GV P+  T+S+L
Sbjct: 377 DEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSL 436

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   C   R++ A  LF +M  +G +   F+Y
Sbjct: 437 IRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTY 468



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 148/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN +   + K    +    +F  +   GL PD  +YN L+  +CK G       V
Sbjct: 218 PNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSV 277

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    PD V FTSLI  +C    +  A  L  +++  G + N +T++ LI+G C+
Sbjct: 278 FAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCK 337

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL     M           KP+ V Y  +I+G C  G +D+A+EL  +M+ K +
Sbjct: 338 KGFLDDALLAVRGMRQCR------IKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGL 391

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVTY+++I  +C   D + A  L  +M+++GV PD +T++ ++  LC+  ++ +A  
Sbjct: 392 KPDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHV 451

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + MI  G+ P+  T+++L+DG C  G V  A  L   M   G    V +Y
Sbjct: 452 LFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTY 503



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M+    +P  + S+N L G   K       LS+F  +   G+ PD+ T+  L
Sbjct: 238 DARKVFDEMMREGLAPDGV-SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSL 296

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G +     ++ ++       + V FT+LI G C +  + +A      ++    
Sbjct: 297 IHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRI 356

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           KP+V+ Y+ LING C  G    A  L  EM A G        KP+ VTY+TII   CK  
Sbjct: 357 KPSVVCYNALINGYCMVGRMDEARELLHEMEAKG-------LKPDVVTYSTIISAYCKNC 409

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A EL  QM +K + PD +TY+SLI   C     ++A+ L   M+  G+QPD  T+ 
Sbjct: 410 DTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYT 469

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            ++D  CK G ++ A  L + M+  GV P+  T+S L++G   + R   A++L 
Sbjct: 470 SLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSKSARAMEAQQLL 523



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 157/313 (50%), Gaps = 24/313 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M   +   P + +F  L   + K  + +  ++L +++   GL  +  T+  
Sbjct: 272 HEALSVFAEM-TQKGIMPDVVTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTA 330

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+ FCK G +    + + R +R C   P  V + +LI G C   R+ EA  L  +++A 
Sbjct: 331 LIDGFCKKGFLDDALLAV-RGMRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAK 389

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KP+V+TYST+I+  C+   T  A  L ++M       GV+  P+ +TY+++I  LC+E
Sbjct: 390 GLKPDVVTYSTIISAYCKNCDTHSAFELNQQMLEK----GVL--PDAITYSSLIRVLCEE 443

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +  A  LF  M    + PD  TY SLI G C   +   A  L  +M+  GV PDVVT+
Sbjct: 444 KRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTY 503

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM---------------DGFCLT 371
           +V+++ L K+ +  EA +LL  +      P  + +  LM                GFC+ 
Sbjct: 504 SVLINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMK 563

Query: 372 GRVNHAKELFVSM 384
           G +N A +++ SM
Sbjct: 564 GLMNEADKVYQSM 576



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 145/292 (49%), Gaps = 21/292 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L          D    L   + + GL PD+ TY+ +I+ +CK       F +
Sbjct: 358 PSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFEL 417

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L     PDA+ ++SLI+ LC E R+ +A  LF  +   G +P+  TY++LI+G C+
Sbjct: 418 NQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDGHCK 477

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL+L ++M     K GV+  P+ VTY+ +I+GL K     +A++L  ++  +  
Sbjct: 478 EGNVERALSLHDKMV----KAGVL--PDVVTYSVLINGLSKSARAMEAQQLLFKLYHEEP 531

Query: 285 NPDVVTYNSLIH---------------GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            P    Y++L+H               GFC     NEA+ +   M+D+    D   ++V+
Sbjct: 532 IPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKVYQSMLDRNWNLDGSVYSVL 591

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +   C+ G + +A    + M+ RG  PN+++  +L+ G    G V  A ++ 
Sbjct: 592 IHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFENGMVVEADQVI 643



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 134/288 (46%), Gaps = 65/288 (22%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + P  +A+ +++  L +++ +  A   F  + + G  PNV TY+ LI  LC  GH   AL
Sbjct: 112 YVPSVLAYNAVLLAL-SDASLTSARRFFDSMLSDGVAPNVYTYNILIRALCGRGHRKEAL 170

Query: 233 NLFEEMANGNGKFGVV-----------------------------CKPNTVTYTTIIDGL 263
           ++  +M        VV                              KPN VT+ ++++G+
Sbjct: 171 SILRDMRGAGCGPNVVTYNTLVAAFFRAGEVDGAERLVGMMLDGGLKPNLVTFNSMVNGM 230

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G ++ A+++F +M  + + PD V+YN+L+ G+C A   +EA  +  EM  +G+ PDV
Sbjct: 231 CKAGKMEDARKVFDEMMREGLAPDGVSYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDV 290

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF--------------- 368
           VTF  ++  +CK G ++ A  L+  M  RG+  N  TF+ L+DGF               
Sbjct: 291 VTFTSLIHVMCKAGNLEWAVTLVRQMRERGLQMNEVTFTALIDGFCKKGFLDDALLAVRG 350

Query: 369 --------------------CLTGRVNHAKELFVSMESMGCKHTVFSY 396
                               C+ GR++ A+EL   ME+ G K  V +Y
Sbjct: 351 MRQCRIKPSVVCYNALINGYCMVGRMDEARELLHEMEAKGLKPDVVTY 398



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 9/255 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     K     +   L +++   G+ PD  TY+ LI   C+  R+S   V+
Sbjct: 393 PDVVTYSTIISAYCKNCDTHSAFELNQQMLEKGVLPDAITYSSLIRVLCEEKRLSDAHVL 452

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    PD   +TSLI G C E  +  A +L  K+   G  P+V+TYS LINGL +
Sbjct: 453 FKNMIKLGLQPDEFTYTSLIDGHCKEGNVERALSLHDKMVKAGVLPDVVTYSVLINGLSK 512

Query: 225 TGHTIVALNLF-----EEMANGNGKFGVVC----KPNTVTYTTIIDGLCKEGFVDKAKEL 275
           +   + A  L      EE    N K+  +     K    +   ++ G C +G +++A ++
Sbjct: 513 SARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGLMNEADKV 572

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           +  M D+N N D   Y+ LIHG C A +  +A     +M+ +G  P+  +   ++  L +
Sbjct: 573 YQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTISLIRGLFE 632

Query: 336 NGKMDEASRLLELMI 350
           NG + EA ++++ ++
Sbjct: 633 NGMVVEADQVIQQLL 647



 Score = 44.3 bits (103), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 50/250 (20%), Positives = 88/250 (35%), Gaps = 59/250 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M+ +   P   T  +L+ G   K  + +  LSL  ++   G+ PD+ TY++
Sbjct: 447 SDAHVLFKNMIKLGLQPDEFTYTSLIDGH-CKEGNVERALSLHDKMVKAGVLPDVVTYSV 505

Query: 148 LINC--------------------------------------------------FCKMGR 157
           LIN                                                   FC  G 
Sbjct: 506 LINGLSKSARAMEAQQLLFKLYHEEPIPANTKYDALMHCCRKAELKSVLALLKGFCMKGL 565

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           ++    V   +L   +  D   ++ LI G C    +M+A +   ++   G  PN  +  +
Sbjct: 566 MNEADKVYQSMLDRNWNLDGSVYSVLIHGHCRAGNVMKALSFHKQMLQRGFAPNSTSTIS 625

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCK-PNTVTYTTIIDGLCKEGFVDKAKELF 276
           LI GL   G  + A  + +++ N        C   +      +ID    EG VD   ++ 
Sbjct: 626 LIRGLFENGMVVEADQVIQQLLN-------CCSLADAEASKALIDLNLNEGNVDAVLDVL 678

Query: 277 LQMKDKNINP 286
             M    + P
Sbjct: 679 HGMAKDGLLP 688


>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
          Length = 644

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 15/335 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  S    LK  C +   GD+  +         D M+ +  +P  + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCAPN-IVTFNTLIGYLCRNG 265

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            ++ V  +  +++  G  PD+  Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +++KGLC+  R  EA  L +++    C  + +T++ L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C P+ +TYTT+I+G CKEG +D+A  L   M      P+ V+Y  ++ G C A
Sbjct: 386 G------CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSA 439

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             W +A  L+ +M+ QG  P+ VTFN +++ LCK G +++A  LL+ M++ G +P+  ++
Sbjct: 440 GRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 499

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ST++DG    G+   A EL   M + G       Y
Sbjct: 500 STVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 154/295 (52%), Gaps = 9/295 (3%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L ++       D V++ +++KGLC   R  +   L  ++    C PN++T++TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LCR G       +  +M+         C P+   Y TIIDG+CKEG ++ A E+  +M  
Sbjct: 261 LCRNGLFERVHEVLAQMSEHG------CTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VV YN+++ G C A  W EA  LL EM  +    D VTFN+++D  C+NG +D 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              LLE M+  G  P+  T++T+++GFC  G ++ A  L  SM S GCK    SY
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY 429



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ V++T ++KGLC+  R ++A  L +++   GC PN +T++TLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I+P
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK  + D A    
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G    A+EL   + S G
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 9/219 (4%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           VA+ +++ G C   R  + AA      A    PN  T+  ++ GLC  G    AL + +E
Sbjct: 80  VAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+         C P    Y  I++  C+ G    +  +   M  K    D    N +++ 
Sbjct: 137 MSFKG------CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C     +EA  LL ++   G + D+V++N ++  LC   +  +   L++ M+     PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             TF+TL+   C  G      E+   M   GC   +  Y
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI+ LC+  R  EAA              V+ Y+ ++ G CR G    A  L       
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGD---AAGVVAYNAMVAGYCRAGQLAAARRLAAA---- 104

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                V   PN  T+  ++ GLC  G +  A E+  +M  K   P    Y+ ++   C +
Sbjct: 105 -----VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS 159

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             +  +  +L  M  +G   D    N++++ +C+ G +DEA  LL  +   G   +  ++
Sbjct: 160 GGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++ G C+  R    +EL   M  + C   + ++
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    +  L L   + + G+ P+   Y+ +     + GRV+    +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A   F  + + GC PN  TY+ LI GL  
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613

Query: 225 TGHTIVALNLFEEM 238
            G    A  L  E+
Sbjct: 614 EGLAKEAQELLSEL 627


>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
          Length = 644

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 15/335 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  S    LK  C +   GD+  +         D M+ +  +P  + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCAPN-IVTFNTLIGYLCRNG 265

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            ++ V  +  +++  G  PD+  Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +++KGLC+  R  EA  L +++    C  + +T++ L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C P+ +TYTT+I+G CKEG +D+A  L   M      P+ V+Y  ++ G C A
Sbjct: 386 G------CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSA 439

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             W +A  L+ +M+ QG  P+ VTFN +++ LCK G +++A  LL+ M++ G +P+  ++
Sbjct: 440 GRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 499

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ST++DG    G+   A EL   M + G       Y
Sbjct: 500 STVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 154/295 (52%), Gaps = 9/295 (3%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L ++       D V++ +++KGLC   R  +   L  ++    C PN++T++TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LCR G       +  +M+         C P+   Y TIIDG+CKEG ++ A E+  +M  
Sbjct: 261 LCRNGLFERVHEVLAQMSEHG------CTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VV YN+++ G C A  W EA  LL EM  +    D VTFN+++D  C+NG +D 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              LLE M+  G  P+  T++T+++GFC  G ++ A  L  SM S GCK    SY
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY 429



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ V++T ++KGLC+  R ++A  L +++   GC PN +T++TLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I+P
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK  + D A    
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G    A+EL   + S G
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 9/219 (4%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           VA+ +++ G C   R  + AA      A    PN  T+  ++ GLC  G    AL + +E
Sbjct: 80  VAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+         C P    Y  I++  C+ G    +  +   M  K    D    N +++ 
Sbjct: 137 MSFKG------CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C     +EA  LL ++   G + D+V++N ++  LC   +  +   L++ M+     PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             TF+TL+   C  G      E+   M   GC   +  Y
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI+ LC+  R  EAA              V+ Y+ ++ G CR G    A  L       
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGD---AAGVVAYNAMVAGYCRAGQLAAARRLAAA---- 104

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                V   PN  T+  ++ GLC  G +  A E+  +M  K   P    Y+ ++   C +
Sbjct: 105 -----VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS 159

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             +  +  +L  M  +G   D    N++++ +C+ G +DEA  LL  +   G   +  ++
Sbjct: 160 GGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++ G C+  R    +EL   M  + C   + ++
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    +  L L   + + G+ P+   Y+ +     + GRV+    +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A   F  + + GC PN  TY+ LI GL  
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613

Query: 225 TGHTIVALNLFEEM 238
            G    A  L  E+
Sbjct: 614 EGLAKEAQELLSEL 627


>gi|449481246|ref|XP_004156125.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g02150-like [Cucumis
           sativus]
          Length = 822

 Score =  176 bits (446), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 102/303 (33%), Positives = 157/303 (51%), Gaps = 7/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  M N R + P   S N L   L+K+ +   V   F  +   G+ P ++TYN++I+  C
Sbjct: 183 FSRMRNFR-TLPKARSCNFLLHRLSKSGNGQLVRKFFNDMIGAGIAPSVFTYNVMIDYLC 241

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K G + +   +  ++     +PD V + SLI G      + E A+LF ++K  GC P++I
Sbjct: 242 KEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDII 301

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY+ LIN  C+      A   F EM N NG      KPN VTY+T+ID  CKEG +  A 
Sbjct: 302 TYNGLINCYCKFEKMPRAFEYFSEMKN-NG-----LKPNVVTYSTLIDAFCKEGMMQGAI 355

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   M+   + P+  TY SLI   C A +  EA  LL +M+  GV+ ++VT+  ++D L
Sbjct: 356 KLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGL 415

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK G+M EA  +   M+  G++PN   ++ L+ G+    R+  A ++   M     K  +
Sbjct: 416 CKAGRMIEAEEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDL 475

Query: 394 FSY 396
             Y
Sbjct: 476 ILY 478



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M  M  SP  +T +N L     K    + V SLF  +   G  PD+ TYN LINC+
Sbjct: 252 LFVQMREMGLSPDVVT-YNSLIDGYGKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCY 310

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  ++   F     +  +   P+ V +++LI   C E  +  A  L   ++  G  PN 
Sbjct: 311 CKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNE 370

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY++LI+  C+ G+   A  L  +M       GV  K N VTYT ++DGLCK G + +A
Sbjct: 371 FTYTSLIDANCKAGNLTEAWKLLNDMLQA----GV--KLNIVTYTALLDGLCKAGRMIEA 424

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           +E+F  M    I+P+   Y +L+HG+  A    +A  +L +M +  ++PD++ +  I+  
Sbjct: 425 EEVFRSMLKDGISPNQQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWG 484

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C   K++E   +LE M  RG++ N    +T++D +   G+ + A   F  M+ +G + T
Sbjct: 485 HCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEAT 544

Query: 393 VFSY 396
           + +Y
Sbjct: 545 IVTY 548



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L  C  K +        F  + + GL P++ TY+ LI+ FCK G +     +
Sbjct: 298 PDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKL 357

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + R+   P+   +TSLI   C    + EA  L   +   G K N++TY+ L++GLC+
Sbjct: 358 LXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCK 417

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  I A  +F  M     K G+   PN   YT ++ G  K   ++ A ++  QM + NI
Sbjct: 418 AGRMIEAEEVFRSML----KDGI--SPNQQVYTALVHGYIKAERMEDAMKILKQMTECNI 471

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++ Y S+I G C      E   +L EM  +G+  + V    I+D   K GK  +A  
Sbjct: 472 KPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALN 531

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + M   GV     T+  L+DG C  G V  A + F  M S+G +  V  Y
Sbjct: 532 FFQEMQDVGVEATIVTYCVLIDGLCEAGIVELAVDYFCRMLSLGLQPNVAVY 583



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/300 (27%), Positives = 144/300 (48%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ + + ML        +T   LL G L K         +F+ +   G+ P+   Y  L
Sbjct: 388 EAWKLLNDMLQAGVKLNIVTYTALLDG-LCKAGRMIEAEEVFRSMLKDGISPNQQVYTAL 446

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ + K  R+     +L ++      PD + + S+I G C++ ++ E   +  ++K+ G 
Sbjct: 447 VHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILEEMKSRGI 506

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N +  +T+I+   + G +  ALN F+EM +      V  +   VTY  +IDGLC+ G 
Sbjct: 507 SANPVISTTIIDAYFKAGKSSDALNFFQEMQD------VGVEATIVTYCVLIDGLCEAGI 560

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+ A + F +M    + P+V  Y SLI G C  N    A  L  EM  +G+ PD+  F  
Sbjct: 561 VELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFTA 620

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D   K+G + EA  L+  M    +  +   +++L+ GF   G ++ A++ F  M   G
Sbjct: 621 LIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTSLVSGFSQCGELHQARKFFNEMIEKG 680



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 147/334 (44%), Gaps = 31/334 (9%)

Query: 94  FDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           F+Y   M+ +   P + +++ L     K       + L   +  TGL P+ +TY  LI+ 
Sbjct: 320 FEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDA 379

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK G ++  + +L  +L++    + V +T+L+ GLC   R++EA  +F  +   G  PN
Sbjct: 380 NCKAGNLTEAWKLLNDMLQAGVKLNIVTYTALLDGLCKAGRMIEAEEVFRSMLKDGISPN 439

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVVC----------------- 249
              Y+ L++G  +      A+ + ++M   N K     +G +                  
Sbjct: 440 QQVYTALVHGYIKAERMEDAMKILKQMTECNIKPDLILYGSIIWGHCSQRKLEETKLILE 499

Query: 250 -------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                    N V  TTIID   K G    A   F +M+D  +   +VTY  LI G C A 
Sbjct: 500 EMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGVEATIVTYCVLIDGLCEAG 559

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
               A      M+  G+QP+V  +  ++D LC N  ++ A +L + M  RG+ P+ + F+
Sbjct: 560 IVELAVDYFCRMLSLGLQPNVAVYTSLIDGLCXNNCIESAKKLFDEMQCRGMTPDITAFT 619

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+DG    G +  A  L   M  +  +  +  Y
Sbjct: 620 ALIDGNLKHGNLQEALVLISRMTELAIEFDLHVY 653



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 6/202 (2%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA   F++++ F   P   + + L++ L ++G+  +    F +M       G    P+  
Sbjct: 178 EANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM------IGAGIAPSVF 231

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY  +ID LCKEG ++ ++ LF+QM++  ++PDVVTYNSLI G+       E   L  EM
Sbjct: 232 TYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDGYGKVGSLEEVASLFNEM 291

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            D G  PD++T+N +++  CK  KM  A      M   G+ PN  T+STL+D FC  G +
Sbjct: 292 KDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNVVTYSTLIDAFCKEGMM 351

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A +L   M   G     F+Y
Sbjct: 352 QGAIKLLXDMRRTGLLPNEFTY 373



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 124/253 (49%), Gaps = 6/253 (2%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            +++L + F ++G +        R+      P A +   L+  L            F  +
Sbjct: 162 VFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLVRKFFNDM 221

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G  P+V TY+ +I+ LC+ G    +  LF +M     + G+   P+ VTY ++IDG 
Sbjct: 222 IGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMR----EMGL--SPDVVTYNSLIDGY 275

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            K G +++   LF +MKD    PD++TYN LI+ +C       A     EM + G++P+V
Sbjct: 276 GKVGSLEEVASLFNEMKDVGCVPDIITYNGLINCYCKFEKMPRAFEYFSEMKNNGLKPNV 335

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT++ ++D  CK G M  A +LL  M   G+ PN  T+++L+D  C  G +  A +L   
Sbjct: 336 VTYSTLIDAFCKEGMMQGAIKLLXDMRRTGLLPNEFTYTSLIDANCKAGNLTEAWKLLND 395

Query: 384 MESMGCKHTVFSY 396
           M   G K  + +Y
Sbjct: 396 MLQAGVKLNIVTY 408



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 140/300 (46%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  ML    SP       L+ G + K +  +  + + K++    + PDL  Y  +
Sbjct: 423 EAEEVFRSMLKDGISPNQQVYTALVHGYI-KAERMEDAMKILKQMTECNIKPDLILYGSI 481

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C   ++    ++L  +     + + V  T++I       +  +A   F +++  G 
Sbjct: 482 IWGHCSQRKLEETKLILEEMKSRGISANPVISTTIIDAYFKAGKSSDALNFFQEMQDVGV 541

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +  ++TY  LI+GLC  G   +A++ F  M        +  +PN   YT++IDGLC    
Sbjct: 542 EATIVTYCVLIDGLCEAGIVELAVDYFCRM------LSLGLQPNVAVYTSLIDGLCXNNC 595

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ AK+LF +M+ + + PD+  + +LI G     +  EA  L+  M +  ++ D+  +  
Sbjct: 596 IESAKKLFDEMQCRGMTPDITAFTALIDGNLKHGNLQEALVLISRMTELAIEFDLHVYTS 655

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++    + G++ +A +    MI +G+ P       L+  +   G+++ A EL   ME M 
Sbjct: 656 LVSGFSQCGELHQARKFFNEMIEKGILPEEVLCICLLREYYKRGQLDEAIELKNEMERMA 715



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 75/149 (50%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C   +  +  +     + G +++A E F +M++    P   + N L+H    + +    
Sbjct: 155 ICVSGSGVFDVLFSVFVELGLLEEANECFSRMRNFRTLPKARSCNFLLHRLSKSGNGQLV 214

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                +M+  G+ P V T+NV++D LCK G ++ + RL   M   G++P+  T+++L+DG
Sbjct: 215 RKFFNDMIGAGIAPSVFTYNVMIDYLCKEGDLENSRRLFVQMREMGLSPDVVTYNSLIDG 274

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   G +     LF  M+ +GC   + +Y
Sbjct: 275 YGKVGSLEEVASLFNEMKDVGCVPDIITY 303


>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
 gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
 gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
 gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 915

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 170/356 (47%), Gaps = 75/356 (21%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   LA+    D +  ++  +    + P++YTYN ++N +CK+G V      + +I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIV 245

Query: 170 RSCFTPD-----------------------------------AVAFTSLIKGLCAESRIM 194
            +   PD                                    VA+T LI GLC   RI 
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRID 305

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  LF K+K   C P V TY+ LI  LC +     ALNL +EM     + G+  KPN  
Sbjct: 306 EAMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEME----ETGI--KPNIH 359

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY-------------- 300
           TYT +ID LC +   +KA+EL  QM +K + P+V+TYN+LI+G+C               
Sbjct: 360 TYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELM 419

Query: 301 --------ANDWNE------------ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                      +NE            A  +L +M+++ V PDVVT+N ++D  C++G  D
Sbjct: 420 ESRKLSPNTRTYNELIKGYCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD 479

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A RLL LM  RG+ P+  T+++++D  C + RV  A +LF S+E  G    V  Y
Sbjct: 480 SAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMY 535



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 158/292 (54%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L   L     ++    L  ++   GL P++ TYN LIN +CK G +     V
Sbjct: 356 PNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDV 415

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +     +P+   +  LIKG C +S + +A  +  K+      P+V+TY++LI+G CR
Sbjct: 416 VELMESRKLSPNTRTYNELIKGYC-KSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCR 474

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G+   A  L   M +     G+V  P+  TYT++ID LCK   V++A +LF  ++ K +
Sbjct: 475 SGNFDSAYRLLSLMNDR----GLV--PDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NP+VV Y +LI G+C A   +EA+ +L +M+ +   P+ +TFN ++  LC +GK+ EA+ 
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL 588

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E M+  G+ P  ST + L+      G  +HA   F  M S G K    +Y
Sbjct: 589 LEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTY 640



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    +  + + + + S  L P+  TYN LI  +CK   V     V
Sbjct: 391 PNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGV 449

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L     PD V + SLI G C       A  L + +   G  P+  TY+++I+ LC+
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCK 509

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A +LF+ +       GV   PN V YT +IDG CK G VD+A  +  +M  KN 
Sbjct: 510 SKRVEEACDLFDSLEQK----GV--NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNC 563

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +T+N+LIHG C      EA  L  +M+  G+QP V T  +++  L K+G  D A  
Sbjct: 564 LPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYS 623

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + M+  G  P+  T++T +  +C  GR+  A+++   M   G    +F+Y
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTY 675



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 150/310 (48%), Gaps = 11/310 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + + M + + SP   T   L+ G      H    + +  ++    + PD+ TYN L
Sbjct: 411 DAVDVVELMESRKLSPNTRTYNELIKGYCKSNVH--KAMGVLNKMLERKVLPDVVTYNSL 468

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C+ G     + +L  +      PD   +TS+I  LC   R+ EA  LF  L+  G 
Sbjct: 469 IDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGV 528

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+ Y+ LI+G C+ G    A  + E+M + N      C PN++T+  +I GLC +G 
Sbjct: 529 NPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKN------CLPNSLTFNALIHGLCADGK 582

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A  L  +M    + P V T   LIH      D++ A     +M+  G +PD  T+  
Sbjct: 583 LKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTT 642

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +   C+ G++ +A  ++  M   GV+P+  T+S+L+ G+   G+ N A ++   M   G
Sbjct: 643 FIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTG 702

Query: 389 C---KHTVFS 395
           C   +HT  S
Sbjct: 703 CEPSQHTFLS 712



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/266 (31%), Positives = 133/266 (50%), Gaps = 11/266 (4%)

Query: 126 VLSLFKRLNSTGLFPDLYT-----YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           VL L +++N    F   Y      YN L+N   + G V     V   +L     P+   +
Sbjct: 162 VLDLCRKMNKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTY 221

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
             ++ G C    + EA    +K+   G  P+  TY++LI G C+      A  +F EM  
Sbjct: 222 NKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPL 281

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                   C+ N V YT +I GLC    +D+A +LF++MKD    P V TY  LI   C 
Sbjct: 282 KG------CRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTYTVLIKSLCG 335

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +   +EA  L+ EM + G++P++ T+ V++D LC   K ++A  LL  M+ +G+ PN  T
Sbjct: 336 SERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMPNVIT 395

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMES 386
           ++ L++G+C  G +  A ++   MES
Sbjct: 396 YNALINGYCKRGMIEDAVDVVELMES 421



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 153/322 (47%), Gaps = 17/322 (5%)

Query: 44  SDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS 103
            D     +L ES +L+   R +  + +K  CKS+          ++A  + + ML  R  
Sbjct: 410 EDAVDVVELMESRKLSPNTR-TYNELIKGYCKSN---------VHKAMGVLNKMLE-RKV 458

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P + ++N L     ++ ++D+   L   +N  GL PD +TY  +I+  CK  RV     
Sbjct: 459 LPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACD 518

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   + +    P+ V +T+LI G C   ++ EA  +  K+ +  C PN +T++ LI+GLC
Sbjct: 519 LFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLC 578

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A  L E+M     K G+  +P   T T +I  L K+G  D A   F QM    
Sbjct: 579 ADGKLKEATLLEEKMV----KIGL--QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSG 632

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD  TY + I  +C      +A  ++ +M + GV PD+ T++ ++      G+ + A 
Sbjct: 633 TKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAF 692

Query: 344 RLLELMILRGVNPNTSTFSTLM 365
            +L+ M   G  P+  TF +L+
Sbjct: 693 DVLKRMRDTGCEPSQHTFLSLI 714



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 147/305 (48%), Gaps = 13/305 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +++  +L   L K   +D   S F+++ S+G  PD +TY   I  +C+ GR+     +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDM 659

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + ++  +  +PD   ++SLIKG     +   A  +  +++  GC+P+  T+ +LI  L  
Sbjct: 660 MAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLE 719

Query: 225 TGHTIVALNLFEEMANGN-GKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKA 272
             +     +  E  A  N  +F  V +           PN  +Y  +I G+C+ G +  A
Sbjct: 720 MKYGKQKGSEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVA 779

Query: 273 KELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           +++F  M +++ I+P  + +N+L+   C     NEA  ++ +M+  G  P + +  V++ 
Sbjct: 780 EKVFDHMQRNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLIC 839

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            L K G+ +  + + + ++  G   +   +  ++DG    G V    ELF  ME  GCK 
Sbjct: 840 GLYKKGEKERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKF 899

Query: 392 TVFSY 396
           +  +Y
Sbjct: 900 SSQTY 904



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 96/172 (55%), Gaps = 1/172 (0%)

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  +  L+L  +M N + +F +  K     Y T+++ L + G VD+ K+++++M +  +
Sbjct: 156 VGDALYVLDLCRKM-NKDERFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKV 214

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ TYN +++G+C   +  EAN  + ++++ G+ PD  T+  ++   C+   +D A +
Sbjct: 215 CPNIYTYNKMVNGYCKLGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFK 274

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   M L+G   N   ++ L+ G C+  R++ A +LFV M+   C  TV +Y
Sbjct: 275 VFNEMPLKGCRRNEVAYTHLIHGLCVARRIDEAMDLFVKMKDDECFPTVRTY 326



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 85/363 (23%), Positives = 148/363 (40%), Gaps = 84/363 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + ML+    P  LT   L+ G  A  K  +  L L +++   GL P + T  I
Sbjct: 549 DEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATL-LEEKMVKIGLQPTVSTDTI 607

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K G   H +    ++L S   PDA  +T+ I+  C E R+++A  +  K++  G
Sbjct: 608 LIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRENG 667

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFE----------------------EMANGNGK- 244
             P++ TYS+LI G    G T  A ++ +                      EM  G  K 
Sbjct: 668 VSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHLLEMKYGKQKG 727

Query: 245 -------------FGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQM- 279
                        F  V +           PN  +Y  +I G+C+ G +  A+++F  M 
Sbjct: 728 SEPELCAMSNMMEFDTVVELLEKMVEHSVTPNAKSYEKLILGICEVGNLRVAEKVFDHMQ 787

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP------------------ 321
           +++ I+P  + +N+L+   C     NEA  ++ +M+  G  P                  
Sbjct: 788 RNEGISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEK 847

Query: 322 -----------------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
                            D + + +I+D + K G ++    L  +M   G   ++ T+S L
Sbjct: 848 ERGTSVFQNLLQCGYYEDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLL 907

Query: 365 MDG 367
           ++G
Sbjct: 908 IEG 910


>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 827

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 9/291 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R +P  + ++ +L  C  + +  D   +   RL   GL          + C C   R   
Sbjct: 118 RVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDE 177

Query: 161 GF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYST 217
              V+L R+      PDA+++ ++IK LC +SR  EA  +  ++   G  C P+V++++T
Sbjct: 178 AVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 237

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I+G  + G    A NLF EM       GVV  P+  TY +I+D LCK   +DKA+ +  
Sbjct: 238 VIHGFFKQGEVSKACNLFNEMVQK----GVV--PDVGTYNSIVDALCKARAMDKAEFVLR 291

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM DK + PD VTYN++IHG+  +  W E+  +  +M  +G+ PD VTF+  M  LCK+G
Sbjct: 292 QMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHG 351

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  +A  + + M  +G  P+  ++S L+ G+   GR      LF SM   G
Sbjct: 352 RSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFADMNNLFHSMADKG 402



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 103/322 (31%), Positives = 165/322 (51%), Gaps = 18/322 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTGLFP 140
           ++A  +FD +L  + +P    S N     LA+     +       VL+LF R+      P
Sbjct: 59  DDAHHLFDELLR-QGTPVHNRSLNDFLAALARAPDSVSCSNGPALVLALFNRICREEAGP 117

Query: 141 DL-----YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            +      TY IL++C C+  R   G   + R+LR+      +  T+ +K LC   R  E
Sbjct: 118 RVAPLTVRTYGILMDCCCRARRPDLGPAFVARLLRAGLKTGTIQATTFLKCLCHAKRTDE 177

Query: 196 AA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           A   L  ++    C P+ I+Y+T+I  LC    +  AL++ + MA   G+    C P+ V
Sbjct: 178 AVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGR----CSPDVV 233

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           ++ T+I G  K+G V KA  LF +M  K + PDV TYNS++   C A   ++A  +L +M
Sbjct: 234 SFNTVIHGFFKQGEVSKACNLFNEMVQKGVVPDVGTYNSIVDALCKARAMDKAEFVLRQM 293

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +D+GV+PD VT+N I+     +G   E++++   M  +G+ P+T TFS+ M   C  GR 
Sbjct: 294 VDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMSSLCKHGRS 353

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+E+F  M + G    + SY
Sbjct: 354 KDAEEIFQYMTTKGHMPDIVSY 375



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 163/337 (48%), Gaps = 14/337 (4%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           + D  +   F+   CK     D        A  IF YM   +   P + S+++L    A 
Sbjct: 334 IPDTVTFSSFMSSLCKHGRSKD--------AEEIFQYM-TTKGHMPDIVSYSILLHGYAT 384

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
              +  + +LF  +   G+  + +  NILI+   K G +    +V   +      P+ V 
Sbjct: 385 EGRFADMNNLFHSMADKGIVSNCHCINILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVT 444

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +++LI   C   R+ +A   F+++ + G +PN   Y +LI+G C  G  + A     EM 
Sbjct: 445 YSTLISAFCRMGRLADAMEKFSQMISIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMM 504

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           +       + +PN V +++II  LC EG V  A+++F  +      P +VT+NSLI G+C
Sbjct: 505 SKG-----LHRPNIVFFSSIIHSLCIEGRVMDAQDVFNLVIHIGDRPTIVTFNSLIDGYC 559

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 +A  +L  M+  G++PDVVT N ++   CK+GK+D+   L   M+ + V P T 
Sbjct: 560 LVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTV 619

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ ++DG    GR + AK++F  M   G    + +Y
Sbjct: 620 TYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTY 656



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 146/282 (51%), Gaps = 7/282 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            N+L    AK    D  + +F  +   G+ P++ TY+ LI+ FC+MGR++       +++
Sbjct: 410 INILISAHAKRGMMDEAMLVFTEMQGQGVRPNVVTYSTLISAFCRMGRLADAMEKFSQMI 469

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                P+   + SLI G C    +++A    +++ + G  +PN++ +S++I+ LC  G  
Sbjct: 470 SIGIEPNTAVYHSLIHGFCMHGDLVKAKEFISEMMSKGLHRPNIVFFSSIIHSLCIEGRV 529

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F      N    +  +P  VT+ ++IDG C  G ++KA  +   M    I PDV
Sbjct: 530 MDAQDVF------NLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDV 583

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT N+L+ G+C +   ++   L  EM+ + V+P  VT+N+++D L + G+   A ++   
Sbjct: 584 VTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHE 643

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           MI  G   +  T+  L+ G C     + A  LF  + +M CK
Sbjct: 644 MIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCK 685



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +F  +   G  P + T+N LI+ +C +G++   F VL  ++     PD V   +L+ G C
Sbjct: 535 VFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYC 594

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              +I +   LF ++     KP  +TY+ +++GL R G T  A  +F EM +      + 
Sbjct: 595 KSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDID 654

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  ++ GLC+    D+A  LF ++   +   D+   N++I+         EAN
Sbjct: 655 ------TYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTMINALYKVRRREEAN 708

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L   +   G+ P+V T+ V++  L K G ++EA  +   M   G  P++   + ++   
Sbjct: 709 DLFAAISTSGLVPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 768

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 769 LQKGDIVKA 777



 Score = 97.4 bits (241), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 66/269 (24%), Positives = 115/269 (42%), Gaps = 6/269 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L          +    +   + S G+ PD+ T N L++ +CK G++  G ++
Sbjct: 546 PTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLIL 605

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P  V +  ++ GL    R   A  +F ++   G   ++ TY  L+ GLCR
Sbjct: 606 FREMLHKKVKPTTVTYNIVLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCR 665

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              T  A+ LF ++        + CK +     T+I+ L K    ++A +LF  +    +
Sbjct: 666 NDLTDEAITLFHKLG------AMDCKFDITILNTMINALYKVRRREEANDLFAAISTSGL 719

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TY  +I          EA+ +   M   G  P     N I+  L + G + +A  
Sbjct: 720 VPNVSTYGVMIRNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGY 779

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGR 373
            +  +    ++   ST S LM  F   G+
Sbjct: 780 YMSKVDGTIISLEASTTSLLMSLFSSKGK 808



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 116/259 (44%), Gaps = 7/259 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF + D M+++   P  +T+  L+ G   K+   D  L LF+ +    + P   TYNI
Sbjct: 565 EKAFGVLDAMVSVGIEPDVVTNNTLVSG-YCKSGKIDDGLILFREMLHKKVKPTTVTYNI 623

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++   + GR S    +   ++ S    D   +  L+KGLC      EA  LF KL A  
Sbjct: 624 VLDGLLRAGRTSAAKKMFHEMIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMD 683

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CK ++   +T+IN L +      A +LF  ++      G+V  PN  TY  +I  L KEG
Sbjct: 684 CKFDITILNTMINALYKVRRREEANDLFAAISTS----GLV--PNVSTYGVMIRNLLKEG 737

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A  +F  M+     P     N +I       D  +A   + ++    +  +  T +
Sbjct: 738 SVEEADTMFSSMEKSGCAPSSRLLNDIIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTS 797

Query: 328 VIMDELCKNGKMDEASRLL 346
           ++M      GK  E  + L
Sbjct: 798 LLMSLFSSKGKHREQIKFL 816


>gi|359473521|ref|XP_002273398.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Vitis vinifera]
          Length = 755

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    D  + +F+++      PD+ TYN LINCFCK  R+   F  
Sbjct: 288 PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 347

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   P+ V +++ I   C E  + EA   F  ++     PN  TY++LI+  C+
Sbjct: 348 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 407

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL L EE+     K       N VTYT ++DGLC+EG + +A+E+F  M +  +
Sbjct: 408 AGNLAEALKLVEEILQAGIKL------NVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGV 461

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  TY +L+HGF  A +   A  +L EM ++ ++PD++ +  I+  LC   +++EA  
Sbjct: 462 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 521

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  +   G+N N   ++TLMD +  +G+   A  L   M  +G   T  +Y
Sbjct: 522 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTY 573



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 157/310 (50%), Gaps = 9/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F  M   R  P P  S N L   L+K    D     FK + + G+   ++TYNI
Sbjct: 202 EEASECFLKMRKFRVFPKP-RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G +     +  ++  + FTPD V + SLI G      + E   +F ++K   
Sbjct: 261 MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C P+VITY+ LIN  C+      A     EM ANG        KPN VTY+T ID  CKE
Sbjct: 321 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKE 373

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G + +A + F+ M+   + P+  TY SLI   C A +  EA  L+ E++  G++ +VVT+
Sbjct: 374 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 433

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D LC+ G+M EA  +   M+  GV PN  T++ L+ GF     + +AK++   M+ 
Sbjct: 434 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 493

Query: 387 MGCKHTVFSY 396
              K  +  Y
Sbjct: 494 KCIKPDLLLY 503



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 155/320 (48%), Gaps = 9/320 (2%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
            G G +  +  +E  CIF+ M +    P  +T +N L  C  K +           + + 
Sbjct: 298 DGHGKLGLL--DECICIFEQMKDADCDPDVIT-YNALINCFCKFERMPKAFEFLHEMKAN 354

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P++ TY+  I+ FCK G +         + R   TP+   +TSLI   C    + EA
Sbjct: 355 GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEA 414

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  ++   G K NV+TY+ L++GLC  G    A  +F  M N     GV   PN  TY
Sbjct: 415 LKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNA----GVA--PNQETY 468

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T ++ G  K   ++ AK++  +MK+K I PD++ Y +++ G C  +   EA  L+ E+ +
Sbjct: 469 TALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 528

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G+  + V +  +MD   K+G+  EA  LLE M+  G+     T+  L+DG C +G V  
Sbjct: 529 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLGLIATEVTYCALIDGLCKSGLVQE 588

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A   F  M  +G +  V  Y
Sbjct: 589 AMHHFGRMSEIGLQPNVAVY 608



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 143/282 (50%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L +         +F+ + + G+ P+  TY  L++ F K   + +   +L 
Sbjct: 430 VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK 489

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +   C  PD + + +++ GLC ESR+ EA  L  ++K  G   N + Y+TL++   ++G
Sbjct: 490 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 549

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L EEM +     G++     VTY  +IDGLCK G V +A   F +M +  + P
Sbjct: 550 QATEALTLLEEMLD----LGLI--ATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQP 603

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V  Y +L+ G C  N +  A  L  EM+D+G+ PD + +  ++D   K+G + EA  L 
Sbjct: 604 NVAVYTALVDGLCKNNCFEVAKKLFDEMLDKGMMPDKIAYTALIDGNMKHGNLQEALNLR 663

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + MI  G+  +   ++ L+ G   +G+V  A+ L   M   G
Sbjct: 664 DRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLLDEMIGKG 705



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 115/227 (50%), Gaps = 6/227 (2%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R+   P    F +L   L     + EA+  F K++ F   P   + + L++ L + G   
Sbjct: 178 RNVCVPGFGVFDALFSALIELGMLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGD 237

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           ++   F++M    G  G+  K +  TY  +ID LCKEG ++ A+ LF QMK+    PD+V
Sbjct: 238 LSRKFFKDM----GAAGI--KRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAGFTPDIV 291

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI G       +E  C+  +M D    PDV+T+N +++  CK  +M +A   L  M
Sbjct: 292 TYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEM 351

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+ PN  T+ST +D FC  G +  A + FV M  +      F+Y
Sbjct: 352 KANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTY 398



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 149/313 (47%), Gaps = 32/313 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFG----CLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           ++A  +   ++ +R   P    F+LL+     C+     +D   +LF  L   G+  +  
Sbjct: 149 SDANAVLKELICLRRVLPSWDVFDLLWATRNVCVPGFGVFD---ALFSALIELGMLEEAS 205

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
                  CF KM +    F V  +  RSC         +L+  L    R   +   F  +
Sbjct: 206 ------ECFLKMRK----FRVFPKP-RSC--------NALLHRLSKVGRGDLSRKFFKDM 246

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            A G K +V TY+ +I+ LC+ G   +A +LF +M            P+ VTY ++IDG 
Sbjct: 247 GAAGIKRSVFTYNIMIDYLCKEGDLEMARSLFTQMKEAG------FTPDIVTYNSLIDGH 300

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            K G +D+   +F QMKD + +PDV+TYN+LI+ FC      +A   L EM   G++P+V
Sbjct: 301 GKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEFLHEMKANGLKPNV 360

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT++  +D  CK G + EA +    M    + PN  T+++L+D  C  G +  A +L   
Sbjct: 361 VTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEE 420

Query: 384 MESMGCKHTVFSY 396
           +   G K  V +Y
Sbjct: 421 ILQAGIKLNVVTY 433



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 131/302 (43%), Gaps = 42/302 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F  MLN   +P   T   L+ G + K K  +    + K +    + PDL  Y  
Sbjct: 447 KEAEEVFRAMLNAGVAPNQETYTALVHGFI-KAKEMEYAKDILKEMKEKCIKPDLLLYGT 505

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT-------------------------- 181
           ++   C   R+    +++G I  S    +AV +T                          
Sbjct: 506 ILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLG 565

Query: 182 ---------SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                    +LI GLC    + EA   F ++   G +PNV  Y+ L++GLC+     VA 
Sbjct: 566 LIATEVTYCALIDGLCKSGLVQEAMHHFGRMSEIGLQPNVAVYTALVDGLCKNNCFEVAK 625

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF+EM +          P+ + YT +IDG  K G + +A  L  +M +  +  D+  Y 
Sbjct: 626 KLFDEMLDKG------MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYT 679

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI G  ++    +A  LL EM+ +GV PD V +  ++ +    GK+DEA  L   M  R
Sbjct: 680 ALIWGLSHSGQVQKARNLLDEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKR 739

Query: 353 GV 354
           G+
Sbjct: 740 GM 741


>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
          Length = 816

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP L +++ +   L K +  D   +  +++ + G+
Sbjct: 234 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 287

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD +TYN LI  +   G+      V   + R    PD VA  +L+  LC   +I EA  
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARD 347

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC--------- 249
           +F  +   G  P+V +Y+ ++NG    G  +   +LF+ M  G+G   V+C         
Sbjct: 348 VFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAY 406

Query: 250 ---------------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KP+ VTY T+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 466

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             Y+ LI GFC      +A  L+ E+M+ G++ D+V F  I++ LCK G++ +A  + +L
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  G++P+   ++ LMDG+CL G++  A  +F +M S G +  V  Y
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 574



 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 161/325 (49%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 45  LRPEEAHDLLDE-LQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRA 103

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  YTY IL++C  +  R        G++LR+    DA+  + L+KG C   R
Sbjct: 104 QGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKR 163

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +Y+ L+  LC  G +  A +L   MA G    G VC P
Sbjct: 164 TDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG----GTVCSP 219

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y T+IDG  KEG V+KA +LF +M  + I PD+VTY+S++H  C A   ++A   L
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++GV PD  T+N ++      G+  EA R+ + M  + + P+    +TLM   C  
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSY 364



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 153/302 (50%), Gaps = 13/302 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  D 
Sbjct: 89  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 148

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              + L+  FC+  R      ++L R       PD  ++  L+K LC + +  +A  L  
Sbjct: 149 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLR 208

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C P+V+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY+++
Sbjct: 209 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDLVTYSSV 262

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + PD  TYN+LI+G+     W EA  +  EM  Q +
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 322

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVV  N +M  LCK GK+ EA  + + M ++G NP+  +++ +++G+   G +    +
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTD 382

Query: 380 LF 381
           LF
Sbjct: 383 LF 384



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y Y+ 
Sbjct: 413 DKAMIIFNEMRD-HGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F S+I  LC   R+M+A  +F      G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + Y+ L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNVVGYGTLVNGYCKIG 585

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  K I P  + YN +I G   A     A     EM + G+  +  T++
Sbjct: 586 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 645

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  +  T +T++ G   T RV  AK+LF S+   
Sbjct: 646 IVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS 705

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 706 GLVPCAVTY 714



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 159/350 (45%), Gaps = 23/350 (6%)

Query: 47  TTTAKLKESLRL--------TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
           ++T + KE++R+         + D  +L   +   CK    G I      EA  +FD M 
Sbjct: 302 SSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK---YGKI-----KEARDVFDTM- 352

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            M+   P + S+ ++    A       +  LF  +   G+ P + T+N+LI  +   G +
Sbjct: 353 AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGML 412

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
               ++   +      P  V + ++I  LC   ++ +A   F ++   G  P+   Y  L
Sbjct: 413 DKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCL 472

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G C  G  + A  L  E+ N   +  +V       + +II+ LCK G V  A+ +F  
Sbjct: 473 IQGFCTHGSLLKAKELISEIMNNGMRLDIV------FFGSIINNLCKLGRVMDAQNIFDL 526

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
             +  ++PD V YN L+ G+C      +A  +   M+  G++P+VV +  +++  CK G+
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR 586

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +DE   L   M+ +G+ P+T  ++ ++DG    GR   AK  F  M   G
Sbjct: 587 IDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636



 Score =  126 bits (317), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/374 (25%), Positives = 159/374 (42%), Gaps = 68/374 (18%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 126 AHRPELALAFFGQLLRTGLRVDAIIASHLLKG-FCEAKRTDEALDILLHRTPELGCVPDV 184

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++YNIL+   C  G+      +L  +    +  +PD VA+ ++I G   E  + +A  LF
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLF 244

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN------------------GN 242
            ++   G  P+++TYS++++ LC+      A     +M N                    
Sbjct: 245 KEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 304

Query: 243 GKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           G++    +           P+ V   T++  LCK G + +A+++F  M  K  NPDV +Y
Sbjct: 305 GQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 364

Query: 292 NSLIHGF---------------------------------CYAN--DWNEANCLLIEMMD 316
             +++G+                                  YAN    ++A  +  EM D
Sbjct: 365 TIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMIIFNEMRD 424

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            GV+P VVT+  ++  LC+ GKMD+A      MI +GV P+   +  L+ GFC  G +  
Sbjct: 425 HGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCLIQGFCTHGSLLK 484

Query: 377 AKELFVSMESMGCK 390
           AKEL   + + G +
Sbjct: 485 AKELISEIMNNGMR 498



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL PD   YN+L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 522 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGY 581

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I Y+ +I+GL   G T+ A   F EM       G+
Sbjct: 582 CKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES----GI 637

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               N  TY+ ++ GL K    D+A  LF +++  N+  D++T N++I G        EA
Sbjct: 638 AM--NKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 695

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +   G+ P  VT+++++  L K G ++EA  +   M   G  P++
Sbjct: 696 KDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 746



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 7/284 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  IFD  +N+   P  +  +N+L          +  L +F  + S G+ P++  Y  L
Sbjct: 519 DAQNIFDLTVNVGLHPDAVV-YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N +CK+GR+  G  +   +L+    P  + +  +I GL    R + A   F ++   G 
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N  TYS ++ GL +      A+ LF+E+   N K  ++      T  T+I G+ +   
Sbjct: 638 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDII------TLNTMIAGMFQTRR 691

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++AK+LF  +    + P  VTY+ +I          EA  +   M + G +PD    N 
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           ++ EL K  ++  A   L  +  R  +    T   L+D F   G
Sbjct: 752 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
 gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
          Length = 610

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/307 (32%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF I + M + +   P L ++N +   L K   Y     +   + + GL PD  TYN L
Sbjct: 171 EAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTL 229

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+    S    + G +LR    PD V+F+SLI        + +A   F  +K FG 
Sbjct: 230 LVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGL 289

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ + Y+ L++G CR G+ + AL + +EM          C  + + Y TI++GLCKE  
Sbjct: 290 VPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG------CVLDVIAYNTILNGLCKEKM 343

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +LF +M ++   PD  T+ +LIHG C   +  +A  L   M  + ++PD+V +N 
Sbjct: 344 LTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNT 403

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK G+M++AS L + MI R + PN  T+  L++ +C  G V+ A  L+  M   G
Sbjct: 404 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 463

Query: 389 CKHTVFS 395
            K T+ +
Sbjct: 464 IKPTLVT 470



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 163/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IF  ML  +   P L SF+ L    ++ +H D  L  F+ +   GL PD   Y +
Sbjct: 240 SEAKEIFGEMLR-QGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 298

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C+ G +     +   +L      D +A+ +++ GLC E  + +A  LF ++   G
Sbjct: 299 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 358

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  T++TLI+G C+ G+   AL+LF  M   N       KP+ V Y T+IDG CK G
Sbjct: 359 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN------IKPDIVAYNTLIDGFCKVG 412

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++KA EL+  M  + I P+ +TY  LI+ +C     +EA  L   M+++G++P +VT N
Sbjct: 413 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 472

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C++G   +A   L  MI +GV P+  +++TL++GF     ++ A      ME  
Sbjct: 473 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE 532

Query: 388 GCKHTVFSY 396
           G    + +Y
Sbjct: 533 GLLPDIITY 541



 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/289 (32%), Positives = 150/289 (51%), Gaps = 7/289 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I D ML  +     + ++N +   L K K       LF  +   G  PD YT+  L
Sbjct: 311 EALKIRDEMLE-QGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERGALPDFYTFTTL 369

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C+ G ++    + G + +    PD VA+ +LI G C    + +A+ L+  + +   
Sbjct: 370 IHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKI 429

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN ITY  LIN  C  GH   A  L++ M           KP  VT  T+I G C+ G 
Sbjct: 430 FPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG------IKPTLVTCNTVIKGYCRSGD 483

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             KA E   +M  K + PD ++YN+LI+GF   ++ ++A   + +M  +G+ PD++T+NV
Sbjct: 484 SSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKEGLLPDIITYNV 543

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +M+  C+ G+M EA  +L  MI +G+NP+ ST++ L++G      +N A
Sbjct: 544 VMNGFCRQGRMQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEA 592



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           + N++   L K   +D V S    +   G++ D+ TYN LI  +C+ G +   F ++  +
Sbjct: 120 TLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLEEAFEIMNSM 179

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P    + ++I GLC + R   A  +  ++   G  P+  TY+TL+   CR  + 
Sbjct: 180 ADKGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTLLVESCRRDNF 239

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  +F EM     + GVV  P+ V+++++I    +   +D+A   F  MK   + PD 
Sbjct: 240 SEAKEIFGEML----RQGVV--PDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDN 293

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y  L+HG+C   +  EA  +  EM++QG   DV+ +N I++ LCK   + +A +L + 
Sbjct: 294 VIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDE 353

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ RG  P+  TF+TL+ G C  G +  A  LF +M     K  + +Y
Sbjct: 354 MVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAY 401



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F+LL     + +        F+ L S G    +   N L+    K+  V   + V   ++
Sbjct: 51  FDLLIRTYVQARKLREGTEAFRILRSKGYLVSINACNSLLGGLVKIDWVELAWEVHREVV 110

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           RS    +      ++  LC + +  +  +  ++++  G   +++TY+TLI   CR G   
Sbjct: 111 RSGIELNVYTLNIMVNALCKDGKFDDVKSFLSEMEGNGIYADMVTYNTLIGAYCREGLLE 170

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +   MA+         KP+  TY  II+GLCK+G   +AK + ++M +  ++PD  
Sbjct: 171 EAFEIMNSMADKG------LKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTT 224

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+L+   C  ++++EA  +  EM+ QGV PD+V+F+ ++    +N  +D+A      M
Sbjct: 225 TYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFSRNRHLDQALVYFRDM 284

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+ P+   ++ LM G+C  G +  A ++   M   GC   V +Y
Sbjct: 285 KKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAY 331



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/236 (30%), Positives = 118/236 (50%), Gaps = 7/236 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  M   R   P + ++N L     K    +    L+  + S  +FP+  TY IL
Sbjct: 381 KALSLFGTM-TQRNIKPDIVAYNTLIDGFCKVGEMEKASELWDGMISRKIFPNHITYGIL 439

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +C +G VS  F +   ++     P  V   ++IKG C      +A     ++ A G 
Sbjct: 440 INAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCNTVIKGYCRSGDSSKADEFLGRMIAKGV 499

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ I+Y+TLING  R  +   A     +M     K G++  P+ +TY  +++G C++G 
Sbjct: 500 APDHISYNTLINGFVREDNMDKAFLWINKME----KEGLL--PDIITYNVVMNGFCRQGR 553

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           + +A+ +  +M +K INPD  TY +LI+G    ++ NEA     EM+ +G  PD V
Sbjct: 554 MQEAELVLRKMIEKGINPDRSTYTALINGHVTQDNLNEAFRFHDEMLQRGFAPDDV 609


>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
 gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
          Length = 773

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/335 (29%), Positives = 170/335 (50%), Gaps = 15/335 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  S    LK  C +   GD+  +         D M+ +  +P  + +FN L G L +  
Sbjct: 215 DIVSYNAVLKGLCMAKRWGDVEEL--------MDEMVRVDCAPN-IVTFNTLIGYLCRNG 265

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            ++ V  +  +++  G  PD+  Y  +I+  CK G +     +L R+      P+ V + 
Sbjct: 266 LFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEVANEILNRMPSYGLKPNVVCYN 325

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +++KGLC+  R  EA  L +++    C  + +T++ L++  C+ G     + L E+M + 
Sbjct: 326 TVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLSH 385

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C P+ +TYTT+I+G CKEG +D+A  L   M      P+ V+Y  ++ G C A
Sbjct: 386 G------CMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLKGLCSA 439

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             W +A  L+ +M+ QG  P+ VTFN +++ LCK G +++A  LL+ M++ G +P+  ++
Sbjct: 440 GRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 499

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ST++DG    G+   A EL   M + G       Y
Sbjct: 500 STVIDGLGKAGKTEEALELLNVMVNKGISPNTIIY 534



 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 154/295 (52%), Gaps = 9/295 (3%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P PP    ++++     ++  +   + + + +++ G   D    N+++N  C+ G V   
Sbjct: 144 PIPP---MYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEA 200

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L ++       D V++ +++KGLC   R  +   L  ++    C PN++T++TLI  
Sbjct: 201 VGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTFNTLIGY 260

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LCR G       +  +M+         C P+   Y TIIDG+CKEG ++ A E+  +M  
Sbjct: 261 LCRNGLFERVHEVLAQMSEHG------CTPDIRMYATIIDGICKEGHLEVANEILNRMPS 314

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VV YN+++ G C A  W EA  LL EM  +    D VTFN+++D  C+NG +D 
Sbjct: 315 YGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKDCPLDDVTFNILVDFFCQNGLVDR 374

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              LLE M+  G  P+  T++T+++GFC  G ++ A  L  SM S GCK    SY
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSY 429



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++ S G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 357 VTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKS 416

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ V++T ++KGLC+  R ++A  L +++   GC PN +T++TLIN LC+ G 
Sbjct: 417 MSSCGCKPNTVSYTIVLKGLCSAGRWVDAEELMSQMIQQGCPPNPVTFNTLINFLCKKGL 476

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I+P
Sbjct: 477 VEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISP 529

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N+   +   + D  ++ D V +N ++  LCK  + D A    
Sbjct: 530 NTIIYSSIACALSREGRVNKVIQMFDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFF 589

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G    A+EL   + S G
Sbjct: 590 AYMVSNGCMPNESTYTMLIKGLASEGLAKEAQELLSELCSRG 631



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 55/219 (25%), Positives = 92/219 (42%), Gaps = 9/219 (4%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           VA+ +++ G C   R  + AA      A    PN  T+  ++ GLC  G    AL + +E
Sbjct: 80  VAYNAMVAGYC---RAGQLAAARRLAAAVPVPPNAYTFFPVVRGLCTRGRIADALEVLDE 136

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+         C P    Y  I++  C+ G    +  +   M  K    D    N +++ 
Sbjct: 137 MSFKG------CAPIPPMYHVILEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCNLVLNA 190

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C     +EA  LL ++   G + D+V++N ++  LC   +  +   L++ M+     PN
Sbjct: 191 ICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMVRVDCAPN 250

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             TF+TL+   C  G      E+   M   GC   +  Y
Sbjct: 251 IVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMY 289



 Score = 70.9 bits (172), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 12/215 (5%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI+ LC+  R  EAA              V+ Y+ ++ G CR G    A  L       
Sbjct: 52  ALIRSLCSAGRTAEAARALADAGD---AAGVVAYNAMVAGYCRAGQLAAARRLAAA---- 104

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                V   PN  T+  ++ GLC  G +  A E+  +M  K   P    Y+ ++   C +
Sbjct: 105 -----VPVPPNAYTFFPVVRGLCTRGRIADALEVLDEMSFKGCAPIPPMYHVILEAACRS 159

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             +  +  +L  M  +G   D    N++++ +C+ G +DEA  LL  +   G   +  ++
Sbjct: 160 GGFRNSVRVLEAMHAKGCTLDTGNCNLVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSY 219

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++ G C+  R    +EL   M  + C   + ++
Sbjct: 220 NAVLKGLCMAKRWGDVEELMDEMVRVDCAPNIVTF 254



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 57/134 (42%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    +  L L   + + G+ P+   Y+ +     + GRV+    +
Sbjct: 494 PDLISYSTVIDGLGKAGKTEEALELLNVMVNKGISPNTIIYSSIACALSREGRVNKVIQM 553

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A   F  + + GC PN  TY+ LI GL  
Sbjct: 554 FDNIKDTTIRSDAVLYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTMLIKGLAS 613

Query: 225 TGHTIVALNLFEEM 238
            G    A  L  E+
Sbjct: 614 EGLAKEAQELLSEL 627


>gi|410109955|gb|AFV61057.1| pentatricopeptide repeat-containing protein 11, partial [Phyla
           nodiflora]
          Length = 431

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G  P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN+VT+TT+IDG CK G+VD A E++ QM  +++ PD+VTYN+LI+
Sbjct: 237 EMLEK----GLV--PNSVTFTTLIDGHCKNGWVDLAMEIYKQMLSQSLLPDLVTYNALIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM   G++PD +T+  ++D  CK G +D A    ++MI   +  
Sbjct: 291 GLCKKGDLKQAHDLIDEMSMXGLKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTRTY 390



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/291 (33%), Positives = 156/291 (53%), Gaps = 16/291 (5%)

Query: 79  QGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           +GDI       A  +FD +    +RPS   + S+N L     +    D    L   ++++
Sbjct: 155 EGDIRV-----AQSVFDAITKWGLRPS---VVSYNTLMNGYIRLGDLDEGFRLKSAMHAS 206

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ PD+YTY++LIN  CK  ++     +   +L     P++V FT+LI G C    +  A
Sbjct: 207 GVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHCKNGWVDLA 266

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             ++ ++ +    P+++TY+ LI GLC+ G    A +L +EM+          KP+ +TY
Sbjct: 267 MEIYKQMLSQSLLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXG------LKPDKITY 320

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+IDG CKEG +D A E    M  +NI  D V Y +LI G C      +A  +L EM+ 
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLS 380

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
            G++PD  T+ +I++E CK G + + S+LL+ M   G  P+  T++ LM+G
Sbjct: 381 VGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMHASGVHPDVYTYSVLINGLCKESKMDDANKLFDEMLEKGLVPNSVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ VTY  +I GLCK+G + +A +L  +M    
Sbjct: 259 KNGWVDLAMEIYKQMLSQS------LLPDLVTYNALIYGLCKKGDLKQAHDLIDEMSMXG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKMMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDTRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425


>gi|255660830|gb|ACU25584.1| pentatricopeptide repeat-containing protein [Xeroaloysia
           ovatifolia]
          Length = 418

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L T + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCRKGDLKQARDLIDEMSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 345 DDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITY 384



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/256 (35%), Positives = 141/256 (55%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     +    D    L   ++++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKTAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLCR
Sbjct: 229 FDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCR 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 289 KGDLKQARDLIDEMSMKG------LKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C    + +A  +L EM+  G++PD +T+ +I++E CK G +   S+
Sbjct: 343 QLDDVGYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           LL+ M   G  P+  T
Sbjct: 403 LLKEMQRDGQMPSVVT 418



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 153/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHKFCKDGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKTAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLC++G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCRKGDLKQARDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + +Q D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGRYLDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score = 46.6 bits (109), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 49/117 (41%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++M+   P   ++  L     K    +T     KR+    +  D   Y  LI+  C+ GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGXCKEGDLETAFEHRKRMIQENIQLDDVGYTALISGLCQEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
                 VL  +L     PD + +T +I   C +  +   + L  +++  G  P+V+T
Sbjct: 362 YLDAEKVLREMLSVGLKPDTITYTMIINEFCKKGDVWTGSKLLKEMQRDGQMPSVVT 418


>gi|242089061|ref|XP_002440363.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
 gi|241945648|gb|EES18793.1| hypothetical protein SORBIDRAFT_09g030360 [Sorghum bicolor]
          Length = 715

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 166/325 (51%), Gaps = 23/325 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD----------------TVLSLFK 131
           ++A+ +F  ML  +  PP + ++N +   L K +  D                  + L K
Sbjct: 156 DKAYTLFHEMLG-QGFPPNIVTYNSVIDGLCKAQAMDKAEAVLQQMFDKGQLEEAVRLLK 214

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           +++  GL PD+ TY++LI+ +CK+GR +    +   ++R    PDA  + +L+ G   + 
Sbjct: 215 KMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKG 274

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
            +++   L   +   G       ++ LI    +      A+  F EM            P
Sbjct: 275 ALVDMHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIEMRQKG------FSP 328

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N VTYTT+ID LCK G V+ A   F QM  + ++PD++T+ SLIHG C   +W +   L 
Sbjct: 329 NVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGEWKKVEKLS 388

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM+++G+ P+ +  N IMD LCK G++ EA    + +I  GV P+  +++ L+DG+CL 
Sbjct: 389 FEMINRGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLD 448

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G+++ + +L   M S+G +    +Y
Sbjct: 449 GKMDESIKLLGRMVSIGLRPDNVTY 473



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 104/349 (29%), Positives = 173/349 (49%), Gaps = 21/349 (6%)

Query: 62  DRASLEQFLKERCKSSGQG---DITAITP-----------NEAFCIFDYMLNMRPSPPPL 107
           D+  LE+ ++   K SG G   D+   +             EA  IFD M+    +P   
Sbjct: 202 DKGQLEEAVRLLKKMSGGGLQPDVVTYSLLIDYYCKIGRCTEARNIFDSMVRRGQNPDAY 261

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T   LL G   K    D +  L   +   G+  + + +NILI  + K   +         
Sbjct: 262 TYRTLLHGYATKGALVD-MHDLLALMIQDGIPLEDHVFNILIRAYAKNETLDKAMTAFIE 320

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + +  F+P+ V +T++I  LC   R+ +A + F+++ + G  P++IT+++LI+GLC  G 
Sbjct: 321 MRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMVSEGLSPDIITFTSLIHGLCTIGE 380

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
                 L  EM N          PN +   TI+D LCKEG V +A + F Q+    + PD
Sbjct: 381 WKKVEKLSFEMINRG------IHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPD 434

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VV+Y  LI G+C     +E+  LL  M+  G++PD VT++ +++  CKNG++D+A  L  
Sbjct: 435 VVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYR 494

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M  + V PN  T++ ++ G    GRV  A+E ++ +   G +  + +Y
Sbjct: 495 EMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGIQLGINTY 543



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/310 (28%), Positives = 151/310 (48%), Gaps = 41/310 (13%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+L    AK +  D  ++ F  +   G  P++ TY  +I+  CK GRV        +++
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 170 RSCFTPDAVAFTSLIKGLCA-----------------------------------ESRIM 194
               +PD + FTSLI GLC                                    E R++
Sbjct: 358 SEGLSPDIITFTSLIHGLCTIGEWKKVEKLSFEMINRGIHPNAIFLNTIMDSLCKEGRVL 417

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA   F ++   G KP+V++Y+ LI+G C  G    ++ L   M +      +  +P+ V
Sbjct: 418 EAHDFFDQIIHVGVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVS------IGLRPDNV 471

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY+ +++G CK G VD A  L+ +M  K++ P+ +TYN ++HG  +A     A    +++
Sbjct: 472 TYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKI 531

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +D G+Q  + T+N+++  LC+N  +DEA R+ + +  +       TF+ ++ G    GR+
Sbjct: 532 VDSGIQLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRI 591

Query: 375 NHAKELFVSM 384
             AK LF ++
Sbjct: 592 GDAKSLFSAI 601



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 167/371 (45%), Gaps = 55/371 (14%)

Query: 65  SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
            LE+ + E+ +S   G        +A  +FD +L  R     + +FN +   +A   H D
Sbjct: 14  QLERIIVEQHRSGSLG------LEDALNLFDELLP-RARSASVHAFNRVLTVVA---HGD 63

Query: 125 T----------VLSLFKRLNSTG---LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           +           +SLF  +   G   L  D  T+ ILI CFC +G +        R  R+
Sbjct: 64  SSSSQRHGAALAVSLFNTMAQVGVNKLATDACTFGILIRCFCNVGLLDFALEEESRGSRA 123

Query: 172 CFT----------PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
                        P+ +++  +I GL  E  + +A  LF ++   G  PN++TY+++I+G
Sbjct: 124 AVHMMADDGYNCPPNVLSYNMVINGLFKEGEVDKAYTLFHEMLGQGFPPNIVTYNSVIDG 183

Query: 222 LCRT----------------GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           LC+                 G    A+ L ++M+ G        +P+ VTY+ +ID  CK
Sbjct: 184 LCKAQAMDKAEAVLQQMFDKGQLEEAVRLLKKMSGGG------LQPDVVTYSLLIDYYCK 237

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G   +A+ +F  M  +  NPD  TY +L+HG+       + + LL  M+  G+  +   
Sbjct: 238 IGRCTEARNIFDSMVRRGQNPDAYTYRTLLHGYATKGALVDMHDLLALMIQDGIPLEDHV 297

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN+++    KN  +D+A      M  +G +PN  T++T++D  C  GRV  A   F  M 
Sbjct: 298 FNILIRAYAKNETLDKAMTAFIEMRQKGFSPNVVTYTTVIDILCKAGRVEDAVSHFSQMV 357

Query: 386 SMGCKHTVFSY 396
           S G    + ++
Sbjct: 358 SEGLSPDIITF 368



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 134/281 (47%), Gaps = 7/281 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+N R   P     N +   L K          F ++   G+ PD+ +Y ILI+ +C  G
Sbjct: 391 MIN-RGIHPNAIFLNTIMDSLCKEGRVLEAHDFFDQIIHVGVKPDVVSYTILIDGYCLDG 449

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++     +LGR++     PD V +++L+ G C   R+ +A AL+ ++ +   KPN ITY+
Sbjct: 450 KMDESIKLLGRMVSIGLRPDNVTYSALLNGYCKNGRVDDALALYREMFSKDVKPNAITYN 509

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            +++GL   G  + A   + ++ +   + G+       TY  ++ GLC+  FVD+A  +F
Sbjct: 510 IILHGLFHAGRVVAAREFYMKIVDSGIQLGIN------TYNIVLGGLCENSFVDEALRMF 563

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             ++ K    +V T+N +I G        +A  L   ++  G+ PD + + +++    + 
Sbjct: 564 QGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKSLFSAILPSGLVPDAIIYGLMIQSHIEE 623

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G ++E+  L   M   G   N+ T + ++      G V  A
Sbjct: 624 GLLEESDELFLSMEKNGCTANSRTLNAIVRKLLEKGDVRRA 664



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 58/255 (22%), Positives = 107/255 (41%), Gaps = 30/255 (11%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   FD ++++    P + S+ +L          D  + L  R+ S GL PD  TY+ L
Sbjct: 418 EAHDFFDQIIHV-GVKPDVVSYTILIDGYCLDGKMDESIKLLGRMVSIGLRPDNVTYSAL 476

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N +CK GRV     +   +      P+A+ +  ++ GL    R++ A   + K+   G 
Sbjct: 477 LNGYCKNGRVDDALALYREMFSKDVKPNAITYNIILHGLFHAGRVVAAREFYMKIVDSGI 536

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN-----------------------GNGK- 244
           +  + TY+ ++ GLC       AL +F+ + +                       G+ K 
Sbjct: 537 QLGINTYNIVLGGLCENSFVDEALRMFQGLRSKEFQLEVRTFNIMIVGLLKVGRIGDAKS 596

Query: 245 -FGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
            F  +      P+ + Y  +I    +EG ++++ ELFL M+      +  T N+++    
Sbjct: 597 LFSAILPSGLVPDAIIYGLMIQSHIEEGLLEESDELFLSMEKNGCTANSRTLNAIVRKLL 656

Query: 300 YANDWNEANCLLIEM 314
              D   A   L ++
Sbjct: 657 EKGDVRRAGTYLTKI 671


>gi|357499275|ref|XP_003619926.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494941|gb|AES76144.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 727

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 106/303 (34%), Positives = 156/303 (51%), Gaps = 5/303 (1%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN--CFCKM 155
           +N   S   L  FN    CL KT  + T ++LF + N    F       + I   CF  +
Sbjct: 27  INSFHSHSSLAHFNKHLTCLMKTNQHSTAIALFNQ-NEYNNFITPCIITLTIIITCFFHL 85

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G VS  F + G+IL+  +  D VA  +++KGLC    +++A     ++   G   N ++Y
Sbjct: 86  GHVSFSFSIFGKILKRGYGLDTVALNTVLKGLCVNGGVLKALEFHDEIVNNGFSLNEVSY 145

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKF--GVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
             LINGLC  G    A+NL   +     K   G   K N V Y+ +ID LC+ GFVD+  
Sbjct: 146 GILINGLCENGRVNEAVNLLRMIEKEKEKEKDGFFVKGNVVMYSIVIDCLCRNGFVDEGF 205

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           E + +M    + P+  TY SLI G C    + E   L+ EM+ +G+   V  F V++D L
Sbjct: 206 EFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLVDEMIRRGLDVSVYVFTVLIDGL 265

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CKNG + EA  + + M+ RG  PN  T + LM G+CL G V+ A+ELF ++   G K  V
Sbjct: 266 CKNGMLVEAREMFDEMVNRGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDV 325

Query: 394 FSY 396
           ++Y
Sbjct: 326 WTY 328



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 148/297 (49%), Gaps = 7/297 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+N R   P + +   L G      + D    LF  +   G   D++TYN+ 
Sbjct: 273 EAREMFDEMVN-RGYEPNIVTCTALMGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVF 331

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK+GRV     V   + R    P+ V + SLI  LC    +  A  +   +   G 
Sbjct: 332 IHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGL 391

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++T   L++GLC++     A+ LF ++            P+  +YT +I G C    
Sbjct: 392 TPDIVTCCILLDGLCKSKRLDQAILLFNQLVESG------LTPDVWSYTILIHGCCTSRR 445

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A  L   M  KN+ P +VTY+ LI G C +   + A  LL EM  +G  PD +T+++
Sbjct: 446 MGEAMNLLRDMHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSI 505

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++D L K   +DEA  L   MI RG+ P+   ++ ++DG+C + R++ A  LF  M 
Sbjct: 506 LLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMH 562



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/256 (33%), Positives = 138/256 (53%), Gaps = 6/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++  Y+I+I+C C+ G V  GF     ++ +   P+   + SLI+GLC   + +E   L 
Sbjct: 184 NVVMYSIVIDCLCRNGFVDEGFEFYNEMMGNGVCPNEFTYGSLIRGLCGVGKFLEGFGLV 243

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   G   +V  ++ LI+GLC+ G  + A  +F+EM N         +PN VT T ++
Sbjct: 244 DEMIRRGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRG------YEPNIVTCTALM 297

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G C +G VD A+ELF  + +     DV TYN  IHG+C      +A  +  EM  +GV 
Sbjct: 298 GGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGVV 357

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P++VT+N ++D LCK G++  A  +++ M   G+ P+  T   L+DG C + R++ A  L
Sbjct: 358 PNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSGLTPDIVTCCILLDGLCKSKRLDQAILL 417

Query: 381 FVSMESMGCKHTVFSY 396
           F  +   G    V+SY
Sbjct: 418 FNQLVESGLTPDVWSY 433



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/264 (31%), Positives = 139/264 (52%), Gaps = 6/264 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N+      K       + +F  +   G+ P++ TYN LI+C CK G VS  + ++  +
Sbjct: 327 TYNVFIHGYCKVGRVRDAVRVFDEMCREGVVPNIVTYNSLIDCLCKAGEVSGAWEIVKTM 386

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            RS  TPD V    L+ GLC   R+ +A  LF +L   G  P+V +Y+ LI+G C +   
Sbjct: 387 HRSGLTPDIVTCCILLDGLCKSKRLDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRM 446

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+NL  +M   N        P+ VTY+ +IDGLC+ G +  A  L  +M  K   PD 
Sbjct: 447 GEAMNLLRDMHLKN------LVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDT 500

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +TY+ L+         +EA  L  +M+ +G++PDV+ + +++D  CK+ ++DEA  L   
Sbjct: 501 ITYSILLDALWKKQHLDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFRE 560

Query: 349 MILRGVNPNTSTFSTLMDGFCLTG 372
           M ++ + P+  T++ L +    +G
Sbjct: 561 MHMKNLVPDIVTYTILFNAVFKSG 584



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 147/308 (47%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E F + D M+  R     +  F +L   L K         +F  + + G  P++ T   L
Sbjct: 238 EGFGLVDEMIR-RGLDVSVYVFTVLIDGLCKNGMLVEAREMFDEMVNRGYEPNIVTCTAL 296

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +C  G V     +   I    F  D   +   I G C   R+ +A  +F ++   G 
Sbjct: 297 MGGYCLKGNVDMARELFDAIGEWGFKRDVWTYNVFIHGYCKVGRVRDAVRVFDEMCREGV 356

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN++TY++LI+ LC+ G    A  + + M            P+ VT   ++DGLCK   
Sbjct: 357 VPNIVTYNSLIDCLCKAGEVSGAWEIVKTMHRSG------LTPDIVTCCILLDGLCKSKR 410

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  LF Q+ +  + PDV +Y  LIHG C +    EA  LL +M  + + P +VT++ 
Sbjct: 411 LDQAILLFNQLVESGLTPDVWSYTILIHGCCTSRRMGEAMNLLRDMHLKNLVPHIVTYSC 470

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC++G++  A RLL  M ++G  P+T T+S L+D       ++ A  LF  M   G
Sbjct: 471 LIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQHLDEAVFLFNQMIKRG 530

Query: 389 CKHTVFSY 396
            +  V  Y
Sbjct: 531 LEPDVMCY 538



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/129 (23%), Positives = 63/129 (48%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++++   P + +++ L   L ++        L   ++  G  PD  TY+IL++   K   
Sbjct: 456 MHLKNLVPHIVTYSCLIDGLCRSGRISNAWRLLNEMHVKGPLPDTITYSILLDALWKKQH 515

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +  ++++    PD + +T +I G C   RI EA  LF ++      P+++TY+ 
Sbjct: 516 LDEAVFLFNQMIKRGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTI 575

Query: 218 LINGLCRTG 226
           L N + ++G
Sbjct: 576 LFNAVFKSG 584



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F+ M+  R   P +  + ++     K++  D  ++LF+ ++   L PD+ TY I
Sbjct: 517 DEAVFLFNQMIK-RGLEPDVMCYTIMIDGYCKSERIDEAINLFREMHMKNLVPDIVTYTI 575

Query: 148 LINCFCKMGRVSHGF 162
           L N   K G  S+ +
Sbjct: 576 LFNAVFKSGSNSYEW 590


>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
 gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
          Length = 932

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 162/321 (50%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T+FN L   L K         LF ++   G+ P+L+T+NI I   CK G +     +
Sbjct: 293 PDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAVRL 352

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG + R    PD V + ++I GLC +SR++EA     K+   G +PN  TY+++I+G C+
Sbjct: 353 LGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCK 412

Query: 225 TGHTIVALNLFEE-----------------------------MANGNGKFGVVCKPNTVT 255
            G  + A  + ++                             MA      G   +P+ + 
Sbjct: 413 KGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIV 472

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+I GLC++G +  A +L  +M +K   PD+ TYN +I+G C     ++AN L+ + +
Sbjct: 473 YNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMGCLSDANHLIGDAI 532

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G  PD+ T+N ++D  C+  K+D A  L+  M  +G+ P+  T++TL++G C T +  
Sbjct: 533 TKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSE 592

Query: 376 HAKELFVSMESMGCKHTVFSY 396
              E+F +M   GC   + +Y
Sbjct: 593 EVMEIFKAMTEKGCAPNIITY 613



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 8/293 (2%)

Query: 105 PPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + ++N ++ G   K++  +    L K +N  G  P+ +TYN +I+ +CK G V     
Sbjct: 363 PDVVTYNTVICGLCRKSRVVEAEECLHKMVNG-GFEPNDFTYNSIIDGYCKKGMVVDANR 421

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L   +   F PD   + SL+ G C +    +A A+F      G +P++I Y+TLI GLC
Sbjct: 422 ILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLC 481

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + AL L  EMA         CKP+  TY  II+GLCK G +  A  L      K 
Sbjct: 482 QQGLILPALQLMNEMAEKG------CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKG 535

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD+ TYN+L+ G+C     + A  L+  M  QG+ PDV+T+N +++ LCK  K +E  
Sbjct: 536 CIPDIFTYNTLVDGYCRQLKLDSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVM 595

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + + M  +G  PN  T++T+++  C + +VN A +L   M+S G    V S+
Sbjct: 596 EIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDLLGEMKSKGLTPDVVSF 648



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/329 (29%), Positives = 155/329 (47%), Gaps = 47/329 (14%)

Query: 87  PNEAFCIFDYMLN--MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           P++A  +F   L   +RPS   +  +N L   L +       L L   +   G  PD++T
Sbjct: 451 PDQAMAVFKDGLGKGLRPS---IIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWT 507

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           YN++IN  CKMG +S    ++G  +     PD   + +L+ G C + ++  A  L  ++ 
Sbjct: 508 YNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAIELVNRMW 567

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           + G  P+VITY+TL+NGLC+T  +   + +F+ M          C PN +TY TII+ LC
Sbjct: 568 SQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKG------CAPNIITYNTIIESLC 621

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL------------- 311
               V++A +L  +MK K + PDVV++ +LI GFC   D + A  L              
Sbjct: 622 NSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTT 681

Query: 312 -----------------------IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
                                   EM   G  PD  T+ V++D  CK G +++  + L  
Sbjct: 682 ATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLLE 741

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            I +G  P+ +TF  +++  C+  +V  A
Sbjct: 742 NIEKGFIPSLTTFGRVLNCLCVEHKVQEA 770



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 139/273 (50%), Gaps = 6/273 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    LF  +    L PD+ T+N L++  CK G V     +  ++L+    P+   F   
Sbjct: 277 DRARELFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIF 336

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I+GLC E  +  A  L   +   G +P+V+TY+T+I GLCR    + A     +M NG  
Sbjct: 337 IQGLCKEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGG- 395

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                 +PN  TY +IIDG CK+G V  A  +      K   PD  TY SL++GFC   D
Sbjct: 396 -----FEPNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGD 450

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            ++A  +  + + +G++P ++ +N ++  LC+ G +  A +L+  M  +G  P+  T++ 
Sbjct: 451 PDQAMAVFKDGLGKGLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTYNL 510

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++G C  G ++ A  L     + GC   +F+Y
Sbjct: 511 IINGLCKMGCLSDANHLIGDAITKGCIPDIFTY 543



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 161/344 (46%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F+ M ++    P + S+N +   L +  +++    ++ R+    +  D+YTY I
Sbjct: 172 QEAVDTFERM-DLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYTYTI 230

Query: 148 LINCFCKMGR-------------------------VSHGFVVLG----------RILRSC 172
            I  FC+ GR                         V  GF   G           +L  C
Sbjct: 231 RIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECC 290

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD   F  L+  LC +  ++E+  LF K+   G  PN+ T++  I GLC+ G    A+
Sbjct: 291 LCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLCKEGSLDRAV 350

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L   ++          +P+ VTY T+I GLC++  V +A+E   +M +    P+  TYN
Sbjct: 351 RLLGCVSREG------LRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYN 404

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           S+I G+C      +AN +L + + +G +PD  T+  +++  C++G  D+A  + +  + +
Sbjct: 405 SIIDGYCKKGMVVDANRILKDAVFKGFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGK 464

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+ P+   ++TL+ G C  G +  A +L   M   GCK  +++Y
Sbjct: 465 GLRPSIIVYNTLIKGLCQQGLILPALQLMNEMAEKGCKPDIWTY 508



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/296 (27%), Positives = 136/296 (45%), Gaps = 54/296 (18%)

Query: 105 PPLTSFNLLF------GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           P + ++NL+       GCL+   H      L     + G  PD++TYN L++ +C+  ++
Sbjct: 503 PDIWTYNLIINGLCKMGCLSDANH------LIGDAITKGCIPDIFTYNTLVDGYCRQLKL 556

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                ++ R+     TPD + + +L+ GLC  ++  E   +F  +   GC PN+ITY+T+
Sbjct: 557 DSAIELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTI 616

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK----- 273
           I  LC +     A++L  EM +          P+ V++ T+I G CK G +D A      
Sbjct: 617 IESLCNSKKVNEAVDLLGEMKSKG------LTPDVVSFGTLITGFCKVGDLDGAYGLFRG 670

Query: 274 -------------------------------ELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                                           LF +MK    +PD  TY  LI GFC   
Sbjct: 671 MEKQYDVSHTTATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTG 730

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           + N+    L+E +++G  P + TF  +++ LC   K+ EA  ++ LM+ + + P+T
Sbjct: 731 NVNQGYKFLLENIEKGFIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDT 786



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 7/221 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L KT   + V+ +FK +   G  P++ TYN +I   C   +V+    +
Sbjct: 573 PDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESLCNSKKVNEAVDL 632

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
           LG +     TPD V+F +LI G C    +  A  LF  + K +       TY+ +I+   
Sbjct: 633 LGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHTTATYNIIISAFS 692

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
              +  +AL LF EM   NG     C P+  TY  +IDG CK G V++  +  L+  +K 
Sbjct: 693 EQLNMKMALRLFSEMKK-NG-----CDPDNYTYRVLIDGFCKTGNVNQGYKFLLENIEKG 746

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
             P + T+  +++  C  +   EA  ++  M+ + + PD V
Sbjct: 747 FIPSLTTFGRVLNCLCVEHKVQEAVGIIHLMVQKDIVPDTV 787



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 112/242 (46%), Gaps = 41/242 (16%)

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGL--------------------------- 222
           + +I EA   F ++  F C P+V +Y+ ++N L                           
Sbjct: 168 KGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDVYT 227

Query: 223 --------CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
                   CRTG    AL L   M        + C  N V Y T++ G  + G  D+A+E
Sbjct: 228 YTIRIKSFCRTGRPYAALRLLRNMPV------LGCFSNAVAYCTVVTGFYEFGDNDRARE 281

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF +M +  + PDV T+N L+H  C      E+  L  +++ +GV P++ TFN+ +  LC
Sbjct: 282 LFDEMLECCLCPDVTTFNKLVHALCKKGFVLESERLFDKVLKRGVCPNLFTFNIFIQGLC 341

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G +D A RLL  +   G+ P+  T++T++ G C   RV  A+E    M + G +   F
Sbjct: 342 KEGSLDRAVRLLGCVSREGLRPDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDF 401

Query: 395 SY 396
           +Y
Sbjct: 402 TY 403



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 11/181 (6%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL--- 263
           G K  + TY +++  L   G      NL  EM +           NT+     ++ +   
Sbjct: 114 GFKHTLFTYKSMLQKLGFHGKFNEMENLLSEMRSN--------LDNTLLEGVYVEAMRFY 165

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            ++G + +A + F +M   N +P V +YN++++       +N+A+ + + M D+ V+ DV
Sbjct: 166 GRKGKIQEAVDTFERMDLFNCDPSVYSYNAIMNILVEFGYFNQAHKVYMRMKDKKVESDV 225

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T+ + +   C+ G+   A RLL  M + G   N   + T++ GF   G  + A+ELF  
Sbjct: 226 YTYTIRIKSFCRTGRPYAALRLLRNMPVLGCFSNAVAYCTVVTGFYEFGDNDRARELFDE 285

Query: 384 M 384
           M
Sbjct: 286 M 286


>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1043

 Score =  176 bits (445), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/338 (31%), Positives = 167/338 (49%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +F  M       P L ++  L   L K +  D  L +F  L  + L PD + YNI
Sbjct: 650 DQALDVFGRM-KEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNI 708

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N   K  RV     ++  +      PD   +TSL+ GL    R+ EA  +FTK+   G
Sbjct: 709 MVNGLVKSNRVDEACKLVDSMKNQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVV---- 248
            +P+V+ Y++L++ L + G    AL +F  MA                  GK G V    
Sbjct: 769 HEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAY 828

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                     C PN   Y+++ID   K+G VD+A ELF +M+ +   P++VTYN+L+ G 
Sbjct: 829 YFFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLSGL 888

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             A   N A  LL EM   G  PD+VT+N+++D + K G +DEA    + M  +G+ P+ 
Sbjct: 889 AKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDV 948

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            TF++L++      ++  A ELF SME  G   +V +Y
Sbjct: 949 ITFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTY 986



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 7/302 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +EA  + D M N    P   T  +LL G L K+   +   ++F ++   G  PD+  Y  
Sbjct: 720  DEACKLVDSMKNQNILPDLFTYTSLLDG-LGKSGRLEEAFNMFTKMTEEGHEPDVVAYTS 778

Query: 148  LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            L++   K G++SH  ++   + +    PD V ++SLI  L  E R+ EA   F    + G
Sbjct: 779  LMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYYFFENSISKG 838

Query: 208  CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            C PNV  YS+LI+   + G    AL LFEEM          C PN VTY  ++ GL K G
Sbjct: 839  CTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQ------CPPNIVTYNNLLSGLAKAG 892

Query: 268  FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++ A++L  +M+     PD+VTYN LI G       +EA      M ++G+ PDV+TF 
Sbjct: 893  RLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFKRMKEKGIVPDVITFT 952

Query: 328  VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             +++ L K  K+ EA  L + M   G NP+  T++ L+D     G+V+ A  +F  M+  
Sbjct: 953  SLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEMKVK 1012

Query: 388  GC 389
            GC
Sbjct: 1013 GC 1014



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L     K    +  LSLF  +   G   D+ TY+++INC CK   V     V
Sbjct: 596 PSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYSLVINCLCKSDDVDQALDV 655

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            GR+      P    + +L+  L  + +I  A  +F +L+     P+   Y+ ++NGL +
Sbjct: 656 FGRMKEEGMEPLLGNYKTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVK 715

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L + M N N        P+  TYT+++DGL K G +++A  +F +M ++  
Sbjct: 716 SNRVDEACKLVDSMKNQN------ILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGH 769

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV Y SL+         + A  +   M  +   PDVVT++ ++D L K G+++EA  
Sbjct: 770 EPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSLGKEGRVEEAYY 829

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             E  I +G  PN   +S+L+D F   G V+ A ELF  M+   C   + +Y
Sbjct: 830 FFENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTY 881



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/288 (30%), Positives = 144/288 (50%), Gaps = 9/288 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R S   LTS    FG    T +    L +F ++ S G  P    YN ++    K G    
Sbjct: 214 RISMHLLTSLLRTFGS---TNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHS 270

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             +V G++ +    PDA  F   +       R+  AA    ++   G  P V T++ LI+
Sbjct: 271 AVIVFGKLGQFRIQPDAQTFRIFVHSFNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLID 330

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            L ++G+   A   F  M N      + C PN VTYTT+++GL K G +++A E+F++MK
Sbjct: 331 ALVKSGNIDEACKFFNGMKN------LRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMK 384

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           + N +PD + YN+LI G   A + + A  L  EM D+G+ P++ T+N+++  L K G+  
Sbjct: 385 ENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQP 444

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           EA +L   +  +G  P+  T++TL+D     G+++    +   M   G
Sbjct: 445 EAWQLFHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKG 492



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 166/374 (44%), Gaps = 73/374 (19%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG----------- 137
           EA+ +F + L  + + P + ++N L   L K    D VL++ K +   G           
Sbjct: 445 EAWQLF-HDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNA 503

Query: 138 -------------LFPDL-------YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
                         +P L        TYN L++ F   G V     +L  + +    P  
Sbjct: 504 GHEGTIEGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTV 563

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V +T+L+ GL    R+ EA +L  +++  GC+P+V+TYS+L+    +      +L+LF+E
Sbjct: 564 VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDE 623

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP----------- 286
           M          C  +  TY+ +I+ LCK   VD+A ++F +MK++ + P           
Sbjct: 624 MVRKG------CVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSS 677

Query: 287 ------------------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
                                   D   YN +++G   +N  +EA  L+  M +Q + PD
Sbjct: 678 LVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMKNQNILPD 737

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           + T+  ++D L K+G+++EA  +   M   G  P+   +++LMD     G+++HA  +F 
Sbjct: 738 LFTYTSLLDGLGKSGRLEEAFNMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFR 797

Query: 383 SMESMGCKHTVFSY 396
           +M    C   V +Y
Sbjct: 798 AMAKKRCVPDVVTY 811



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 141/323 (43%), Gaps = 37/323 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L K    D    LFK +   GL P+L TYNI+I+   K GR    + +
Sbjct: 390 PDAIAYNTLIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQL 449

Query: 165 LGRILRSCFTPDAVAFTSLIK----------------------GLCAESR--------IM 194
              +      PD   + +LI                       G C  SR         +
Sbjct: 450 FHDLKEQGAVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTI 509

Query: 195 EAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           E A    +  + G K    ITY+TL++     GH   A+ L E M          C P  
Sbjct: 510 EGADRTVEYPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHE------CIPTV 563

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTYTT++DGL K G +D+A  L  +M+ +   P VVTY+SL+  F   +   E+  L  E
Sbjct: 564 VTYTTLVDGLGKAGRLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDE 623

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+ +G   DV T++++++ LCK+  +D+A  +   M   G+ P    + TL+       +
Sbjct: 624 MVRKGCVADVSTYSLVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNYKTLLSSLVKDEK 683

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           ++ A ++F  ++        F Y
Sbjct: 684 IDFALQIFNELQESSLVPDTFVY 706



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 147/334 (44%), Gaps = 26/334 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA   F+ M N+R SP  +T   L+ G LAK    +    +F  +      PD   YN 
Sbjct: 339 DEACKFFNGMKNLRCSPNVVTYTTLVNG-LAKAGRLEEACEVFVEMKENNCSPDAIAYNT 397

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K G       +   +      P+   +  +I  L    R  EA  LF  LK  G
Sbjct: 398 LIDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQG 457

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT-------------- 253
             P+V TY+TLI+ L + G     L + +EM    G+  +    N               
Sbjct: 458 AVPDVFTYNTLIDVLGKGGQMDKVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVE 517

Query: 254 -----------VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                      +TY T++      G VD+A +L   MK     P VVTY +L+ G   A 
Sbjct: 518 YPSLGFKSLGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLVDGLGKAG 577

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             +EA  LL EM  QG +P VVT++ +M    K  + +E+  L + M+ +G   + ST+S
Sbjct: 578 RLDEAVSLLREMEKQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGCVADVSTYS 637

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++  C +  V+ A ++F  M+  G +  + +Y
Sbjct: 638 LVINCLCKSDDVDQALDVFGRMKEEGMEPLLGNY 671



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/307 (25%), Positives = 136/307 (44%), Gaps = 6/307 (1%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A C F +          + ++ L+   LA  +  D V+ +   +   G    ++    L+
Sbjct: 165 AKCFFTWAGQQDGYSHTVGTYTLMIKRLAGAQETDAVVQILTAMWKEGHRISMHLLTSLL 224

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             F     VS    +  ++      P    +  +++ L        A  +F KL  F  +
Sbjct: 225 RTFGSTNNVSGALEIFNQMKSFGCNPSTNMYNFVLELLVKGGFYHSAVIVFGKLGQFRIQ 284

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+  T+   ++   R+G    A    +EM     K G+   P   T+T +ID L K G +
Sbjct: 285 PDAQTFRIFVHSFNRSGRLDPAAEPIQEMI----KSGI--DPGVHTFTVLIDALVKSGNI 338

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A + F  MK+   +P+VVTY +L++G   A    EA  + +EM +    PD + +N +
Sbjct: 339 DEACKFFNGMKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTL 398

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D L K G+ D A  L + M  RG+ PN  T++ ++      GR   A +LF  ++  G 
Sbjct: 399 IDGLGKAGEADMACGLFKEMKDRGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLKEQGA 458

Query: 390 KHTVFSY 396
              VF+Y
Sbjct: 459 VPDVFTY 465


>gi|224103961|ref|XP_002313262.1| predicted protein [Populus trichocarpa]
 gi|222849670|gb|EEE87217.1| predicted protein [Populus trichocarpa]
          Length = 559

 Score =  176 bits (445), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 158/293 (53%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +   L K K  +  + L   +  +   P+ +TY IL++  CK GRV     +
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG + R     D V +++LI G C++  +    ALF ++   G  PNV+ YS LING C+
Sbjct: 68  LGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCLINGFCK 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +   M     + G+  +P+  TYT +I GLCK+G   KA +LF  M +K  
Sbjct: 128 KGLWREATAVLHTMT----ERGI--QPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  VTYN LI+G C      +A  +   M+++G + +VV++N ++  LC NGK+DEA +
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMK 241

Query: 345 LLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           L   ++  G  V P+  TF+T++ G C  GR++ A E++ +M   G    +F+
Sbjct: 242 LFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFT 294



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/222 (36%), Positives = 131/222 (59%), Gaps = 6/222 (2%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD V++ ++I GLC E R+ +A  L  +++   C+PN  TY  L++GLC+ G    A+ L
Sbjct: 8   PDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCKEGRVEEAMRL 67

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             EM           + + V Y+T+I G C +G +D+ K LF +M +K I+P+VV Y+ L
Sbjct: 68  LGEMKRKG------LEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPNVVVYSCL 121

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I+GFC    W EA  +L  M ++G+QPDV T+  ++  LCK+G+  +A  L +LM  +G 
Sbjct: 122 INGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGE 181

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+T T++ L++G C  G +  A ++F +M   G +  V SY
Sbjct: 182 EPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSY 223



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 147/298 (49%), Gaps = 8/298 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  + G L K       L LF  +   G  P   TYN+LIN  CK G +  
Sbjct: 144 RGIQPDVYTYTCMIGGLCKDGRARKALDLFDLMTEKGEEPSTVTYNVLINGLCKEGCIGD 203

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTL 218
            F +   +L      + V++ +LI GLC   ++ EA  LF+ L   G   +P+VIT++T+
Sbjct: 204 AFKIFETMLEKGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFNTV 263

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I GLC+ G    A+ +++ M    G FG     N  T   +I    K G +DKA EL+ +
Sbjct: 264 IQGLCKEGRLDKAVEIYDTMIE-RGSFG-----NLFTCHILIGEYIKSGIIDKAMELWKR 317

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           +    + P   TY+ +I GFC  +  N A  L   M   G+ P +  +N +M  LCK   
Sbjct: 318 VHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISGLSPTLFDYNTLMASLCKESS 377

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++A RL + M      P+T +F+ ++DG    G ++ AKEL   M+ MG     ++Y
Sbjct: 378 LEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 85/255 (33%), Positives = 137/255 (53%), Gaps = 9/255 (3%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            KR+N   + PD+ +YN +IN  CK  R+     +L  +  S   P++  +  L+ GLC 
Sbjct: 1   MKRIN---ILPDIVSYNTIINGLCKEKRLEKAVDLLVEMEGSSCEPNSFTYCILMDGLCK 57

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E R+ EA  L  ++K  G + +V+ YSTLI+G C  G       LF+EM           
Sbjct: 58  EGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKG------I 111

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN V Y+ +I+G CK+G   +A  +   M ++ I PDV TY  +I G C      +A  
Sbjct: 112 SPNVVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALD 171

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   M ++G +P  VT+NV+++ LCK G + +A ++ E M+ +G      +++TL+ G C
Sbjct: 172 LFDLMTEKGEEPSTVTYNVLINGLCKEGCIGDAFKIFETMLEKGKRLEVVSYNTLIMGLC 231

Query: 370 LTGRVNHAKELFVSM 384
             G+++ A +LF S+
Sbjct: 232 NNGKLDEAMKLFSSL 246



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/194 (35%), Positives = 112/194 (57%), Gaps = 6/194 (3%)

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           +K     P++++Y+T+INGLC+      A++L  EM       G  C+PN+ TY  ++DG
Sbjct: 1   MKRINILPDIVSYNTIINGLCKEKRLEKAVDLLVEME------GSSCEPNSFTYCILMDG 54

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCKEG V++A  L  +MK K +  DVV Y++LI GFC     +    L  EM+++G+ P+
Sbjct: 55  LCKEGRVEEAMRLLGEMKRKGLEVDVVVYSTLISGFCSKGCLDRGKALFDEMLEKGISPN 114

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           VV ++ +++  CK G   EA+ +L  M  RG+ P+  T++ ++ G C  GR   A +LF 
Sbjct: 115 VVVYSCLINGFCKKGLWREATAVLHTMTERGIQPDVYTYTCMIGGLCKDGRARKALDLFD 174

Query: 383 SMESMGCKHTVFSY 396
            M   G + +  +Y
Sbjct: 175 LMTEKGEEPSTVTY 188



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 138/302 (45%), Gaps = 9/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYN 146
           +AF IF+ ML  +     + S+N L   L      D  + LF  L   G +  PD+ T+N
Sbjct: 203 DAFKIFETMLE-KGKRLEVVSYNTLIMGLCNNGKLDEAMKLFSSLLEDGNYVEPDVITFN 261

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +I   CK GR+     +   ++      +      LI        I +A  L+ ++   
Sbjct: 262 TVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCHILIGEYIKSGIIDKAMELWKRVHKL 321

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+  TYS +I+G C+      A  LF  M            P    Y T++  LCKE
Sbjct: 322 GLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKISG------LSPTLFDYNTLMASLCKE 375

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +++A+ LF +MK+ N  PD +++N +I G   A D + A  LL +M   G+ PD  T+
Sbjct: 376 SSLEQARRLFQEMKESNCEPDTISFNIMIDGTLKAGDIHSAKELLNDMQQMGLTPDAYTY 435

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +  ++ L K G+M+EA    + MI  G+ P+   + +L+ GF L   +     L   M  
Sbjct: 436 SSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVYDSLIKGFGLNDEIEEVINLLRQMAD 495

Query: 387 MG 388
           MG
Sbjct: 496 MG 497



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/304 (26%), Positives = 139/304 (45%), Gaps = 9/304 (2%)

Query: 88  NEAFCIFDYML-NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +F  +L +     P + +FN +   L K    D  + ++  +   G F +L+T +
Sbjct: 237 DEAMKLFSSLLEDGNYVEPDVITFNTVIQGLCKEGRLDKAVEIYDTMIERGSFGNLFTCH 296

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI  + K G +     +  R+ +    P +  ++ +I G C    +  A  LF+++K  
Sbjct: 297 ILIGEYIKSGIIDKAMELWKRVHKLGLVPSSTTYSVMIDGFCKMHMLNFAKGLFSRMKIS 356

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P +  Y+TL+  LC+      A  LF+EM   N      C+P+T+++  +IDG  K 
Sbjct: 357 GLSPTLFDYNTLMASLCKESSLEQARRLFQEMKESN------CEPDTISFNIMIDGTLKA 410

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  AKEL   M+   + PD  TY+S I+         EA      M+  G+ PD   +
Sbjct: 411 GDIHSAKELLNDMQQMGLTPDAYTYSSFINRLSKLGQMEEAKGAFDSMIASGITPDNHVY 470

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF--VSM 384
           + ++     N +++E   LL  M   GV  +    ++++   C +    H  EL    S 
Sbjct: 471 DSLIKGFGLNDEIEEVINLLRQMADMGVILDLEITNSILTFLCNSAEHLHVMELLPNFSS 530

Query: 385 ESMG 388
           ES G
Sbjct: 531 ESSG 534


>gi|413918448|gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 165/305 (54%), Gaps = 8/305 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+  +      P + SFN++   + +  +    L L +R+   G  PD  T NI
Sbjct: 63  QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNI 122

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  C++ +V+ G  VL R+ R     P+ V +TS+I G C   R+ +A +++  +   
Sbjct: 123 LVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQS 182

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PN +TY+ LING  +      A+ ++ ++   +      C P+ VT+ ++IDG C+ 
Sbjct: 183 GTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHS------CPPDVVTFNSLIDGYCRC 236

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A  ++++M   +I P+V T++ +IH  C  N   EA  LL E+ M   + P    
Sbjct: 237 GQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRELNMRADIVPQTFI 296

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N I+D LCK GK+DEA+ ++  M  +G +P+  T++ L+ G C+ GR+  A  LF  M 
Sbjct: 297 YNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMV 356

Query: 386 SMGCK 390
             GC+
Sbjct: 357 ETGCR 361



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/289 (30%), Positives = 156/289 (53%), Gaps = 10/289 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           NLL   +A  +  D V +LF+     GL+ PD++++N++I   C++G +     ++ R+ 
Sbjct: 51  NLLNTLIAHGRAQDAV-ALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMT 109

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHT 228
               +PD +    L+ GLC   ++ +   +  +L+  G C PNV+TY+++I+G C+ G  
Sbjct: 110 EFGCSPDTITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRM 169

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A +++ +M           +PNTVTY  +I+G  K   ++ A  ++ Q+   +  PDV
Sbjct: 170 KDAFSVYNDMLQSG------TRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDV 223

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT+NSLI G+C     ++A  + +EM    +QP+V TF++I+  LC   +  EA  LL  
Sbjct: 224 VTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLLRE 283

Query: 349 MILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +R  + P T  ++ ++D  C  G+V+ A  +   ME  GC    ++Y
Sbjct: 284 LNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTY 332



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 133/278 (47%), Gaps = 6/278 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    F+ + G        D   +L  + +  G   + Y YN L+N     GR      +
Sbjct: 9   PDAGFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRAQDAVAL 68

Query: 165 L-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
               I    ++PD  +F  +IKG+C    + +A  L  ++  FGC P+ IT + L++GLC
Sbjct: 69  FESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMTEFGCSPDTITQNILVDGLC 128

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R    +  +N   E+     + GV C PN VTYT++I G CK G +  A  ++  M    
Sbjct: 129 R----VKQVNKGHEVLRRLQRDGV-CMPNVVTYTSVISGYCKAGRMKDAFSVYNDMLQSG 183

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ VTYN LI+G+  A D   A  +  +++     PDVVTFN ++D  C+ G++D+A 
Sbjct: 184 TRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRCGQLDDAM 243

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           R+   M    + PN  TFS ++   C   R   A  L 
Sbjct: 244 RIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEALSLL 281



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 135/265 (50%), Gaps = 45/265 (16%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAA-LFTKLKAFGCK------------------- 209
           +S + PDA  F S + G C  + +++AAA L TK   FGC+                   
Sbjct: 4   QSGYVPDA-GFFSFVAGSCTNAGLLDAAANLLTKGSWFGCRIEWYAYNNLLNTLIAHGRA 62

Query: 210 -----------------PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
                            P+V +++ +I G+CR G+   AL L E M     +FG  C P+
Sbjct: 63  QDAVALFESWIQDGLYSPDVWSFNVVIKGVCRVGNLQKALELVERMT----EFG--CSPD 116

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           T+T   ++DGLC+   V+K  E+  ++ +D    P+VVTY S+I G+C A    +A  + 
Sbjct: 117 TITQNILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYTSVISGYCKAGRMKDAFSVY 176

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+  G +P+ VT+NV+++   K   M+ A R+   +IL    P+  TF++L+DG+C  
Sbjct: 177 NDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILHSCPPDVVTFNSLIDGYCRC 236

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G+++ A  +++ M     +  V+++
Sbjct: 237 GQLDDAMRIWMEMGQHHIQPNVYTF 261



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 32/290 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYN 146
            +A  + + M     SP  +T  N+L   L + K  +    + +RL   G+  P++ TY 
Sbjct: 99  QKALELVERMTEFGCSPDTITQ-NILVDGLCRVKQVNKGHEVLRRLQRDGVCMPNVVTYT 157

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +I+ +CK GR+   F V   +L+S   P+ V +  LI G      +  A  ++ +L   
Sbjct: 158 SVISGYCKAGRMKDAFSVYNDMLQSGTRPNTVTYNVLINGYGKALDMESAVRMYWQLILH 217

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVVCK----------- 250
            C P+V+T+++LI+G CR G    A+ ++ EM   + +     F ++             
Sbjct: 218 SCPPDVVTFNSLIDGYCRCGQLDDAMRIWMEMGQHHIQPNVYTFSIIIHSLCTQNRSAEA 277

Query: 251 --------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                         P T  Y  IID LCK G VD+A  +   M++K  +PD  TY  LI 
Sbjct: 278 LSLLRELNMRADIVPQTFIYNPIIDILCKGGKVDEANLIVTDMEEKGCHPDKYTYTILII 337

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           G C      EA  L  +M++ G +PD +T N  +  + K G  +E  +++
Sbjct: 338 GHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVLKAGMPNEVHQIM 387


>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
 gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
          Length = 475

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 157/290 (54%), Gaps = 8/290 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           S+N L   L K K      ++F  + S   + PD+ +Y+ILI+ FCK+  +     +  +
Sbjct: 123 SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQ 182

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P+   + + + GL  + RI +A  ++ ++ + GC P+VITYSTLI+G      
Sbjct: 183 MIDLNCVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARK 242

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LFE M +        C+PN VTY  ++ GLCKE   D+A ELF +M ++  +PD
Sbjct: 243 HDQAHELFEAMISRG------CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPD 296

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            VTY +L++GFC      +A  +  EM+ +G  PDVV +N ++    + GK  EA +L +
Sbjct: 297 KVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQ 356

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES-MGCKHTVFSY 396
           +M+ R   P+T + + ++DG     R++ A E+F  ME   GC   + +Y
Sbjct: 357 VMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTY 406



 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/283 (33%), Positives = 156/283 (55%), Gaps = 9/283 (3%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K    D+ LSL + +   G  PD+ T+++LIN  CK  ++      L  + R+  T  
Sbjct: 59  LCKAGRVDSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRA 118

Query: 177 AVAFT--SLIKGLCAESRIMEAAALF-TKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +  F+  SL+  LC   ++ +A A+F T +      P+V++YS LI+G C+      A  
Sbjct: 119 SSCFSYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEK 178

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L+++M + N      C PN  TY   ++GL ++G +  A+ ++ +M     +PDV+TY++
Sbjct: 179 LYKQMIDLN------CVPNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYST 232

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LIHGF  A   ++A+ L   M+ +G +P+ VT+N ++  LCK  K DEA  L   M+ RG
Sbjct: 233 LIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG 292

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +P+  T++TL+ GFC  G++  A E+F  M S G    V +Y
Sbjct: 293 CDPDKVTYTTLLYGFCNVGKIEQAVEVFDEMVSKGHDPDVVAY 335



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 161/301 (53%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF IF  M++ R   P + S+++L     K         L+K++      P++ TYN 
Sbjct: 138 HQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNA 197

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +N   + GR++    V   ++ +  +PD + +++LI G     +  +A  LF  + + G
Sbjct: 198 FLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRG 257

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PN +TY+ L++GLC+      A  LF +M          C P+ VTYTT++ G C  G
Sbjct: 258 CRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERG------CDPDKVTYTTLLYGFCNVG 311

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A E+F +M  K  +PDVV YN L+ GF  A    EA  L   M+ +  +PD V+ N
Sbjct: 312 KIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHN 371

Query: 328 VIMDELCKNGKMDEASRLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +++D L K  ++D+A  + E M    G +P+  T+++L+ G C   R++ A ++F  ++ 
Sbjct: 372 IMIDGLSKAKRLDDAVEVFERMEQDHGCSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 431

Query: 387 M 387
           +
Sbjct: 432 L 432



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 41/186 (22%)

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV---TYNSLIHGFCYANDWNEAN 308
           N V +T  + GLCK G +++A E    M++   +       T +S+I   C A   + A 
Sbjct: 10  NNVAWTAFLGGLCKSGKIEQAFEACRTMQESLSSSQPPSSGTCHSVIQELCKAGRVDSAL 69

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE--------------------- 347
            LL  M+ +G  PD+ T +++++ELCK  K+ EA   L+                     
Sbjct: 70  SLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCFSYNSLLN 129

Query: 348 -----------------LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
                            ++  R V P+  ++S L+DGFC    +  A++L+  M  + C 
Sbjct: 130 SLCKAKKVHQAFAIFSTMVSERSVVPDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCV 189

Query: 391 HTVFSY 396
             V +Y
Sbjct: 190 PNVTTY 195



 Score = 62.0 bits (149), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 67/142 (47%), Gaps = 4/142 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +FD M++ +   P + ++N L     +         LF+ + S    PD  ++NI
Sbjct: 314 EQAVEVFDEMVS-KGHDPDVVAYNCLLKGFFRAGKPGEARQLFQVMVSRECKPDTVSHNI 372

Query: 148 LINCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +I+   K  R+     V  R+ +   C +PD V + SLI GLC E R+ EA  +F ++  
Sbjct: 373 MIDGLSKAKRLDDAVEVFERMEQDHGC-SPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDR 431

Query: 206 FGCKPNVITYSTLINGLCRTGH 227
               P+   ++ L+  +   GH
Sbjct: 432 LKLSPDPHAFNVLLEAMYAAGH 453



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-G 137
           +G   A  P EA  +F  M++ R   P   S N++   L+K K  D  + +F+R+    G
Sbjct: 340 KGFFRAGKPGEARQLFQVMVS-RECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHG 398

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
             PDL TYN LI   C   R+S    V   I R   +PD  AF  L++ + A
Sbjct: 399 CSPDLVTYNSLIFGLCGEQRLSEAMKVFKEIDRLKLSPDPHAFNVLLEAMYA 450


>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
 gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
          Length = 847

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 100/321 (31%), Positives = 162/321 (50%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K           +R+ + G  PD +TYN +I+ +CK   +     +
Sbjct: 182 PDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATEL 241

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   +   F PD V + SLI GLCAE  +  A  LF + +A   KP+++ Y++L+ GLCR
Sbjct: 242 LKDAIFKGFVPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCR 301

Query: 225 TGHTIVALNLFEEMA---------------NGNGKFGVVCK--------------PNTVT 255
            G  + AL +  EM                NG  K G +                P+  T
Sbjct: 302 QGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFT 361

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+IDG CK   +D A +L  +M    I PD +TYNS+++G C A    E N    EM+
Sbjct: 362 FNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNETFEEMI 421

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G +P+ +T+N++++  CK  +++EAS ++  M   G+ P+T +F+TL+ GFC  G ++
Sbjct: 422 LKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLD 481

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF  ++  G   T  ++
Sbjct: 482 GAYLLFQKLDEKGYSATADTF 502



 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 168/308 (54%), Gaps = 8/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD ML  R   P + +FN +   L +        +L  ++   G+  + +T NI 
Sbjct: 98  DARHLFDEMLR-RDVFPDVATFNNVLHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIW 156

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C+ GR+    V L   + +   PD V + +L++GLC +S++ EAA    ++   GC
Sbjct: 157 IRGLCEGGRLEEA-VALVESMDAYIAPDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGC 215

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+  TY+T+I+G C+      A  L ++        G V  P+ VTY ++I+GLC EG 
Sbjct: 216 IPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK----GFV--PDRVTYCSLINGLCAEGD 269

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A ELF + + K++ PD+V YNSL+ G C       A  ++ EM++ G  PD+ T+N+
Sbjct: 270 VERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNI 329

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK G + +A+ ++   I++G  P+  TF+T++DG+C   +++ A +L   M   G
Sbjct: 330 VINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYG 389

Query: 389 CKHTVFSY 396
                 +Y
Sbjct: 390 IAPDAITY 397



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 140/284 (49%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L +       L +   +   G  PD++TYNI+IN  CKMG +S   VV
Sbjct: 287 PDLVVYNSLVKGLCRQGLILHALQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVV 346

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +   +   + PD   F ++I G C   ++  A  L  ++  +G  P+ ITY++++NGLC+
Sbjct: 347 MNDAIVKGYLPDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCK 406

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G        FEEM          C+PN +TY  +I+  CK   +++A  + ++M    +
Sbjct: 407 AGKAKEVNETFEEMILKG------CRPNAITYNILIENFCKINQLEEASGVIVRMSQDGL 460

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +++N+LIHGFC   D + A  L  ++ ++G      TFN+++        M  A +
Sbjct: 461 VPDTISFNTLIHGFCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEK 520

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   MI +G  P+  T+  L+DG C    V+ A      M S G
Sbjct: 521 IFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKG 564



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L   L      +  L LF    +  L PDL  YN L+   C+ G + H   V
Sbjct: 252 PDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGLCRQGLILHALQV 311

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++     PD   +  +I GLC    I +AA +       G  P+V T++T+I+G C+
Sbjct: 312 MNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYCK 371

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L E M      +G+   P+ +TY ++++GLCK G   +  E F +M  K  
Sbjct: 372 RLKLDSALQLVERM----WMYGIA--PDAITYNSVLNGLCKAGKAKEVNETFEEMILKGC 425

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TYN LI  FC  N   EA+ +++ M   G+ PD ++FN ++   C+NG +D A  
Sbjct: 426 RPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYL 485

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + +  +G +    TF+ L+  +     +  A+++F  M S G K  +++Y
Sbjct: 486 LFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTY 537



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 111/222 (50%), Gaps = 7/222 (3%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P A A+ +++  L   +   +A  ++ ++ + G  P+  T++  I   C TG   VAL L
Sbjct: 8   PAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVALRL 67

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
              +          C    + Y T++ GL   G    A+ LF +M  +++ PDV T+N++
Sbjct: 68  LRSLPERG------CDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNV 121

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           +H  C   D  E+  LL +++ +G+  +  T N+ +  LC+ G+++EA  L+E M    +
Sbjct: 122 LHALCQKGDIMESGALLAKVLKRGMSVNKFTCNIWIRGLCEGGRLEEAVALVESMDAY-I 180

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+  T++TLM G C   +V  A +    M + GC    F+Y
Sbjct: 181 APDVVTYNTLMRGLCKDSKVQEAAQYLRRMMNQGCIPDDFTY 222



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 135/295 (45%), Gaps = 40/295 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR---VSHG 161
           P + +FN +     K    D+ L L +R+   G+ PD  TYN ++N  CK G+   V+  
Sbjct: 357 PDVFTFNTMIDGYCKRLKLDSALQLVERMWMYGIAPDAITYNSVLNGLCKAGKAKEVNET 416

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           F  +  IL+ C  P+A+ +  LI+  C  +++ EA+ +  ++   G  P+ I+++TLI+G
Sbjct: 417 FEEM--ILKGC-RPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHG 473

Query: 222 LCRTGHTIVALNLFEE-------------------------MANGNGKFGVVC----KPN 252
            CR G    A  LF++                         M      FG +     KP+
Sbjct: 474 FCRNGDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPD 533

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
             TY  ++DG CK   VD+A     +M  K   P + T+  +++     +  +EA  ++ 
Sbjct: 534 LYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIH 593

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
            M+  GV P+VV   +  D+     K   A ++L   +++  + +  T+  L +G
Sbjct: 594 IMVRMGVVPEVVDTILSTDK-----KEIAAPKILVEELMKKGHISYPTYEVLHEG 643



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 50/195 (25%), Positives = 82/195 (42%), Gaps = 23/195 (11%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN+L G  +   +      +F  + S G  PDLYTY +L++  CK   V   +V L  +
Sbjct: 501 TFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEM 560

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +   F P    F  ++  L    R+ EA A+   +   G  P V      ++ +  T   
Sbjct: 561 VSKGFVPSMATFGRVLNSLAMNHRVSEAVAIIHIMVRMGVVPEV------VDTILSTDKK 614

Query: 229 IVALN--LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            +A    L EE+     K G +  P   TY  + +G+       KA++  L       +P
Sbjct: 615 EIAAPKILVEELM----KKGHISYP---TYEVLHEGVRDNKLTRKARKWRLS------DP 661

Query: 287 DVVTYNSLIHGFCYA 301
           D +  N+  HG  Y+
Sbjct: 662 DCM--NTTTHGISYS 674



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 63/140 (45%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P    Y  I+D L    + D+A +++++M    + PD  T+   I  FC     + A 
Sbjct: 6   CPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVAL 65

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL  + ++G     + +  ++  L  +G   +A  L + M+ R V P+ +TF+ ++   
Sbjct: 66  RLLRSLPERGCDVKPLAYCTVVRGLYAHGHGYDARHLFDEMLRRDVFPDVATFNNVLHAL 125

Query: 369 CLTGRVNHAKELFVSMESMG 388
           C  G +  +  L   +   G
Sbjct: 126 CQKGDIMESGALLAKVLKRG 145



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%)

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P    +N IMD L      D+A ++   M+  GV P+  T +  +  FC+TGR + A
Sbjct: 5   GCPPAAPAYNAIMDALVNTAYHDQAHKVYVRMLSAGVAPDARTHTVRIKSFCITGRPHVA 64

Query: 378 KELFVSMESMGCKHTVFSY 396
             L  S+   GC     +Y
Sbjct: 65  LRLLRSLPERGCDVKPLAY 83


>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
          Length = 816

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 161/325 (49%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 45  LRPEEAHDLLDE-LQRRGTPVLDRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRA 103

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  YTY IL++C  +  R        G++LR+    DA+  + L+KG C   R
Sbjct: 104 QGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIASHLLKGFCEAKR 163

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +Y+ L+  LC  G +  A +L   MA G    G VC P
Sbjct: 164 TDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEG----GTVCSP 219

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y T+IDG  KEG V+KA +LF +M  + I PD+VTY+S++H  C A   ++A   L
Sbjct: 220 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFL 279

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++GV PD  T+N ++      G+  EA R+ + M  + + P+    +TLM   C  
Sbjct: 280 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKY 339

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 340 GKIKEARDVFDTMAMKGQNPDVFSY 364



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 173/348 (49%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP L +++ +   L K +  D   +  +++ + G+
Sbjct: 234 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 287

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD +TYN LI  +   G+      V   + R    PD VA  +L+  LC   +I EA  
Sbjct: 288 LPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARD 347

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGVV---- 248
           +F  +   G  P+V +Y+ ++NG    G  +   +LF+ M  G+G       F V+    
Sbjct: 348 VFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLML-GDGIAPDIYTFNVLIKAY 406

Query: 249 --------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KP+ VTY T+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 407 ANCGMLDKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDK 466

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             Y+ LI GFC      +A  L+ E+M+ G++ D+V F  I++ LCK G++ +A  + +L
Sbjct: 467 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDL 526

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  G++P+   ++ LMDG+CL G++  A  +F +M S G +  V  Y
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 574



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 159/317 (50%), Gaps = 13/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  D 
Sbjct: 89  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 148

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              + L+  FC+  R      ++L R       PD  ++  L+K LC + +  +A  L  
Sbjct: 149 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLR 208

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C P+V+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY+++
Sbjct: 209 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDLVTYSSV 262

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + PD  TYN+LI+G+     W EA  +  EM  Q +
Sbjct: 263 VHALCKARAMDKAEAFLRQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSI 322

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVV  N +M  LCK GK+ EA  + + M ++G NP+  +++ +++G+   G +    +
Sbjct: 323 LPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYTIMLNGYATKGCLVDMTD 382

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G    ++++
Sbjct: 383 LFDLMLGDGIAPDIYTF 399



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 145/309 (46%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y Y+ 
Sbjct: 413 DKAMIIFNEMRD-HGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHC 471

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F S+I  LC   R+M+A  +F      G
Sbjct: 472 LIQGFCTHGSLLKAKELISEIMNNGMRLDIVFFGSIINNLCKLGRVMDAQNIFDLTVNVG 531

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + Y+ L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 532 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNVVGYGTLVNGYCKIG 585

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  K I P  + YN +I G   A     A     EM + G+  +  T++
Sbjct: 586 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 645

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  +  T +T++ G   T RV  AK+LF S+   
Sbjct: 646 IVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS 705

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 706 GLVPCAVTY 714



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 161/350 (46%), Gaps = 23/350 (6%)

Query: 47  TTTAKLKESLRL--------TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
           ++T + KE++R+         + D  +L   +   CK    G I      EA  +FD M 
Sbjct: 302 SSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCK---YGKI-----KEARDVFDTM- 352

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            M+   P + S+ ++    A       +  LF  +   G+ PD+YT+N+LI  +   G +
Sbjct: 353 AMKGQNPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGML 412

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
               ++   +      P  V + ++I  LC   ++ +A   F ++   G  P+   Y  L
Sbjct: 413 DKAMIIFNEMRDHGVKPHVVTYMTVIAALCRIGKMDDAMEKFNQMIDQGVVPDKYAYHCL 472

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G C  G  + A  L  E+ N   +  +V       + +II+ LCK G V  A+ +F  
Sbjct: 473 IQGFCTHGSLLKAKELISEIMNNGMRLDIV------FFGSIINNLCKLGRVMDAQNIFDL 526

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
             +  ++PD V YN L+ G+C      +A  +   M+  G++P+VV +  +++  CK G+
Sbjct: 527 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGYCKIGR 586

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +DE   L   M+ +G+ P+T  ++ ++DG    GR   AK  F  M   G
Sbjct: 587 IDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 636



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/317 (27%), Positives = 150/317 (47%), Gaps = 12/317 (3%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 126 AHRPELALAFFGQLLRTGLRVDAIIASHLLKG-FCEAKRTDEALDILLHRTPELGCVPDV 184

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFT---PDAVAFTSLIKGLCAESRIMEAAAL 199
           ++YNIL+   C  G+      +L R++    T   PD VA+ ++I G   E  + +A  L
Sbjct: 185 FSYNILLKSLCNQGKSGQADDLL-RMMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDL 243

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++   G  P+++TYS++++ LC+      A     +M N     GV+  P+  TY  +
Sbjct: 244 FKEMVQRGIPPDLVTYSSVVHALCKARAMDKAEAFLRQMVNK----GVL--PDNWTYNNL 297

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G    G   +A  +F +M+ ++I PDVV  N+L+   C      EA  +   M  +G 
Sbjct: 298 IYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYGKIKEARDVFDTMAMKGQ 357

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDV ++ ++++     G + + + L +LM+  G+ P+  TF+ L+  +   G ++ A  
Sbjct: 358 NPDVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMI 417

Query: 380 LFVSMESMGCKHTVFSY 396
           +F  M   G K  V +Y
Sbjct: 418 IFNEMRDHGVKPHVVTY 434



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL PD   YN+L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 522 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGY 581

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I Y+ +I+GL   G T+ A   F EM       G+
Sbjct: 582 CKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES----GI 637

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               N  TY+ ++ GL K    D+A  LF +++  N+  D++T N++I G        EA
Sbjct: 638 AM--NKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 695

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +   G+ P  VT+++++  L K G ++EA  +   M   G  P++
Sbjct: 696 KDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDS 746



 Score =  100 bits (248), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 127/284 (44%), Gaps = 7/284 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  IFD  +N+   P  +  +N+L          +  L +F  + S G+ P++  Y  L
Sbjct: 519 DAQNIFDLTVNVGLHPDAVV-YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 577

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N +CK+GR+  G  +   +L+    P  + +  +I GL    R + A   F ++   G 
Sbjct: 578 VNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGI 637

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N  TYS ++ GL +      A+ LF+E+   N K  ++      T  T+I G+ +   
Sbjct: 638 AMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDII------TLNTMIAGMFQTRR 691

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++AK+LF  +    + P  VTY+ +I          EA  +   M + G +PD    N 
Sbjct: 692 VEEAKDLFASISRSGLVPCAVTYSIMITNLLKEGLVEEAEDMFSSMQNAGCEPDSRLLNH 751

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           ++ EL K  ++  A   L  +  R  +    T   L+D F   G
Sbjct: 752 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 795


>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 790

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 109/359 (30%), Positives = 171/359 (47%), Gaps = 58/359 (16%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
           F+ + C+   + DIT ++                    L  +N L   LA+    D +  
Sbjct: 139 FVSDICRKMSKDDITKLS--------------------LKCYNELLTLLARFGLVDEMNQ 178

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD------------ 176
           L+  +    +  D+YT+N++IN +CKMG V      + +++++  +PD            
Sbjct: 179 LYTEMLEEFVSMDIYTFNLMINVYCKMGFVKEAKQFMCKMIQAGLSPDYFTSTSFILGYC 238

Query: 177 -------------------AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
                               V++  LI GLC   RI EA +LF ++K   C PNV TY+ 
Sbjct: 239 RSKDVDSAFRVFEEMPNRNEVSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTA 298

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI GLCR  +   A+ L +EM   N        P+ +TY ++I G C+ G +D A  L  
Sbjct: 299 LIKGLCRK-NVHKAMGLLDEMLERN------LVPDLITYNSLIAGQCRAGHLDSAYRLLS 351

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            MK++ + PD  TY   I   C +N   EA  L   + ++GV  +V+ ++V++D  CK G
Sbjct: 352 LMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVG 411

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+DEA  L E M+ +  +PN  TF+ L+ G C  G +  A  LF  M  MG K TV+++
Sbjct: 412 KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTF 470



 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 156/309 (50%), Gaps = 12/309 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F+ M N         S+N L   L +    D  +SLF R+     +P++YTY  
Sbjct: 244 DSAFRVFEEMPNRNE-----VSYNQLIHGLCEAGRIDEAVSLFVRMKDDCCYPNVYTYTA 298

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C+   V     +L  +L     PD + + SLI G C    +  A  L + +K  G
Sbjct: 299 LIKGLCR-KNVHKAMGLLDEMLERNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERG 357

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY   I+ LC++     A  LF+ +       GV    N + Y+ +IDG CK G
Sbjct: 358 LVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEE----GV--SANVIMYSVLIDGYCKVG 411

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A  LF +M  KN +P+  T+N+LIHG C A +  EA  L  +M+  G++P V TFN
Sbjct: 412 KVDEAGCLFEKMLSKNCSPNAYTFNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFN 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  + K G  D+A + L+ M+  G  P   T++  ++ +C  G+V  A+++ V M+  
Sbjct: 472 ILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEE 531

Query: 388 GCKHTVFSY 396
           G     F+Y
Sbjct: 532 GVPPDDFTY 540



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/311 (31%), Positives = 144/311 (46%), Gaps = 11/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M +    P   T   L+ G   K  H    + L   +    L PDL TYN 
Sbjct: 275 DEAVSLFVRMKDDCCYPNVYTYTALIKGLCRKNVH--KAMGLLDEMLERNLVPDLITYNS 332

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C+ G +   + +L  +      PD   +   I  LC  +R+ EA  LF  L   G
Sbjct: 333 LIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGCFIDFLCKSNRVEEARRLFDSLTEEG 392

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              NVI YS LI+G C+ G    A  LFE+M + N      C PN  T+  +I GLC  G
Sbjct: 393 VSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKN------CSPNAYTFNALIHGLCSAG 446

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A  LF QM    + P V T+N LI       D+++A+  L +MM  G +P   T+N
Sbjct: 447 NLKEALSLFDQMVKMGLKPTVYTFNILIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYN 506

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             ++  C  GK+ EA  ++  M   GV P+  T+++L+  +   G    A ++  SM   
Sbjct: 507 AFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFDVLKSMFDA 566

Query: 388 GCK---HTVFS 395
            C+   HT  S
Sbjct: 567 DCEPSHHTFLS 577



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D ML  R   P L ++N L     +  H D+   L   +   GL PD  TY  
Sbjct: 309 HKAMGLLDEMLE-RNLVPDLITYNSLIAGQCRAGHLDSAYRLLSLMKERGLVPDQRTYGC 367

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+  CK  RV     +   +     + + + ++ LI G C   ++ EA  LF K+ +  
Sbjct: 368 FIDFLCKSNRVEEARRLFDSLTEEGVSANVIMYSVLIDGYCKVGKVDEAGCLFEKMLSKN 427

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN  T++ LI+GLC  G+   AL+LF++M     K G+  KP   T+  +I  + K+G
Sbjct: 428 CSPNAYTFNALIHGLCSAGNLKEALSLFDQMV----KMGL--KPTVYTFNILIGRMLKQG 481

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A +   +M      P   TYN+ I  +C A    EA  ++++M ++GV PD  T+ 
Sbjct: 482 DFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYT 541

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++    K G    A  +L+ M      P+  TF +L+
Sbjct: 542 SLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLI 579



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/373 (25%), Positives = 149/373 (39%), Gaps = 71/373 (19%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA C+F+ ML+   SP   T FN L   L    +    LSLF ++   GL P +YT+NI
Sbjct: 414 DEAGCLFEKMLSKNCSPNAYT-FNALIHGLCSAGNLKEALSLFDQMVKMGLKPTVYTFNI 472

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI    K G        L +++ S   P A  + + I+  C+  ++ EA  +  ++K  G
Sbjct: 473 LIGRMLKQGDFDDAHKCLQKMMSSGEKPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEG 532

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY++LI    + G T  A ++ + M      F   C+P+  T+ ++I  L  + 
Sbjct: 533 VPPDDFTYTSLIKAYGKLGLTYSAFDVLKSM------FDADCEPSHHTFLSLIKQLFDKR 586

Query: 268 FV-----------------------------DKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           +V                             D   ELF +M+     PD   Y  LI G 
Sbjct: 587 YVVEKSGETGVESVSNFGDVPGSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGI 646

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   +   A  LL +M  +G+ P  + FN ++   CK  K  EA+ ++E MI  G +P  
Sbjct: 647 CKVENLGIALKLLDQMQKEGISPSEMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQL 706

Query: 359 S-----------------------------------TFSTLMDGFCLTGRVNHAKELFVS 383
                                                +  L+DG    G V    +LF  
Sbjct: 707 EHCKTLICGLYEEGETERGNSVFKKLRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEE 766

Query: 384 MESMGCKHTVFSY 396
           ME  GC  +  +Y
Sbjct: 767 MEKNGCNFSPRTY 779



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 140/350 (40%), Gaps = 71/350 (20%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  +A    EA  +FD M+ M   P   T FN+L G + K   +D      +++ S+G 
Sbjct: 440 HGLCSAGNLKEALSLFDQMVKMGLKPTVYT-FNILIGRMLKQGDFDDAHKCLQKMMSSGE 498

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P   TYN  I  +C  G+V     ++ ++      PD   +TSLIK          A  
Sbjct: 499 KPVARTYNAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYTSLIKAYGKLGLTYSAFD 558

Query: 199 LFTKLKAFGCKPNVITYSTLINGLC-------RTGHTIV--------------------- 230
           +   +    C+P+  T+ +LI  L        ++G T V                     
Sbjct: 559 VLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVSNFGDVPGSNMWKMMEFD 618

Query: 231 -ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
             + LFEEM     K G  C P++  Y  +I G+CK   +  A +L  QM+ + I+P  +
Sbjct: 619 IVIELFEEME----KHG--CTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPSEM 672

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQP---------------------------- 321
            +N++I   C    + EA  ++ +M+  G  P                            
Sbjct: 673 VFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFKKL 732

Query: 322 -------DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
                  D + + +++D + K G ++E S+L E M   G N +  T+S L
Sbjct: 733 RGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSIL 782



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 9/184 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           + K   +D V+ LF+ +   G  PD   Y  LI+  CK+  +     +L ++ +   +P 
Sbjct: 611 MWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGICKVENLGIALKLLDQMQKEGISPS 670

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            + F ++I   C   +  EAA +   +   G  P +    TLI GL   G T    ++F+
Sbjct: 671 EMVFNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLICGLYEEGETERGNSVFK 730

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL-- 294
           ++       G     + + +  +IDG+ K+G V++  +LF +M+    N    TY+ L  
Sbjct: 731 KLR------GCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGCNFSPRTYSILTQ 784

Query: 295 -IHG 297
            +HG
Sbjct: 785 KLHG 788



 Score = 46.6 bits (109), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 3/134 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D M     SP  +  FN +  C  K + Y    ++ + +  +G  P L     LI
Sbjct: 655 ALKLLDQMQKEGISPSEMV-FNAVISCCCKLQKYGEAANIVEDMICSGHSPQLEHCKTLI 713

Query: 150 NCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
               + G    G  V  + LR C +  D +A+  LI G+  +  + E + LF +++  GC
Sbjct: 714 CGLYEEGETERGNSVFKK-LRGCGYNDDEIAWKILIDGMLKQGLVEEFSQLFEEMEKNGC 772

Query: 209 KPNVITYSTLINGL 222
             +  TYS L   L
Sbjct: 773 NFSPRTYSILTQKL 786


>gi|125535814|gb|EAY82302.1| hypothetical protein OsI_37513 [Oryza sativa Indica Group]
          Length = 578

 Score =  175 bits (444), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 106/328 (32%), Positives = 164/328 (50%), Gaps = 32/328 (9%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGR 157
           R   P + +FN +   L +         + K + + GL P + TYN LI+ +CK    G 
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           + H  ++L  ++ +  +P AV F  LI G C  S    A  +F ++K  G   +V+TY++
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 218 LINGLCRTGHTIVALNLFEEMAN-----GNGKFGVVCK---------------------- 250
           LI+GLC  G     + L EEM +         FG V K                      
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERN 364

Query: 251 --PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+ V YT +IDG  + G ++ A  +   M  K I+P+V TYN LI GF  + DW  A+
Sbjct: 365 VEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSAS 424

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM ++G++ DVVT+NV++  LC  G++ +A +LL+ M   G+ PN  T++T++ GF
Sbjct: 425 GLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGF 484

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G +  A E+   ME    +  V +Y
Sbjct: 485 CDKGNIKSAYEIRTRMEKCRKRANVVTY 512



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 141/295 (47%), Gaps = 44/295 (14%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P   + N L+       RV          LR   +PD   F ++I GLC   ++ +A  +
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTG--------------------------------- 226
              +KA+G  P+V TY++LI+G C+ G                                 
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 227 -----HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
                +T  A+ +FEEM     + G+    + VTY ++I GLC EG V++  +L  +M+D
Sbjct: 274 YCKNSNTAAAVRVFEEMK----QQGIAA--SVVTYNSLISGLCSEGKVEEGVKLMEEMED 327

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             ++P+ +T+  ++ GFC      +AN  +  M ++ V+PDVV + +++D   + GKM++
Sbjct: 328 LGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYTILIDGYRRLGKMED 387

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  + E M  +G++PN +T++ L+ GF  +G    A  L   M+  G +  V +Y
Sbjct: 388 AMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/266 (29%), Positives = 129/266 (48%), Gaps = 6/266 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L      +  + L + +   GL P+  T+  ++  FCK G ++     + 
Sbjct: 299 VVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      PD V +T LI G     ++ +A A+   +   G  PNV TY+ LI G  R+G
Sbjct: 359 GMTERNVEPDVVIYTILIDGYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L +EM           + + VTY  +I  LC +G V KA +L  +M +  + P
Sbjct: 419 DWRSASGLLDEMKEKG------IEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEP 472

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + +TYN++I GFC   +   A  +   M     + +VVT+NV +   C+ GKMDEA+ LL
Sbjct: 473 NHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLL 532

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTG 372
             M+ + + PN  T+ T+ +G    G
Sbjct: 533 NEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+T +   ++ GL     VD A++ F     + ++PD+ T+N++I G C      +A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKN---GKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +  ++   G+ P V T+N ++D  CK    G M     LL+ M+  G++P   TF  L++
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C       A  +F  M+  G   +V +Y
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTY 302



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T++N L    +++  + +   L   +   G+  D+ TYN+LI   C  G V     +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ + + ++I+G C +  I  A  + T+++    + NV+TY+  I   C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            G    A +L  EM +          PN +TY TI +G+ ++G+
Sbjct: 522 IGKMDEANDLLNEMLDK------CLVPNGITYETIKEGMMEKGY 559


>gi|449438705|ref|XP_004137128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 149/265 (56%), Gaps = 6/265 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++++N L   L   +  D    + K +   G+ PD  TYNILIN +C+       F++
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L S   P    +TSL+  L  ++R+ EA  LF K+ + G  P+VI ++ LI+G C 
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCS 478

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  L ++M        +   P+ VT+ TI+ G C+EG V++A+ELF +MK + I
Sbjct: 479 NSNVKGAFELLKDMDR------MKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +++N+LI G+    D  +A  +  EM+D G  P V+T+N ++  LCKN + D A  
Sbjct: 533 KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 345 LLELMILRGVNPNTSTFSTLMDGFC 369
           LL+ M+ +G+ P+ +T+ TL++G  
Sbjct: 593 LLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF  F Y +  +   P + + N L     K    +    L+  +    +   +YT+NI
Sbjct: 168 DEAFECF-YTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNI 226

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK G++      +G +  S   P+ V + +++ G C+  R+  A A+ T +K   
Sbjct: 227 MINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQK 286

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+  TY +LI+G+C+ G    A  +FEEM           +P+ V Y T+IDG C +G
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKG 340

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A     +M  K I+P + TYNSLIH        +EA C++ E+ ++G+ PD +T+N
Sbjct: 341 NLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN 400

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  C+     +A  L + M+  G+ P   T+++L+       R+  A +LF  + S 
Sbjct: 401 ILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 388 G 388
           G
Sbjct: 461 G 461



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 164/342 (47%), Gaps = 42/342 (12%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ ++  M  +R      T FN++   L K             + ++G+ P++ TYN ++
Sbjct: 205 AWVLYAEMFRLRIKSSVYT-FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +C  GRV     +L  + R    PD+  + SLI G+C + R+ EA+ +F ++   G +
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ + Y+TLI+G C  G+  +A    +EM     K G+   P   TY ++I  L  E   
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEML----KKGI--SPTMSTYNSLIHALFMEQRT 377

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCY----------------------------- 300
           D+A+ +  ++++K I+PD +TYN LI+G+C                              
Sbjct: 378 DEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSL 437

Query: 301 ------ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
                  N   EA+ L  ++  +GV PDV+ FN ++D  C N  +  A  LL+ M    V
Sbjct: 438 LHVLSKKNRMKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKV 497

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+  TF+T+M G C  G+V  A+ELF  M+  G K    S+
Sbjct: 498 PPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF 539



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 98/308 (31%), Positives = 151/308 (49%), Gaps = 9/308 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I   M   +  P   T  +L+ G + K    +    +F+ +   GL P    YN LI
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISG-MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FC  G +         +L+   +P    + SLI  L  E R  EA  +  +++  G  
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           P+ ITY+ LING CR  +   A  L +EM A+G        KP   TYT+++  L K+  
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASG-------IKPTKKTYTSLLHVLSKKNR 446

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A +LF ++  + + PDV+ +N+LI G C  ++   A  LL +M    V PD VTFN 
Sbjct: 447 MKEADDLFKKITSEGVLPDVIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNT 506

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           IM   C+ GK++EA  L + M  RG+ P+  +F+TL+ G+   G +  A  +   M   G
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTG 566

Query: 389 CKHTVFSY 396
              TV +Y
Sbjct: 567 FNPTVLTY 574



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F+ L          D     F  +   G+ P + T N L++ F K+ R    +V+   + 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R         F  +I  LC E ++ +A      ++  G KPN++TY+T+++G C +G   
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +   M           +P++ TY ++I G+CK+G +++A ++F +M  K + P  V
Sbjct: 274 AADAILTTMKRQK------IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YN+LI GFC   + + A+    EM+ +G+ P + T+N ++  L    + DEA  +++ +
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +G++P+  T++ L++G+C       A  L   M + G K T  +Y
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY 434



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           ++ F  LIK  C  +R  EA   F  +K  G  P + T ++L++   +   T  A  L+ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM      F +  K +  T+  +I+ LCKEG + KAK+    M+   + P++VTYN+++H
Sbjct: 211 EM------FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVH 264

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+C +     A+ +L  M  Q ++PD  T+  ++  +CK G+++EAS++ E M+ +G+ P
Sbjct: 265 GYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRP 324

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++TL+DGFC  G ++ A      M   G   T+ +Y
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTY 364



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 12/309 (3%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL---FPDLYTYNI 147
            C+   ++   PSP P  + +LL   L      +++  +F+ L ++     F     ++ 
Sbjct: 100 LCLAIVIVARLPSPKP--ALHLLKQALGGGT-TNSIREIFEFLAASRDRLGFKSSIVFDY 156

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C M R    F     +      P      SL+      +R   A  L+ ++    
Sbjct: 157 LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR 216

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K +V T++ +IN LC+ G    A +    M       GV  KPN VTY TI+ G C  G
Sbjct: 217 IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS----GV--KPNIVTYNTIVHGYCSSG 270

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A  +   MK + I PD  TY SLI G C      EA+ +  EM+ +G++P  V +N
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  C  G +D AS   + M+ +G++P  ST+++L+    +  R + A+ +   ++  
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 391 GISPDAITY 399



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 34/216 (15%)

Query: 89  EAFCIFDYML--NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +AF + D ML   ++P+    TS   L   L+K         LFK++ S G+ PD+  +N
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTS---LLHVLSKKNRMKEADDLFKKITSEGVLPDVIMFN 470

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI+  C    V   F +L  + R    PD V F ++++G C E ++ EA  LF ++K  
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVCK------- 250
           G KP+ I+++TLI+G  R G    A  +  EM +          N     +CK       
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLA 590

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAK 273
                        P+  TY T+I+G+ K    D+ K
Sbjct: 591 EELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626


>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
 gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 105/316 (33%), Positives = 162/316 (51%), Gaps = 17/316 (5%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-TKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           A   + YM  M      + S N+L   L K +   D    +F+ +   G  PD YTY  L
Sbjct: 139 AMSFYKYMREM-GVRQSVVSLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTL 197

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK+G+      +   +     +P  V ++ L+ GLC    + EA  LF K+K    
Sbjct: 198 INGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAI 257

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PNV TYS+L++GLC+ G ++ A+ L E M     K      PN VTY+T+I+GLCKEG 
Sbjct: 258 EPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKRHK------PNMVTYSTLINGLCKEGK 311

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-- 326
           + +A E   +MK + + PD   Y  +I+GFC    + EA   L EM+   + P+ VT+  
Sbjct: 312 LAEAVETLDRMKLQGLKPDAGLYGKIINGFCNIRKFQEAATYLDEMVLGQISPNRVTWSL 371

Query: 327 -----NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
                N+++  LC NG ++ + +L   M  RG++ +  TF +L+  FC  G ++ A  +F
Sbjct: 372 HVKLNNMVVQGLCTNGNLNRSFQLYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIF 431

Query: 382 VSMESMGC--KHTVFS 395
             M   GC   H ++S
Sbjct: 432 DEMVLDGCVPDHGIWS 447



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 106/361 (29%), Positives = 176/361 (48%), Gaps = 28/361 (7%)

Query: 38  ISKNE--PSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFD 95
           +S NE  P++       +E  R+T       E+     C+  G+  +    P +A  +F 
Sbjct: 61  VSANEFRPAEEMLNRMKEEKCRIT-------EEIFLSICRGYGRVHM----PLDAIRVFH 109

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK- 154
            M N     P   S+  +F  L +       +S +K +   G+   + + N+LI   CK 
Sbjct: 110 KM-NDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKN 168

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +   F +   + +    PD+  + +LI GLC   +  EA  LF ++   GC P+V+T
Sbjct: 169 SGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVT 228

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           YS L++GLC+ G+   A+ LF++M           +PN  TY++++DGLCK G   +A E
Sbjct: 229 YSCLMHGLCQAGNVDEAMGLFDKMKKK------AIEPNVFTYSSLMDGLCKNGGSLEAME 282

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M  K   P++VTY++LI+G C      EA   L  M  QG++PD   +  I++  C
Sbjct: 283 LLEMMVRKRHKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNHAKELFVSMESM 387
              K  EA+  L+ M+L  ++PN  T+S        ++ G C  G +N + +L++ M + 
Sbjct: 343 NIRKFQEAATYLDEMVLGQISPNRVTWSLHVKLNNMVVQGLCTNGNLNRSFQLYIGMRTR 402

Query: 388 G 388
           G
Sbjct: 403 G 403



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 124/217 (57%), Gaps = 7/217 (3%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VALN 233
           P   ++ S+   L  E+++  A + +  ++  G + +V++ + LI  LC+   TI  A  
Sbjct: 118 PTDKSYISVFAILVEENQLKVAMSFYKYMREMGVRQSVVSLNVLIKALCKNSGTIDAAFE 177

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +F EM          C P++ TY T+I+GLCK G   +AKELF +M  K  +P VVTY+ 
Sbjct: 178 IFREMPKRG------CDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPSVVTYSC 231

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+HG C A + +EA  L  +M  + ++P+V T++ +MD LCKNG   EA  LLE+M+ + 
Sbjct: 232 LMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGGSLEAMELLEMMVRKR 291

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             PN  T+STL++G C  G++  A E    M+  G K
Sbjct: 292 HKPNMVTYSTLINGLCKEGKLAEAVETLDRMKLQGLK 328



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 123/263 (46%), Gaps = 7/263 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G   D  T+ ++I+             +L R+           F S+ +G       +
Sbjct: 43  SNGFRHDHTTFGVMISKLVSANEFRPAEEMLNRMKEEKCRITEEIFLSICRGYGRVHMPL 102

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           +A  +F K+  FGCKP   +Y ++   L       VA++ ++ M     + GV  + + V
Sbjct: 103 DAIRVFHKMNDFGCKPTDKSYISVFAILVEENQLKVAMSFYKYMR----EMGV--RQSVV 156

Query: 255 TYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           +   +I  LCK  G +D A E+F +M  +  +PD  TY +LI+G C      EA  L  E
Sbjct: 157 SLNVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKE 216

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  +G  P VVT++ +M  LC+ G +DEA  L + M  + + PN  T+S+LMDG C  G 
Sbjct: 217 MDTKGCSPSVVTYSCLMHGLCQAGNVDEAMGLFDKMKKKAIEPNVFTYSSLMDGLCKNGG 276

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A EL   M     K  + +Y
Sbjct: 277 SLEAMELLEMMVRKRHKPNMVTY 299


>gi|255660858|gb|ACU25598.1| pentatricopeptide repeat-containing protein [Duranta serratifolia]
          Length = 418

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 147/274 (53%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NI+++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWDFYKEILECGYPASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+ID  CK G VD A E++ QM  +  +PD++TYN+LI+
Sbjct: 231 EMLDR----GLV--PNGVTFTTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +   L+ EM   G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR + A+++F  M S+G K
Sbjct: 345 DNVAYTALVSGLCQEGRADDAEKMFREMLSVGLK 378



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 146/285 (51%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN++     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ EA  LF ++   G  PN +T++TLI+  C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ ++++M +          P+ +TY T+I GLCK+G + + + L  +M    
Sbjct: 253 KNGMVDSAMEIYKQMLSQG------FSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+ D+A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   M+  G+ P+  T++ +++ FC  G V  A  L   M+  G
Sbjct: 367 KMFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDG 411



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    D    LF  +   GL P+  T+  LI+  CK G V     +
Sbjct: 204 PDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTFTTLIDVHCKNGMVDSAMEI 263

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L   F+PD + + +LI GLC +  + +  AL  ++   G KP+ ITY+TLI+G C+
Sbjct: 264 YKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSMNGLKPDKITYTTLIDGCCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    + M   +       + + V YT ++ GLC+EG  D A+++F +M    +
Sbjct: 324 EGDLETAFEFRKRMIKES------IRLDNVAYTALVSGLCQEGRADDAEKMFREMLSVGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            PD  TY  +I+ FC   D   A+ LL EM   G  P VVT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ +++  C+ G    A ++F+ +     K+G+  +P+ V++ T+++G  + 
Sbjct: 131 GYPASLYFFNIVMHRFCKEGEMRRAQSVFDAIT----KWGL--RPSVVSFNTLMNGYIRL 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M    + PDV TY+ LI+G C  +  +EAN L  EM+D+G+ P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKVDEANELFNEMLDRGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG +D A  + + M+ +G +P+  T++TL+ G C  G +   + L   M  
Sbjct: 245 TTLIDVHCKNGMVDSAMEIYKQMLSQGFSPDLITYNTLIYGLCKKGDLKQVRALIDEMSM 304

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 305 NGLKPDKITY 314



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           TY T+I+ LC     + A +L   + +  GK      F  +       + +   ++ ++ 
Sbjct: 15  TYCTMIHFLCTHQMLLEAKSLIRIVVSRKGKDSASAVFAAILGTKGTQRSDIYVFSGLMT 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GFV  A + F   K         T   ++        +        E+++ G   
Sbjct: 75  AYLESGFVHDAIQCFRLTKKHKFWVPFDTCRKVLEHLMKLKYFKLVWDFYKEILECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +   G+ P+  +F+TLM+G+   G ++    L 
Sbjct: 135 SLYFFNIVMHRFCKEGEMRRAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHASGVQPDVYTY 209



 Score = 42.0 bits (97), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 1/111 (0%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +T   L+ GC  K    +T     KR+    +  D   Y  L++  C+ GR      
Sbjct: 309 PDKITYTTLIDGC-CKEGDLETAFEFRKRMIKESIRLDNVAYTALVSGLCQEGRADDAEK 367

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           +   +L     PD   +T +I   C +  +  A+ L  +++  G  P V+T
Sbjct: 368 MFREMLSVGLKPDNGTYTMIINEFCKKGDVRTASRLLKEMQRDGHVPCVVT 418


>gi|224127568|ref|XP_002329310.1| predicted protein [Populus trichocarpa]
 gi|222870764|gb|EEF07895.1| predicted protein [Populus trichocarpa]
          Length = 593

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 160/301 (53%), Gaps = 9/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F++M  +    P L +  +L   LAK +  DTV  ++K++   G+  +++ YN+
Sbjct: 153 HEAIQVFEHM-RVNGFRPHLHACTVLLNSLAKDRLTDTVWKIYKKMVKLGVVANIHVYNV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G V     VL  +   C  PD   + +LI   C +    EA ++  +++  G
Sbjct: 212 LLHACCKSGDVEKAEKVLSEMELKCVFPDLFTYNTLISLYCKKGMHYEALSVQDRMEMAG 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TY++LI G CR G    A+ LF ++ +          PN VTYT++IDG C+  
Sbjct: 272 ISPDIFTYNSLIYGFCREGRMREAVQLFRDIKD--------VTPNHVTYTSLIDGYCRVN 323

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L   M +K + P V+TYNS++   C      +AN LL EM ++ ++PD VT N
Sbjct: 324 DLDEALRLKEVMSEKGLYPTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCN 383

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CK G M  A ++ + M+  G+  +  T+  L+ GFC    ++ AKEL   M   
Sbjct: 384 TLINAYCKIGDMRSALKVKDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDA 443

Query: 388 G 388
           G
Sbjct: 444 G 444



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 168/380 (44%), Gaps = 44/380 (11%)

Query: 36  SSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDIT--AITPNEAFCI 93
           +S++K+  +D T     K+ ++L V     +   L   C  SG  +     ++  E  C+
Sbjct: 179 NSLAKDRLTD-TVWKIYKKMVKLGVVANIHVYNVLLHACCKSGDVEKAEKVLSEMELKCV 237

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F          P L ++N L     K   +   LS+  R+   G+ PD++TYN LI  FC
Sbjct: 238 F----------PDLFTYNTLISLYCKKGMHYEALSVQDRMEMAGISPDIFTYNSLIYGFC 287

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           + GR+    V L R ++   TP+ V +TSLI G C  + + EA  L   +   G  P VI
Sbjct: 288 REGRMREA-VQLFRDIKDV-TPNHVTYTSLIDGYCRVNDLDEALRLKEVMSEKGLYPTVI 345

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMAN-----------------------------GNGK 244
           TY++++  LC  G    A  L  EM+                               +  
Sbjct: 346 TYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKVKDKM 405

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G   K +  TY  +I G CK   +DKAKEL   M D   +P   TY+ L+  +C   + 
Sbjct: 406 VGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCKQQNE 465

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
                L  E++ +G+  DV  +  ++   CK  K+D A R+L LM  +G+  ++  +++L
Sbjct: 466 EAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFGDSVVYTSL 525

Query: 365 MDGFCLTGRVNHAKELFVSM 384
             G+   G+VN   ++   M
Sbjct: 526 AYGYWKVGKVNVTSDILDEM 545



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 53/261 (20%), Positives = 100/261 (38%), Gaps = 45/261 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L +         L   ++   + PD  T N LIN +CK+G +     V
Sbjct: 342 PTVITYNSILRKLCEGGRLRDANILLNEMSERKIEPDNVTCNTLINAYCKIGDMRSALKV 401

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++ +    D   + +LI G C    I +A  L   +   G  P+  TYS L++  C+
Sbjct: 402 KDKMVGAGLKLDQFTYKALIHGFCKAKEIDKAKELLFGMMDAGFSPSYCTYSWLVDSYCK 461

Query: 225 TGHTIVALNLFEEMA----------------------------------NGNGKFGVVCK 250
             +    + L +E+                                      G FG    
Sbjct: 462 QQNEEAVIKLPDELVRRGLCVDVSVYRALIRRFCKIEKIDCAQRVLGLMKDKGIFG---- 517

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            ++V YT++  G  K G V+   ++  +M  K +   +  Y S      YA+D    N +
Sbjct: 518 -DSVVYTSLAYGYWKVGKVNVTSDILDEMYKKRLMITLKIYRSF--NASYASD----NSI 570

Query: 311 LIEMMDQGVQPDVVTFNVIMD 331
           L    +  ++  +++ N++ D
Sbjct: 571 LSLFWNHVLERRLMSKNILKD 591


>gi|255660834|gb|ACU25586.1| pentatricopeptide repeat-containing protein [Dipyrena glaberrima]
          Length = 418

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 152/274 (55%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G   +  + +   L + + A G +P+V TYS LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFX 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK+G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQARNLINEMSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + + G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A+ L  +M  K 
Sbjct: 253 KNGKVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQARNLINEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+++ ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P++ T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/256 (34%), Positives = 139/256 (54%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     +    D    L   ++++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRQGDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   ++  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 229 FXEMLDKGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A NL  EM+          KP+ +TYTT+IDG CK+G ++ A E   +M ++NI
Sbjct: 289 KGDLKQARNLINEMSMKG------LKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           LL+ M   G  P+  T
Sbjct: 403 LLKEMQRDGHVPSVVT 418



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 109/190 (57%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L++  C+ G   ++ ++F+ +     K+G+  +P+ V++ T+++G  ++
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLSQSVFDAIR----KWGL--RPSVVSFNTLMNGYIRQ 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +DK   L   M    + PDV TY+ LI+G C  +  +EAN L  EM+D+G+ P+ VTF
Sbjct: 185 GDLDKGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFXEMLDKGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNGK+D A  + + M+ + ++P+  T++TL+ G C  G +  A+ L   M  
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQARNLINEMSM 304

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 305 KGLKPDKITY 314



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC     + A  L + + +  GK      F  +       + +   ++ +I 
Sbjct: 15  SYCTMIHFLCTHQMLLEAKTLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E +   ++        T   ++        +        E+++ G   
Sbjct: 75  AYLESGFLRDAIECYRLTREHKFRVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G++  +  + + +   G+ P+  +F+TLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEIRLSQSVFDAIRKWGLRPSVVSFNTLMNGYIRQGDLDKGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHASGVQPDVYTY 209



 Score = 43.1 bits (100), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 49/117 (41%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++M+   P   ++  L     K    +T     KR+    +  D   Y  LI+  C+ GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGSCKDGDLETAFEYRKRMIEENIRLDDVAYTALISGLCQEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
                 +L  +L     PD+  +T +I   C +  +   + L  +++  G  P+V+T
Sbjct: 362 SVDAEKMLREMLSVGLKPDSGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 418


>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
 gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
          Length = 367

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 98/307 (31%), Positives = 159/307 (51%), Gaps = 7/307 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF I + M + +   P L ++N +   L K   Y     +   + + GL PD  TYN L
Sbjct: 19  EAFEIMNSMAD-KGLKPSLFTYNAIINGLCKKGRYARAKGILIEMLNIGLSPDTTTYNTL 77

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+    S    + G +LR    PD V+F+SL+        + +A   F  +K FG 
Sbjct: 78  LVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGL 137

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ + Y+ L++G CR G+ + AL + +EM          C  + + Y TI++GLCKE  
Sbjct: 138 VPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQG------CVLDVIAYNTILNGLCKEKM 191

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +LF +M ++   PD  T+ +LIHG C   +  +A  L   M  + ++PD+V +N 
Sbjct: 192 LTDADKLFDEMVERGALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNT 251

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK G+M++AS L + MI R + PN  T+  L++ +C  G V+ A  L+  M   G
Sbjct: 252 LIDGFCKVGEMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKG 311

Query: 389 CKHTVFS 395
            K T+ +
Sbjct: 312 IKPTLVT 318



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 152/279 (54%), Gaps = 7/279 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IF  ML  +   P L SF+ L    ++ +H D  L  F+ +   GL PD   Y +
Sbjct: 88  SEAKEIFGEMLR-QGVVPDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTV 146

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +C+ G +     +   +L      D +A+ +++ GLC E  + +A  LF ++   G
Sbjct: 147 LMHGYCRNGNMLEALKIRDEMLEQGCVLDVIAYNTILNGLCKEKMLTDADKLFDEMVERG 206

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  T++TLI+G C+ G+   AL+LF  M   N       KP+ V Y T+IDG CK G
Sbjct: 207 ALPDFYTFTTLIHGHCQDGNMTKALSLFGTMTQRN------IKPDIVAYNTLIDGFCKVG 260

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++KA EL+  M  + I P+ +TY  LI+ +C     +EA  L   M+++G++P +VT N
Sbjct: 261 EMEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMIEKGIKPTLVTCN 320

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            ++   C++G   +A   L  MI +GV P+  +++TL++
Sbjct: 321 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLIN 359



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 61/185 (32%), Positives = 100/185 (54%), Gaps = 6/185 (3%)

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           ++TY+TLI   CR G    A  +   MA+         KP+  TY  II+GLCK+G   +
Sbjct: 1   MVTYNTLIGAYCREGLLEEAFEIMNSMADKG------LKPSLFTYNAIINGLCKKGRYAR 54

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           AK + ++M +  ++PD  TYN+L+   C  ++++EA  +  EM+ QGV PD+V+F+ +M 
Sbjct: 55  AKGILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMA 114

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
              +N  +D+A      M   G+ P+   ++ LM G+C  G +  A ++   M   GC  
Sbjct: 115 VFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVL 174

Query: 392 TVFSY 396
            V +Y
Sbjct: 175 DVIAY 179


>gi|115472343|ref|NP_001059770.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|27818007|dbj|BAC55770.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|50509504|dbj|BAD31185.1| putative CRP1 protein [Oryza sativa Japonica Group]
 gi|113611306|dbj|BAF21684.1| Os07g0513200 [Oryza sativa Japonica Group]
 gi|215715304|dbj|BAG95055.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 754

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 147/272 (54%), Gaps = 12/272 (4%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           G LA  +++      F  +   GL  D  TY  LIN  C+ G +     VL  +      
Sbjct: 369 GDLAAARNW------FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
            DAV +T LI G C   ++ EA  +  K+      PNV+TY+ L +GLC+ G    A  L
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             EM +   +       N  TY ++I+GLCK G +++A    + M +  + PDV TY ++
Sbjct: 483 LHEMCSKGLEL------NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTI 536

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I   C + + + A+ LL EM+D+G++P +VT+NV+M+  C +G+++   RLLE M+ + +
Sbjct: 537 IGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +PNT+T+++LM  +C+   +    E++  M S
Sbjct: 597 HPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 33/331 (9%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           TA    +A  +FD M     SPP + ++ ++          +T + L   + + GL  + 
Sbjct: 265 TAGRIKDAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNP 320

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
             Y  +I   C  G+VS    V+  ++      DA  FT+++ G C +  +  A   F +
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDE 380

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK--- 250
           ++  G   + +TY+ LINGLCR G    A  + +EM +       V         CK   
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 251 -----------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
                            PN VTYT + DGLCK+G V  A EL  +M  K +  ++ TYNS
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C A +  +A   +I+M + G++PDV T+  I+  LC++ ++D A  LL+ M+ +G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + P   T++ LM+GFC++GRV   K L   M
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++   TP+ V +T+L  GLC +  +  A  L  ++ + G + N+ TY++LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+    +M           KP+  TYTTII  LC+   +D+A  L  +M DK I P +
Sbjct: 512 EQAMRTMIDMDEAG------LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN L++GFC +        LL  M+++ + P+  T+N +M + C    M   + + + 
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKG 625

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ + V PN +T++ L+ G C    +  A      M   G + T  SY
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY 673



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 9/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L   L           LF  + S    PD+ TY I+++ +C +  +     +L  +
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                  + VA+TS+I  LC E ++ +A  +   +   G   +   ++T+++G CR G  
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A N F+EM     K G+    + VTYT +I+GLC+ G + +A+ +  +M+DK ++ D 
Sbjct: 372 AAARNWFDEMQ----KRGLAA--DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDA 425

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY  LI G+C      EA  +  +M+ + V P+VVT+  + D LCK G +  A+ LL  
Sbjct: 426 VTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHE 485

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+  N  T+++L++G C  G +  A    + M+  G K  V++Y
Sbjct: 486 MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-----TYNIL 148
           FD +L   PS P L      +G     +  + VL       +  LF +L      +YNIL
Sbjct: 201 FDLLLLCLPSAPLLLRLRQ-YGISPSPESCNAVLCRLPLDEAVQLFQELPEKNTCSYNIL 259

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  GR+     +   +      PD V +  ++ G C  S +  A  L +++ A G 
Sbjct: 260 LKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGL 316

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + N + Y+++I  LC  G    A+ + E+M       GVV   +   +TT++ G C++G 
Sbjct: 317 ELNPVAYTSVIALLCDEGQVSDAVRVVEDMV----MHGVVL--DAAVFTTVMSGFCRKGD 370

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+  F +M+ + +  D VTY +LI+G C A +  EA  +L EM D+G+  D VT+ V
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM EA  +   M+ + V PN  T++ L DG C  G V  A EL   M S G
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 389 CKHTVFSY 396
            +  +F+Y
Sbjct: 491 LELNIFTY 498



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 122/261 (46%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  R +P  +T +  L   L K         L   + S GL  +++TYN L
Sbjct: 443 EAFLVHNKMVQKRVTPNVVT-YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G +      +  +  +   PD   +T++I  LC    +  A +L  ++   G 
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGI 561

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP ++TY+ L+NG C +G       L E M   N        PNT TY +++   C E  
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN------IHPNTTTYNSLMKQYCIEKN 615

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  + + P+  TYN LI G C A +  EA     EM+++G +    ++N 
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++  L K  K  EA RL E M
Sbjct: 676 LIRLLNKKKKFTEARRLFEKM 696



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  + G L ++K  D   SL + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+   + SL+K  C E  +     ++  + +    PN  TY+ LI G C+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL    EM     +          +Y  +I  L K+    +A+ LF +M+ + +
Sbjct: 648 ARNMKEALYFHSEMIEKGFRL------TASSYNALIRLLNKKKKFTEARRLFEKMRKERL 701

Query: 285 NPDVVTYNSLI 295
             +   YN  I
Sbjct: 702 TAEPDVYNFYI 712


>gi|255570422|ref|XP_002526170.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534547|gb|EEF36246.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 504

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/261 (36%), Positives = 143/261 (54%), Gaps = 6/261 (2%)

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
           +G  P+L T + L+   C  G+V     +  ++ RS F  D + +  LI  L    +   
Sbjct: 3   SGYQPNLVTVSTLVKGMCFEGKVMDALELFDKMTRSGFQGDILLYGYLINALRKTRQARR 62

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  L  ++ +  C  N  TY  +I+ LC+ G  I  L +F EM N       +C PN + 
Sbjct: 63  AVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMG-----IC-PNVIV 116

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+++I+GLC+ G + +A  LF +M  + I  +V+TYNSLIH  C    W EA     +M+
Sbjct: 117 YSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWKEATRTFSQMV 176

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+ PDVVTF  ++D L K GK+ EA ++ ELMI +G  PN  T+++L++G CL  +++
Sbjct: 177 GEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMD 236

Query: 376 HAKELFVSMESMGCKHTVFSY 396
           HA  LF  M   G K  V SY
Sbjct: 237 HAVRLFEVMVERGIKIDVISY 257



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 157/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +  L   L KT+     + L +R+ S     + +TY ++I+  CK G    G  +   ++
Sbjct: 47  YGYLINALRKTRQARRAVELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMI 106

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ + ++SLI GLC   ++ EA  LF ++ + G K NVITY++LI+  CR G   
Sbjct: 107 NMGICPNVIVYSSLINGLCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHASCRFGLWK 166

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A   F +M  G G       P+ VT+TT+ID L K+G V +A ++F  M  +   P++V
Sbjct: 167 EATRTFSQMV-GEGIL-----PDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIV 220

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSL++G C  +  + A  L   M+++G++ DV+++N +++  C +GK +EA  L   M
Sbjct: 221 TYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKM 280

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P+ +T++ L+      GR+  AKELF +M+  G   ++ +Y
Sbjct: 281 QYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTY 327



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/283 (32%), Positives = 146/283 (51%), Gaps = 7/283 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
            P  +T   L+ G   + K  D  L LF ++  +G   D+  Y  LIN   K  +     
Sbjct: 6   QPNLVTVSTLVKGMCFEGKVMDA-LELFDKMTRSGFQGDILLYGYLINALRKTRQARRAV 64

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +  R+L    + +   +  +I  LC +   ++   +F ++   G  PNVI YS+LINGL
Sbjct: 65  ELHRRMLSEICSGNFFTYGLVIDSLCKDGLAIKGLKMFREMINMGICPNVIVYSSLINGL 124

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A+NLF+EM +         K N +TY ++I   C+ G   +A   F QM  +
Sbjct: 125 CRVGKLREAVNLFDEMVSQG------IKANVITYNSLIHASCRFGLWKEATRTFSQMVGE 178

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            I PDVVT+ +LI          EA  +   M+ QG  P++VT+N +++ LC + +MD A
Sbjct: 179 GILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHA 238

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            RL E+M+ RG+  +  +++TL++G+C +G+   A  LF  M+
Sbjct: 239 VRLFEVMVERGIKIDVISYNTLINGYCTSGKTEEAMTLFRKMQ 281



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 154/327 (47%), Gaps = 30/327 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M++       +T +N L     +   +      F ++   G+ PD+ T+  L
Sbjct: 132 EAVNLFDEMVSQGIKANVIT-YNSLIHASCRFGLWKEATRTFSQMVGEGILPDVVTFTTL 190

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+   K G+V   + +   +++    P+ V + SL+ GLC   ++  A  LF  +   G 
Sbjct: 191 IDHLSKKGKVQEAYKIFELMIKQGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGI 250

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN------------------GNGKFGV--- 247
           K +VI+Y+TLING C +G T  A+ LF +M                     NG+      
Sbjct: 251 KIDVISYNTLINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKE 310

Query: 248 ------VC--KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                 +C   P+  TYT ++DGLCK G +++A ++F  +K     P +  Y+ LI G  
Sbjct: 311 LFNNMQICGQSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMF 370

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A  W  A  +  E+   G+ P++VT+N++++ LCK GK+ EA RL   M   G   +  
Sbjct: 371 QARRWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEI 430

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMES 386
           +F+ ++ GF    +V  A E    M  
Sbjct: 431 SFNFIIRGFLQENQVQKAMEFLKRMRE 457



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 94/339 (27%), Positives = 155/339 (45%), Gaps = 42/339 (12%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M+NM   P  +   +L+ G L +       ++LF  + S G+  ++ TYN LI+  
Sbjct: 101 MFREMINMGICPNVIVYSSLING-LCRVGKLREAVNLFDEMVSQGIKANVITYNSLIHAS 159

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G          +++     PD V FT+LI  L  + ++ EA  +F  +   G  PN+
Sbjct: 160 CRFGLWKEATRTFSQMVGEGILPDVVTFTTLIDHLSKKGKVQEAYKIFELMIKQGEAPNI 219

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY++L+NGLC       A+ LFE M     K  V      ++Y T+I+G C  G  ++A
Sbjct: 220 VTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDV------ISYNTLINGYCTSGKTEEA 273

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             LF +M+ + + P + TY  L+           A  L   M   G  P + T+ V++D 
Sbjct: 274 MTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICGQSPSLDTYTVLLDG 333

Query: 333 LCKNGKMDEA---------------SRLLELMI--------------------LRGVNPN 357
           LCKNG ++EA                R+  ++I                      G+ PN
Sbjct: 334 LCKNGCIEEAIDVFRSLKSIKYKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPN 393

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++ +++G C  G++  A+ LFV ME  GC+    S+
Sbjct: 394 IVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISF 432



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 139/278 (50%), Gaps = 9/278 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA+ IF+ M+  +   P + ++N L   L      D  + LF+ +   G+  D+ +YN 
Sbjct: 201 QEAYKIFELMIK-QGEAPNIVTYNSLLNGLCLHHQMDHAVRLFEVMVERGIKIDVISYNT 259

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +C  G+      +  ++     TP    +T L+K L    RI  A  LF  ++  G
Sbjct: 260 LINGYCTSGKTEEAMTLFRKMQYEELTPSITTYTILLKALYQNGRIRTAKELFNNMQICG 319

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TY+ L++GLC+ G    A+++F  + +      +  KP+   Y+ +I G+ +  
Sbjct: 320 QSPSLDTYTVLLDGLCKNGCIEEAIDVFRSLKS------IKYKPSIRIYSILIGGMFQAR 373

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             + A E+F ++    + P++VTYN +I+G C      EA  L ++M + G + D ++FN
Sbjct: 374 RWESAMEIFDEIPTVGLVPNIVTYNIMINGLCKEGKLLEAERLFVQMEESGCEQDEISFN 433

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            I+    +  ++ +A   L+ M  +  +PN S   TLM
Sbjct: 434 FIIRGFLQENQVQKAMEFLKRMREKNFSPNDSV--TLM 469



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 69/132 (52%), Gaps = 1/132 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  + +++   P +  +++L G + + + +++ + +F  + + GL P++ TYNI+
Sbjct: 342 EAIDVFRSLKSIK-YKPSIRIYSILIGGMFQARRWESAMEIFDEIPTVGLVPNIVTYNIM 400

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G++     +  ++  S    D ++F  +I+G   E+++ +A     +++    
Sbjct: 401 INGLCKEGKLLEAERLFVQMEESGCEQDEISFNFIIRGFLQENQVQKAMEFLKRMREKNF 460

Query: 209 KPNVITYSTLIN 220
            PN      L+N
Sbjct: 461 SPNDSVTLMLVN 472


>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Glycine max]
          Length = 747

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 106/302 (35%), Positives = 156/302 (51%), Gaps = 10/302 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+N    P  LT +N +     K         + K     G  PD +TY  LIN FCK G
Sbjct: 286 MVNGGFEPDDLT-YNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCKDG 344

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
                  V    L     P  V + +LIKGL  +  I+ A  L  ++   GC PN+ TY+
Sbjct: 345 DPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWTYN 404

Query: 217 TLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
            +INGLC+ G    A +L ++ +A G       C P+  TY T+IDG CK+  +D A E+
Sbjct: 405 LVINGLCKMGCVSDASHLVDDAIAKG-------CPPDIFTYNTLIDGYCKQLKLDSATEM 457

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +M  + + PDV+TYN+L++G C A    E   +   M ++G  P+++T+N+I+D LCK
Sbjct: 458 VNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCK 517

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM-GCKHTVF 394
             K++EA  LL  M  +G+ P+  +F TL  GFC  G ++ A +LF  ME      HT  
Sbjct: 518 AKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTA 577

Query: 395 SY 396
           +Y
Sbjct: 578 TY 579



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 157/331 (47%), Gaps = 51/331 (15%)

Query: 87  PNEAFCIFDYMLN--MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           P+ A  +F   L   +RPS   +  +N L   L++       L L   +   G  P+++T
Sbjct: 346 PDRAMAVFKDGLGKGLRPS---IVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWT 402

Query: 145 YNILINCFCKMGRVSHG-FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           YN++IN  CKMG VS    +V   I + C  PD   + +LI G C + ++  A  +  ++
Sbjct: 403 YNLVINGLCKMGCVSDASHLVDDAIAKGC-PPDIFTYNTLIDGYCKQLKLDSATEMVNRM 461

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            + G  P+VITY+TL+NGLC+ G +   + +F+ M          C PN +TY  I+D L
Sbjct: 462 WSQGMTPDVITYNTLLNGLCKAGKSEEVMEIFKAMEEKG------CTPNIITYNIIVDSL 515

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ------ 317
           CK   V++A +L  +MK K + PDVV++ +L  GFC   D + A  L   M  Q      
Sbjct: 516 CKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHT 575

Query: 318 ------------------------------GVQPDVVTFNVIMDELCKNGKMDEASR-LL 346
                                         G  PD  T+ V++D  CK G + +  + LL
Sbjct: 576 TATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLL 635

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           E M  R + P+ +TF  +++  C+  +V+ A
Sbjct: 636 ENMEKRFI-PSLTTFGRVLNCLCVKDKVHEA 665



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 76/255 (29%), Positives = 127/255 (49%), Gaps = 5/255 (1%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + ++N L     K    D+   +  R+ S G+ PD+ TYN L+N  CK G+      
Sbjct: 432 PPDIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYNTLLNGLCKAGKSEEVME 491

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +     TP+ + +  ++  LC   ++ EA  L  ++K+ G KP+V+++ TL  G C
Sbjct: 492 IFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFC 551

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A  LF  M     K   VC   T TY  I+    ++  ++ A +LF  MK+  
Sbjct: 552 KIGDIDGAYQLFRRME----KQYDVCH-TTATYNIIVSAFSEQLNMNMAMKLFSVMKNSG 606

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +PD  TY  +I GFC   +  +    L+E M++   P + TF  +++ LC   K+ EA 
Sbjct: 607 CDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAV 666

Query: 344 RLLELMILRGVNPNT 358
            ++ LM+ +G+ P T
Sbjct: 667 GIIHLMLQKGIVPET 681



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 147/301 (48%), Gaps = 15/301 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S N +   L +  +++    ++ R+   G+  D+YTY I I  FCK  R      +
Sbjct: 109 PSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCKTARPYAALRL 168

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       +AVA+ +++ GL        A  LF ++ A    P+V+ ++ L++ LC+
Sbjct: 169 LRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCK 228

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA---------KEL 275
            G    +  L  ++     K GV   PN  T+   + GLC+EG +D+A         +E 
Sbjct: 229 KGLVFESERLLGKVL----KRGVC--PNLFTFNIFVQGLCREGALDRAVRNSRVVEAEEY 282

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +M +    PD +TYNS+I G+C      +AN +L + + +G +PD  T+  +++  CK
Sbjct: 283 LRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFTYCSLINGFCK 342

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           +G  D A  + +  + +G+ P+   ++TL+ G    G +  A +L   M   GC   +++
Sbjct: 343 DGDPDRAMAVFKDGLGKGLRPSIVLYNTLIKGLSQQGLILPALQLMNEMAENGCLPNIWT 402

Query: 396 Y 396
           Y
Sbjct: 403 Y 403



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 71/276 (25%), Positives = 132/276 (47%), Gaps = 15/276 (5%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           F+R++     P ++++N ++N   + G  +    V  R+       D   +T  IK  C 
Sbjct: 99  FERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRMRDRGVQSDVYTYTIRIKSFCK 158

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
            +R   A  L   +   GC  N + Y T++ GL  +G    A  LF+EM           
Sbjct: 159 TARPYAALRLLRNMPELGCDSNAVAYCTVVAGLYDSGEHDHARELFDEM------LARCL 212

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN---- 305
            P+ V +  ++  LCK+G V +++ L  ++  + + P++ T+N  + G C     +    
Sbjct: 213 CPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNLFTFNIFVQGLCREGALDRAVR 272

Query: 306 -----EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                EA   L +M++ G +PD +T+N I+D  CK G + +A+R+L+  + +G  P+  T
Sbjct: 273 NSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMVQDANRVLKDAVFKGFKPDEFT 332

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +L++GFC  G  + A  +F      G + ++  Y
Sbjct: 333 YCSLINGFCKDGDPDRAMAVFKDGLGKGLRPSIVLY 368



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 110/262 (41%), Gaps = 50/262 (19%)

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKP---------------------------- 210
           A+   +K    + ++ EA   F ++  + C P                            
Sbjct: 78  AYIEAMKNYGRKGKVQEAVDTFERMDFYNCDPSVHSHNAIMNILVEFGYHNQAHKVYMRM 137

Query: 211 -------NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                  +V TY+  I   C+T     AL L   M        + C  N V Y T++ GL
Sbjct: 138 RDRGVQSDVYTYTIRIKSFCKTARPYAALRLLRNMPE------LGCDSNAVAYCTVVAGL 191

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
              G  D A+ELF +M  + + PDVV +N L+H  C      E+  LL +++ +GV P++
Sbjct: 192 YDSGEHDHARELFDEMLARCLCPDVVAFNKLVHVLCKKGLVFESERLLGKVLKRGVCPNL 251

Query: 324 VTFNVIMDELCKNGKMD---------EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            TFN+ +  LC+ G +D         EA   L  M+  G  P+  T+++++DG+C  G V
Sbjct: 252 FTFNIFVQGLCREGALDRAVRNSRVVEAEEYLRKMVNGGFEPDDLTYNSIIDGYCKKGMV 311

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  +       G K   F+Y
Sbjct: 312 QDANRVLKDAVFKGFKPDEFTY 333



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/174 (22%), Positives = 74/174 (42%), Gaps = 19/174 (10%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GDI       A+ +F  M           ++N++    ++  + +  + LF  + ++G  
Sbjct: 554 GDIDG-----AYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNMAMKLFSVMKNSGCD 608

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD YTY ++I+ FCKMG ++ G+  L   +   F P    F  ++  LC + ++ EA  +
Sbjct: 609 PDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDKVHEAVGI 668

Query: 200 FTKLKAFGCKPNVITY------------STLINGLCRTGHTIVALNLFEEMANG 241
              +   G  P  +                L+  L + GH  +A   +E + +G
Sbjct: 669 IHLMLQKGIVPETVNTIFEADKKVVAAPKILVEDLLKKGH--IAYYTYELLYDG 720


>gi|242067351|ref|XP_002448952.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
 gi|241934795|gb|EES07940.1| hypothetical protein SORBIDRAFT_05g002320 [Sorghum bicolor]
          Length = 455

 Score =  175 bits (443), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 159/327 (48%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN+ F   AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    V 
Sbjct: 28  PNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALCKLGRVDDAEVK 87

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCA----------------------------------- 189
             +++    TP+ V F+SL+ GLC+                                   
Sbjct: 88  FNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLNVGIHPNIVFFNTILCNLCK 147

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E R+ME   L   ++  G +P+VI+Y+TLI+G C  G    A  L E M +      V  
Sbjct: 148 EGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVS------VGL 201

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KPN+ +Y T++ G CK G +D A  LF +M    I P VVTYN+++HG      ++EA  
Sbjct: 202 KPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKE 261

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L + M++ G +  + T+N I++ LCK+  +DEA ++ + +  +G+  N  TF+ ++    
Sbjct: 262 LYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALL 321

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             GR   A +LF ++ + G    V +Y
Sbjct: 322 KGGRKEDAMDLFAAIPANGLVPDVVTY 348



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 146/268 (54%), Gaps = 6/268 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L   + + G+ P+ + +NI  + + K G +     +  ++ +   +PDAV++ +LI  LC
Sbjct: 17  LLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPDAVSYGALIDALC 76

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              R+ +A   F ++   G  PN++ +S+L+ GLC          LF EM N      V 
Sbjct: 77  KLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSIDKWEKVEELFFEMLN------VG 130

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             PN V + TI+  LCKEG V + + L   ++   + PDV++YN+LI G C A   +EA+
Sbjct: 131 IHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEAS 190

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL  M+  G++P+  ++N ++   CK G++D A  L   M+  G+ P   T++T++ G 
Sbjct: 191 KLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGL 250

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T R + AKEL+++M + G K  +++Y
Sbjct: 251 FQTKRFSEAKELYLNMINSGTKWGIYTY 278



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 119/214 (55%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           ++ G   +  + E   L   + A G  PN   ++   +   + G    A+++F +M    
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMR--- 57

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            + G+   P+ V+Y  +ID LCK G VD A+  F QM ++ + P++V ++SL++G C  +
Sbjct: 58  -QHGL--SPDAVSYGALIDALCKLGRVDDAEVKFNQMINEGVTPNIVVFSSLVYGLCSID 114

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
            W +   L  EM++ G+ P++V FN I+  LCK G++ E  RL++ +   GV P+  +++
Sbjct: 115 KWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYN 174

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           TL+DG CL G ++ A +L   M S+G K   FSY
Sbjct: 175 TLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSY 208



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/249 (30%), Positives = 133/249 (53%), Gaps = 6/249 (2%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +   G +S    +L  ++ +  +P+   F            I +A  +F K++  G
Sbjct: 1   MLHGYGNKGALSEMHDLLNLMVANGISPNHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHG 60

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ ++Y  LI+ LC+ G    A   F +M N     GV   PN V +++++ GLC   
Sbjct: 61  LSPDAVSYGALIDALCKLGRVDDAEVKFNQMINE----GVT--PNIVVFSSLVYGLCSID 114

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             +K +ELF +M +  I+P++V +N+++   C      E   L+  +   GV+PDV+++N
Sbjct: 115 KWEKVEELFFEMLNVGIHPNIVFFNTILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYN 174

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  C  G +DEAS+LLE M+  G+ PN+ +++TL+ G+C  GR++ A  LF  M S 
Sbjct: 175 TLIDGHCLAGTIDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSN 234

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 235 GITPGVVTY 243



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 84/319 (26%), Positives = 146/319 (45%), Gaps = 30/319 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F+ M+N   +P  +   +L++G L     ++ V  LF  + + G+ P++  +N 
Sbjct: 82  DDAEVKFNQMINEGVTPNIVVFSSLVYG-LCSIDKWEKVEELFFEMLNVGIHPNIVFFNT 140

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   CK GRV  G  ++  I      PD +++ +LI G C    I EA+ L   + + G
Sbjct: 141 ILCNLCKEGRVMEGQRLVDSIECMGVRPDVISYNTLIDGHCLAGTIDEASKLLEGMVSVG 200

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC------------------ 249
            KPN  +Y+TL++G C+ G    A +LF +M +     GVV                   
Sbjct: 201 LKPNSFSYNTLLHGYCKAGRIDSAYSLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAK 260

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      K    TY TI++GLCK   VD+A ++F  +  K +  +++T+  +I   
Sbjct: 261 ELYLNMINSGTKWGIYTYNTILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGAL 320

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                  +A  L   +   G+ PDVVT+ V+ + L + G ++E   L   M   G  PN+
Sbjct: 321 LKGGRKEDAMDLFAAIPANGLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNS 380

Query: 359 STFSTLMDGFCLTGRVNHA 377
              + L+      G ++ A
Sbjct: 381 QMLNALVRRLLHRGDISRA 399



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 128/278 (46%), Gaps = 10/278 (3%)

Query: 105 PPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P + S+N L    CLA T   D    L + + S GL P+ ++YN L++ +CK GR+   +
Sbjct: 168 PDVISYNTLIDGHCLAGT--IDEASKLLEGMVSVGLKPNSFSYNTLLHGYCKAGRIDSAY 225

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +  ++L +  TP  V + +++ GL    R  EA  L+  +   G K  + TY+T++NGL
Sbjct: 226 SLFRKMLSNGITPGVVTYNTILHGLFQTKRFSEAKELYLNMINSGTKWGIYTYNTILNGL 285

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C++     A  +F+ + +         + N +T+T +I  L K G  + A +LF  +   
Sbjct: 286 CKSNCVDEAFKMFQSLCSKG------LQLNIITFTIMIGALLKGGRKEDAMDLFAAIPAN 339

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PDVVTY  +           E + L   M   G  P+    N ++  L   G +  A
Sbjct: 340 GLVPDVVTYRVVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALVRRLLHRGDISRA 399

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
              L  +  R  +   ST S L+  F      +HAK L
Sbjct: 400 GAYLSKLDERNFSVEASTTSMLISIFSSDEYQHHAKSL 437


>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
 gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 167/321 (52%), Gaps = 38/321 (11%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV----- 158
           PPP++ +NLLF C  K    D V+ L+K +    + P  YT+N+LI+  C+MG +     
Sbjct: 115 PPPISFYNLLFRCSLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENARE 174

Query: 159 ------------------------------SHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
                                         SHG  +L  +  S   P+ VA+ ++I  LC
Sbjct: 175 VFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLC 234

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E + +EA  L  K++  G  P+++T++  I  LC++G  + A  +F +M   + + G+ 
Sbjct: 235 GEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDM-QIDEEMGLP 293

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            KPNTVTY  +++G C EG  ++A+ +F  MK+      + +YN  + G   +    EA+
Sbjct: 294 -KPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSE-TLSLRSYNIWMLGLVRSGKLLEAH 351

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +L EM ++ ++P++ ++N+++  LCK G   +A  +L LM   GV P+T T+STL+ G+
Sbjct: 352 LILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGY 411

Query: 369 CLTGRVNHAKELFVSMESMGC 389
           C  G++  A  +   M  +GC
Sbjct: 412 CRRGKILEANYVLREMIQVGC 432



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 176/396 (44%), Gaps = 90/396 (22%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M N       L S+N+    L ++        +   +    + P+LY+YNIL
Sbjct: 315 EARAIFDSMKN--SETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNIL 372

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G  S    +LG +  S   PD V +++L+ G C   +I+EA  +  ++   GC
Sbjct: 373 VHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGC 432

Query: 209 KPNV-----------------------------------ITYSTLINGLCRTGHTIVALN 233
            PN+                                   +T +T+INGLC+ G+   A+ 
Sbjct: 433 FPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIE 492

Query: 234 LFEEM-ANGNGKFGVV----------------CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +   M   G+   G +                C P+++TY TII GLCK G VD+AK+  
Sbjct: 493 IVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKL 552

Query: 277 LQMKDKNINPDVV-----------------------------------TYNSLIHGFCYA 301
           L+M  K ++PD +                                   TYNSLI G    
Sbjct: 553 LEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSE 612

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           N   E   L+ EM ++G+ P+V T+N I+  L + GK+ +A+ LL+ M+ +G++PN  TF
Sbjct: 613 NQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTF 672

Query: 362 STLMDGFCLTGRVNHAKELF-VSMESMGCKHTVFSY 396
             L+  F        A+ELF +++   G K +++S+
Sbjct: 673 RILIGAFFKACDFGAAQELFEIALSLCGHKESLYSF 708



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 41/302 (13%)

Query: 124 DTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++ + LF  R N     PD  TY  +I   CK+GRV      L  ++    +PD++ F +
Sbjct: 510 NSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDT 569

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
            I   C + ++  A  +  +++  GC  ++ TY++LI GL           L +EM    
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKE-R 628

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G F     PN  TY  II  L + G +  A  L  +M  K I+P++ T+  LI  F  A 
Sbjct: 629 GIF-----PNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKAC 683

Query: 303 DWNEANCL---------------------------------LIEM-MDQGVQPDVVTFNV 328
           D+  A  L                                 L E  +D+ +      +  
Sbjct: 684 DFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRD 743

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++++LCK+GK+D+AS +L  M+ +  + + ++F  ++D     G  + A E    M  M 
Sbjct: 744 LIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMMEMA 803

Query: 389 CK 390
            +
Sbjct: 804 SE 805



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 115/286 (40%), Gaps = 28/286 (9%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD   N +   P   ++  + G L K    D        +    L PD   ++  I  +
Sbjct: 515 LFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNY 574

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G++S  F VL  + +         + SLI+GL +E++I E   L  ++K  G  PNV
Sbjct: 575 CKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNV 634

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKFGV------- 247
            TY+ +I+ L   G    A  L +EM                        FG        
Sbjct: 635 YTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEI 694

Query: 248 ---VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
              +C      Y+ + + L   G   KAKELF    D+++      Y  LI   C     
Sbjct: 695 ALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKL 754

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           ++A+ +L +MMD+    D  +F  ++DEL K G    A    E M+
Sbjct: 755 DDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMM 800



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 7/216 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N L   L        +  L   +   G+FP++YTYN +I+C  + G++     +L 
Sbjct: 599 LRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLD 658

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L+   +P+   F  LI           A  LF    +  C      YS + N L   G
Sbjct: 659 EMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSL-CGHKESLYSFMFNELLAGG 717

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T+ A  LFE   + +             Y  +I+ LCK+G +D A  +  +M DK  + 
Sbjct: 718 ETLKAKELFEAALDRSLAL------KNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSF 771

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           D  ++  +I         + A+     MM+   + D
Sbjct: 772 DPASFMPVIDELGKRGSKHAADEFAERMMEMASETD 807



 Score = 41.6 bits (96), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P +  +N++     K  ++D    L + M +  V P T TF+ L+   C  G + +A+E+
Sbjct: 116 PPISFYNLLFRCSLKESRVDCVIWLYKDMAVARVKPQTYTFNLLISALCEMGYLENAREV 175

Query: 381 FVSMESMGCKHTVFS 395
           F  M   GCK   FS
Sbjct: 176 FDKMSEKGCKPNEFS 190


>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Cucumis sativus]
          Length = 875

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 167/321 (52%), Gaps = 38/321 (11%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV----- 158
           PPP++ +NLLF C  K    D V+ L+K +    + P  YT+N+LI+  C+MG +     
Sbjct: 115 PPPISFYNLLFRCSLKESRVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLENARE 174

Query: 159 ------------------------------SHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
                                         SHG  +L  +  S   P+ VA+ ++I  LC
Sbjct: 175 VFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHGIDLLDEMRSSGALPNRVAYNTVISSLC 234

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E + +EA  L  K++  G  P+++T++  I  LC++G  + A  +F +M   + + G+ 
Sbjct: 235 GEGQTVEAEKLVEKMREVGLSPDIVTFNCRIAALCKSGQILEASRIFRDM-QIDEEMGLP 293

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            KPNTVTY  +++G C EG  ++A+ +F  MK+      + +YN  + G   +    EA+
Sbjct: 294 -KPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNSE-TLSLRSYNIWMLGLVRSGKLLEAH 351

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +L EM ++ ++P++ ++N+++  LCK G   +A  +L LM   GV P+T T+STL+ G+
Sbjct: 352 LILNEMAEKNIKPNLYSYNILVHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGY 411

Query: 369 CLTGRVNHAKELFVSMESMGC 389
           C  G++  A  +   M  +GC
Sbjct: 412 CRRGKILEANYVLREMIQVGC 432



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 176/396 (44%), Gaps = 90/396 (22%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M N       L S+N+    L ++        +   +    + P+LY+YNIL
Sbjct: 315 EARAIFDSMKN--SETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNIL 372

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G  S    +LG +  S   PD V +++L+ G C   +I+EA  +  ++   GC
Sbjct: 373 VHGLCKYGMFSDARSILGLMRESGVAPDTVTYSTLLHGYCRRGKILEANYVLREMIQVGC 432

Query: 209 KPNV-----------------------------------ITYSTLINGLCRTGHTIVALN 233
            PN+                                   +T +T+INGLC+ G+   A+ 
Sbjct: 433 FPNMYTCNILLHSLWKEGRASEAEDLLQMMNERGYGLDNVTCNTMINGLCKAGNLDKAIE 492

Query: 234 LFEEM-ANGNGKFGVV----------------CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +   M   G+   G +                C P+++TY TII GLCK G VD+AK+  
Sbjct: 493 IVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKL 552

Query: 277 LQMKDKNINPDVV-----------------------------------TYNSLIHGFCYA 301
           L+M  K ++PD +                                   TYNSLI G    
Sbjct: 553 LEMIGKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSE 612

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           N   E   L+ EM ++G+ P+V T+N I+  L + GK+ +A+ LL+ M+ +G++PN  TF
Sbjct: 613 NQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTF 672

Query: 362 STLMDGFCLTGRVNHAKELF-VSMESMGCKHTVFSY 396
             L+  F        A+ELF +++   G K +++S+
Sbjct: 673 RILIGAFFKACDFGAAQELFEIALSLCGHKESLYSF 708



 Score = 91.7 bits (226), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 129/302 (42%), Gaps = 41/302 (13%)

Query: 124 DTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           ++ + LF  R N     PD  TY  +I   CK+GRV      L  ++    +PD++ F +
Sbjct: 510 NSFIDLFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDT 569

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
            I   C + ++  A  +  +++  GC  ++ TY++LI GL           L +EM    
Sbjct: 570 FIYNYCKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKE-R 628

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G F     PN  TY  II  L + G +  A  L  +M  K I+P++ T+  LI  F  A 
Sbjct: 629 GIF-----PNVYTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKAC 683

Query: 303 DWNEANCL---------------------------------LIEM-MDQGVQPDVVTFNV 328
           D+  A  L                                 L E  +D+ +      +  
Sbjct: 684 DFGAAQELFEIALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRD 743

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++++LCK+GK+D+AS +L  M+ +  + + ++F  ++D     G  + A E    M  M 
Sbjct: 744 LIEKLCKDGKLDDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMMEMA 803

Query: 389 CK 390
            +
Sbjct: 804 SE 805



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/286 (25%), Positives = 115/286 (40%), Gaps = 28/286 (9%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD   N +   P   ++  + G L K    D        +    L PD   ++  I  +
Sbjct: 515 LFDIRNNGKKCLPDSITYATIIGGLCKVGRVDEAKKKLLEMIGKKLSPDSLIFDTFIYNY 574

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G++S  F VL  + +         + SLI+GL +E++I E   L  ++K  G  PNV
Sbjct: 575 CKQGKLSSAFRVLKEMEKKGCNKSLRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNV 634

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKFGV------- 247
            TY+ +I+ L   G    A  L +EM                        FG        
Sbjct: 635 YTYNNIISCLSEGGKLKDATCLLDEMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEI 694

Query: 248 ---VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
              +C      Y+ + + L   G   KAKELF    D+++      Y  LI   C     
Sbjct: 695 ALSLCGHKESLYSFMFNELLAGGETLKAKELFEAALDRSLALKNFLYRDLIEKLCKDGKL 754

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           ++A+ +L +MMD+    D  +F  ++DEL K G    A    E M+
Sbjct: 755 DDASFILHKMMDKQYSFDPASFMPVIDELGKRGSKHAADEFAERMM 800



 Score = 68.2 bits (165), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 7/216 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N L   L        +  L   +   G+FP++YTYN +I+C  + G++     +L 
Sbjct: 599 LRTYNSLIQGLGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDATCLLD 658

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L+   +P+   F  LI           A  LF    +  C      YS + N L   G
Sbjct: 659 EMLQKGISPNIYTFRILIGAFFKACDFGAAQELFEIALSL-CGHKESLYSFMFNELLAGG 717

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T+ A  LFE   + +             Y  +I+ LCK+G +D A  +  +M DK  + 
Sbjct: 718 ETLKAKELFEAALDRSLAL------KNFLYRDLIEKLCKDGKLDDASFILHKMMDKQYSF 771

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           D  ++  +I         + A+     MM+   + D
Sbjct: 772 DPASFMPVIDELGKRGSKHAADEFAERMMEMASETD 807



 Score = 41.6 bits (96), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P +  +N++     K  ++D    L + M +  V P T TF+ L+   C  G + +A+E+
Sbjct: 116 PPISFYNLLFRCSLKESRVDCVIWLYKDMAVAKVKPQTYTFNLLISALCEMGYLENAREV 175

Query: 381 FVSMESMGCKHTVFS 395
           F  M   GCK   FS
Sbjct: 176 FDKMSEKGCKPNEFS 190


>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
 gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
          Length = 647

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 158/289 (54%), Gaps = 7/289 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN L   L K +  +  ++  K+++    FP L+TY  L++ F K+GR+    + L   
Sbjct: 256 TFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEA 315

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +   F PDAV +TS+I GLC   R+ E    F +++  G +P+ +TY+ LI+G  +    
Sbjct: 316 VERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYAALIDGFMKAKMI 375

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  ++ +M       G V   +TVTY  I+DGLCK G V +A   FL M+++     V
Sbjct: 376 PKAHRVYRQMLQS----GTVV--STVTYNIILDGLCKAGRVAEAYATFLAMEERGCVATV 429

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY++L+ GFC   + + A  L   M+D+G +P++V++N+I+  LC+ GK+ +A    E 
Sbjct: 430 VTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGKLAKAYFYFEK 489

Query: 349 MILRGVNPNTSTFSTLMDGFCLT-GRVNHAKELFVSMESMGCKHTVFSY 396
           ++ R + P+  TF++ + G C     V    ELF SM S G    + SY
Sbjct: 490 LLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSY 538



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 107/356 (30%), Positives = 164/356 (46%), Gaps = 45/356 (12%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G + A   +EA  I + M+  + + P L ++ ++   L+K    +    +F  +   G 
Sbjct: 119 DGLLKAGRLDEAMAILEQMVE-KGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGC 177

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC----FTPDAV---------------- 178
            PD + Y  LI+   K+G++    V L +++ +       PD V                
Sbjct: 178 RPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLE 237

Query: 179 ------------------AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
                              F  L+  LC   R  EA A   K+    C P + TY++L++
Sbjct: 238 DALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLVD 297

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G  + G    AL   +E      + G +  P+ VTYT+IIDGLCK G V++  E F +M+
Sbjct: 298 GFLKLGRLDEALLQLKEAV----ERGFI--PDAVTYTSIIDGLCKLGRVEEGCERFHEMR 351

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           ++   PD VTY +LI GF  A    +A+ +  +M+  G     VT+N+I+D LCK G++ 
Sbjct: 352 NRGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAGRVA 411

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA      M  RG      T+S LMDGFC  G V+ A ELF  M   GC+  + SY
Sbjct: 412 EAYATFLAMEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSY 467



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 154/338 (45%), Gaps = 44/338 (13%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +L+  P  P + +F ++   L + K  D   S+ +R    G  PD  TYN+ I+  CK  
Sbjct: 31  LLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGCEPDYVTYNVFIDGLCKAE 90

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           RV   F +L ++      P  V +T+L+ GL    R+ EA A+  ++   G  P + TY+
Sbjct: 91  RVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYT 150

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            +I+GL + G    A  +F +M  GNG     C+P+   YT +I GL K G +D+A    
Sbjct: 151 VVIDGLSKAGRVEEARRIFVDML-GNG-----CRPDAFVYTALISGLAKIGKLDEALVYL 204

Query: 277 LQMKD----KNINPDVV----------------------------------TYNSLIHGF 298
            QM +    + + PDVV                                  T+N L+   
Sbjct: 205 NQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDELDDSLDLTHFTFNPLVAAL 264

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C A    EA   + +M ++   P + T+  ++D   K G++DEA   L+  + RG  P+ 
Sbjct: 265 CKAERTEEAIAFVKKMSERRCFPTLFTYTSLVDGFLKLGRLDEALLQLKEAVERGFIPDA 324

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+++++DG C  GRV    E F  M + G +    +Y
Sbjct: 325 VTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTY 362



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 145/298 (48%), Gaps = 11/298 (3%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  M N R   P   ++  L     K K       +++++  +G      TYNI+++  C
Sbjct: 347 FHEMRN-RGYEPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLC 405

Query: 154 KMGRVSHGFVV-LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           K GRV+  +   L    R C     V +++L+ G C+E  +  A  LF ++   GC+PN+
Sbjct: 406 KAGRVAEAYATFLAMEERGCVAT-VVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNL 464

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-GFVDK 271
           ++Y+ +I GLCR G    A   FE++         +C P+  T+ + + GLC+    V  
Sbjct: 465 VSYNIIIRGLCRAGKLAKAYFYFEKLLQRR-----LC-PDVYTFNSFLHGLCQRLDTVGD 518

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             ELF  M  +  +P++ +Y+ L+ G C A        +  EM+ +GV PDVV FN ++ 
Sbjct: 519 GVELFESMVSQGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIR 578

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            LC  G++DEA  +   +  R   P+  ++ +L+D      R+  A+ L   M+  GC
Sbjct: 579 WLCIAGRVDEALEVFRELERRSA-PDAWSYWSLLDALSRCERMEEARLLSFHMKLQGC 635



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 65/181 (35%), Positives = 100/181 (55%), Gaps = 9/181 (4%)

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           + L+NGLC+TG    A+ L +EM          C P+ V +T +I+GLC+E  +D+A  +
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMP---------CSPDMVAFTVVINGLCREKRLDEAFSV 63

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +       PD VTYN  I G C A   ++A  LL +M ++   P  VT+  ++D L K
Sbjct: 64  LERAVRAGCEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            G++DEA  +LE M+ +G +P   T++ ++DG    GRV  A+ +FV M   GC+   F 
Sbjct: 124 AGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFV 183

Query: 396 Y 396
           Y
Sbjct: 184 Y 184



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 67/213 (31%), Positives = 110/213 (51%), Gaps = 9/213 (4%)

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           T+L+ GLC   ++  A  L  ++    C P+++ ++ +INGLCR      A ++ E    
Sbjct: 13  TALLNGLCKTGQLDRAMLLLDEMP---CSPDMVAFTVVINGLCREKRLDEAFSVLERAVR 69

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                   C+P+ VTY   IDGLCK   VD A +L  +M +K   P  VTY +L+ G   
Sbjct: 70  AG------CEPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLK 123

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           A   +EA  +L +M+++G  P + T+ V++D L K G+++EA R+   M+  G  P+   
Sbjct: 124 AGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFV 183

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           ++ L+ G    G+++ A      M   GC   V
Sbjct: 184 YTALISGLAKIGKLDEALVYLNQMVENGCARGV 216



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 1/136 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+  F+ +L  R  P   T  + L G   +       + LF+ + S G  P+L++Y+IL
Sbjct: 482 KAYFYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSYSIL 541

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C+ G +     +   ++     PD V F +LI+ LC   R+ EA  +F +L+    
Sbjct: 542 MDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAGRVDEALEVFRELERRSA 601

Query: 209 KPNVITYSTLINGLCR 224
            P+  +Y +L++ L R
Sbjct: 602 -PDAWSYWSLLDALSR 616



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 2/126 (1%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           T  +   +F+ M++ + + P L S+++L   + +    +  L +F  + S G+ PD+  +
Sbjct: 515 TVGDGVELFESMVS-QGTSPNLHSYSILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVF 573

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N LI   C  GRV     V   + R    PDA ++ SL+  L    R+ EA  L   +K 
Sbjct: 574 NTLIRWLCIAGRVDEALEVFRELERRS-APDAWSYWSLLDALSRCERMEEARLLSFHMKL 632

Query: 206 FGCKPN 211
            GC P 
Sbjct: 633 QGCAPR 638


>gi|255660856|gb|ACU25597.1| pentatricopeptide repeat-containing protein [Bouchea fluminensis]
          Length = 418

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 150/274 (54%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K +++  V   +K +   G  P LY +NIL++ FCK G +    +V   I +    P 
Sbjct: 111 LMKLRYFRLVWGFYKEILECGYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  +  
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  +   PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G++PD +T+  ++D  CK G ++    L + MI   +  
Sbjct: 285 GLCRRGDLGQARDLVEEMIMKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +  T++ L+ G C  GR   A+++   M ++G K
Sbjct: 345 DEVTYTALISGLCREGRAGDAEKMLREMLTVGLK 378



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/256 (37%), Positives = 141/256 (55%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     +    D    L   +++TG+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEM 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L +   P+ V FT+LI G C   ++  A  ++ ++ + G  P++ITY+TLI GLCR
Sbjct: 229 LNEMLDNGLVPNGVTFTTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCR 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L EEM           KP+ +TYTT+IDG CKEG ++   EL  +M  +NI
Sbjct: 289 RGDLGQARDLVEEMIMKG------LKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D VTY +LI G C      +A  +L EM+  G++PD  T+ +IM+E CK G +  AS+
Sbjct: 343 RLDEVTYTALISGLCREGRAGDAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASK 402

Query: 345 LLELMILRGVNPNTST 360
           LL  M   G  P   T
Sbjct: 403 LLREMQRNGPVPGVVT 418



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP L  FN+L     K         +F  +    L P + ++N L+N + ++G +  GF 
Sbjct: 133 PPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  +   PD   ++ LI GLC ES++ EA  +  ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M +          P+ +TY T+I GLC+ G + +A++L  +M  K 
Sbjct: 253 KNGKVDLAMEIYKQMLSQG------FLPDLITYNTLIYGLCRRGDLGQARDLVEEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D      L   M+ + ++ D VT+  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAGDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +M+ FC TG V  A +L   M+  G
Sbjct: 367 KMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNG 411



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P++  ++ L++  C+ G   +A  +F+ +   +       +P+ V++ T+++G  + 
Sbjct: 131 GYPPSLYFFNILMHRFCKEGEMRLAQMVFDAITKWS------LRPSVVSFNTLMNGYIRL 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M    + PDV TY+ LI+G C  +  +EAN +L EM+D G+ P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHATGVQPDVYTYSVLINGLCKESKMDEANEMLNEMLDNGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNGK+D A  + + M+ +G  P+  T++TL+ G C  G +  A++L   M  
Sbjct: 245 TTLIDGHCKNGKVDLAMEIYKQMLSQGFLPDLITYNTLIYGLCRRGDLGQARDLVEEMIM 304

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 305 KGLKPDKITY 314



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVV--CKPNTVTYTTIIDGL-- 263
           +Y T+I+ LC     + A +L   + +  GK      F  +   K   ++   +  GL  
Sbjct: 15  SYCTMIHFLCTHQMLVEAKSLIRVVVSRKGKDSTSAVFAAILETKGTQISDLYVFSGLML 74

Query: 264 --CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GFV  A + F   K   I     T   ++        +        E+++ G  P
Sbjct: 75  AYLESGFVRDAIQCFRLTKKHKIWVPFDTCRKVLEHLMKLRYFRLVWGFYKEILECGYPP 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +    + P+  +F+TLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQMVFDAITKWSLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHATGVQPDVYTY 209



 Score = 42.4 bits (98), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 27/115 (23%), Positives = 46/115 (40%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M+   P   ++  L     K    +    L KR+    +  D  TY  LI+  C+ GR  
Sbjct: 304 MKGLKPDKITYTTLIDGSCKEGDLEITFELRKRMIRENIRLDEVTYTALISGLCREGRAG 363

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
               +L  +L     PD   +T ++   C    +  A+ L  +++  G  P V+T
Sbjct: 364 DAEKMLREMLTVGLKPDNGTYTMIMNEFCKTGDVKTASKLLREMQRNGPVPGVVT 418


>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
 gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
          Length = 721

 Score =  174 bits (442), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 154/303 (50%), Gaps = 11/303 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +    LF+ +   G+ PD+Y Y  LI+ FCK G +      
Sbjct: 220 PDTSTYSKVIGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNW 279

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R    P+ V +T+LI       ++ +A  ++  + + GC PN++TY+ LI+GLC+
Sbjct: 280 FDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCK 339

Query: 225 TGHTIVALNLFEEMANGNGKF-----------GVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            G    A  +++ M   N +            G   +PN  TY  ++DGLCK   V +A+
Sbjct: 340 AGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEAR 399

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   M  +   P+ V Y++LI G C A   +EA  +   M++ G  P+V T++ ++D L
Sbjct: 400 DLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRL 459

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K+ ++D A ++L  M+     PN   ++ ++DG C  G+ + A +L V ME  GC   V
Sbjct: 460 FKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNV 519

Query: 394 FSY 396
            +Y
Sbjct: 520 VTY 522



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 129/239 (53%), Gaps = 6/239 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           F+ ++     P+++TY  L++  CK  +V     +L  +      P+ V + +LI G C 
Sbjct: 367 FRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCK 426

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             ++ EA  +FT +   G  PNV TYS+LI+ L +     +AL +  +M   +      C
Sbjct: 427 AGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENS------C 480

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN V YT +IDGLCK G  D+A +L + M++K  NP+VVTY ++I GF  +    +   
Sbjct: 481 APNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLE 540

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           LL +M  +G  P+ VT+ V+++  C  G +DEA +LLE M       + + +  +++GF
Sbjct: 541 LLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF 599



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 81/310 (26%), Positives = 147/310 (47%), Gaps = 25/310 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K++       +++ + S G  P++ TY  LI+  CK G++     +
Sbjct: 290 PNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQI 349

Query: 165 LGRILR------------------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
             +I++                  +   P+   + +L+ GLC   ++ EA  L   +   
Sbjct: 350 Y-KIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLKSMSVE 408

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC+PN + Y  LI+G C+ G    A  +F  M            PN  TY+++ID L K+
Sbjct: 409 GCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYD------PNVYTYSSLIDRLFKD 462

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +D A ++  +M + +  P+VV Y  +I G C     +EA  L++ M ++G  P+VVT+
Sbjct: 463 KRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTY 522

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D   K+G++++   LL+ M  +G  PN  T+  L++  C TG ++ A +L   M+ 
Sbjct: 523 TAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQ 582

Query: 387 MGCKHTVFSY 396
                 V  Y
Sbjct: 583 TYWPRHVAGY 592



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 147/342 (42%), Gaps = 27/342 (7%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +L  F    CKS    +  ++   E F             P    +  +   L +  
Sbjct: 9   DEFTLGCFAHSLCKSGKWREALSLLEKEEFV------------PDTVLYTKMISGLCEAS 56

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----KMGRVSHGFVVLGRILRSCFTPDA 177
            ++  +    R+ ++   P++ TY IL+ C C    K+GR      ++  I   C+ P  
Sbjct: 57  LFEEAMDFLTRMRASSCLPNVLTYRILL-CGCLNKEKLGRCKRILSMM--ITEGCY-PSP 112

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT---GHTIVALNL 234
             F SL+   C       A  L  K+   GC+P  + Y+ LI G+C +   G  +  L+L
Sbjct: 113 RIFNSLVHAYCRSGDYAYAYKLLKKMVQCGCQPGYVVYNILIGGICSSEEPGKDV--LDL 170

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            E+      + GVV   N V  +     LC  G  +KA  +  +M  K   PD  TY+ +
Sbjct: 171 AEKAYGEMLEAGVVL--NKVNISNFSRCLCGIGKFEKAYNVIREMMSKGFIPDTSTYSKV 228

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I   C A+   +A  L  EM   G+ PDV  +  ++D  CK G +++A    + M   G 
Sbjct: 229 IGYLCNASKVEKAFQLFQEMKRNGIAPDVYVYTTLIDSFCKAGFIEQARNWFDEMERDGC 288

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            PN  T++ L+  +  + +V+ A E++  M S GC   + +Y
Sbjct: 289 APNVVTYTALIHAYLKSRKVSKANEVYEMMLSKGCTPNIVTY 330



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++  +     K+   +  L L ++++S G  P+  TY +LIN  C  G
Sbjct: 509 MMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFVTYRVLINHCCSTG 568

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     +L  + ++ +      +  +I+G   E   + +  L  ++      P    Y 
Sbjct: 569 LLDEAHKLLEEMKQTYWPRHVAGYRKVIEGFNRE--FIASLYLSFEISENDSVPVAPVYR 626

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G   +AL L EE+++    F      N   + T+I+ L      DKA EL+
Sbjct: 627 VLIDNFIKAGRLEIALELNEELSS----FSPFSAANQNIHITLIENLSLAHKADKAFELY 682

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
             M  +   P++     LI G    N W EA  LL
Sbjct: 683 ADMISRGSIPELSILVHLIKGLLRVNRWEEALQLL 717


>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 915

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/356 (31%), Positives = 167/356 (46%), Gaps = 75/356 (21%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   LA+    D +  ++  +    + P++YTYN ++N +CK+G V      +  I+
Sbjct: 186 YNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIV 245

Query: 170 RSCFTPD-----------------------------------AVAFTSLIKGLCAESRIM 194
            +   PD                                    VA+T LI GLC E RI 
Sbjct: 246 EAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPLKGCRRNEVAYTHLIHGLCVERRID 305

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  LF K+K   C P V TY+ LI  LC +     ALNL +EM           KPN  
Sbjct: 306 EAMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKG------IKPNIH 359

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY-------------- 300
           TYT +ID LC +  ++KA+EL  QM +K + P+V+TYN+LI+G+C               
Sbjct: 360 TYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELM 419

Query: 301 --------ANDWNE------------ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                      +NE            A  +L +M+++ V PDVVT+N ++D  C++G  D
Sbjct: 420 ESRNLRPNTRTYNELIKGYCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFD 479

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A RLL LM  RG+ P+  T+++++D  C + RV  A +LF S+E       V  Y
Sbjct: 480 SAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMY 535



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 145/292 (49%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    +  L + + + S  L P+  TYN LI  +CK   V     V
Sbjct: 391 PNVITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGV 449

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L     PD V + SLI G C       A  L + +   G  P+  TY+++I+ LC+
Sbjct: 450 LNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDPWTYTSMIDSLCK 509

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A +LF+ +   +        PN V YT +IDG CK G V++A  +  +M  KN 
Sbjct: 510 SKRVEEACDLFDSLEQKD------VIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNC 563

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +T+N+LIHG C      EA  L  +M+   +QP V T  +++  L K+G  D A R
Sbjct: 564 LPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDTILIHRLLKDGDFDHAYR 623

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + M+  G  P+  T++T +  +C  GR+  A+++   M+  G    +F+Y
Sbjct: 624 RFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTY 675



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 140/276 (50%), Gaps = 11/276 (3%)

Query: 126 VLSLFKRLNSTGLFPDLYT-----YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           VL L +++N    F   Y      YN L+N   + G V     V   +L     P+   +
Sbjct: 162 VLDLCRKMNKDESFELKYKLIIGCYNTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTY 221

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
             ++ G C    + EA    + +   G  P+  TY++LI G C+      A  +F+EM  
Sbjct: 222 NKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFKEMPL 281

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                   C+ N V YT +I GLC E  +D+A +LF++MKD +  P V TY  LI   C 
Sbjct: 282 KG------CRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTVRTYTVLIKALCG 335

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +   +EA  L+ EM ++G++P++ T+ V++D LC   K+++A  LL  M+ +G+ PN  T
Sbjct: 336 SERKSEALNLVKEMEEKGIKPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMPNVIT 395

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ L++G+C  G +  A ++   MES   +    +Y
Sbjct: 396 YNALINGYCKRGMIEDALDVVELMESRNLRPNTRTY 431



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 147/300 (49%), Gaps = 13/300 (4%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           N+RP+     ++N L     K ++    + +  ++    + PD+ TYN LI+  C+ G  
Sbjct: 423 NLRPNT---RTYNELIKGYCK-RNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNF 478

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
              + +L  +      PD   +TS+I  LC   R+ EA  LF  L+     PNV+ Y+ L
Sbjct: 479 DSAYRLLSLMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTAL 538

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+G C+ G    A  + E+M + N      C PN++T+  +I GLC +G + +A  L  +
Sbjct: 539 IDGYCKAGKVNEAHLMLEKMLSKN------CLPNSLTFNALIHGLCTDGKLKEATLLEEK 592

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M   ++ P V T   LIH      D++ A     +M+  G +PD  T+   +   C+ G+
Sbjct: 593 MVKIDLQPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGR 652

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC---KHTVFS 395
           + +A  ++  M   GV+P+  T+S+L+ G+   GR N A  +   M   GC   +HT  S
Sbjct: 653 LQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLS 712



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 150/308 (48%), Gaps = 24/308 (7%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++N R   P   ++  +   L K+K  +    LF  L    + P++  Y  LI+ +CK G
Sbjct: 487 LMNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAG 546

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +V+   ++L ++L     P+++ F +LI GLC + ++ EA  L  K+     +P V T +
Sbjct: 547 KVNEAHLMLEKMLSKNCLPNSLTFNALIHGLCTDGKLKEATLLEEKMVKIDLQPTVSTDT 606

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+ L + G    A   F++M +         KP+  TYTT I   C+EG +  A+++ 
Sbjct: 607 ILIHRLLKDGDFDHAYRRFQQMLSSG------TKPDAHTYTTFIQTYCREGRLQDAEDMV 660

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC-- 334
            +MK+  ++PD+ TY+SLI G+      N A  +L  M D G +P   TF  ++  L   
Sbjct: 661 AKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLEM 720

Query: 335 KNGKM----------------DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           K GK+                D    LLE M+  GV PN  ++  LM G C  G +  A+
Sbjct: 721 KYGKVKGGEPGVCVMSNMMEFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAE 780

Query: 379 ELFVSMES 386
           ++F  M+ 
Sbjct: 781 KVFDHMQQ 788



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 75/311 (24%), Positives = 147/311 (47%), Gaps = 25/311 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +++  +L   L K   +D     F+++ S+G  PD +TY   I  +C+ GR+     +
Sbjct: 600 PTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDM 659

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN---- 220
           + ++  +  +PD   ++SLIKG     R   A  +  ++   GC+P+  T+ +LI     
Sbjct: 660 VAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHLLE 719

Query: 221 -----------GLCRTGHTI---VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
                      G+C   + +   + + L E+M     + GV   PN  +Y  ++ G+C+ 
Sbjct: 720 MKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV----EHGVT--PNAKSYEKLMLGICEI 773

Query: 267 GFVDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           G +  A+++F  M+ K  I+P  + +N+L+   C     NEA  ++ +M+  G  P + +
Sbjct: 774 GNLRVAEKVFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLES 833

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
             +++  L K G+ +  + + + ++  G   +   +  ++DG    G V    ELF  ME
Sbjct: 834 CKILICRLYKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVME 893

Query: 386 SMGCKHTVFSY 396
             GC  +  +Y
Sbjct: 894 KNGCTFSSQTY 904



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 54/129 (41%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD+M       P    FN L  C  K + ++    +   +   G  P L +  ILI   
Sbjct: 782 VFDHMQQKEGISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRL 841

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K G    G  V   +L+  +  D +A+  +I G+  +  +     LF  ++  GC  + 
Sbjct: 842 YKKGEKERGTSVFQNLLQCGYYDDELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSS 901

Query: 213 ITYSTLING 221
            TYS LI G
Sbjct: 902 QTYSLLIEG 910



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 7/177 (3%)

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAF 180
            +D V+ L +++   G+ P+  +Y  L+   C++G +     V   +  +   +P  + F
Sbjct: 740 EFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKVFDHMQQKEGISPSELVF 799

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            +L+   C   +  EAA +   +   G  P + +   LI  L + G      ++F+ +  
Sbjct: 800 NALLSCCCKLEKHNEAAKVVDDMICVGHLPQLESCKILICRLYKKGEKERGTSVFQNLLQ 859

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
             G +      + + +  IIDG+ K+G V+   ELF  M+         TY+ LI G
Sbjct: 860 C-GYYD-----DELAWKIIIDGVGKQGLVEAFYELFNVMEKNGCTFSSQTYSLLIEG 910


>gi|222637127|gb|EEE67259.1| hypothetical protein OsJ_24425 [Oryza sativa Japonica Group]
          Length = 799

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 147/272 (54%), Gaps = 12/272 (4%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           G LA  +++      F  +   GL  D  TY  LIN  C+ G +     VL  +      
Sbjct: 369 GDLAAARNW------FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
            DAV +T LI G C   ++ EA  +  K+      PNV+TY+ L +GLC+ G    A  L
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             EM +   +       N  TY ++I+GLCK G +++A    + M +  + PDV TY ++
Sbjct: 483 LHEMCSKGLEL------NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTI 536

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I   C + + + A+ LL EM+D+G++P +VT+NV+M+  C +G+++   RLLE M+ + +
Sbjct: 537 IGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +PNT+T+++LM  +C+   +    E++  M S
Sbjct: 597 HPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 33/331 (9%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           TA    +A  +FD M     SPP + ++ ++          +T + L   + + GL  + 
Sbjct: 265 TAGRIKDAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNP 320

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
             Y  +I   C  G+VS    V+  ++      DA  FT+++ G C +  +  A   F +
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDE 380

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK--- 250
           ++  G   + +TY+ LINGLCR G    A  + +EM +       V         CK   
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 251 -----------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
                            PN VTYT + DGLCK+G V  A EL  +M  K +  ++ TYNS
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C A +  +A   +I+M + G++PDV T+  I+  LC++ ++D A  LL+ M+ +G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + P   T++ LM+GFC++GRV   K L   M
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++   TP+ V +T+L  GLC +  +  A  L  ++ + G + N+ TY++LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+    +M           KP+  TYTTII  LC+   +D+A  L  +M DK I P +
Sbjct: 512 EQAMRTMIDMDEAG------LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN L++GFC +        LL  M+++ + P+  T+N +M + C    M   + + + 
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKG 625

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ + V PN +T++ L+ G C    +  A      M   G + T  SY
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY 673



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 9/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L   L           LF  + S    PD+ TY I+++ +C +  +     +L  +
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                  + VA+TS+I  LC E ++ +A  +   +   G   +   ++T+++G CR G  
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A N F+EM     K G+    + VTYT +I+GLC+ G + +A+ +  +M+DK ++ D 
Sbjct: 372 AAARNWFDEMQ----KRGLAA--DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDA 425

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY  LI G+C      EA  +  +M+ + V P+VVT+  + D LCK G +  A+ LL  
Sbjct: 426 VTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHE 485

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+  N  T+++L++G C  G +  A    + M+  G K  V++Y
Sbjct: 486 MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-----TYNIL 148
           FD +L   PS P L      +G     +  + VL       +  LF +L      +YNIL
Sbjct: 201 FDLLLLCLPSAPLLLRLRQ-YGISPSPESCNAVLCRLPLDEAVQLFQELPEKNTCSYNIL 259

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  GR+     +   +      PD V +  ++ G C  S +  A  L +++ A G 
Sbjct: 260 LKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGL 316

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + N + Y+++I  LC  G    A+ + E+M       GVV   +   +TT++ G C++G 
Sbjct: 317 ELNPVAYTSVIALLCDEGQVSDAVRVVEDMV----MHGVVL--DAAVFTTVMSGFCRKGD 370

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+  F +M+ + +  D VTY +LI+G C A +  EA  +L EM D+G+  D VT+ V
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM EA  +   M+ + V PN  T++ L DG C  G V  A EL   M S G
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 389 CKHTVFSY 396
            +  +F+Y
Sbjct: 491 LELNIFTY 498



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 122/261 (46%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  R +P  +T +  L   L K         L   + S GL  +++TYN L
Sbjct: 443 EAFLVHNKMVQKRVTPNVVT-YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G +      +  +  +   PD   +T++I  LC    +  A +L  ++   G 
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGI 561

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP ++TY+ L+NG C +G       L E M   N        PNT TY +++   C E  
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN------IHPNTTTYNSLMKQYCIEKN 615

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  + + P+  TYN LI G C A +  EA     EM+++G +    ++N 
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++  L K  K  EA RL E M
Sbjct: 676 LIRLLNKKKKFTEARRLFEKM 696



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 6/191 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  + G L ++K  D   SL + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+   + SL+K  C E  +     ++  + +    PN  TY+ LI G C+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL    EM     +          +Y  +I  L K+    +A+ LF +M+ + +
Sbjct: 648 ARNMKEALYFHSEMIEKGFRL------TASSYNALIRLLNKKKKFTEARRLFEKMRKERL 701

Query: 285 NPDVVTYNSLI 295
             +   YN  I
Sbjct: 702 TAEPDVYNFYI 712


>gi|218199706|gb|EEC82133.1| hypothetical protein OsI_26175 [Oryza sativa Indica Group]
          Length = 799

 Score =  174 bits (441), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 147/272 (54%), Gaps = 12/272 (4%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           G LA  +++      F  +   GL  D  TY  LIN  C+ G +     VL  +      
Sbjct: 369 GDLAAARNW------FDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLD 422

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
            DAV +T LI G C   ++ EA  +  K+      PNV+TY+ L +GLC+ G    A  L
Sbjct: 423 VDAVTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANEL 482

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             EM +   +       N  TY ++I+GLCK G +++A    + M +  + PDV TY ++
Sbjct: 483 LHEMCSKGLEL------NIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTI 536

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I   C + + + A+ LL EM+D+G++P +VT+NV+M+  C +G+++   RLLE M+ + +
Sbjct: 537 IGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKNI 596

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +PNT+T+++LM  +C+   +    E++  M S
Sbjct: 597 HPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLS 628



 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/331 (30%), Positives = 162/331 (48%), Gaps = 33/331 (9%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           TA    +A  +FD M     SPP + ++ ++          +T + L   + + GL  + 
Sbjct: 265 TAGRIKDAHQLFDEM----ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGLELNP 320

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
             Y  +I   C  G+VS    V+  ++      DA  FT+++ G C +  +  A   F +
Sbjct: 321 VAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDLAAARNWFDE 380

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK--- 250
           ++  G   + +TY+ LINGLCR G    A  + +EM +       V         CK   
Sbjct: 381 MQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGK 440

Query: 251 -----------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
                            PN VTYT + DGLCK+G V  A EL  +M  K +  ++ TYNS
Sbjct: 441 MTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNS 500

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C A +  +A   +I+M + G++PDV T+  I+  LC++ ++D A  LL+ M+ +G
Sbjct: 501 LINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKG 560

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + P   T++ LM+GFC++GRV   K L   M
Sbjct: 561 IKPTIVTYNVLMNGFCMSGRVEGGKRLLEWM 591



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 148/288 (51%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  L   L +         + + +   GL  D  TY +LI+ +CK+G+++  F+V  ++
Sbjct: 392 TYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTVLIDGYCKVGKMTEAFLVHNKM 451

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++   TP+ V +T+L  GLC +  +  A  L  ++ + G + N+ TY++LINGLC+ G+ 
Sbjct: 452 VQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSLINGLCKAGNL 511

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+    +M           KP+  TYTTII  LC+   +D+A  L  +M DK I P +
Sbjct: 512 EQAMRTMIDMDEAG------LKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTI 565

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN L++GFC +        LL  M+++ + P+  T+N +M + C    M   + + + 
Sbjct: 566 VTYNVLMNGFCMSGRVEGGKRLLEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKG 625

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ + V PN +T++ L+ G C    +  A      M   G + T  SY
Sbjct: 626 MLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSY 673



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 149/288 (51%), Gaps = 9/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L   L           LF  + S    PD+ TY I+++ +C +  +     +L  +
Sbjct: 255 SYNILLKALCTAGRIKDAHQLFDEMASP---PDVVTYGIMVHGYCTLSELETAIKLLSEM 311

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                  + VA+TS+I  LC E ++ +A  +   +   G   +   ++T+++G CR G  
Sbjct: 312 AARGLELNPVAYTSVIALLCDEGQVSDAVRVVEDMVMHGVVLDAAVFTTVMSGFCRKGDL 371

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A N F+EM     K G+    + VTYT +I+GLC+ G + +A+ +  +M+DK ++ D 
Sbjct: 372 AAARNWFDEMQ----KRGLAA--DGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDA 425

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY  LI G+C      EA  +  +M+ + V P+VVT+  + D LCK G +  A+ LL  
Sbjct: 426 VTYTVLIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHE 485

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+  N  T+++L++G C  G +  A    + M+  G K  V++Y
Sbjct: 486 MCSKGLELNIFTYNSLINGLCKAGNLEQAMRTMIDMDEAGLKPDVYTY 533



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-----TYNIL 148
           FD +L   PS P L      +G     +  + VL       +  LF +L      +YNIL
Sbjct: 201 FDLLLLCLPSAPLLLRLRQ-YGISPSPESCNAVLCRLPLDEAVQLFQELPEKNTCSYNIL 259

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  GR+     +   +      PD V +  ++ G C  S +  A  L +++ A G 
Sbjct: 260 LKALCTAGRIKDAHQLFDEM---ASPPDVVTYGIMVHGYCTLSELETAIKLLSEMAARGL 316

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + N + Y+++I  LC  G    A+ + E+M       GVV   +   +TT++ G C++G 
Sbjct: 317 ELNPVAYTSVIALLCDEGQVSDAVRVVEDMV----MHGVVL--DAAVFTTVMSGFCRKGD 370

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+  F +M+ + +  D VTY +LI+G C A +  EA  +L EM D+G+  D VT+ V
Sbjct: 371 LAAARNWFDEMQKRGLAADGVTYTALINGLCRAGELKEAERVLQEMEDKGLDVDAVTYTV 430

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM EA  +   M+ + V PN  T++ L DG C  G V  A EL   M S G
Sbjct: 431 LIDGYCKVGKMTEAFLVHNKMVQKRVTPNVVTYTALSDGLCKQGDVCAANELLHEMCSKG 490

Query: 389 CKHTVFSY 396
            +  +F+Y
Sbjct: 491 LELNIFTY 498



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/261 (29%), Positives = 122/261 (46%), Gaps = 7/261 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  R +P  +T +  L   L K         L   + S GL  +++TYN L
Sbjct: 443 EAFLVHNKMVQKRVTPNVVT-YTALSDGLCKQGDVCAANELLHEMCSKGLELNIFTYNSL 501

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G +      +  +  +   PD   +T++I  LC    +  A +L  ++   G 
Sbjct: 502 INGLCKAGNLEQAMRTMIDMDEAGLKPDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGI 561

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP ++TY+ L+NG C +G       L E M   N        PNT TY +++   C E  
Sbjct: 562 KPTIVTYNVLMNGFCMSGRVEGGKRLLEWMLEKN------IHPNTTTYNSLMKQYCIEKN 615

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M  + + P+  TYN LI G C A +  EA     EM+++G +    ++N 
Sbjct: 616 MKSTTEIYKGMLSQEVVPNENTYNILIKGHCKARNMKEALYFHSEMIEKGFRLTASSYNA 675

Query: 329 IMDELCKNGKMDEASRLLELM 349
           ++  L K  K  EA RL E M
Sbjct: 676 LIRLLNKKKKFTEARRLFEKM 696



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 6/191 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  + G L ++K  D   SL + +   G+ P + TYN+L+N FC  GRV  G  +
Sbjct: 528 PDVYTYTTIIGALCQSKELDRAHSLLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKRL 587

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+   + SL+K  C E  +     ++  + +    PN  TY+ LI G C+
Sbjct: 588 LEWMLEKNIHPNTTTYNSLMKQYCIEKNMKSTTEIYKGMLSQEVVPNENTYNILIKGHCK 647

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL    EM     +          +Y  +I  L K+    +A+ LF +M+   +
Sbjct: 648 ARNMKEALYFHSEMIEKGFRL------TASSYNALIRLLNKKKKFTEARRLFEKMRKDRL 701

Query: 285 NPDVVTYNSLI 295
             +   YN  I
Sbjct: 702 TAEPDVYNFYI 712


>gi|410109875|gb|AFV61017.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           herrerae]
          Length = 395

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 100/291 (34%), Positives = 155/291 (53%), Gaps = 6/291 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           PL     +   L K K++  V   +K +   G    LY +NIL++ FCK G +     V 
Sbjct: 87  PLDXCRKVLEHLMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGDIRLAQSVF 146

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             I +    P  V+F +L+ G      + E   L   + A G +P+V TYS LINGLC+ 
Sbjct: 147 DAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKNAMHASGVQPDVYTYSVLINGLCKE 206

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                A  LF+EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++
Sbjct: 207 SKMDDANELFDEMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 260

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD++TYN+L +G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G M+ A   
Sbjct: 261 PDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDMETAFEH 320

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + MI   +  +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 321 QKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXGTY 371



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 149/282 (52%), Gaps = 6/282 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 179

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 180 LKNAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 239

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+  GLCK+G + +A +L  +M  K 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLTYGLCKKGDLKQAHDLIDEMSMKG 293

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 294 LKPDKITYTTLIDGCCKEGDMETAFEHQKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 353

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++L  M+  G+ PN  T++ +++ FC  G V    +L   M+
Sbjct: 354 KMLREMLSVGLKPNXGTYTMIINEFCKKGDVWTGSKLLKEMQ 395


>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
 gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
          Length = 698

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  +   LAK K     ++L +++ + G  P + TYN L+N  CKMGR+     +L 
Sbjct: 259 IHTYTAIVNWLAKNKKIQEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLR 318

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I+ +  TPD V +TSLI GL  E R  EA  LF ++ + G   + + Y+ LI GL +TG
Sbjct: 319 KIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTG 378

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A ++++ M +        C P+ VT +T+IDGL K G +  A  +F  M+ + + P
Sbjct: 379 KIPQASSVYKTMTSHG------CVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAP 432

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + V Y++LIHG C A   + A  +L +M      PD +T+N+++D LCK+G ++ A    
Sbjct: 433 NEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFF 492

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           + M+  G  P+  T++ L+ G C  G  + A  +   M S
Sbjct: 493 DEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS 532



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 146/296 (49%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P    +F++L   L K        SL +   + G   D++TY  ++N   K  ++  
Sbjct: 218 RSMPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQE 277

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++ +I  +  TP    + +L+ GLC   R+ EA  L  K+   GC P+V+TY++LI+
Sbjct: 278 AVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLID 337

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GL +   +  A  LF+EMA+       VC      YT +I GL + G + +A  ++  M 
Sbjct: 338 GLGKEKRSFEAYKLFKEMASRGLALDTVC------YTALIRGLLQTGKIPQASSVYKTMT 391

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                PDVVT +++I G   A     A  +   M  +G+ P+ V ++ ++  LCK  KMD
Sbjct: 392 SHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMD 451

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  +L  M      P+T T++ L+DG C +G V  A+  F  M   GCK  V++Y
Sbjct: 452 CALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTY 507



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 153/313 (48%), Gaps = 7/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A  P EAF +   M       P L + NL+   L K+      +  F+ +  + +     
Sbjct: 167 AREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAVRRS-MPVSAA 225

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T++ILIN   K G +     +      +  T D   +T+++  L    +I EA AL  K+
Sbjct: 226 TFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLAKNKKIQEAVALMEKI 285

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
            A GC P + TY+ L+NGLC+ G    A++L  ++ + NG     C P+ VTYT++IDGL
Sbjct: 286 TANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD-NG-----CTPDVVTYTSLIDGL 339

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            KE    +A +LF +M  + +  D V Y +LI G        +A+ +   M   G  PDV
Sbjct: 340 GKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDV 399

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT + ++D L K G++  A R+ + M  RG+ PN   +S L+ G C   +++ A E+   
Sbjct: 400 VTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQ 459

Query: 384 MESMGCKHTVFSY 396
           M+   C     +Y
Sbjct: 460 MKKAFCTPDTITY 472



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 143/286 (50%), Gaps = 10/286 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + ++N+L       +  +   ++ + +    G+ P L T+N++++  CK G+V     
Sbjct: 152 PDVETWNVLITGYCLAREPEEAFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMD 211

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
               + RS     A  F+ LI GL     +++A +L  +    GC  ++ TY+ ++N L 
Sbjct: 212 HFEAVRRS-MPVSAATFSILINGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLA 270

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           +      A+ L E++ ANG       C P   TY  +++GLCK G +++A +L  ++ D 
Sbjct: 271 KNKKIQEAVALMEKITANG-------CTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDN 323

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              PDVVTY SLI G        EA  L  EM  +G+  D V +  ++  L + GK+ +A
Sbjct: 324 GCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQA 383

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           S + + M   G  P+  T ST++DG    GR+  A  +F SME+ G
Sbjct: 384 SSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARG 429



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 144/284 (50%), Gaps = 14/284 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + + +   L+K       + +FK + + GL P+   Y+ LI+  CK  ++     +
Sbjct: 397 PDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEM 456

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ ++  TPD + +  LI GLC    +  A A F ++   GCKP+V TY+ LI+GLC+
Sbjct: 457 LAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCK 516

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+T  A  + ++M++           +   Y++++DGLCK G ++    LF +M+   +
Sbjct: 517 AGNTDAACGVLDDMSS-----------SRFVYSSLVDGLCKSGKLEGGCMLFHEMERSGV 565

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  T   LI   C AN  +EA  L   +  +G+ P    +N I+  L K+GK++E   
Sbjct: 566 -ANSQTRTRLIFHLCKANRVDEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQA 623

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + + M  R   P+  T++ L++G     R++ A   ++ M   G
Sbjct: 624 VYQEMT-RWWKPDRVTYNALLNGMIGANRMDRAHYYYLEMTGRG 666



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 119/277 (42%), Gaps = 15/277 (5%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  IF  M   R   P    ++ L   L K +  D  L +  ++      PD  TYNILI
Sbjct: 418 AVRIFKSM-EARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILI 476

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G V         +L +   PD   +  LI GLC       A  +   + +    
Sbjct: 477 DGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAACGVLDDMSS---- 532

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            +   YS+L++GLC++G       LF EM     + GV    N+ T T +I  LCK   V
Sbjct: 533 -SRFVYSSLVDGLCKSGKLEGGCMLFHEME----RSGVA---NSQTRTRLIFHLCKANRV 584

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A  LF  ++ + + P    YNS+I     +   NE   +  EM  +  +PD VT+N +
Sbjct: 585 DEAVSLFNAIRKEGM-PHPYAYNSIISALIKSGKVNEGQAVYQEMT-RWWKPDRVTYNAL 642

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++ +    +MD A      M  RG  P  S    L D
Sbjct: 643 LNGMIGANRMDRAHYYYLEMTGRGYVPPVSILHKLAD 679


>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Cucumis sativus]
          Length = 857

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L +  ++     ++ R+   G++PD+YT+ I
Sbjct: 93  QEAVNVFERM-DFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +  FC  GR +    +L  +       +AV++ ++I G   E+  +EA  LF ++   G
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++T++ LI+ LC+ G+   +  LF ++     K GV   PN  T+   I GLC++G
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVM----KRGVC--PNLFTFNIFIQGLCRKG 265

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L   +  + + PDV++YN+LI GFC  +   EA C L +M++ GV+P+  T+N
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I++  CK G M  A ++L   + +G  P+  T+S+L++G C  G +N A  +F      
Sbjct: 326 TIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEK 385

Query: 388 GCKHTVFSY 396
           G KH++  Y
Sbjct: 386 GFKHSIILY 394



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 167/322 (51%), Gaps = 35/322 (10%)

Query: 105 PPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + S+N L+ G    +K  +    L K +NS G+ P+ +TYN +IN FCK G + +   
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNS-GVEPNEFTYNTIINGFCKAGMMQNADK 342

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L   +   F PD   ++SLI GLC +  +  A A+F +    G K ++I Y+TL+ GL 
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLS 402

Query: 224 RTGHTIVALNLFEEM---------------------------ANG--NGKFGVVCKPNTV 254
           + G  + AL L ++M                           ANG  N      C P+  
Sbjct: 403 KQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIF 462

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+ T+IDG CK+  +DKA E+   M    I PDV+TYN+L++G C A   +        M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +++G  P+++T+N++++  CK+ K+ EA  L + M  RG+ P+  T  TL+ G C  G +
Sbjct: 523 LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGEL 582

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
           + A ELFV++E    K   FSY
Sbjct: 583 DKAYELFVTIE----KEYKFSY 600



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 82/280 (29%), Positives = 138/280 (49%), Gaps = 7/280 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L+K       L L K +   G  PD++TYN+++N  CKMG +S    +L   +
Sbjct: 394 YNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAI 453

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   F +LI G C +  + +A  +   + + G  P+VITY+TL+NGLC+     
Sbjct: 454 AKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLD 513

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
             ++ F+ M          C PN +TY  +I+  CK+  V +A ELF +MK + + PD+V
Sbjct: 514 NVVDTFKAMLEKG------CTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIV 567

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           T  +LI G C   + ++A  L + +  +         FN++++  C+   +  A +L   
Sbjct: 568 TLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIFNIMINAFCEKLNVSMAEKLFHK 627

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           M      P+  T+  ++D +C TG ++ A    +   S G
Sbjct: 628 MGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENISKG 667



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 6/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G+V     V  R+      P   ++ +++  L       +A  ++ ++K  G  P+
Sbjct: 86  YGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V T++  +   C TG    AL L   M  G G     C+ N V+Y  +I G  KE    +
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMP-GQG-----CEFNAVSYCAVISGFYKENCQIE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  LF +M  + I PD++T+N LIH  C   +  E+  L  ++M +GV P++ TFN+ + 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G +DEA+RLLE ++  G+ P+  +++TL+ GFC   ++  A+     M + G + 
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 392 TVFSY 396
             F+Y
Sbjct: 320 NEFTY 324



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 126/252 (50%), Gaps = 5/252 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L     K ++ D  + +   + S G+ PD+ TYN L+N  CK  ++ +    
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L    TP+ + +  LI+  C + ++ EA  LF ++K  G  P+++T  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF  +     KF      +T  +  +I+  C++  V  A++LF +M   + 
Sbjct: 579 NGELDKAYELFVTIEK-EYKFSY----STAIFNIMINAFCEKLNVSMAEKLFHKMGGSDC 633

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  +I  +C   + + A+  L+E + +G+ P   T   +++ LC   ++ EA  
Sbjct: 634 APDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVV 693

Query: 345 LLELMILRGVNP 356
           ++ LM+  G+ P
Sbjct: 694 IINLMVQNGIVP 705



 Score =  108 bits (271), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I D ML+   +P  +T +N L   L K +  D V+  FK +   G  P++ TYNI
Sbjct: 478 DKAIEILDTMLSHGITPDVIT-YNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           LI  FCK  +VS    +   +     TPD V   +LI GLC+   + +A  LF  + K +
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY 596

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
               +   ++ +IN  C   +  +A  LF +M       G  C P+  TY  +ID  CK 
Sbjct: 597 KFSYSTAIFNIMINAFCEKLNVSMAEKLFHKMG------GSDCAPDNYTYRVMIDSYCKT 650

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A    L+   K + P   T   +++  C  +  +EA  ++  M+  G+ P+ V  
Sbjct: 651 GNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV-- 708

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           N I +    + K   A +++   +L+  +    ++  L DG 
Sbjct: 709 NSIFE---ADKKEVAAPKIVVEYLLKKSHITYYSYELLYDGI 747



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 6/196 (3%)

Query: 194 MEAAALFTKLKAF-GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + A  +F ++K   G K  + TY  +I  L   G      ++  EM     +  V  K  
Sbjct: 21  LNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEM-----RKNVDSKML 75

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y  I+    ++G V +A  +F +M   +  P V +YN++++       +++A+ + +
Sbjct: 76  EGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYM 135

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M D G+ PDV T  + M   C  G+   A RLL  M  +G   N  ++  ++ GF    
Sbjct: 136 RMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKEN 195

Query: 373 RVNHAKELFVSMESMG 388
               A  LF  M   G
Sbjct: 196 CQIEAYHLFDEMLKQG 211


>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g74580-like [Cucumis
           sativus]
          Length = 877

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 168/309 (54%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L +  ++     ++ R+   G++PD+YT+ I
Sbjct: 93  QEAVNVFERM-DFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPDVYTHTI 151

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +  FC  GR +    +L  +       +AV++ ++I G   E+  +EA  LF ++   G
Sbjct: 152 RMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYHLFDEMLKQG 211

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++T++ LI+ LC+ G+   +  LF ++     K GV   PN  T+   I GLC++G
Sbjct: 212 ICPDILTFNKLIHVLCKKGNVQESEKLFSKVM----KRGVC--PNLFTFNIFIQGLCRKG 265

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L   +  + + PDV++YN+LI GFC  +   EA C L +M++ GV+P+  T+N
Sbjct: 266 AIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYN 325

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I++  CK G M  A ++L   + +G  P+  T+S+L++G C  G +N A  +F      
Sbjct: 326 TIINGFCKAGMMQNADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEK 385

Query: 388 GCKHTVFSY 396
           G KH++  Y
Sbjct: 386 GFKHSIILY 394



 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 107/322 (33%), Positives = 167/322 (51%), Gaps = 35/322 (10%)

Query: 105 PPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + S+N L+ G    +K  +    L K +NS G+ P+ +TYN +IN FCK G + +   
Sbjct: 284 PDVISYNTLICGFCKHSKLVEAECYLHKMVNS-GVEPNEFTYNTIINGFCKAGMMQNADK 342

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L   +   F PD   ++SLI GLC +  +  A A+F +    G K ++I Y+TL+ GL 
Sbjct: 343 ILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLS 402

Query: 224 RTGHTIVALNLFEEM---------------------------ANG--NGKFGVVCKPNTV 254
           + G  + AL L ++M                           ANG  N      C P+  
Sbjct: 403 KQGLVLQALQLMKDMMEHGCSPDIWTYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIF 462

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+ T+IDG CK+  +DKA E+   M    I PDV+TYN+L++G C A   +        M
Sbjct: 463 TFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAM 522

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +++G  P+++T+N++++  CK+ K+ EA  L + M  RG+ P+  T  TL+ G C  G +
Sbjct: 523 LEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGEL 582

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
           + A ELFV++E    K   FSY
Sbjct: 583 DKAYELFVTIE----KEYKFSY 600



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 144/302 (47%), Gaps = 8/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F Y    +     +  +N L   L+K       L L K +   G  PD++TYN+
Sbjct: 373 NRAMAVF-YEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIWTYNL 431

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  CKMG +S    +L   +     PD   F +LI G C +  + +A  +   + + G
Sbjct: 432 VVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHG 491

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+VITY+TL+NGLC+       ++ F+ M          C PN +TY  +I+  CK+ 
Sbjct: 492 ITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKG------CTPNIITYNILIESFCKDR 545

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVTF 326
            V +A ELF +MK + + PD+VT  +LI G C   + ++A  L + +  +         F
Sbjct: 546 KVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEYKFSYSTAIF 605

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N++++  C    +  A +L   M      P+  T+  ++D +C TG ++ A    +   S
Sbjct: 606 NIMINAFCXKLNVSMAEKLFHKMGGSDCAPDNYTYRVMIDSYCKTGNIDLAHTFLLENIS 665

Query: 387 MG 388
            G
Sbjct: 666 KG 667



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 126/245 (51%), Gaps = 6/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G+V     V  R+      P   ++ +++  L       +A  ++ ++K  G  P+
Sbjct: 86  YGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYMRMKDIGIYPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V T++  +   C TG    AL L   M  G G     C+ N V+Y  +I G  KE    +
Sbjct: 146 VYTHTIRMKSFCITGRPTAALRLLNNMP-GQG-----CEFNAVSYCAVISGFYKENCQIE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  LF +M  + I PD++T+N LIH  C   +  E+  L  ++M +GV P++ TFN+ + 
Sbjct: 200 AYHLFDEMLKQGICPDILTFNKLIHVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQ 259

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G +DEA+RLLE ++  G+ P+  +++TL+ GFC   ++  A+     M + G + 
Sbjct: 260 GLCRKGAIDEAARLLESIVSEGLTPDVISYNTLICGFCKHSKLVEAECYLHKMVNSGVEP 319

Query: 392 TVFSY 396
             F+Y
Sbjct: 320 NEFTY 324



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 71/252 (28%), Positives = 125/252 (49%), Gaps = 5/252 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L     K ++ D  + +   + S G+ PD+ TYN L+N  CK  ++ +    
Sbjct: 459 PDIFTFNTLIDGYCKQRNMDKAIEILDTMLSHGITPDVITYNTLLNGLCKARKLDNVVDT 518

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L    TP+ + +  LI+  C + ++ EA  LF ++K  G  P+++T  TLI GLC 
Sbjct: 519 FKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCS 578

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF  +     KF      +T  +  +I+  C +  V  A++LF +M   + 
Sbjct: 579 NGELDKAYELFVTIEK-EYKFSY----STAIFNIMINAFCXKLNVSMAEKLFHKMGGSDC 633

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  +I  +C   + + A+  L+E + +G+ P   T   +++ LC   ++ EA  
Sbjct: 634 APDNYTYRVMIDSYCKTGNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVV 693

Query: 345 LLELMILRGVNP 356
           ++ LM+  G+ P
Sbjct: 694 IINLMVQNGIVP 705



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 131/282 (46%), Gaps = 13/282 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I D ML+   +P  +T +N L   L K +  D V+  FK +   G  P++ TYNI
Sbjct: 478 DKAIEILDTMLSHGITPDVIT-YNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNI 536

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           LI  FCK  +VS    +   +     TPD V   +LI GLC+   + +A  LF  + K +
Sbjct: 537 LIESFCKDRKVSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKEY 596

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
               +   ++ +IN  C   +  +A  LF +M       G  C P+  TY  +ID  CK 
Sbjct: 597 KFSYSTAIFNIMINAFCXKLNVSMAEKLFHKMG------GSDCAPDNYTYRVMIDSYCKT 650

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A    L+   K + P   T   +++  C  +  +EA  ++  M+  G+ P+ V  
Sbjct: 651 GNIDLAHTFLLENISKGLVPSFTTCGKVLNCLCVTHRLSEAVVIINLMVQNGIVPEEV-- 708

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           N I +    + K   A +++   +L+  +    ++  L DG 
Sbjct: 709 NSIFE---ADKKEVAAPKIVVEYLLKKSHITYYSYELLYDGI 747



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 85/196 (43%), Gaps = 6/196 (3%)

Query: 194 MEAAALFTKLKAF-GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + A  +F ++K   G K  + TY  +I  L   G      ++  EM     +  V  K  
Sbjct: 21  LNALKMFNQVKTEDGFKHTLETYKCMIEKLGLHGKFEAMEDVLAEM-----RKNVDSKML 75

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y  I+    ++G V +A  +F +M   +  P V +YN++++       +++A+ + +
Sbjct: 76  EGVYIGIMRDYGRKGKVQEAVNVFERMDFYDCEPSVQSYNAIMNILVEYGYFSQAHKVYM 135

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M D G+ PDV T  + M   C  G+   A RLL  M  +G   N  ++  ++ GF    
Sbjct: 136 RMKDIGIYPDVYTHTIRMKSFCITGRPTAALRLLNNMPGQGCEFNAVSYCAVISGFYKEN 195

Query: 373 RVNHAKELFVSMESMG 388
               A  LF  M   G
Sbjct: 196 CQIEAYHLFDEMLKQG 211


>gi|357500061|ref|XP_003620319.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495334|gb|AES76537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 496

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 143/251 (56%), Gaps = 12/251 (4%)

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FCK G+V     V   +++  F P+ V ++SL+ G C    + +A ++F  +   G 
Sbjct: 226 VSTFCKEGKVKEAKNVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGV 285

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCK 265
            P++ +Y+ LING C+   T  A+NLFEEM          C+   PN VTY ++IDGLCK
Sbjct: 286 NPDIQSYNILINGFCKIKMTDAAMNLFEEMH---------CRKIIPNVVTYNSLIDGLCK 336

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +  A +L  +M D+   PD++TY+SL+   C  +  ++A  LL ++ DQG+QP++ T
Sbjct: 337 SGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYT 396

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           + ++++ LCK G+ ++A  + E ++++G N N +T++ ++  FC  G    A  +   ME
Sbjct: 397 YTILINGLCKGGRPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKME 456

Query: 386 SMGCKHTVFSY 396
             GC     +Y
Sbjct: 457 ENGCIPNAVTY 467



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/267 (32%), Positives = 137/267 (51%), Gaps = 9/267 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EA  +F  M+     P  +T  +L+ G CL   K  +   S+F  +   G+ PD+ +YNI
Sbjct: 237 EAKNVFAAMMKKGFKPNVVTYSSLMDGYCL--VKEVNKAKSIFNNMAQGGVNPDIQSYNI 294

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FCK+        +   +      P+ V + SLI GLC   +I  A  L  ++   G
Sbjct: 295 LINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHDRG 354

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITYS+L++ LC+      A+ L  ++ +         +PN  TYT +I+GLCK G
Sbjct: 355 QPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQG------LQPNMYTYTILINGLCKGG 408

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             + A+ +F  +  K  N +V TY  +IH FC    + EA  +L +M + G  P+ VT+ 
Sbjct: 409 RPEDAQNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYE 468

Query: 328 VIMDELCKNGKMDEASRLLELMILRGV 354
           +I+  L    + D+A +LL  MI RG+
Sbjct: 469 IIIRSLFDKDENDKAEKLLLEMITRGL 495



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 74/261 (28%), Positives = 133/261 (50%), Gaps = 6/261 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F  +   G  P++ TY+ L++ +C +  V+    +   + +    PD  ++  LI G 
Sbjct: 240 NVFAAMMKKGFKPNVVTYSSLMDGYCLVKEVNKAKSIFNNMAQGGVNPDIQSYNILINGF 299

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C       A  LF ++      PNV+TY++LI+GLC++G    AL L +EM +  G+   
Sbjct: 300 CKIKMTDAAMNLFEEMHCRKIIPNVVTYNSLIDGLCKSGKISYALKLVDEMHD-RGQ--- 355

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+ +TY++++D LCK    DKA  L  ++KD+ + P++ TY  LI+G C      +A
Sbjct: 356 --PPDIITYSSLLDALCKNHPGDKAIALLTKLKDQGLQPNMYTYTILINGLCKGGRPEDA 413

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +  +++ +G   +V T+ V++   C NG   EA  +L  M   G  PN  T+  ++  
Sbjct: 414 QNIFEDLLVKGYNINVNTYTVMIHVFCNNGMFGEALAMLSKMEENGCIPNAVTYEIIIRS 473

Query: 368 FCLTGRVNHAKELFVSMESMG 388
                  + A++L + M + G
Sbjct: 474 LFDKDENDKAEKLLLEMITRG 494



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 7/232 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF+ M     +P  + S+N+L     K K  D  ++LF+ ++   + P++ TYN 
Sbjct: 271 NKAKSIFNNMAQGGVNPD-IQSYNILINGFCKIKMTDAAMNLFEEMHCRKIIPNVVTYNS 329

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G++S+   ++  +      PD + ++SL+  LC      +A AL TKLK  G
Sbjct: 330 LIDGLCKSGKISYALKLVDEMHDRGQPPDIITYSSLLDALCKNHPGDKAIALLTKLKDQG 389

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN+ TY+ LINGLC+ G    A N+FE++             N  TYT +I   C  G
Sbjct: 390 LQPNMYTYTILINGLCKGGRPEDAQNIFEDLLVKGYNI------NVNTYTVMIHVFCNNG 443

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
              +A  +  +M++    P+ VTY  +I      ++ ++A  LL+EM+ +G+
Sbjct: 444 MFGEALAMLSKMEENGCIPNAVTYEIIIRSLFDKDENDKAEKLLLEMITRGL 495


>gi|255660804|gb|ACU25571.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 418

 Score =  174 bits (441), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 154/291 (52%), Gaps = 6/291 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P  +   +   L K K++  V   ++     G    LY +NIL++ F K G +     V 
Sbjct: 100 PFDTXRKVIEHLMKLKYFKLVWGFYEESLEYGYPASLYFFNILMHSFVKEGEIRLAQSVF 159

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             I +    P  V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+ 
Sbjct: 160 DAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKE 219

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                A  LF+EM N     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++
Sbjct: 220 SKMEDANELFDEMLNN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 273

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD++TYN+LI+G C   D  +A  L  EM  +G++PD +T+  ++D  CK G ++ A   
Sbjct: 274 PDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEY 333

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + MI   +  +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 334 RKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 HLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFDEMLNNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C       A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|410109867|gb|AFV61013.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia salsoloides]
          Length = 410

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 103 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPS 162

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 163 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFD 222

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++ D++TYN+LI+
Sbjct: 223 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIY 276

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 277 GLCKKGDLKQAQNLIDEMRMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL 336

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++TL+ G C  GR   A+++   M S+G K    +Y
Sbjct: 337 DDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 376



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 125 PASLYFFNILMHRFCKEGEIRVARSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 184

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES+I  A  LF ++   G  PN +T++TLI+G C
Sbjct: 185 LKSAMHASGVEPDVYTYSVLINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHC 244

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +         + +TY T+I GLCK+G + +A+ L  +M+ K 
Sbjct: 245 KNGRVDLAMEIYKQMLSQS------LSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKG 298

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 299 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAE 358

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G
Sbjct: 359 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 403



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 145/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     +    D    L   ++++G+ PD+YTY++
Sbjct: 147 ARSVFDAITKWGLRPS---VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVEPDVYTYSV 203

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 204 LINGLCKESKIDGANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 263

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              ++ITY+TLI GLC+ G    A NL +EM           KP+ +TYTT+IDG CKEG
Sbjct: 264 LSADLITYNTLIYGLCKKGDLKQAQNLIDEMRMKG------LKPDKITYTTLIDGCCKEG 317

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++PD  T+ 
Sbjct: 318 DLETAFEHRKRMIQENIRLDDVVYTTLISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYT 377

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 378 MIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVT 410


>gi|224134148|ref|XP_002321748.1| predicted protein [Populus trichocarpa]
 gi|222868744|gb|EEF05875.1| predicted protein [Populus trichocarpa]
          Length = 1041

 Score =  174 bits (441), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 95  DYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           D +  M+ S   P   +  ++   L +    +    +F+ + S G+ P+   Y  LI   
Sbjct: 432 DLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGH 491

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            + GR      +L  + +    PD + + S+I GLC   ++ EA     ++   G KPNV
Sbjct: 492 VQEGRFQEAVRILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNV 551

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  LI+G C++G   VA   F+EM       G    PN V  T +IDG CKEG   +A
Sbjct: 552 YTYGALIHGYCKSGEMQVADRYFKEM------LGCGIAPNDVVCTALIDGYCKEGSTTEA 605

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F  M  ++++PDV TY++LIHG         A  LL E +++G+ PDV T+N I+  
Sbjct: 606 TSIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISG 665

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            CK G + +A +L E M  +G++PN  T++ L++G C  G +  A+ELF  +   G  H 
Sbjct: 666 FCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKGLAHN 725

Query: 393 VFSY 396
             +Y
Sbjct: 726 AVTY 729



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 153/310 (49%), Gaps = 7/310 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G +      EA  I   M + +   P +  +N +   L K++  +        +   GL
Sbjct: 489 KGHVQEGRFQEAVRILKVM-DKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGL 547

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++YTY  LI+ +CK G +         +L     P+ V  T+LI G C E    EA +
Sbjct: 548 KPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGIAPNDVVCTALIDGYCKEGSTTEATS 607

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F  +      P+V TYS LI+GL R G    A+ L  E        G+V  P+  TY +
Sbjct: 608 IFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEK----GLV--PDVFTYNS 661

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           II G CK+G + KA +L   M  K I+P+++TYN+LI+G C A +   A  L   +  +G
Sbjct: 662 IISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFDGIPGKG 721

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +  + VT+  I+D  CK+G + +A RL + M L+GV P++  +S L+DG    G    A 
Sbjct: 722 LAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKAL 781

Query: 379 ELFVSMESMG 388
            LF+     G
Sbjct: 782 SLFLESVQKG 791



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 150/320 (46%), Gaps = 43/320 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N++ G L +    D    L K ++  GL  D++TY+ILI+ F K  R +   ++
Sbjct: 269 PSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLM 328

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P  VA+T+LI G   +    EA  +  ++ A G K N+ TY+ L+ G+C+
Sbjct: 329 LEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCK 388

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT-------------------------- 258
            G    A  L  EM        V  KP+T TY                            
Sbjct: 389 FGDMEKADALLNEM------IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMKKSNL 442

Query: 259 ---------IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
                    II+GLC+ G ++ A  +F  M    + P+ V Y +LI G      + EA  
Sbjct: 443 VPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAVR 502

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +L  M  +GVQPDV+ +N ++  LCK+ KM+EA   L  MI RG+ PN  T+  L+ G+C
Sbjct: 503 ILKVMDKKGVQPDVLCYNSVIIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYC 562

Query: 370 LTGRVNHAKELFVSMESMGC 389
            +G +  A   F  M  +GC
Sbjct: 563 KSGEMQVADRYFKEM--LGC 580



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/269 (34%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           S+F+ +    + PD+ TY+ LI+   + G++     +L   L     PD   + S+I G 
Sbjct: 607 SIFRCMLGRSVHPDVRTYSALIHGLLRNGKLQGAMELLSEFLEKGLVPDVFTYNSIISGF 666

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C +  I +A  L   +   G  PN+ITY+ LINGLC+ G    A  LF+      G  G 
Sbjct: 667 CKQGGIGKAFQLHEYMCQKGISPNIITYNALINGLCKAGEIERARELFD------GIPGK 720

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               N VTY TIIDG CK G + KA  LF +M  K + PD   Y++LI G     +  +A
Sbjct: 721 GLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKGVPPDSFVYSALIDGCRKEGNTEKA 780

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L +E + +G      + N +MD  CK+GK+ EA++LLE M+ + V P+  T++ L+D 
Sbjct: 781 LSLFLESVQKGF-ASTSSLNALMDGFCKSGKVIEANQLLEDMVDKHVKPDHVTYTILIDY 839

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C TG +  A++ FV M+         +Y
Sbjct: 840 HCKTGFLKEAEQFFVDMQKRNLMPNALTY 868



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ M+++   P  +    L+ G + + +  + V  + K ++  G+ PD+  YN +
Sbjct: 464 DASRVFEIMVSLGVKPNAVIYTTLIKGHVQEGRFQEAV-RILKVMDKKGVQPDVLCYNSV 522

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   CK  ++      L  ++     P+   + +LI G C    +  A   F ++   G 
Sbjct: 523 IIGLCKSRKMEEAKDYLVEMIERGLKPNVYTYGALIHGYCKSGEMQVADRYFKEMLGCGI 582

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +  + LI+G C+ G T  A ++F  M       G    P+  TY+ +I GL + G 
Sbjct: 583 APNDVVCTALIDGYCKEGSTTEATSIFRCM------LGRSVHPDVRTYSALIHGLLRNGK 636

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A EL  +  +K + PDV TYNS+I GFC      +A  L   M  +G+ P+++T+N 
Sbjct: 637 LQGAMELLSEFLEKGLVPDVFTYNSIISGFCKQGGIGKAFQLHEYMCQKGISPNIITYNA 696

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK G+++ A  L + +  +G+  N  T++T++DG+C +G ++ A  LF  M   G
Sbjct: 697 LINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKG 756

Query: 389 CKHTVFSY 396
                F Y
Sbjct: 757 VPPDSFVY 764



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 8/269 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L   +   G  P L TYN++I   C+ G V   F +   + +     D   ++ LI G  
Sbjct: 258 LLFEMEEKGCSPSLVTYNVVIGGLCRAGEVDEAFELKKLMDKKGLVADVFTYSILIDGFG 317

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGV 247
            + R  EA  +  ++ + G KP  + Y+ LI+G  R G +  A  + EEM A G      
Sbjct: 318 KQKRCTEAKLMLEEMFSKGLKPGHVAYTALIDGFMRQGDSGEAFRVKEEMLARG------ 371

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             K N  TY  ++ G+CK G ++KA  L  +M    I PD  TYN++I G+    + +  
Sbjct: 372 -VKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIKPDTQTYNNMIEGYLKEQNTSRV 430

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             LL EM    + P   T  +I++ LC++G +++ASR+ E+M+  GV PN   ++TL+ G
Sbjct: 431 KDLLSEMKKSNLVPTAYTCGMIINGLCRHGSIEDASRVFEIMVSLGVKPNAVIYTTLIKG 490

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               GR   A  +   M+  G +  V  Y
Sbjct: 491 HVQEGRFQEAVRILKVMDKKGVQPDVLCY 519



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 183/398 (45%), Gaps = 34/398 (8%)

Query: 2   AFVSSTCSFHFTSISISALRCNFSSSF-PHTRKPKSSISKNEPSDPTTTAKLKESLRLT- 59
           A +   C    T+ + S  RC    S  P  R   + I            KL+ ++ L  
Sbjct: 591 ALIDGYCKEGSTTEATSIFRCMLGRSVHPDVRTYSALIH-----GLLRNGKLQGAMELLS 645

Query: 60  -------VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
                  V D  +    +   CK  G G        +AF + +YM     SP  +T +N 
Sbjct: 646 EFLEKGLVPDVFTYNSIISGFCKQGGIG--------KAFQLHEYMCQKGISPNIIT-YNA 696

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K    +    LF  +   GL  +  TY  +I+ +CK G +S  F +   +    
Sbjct: 697 LINGLCKAGEIERARELFDGIPGKGLAHNAVTYATIIDGYCKSGNLSKAFRLFDEMTLKG 756

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTK--LKAFGCKPNVITYSTLINGLCRTGHTIV 230
             PD+  +++LI G   E    +A +LF +   K F    ++   + L++G C++G  I 
Sbjct: 757 VPPDSFVYSALIDGCRKEGNTEKALSLFLESVQKGFASTSSL---NALMDGFCKSGKVIE 813

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  L E+M + +       KP+ VTYT +ID  CK GF+ +A++ F+ M+ +N+ P+ +T
Sbjct: 814 ANQLLEDMVDKH------VKPDHVTYTILIDYHCKTGFLKEAEQFFVDMQKRNLMPNALT 867

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y +L+ G+  A   +E   L  EM+ + ++PD VT++V++D   K G   +  +L++ M+
Sbjct: 868 YTALLSGYNMAGRRSEMFALFDEMIAKDIEPDGVTWSVMIDAHLKEGDHVKTLKLVDDML 927

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +G N + +    L+D  C    V+   ++   +E  G
Sbjct: 928 KKGGNVSKNVCHVLIDPLCRKEHVSEVLKVLEKIEEQG 965



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 132/276 (47%), Gaps = 6/276 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F LL     K   +D  +S F      G    L   N L++   K  ++   +     +L
Sbjct: 169 FELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNGML 228

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +    D   +T LI          E   L  +++  GC P+++TY+ +I GLCR G   
Sbjct: 229 EANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGEVD 288

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L + M     K G+V   +  TY+ +IDG  K+    +AK +  +M  K + P  V
Sbjct: 289 EAFELKKLM----DKKGLV--ADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHV 342

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            Y +LI GF    D  EA  +  EM+ +GV+ ++ T+N ++  +CK G M++A  LL  M
Sbjct: 343 AYTALIDGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEM 402

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           I+ G+ P+T T++ +++G+      +  K+L   M+
Sbjct: 403 IMVGIKPDTQTYNNMIEGYLKEQNTSRVKDLLSEMK 438



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 66/186 (35%), Positives = 91/186 (48%), Gaps = 6/186 (3%)

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +V TY+ LIN   R G+      L  EM          C P+ VTY  +I GLC+ G VD
Sbjct: 235 DVYTYTHLINAHFRAGNAKEGKRLLFEMEEKG------CSPSLVTYNVVIGGLCRAGEVD 288

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           +A EL   M  K +  DV TY+ LI GF       EA  +L EM  +G++P  V +  ++
Sbjct: 289 EAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAYTALI 348

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           D   + G   EA R+ E M+ RGV  N  T++ L+ G C  G +  A  L   M  +G K
Sbjct: 349 DGFMRQGDSGEAFRVKEEMLARGVKLNLFTYNALVKGVCKFGDMEKADALLNEMIMVGIK 408

Query: 391 HTVFSY 396
               +Y
Sbjct: 409 PDTQTY 414



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 79/178 (44%), Gaps = 35/178 (19%)

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMK--------------------------------- 280
           V +  +IDG  K+G  D+A   FL  K                                 
Sbjct: 167 VVFELLIDGYKKKGLFDEAVSFFLGAKRNGFVVGLLCCNGLLSDLLKANKLELFWRFYNG 226

Query: 281 --DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
             + N+  DV TY  LI+    A +  E   LL EM ++G  P +VT+NV++  LC+ G+
Sbjct: 227 MLEANVLHDVYTYTHLINAHFRAGNAKEGKRLLFEMEEKGCSPSLVTYNVVIGGLCRAGE 286

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DEA  L +LM  +G+  +  T+S L+DGF    R   AK +   M S G K    +Y
Sbjct: 287 VDEAFELKKLMDKKGLVADVFTYSILIDGFGKQKRCTEAKLMLEEMFSKGLKPGHVAY 344


>gi|297738285|emb|CBI27486.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 105/310 (33%), Positives = 157/310 (50%), Gaps = 9/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F  M   R  P P  S N L   L+K    D     FK + + G+   ++TYNI
Sbjct: 3   EEASECFLKMRKFRVFPKP-RSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYNI 61

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G +     +  ++  + FTPD V + SLI G      + E   +F ++K   
Sbjct: 62  MIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDAD 121

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C P+VITY+ LIN  C+      A     EM ANG        KPN VTY+T ID  CKE
Sbjct: 122 CDPDVITYNALINCFCKFERMPKAFEFLHEMKANG-------LKPNVVTYSTFIDAFCKE 174

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G + +A + F+ M+   + P+  TY SLI   C A +  EA  L+ E++  G++ +VVT+
Sbjct: 175 GMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEALKLVEEILQAGIKLNVVTY 234

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D LC+ G+M EA  +   M+  GV PN  T++ L+ GF     + +AK++   M+ 
Sbjct: 235 TALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILKEMKE 294

Query: 387 MGCKHTVFSY 396
              K  +  Y
Sbjct: 295 KCIKPDLLLY 304



 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 147/280 (52%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    D  + +F+++      PD+ TYN LINCFCK  R+   F  
Sbjct: 89  PDIVTYNSLIDGHGKLGLLDECICIFEQMKDADCDPDVITYNALINCFCKFERMPKAFEF 148

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   P+ V +++ I   C E  + EA   F  ++     PN  TY++LI+  C+
Sbjct: 149 LHEMKANGLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCK 208

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL L EE+     K       N VTYT ++DGLC+EG + +A+E+F  M +  +
Sbjct: 209 AGNLAEALKLVEEILQAGIKL------NVVTYTALLDGLCEEGRMKEAEEVFRAMLNAGV 262

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  TY +L+HGF  A +   A  +L EM ++ ++PD++ +  I+  LC   +++EA  
Sbjct: 263 APNQETYTALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKL 322

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L+  +   G+N N   ++TLMD +  +G+   A  L   M
Sbjct: 323 LIGEIKESGINTNAVIYTTLMDAYFKSGQATEALTLLEEM 362



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 157/343 (45%), Gaps = 32/343 (9%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
            G G +  +  +E  CIF+ M +    P  +T +N L  C  K +           + + 
Sbjct: 99  DGHGKLGLL--DECICIFEQMKDADCDPDVIT-YNALINCFCKFERMPKAFEFLHEMKAN 155

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P++ TY+  I+ FCK G +         + R   TP+   +TSLI   C    + EA
Sbjct: 156 GLKPNVVTYSTFIDAFCKEGMLQEAIKFFVDMRRVALTPNEFTYTSLIDANCKAGNLAEA 215

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L  ++   G K NV+TY+ L++GLC  G    A  +F  M N     GV   PN  TY
Sbjct: 216 LKLVEEILQAGIKLNVVTYTALLDGLCEEGRMKEAEEVFRAMLNA----GVA--PNQETY 269

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T ++ G  K   ++ AK++  +MK+K I PD++ Y +++ G C  +   EA  L+ E+ +
Sbjct: 270 TALVHGFIKAKEMEYAKDILKEMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKE 329

Query: 317 QGVQPDVVTFNVIMDE-----------------------LCKNGKMDEASRLLELMILRG 353
            G+  + V +  +MD                        LCKN   + A +L + M+ +G
Sbjct: 330 SGINTNAVIYTTLMDAYFKSGQATEALTLLEEMLDLVDGLCKNNCFEVAKKLFDEMLDKG 389

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + P+   ++ L+DG    G +  A  L   M  +G +  + +Y
Sbjct: 390 MMPDKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAY 432



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/282 (27%), Positives = 138/282 (48%), Gaps = 18/282 (6%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L +         +F+ + + G+ P+  TY  L++ F K   + +   +L 
Sbjct: 231 VVTYTALLDGLCEEGRMKEAEEVFRAMLNAGVAPNQETYTALVHGFIKAKEMEYAKDILK 290

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +   C  PD + + +++ GLC ESR+ EA  L  ++K  G   N + Y+TL++   ++G
Sbjct: 291 EMKEKCIKPDLLLYGTILWGLCNESRLEEAKLLIGEIKESGINTNAVIYTTLMDAYFKSG 350

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L EEM +                  ++DGLCK    + AK+LF +M DK + P
Sbjct: 351 QATEALTLLEEMLD------------------LVDGLCKNNCFEVAKKLFDEMLDKGMMP 392

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D + Y +LI G     +  EA  L   M++ G++ D+  +  ++  L  +G++ +A  LL
Sbjct: 393 DKIAYTALIDGNMKHGNLQEALNLRDRMIEIGMELDLHAYTALIWGLSHSGQVQKARNLL 452

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + MI +GV P+   +  L+  +   G+V+ A EL   M   G
Sbjct: 453 DEMIGKGVLPDEVVYMCLIKKYYALGKVDEALELQNEMAKRG 494



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/129 (26%), Positives = 64/129 (49%)

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A E FL+M+   + P   + N+L+H        + +     +M   G++  V T+N
Sbjct: 1   MLEEASECFLKMRKFRVFPKPRSCNALLHRLSKVGRGDLSRKFFKDMGAAGIKRSVFTYN 60

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G ++ A  L   M   G  P+  T+++L+DG    G ++    +F  M+  
Sbjct: 61  IMIDYLCKEGDLEMARSLFTQMKEAGFTPDIVTYNSLIDGHGKLGLLDECICIFEQMKDA 120

Query: 388 GCKHTVFSY 396
            C   V +Y
Sbjct: 121 DCDPDVITY 129


>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
 gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
          Length = 546

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S N+L   L      D  L +   +   G+ PD+ TY  ++  +C  G +     +
Sbjct: 202 PNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQQL 261

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+ S   PDA  +T L+ G C   ++ +AA +  +++A G KPN +TYS +I   C+
Sbjct: 262 FDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCK 321

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G +I A +L  EM       G    P+T     ++D LC++G   +A E++ QM  K++
Sbjct: 322 EGKSIEACDLTREM------LGAGYVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSV 375

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD    ++LI+  C      EA  L  E +++G  P ++T+N ++  LC+NG++ EA R
Sbjct: 376 PPDNTVVSTLIYWLCKNGMVQEARGLFDE-LERGFVPSLLTYNSLIIGLCENGELQEAGR 434

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M+ R   PN  T+  L+ GFC  G+ N    LF  M + GC  + F Y
Sbjct: 435 VWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTPSKFLY 486



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 113/251 (45%), Gaps = 7/251 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T + +L               +   + + G+ P+  TY+++I   CK G+      +
Sbjct: 272 PDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEACDL 331

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L + + PD      ++  LC + +  EA  ++ ++      P+    STLI  LC+
Sbjct: 332 TREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVVSTLIYWLCK 391

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF+E+  G         P+ +TY ++I GLC+ G + +A  ++  M ++  
Sbjct: 392 NGMVQEARGLFDELERG-------FVPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRY 444

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TY +LI GFC     NE   L  EM+ +G  P    +  ++D L +    D    
Sbjct: 445 EPNAMTYEALIKGFCKIGKSNEGYALFKEMVAKGCTPSKFLYQALVDSLSEPSHDDTVWT 504

Query: 345 LLELMILRGVN 355
           ++E + L G +
Sbjct: 505 IVEAVALSGQD 515



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 61/113 (53%)

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P++V+ N L+ G     D + A  +L EM   G+ PDVVT+  ++   C  G ++ A 
Sbjct: 200 ITPNLVSCNILLKGLVGMGDLDAALKVLDEMTGWGIVPDVVTYTTVLTAYCAKGDLEGAQ 259

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L + ++  G  P+ + ++ L+DG+C  G++  A  +   ME+ G K    +Y
Sbjct: 260 QLFDDIVASGRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTY 312


>gi|224123236|ref|XP_002330266.1| predicted protein [Populus trichocarpa]
 gi|222871301|gb|EEF08432.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 101/298 (33%), Positives = 161/298 (54%), Gaps = 18/298 (6%)

Query: 83  TAITPN---EAFC-------IFDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLF 130
           TA+T N   + +C        FDY   M      P ++++N+L   L      D    + 
Sbjct: 295 TAVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGII 354

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           K ++  GL PD  TYNILIN +C+ G V   F +   ++     P  V +TSLI  L   
Sbjct: 355 KEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYVLSKR 414

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            R+ +A  LF K+   G  P++I ++ LI+G C  G+   A  + +EM     +  VV  
Sbjct: 415 GRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEM----DQMKVV-- 468

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+ VT+ T++ G C+EG V+ A+EL  +MK + I PD ++YN+LI G+    D  +A  +
Sbjct: 469 PDEVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRV 528

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             EM+  G  P ++T+N ++  LCKN + D A +LL+ MI +G+ PN +T+ +L++G 
Sbjct: 529 RDEMLSIGFNPTLLTYNALIQGLCKNEEGDHAEQLLKEMISKGITPNDNTYLSLIEGI 586



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/339 (30%), Positives = 164/339 (48%), Gaps = 32/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A+ ++  M  MR     +T FN++   L K             + + G+ P++ TYN 
Sbjct: 173 EKAWVLYAEMFRMRIKSSVVT-FNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNT 231

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ +C  GRV    ++   +      PD+  + S I G+C E ++ EA+ +  K+K  G
Sbjct: 232 IIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIG 291

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV-------------CK---- 250
            +P  +TY+TLI+G C  G+  +A +  ++M    G    V             CK    
Sbjct: 292 LRPTAVTYNTLIDGYCNKGNLEMAFDYRDKMVR-EGLMPTVSTYNMLIHALFLDCKMDEA 350

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        P++VTY  +I+G C+ G V KA  L  +M  K I P  VTY SLI+ 
Sbjct: 351 DGIIKEMSEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTYTSLIYV 410

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
                   +A+ L  +++ +G+ PD++ FN ++D  C NG MD A  +L+ M    V P+
Sbjct: 411 LSKRGRMKQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPD 470

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             TF+TLM G C  G+V  A+EL   M+S G K    SY
Sbjct: 471 EVTFNTLMQGRCREGKVEAARELIEEMKSRGIKPDHISY 509



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  IFD M   R   P   ++      + K    +    + +++   GL P   TYN LI
Sbjct: 245 ARMIFDLM-KCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAVTYNTLI 303

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +C  G +   F    +++R    P    +  LI  L  + ++ EA  +  ++   G  
Sbjct: 304 DGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEMSEKGLV 363

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ +TY+ LING CR G+   A  L +EM +         +P  VTYT++I  L K G +
Sbjct: 364 PDSVTYNILINGYCRCGNVKKAFTLHDEMISKG------IQPTRVTYTSLIYVLSKRGRM 417

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A +LF ++  K I PD++ +N+LI G C   + + A  +L EM    V PD VTFN +
Sbjct: 418 KQADDLFEKIVRKGIFPDLIMFNALIDGHCANGNMDRAFAMLKEMDQMKVVPDEVTFNTL 477

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           M   C+ GK++ A  L+E M  RG+ P+  +++TL+ G+   G +  A  +   M S+G 
Sbjct: 478 MQGRCREGKVEAARELIEEMKSRGIKPDHISYNTLISGYSKRGDMKDAFRVRDEMLSIGF 537

Query: 390 KHTVFSY 396
             T+ +Y
Sbjct: 538 NPTLLTY 544



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 149/287 (51%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++LL     + K  D     F  +   G+ P ++  N +++ F K  R    +V+   + 
Sbjct: 124 YDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAEMF 183

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R       V F  +I  LC E ++ +A      ++A G KPNV+TY+T+I+G C  G   
Sbjct: 184 RMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHGYCSRGRVE 243

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +F+ M           KP++ TY + I G+CKEG +++A  +  +MK+  + P  V
Sbjct: 244 GARMIFDLMKCRG------VKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPTAV 297

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G+C   +   A     +M+ +G+ P V T+N+++  L  + KMDEA  +++ M
Sbjct: 298 TYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTYNMLIHALFLDCKMDEADGIIKEM 357

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +G+ P++ T++ L++G+C  G V  A  L   M S G + T  +Y
Sbjct: 358 SEKGLVPDSVTYNILINGYCRCGNVKKAFTLHDEMISKGIQPTRVTY 404



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 114/219 (52%), Gaps = 6/219 (2%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V +  LI+  C   R  +A   F  +K  G  P+V   + +++   ++  T  A  L+ E
Sbjct: 122 VLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACNDMLSLFLKSNRTEKAWVLYAE 181

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M      F +  K + VT+  +I+ LCKEG + KAKE    M+   I P+VVTYN++IHG
Sbjct: 182 M------FRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEALGIKPNVVTYNTIIHG 235

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +C       A  +   M  +GV+PD  T+   +  +CK GK++EAS +LE M   G+ P 
Sbjct: 236 YCSRGRVEGARMIFDLMKCRGVKPDSYTYGSFISGMCKEGKLEEASGMLEKMKEIGLRPT 295

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++TL+DG+C  G +  A +    M   G   TV +Y
Sbjct: 296 AVTYNTLIDGYCNKGNLEMAFDYRDKMVREGLMPTVSTY 334



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 83/164 (50%), Gaps = 3/164 (1%)

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            +F E+    G  G+      V Y  +I   C+    D A E F  MK K + P V   N
Sbjct: 104 EVFNELGVARGVLGI---KTYVLYDLLIRACCELKRGDDAFECFDMMKGKGVIPHVHACN 160

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            ++  F  +N   +A  L  EM    ++  VVTFN++++ LCK GK+ +A   + LM   
Sbjct: 161 DMLSLFLKSNRTEKAWVLYAEMFRMRIKSSVVTFNIMINVLCKEGKLKKAKEFIGLMEAL 220

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+ PN  T++T++ G+C  GRV  A+ +F  M+  G K   ++Y
Sbjct: 221 GIKPNVVTYNTIIHGYCSRGRVEGARMIFDLMKCRGVKPDSYTY 264


>gi|356544498|ref|XP_003540687.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Glycine max]
          Length = 623

 Score =  174 bits (440), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 147/262 (56%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++NL    L          ++ K +   G+ PD  T+NILIN +C+ G     F +L 
Sbjct: 356 LVTYNLFIHALFMEGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLD 415

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++     P  V +TSLI  L   +R+ EA ALF+K++  G  P++I ++ LI+G C  G
Sbjct: 416 EMVGKGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANG 475

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  L +EM N      +   P+ +TY T++ G C+EG V++A++L  +MK + I P
Sbjct: 476 NIDRAFQLLKEMDN------MKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKP 529

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D ++YN+LI G+    D  +A  +  EMM  G  P ++T+N ++  LCKN + + A  LL
Sbjct: 530 DHISYNTLISGYSKRGDMKDAFRVRDEMMTTGFDPTILTYNALIQGLCKNQEGEHAEELL 589

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
           + M+ +G+ P+ ST+ ++++  
Sbjct: 590 KEMVSKGITPDDSTYLSIIEAM 611



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 100/330 (30%), Positives = 155/330 (46%), Gaps = 32/330 (9%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + +N+R S   L +FN++   L K             + + G+ P++ TYN +I+  C  
Sbjct: 208 FRMNIRSS---LYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHCLR 264

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+     V+   +      PD   + S I GLC E R+ EA+ L  K+   G  PN +TY
Sbjct: 265 GKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAVTY 324

Query: 216 STLINGLCRTGH------------------TIVALNLFEEMANGNGKFGVV--------- 248
           + LI+G C  G                   ++V  NLF       G+ G           
Sbjct: 325 NALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEMRE 384

Query: 249 --CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+ VT+  +I+G C+ G   +A  L  +M  K I P +VTY SLI+     N   E
Sbjct: 385 KGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMVGKGIQPTLVTYTSLIYVLGKRNRMKE 444

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A+ L  ++  +G+ PD++ FN ++D  C NG +D A +LL+ M    V P+  T++TLM 
Sbjct: 445 ADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQ 504

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C  G+V  A++L   M+  G K    SY
Sbjct: 505 GYCREGKVEEARQLLDEMKRRGIKPDHISY 534



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 157/327 (48%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +         +     +F+ +   GL PD YTYN  I+  CK GR+     +
Sbjct: 249 PNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGL 308

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC-----------------------------------A 189
           + ++L     P+AV + +LI G C                                    
Sbjct: 309 ICKMLEGGLVPNAVTYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFM 368

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E R+ +A  +  +++  G  P+ +T++ LING CR G    A  L +EM  G G      
Sbjct: 369 EGRMGDADNMIKEMREKGMMPDAVTHNILINGYCRCGDAKRAFGLLDEMV-GKG-----I 422

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P  VTYT++I  L K   + +A  LF +++ + + PD++ +N+LI G C   + + A  
Sbjct: 423 QPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALIDGHCANGNIDRAFQ 482

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL EM +  V PD +T+N +M   C+ GK++EA +LL+ M  RG+ P+  +++TL+ G+ 
Sbjct: 483 LLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIKPDHISYNTLISGYS 542

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  A  +   M + G   T+ +Y
Sbjct: 543 KRGDMKDAFRVRDEMMTTGFDPTILTY 569



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 116/217 (53%), Gaps = 6/217 (2%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           F  L++  C   +  EA   F  +K  G  PN+ T + +++   +   T +A  L+ EM 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEM- 207

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                F +  + +  T+  +I+ LCKEG + KAKE    M+   + P+VVTYN++IHG C
Sbjct: 208 -----FRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLGVKPNVVTYNTIIHGHC 262

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
               +  A  +   M D+G++PD  T+N  +  LCK G+++EAS L+  M+  G+ PN  
Sbjct: 263 LRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAV 322

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ L+DG+C  G ++ A      M S G   ++ +Y
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTY 359



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 68/244 (27%), Positives = 117/244 (47%), Gaps = 6/244 (2%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           +++L+  +C++ + +        I    F P+      ++      +R   A  L+ ++ 
Sbjct: 149 FDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQMLSLFLKLNRTQMAWVLYAEMF 208

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
               + ++ T++ +IN LC+ G    A      M       GV  KPN VTY TII G C
Sbjct: 209 RMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMET----LGV--KPNVVTYNTIIHGHC 262

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
             G   +A+ +F  MKDK + PD  TYNS I G C      EA+ L+ +M++ G+ P+ V
Sbjct: 263 LRGKFQRARVIFQTMKDKGLEPDCYTYNSFISGLCKEGRLEEASGLICKMLEGGLVPNAV 322

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N ++D  C  G +D+A    + MI +G+  +  T++  +    + GR+  A  +   M
Sbjct: 323 TYNALIDGYCNKGDLDKAYAYRDEMISKGIMASLVTYNLFIHALFMEGRMGDADNMIKEM 382

Query: 385 ESMG 388
              G
Sbjct: 383 REKG 386



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 66/214 (30%), Positives = 103/214 (48%), Gaps = 7/214 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + D M+  +   P L ++  L   L K        +LF ++   GL PD+  +N LI
Sbjct: 410 AFGLLDEMVG-KGIQPTLVTYTSLIYVLGKRNRMKEADALFSKIQQEGLLPDIIVFNALI 468

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  C  G +   F +L  +      PD + + +L++G C E ++ EA  L  ++K  G K
Sbjct: 469 DGHCANGNIDRAFQLLKEMDNMKVLPDEITYNTLMQGYCREGKVEEARQLLDEMKRRGIK 528

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ I+Y+TLI+G  + G    A  + +EM            P  +TY  +I GLCK    
Sbjct: 529 PDHISYNTLISGYSKRGDMKDAFRVRDEMMTTG------FDPTILTYNALIQGLCKNQEG 582

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           + A+EL  +M  K I PD  TY S+I      +D
Sbjct: 583 EHAEELLKEMVSKGITPDDSTYLSIIEAMETVDD 616



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 84/163 (51%), Gaps = 3/163 (1%)

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +F+E+A    +   V    T+ +  ++   C+    ++A E F  +K+K   P++ T N 
Sbjct: 130 IFDELALARDR---VDAKTTLIFDLLVRAYCELKKPNEALECFYLIKEKGFVPNIETCNQ 186

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           ++  F   N    A  L  EM    ++  + TFN++++ LCK GK+ +A   +  M   G
Sbjct: 187 MLSLFLKLNRTQMAWVLYAEMFRMNIRSSLYTFNIMINVLCKEGKLKKAKEFIGHMETLG 246

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           V PN  T++T++ G CL G+   A+ +F +M+  G +   ++Y
Sbjct: 247 VKPNVVTYNTIIHGHCLRGKFQRARVIFQTMKDKGLEPDCYTY 289


>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
 gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
          Length = 653

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +FN L G L +   ++ V  +  ++   G  PD+  Y  +++  CK G +     
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHE 316

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L R+      P+ V + +++KGLC+  R  +A  L  ++    C  + +T++ L++  C
Sbjct: 317 ILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFC 376

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G     + L E+M          C P+ +TYTT+I+G CKEG +D+A  L   M    
Sbjct: 377 QNGLVYRVIELLEQMLEHG------CVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACG 430

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ ++Y  ++ G C A  W +A  L+ +M++QG  P+ VTFN +++ LCK G +++A 
Sbjct: 431 CRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAI 490

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+ M+L G +P+  ++ST++DG    G+ + A EL   M + G       Y
Sbjct: 491 ELLKQMLLNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIY 543



 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 158/312 (50%), Gaps = 10/312 (3%)

Query: 89  EAFCIFDYMLNMRPSP-PPLTSFNLLFGC-LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +A  + D M     +P PP+    L   C       + + + + + L+  G   D+   N
Sbjct: 133 DALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCN 192

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           +++N  C  G      + L R L + F   PD V++ +++KGLC   R      L  ++ 
Sbjct: 193 LVLNAVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMV 252

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             GC PNV+T++TLI  LCR G       +  +M +        C P+   Y T++DG+C
Sbjct: 253 RVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHG------CTPDIRMYATVLDGVC 306

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG ++ A E+  +M    + P+VV YN+++ G C A  W +A  LL EM D     D V
Sbjct: 307 KEGHLEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCPLDDV 366

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TFN+++D  C+NG +     LLE M+  G  P+  T++T+++GFC  G ++ A  L  SM
Sbjct: 367 TFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSM 426

Query: 385 ESMGCKHTVFSY 396
            + GC+    SY
Sbjct: 427 AACGCRPNTISY 438



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 147/282 (52%), Gaps = 8/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +      V+ L +++   G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 366 VTFNILVDFFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKS 425

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC+  R ++A  L +++   GC PN +T++T+IN LC+ G 
Sbjct: 426 MAACGCRPNTISYTIVLKGLCSAERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGL 485

Query: 228 TIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  D+A EL   M +K ++P
Sbjct: 486 VEQAIELLKQMLLNG-------CSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSP 538

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          N    +   + D  ++ D V +N ++  LCK G  D A   L
Sbjct: 539 NTIIYSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFL 598

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  PN ST++ L+ G    G V  A+E+   + S G
Sbjct: 599 AYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/257 (26%), Positives = 128/257 (49%), Gaps = 14/257 (5%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           YN +++ +C+ G+++    +   +      P+A  +  +++ LCA  RI +A ++  +++
Sbjct: 86  YNAMVSGYCRAGQLASARRLAASVP---VPPNAYTYFPVVRALCARGRIADALSVLDEMR 142

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIV---ALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
             GC P    Y  ++   C  G       A+ + +++ +G G     C  +      +++
Sbjct: 143 RRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDL-HGRG-----CALDVGNCNLVLN 196

Query: 262 GLCKE-GFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            +C + G VD+A  L   +      +PDVV+YN+++ G C A  W     L+ EM+  G 
Sbjct: 197 AVCDQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGC 256

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVTFN ++  LC+NG  +   ++L  M+  G  P+   ++T++DG C  G +  A E
Sbjct: 257 PPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGHLEVAHE 316

Query: 380 LFVSMESMGCKHTVFSY 396
           +   M S G K  V  Y
Sbjct: 317 ILDRMPSYGLKPNVVCY 333



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 57/222 (25%), Positives = 102/222 (45%), Gaps = 15/222 (6%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            ++LI+ LCA  R  EAA   +   A G    V+ Y+ +++G CR G    A  L     
Sbjct: 52  LSALIRSLCAAGRTAEAARALSAAAARG-GAGVVAYNAMVSGYCRAGQLASARRL----- 105

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                  V   PN  TY  ++  LC  G +  A  +  +M+ +   P    Y+ ++   C
Sbjct: 106 ----AASVPVPPNAYTYFPVVRALCARGRIADALSVLDEMRRRGCAPIPPMYHVILEAAC 161

Query: 300 ---YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC-KNGKMDEASRLL-ELMILRGV 354
                  +  A  +L ++  +G   DV   N++++ +C + G +DEA RLL +L    G 
Sbjct: 162 SRGGGGGFRSAVRVLQDLHGRGCALDVGNCNLVLNAVCDQGGSVDEALRLLRDLPTSFGC 221

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +P+  +++ ++ G C+  R    ++L   M  +GC   V ++
Sbjct: 222 DPDVVSYNAVLKGLCMAKRWGRVQDLMEEMVRVGCPPNVVTF 263



 Score = 57.8 bits (138), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 56/134 (41%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    D  L L   + + G+ P+   Y+ + +   K GR++    +
Sbjct: 503 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEGRINRVIQM 562

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I       DAV + ++I  LC       A      + + GC PN  TY+ LI GL  
Sbjct: 563 FDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLAS 622

Query: 225 TGHTIVALNLFEEM 238
            G    A  +  E+
Sbjct: 623 EGFVKEAQEMLTEL 636



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 1/120 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M+N   SP  +  ++ +   L+K    + V+ +F  +    +  D   YN 
Sbjct: 522 DEALELLNVMVNKGMSPNTII-YSSIASALSKEGRINRVIQMFDNIQDVTIRSDAVLYNA 580

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G        L  ++ S   P+   +T LI+GL +E  + EA  + T+L + G
Sbjct: 581 VISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLASEGFVKEAQEMLTELCSKG 640


>gi|410109885|gb|AFV61022.1| pentatricopeptide repeat-containing protein 11, partial
           [Coelocarpum swinglei]
          Length = 429

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 115 LMKLKYFKLVWXFYKEILECGYPASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPS 174

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 175 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 234

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 235 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLSPDLITYNTLIY 288

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +++  ++D  CK G ++ A    + MI   +  
Sbjct: 289 GLCKKGDLKQAQDLIDEMRMKGLKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRL 348

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G +    +Y
Sbjct: 349 DDVAYTALISGLCQEGRSIDAEKMLREMLSVGLRPDTGTY 388



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 156/291 (53%), Gaps = 16/291 (5%)

Query: 79  QGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           +GDI       A  +FD +    +RPS   + SFN L     +    D    L   ++++
Sbjct: 153 EGDIRV-----ALSVFDAITKWGLRPS---VVSFNTLMNGYIRLGDLDEGFRLKSAMHAS 204

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A
Sbjct: 205 GVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLA 264

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             ++ ++ +    P++ITY+TLI GLC+ G    A +L +EM           KP+ ++Y
Sbjct: 265 MEVYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKG------LKPDKISY 318

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+IDG CKEG ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+ 
Sbjct: 319 TTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAEKMLREMLS 378

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
            G++PD  T+ +I++E CK G +   S+LL+ M   G  P+  T++ LM+G
Sbjct: 379 VGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 429



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 159/293 (54%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K       LS+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 137 PASLYFFNILMHRFCKEGDIRVALSVFDAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 196

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 197 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 256

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M+ K 
Sbjct: 257 KNGRVDLAMEVYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMRMKG 310

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD ++Y +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 311 LKPDKISYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSIDAE 370

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 371 KMLREMLSVGLRPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTY 423


>gi|326510071|dbj|BAJ87252.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 825

 Score =  174 bits (440), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 100/289 (34%), Positives = 148/289 (51%), Gaps = 11/289 (3%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG- 161
           +PP   ++N L     K        +   R+   GL PD +TYN L+   C+ G ++   
Sbjct: 86  APPNRCTYNTLINAHCKLALLADARAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAAC 145

Query: 162 --FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
             FV + R   +C+  D  ++T LIKGLCA  RI +A  +F K+    C+P V TY+ L+
Sbjct: 146 GLFVQMPRRWGACY--DRYSYTILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLL 203

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +GLC+      A  L  EM N     GVV  PN VTY  +I GLC+EG  D   +L  +M
Sbjct: 204 DGLCKVRRVGEAEALLGEMVNK----GVV--PNVVTYNALIGGLCQEGRFDDVTKLLEKM 257

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           + +  +PD  TY  ++HG C          +L E + +GV  +V+T+N +++  CK G M
Sbjct: 258 EIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDM 317

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             A  +L+LM    VNP   TF+ ++ GFC  G+V+ A      M   G
Sbjct: 318 KAALDVLQLMKRNRVNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAG 366



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 160/344 (46%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +   M+N +   P + ++N L G L +   +D V  L +++      PD +TY  
Sbjct: 213 GEAEALLGEMVN-KGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQ 271

Query: 148 LINCFCKMGRVSHGFVVLGRIL-----------------------------------RSC 172
           +++  CK G+V HG  VL   +                                   R+ 
Sbjct: 272 VVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCKGGDMKAALDVLQLMKRNR 331

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             P    F  +I G C   ++ +A A  T++   G  PN +T+++LI+G C  G   +AL
Sbjct: 332 VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGLSPNTVTFNSLISGQCSVGERKIAL 391

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L + M     ++GV+  P+  TY   ID LC EG +++A  LF  +  K I    V Y 
Sbjct: 392 RLLDLME----EYGVL--PDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYT 445

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SL+HG+C   D + A  L+ +M  +   PDV T+N ++D LCK  ++D A  LL+ M  +
Sbjct: 446 SLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQ 505

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+ P T TF+ L+       +   A +++  M S GCK    +Y
Sbjct: 506 GIEPTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTY 549



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L   L K +      +L   + + G+ P++ TYN LI   C+ GR      +
Sbjct: 194 PGVHTYTVLLDGLCKVRRVGEAEALLGEMVNKGVVPNVVTYNALIGGLCQEGRFDDVTKL 253

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++     +PD   +T ++ GLC   ++   A +  +    G    V+TY+ LING C+
Sbjct: 254 LEKMEIQRHSPDCWTYTQVVHGLCKHGKVGHGAKVLHEAIGKGVALEVLTYNALINGYCK 313

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL++ + M            P   T+  +I G C  G V KA     QM    +
Sbjct: 314 GGDMKAALDVLQLMKRNR------VNPGVQTFNEVIHGFCCGGKVHKAMAFLTQMAGAGL 367

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+ VT+NSLI G C   +   A  LL  M + GV PD  T+ + +D LC  G+++EA  
Sbjct: 368 SPNTVTFNSLISGQCSVGERKIALRLLDLMEEYGVLPDRQTYAIFIDALCDEGQLEEAHS 427

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   + ++G+  +   +++L+ G+C  G ++ A  L   M S  C   V +Y
Sbjct: 428 LFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGLMEKMASENCMPDVHTY 479



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 78/260 (30%), Positives = 133/260 (51%), Gaps = 9/260 (3%)

Query: 141 DLYTYNILINCFCKMG----RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           D+ ++N  +  +   G    R++H     G +L+S   P+   + +LI   C  + + +A
Sbjct: 50  DVRSHNAALIAYSSRGSRAPRLAHLLASFGAMLKSGAPPNRCTYNTLINAHCKLALLADA 109

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
            A   +++  G  P+  TY+ L+ GLCR G    A  LF +M     ++G     +  +Y
Sbjct: 110 RAALVRMREAGLAPDTFTYNCLMLGLCRAGLLAAACGLFVQMPR---RWGAC--YDRYSY 164

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T +I GLC  G +D A  +F +M      P V TY  L+ G C      EA  LL EM++
Sbjct: 165 TILIKGLCAAGRIDDACRVFAKMSRGWCRPGVHTYTVLLDGLCKVRRVGEAEALLGEMVN 224

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +GV P+VVT+N ++  LC+ G+ D+ ++LLE M ++  +P+  T++ ++ G C  G+V H
Sbjct: 225 KGVVPNVVTYNALIGGLCQEGRFDDVTKLLEKMEIQRHSPDCWTYTQVVHGLCKHGKVGH 284

Query: 377 AKELFVSMESMGCKHTVFSY 396
             ++       G    V +Y
Sbjct: 285 GAKVLHEAIGKGVALEVLTY 304



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 131/301 (43%), Gaps = 28/301 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++ +    L      +   SLF  L   G+      Y  L++ +C++G +   F +
Sbjct: 404 PDRQTYAIFIDALCDEGQLEEAHSLFSCLPMKGIKAHNVIYTSLVHGYCQVGDIDSAFGL 463

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + ++      PD   + +LI GLC   R+  A  L  K+K  G +P   T++ LI  +  
Sbjct: 464 MEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNILIKQMLW 523

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII-----DGLCKEGFVDKAKELFLQM 279
                 A  ++E+M +        CKP+  TYT  I     +G  KE  +D A    ++M
Sbjct: 524 DKKHADAAKMYEQMISSG------CKPDKQTYTLKISTDWFEGATKEENIDMA---VVEM 574

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC----- 334
            +  + PDV TYN++I  +  A    +A    ++M+   + PD  T++++++ +C     
Sbjct: 575 HEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDS 634

Query: 335 ------KNGKMDEASRLLEL---MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
                 K  KM +   L EL   M      P  ST+  L+ G C   R+   + L + M+
Sbjct: 635 DAFDNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQ 694

Query: 386 S 386
            
Sbjct: 695 G 695



 Score = 84.3 bits (207), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 124/310 (40%), Gaps = 45/310 (14%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D+   L +++ S    PD++TYN LI+  CK+ R+     +L ++ +    P    F  L
Sbjct: 458 DSAFGLMEKMASENCMPDVHTYNTLIDGLCKVKRLDRAIDLLDKMKKQGIEPTTCTFNIL 517

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT--------IVALN-- 233
           IK +  + +  +AA ++ ++ + GCKP+  TY+  I+     G T        +V ++  
Sbjct: 518 IKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENIDMAVVEMHEA 577

Query: 234 -LFEEMANGNG--------------------KFGVVCKPNTVTYTTIIDGLCKEGFVD-- 270
            +F ++   N                        V   P+  TY+ +++ +C +   D  
Sbjct: 578 GVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAF 637

Query: 271 ------------KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
                         +ELF QM + +  P + TY +L+ G C      E   LL++M    
Sbjct: 638 DNEKIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNS 697

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +  D    + ++   C      EA      M  +   P   +   L+ G C +G    A 
Sbjct: 698 ILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMAV 757

Query: 379 ELFVSMESMG 388
            +F  M  +G
Sbjct: 758 SIFSDMLGLG 767



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 64/308 (20%), Positives = 124/308 (40%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI--NCFCKMGRVSHGF 162
           P   +FN+L   +   K +     +++++ S+G  PD  TY + I  + F    +  +  
Sbjct: 509 PTTCTFNILIKQMLWDKKHADAAKMYEQMISSGCKPDKQTYTLKISTDWFEGATKEENID 568

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           + +  +  +   PD   + ++IK         +A     K+ +    P+  TYS L+N +
Sbjct: 569 MAVVEMHEAGVFPDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYM 628

Query: 223 CRTGHTIVALN--------------LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           C    +    N              LFE+M   +        P   TY  ++ GLC +  
Sbjct: 629 CNKDDSDAFDNEKIWKMVDVRNLQELFEQMCESDAA------PGISTYKALLRGLCNQCR 682

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++ + L L+M+  +I  D    + L+  +C    + EA      M  Q  QP + +  +
Sbjct: 683 LEEVEWLLLKMQGNSILLDEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCL 742

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC +G    A  +   M+  G N +   +  L+D     G      E+   M++  
Sbjct: 743 LLSGLCDSGDHGMAVSIFSDMLGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKK 802

Query: 389 CKHTVFSY 396
           C  +  +Y
Sbjct: 803 CVASTRTY 810



 Score = 45.4 bits (106), Expect = 0.053,   Method: Compositional matrix adjust.
 Identities = 49/240 (20%), Positives = 88/240 (36%), Gaps = 55/240 (22%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC----------- 153
           P + ++N +          +       ++ S  + PD  TY+IL+N  C           
Sbjct: 581 PDVETYNAIIKAYVDAGLKEKAFFAHVKMLSVPIDPDCTTYSILLNYMCNKDDSDAFDNE 640

Query: 154 ---KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA----- 205
              KM  V +   +  ++  S   P    + +L++GLC + R+ E   L  K++      
Sbjct: 641 KIWKMVDVRNLQELFEQMCESDAAPGISTYKALLRGLCNQCRLEEVEWLLLKMQGNSILL 700

Query: 206 --------FGCKPNVITYST----------------------LINGLCRTGHTIVALNLF 235
                    GC  N+  Y                        L++GLC +G   +A+++F
Sbjct: 701 DEDMSDYLLGCYCNLEMYREACEQFRSMAHQSFQPGLKSCCLLLSGLCDSGDHGMAVSIF 760

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
            +M       G+    + V +  +ID L ++G      E+   M  K       TY SL+
Sbjct: 761 SDM------LGLGYNYDEVVWKLLIDCLHEKGHAGACLEMLSVMDAKKCVASTRTYASLV 814


>gi|449523421|ref|XP_004168722.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Cucumis sativus]
          Length = 628

 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/265 (33%), Positives = 148/265 (55%), Gaps = 6/265 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++++N L   L   +  D    + K +   G+ PD  TYNILIN +C+       F++
Sbjct: 359 PTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLL 418

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L S   P    +TSL+  L  ++R+ EA  LF K+ + G  P+ I ++ LI+G C 
Sbjct: 419 HDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCS 478

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  L ++M        +   P+ VT+ TI+ G C+EG V++A+ELF +MK + I
Sbjct: 479 NSNVKGAFELLKDMDR------MKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGI 532

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +++N+LI G+    D  +A  +  EM+D G  P V+T+N ++  LCKN + D A  
Sbjct: 533 KPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLAEE 592

Query: 345 LLELMILRGVNPNTSTFSTLMDGFC 369
           LL+ M+ +G+ P+ +T+ TL++G  
Sbjct: 593 LLKEMVSKGMTPDDTTYFTLIEGIA 617



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 153/301 (50%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF  F Y +  +   P + + N L     K    +    L+  +    +   +YT+NI
Sbjct: 168 DEAFECF-YTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLRIKSSVYTFNI 226

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK G++      +G +  S   P+ V + +++ G C+  R+  A A+ T +K   
Sbjct: 227 MINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVEAADAILTTMKRQK 286

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+  TY +LI+G+C+ G    A  +FEEM           +P+ V Y T+IDG C +G
Sbjct: 287 IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKG------LRPSAVIYNTLIDGFCNKG 340

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A     +M  K I+P + TYNSLIH        +EA C++ E+ ++G+ PD +T+N
Sbjct: 341 NLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGISPDAITYN 400

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++  C+     +A  L + M+  G+ P   T+++L+       R+  A +LF  + S 
Sbjct: 401 ILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSLLHVLSKKNRMKEADDLFKKITSE 460

Query: 388 G 388
           G
Sbjct: 461 G 461



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/342 (28%), Positives = 163/342 (47%), Gaps = 42/342 (12%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ ++  M  +R      T FN++   L K             + ++G+ P++ TYN ++
Sbjct: 205 AWVLYAEMFRLRIKSSVYT-FNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIV 263

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +C  GRV     +L  + R    PD+  + SLI G+C + R+ EA+ +F ++   G +
Sbjct: 264 HGYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLR 323

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+ + Y+TLI+G C  G+  +A    +EM     K G+   P   TY ++I  L  E   
Sbjct: 324 PSAVIYNTLIDGFCNKGNLDMASAYKDEML----KKGI--SPTMSTYNSLIHALFMEQRT 377

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCY----------------------------- 300
           D+A+ +  ++++K I+PD +TYN LI+G+C                              
Sbjct: 378 DEAECMIKEIQEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTYTSL 437

Query: 301 ------ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
                  N   EA+ L  ++  +GV PD + FN ++D  C N  +  A  LL+ M    V
Sbjct: 438 LHVLSKKNRMKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKV 497

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+  TF+T+M G C  G+V  A+ELF  M+  G K    S+
Sbjct: 498 PPDEVTFNTIMQGHCREGKVEEARELFDEMKRRGIKPDHISF 539



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 150/308 (48%), Gaps = 9/308 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I   M   +  P   T  +L+ G + K    +    +F+ +   GL P    YN LI
Sbjct: 275 ADAILTTMKRQKIEPDSFTYGSLISG-MCKQGRLEEASKIFEEMVQKGLRPSAVIYNTLI 333

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FC  G +         +L+   +P    + SLI  L  E R  EA  +  +++  G  
Sbjct: 334 DGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEKGIS 393

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           P+ ITY+ LING CR  +   A  L +EM A+G        KP   TYT+++  L K+  
Sbjct: 394 PDAITYNILINGYCRCANAKKAFLLHDEMLASG-------IKPTKKTYTSLLHVLSKKNR 446

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A +LF ++  + + PD + +N+LI G C  ++   A  LL +M    V PD VTFN 
Sbjct: 447 MKEADDLFKKITSEGVLPDAIMFNALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNT 506

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           IM   C+ GK++EA  L + M  RG+ P+  +F+TL+ G+   G +  A  +   M   G
Sbjct: 507 IMQGHCREGKVEEARELFDEMKRRGIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTG 566

Query: 389 CKHTVFSY 396
              TV +Y
Sbjct: 567 FNPTVLTY 574



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F+ L          D     F  +   G+ P + T N L++ F K+ R    +V+   + 
Sbjct: 154 FDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMF 213

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R         F  +I  LC E ++ +A      ++  G KPN++TY+T+++G C +G   
Sbjct: 214 RLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVHGYCSSGRVE 273

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +   M           +P++ TY ++I G+CK+G +++A ++F +M  K + P  V
Sbjct: 274 AADAILTTMKRQK------IEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAV 327

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            YN+LI GFC   + + A+    EM+ +G+ P + T+N ++  L    + DEA  +++ +
Sbjct: 328 IYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEI 387

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +G++P+  T++ L++G+C       A  L   M + G K T  +Y
Sbjct: 388 QEKGISPDAITYNILINGYCRCANAKKAFLLHDEMLASGIKPTKKTY 434



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 69/220 (31%), Positives = 120/220 (54%), Gaps = 6/220 (2%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           ++ F  LIK  C  +R  EA   F  +K  G  P + T ++L++   +   T  A  L+ 
Sbjct: 151 SIVFDYLIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYA 210

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM      F +  K +  T+  +I+ LCKEG + KAK+    M+   + P++VTYN+++H
Sbjct: 211 EM------FRLRIKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETSGVKPNIVTYNTIVH 264

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+C +     A+ +L  M  Q ++PD  T+  ++  +CK G+++EAS++ E M+ +G+ P
Sbjct: 265 GYCSSGRVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRP 324

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++TL+DGFC  G ++ A      M   G   T+ +Y
Sbjct: 325 SAVIYNTLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTY 364



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 84/309 (27%), Positives = 140/309 (45%), Gaps = 12/309 (3%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL---FPDLYTYNI 147
            C+   ++   PSP P  + +LL   L      +++  +F+ L ++     F     ++ 
Sbjct: 100 LCLAIVIVARLPSPKP--ALHLLRQALGGGT-TNSIREIFEFLAASRDRLGFKSSIVFDY 156

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C M R    F     +      P      SL+      +R   A  L+ ++    
Sbjct: 157 LIKSCCDMNRADEAFECFYTMKEKGVLPTIETCNSLLSLFLKLNRTEAAWVLYAEMFRLR 216

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K +V T++ +IN LC+ G    A +    M       GV  KPN VTY TI+ G C  G
Sbjct: 217 IKSSVYTFNIMINVLCKEGKLKKAKDFVGHMETS----GV--KPNIVTYNTIVHGYCSSG 270

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A  +   MK + I PD  TY SLI G C      EA+ +  EM+ +G++P  V +N
Sbjct: 271 RVEAADAILTTMKRQKIEPDSFTYGSLISGMCKQGRLEEASKIFEEMVQKGLRPSAVIYN 330

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  C  G +D AS   + M+ +G++P  ST+++L+    +  R + A+ +   ++  
Sbjct: 331 TLIDGFCNKGNLDMASAYKDEMLKKGISPTMSTYNSLIHALFMEQRTDEAECMIKEIQEK 390

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 391 GISPDAITY 399



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/216 (29%), Positives = 97/216 (44%), Gaps = 34/216 (15%)

Query: 89  EAFCIFDYML--NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +AF + D ML   ++P+    TS   L   L+K         LFK++ S G+ PD   +N
Sbjct: 414 KAFLLHDEMLASGIKPTKKTYTS---LLHVLSKKNRMKEADDLFKKITSEGVLPDAIMFN 470

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI+  C    V   F +L  + R    PD V F ++++G C E ++ EA  LF ++K  
Sbjct: 471 ALIDGHCSNSNVKGAFELLKDMDRMKVPPDEVTFNTIMQGHCREGKVEEARELFDEMKRR 530

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVCK------- 250
           G KP+ I+++TLI+G  R G    A  +  EM +          N     +CK       
Sbjct: 531 GIKPDHISFNTLISGYSRRGDIKDAFRVRNEMLDTGFNPTVLTYNALVQGLCKNQEGDLA 590

Query: 251 -------------PNTVTYTTIIDGLCKEGFVDKAK 273
                        P+  TY T+I+G+ K    D+ K
Sbjct: 591 EELLKEMVSKGMTPDDTTYFTLIEGIAKVNIPDENK 626


>gi|297793693|ref|XP_002864731.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310566|gb|EFH40990.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 732

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 152/284 (53%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  + +    L +    +    +F+ +   G+ P+LYTY+ +I+ +CK G +   + +
Sbjct: 266 PNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMIDGYCKTGNLRQAYGL 325

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              IL +   P+ V F +L+ G C    ++ A +LF  +  FG  PN+  Y+ LI+G C+
Sbjct: 326 YKEILVAELLPNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCK 385

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G+ + A+ L  EM + N        P+  TYT +I+GLC E  + +A  LF +MK++ I
Sbjct: 386 SGNMLEAMGLLSEMESLN------LSPDVFTYTILINGLCTEERLAEANRLFQRMKNERI 439

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  VTYNSLIHGFC   +  +A  L  EM   GV+P+++TF+ ++D  CK   +  A  
Sbjct: 440 FPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITFSTLIDGYCKVRNIKAAMG 499

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M ++G+ P+  T++TL+D       +  A  L+  M   G
Sbjct: 500 LYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAG 543



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 158/297 (53%), Gaps = 7/297 (2%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           MR SP       +L G L + + +D+V   ++ + S GL PD++ Y++L  C  K G  S
Sbjct: 192 MRCSPDSKACLAILNG-LVRRRRFDSVWVDYQLMISRGLVPDVHIYSVLFQCCFKQGFPS 250

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +L  +      P+   +T  I+ LC E+++ EA  +F  +K  G  PN+ TYS +I
Sbjct: 251 KKEKLLDEMTSLGVKPNVYIYTIYIRDLCRENKMEEAEKMFELMKIHGVVPNLYTYSAMI 310

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +G C+TG+   A  L++E+            PN V + T++DG CK   +  A+ LF+ M
Sbjct: 311 DGYCKTGNLRQAYGLYKEILVAE------LLPNVVVFGTLVDGFCKARELVAARSLFVHM 364

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
               ++P++  YN LIHG C + +  EA  LL EM    + PDV T+ ++++ LC   ++
Sbjct: 365 VKFGVDPNLYVYNCLIHGQCKSGNMLEAMGLLSEMESLNLSPDVFTYTILINGLCTEERL 424

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            EA+RL + M    + P++ T+++L+ GFC    +  A +L   M S G +  + ++
Sbjct: 425 AEANRLFQRMKNERIFPSSVTYNSLIHGFCKEYNIEKALDLCSEMTSSGVEPNIITF 481



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 143/327 (43%), Gaps = 49/327 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  F  L     K +      SLF  +   G+ P+LY YN LI+  CK G +     +
Sbjct: 336 PNVVVFGTLVDGFCKARELVAARSLFVHMVKFGVDPNLYVYNCLIHGQCKSGNMLEAMGL 395

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     +PD   +T LI GLC E R+ EA  LF ++K     P+ +TY++LI+G C+
Sbjct: 396 LSEMESLNLSPDVFTYTILINGLCTEERLAEANRLFQRMKNERIFPSSVTYNSLIHGFCK 455

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL+L  EM +     GV  +PN +T++T+IDG CK   +  A  L+ +M  K I
Sbjct: 456 EYNIEKALDLCSEMTSS----GV--EPNIITFSTLIDGYCKVRNIKAAMGLYFEMTIKGI 509

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD---------------------- 322
            PDVVTY +LI       +  EA  L  +M++ G+ P+                      
Sbjct: 510 VPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSDAID 569

Query: 323 ---------------------VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
                                 V F  +++ LC+NG +  ASR    M   GV P+  ++
Sbjct: 570 FYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQNGYILRASRFFSDMKSGGVTPDIWSY 629

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMG 388
            +++       R+     L   M   G
Sbjct: 630 VSMLKAHLREKRITDTMMLHCDMIKTG 656



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/292 (24%), Positives = 134/292 (45%), Gaps = 10/292 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M N R  P  +T  +L+ G   K  + +  L L   + S+G+ P++ T++ L
Sbjct: 426 EANRLFQRMKNERIFPSSVTYNSLIHG-FCKEYNIEKALDLCSEMTSSGVEPNIITFSTL 484

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK+  +     +   +      PD V +T+LI     E+ + EA  L++ +   G 
Sbjct: 485 IDGYCKVRNIKAAMGLYFEMTIKGIVPDVVTYTTLIDAHFKEANMKEALRLYSDMLEAGI 544

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKE 266
            PN  T++ L++G  + G    A++ + E         +V +     V +T +I+GLC+ 
Sbjct: 545 HPNDHTFACLVDGFWKEGRLSDAIDFYLENNQAATGKSIVQRSCWKYVGFTCLIEGLCQN 604

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G++ +A   F  MK   + PD+ +Y S++          +   L  +M+  G+ P+++  
Sbjct: 605 GYILRASRFFSDMKSGGVTPDIWSYVSMLKAHLREKRITDTMMLHCDMIKTGILPNLMVN 664

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNT-------STFSTLMDGFCLT 371
            ++     +NG +  A  L     L  +  NT       + F   M G C++
Sbjct: 665 QLLAMFYQENGYLRSACFLTNSSRLGTIFKNTCNSIFLITVFHCKMYGICIS 716


>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
          Length = 1099

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L+K    D + +++  L +  + P++YT+N ++N +CK+G V    + 
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +I+++   PD   +TSLI G C    +  A  +F  +   GC+ N ++Y+ LI+GLC 
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL LF +M   N      C P   TYT +I  L   G   +A  LF +MK+K  
Sbjct: 277 AGRINEALKLFADMTEDN------CCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGC 330

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TY  LI G C  N  +EA  +L EM ++G+ P VVT+N ++D  CK G +D+A  
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+LM      PNT T++ L+ G C   +V+ A  L   M       ++ +Y
Sbjct: 391 ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITY 442



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 150/286 (52%), Gaps = 7/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           NL+ G L +    +  L LF  +      P + TY +LI      GR      +   +  
Sbjct: 269 NLIHG-LCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE 327

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+   +T LI GLC E+++ EA  + +++   G  P+V+TY+ LI+G C+ G    
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  + + M + +      C PNT TY  +I GLCK+  V KA  L  +M ++ ++P ++T
Sbjct: 388 AFEILDLMESNS------CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLIT 441

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YNSLIHG C  ND   A  LL  M + G+ PD  T++V +D LCK G+++EA  L + + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +GV  N   ++ L+DG+C  G+++ A  L   M +  C    ++Y
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ M   +   P + ++ +L   L K    D    +   ++  GL P + TYN L
Sbjct: 317 EALNLFNEM-KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL 375

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK G +   F +L  +  +   P+   +  LI GLC + ++ +A AL  K+     
Sbjct: 376 IDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITY++LI+G C+      A  L   M N NG       P+  TY+  ID LCKEG 
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLM-NENGLV-----PDQWTYSVFIDTLCKEGR 489

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A  LF  +K K +  + V Y +LI G+C     + A  LL  M++    P+  T+NV
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNV 549

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK  KM EAS L+  M+  GV P   T++ L+      G  +HA ++F  M S+G
Sbjct: 550 LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 389 CKHTVFSY 396
            +  V +Y
Sbjct: 610 YQPDVCTY 617



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 147/307 (47%), Gaps = 7/307 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF I D M       P   ++N L   L K +     ++L  ++    L P L TYN 
Sbjct: 386 DDAFEILDLM-ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK+  +   + +L  +  +   PD   ++  I  LC E R+ EA  LF  +KA G
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K N + Y+ LI+G C+ G   VA +L E M N        C PN+ TY  +I+GLCKE 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLND------ACLPNSYTYNVLIEGLCKEK 558

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A  L  +M    + P VVTY  LI        ++ A  +   M+  G QPDV T+ 
Sbjct: 559 KMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYT 618

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             +      G ++E   ++  M   G+ P+  T++ L+DG+   G  + A +    M   
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT 678

Query: 388 GCKHTVF 394
           GCK +++
Sbjct: 679 GCKPSLY 685



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 143/274 (52%), Gaps = 9/274 (3%)

Query: 126 VLSLFKRLNSTGLF---PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           VL +F+++N+ G F   P L  YN ++    K   +     V   +L +  +P+   F +
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           ++ G C    ++EA    +K+   G  P+  TY++LI G CR      A  +F  M    
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                 C+ N V+YT +I GLC+ G +++A +LF  M + N  P V TY  LI+    + 
Sbjct: 260 ------CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  L  EM ++G +P+V T+ V++D LCK  KMDEA ++L  M  +G+ P+  T++
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+DG+C  G ++ A E+   MES  C     +Y
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTY 407



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 143/336 (42%), Gaps = 36/336 (10%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ + + MLN    P   T +N+L   L K K      SL  ++ + G+ P + TY ILI
Sbjct: 528 AYSLLERMLNDACLPNSYT-YNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILI 586

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
               K G   H   V   ++   + PD   +T+ +    ++  + E   +  K+   G  
Sbjct: 587 GEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL 646

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TY+ LI+G  R G T  A +  + M +        CKP+    + +I  L  E  +
Sbjct: 647 PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG------CKPSLYIVSILIKNLSHENRM 700

Query: 270 DKAK-----------------------------ELFLQMKDKNINPDVVTYNSLIHGFCY 300
            + +                             +LF +M +     DV  Y +LI GFC 
Sbjct: 701 KETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQ 760

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                EA  L+  M ++G+ P    +N ++D  CK G   EA RL++ M+  G+ P   +
Sbjct: 761 QERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLES 820

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  L+ G  + G    AK +F  + S G  +   ++
Sbjct: 821 YKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEVAW 856



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 36/327 (11%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   ML M   P  +T + +L G + K   +D  L +F  + S G  PD+ TY   
Sbjct: 562 EASSLVAKMLTMGVKPTVVT-YTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAF 620

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +   G +     V+ ++      PD V +T LI G         A      +   GC
Sbjct: 621 LHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTGC 680

Query: 209 KPNVITYSTLINGL-----------------------------CRTGHTIVALNLFEEMA 239
           KP++   S LI  L                              +T    +AL LFE+M 
Sbjct: 681 KPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIADVWKTLEYEIALKLFEKMV 740

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C  +   Y  +I G C++  +++A+ L   MK++ ++P    YNSL+   C
Sbjct: 741 EHG------CTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCCC 794

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
               + EA  L+  M++ G+ P + ++ +++  L   G  ++A  +   ++  G N +  
Sbjct: 795 KLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGLLSCGYNYDEV 854

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMES 386
            +  L+DG      V+   EL   ME 
Sbjct: 855 AWKVLIDGLLKRDLVDECSELIDIMEE 881



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/165 (25%), Positives = 70/165 (42%), Gaps = 6/165 (3%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           KT  Y+  L LF+++   G   D+  Y  LI  FC+  R+     ++  +     +P   
Sbjct: 725 KTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSED 784

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            + SL+   C      EA  L   +   G  P + +Y  L+ GL   G    A  +F  +
Sbjct: 785 IYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKAVFHGL 844

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            +    +      + V +  +IDGL K   VD+  EL   M++K+
Sbjct: 845 LSCGYNY------DEVAWKVLIDGLLKRDLVDECSELIDIMEEKD 883


>gi|91806021|gb|ABE65739.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 450

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 132/214 (61%), Gaps = 6/214 (2%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
            TP  + F +LI GLC E R++EAAAL  K+   G   +V+TY T++NG+C+ G T  AL
Sbjct: 6   LTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSAL 65

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           NL  +M   +       KP+ V Y+ IID LCK+G    A+ LF +M +K I P+V TYN
Sbjct: 66  NLLSKMEETH------IKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYN 119

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            +I GFC    W++A  LL +M+++ + PDV+TFN ++    K GK+ EA +L + M+ R
Sbjct: 120 CMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHR 179

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            + P+T T+++++ GFC   R + AK +F  M S
Sbjct: 180 CIFPDTVTYNSMIYGFCKHNRFDDAKHMFDLMAS 213



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 152/290 (52%), Gaps = 11/290 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L          +L  ++   GL  D+ TY  ++N  CKMG       +
Sbjct: 8   PVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGDTKSALNL 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  +   PD V ++++I  LC +    +A  LF+++   G  PNV TY+ +I+G C 
Sbjct: 68  LSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCS 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L  +M            P+ +T+  +I    KEG + +A++L  +M  + I
Sbjct: 128 FGRWSDAQRLLRDMIERE------INPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCI 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTYNS+I+GFC  N +++A      M D    PDVVTFN I+D  C+  ++DE  +
Sbjct: 182 FPDTVTYNSMIYGFCKHNRFDDAK----HMFDLMASPDVVTFNTIIDVYCRAKRVDEGMQ 237

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG-CKHTV 393
           LL  +  RG+  NT+T++TL+ GFC    +N A++LF  M S G C  T+
Sbjct: 238 LLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTI 287



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 154/292 (52%), Gaps = 10/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ +   L K  H+     LF  +   G+ P+++TYN +I+ FC  GR S    +
Sbjct: 78  PDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRL 137

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PD + F +LI     E ++ EA  L  ++      P+ +TY+++I G C+
Sbjct: 138 LRDMIEREINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCK 197

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++F+ MA+          P+ VT+ TIID  C+   VD+  +L  ++  + +
Sbjct: 198 HNRFDDAKHMFDLMAS----------PDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGL 247

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  TYN+LIHGFC  ++ N A  L  EM+  GV PD +T N+++   C+N K++EA  
Sbjct: 248 VANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGVCPDTITCNILLYGFCENEKLEEALE 307

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E++ +  ++ +T  ++ ++ G C   +V+ A +LF S+   G +  V +Y
Sbjct: 308 LFEVIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTY 359



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 141/298 (47%), Gaps = 16/298 (5%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR--- 157
           R   P + +FN L     K         L   +    +FPD  TYN +I  FCK  R   
Sbjct: 144 REINPDVLTFNALISASVKEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNRFDD 203

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
             H F ++        +PD V F ++I   C   R+ E   L  ++   G   N  TY+T
Sbjct: 204 AKHMFDLMA-------SPDVVTFNTIIDVYCRAKRVDEGMQLLREISRRGLVANTTTYNT 256

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C   +   A +LF+EM +       VC P+T+T   ++ G C+   +++A ELF 
Sbjct: 257 LIHGFCEVDNLNAAQDLFQEMISHG-----VC-PDTITCNILLYGFCENEKLEEALELFE 310

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++   I+ D V YN +IHG C  +  +EA  L   +   GV+PDV T+NV++   C   
Sbjct: 311 VIQMSKIDLDTVAYNIIIHGMCKGSKVDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKS 370

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            + +A+ L   M   G  P+ ST++TL+ G    G ++ + EL   M S G     F+
Sbjct: 371 AISDANVLFHKMKDNGHEPDNSTYNTLIRGCLKAGEIDKSIELISEMRSNGFSGDAFT 428



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 135/278 (48%), Gaps = 11/278 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML+    P  +T  ++++G   K   +D    +F  + S    PD+ T+N +
Sbjct: 168 EAEKLCDEMLHRCIFPDTVTYNSMIYG-FCKHNRFDDAKHMFDLMAS----PDVVTFNTI 222

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C+  RV  G  +L  I R     +   + +LI G C    +  A  LF ++ + G 
Sbjct: 223 IDVYCRAKRVDEGMQLLREISRRGLVANTTTYNTLIHGFCEVDNLNAAQDLFQEMISHGV 282

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+ IT + L+ G C       AL LFE +             +TV Y  II G+CK   
Sbjct: 283 CPDTITCNILLYGFCENEKLEEALELFEVIQMSKIDL------DTVAYNIIIHGMCKGSK 336

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD+A +LF  +    + PDV TYN +I GFC  +  ++AN L  +M D G +PD  T+N 
Sbjct: 337 VDEAWDLFCSLPIHGVEPDVQTYNVMISGFCGKSAISDANVLFHKMKDNGHEPDNSTYNT 396

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++    K G++D++  L+  M   G + +  T   + D
Sbjct: 397 LIRGCLKAGEIDKSIELISEMRSNGFSGDAFTIKMVAD 434



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/118 (33%), Positives = 62/118 (52%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M +  + P V+T+N+LI+G C      EA  L+ +M+ +G+  DVVT+  I++ +CK G 
Sbjct: 1   MVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGLHIDVVTYGTIVNGMCKMGD 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              A  LL  M    + P+   +S ++D  C  G  + A+ LF  M   G    VF+Y
Sbjct: 61  TKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQYLFSEMLEKGIAPNVFTY 118


>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
 gi|194702156|gb|ACF85162.1| unknown [Zea mays]
 gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
          Length = 567

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L     K   Y   + L   ++  G  PD+ TYN+++N  C+ GRV      
Sbjct: 199 PDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEF 258

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ V++  ++KGL    R  +A  L  ++   GC PNV+T++ LI+ LCR
Sbjct: 259 LKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCR 318

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + E+M     ++G  C PN+++Y  ++   CK+  + KA E    M  +  
Sbjct: 319 RGLVEPAMEVLEQMP----QYG--CTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGC 372

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+V+YN+L+   C   + + A  LL ++ D+G  P ++++N ++D L K GK  EA  
Sbjct: 373 YPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALE 432

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M  +G+ P+  T+ST+  G C   R+  A   F  ++ MG + T   Y
Sbjct: 433 LLDEMTSKGLQPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALY 484



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 85/284 (29%), Positives = 148/284 (52%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L + +   G  P++ T+N+LI+  C+ G V     V
Sbjct: 269 PNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEV 328

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ +   TP+++++  L+   C + +I +A      + + GC P++++Y+TL+  LCR
Sbjct: 329 LEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCR 388

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   VA+ L  ++ +        C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 389 NGEVDVAIELLHQLKDKG------CSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGL 442

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C  +   EA     ++ D G++P    +N I+  LCK  +   A  
Sbjct: 443 QPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAID 502

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   MI  G  PN ST++ L++G    G V  A+ELF  + S G
Sbjct: 503 LFAYMISSGCMPNESTYTILVEGLAYEGLVKEARELFAQLCSRG 546



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 146/295 (49%), Gaps = 6/295 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N L   L         L++ + +   G  PD+ TY IL+   CK       
Sbjct: 161 PVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQA 220

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  +      PD V +  ++ G+C E R+ +A      L ++GC+PN ++Y+ ++ G
Sbjct: 221 MKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKG 280

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L        A  L EEMA+        C PN VT+  +I  LC+ G V+ A E+  QM  
Sbjct: 281 LFTAERWEDAEKLMEEMAHKG------CPPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQ 334

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+ ++YN L+H FC     ++A   +  M+ +G  PD+V++N ++  LC+NG++D 
Sbjct: 335 YGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEVDV 394

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  LL  +  +G +P   +++T++DG    G+   A EL   M S G +  + +Y
Sbjct: 395 AIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITY 449



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 80/257 (31%), Positives = 134/257 (52%), Gaps = 9/257 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+  YN ++  +C  G++     ++  +      PDA  + +LI+GLC   R   A A+
Sbjct: 132 PDVMVYNAMVAGYCGAGQLDAARRLVADMP---VEPDAYTYNTLIRGLCGRGRTSNALAV 188

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              +   GC P+V+TY+ L+   C+      A+ L +EM +        C P+ VTY  +
Sbjct: 189 LEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKG------CAPDIVTYNVV 242

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++G+C+EG V+ A E    +      P+ V+YN ++ G   A  W +A  L+ EM  +G 
Sbjct: 243 LNGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGC 302

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVTFN+++  LC+ G ++ A  +LE M   G  PN+ +++ L+  FC   +++ A E
Sbjct: 303 PPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAME 362

Query: 380 LFVSMESMGCKHTVFSY 396
               M S GC   + SY
Sbjct: 363 FVELMVSRGCYPDIVSY 379



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 134/253 (52%), Gaps = 10/253 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG-- 161
           PP + +FN+L   L +    +  + + +++   G  P+  +YN L++ FCK  ++     
Sbjct: 303 PPNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAME 362

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           FV L  + R C+ PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+T+I+G
Sbjct: 363 FVEL-MVSRGCY-PDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDG 420

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L + G T  AL L +EM +         +P+ +TY+TI  GLC+E  +++A   F +++D
Sbjct: 421 LTKAGKTKEALELLDEMTSKG------LQPDIITYSTIASGLCREDRIEEAVRTFCKVQD 474

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             I P    YN+++ G C   + + A  L   M+  G  P+  T+ ++++ L   G + E
Sbjct: 475 MGIRPTAALYNAILLGLCKRRETHNAIDLFAYMISSGCMPNESTYTILVEGLAYEGLVKE 534

Query: 342 ASRLLELMILRGV 354
           A  L   +  RGV
Sbjct: 535 ARELFAQLCSRGV 547


>gi|410109939|gb|AFV61049.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rehmannii]
          Length = 420

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K +++  V   ++ +   G    LY +NIL++ FCK G +    +V   I +    P 
Sbjct: 106 LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPS 165

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 166 VVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFD 225

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  + + PD++TYN+L++
Sbjct: 226 EMLVK----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVY 279

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D N+A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 280 GLCKKGDLNQAHGLIDEMXXKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL 339

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 340 DDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTY 379



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 140/263 (53%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK   +     +
Sbjct: 164 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMRASGVQPDVYTYSVLINGLCKESXMDDANEL 223

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TL+ GLC+
Sbjct: 224 FDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLLPDJITYNTLVYGLCK 283

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM           KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 284 KGDLNQAHGLIDEMXXKG------LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 337

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 338 RLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 397

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P   T++ LM+G
Sbjct: 398 LLKEMQRNGHVPXVVTYNVLMNG 420



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K         +F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 128 PASLYFFNILMHRFCKDGDIRVAPLVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 187

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES + +A  LF ++   G  PN +T++TLI+G C
Sbjct: 188 LKSAMRASGVQPDVYTYSVLINGLCKESXMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 247

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M            P+ +TY T++ GLCK+G +++A  L  +M  K 
Sbjct: 248 KNGRVDLAMEIYKQM------LSQXLLPDJITYNTLVYGLCKKGDLNQAHGLIDEMXXKG 301

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 302 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSXDAE 361

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G    V +Y
Sbjct: 362 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPXVVTY 414


>gi|410109887|gb|AFV61023.1| pentatricopeptide repeat-containing protein 11, partial [Junellia
           succulentifolia]
          Length = 429

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 115 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPS 174

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+         LF+
Sbjct: 175 VVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFD 234

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD+VTYN+LI+
Sbjct: 235 EMLD----XGLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIY 288

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A      MI   +  
Sbjct: 289 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRL 348

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 349 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 388



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 146/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    +    L K + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 173 PSVVSFNTLMNGYIKLGDLNEXFRLKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNEL 232

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P+++TY+TLI GLC+
Sbjct: 233 FDEMLDXGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLVTYNTLIYGLCK 292

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 293 KGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENI 346

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++P++ T+ +I++E CK G +   S+
Sbjct: 347 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 406

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           L++ M   G  P+  T++ LM+G
Sbjct: 407 LMKEMQRDGYVPSVVTYNVLMNG 429



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++  F 
Sbjct: 137 PASLYFFNILMHSFCKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEXFR 196

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +   LF ++   G  PN +T++TLI+G C
Sbjct: 197 LKKAMQASGVQPDVYTYSVLINGLCKESKMDDXNELFDEMLDXGLVPNGVTFTTLIDGHC 256

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ VTY T+I GLCK+G + +A++L  +M  K 
Sbjct: 257 KNGRVDLAMEIYKQMLSQS------LSPDLVTYNTLIYGLCKKGDLKQAQDLIDEMSMKG 310

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 311 LKPDKITYTTLIDGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAE 370

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 371 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTY 423



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 264 AMEIYKQMLSQSLSPDLVTYNTLIYG-LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 322

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 323 DGSCKEGDLETAFEYRXRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 382

Query: 210 P-----------------------------------NVITYSTLING 221
           P                                   +V+TY+ L+NG
Sbjct: 383 PEIGTYTMIINEFCKKGDVWTGSKLMKEMQRDGYVPSVVTYNVLMNG 429


>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
 gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
          Length = 382

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/295 (34%), Positives = 155/295 (52%), Gaps = 11/295 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   ++L   L K K    VL  F+ +   G+  D   Y +L++   K  R+     +
Sbjct: 11  PNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKEKRLDQALAI 70

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ V + SLI GLC  +    A  LF  +K+  C P ++TY+TL++GL  
Sbjct: 71  LHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSP-LVTYNTLLDGLFW 129

Query: 225 TG--HTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           TG   + +A+ L E M A G       C P+ +T T ++DGLCKE  V  A E+  +M D
Sbjct: 130 TGKLESAMAVELLESMKARG-------CSPDVITSTILVDGLCKESKVAAAWEVLCEMLD 182

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P++VT  SL+HG C A   ++A  L+ +M  +G  P+VVT+  ++D LCK G++ +
Sbjct: 183 AGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKD 242

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L E+M   G + +  T+STL+DG C  GRV+ A  L   M  MG   +  +Y
Sbjct: 243 AGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMGTPSSTLTY 297



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/320 (30%), Positives = 151/320 (47%), Gaps = 30/320 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I   M +     P + ++N L   L K    D    LF+ + S    P L TYN 
Sbjct: 65  DQALAILHEMRD-HGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSP-LVTYNT 122

Query: 148 LINCFCKMGRVSHGFVVLGRIL-----RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           L++     G++     V   +L     R C +PD +  T L+ GLC ES++  A  +  +
Sbjct: 123 LLDGLFWTGKLESAMAV--ELLESMKARGC-SPDVITSTILVDGLCKESKVAAAWEVLCE 179

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           +   GC PN++T  +L++GLCR      AL L  +M          C PN VTY T+IDG
Sbjct: 180 MLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRG------CTPNVVTYGTLIDG 233

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G V  A  L+  M     + DVVTY++LI G C     +EA+ LL  M+  G    
Sbjct: 234 LCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMGTPSS 293

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMIL------RGVNPNTSTFSTLMDGFCLTGRVNH 376
            +T+N+   E    GKM +   L + M +      +G   +    +TL+D +   G +  
Sbjct: 294 TLTYNLQHFE----GKMVKVDSLEKGMAIHIQAAEKGYKRDDFLSNTLVDMYAKCGSMVE 349

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+ +F SM      H++ S+
Sbjct: 350 AERVFRSMPC----HSLVSW 365



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/192 (35%), Positives = 101/192 (52%), Gaps = 9/192 (4%)

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++++    PN+   S LI+GLC+   +I  L  F  M       G+V   +TV YT +
Sbjct: 1   FDEMRSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGA----GIV--ADTVIYTVL 54

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GL KE  +D+A  +  +M+D    P+VVTYNSLI G C  N+ + A  L   M     
Sbjct: 55  LSGLWKEKRLDQALAILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVEC 114

Query: 320 QPDVVTFNVIMDELCKNGKMDE--ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            P +VT+N ++D L   GK++   A  LLE M  RG +P+  T + L+DG C   +V  A
Sbjct: 115 SP-LVTYNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAA 173

Query: 378 KELFVSMESMGC 389
            E+   M   GC
Sbjct: 174 WEVLCEMLDAGC 185


>gi|255660788|gb|ACU25563.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 418

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMIDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   ++ +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMIDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 603

 Score =  173 bits (439), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 162/322 (50%), Gaps = 34/322 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L G   K+   D  L + +R++   + PD+ TYN ++   C  G++     V
Sbjct: 175 PDVITYNVLIGGYCKSGEIDKALQVLERMS---VAPDVVTYNTILRSLCDSGKLKEAMEV 231

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L R + R C+ PD + +T LI+  C +S + +A  L  +++  GCKP+V+TY+ LING+C
Sbjct: 232 LDRQMQRECY-PDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGIC 290

Query: 224 RTGHTIVALNLFEEMANGNGKFGVV-----------------------------CKPNTV 254
           + G    A+     M     +  V+                             C P+ V
Sbjct: 291 KEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVV 350

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+  +I+ LC++  + +A ++  +M      P+ ++YN L+HGFC     + A   L  M
Sbjct: 351 TFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIM 410

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + +G  PD+VT+N ++  LCK+GK D A  +L  +  +G +P   T++T++DG    G+ 
Sbjct: 411 VSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKT 470

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
            +A EL   M   G K  + +Y
Sbjct: 471 EYAAELLEEMRRKGLKPDIITY 492



 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 118/425 (27%), Positives = 197/425 (46%), Gaps = 49/425 (11%)

Query: 8   CSFHFTSISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTV--KDRAS 65
           CSFH   I+ + +  N + S P    P SS+S +      T ++ +   R++   K  AS
Sbjct: 11  CSFHPFHITRARVSDN-TVSRPFVLSPASSVSHHFTKLKATRSRKRLENRVSAVSKSEAS 69

Query: 66  LEQFLKERCKSSGQGDITAI-----TPN---------------------------EAFCI 93
                 ++  S+  GD+  I     +PN                           E    
Sbjct: 70  GMNGRLQQIVSTPNGDLNGIGMESSSPNGVNGSRSFEEFASNIHLRKLVRNGELEEGLKF 129

Query: 94  FDYMLNMRPSPPPLTSFNLLFG-CLA-KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
            + M+     P  +   +L+ G C + KT+    ++ +   L ++G  PD+ TYN+LI  
Sbjct: 130 LERMIYQGDIPDVIACTSLIRGFCRSGKTRKATRIMEI---LENSGAVPDVITYNVLIGG 186

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +CK G +     VL R+      PD V + ++++ LC   ++ EA  +  +     C P+
Sbjct: 187 YCKSGEIDKALQVLERM---SVAPDVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPD 243

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           VITY+ LI   C       A+ L +EM          CKP+ VTY  +I+G+CKEG +D+
Sbjct: 244 VITYTILIEATCNDSGVGQAMKLLDEMRKKG------CKPDVVTYNVLINGICKEGRLDE 297

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A +    M      P+V+T+N ++   C    W +A  LL +M+ +G  P VVTFN++++
Sbjct: 298 AIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILIN 357

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+   +  A  +LE M   G  PN+ +++ L+ GFC   +++ A E    M S GC  
Sbjct: 358 FLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYP 417

Query: 392 TVFSY 396
            + +Y
Sbjct: 418 DIVTY 422



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D  +  R   P + ++ +L             + L   +   G  PD+ TYN+L
Sbjct: 227 EAMEVLDRQMQ-RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVL 285

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK GR+      L  +      P+ +    +++ +C+  R M+A  L   +   GC
Sbjct: 286 INGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRWMDAERLLADMLRKGC 345

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+T++ LIN LCR      A+++ E+M     K G  C PN+++Y  ++ G C+E  
Sbjct: 346 SPSVVTFNILINFLCRKRLLGRAIDVLEKMP----KHG--CMPNSLSYNPLLHGFCQEKK 399

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A E    M  +   PD+VTYN+L+   C     + A  +L ++  +G  P ++T+N 
Sbjct: 400 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNT 459

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D L K GK + A+ LLE M  +G+ P+  T+STL+ G    G+V+ A ++F  ME + 
Sbjct: 460 VIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLS 519

Query: 389 CKHTVFSY 396
            K +  +Y
Sbjct: 520 IKPSAVTY 527



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 167/358 (46%), Gaps = 27/358 (7%)

Query: 49  TAKLKESLRLTVKDRASLEQ----------FLKERCKSSGQGDITAITPNEAFCIFDYML 98
           + KLKE++   V DR    +           ++  C  SG G        +A  + D M 
Sbjct: 222 SGKLKEAME--VLDRQMQRECYPDVITYTILIEATCNDSGVG--------QAMKLLDEM- 270

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             +   P + ++N+L   + K    D  +     +   G  P++ T+NI++   C  GR 
Sbjct: 271 RKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRW 330

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +L  +LR   +P  V F  LI  LC +  +  A  +  K+   GC PN ++Y+ L
Sbjct: 331 MDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPL 390

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++G C+      A+   E M +        C P+ VTY T++  LCK+G  D A E+  Q
Sbjct: 391 LHGFCQEKKMDRAIEYLEIMVSRG------CYPDIVTYNTLLTALCKDGKADAAVEILNQ 444

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           +  K  +P ++TYN++I G         A  LL EM  +G++PD++T++ ++  L   GK
Sbjct: 445 LSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGK 504

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DEA ++   M    + P+  T++ +M G C   + + A +    M   GCK T  +Y
Sbjct: 505 VDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATY 562



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 135/264 (51%), Gaps = 6/264 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N++   +  T  +     L   +   G  P + T+NILIN  C+   +     V
Sbjct: 312 PNVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDV 371

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ +    P+++++  L+ G C E ++  A      + + GC P+++TY+TL+  LC+
Sbjct: 372 LEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 431

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ +  ++++        C P  +TY T+IDGL K G  + A EL  +M+ K +
Sbjct: 432 DGKADAAVEILNQLSSKG------CSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGL 485

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY++L+ G       +EA  +  +M    ++P  VT+N IM  LCK  +   A  
Sbjct: 486 KPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAID 545

Query: 345 LLELMILRGVNPNTSTFSTLMDGF 368
            L  M+ +G  P  +T++ L++G 
Sbjct: 546 FLAYMVEKGCKPTKATYTILIEGI 569


>gi|255660778|gb|ACU25558.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
          Length = 418

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|357130032|ref|XP_003566662.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
           distachyon]
          Length = 859

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 150/291 (51%), Gaps = 9/291 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R +P  + ++ +L  C  + +  D   + F RL   GL       N  + C C   R   
Sbjct: 150 RVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDE 209

Query: 161 GF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYST 217
              V+L R+      P+A+++ ++IK LC +SR  EA  +  ++   G  C P+V++++T
Sbjct: 210 AVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNT 269

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I+G  + G    A NL  EM           +P+ VTY +I+D LCK   +DKA+ +  
Sbjct: 270 VIHGFFKQGEVSKACNLINEMVQKG------VEPDVVTYNSIVDALCKARAMDKAELVLR 323

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           QM DK + PD +TY ++IHG+  +  W E+  +  +M  +G+ P +VTFN  M  LCK+G
Sbjct: 324 QMVDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHG 383

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  +A  + + M  +G  P+  ++S L+ G+   GR      LF SM   G
Sbjct: 384 RSKDAEEIFQYMTTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKG 434



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 157/304 (51%), Gaps = 6/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF YM   +   P L S+++L    A    +  + +LF  +   G+  + + +NILI+  
Sbjct: 391 IFQYM-TTKGHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAH 449

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K G +    +V   +      PD V +++LI   C   R+ +A   F+++ + G +PN 
Sbjct: 450 AKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNT 509

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y +LI+G C  G  + A  L  EM +       + +PN V +++II  LC EG V  A
Sbjct: 510 VVYHSLIHGFCMHGDLVKAKELVSEMMSKG-----IPRPNIVFFSSIIHSLCNEGRVMDA 564

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            ++F  +      P +VT+NSLI G+C      +A  +L  M+  G++PDVVT+N ++  
Sbjct: 565 HDVFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSG 624

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            CK+GK+D+   L   M+ + V P T T+S ++DG    GR + AK++F  M   G    
Sbjct: 625 YCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVD 684

Query: 393 VFSY 396
           + +Y
Sbjct: 685 IDTY 688



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 162/322 (50%), Gaps = 18/322 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTGLFP 140
           ++A  +FD +L  + +P    + N     LA+     +       VL+LF R+      P
Sbjct: 91  DDAHHLFDELLR-QGTPVHNPALNGFLAALARAPDSVSCSNGPALVLALFNRICREEAGP 149

Query: 141 -----DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
                 ++TY IL++C C+  R   G     R+LR+      +   + +K LC   R  E
Sbjct: 150 RVAPLSVHTYGILMDCCCRARRPDLGPAFFARLLRAGLRTRTIEANTFLKCLCHAKRTDE 209

Query: 196 AA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           A   L  ++   GC PN I+Y+T+I  LC    +  AL++ + MA   G+    C P+ V
Sbjct: 210 AVDVLLHRMSDLGCVPNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGR----CSPDVV 265

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           ++ T+I G  K+G V KA  L  +M  K + PDVVTYNS++   C A   ++A  +L +M
Sbjct: 266 SFNTVIHGFFKQGEVSKACNLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQM 325

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +D+GV+PD +T+  I+     +G   E++++   M  +G+ P   TF++ M   C  GR 
Sbjct: 326 VDKGVEPDGLTYTAIIHGYSCSGHWKESAKMFRKMTSKGLIPGIVTFNSFMSSLCKHGRS 385

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+E+F  M + G    + SY
Sbjct: 386 KDAEEIFQYMTTKGHMPDLVSY 407



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 149/282 (52%), Gaps = 7/282 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+L    AK    D  + +F  +   G+ PD+ TY+ LI+ FC+MGR++       +++
Sbjct: 442 FNILISAHAKRGMMDEAMLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMI 501

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLINGLCRTGHT 228
                P+ V + SLI G C    +++A  L +++ + G  +PN++ +S++I+ LC  G  
Sbjct: 502 SIGLEPNTVVYHSLIHGFCMHGDLVKAKELVSEMMSKGIPRPNIVFFSSIIHSLCNEGRV 561

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A ++F      N    +  +P  VT+ ++IDG C  G ++KA  +   M    I PDV
Sbjct: 562 MDAHDVF------NLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDV 615

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+L+ G+C +   ++   L  EM+ + V+P  VT+++++D L   G+   A ++   
Sbjct: 616 VTYNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHE 675

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           MI  G   +  T+  L+ G C     + A  LF  + +M CK
Sbjct: 676 MIDSGTAVDIDTYKILLKGLCRNDLTDEAITLFHKLGAMDCK 717



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 147/294 (50%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGF 162
           P   S+N +   L         L + +R+   G    PD+ ++N +I+ F K G VS   
Sbjct: 225 PNAISYNTVIKSLCGDSRSQEALDMVQRMAKEGGRCSPDVVSFNTVIHGFFKQGEVSKAC 284

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            ++  +++    PD V + S++  LC    + +A  +  ++   G +P+ +TY+ +I+G 
Sbjct: 285 NLINEMVQKGVEPDVVTYNSIVDALCKARAMDKAELVLRQMVDKGVEPDGLTYTAIIHGY 344

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
             +GH   +  +F +M +     G++  P  VT+ + +  LCK G    A+E+F  M  K
Sbjct: 345 SCSGHWKESAKMFRKMTSK----GLI--PGIVTFNSFMSSLCKHGRSKDAEEIFQYMTTK 398

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              PD+V+Y+ L+HG+     + + N L   M D+G+  +   FN+++    K G MDEA
Sbjct: 399 GHMPDLVSYSILLHGYATEGRFADMNNLFHSMADKGIVANCHCFNILISAHAKRGMMDEA 458

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   M  +GV P+  T+STL+  FC  GR+  A E F  M S+G +     Y
Sbjct: 459 MLVFTEMQGQGVRPDVVTYSTLISAFCRMGRLADAMEKFSQMISIGLEPNTVVY 512



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 116/249 (46%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +F  +   G  P + T+N LI+ +C +G++   F VL  ++     PD V + +L+ G C
Sbjct: 567 VFNLVIHIGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTLVSGYC 626

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              +I +   LF ++     KP  +TYS +++GL   G T  A  +F EM +      + 
Sbjct: 627 KSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGTAVDID 686

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  ++ GLC+    D+A  LF ++   +   D+   N++I+         EAN
Sbjct: 687 ------TYKILLKGLCRNDLTDEAITLFHKLGAMDCKFDITILNTVINALYKVRRREEAN 740

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L   +   G+ P+V T+ V++  L K G ++EA  +   M   G  P++   + ++   
Sbjct: 741 DLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLNDIIRML 800

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 801 LQKGDIVKA 809



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 127/285 (44%), Gaps = 7/285 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ ++++    P + +FN L          +    +   + S G+ PD+ TYN L
Sbjct: 563 DAHDVFNLVIHI-GDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMVSVGIEPDVVTYNTL 621

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +CK G++  G ++   +L     P  V ++ ++ GL    R   A  +F ++   G 
Sbjct: 622 VSGYCKSGKIDDGLILFREMLHKKVKPTTVTYSIVLDGLFHAGRTSAAKKMFHEMIDSGT 681

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ TY  L+ GLCR   T  A+ LF ++        + CK +     T+I+ L K   
Sbjct: 682 AVDIDTYKILLKGLCRNDLTDEAITLFHKLG------AMDCKFDITILNTVINALYKVRR 735

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++A +LF  +    + P+V TY  +IH         EA+ +   M   G  P     N 
Sbjct: 736 REEANDLFAAISTSGLVPNVSTYGVMIHNLLKEGSVEEADTMFSSMEKSGCAPSSRLLND 795

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           I+  L + G + +A   +  +    ++   ST S LM  F   G+
Sbjct: 796 IIRMLLQKGDIVKAGYYMSKVDGTIISLEASTTSLLMSLFSSKGK 840


>gi|297746120|emb|CBI16176.3| unnamed protein product [Vitis vinifera]
          Length = 819

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 17/302 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P      NL+ G L K  +  +   L  ++   G+ P L+ YN LIN  CK G++     
Sbjct: 318 PSEAAVSNLVDG-LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAES 376

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      P+ V ++ LI   C   ++  A     K+   G K  V  YS+LI+G C
Sbjct: 377 LFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHC 436

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           + G    A +LF+EM ANG        KPN V YT++I G CKEG +  A  L+ +M  K
Sbjct: 437 KLGKLRAAKSLFDEMIANG-------LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGK 489

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            I+P+  T+ +LI G C+AN   EAN L  EM++  V P+ VT+NV+++  CK G    A
Sbjct: 490 GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRA 549

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM--------ESMGCKHTVF 394
             LL+ M+ +G+ P+T T+  L+ G C TGRV+ A+E    +        E  GC   V 
Sbjct: 550 FELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEIEGCLPNVV 609

Query: 395 SY 396
           +Y
Sbjct: 610 TY 611



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/284 (34%), Positives = 150/284 (52%), Gaps = 14/284 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   + K    D   SLF  +   GLFP+  TY+ILI+ FCK G++      
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG++           ++SLI G C   ++  A +LF ++ A G KPNV+ Y++LI+G C+
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L+ EM  G G       PNT T+T +I GLC    + +A +LF +M + N+
Sbjct: 473 EGELHNAFRLYHEMT-GKG-----ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNV 526

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN LI G C   +   A  LL EM+++G+ PD  T+  ++  LC  G++ EA  
Sbjct: 527 IPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEARE 586

Query: 345 LL--------ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +        +L  + G  PN  T++ L++G C  G ++ A+ L
Sbjct: 587 FMNDLQGEQQKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELL 630



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 108/320 (33%), Positives = 152/320 (47%), Gaps = 22/320 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF ++  M     SP   T F  L   L           LF  +    + P+  TYN+
Sbjct: 477 HNAFRLYHEMTGKGISPNTYT-FTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNV 535

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF- 206
           LI   CK G     F +L  ++     PD   +  LI GLC+  R+ EA      L+   
Sbjct: 536 LIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQGEQ 595

Query: 207 -------GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
                  GC PNV+TY+ LINGLC+ G    A  L  EM   N        PN  TY   
Sbjct: 596 QKLNEIEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSL------PNQNTYACF 649

Query: 260 IDGLCKEGFVDKAKELFLQMKD---KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           +D L  EG ++KA    +Q+ D   +    + VTYN LI GFC      EA  +L+ M+D
Sbjct: 650 LDYLTSEGNIEKA----IQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMID 705

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            G+ PD ++++ I+ E C+ G + EA +L E M+ RGVNP+T  ++ L+ G C+TG +  
Sbjct: 706 SGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTK 765

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A EL   M   G K    +Y
Sbjct: 766 AFELRDDMMRRGVKPNRATY 785



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + + +   L + + +   L LF  + S+GL PD+Y Y  ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +GR+  S        +   I+GLC   R+ EA  +   L   G + +V TY TL+ GLC+
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               +      EEM N   +FG V  P+    + ++DGL K+G +  A +L  ++K   +
Sbjct: 298 ----VEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +  YN+LI+  C     +EA  L   M  +G+ P+ VT+++++D  CK GK+D A  
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M   G+      +S+L+ G C  G++  AK LF  M + G K  V  Y
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 116/291 (39%), Gaps = 64/291 (21%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R C     + F  LI+      R ++   +   +   G  P + T S ++NGL R     
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFR 197

Query: 230 VALNLFEEMANGNGKFGVV-----------------------------CKPNTVTYTTII 260
           +AL+LF+E+ +   +  V                              C  +  TY   I
Sbjct: 198 MALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-- 318
            GLCK   V +A E+   +  K +  DV TY +L+ G C   ++     ++ EM++ G  
Sbjct: 258 RGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFV 317

Query: 319 ---------------------------------VQPDVVTFNVIMDELCKNGKMDEASRL 345
                                            V P +  +N +++ +CK+GK+DEA  L
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M  +G+ PN  T+S L+D FC  G+++ A      M  +G K TV+ Y
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428



 Score = 41.2 bits (95), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 95  DYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + ++NM  S   P   S++ +     +       + L++ + + G+ PD   YN LI   
Sbjct: 698 EVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGC 757

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           C  G ++  F +   ++R    P+   + SLI G C  S +   A  F+
Sbjct: 758 CVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTADYFS 806


>gi|115482590|ref|NP_001064888.1| Os10g0484300 [Oryza sativa Japonica Group]
 gi|22094354|gb|AAM91881.1| putative membrane-associated salt-inducible protein [Oryza sativa
           Japonica Group]
 gi|31432736|gb|AAP54334.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|78708824|gb|ABB47799.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
           sativa Japonica Group]
 gi|113639497|dbj|BAF26802.1| Os10g0484300 [Oryza sativa Japonica Group]
          Length = 578

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 164/334 (49%), Gaps = 44/334 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGR 157
           R   P + +FN +   L +         + K + + GL P + TYN LI+ +CK    G 
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           + H  ++L  ++ +  +P AV F  LI G C  S    A  +F ++K  G   +V+TY++
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC  G     + L EEM +     G+   PN +T+  ++ G CK+G +  A +   
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMED----LGL--SPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 278 QMKDKNINPDVV-----------------------------------TYNSLIHGFCYAN 302
            M ++N+ PDVV                                   TYN LI GF  + 
Sbjct: 359 GMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           DW  A+ LL EM ++G++ DVVT+NV++  LC  G++ +A +LL+ M   G+ PN  T++
Sbjct: 419 DWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYN 478

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ GFC  G +  A E+   ME    +  V +Y
Sbjct: 479 TIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTY 512



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 151/295 (51%), Gaps = 9/295 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +S N L   L   K  D     F+      + PD+YT+N +I+  C++G++     V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAE---SRIMEAAALFTKLKAFGCKPNVITYSTLING 221
              I      P    + SLI G C +     +     L  ++   G  P  +T+  LING
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+  +T  A+ +FEEM     + G+    + VTY ++I GLC EG V++  +L  +M+D
Sbjct: 274 YCKNSNTAAAVRVFEEMK----QQGIAA--SVVTYNSLISGLCSEGKVEEGVKLMEEMED 327

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             ++P+ +T+  ++ GFC      +AN  +  M ++ V+PDVV +N+++D   + GKM++
Sbjct: 328 LGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMED 387

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  + E M  +G++PN +T++ L+ GF  +G    A  L   M+  G +  V +Y
Sbjct: 388 AMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 149/344 (43%), Gaps = 47/344 (13%)

Query: 64  ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY 123
           A+    +   CK  G G++  +       +   M+    SP  +T F +L     K  + 
Sbjct: 227 ATYNSLIDGYCKKGGAGNMYHVD-----MLLKEMVEAGISPTAVT-FGVLINGYCKNSNT 280

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
              + +F+ +   G+   + TYN LI+  C  G+V  G  ++  +     +P+ + F  +
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCV 340

Query: 184 IKGLCAES-----------------------------------RIMEAAALFTKLKAFGC 208
           +KG C +                                    ++ +A A+   +   G 
Sbjct: 341 LKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGI 400

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV TY+ LI G  R+G    A  L +EM           + + VTY  +I  LC +G 
Sbjct: 401 SPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKG------IEADVVTYNVLIGALCCKGE 454

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V KA +L  +M +  + P+ +TYN++I GFC   +   A  +   M     + +VVT+NV
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            +   C+ GKMDEA+ LL  M+ + + PN  T+ T+ +G    G
Sbjct: 515 FIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+T +   ++ GL     VD A++ F     + ++PD+ T+N++I G C      +A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKN---GKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +  ++   G+ P V T+N ++D  CK    G M     LL+ M+  G++P   TF  L++
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C       A  +F  M+  G   +V +Y
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTY 302



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T++N L    +++  + +   L   +   G+  D+ TYN+LI   C  G V     +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ + + ++I+G C +  I  A  + T+++    + NV+TY+  I   C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            G    A +L  EM +          PN +TY TI +G+ ++G+
Sbjct: 522 IGKMDEANDLLNEMLDK------CLVPNGITYETIKEGMMEKGY 559


>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 634

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/303 (29%), Positives = 156/303 (51%), Gaps = 11/303 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +    LF+ +   G+ PD+YTY  L++ FCK+G +      
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ V +T+LI       ++  A  +F  + + GC PN++TY+ LI+G C+
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCK 239

Query: 225 TGHTIVALNLFEEMANGNGK-------FGVV----CKPNTVTYTTIIDGLCKEGFVDKAK 273
            G T  A  ++  M N           F +V     +PN VTY  ++DGLCK   V +A+
Sbjct: 240 AGETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEAR 299

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   M  +   P+ + Y++LI GFC     +EA  +  +M+  G  P+V T++ ++D+L
Sbjct: 300 DLLETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKL 359

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K+ ++D A ++L  M+     PN   ++ ++DG C  G+ + A  L + ME  GC   V
Sbjct: 360 FKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNV 419

Query: 394 FSY 396
            +Y
Sbjct: 420 VTY 422



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 102/351 (29%), Positives = 154/351 (43%), Gaps = 65/351 (18%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN------------- 150
           P P+  FN L     ++  Y     L K++   G  P    YNILI              
Sbjct: 9   PSPMI-FNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTEDLPSMEV 67

Query: 151 ----------------------------CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
                                       C C +G+    + V+  ++   F PD+  ++ 
Sbjct: 68  IGLAERAYNEMLEMGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSK 127

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +I  LC  S++ +A  LF ++K  G  P+V TY+TL++  C+ G    A N F+EM    
Sbjct: 128 VIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDG 187

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                 C PN VTYT +I    K   + +A E+F  M      P++VTY +LI G C A 
Sbjct: 188 ------CAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAG 241

Query: 303 DWNEANCLLIEMMDQGV-----------------QPDVVTFNVIMDELCKNGKMDEASRL 345
           +  +A  +   M +  V                 +P+VVT+  ++D LCK  K+ EA  L
Sbjct: 242 ETEKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDL 301

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LE M L G  PN   +  L+DGFC  G+++ A+E+F  M   GC   V++Y
Sbjct: 302 LETMSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTY 352



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 144/299 (48%), Gaps = 23/299 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     KT+       +F+ + S G  P++ TY  LI+  CK G       +
Sbjct: 190 PNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQI 249

Query: 165 LGR-----------------ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
             R                 +      P+ V + +L+ GLC   ++ EA  L   +   G
Sbjct: 250 YARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEG 309

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PN I Y  LI+G C+ G    A  +F +M  G+G     C PN  TY+++ID L K+ 
Sbjct: 310 CEPNQIIYDALIDGFCKVGKLDEAQEVFTKML-GHG-----CSPNVYTYSSLIDKLFKDK 363

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A ++  +M + +  P+VV Y  ++ G C     +EA  L++ M ++G  P+VVT+ 
Sbjct: 364 RLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYT 423

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++D   K G++D    LL+LM  +G  PN  T+  L++  C  G ++ A +L   M+ 
Sbjct: 424 AMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQ 482



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 138/290 (47%), Gaps = 39/290 (13%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           F+ ++S    P++ TY  L++  CK  +V     +L  +      P+ + + +LI G C 
Sbjct: 267 FRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQIIYDALIDGFCK 326

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             ++ EA  +FTK+   GC PNV TYS+LI+ L +     +AL +  +M   +      C
Sbjct: 327 VGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKMLENS------C 380

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN V YT ++DGLCK G  D+A  L L M++K   P+VVTY ++I GF  A   +    
Sbjct: 381 APNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLE 440

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM--------------ILRGVN 355
           LL  M  +G  P+ +T+ V+++  C  G +D+A +LLE M              ++ G +
Sbjct: 441 LLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFS 500

Query: 356 -------------------PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
                              P    +  L+D F   GR+  A EL   + S
Sbjct: 501 HEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAGRLEMALELHEELSS 550



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 138/292 (47%), Gaps = 11/292 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +++    P    ++ L     K    D    +F ++   G  P++YTY+ LI+   K  R
Sbjct: 305 MSLEGCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKDKR 364

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     VL ++L +   P+ V +T ++ GLC   +  EA  L   ++  GC PNV+TY+ 
Sbjct: 365 LDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTA 424

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I+G  + G     L L + M +        C PN +TY  +I+  C  G +D A +L  
Sbjct: 425 MIDGFGKAGRVDRCLELLQLMTSKG------CAPNFITYRVLINHCCAAGLLDDAHKLLE 478

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +MK       +  Y  +I GF  ++++  +  LL E+ + G  P +  + +++D   K G
Sbjct: 479 EMKQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAG 536

Query: 338 KMDEASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ A  L  EL        N  T+ +L++   L  +V+ A +L+  M   G
Sbjct: 537 RLEMALELHEELSSFSAAYQN--TYVSLIESLTLACKVDKAFKLYSDMTRRG 586



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 106/231 (45%), Gaps = 5/231 (2%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           I   C+ P  + F SL+   C       A  L  K+   G +P  + Y+ LI G+C T  
Sbjct: 3   ITEGCY-PSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICSTED 61

Query: 228 --TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
             ++  + L E   N   + GVV   N V        LC  G  +KA  +  +M  K   
Sbjct: 62  LPSMEVIGLAERAYNEMLEMGVVL--NKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFI 119

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  TY+ +I   C A+   +A  L  EM   G+ PDV T+  ++D  CK G +++A   
Sbjct: 120 PDSSTYSKVIGYLCNASKVEKAFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNW 179

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + M   G  PN  T++ L+  +  T +++ A E+F  M S GC   + +Y
Sbjct: 180 FDEMQQDGCAPNVVTYTALIHAYLKTRKLSRANEIFEMMLSNGCVPNIVTY 230



 Score = 71.2 bits (173), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 13/227 (5%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++  +     K    D  L L + + S G  P+  TY +LIN  C  G
Sbjct: 409 MMEEKGCYPNVVTYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAG 468

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     +L  + ++ +      +  +I+G   E   + +  L  +L   G  P +  Y 
Sbjct: 469 LLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFSHE--FVASLGLLAELSEDGSVPILPVYK 526

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G   +AL L EE+++ +  +         TY ++I+ L     VDKA +L+
Sbjct: 527 LLIDNFIKAGRLEMALELHEELSSFSAAY-------QNTYVSLIESLTLACKVDKAFKLY 579

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             M  +   P++     LI G      W EA    +++ D   Q D+
Sbjct: 580 SDMTRRGFVPELSMLVCLIKGLLRVGKWEEA----LQLSDSICQMDI 622



 Score = 38.5 bits (88), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+ +G  P  + FN ++   C++G    A +LL+ M++ G  P    ++ L+ G C T  
Sbjct: 2   MITEGCYPSPMIFNSLVHAYCRSGDYFYAYKLLKKMVICGYQPGYVVYNILIGGICST-- 59

Query: 374 VNHAKELFVSMESMGCKHTVFS 395
                E   SME +G     ++
Sbjct: 60  -----EDLPSMEVIGLAERAYN 76


>gi|255660842|gb|ACU25590.1| pentatricopeptide repeat-containing protein [Priva cordifolia]
          Length = 418

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 149/274 (54%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +    +V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G +D A E++ Q+  + ++PD++TYN+LI+
Sbjct: 231 EMLEK----GLV--PNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           GFC   D  +   L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GFCKKGDLKQTRDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 345 DDVVYTALISGLCKEGRSVDAEKMLREMLSVGLK 378



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 140/256 (54%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   ++++G  PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKMGILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   ++  A  ++ ++ + G  P++ITY+TLI G C+
Sbjct: 229 FDEMLEKGLVPNGVTFTTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G      +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M ++NI
Sbjct: 289 KGDLKQTRDLIDEMSMKG------LKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ ++M+E CKNG ++  S+
Sbjct: 343 RLDDVVYTALISGLCKEGRSVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           LL+ M   G  P+  T
Sbjct: 403 LLKEMQRDGHVPSVVT 418



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K         +F  +   GL P + ++N L+N + KMG +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++++ +          P+ +TY T+I G CK+G + + ++L  +M  K 
Sbjct: 253 KNGKLDLAMEIYKQILSQG------LSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A     +M+++ ++ D V +  ++  LCK G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P++ T++ +M+ FC  G VN   +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDG 411



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 108/190 (56%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L++  C+ G   +A  +F+ +     K+G+  KP+ V++ T+++G  K 
Sbjct: 131 GYPASLYFFNILMHRFCKEGEIRLAQLVFDAIT----KWGL--KPSVVSFNTLMNGYIKM 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M      PDV TY+ LI+G C  +  +EA+ L  EM+++G+ P+ VTF
Sbjct: 185 GILDEGFRLKNAMHASGAQPDVYTYSVLINGLCKESKMDEAHELFDEMLEKGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNGK+D A  + + ++ +G++P+  T++TL+ GFC  G +   ++L   M  
Sbjct: 245 TTLIDGHCKNGKLDLAMEIYKQILSQGLSPDLITYNTLIYGFCKKGDLKQTRDLIDEMSM 304

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 305 KGLKPDKITY 314



 Score = 47.8 bits (112), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC       A +L + + +  GK      F  +       + +   ++ +I 
Sbjct: 15  SYCTMIHFLCTHQMLPEAKSLIQVIVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E F   ++        T   ++        +        E+++ G   
Sbjct: 75  AYLESGFLRDALECFRLSREHKFWVPFDTCRKVLDHLMKLKYFKLVWGFYKEILECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G++  A  + + +   G+ P+  +F+TLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEIRLAQLVFDAITKWGLKPSVVSFNTLMNGYIKMGILDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 NAMHASGAQPDVYTY 209



 Score = 39.7 bits (91), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 25/117 (21%), Positives = 48/117 (41%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++M+   P   ++  L     K    +T     K++    +  D   Y  LI+  CK GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKKMIEENIRLDDVVYTALISGLCKEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
                 +L  +L     PD+  +T ++   C    +   + L  +++  G  P+V+T
Sbjct: 362 SVDAEKMLREMLSVGLKPDSGTYTIVMNEFCKNGDVNTGSKLLKEMQRDGHVPSVVT 418


>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Glycine max]
          Length = 570

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 158/309 (51%), Gaps = 8/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NE+     +++N    P  +    L+ G L  +K  D  + +   L + G  PDL  YN 
Sbjct: 74  NESLYFLRHLVNKGHKPDVVLCTKLIHG-LFTSKTIDKAIQVMHILENHG-HPDLIAYNA 131

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  FC+  R+   + VL R+    F+PD V +  LI  LC+   +  A     +L    
Sbjct: 132 IITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKEN 191

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP V+TY+ LI      G    A+ L +EM   N       +P+  TY +II G+C+EG
Sbjct: 192 CKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEIN------LQPDMFTYNSIIRGMCREG 245

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           +VD+A ++   +  K   PDV+TYN L+ G      W     L+ +M+ +G + +VVT++
Sbjct: 246 YVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYS 305

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++  +C++GK++E   LL+ M  +G+ P+   +  L+   C  GRV+ A E+   M S 
Sbjct: 306 VLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISD 365

Query: 388 GCKHTVFSY 396
           GC   + +Y
Sbjct: 366 GCVPDIVNY 374



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 164/343 (47%), Gaps = 26/343 (7%)

Query: 68  QFLKERCKSSG------------QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG 115
           Q LKE CK +             QG I     +EA  + D ML +   P   T +N +  
Sbjct: 186 QLLKENCKPTVVTYTILIEATLLQGGI-----DEAMKLLDEMLEINLQPDMFT-YNSIIR 239

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
            + +  + D    +   ++S G  PD+ TYNIL+      G+   G+ ++  ++      
Sbjct: 240 GMCREGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEA 299

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           + V ++ LI  +C + ++ E   L   +K  G KP+   Y  LI  LC+ G   +A+ + 
Sbjct: 300 NVVTYSVLISSVCRDGKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVL 359

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           + M +        C P+ V Y TI+  LCK+   D+A  +F ++ +   +P+  +YNS+ 
Sbjct: 360 DVMISDG------CVPDIVNYNTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMF 413

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG-- 353
                      A  +++EM+D+GV PD +T+N ++  LC++G +DEA  LL  M +    
Sbjct: 414 SALWSTGHKVRALGMILEMLDKGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSE 473

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             P+  +++ ++ G C   RV+ A E+  +M   GC+    +Y
Sbjct: 474 CKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMVDKGCRPNETTY 516



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 153/285 (53%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L     ++    L   + + G   ++ TY++LI+  C+ G+V  G  +
Sbjct: 264 PDVITYNILLRGLLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGL 323

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +    PD   +  LI  LC E R+  A  +   + + GC P+++ Y+T++  LC+
Sbjct: 324 LKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLCK 383

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL++FE++    G+ G  C PN  +Y ++   L   G   +A  + L+M DK +
Sbjct: 384 QKRADEALSIFEKL----GEVG--CSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGV 437

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLI--EMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           +PD +TYNSLI   C     +EA  LL+  EM     +P VV++N+++  LCK  ++ +A
Sbjct: 438 DPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDA 497

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             +L  M+ +G  PN +T++ L++G    G +N A++L  ++ +M
Sbjct: 498 IEVLAAMVDKGCRPNETTYTFLIEGIGFGGCLNDARDLATTLVNM 542



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 154/347 (44%), Gaps = 46/347 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ + D M N +   P + ++N+L G L      D+ L    +L      P + TY I
Sbjct: 143 DSAYQVLDRMKN-KGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTI 201

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI      G +     +L  +L     PD   + S+I+G+C E  +  A  + + + + G
Sbjct: 202 LIEATLLQGGIDEAMKLLDEMLEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKG 261

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             P+VITY+ L+ GL   G       L  +M A G       C+ N VTY+ +I  +C++
Sbjct: 262 YAPDVITYNILLRGLLNQGKWEAGYELMSDMVARG-------CEANVVTYSVLISSVCRD 314

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V++   L   MK K + PD   Y+ LI   C     + A  +L  M+  G  PD+V +
Sbjct: 315 GKVEEGVGLLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNY 374

Query: 327 NVIMDELCKNGKMDEASRLLEL-----------------------------------MIL 351
           N I+  LCK  + DEA  + E                                    M+ 
Sbjct: 375 NTILACLCKQKRADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLD 434

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFV--SMESMGCKHTVFSY 396
           +GV+P+  T+++L+   C  G V+ A EL V   MES  CK +V SY
Sbjct: 435 KGVDPDGITYNSLISCLCRDGMVDEAIELLVDMEMESSECKPSVVSY 481


>gi|326522214|dbj|BAK04235.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 966

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 156/319 (48%), Gaps = 11/319 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF I   M+  +   P  +++  +   L + K  D    LF+ +   G+ PD+YTY I
Sbjct: 434 EKAFQIVKEMMR-KGFVPDASTYTKVITFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTI 492

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK G +         +  +  +P+ V +T+L+       ++ +A  +F ++    
Sbjct: 493 LIDSFCKAGLIEQAQSWFDEMRSAGCSPNVVTYTALLHAYLKSKQLYQANDIFHRMVGDA 552

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN----------GKFGVVCKPNTVTYT 257
           C PN ITYS LI+GLC+ G    A  ++ ++   +          GK      PN VTY 
Sbjct: 553 CYPNAITYSALIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYG 612

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +++GLCK   V  A +L   M      P+ + Y++L+ GFC   + + A  + + M   
Sbjct: 613 ALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMTKC 672

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P V T+  ++D + K+G++D A ++L  M+    NPN  T++ ++DG C TG    A
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKA 732

Query: 378 KELFVSMESMGCKHTVFSY 396
             L   ME  GC   V +Y
Sbjct: 733 LNLLSLMEKKGCSPNVVTY 751



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 146/301 (48%), Gaps = 23/301 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A   FD M +   SP  +T   LL   L K+K       +F R+     +P+  TY+ 
Sbjct: 504 EQAQSWFDEMRSAGCSPNVVTYTALLHAYL-KSKQLYQANDIFHRMVGDACYPNAITYSA 562

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC----------------FTPDAVAFTSLIKGLCAES 191
           LI+  CK G +     V  +++ +                  +P+ V + +L+ GLC   
Sbjct: 563 LIDGLCKAGEIQKACEVYAKLIGTSDNIESDFYFEGKDTDTISPNVVTYGALVNGLCKAQ 622

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++ +A  L   + A GC+PN I Y  L++G C+ G    A  +F  M     K G +  P
Sbjct: 623 KVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEVFLRMT----KCGYL--P 676

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  TYT++ID + K+G +D A ++  QM   + NP+VVTY +++ G C   +  +A  LL
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLL 736

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M  +G  P+VVT+  ++D L K GK+D    L   M  +G  PN  T+  L++  C  
Sbjct: 737 SLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAA 796

Query: 372 G 372
           G
Sbjct: 797 G 797



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 133/280 (47%), Gaps = 8/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K +       L   + + G  P+   Y+ L++ FCK+G +     V
Sbjct: 606 PNVVTYGALVNGLCKAQKVSDAHDLLDAMLAAGCEPNQIVYDALVDGFCKVGEIDSAQEV 665

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+ +  + P    +TSLI  +  + R+  A  + +++    C PNV+TY+ +++GLC+
Sbjct: 666 FLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCK 725

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           TG T  ALNL   M          C PN VTYT +IDGL K G VD   ELF+QMK K  
Sbjct: 726 TGETEKALNLLSLMEKKG------CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGC 779

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTY  LI+  C A   ++A+ LL EM        +  +   +    K  +   +  
Sbjct: 780 APNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK--RFLASLG 837

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LLE M      P    +  L+D F   GR+  A EL   M
Sbjct: 838 LLEEMESHDTAPIAPVYGMLIDSFSKAGRLETALELHKEM 877



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 43/329 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D ML     P  +  ++ L     K    D+   +F R+   G  P ++TY  
Sbjct: 625 SDAHDLLDAMLAAGCEPNQIV-YDALVDGFCKVGEIDSAQEVFLRMTKCGYLPSVHTYTS 683

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K GR+     VL ++L+    P+ V +T+++ GLC      +A  L + ++  G
Sbjct: 684 LIDRMFKDGRLDLAMKVLSQMLKDSCNPNVVTYTAMVDGLCKTGETEKALNLLSLMEKKG 743

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+ LI+GL + G     L LF +M          C PN VTY  +I+  C  G
Sbjct: 744 CSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKG------CAPNYVTYRILINHCCAAG 797

Query: 268 F--------------------------VDKAKELFL-------QMKDKNINPDVVTYNSL 294
                                      V    + FL       +M+  +  P    Y  L
Sbjct: 798 LLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSKRFLASLGLLEEMESHDTAPIAPVYGML 857

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV---IMDELCKNGKMDEASRLLELMIL 351
           I  F  A     A  L  EMM+     ++ + ++   ++  LC + +++EA  L   M  
Sbjct: 858 IDSFSKAGRLETALELHKEMMEVSSSLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRR 917

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           RG+ P+ S F  L+ G     + N A +L
Sbjct: 918 RGIVPDLSAFVCLVKGLIERNKWNEALQL 946



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 24/341 (7%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           DR+++  F +  CK    GD   +   E F + D +L  +           +   L +  
Sbjct: 238 DRSTVGSFAQALCKEGRWGDALDLLEREDFKL-DTVLCTQ-----------MISGLMEAS 285

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            ++  +S   R+      P++ TY  L+  F K  ++     ++  ++     P    F 
Sbjct: 286 LFNEAMSFLHRMRCNSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFN 345

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT------IVALNLF 235
           SL+   C       A  LF ++   GC P  + Y+  I  +C            +A  ++
Sbjct: 346 SLVHTYCNAEDYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVY 405

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           EEM   +      C  N +        LC  G  +KA ++  +M  K   PD  TY  +I
Sbjct: 406 EEMLVAS------CVLNKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVI 459

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
              C A   ++A  L  EM   GV PDV T+ +++D  CK G +++A    + M   G +
Sbjct: 460 TFLCQAKRVDKAFLLFQEMKKVGVNPDVYTYTILIDSFCKAGLIEQAQSWFDEMRSAGCS 519

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           PN  T++ L+  +  + ++  A ++F  M    C     +Y
Sbjct: 520 PNVVTYTALLHAYLKSKQLYQANDIFHRMVGDACYPNAITY 560



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 75/315 (23%), Positives = 123/315 (39%), Gaps = 50/315 (15%)

Query: 123 YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           +   L    RL   G  P   TYN L+      G+V   F V   +  S F  D     S
Sbjct: 185 WGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGS 244

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
             + LC E R  +A  L  + + F  K + +  + +I+GL        A++    M   +
Sbjct: 245 FAQALCKEGRWGDALDLLER-EDF--KLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNS 301

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                   PN VTY T++ G  K+  +   K +   M  +  NP    +NSL+H +C A 
Sbjct: 302 ------YIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGCNPSPSLFNSLVHTYCNAE 355

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN-------------------------- 336
           D+  A  L   M   G  P  V +N+ +  +C                            
Sbjct: 356 DYAYAYKLFNRMNTCGCPPGYVVYNIFIGSICGREELPNPELLDLAEKVYEEMLVASCVL 415

Query: 337 ---------------GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
                          GK ++A ++++ M+ +G  P+ ST++ ++   C   RV+ A  LF
Sbjct: 416 NKINTANFARCLCGVGKFEKAFQIVKEMMRKGFVPDASTYTKVITFLCQAKRVDKAFLLF 475

Query: 382 VSMESMGCKHTVFSY 396
             M+ +G    V++Y
Sbjct: 476 QEMKKVGVNPDVYTY 490



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 54/223 (24%), Positives = 100/223 (44%), Gaps = 5/223 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  +   P + ++  L   L K    D  L LF ++ + G  P+  TY ILIN  C  G
Sbjct: 738 LMEKKGCSPNVVTYTALIDGLGKAGKVDAGLELFMQMKTKGCAPNYVTYRILINHCCAAG 797

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +    ++L  + ++ +      + + ++G     R + +  L  ++++    P    Y 
Sbjct: 798 LLDDAHLLLDEMKQTHWPKYLQGYRTTVQGF--SKRFLASLGLLEEMESHDTAPIAPVYG 855

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G    AL L +EM   +    +  K     +T++I  LC    V++A  L+
Sbjct: 856 MLIDSFSKAGRLETALELHKEMMEVSSSLNMASKD---MHTSLIQALCLSSQVEEAVALY 912

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            +M+ + I PD+  +  L+ G    N WNEA  L   +  +GV
Sbjct: 913 SEMRRRGIVPDLSAFVCLVKGLIERNKWNEALQLCYGICQEGV 955



 Score = 81.3 bits (199), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 65/260 (25%), Positives = 115/260 (44%), Gaps = 11/260 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L KT   +  L+L   +   G  P++ TY  LI+   K G+V  G  +
Sbjct: 711 PNVVTYTAMVDGLCKTGETEKALNLLSLMEKKGCSPNVVTYTALIDGLGKAGKVDAGLEL 770

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      P+ V +  LI   CA   + +A  L  ++K       +  Y T + G  +
Sbjct: 771 FMQMKTKGCAPNYVTYRILINHCCAAGLLDDAHLLLDEMKQTHWPKYLQGYRTTVQGFSK 830

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + +L L EEM + +        P    Y  +ID   K G ++ A EL  +M + + 
Sbjct: 831 --RFLASLGLLEEMESHD------TAPIAPVYGMLIDSFSKAGRLETALELHKEMMEVSS 882

Query: 285 NPDVVT---YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + ++ +   + SLI   C ++   EA  L  EM  +G+ PD+  F  ++  L +  K +E
Sbjct: 883 SLNMASKDMHTSLIQALCLSSQVEEAVALYSEMRRRGIVPDLSAFVCLVKGLIERNKWNE 942

Query: 342 ASRLLELMILRGVNPNTSTF 361
           A +L   +   GVN   + F
Sbjct: 943 ALQLCYGICQEGVNWEGNKF 962



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 3/118 (2%)

Query: 267 GFVDKAK---ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           GF D A+    L  ++ + + +      N L+   C    W EA   L  + D G +P  
Sbjct: 145 GFEDPARTAERLLREIGEDDRDVLGRLLNVLVRRCCLQGLWGEALEELGRLKDFGYRPSA 204

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           VT+N ++  L   G+++ A R+ + M   G   + ST  +     C  GR   A +L 
Sbjct: 205 VTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDRSTVGSFAQALCKEGRWGDALDLL 262



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 39/158 (24%), Positives = 57/158 (36%), Gaps = 32/158 (20%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C +G   +A E   ++KD    P  VTYN+L+     A     A  +  EM   G   D 
Sbjct: 180 CLQGLWGEALEELGRLKDFGYRPSAVTYNALVQVLASAGQVEMAFRVQKEMSASGFCMDR 239

Query: 324 VTFNVIMDELCKNGKMDEASRLLE-----------LMILRGVN----------------- 355
            T       LCK G+  +A  LLE             ++ G+                  
Sbjct: 240 STVGSFAQALCKEGRWGDALDLLEREDFKLDTVLCTQMISGLMEASLFNEAMSFLHRMRC 299

Query: 356 ----PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
               PN  T+ TL+ GF    ++   K +   M + GC
Sbjct: 300 NSYIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMTEGC 337


>gi|255660780|gb|ACU25559.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
          Length = 418

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  GC  +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 36/160 (22%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA------------- 196
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A             
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 197 ----------------------AALFTKLKAFGCKPNVIT 214
                                 + L  +++  GC P+V+T
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGCMPSVVT 418


>gi|225435038|ref|XP_002281336.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900 [Vitis vinifera]
          Length = 900

 Score =  173 bits (438), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 100/284 (35%), Positives = 150/284 (52%), Gaps = 9/284 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P      NL+ G L K  +  +   L  ++   G+ P L+ YN LIN  CK G++     
Sbjct: 318 PSEAAVSNLVDG-LRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAES 376

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      P+ V ++ LI   C   ++  A     K+   G K  V  YS+LI+G C
Sbjct: 377 LFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPYSSLISGHC 436

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           + G    A +LF+EM ANG        KPN V YT++I G CKEG +  A  L+ +M  K
Sbjct: 437 KLGKLRAAKSLFDEMIANG-------LKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGK 489

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            I+P+  T+ +LI G C+AN   EAN L  EM++  V P+ VT+NV+++  CK G    A
Sbjct: 490 GISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRA 549

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             LL+ M+ +G+ P+T T+  L+ G C TGRV+ A+E    ++ 
Sbjct: 550 FELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEAREFMNDLQG 593



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   + K    D   SLF  +   GLFP+  TY+ILI+ FCK G++      
Sbjct: 353 PSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHF 412

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG++           ++SLI G C   ++  A +LF ++ A G KPNV+ Y++LI+G C+
Sbjct: 413 LGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIYTSLISGYCK 472

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L+ EM  G G       PNT T+T +I GLC    + +A +LF +M + N+
Sbjct: 473 EGELHNAFRLYHEMT-GKG-----ISPNTYTFTALISGLCHANRMAEANKLFGEMVEWNV 526

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN LI G C   +   A  LL EM+++G+ PD  T+  ++  LC  G++ EA  
Sbjct: 527 IPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPLISGLCSTGRVSEARE 586

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  +       N   FS L+ G+C  GR++ A +    M   G    +  Y
Sbjct: 587 FMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGVAMDLVCY 638



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + + +   L + + +   L LF  + S+GL PD+Y Y  ++   C++        V
Sbjct: 178 PQIRTLSGVLNGLIRIRQFRMALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREV 237

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +GR+  S        +   I+GLC   R+ EA  +   L   G + +V TY TL+ GLC+
Sbjct: 238 IGRMESSGCDLSVATYNVFIRGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCK 297

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               +      EEM N   +FG V  P+    + ++DGL K+G +  A +L  ++K   +
Sbjct: 298 ----VEEFEAGEEMMNEMIEFGFV--PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGV 351

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +  YN+LI+  C     +EA  L   M  +G+ P+ VT+++++D  CK GK+D A  
Sbjct: 352 APSLFVYNALINSMCKDGKLDEAESLFNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALH 411

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M   G+      +S+L+ G C  G++  AK LF  M + G K  V  Y
Sbjct: 412 FLGKMTEVGIKATVYPYSSLISGHCKLGKLRAAKSLFDEMIANGLKPNVVIY 463



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 109/371 (29%), Positives = 164/371 (44%), Gaps = 64/371 (17%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M+     P  +T +N+L     K  +      L   +   GL PD YTY  L
Sbjct: 513 EANKLFGEMVEWNVIPNEVT-YNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDTYTYRPL 571

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  GRVS     +  +       + + F++L+ G C E R+ +A     ++   G 
Sbjct: 572 ISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACREMLGRGV 631

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN--------------------GNGK--FG 246
             +++ YS LI G+ R       ++L ++M +                    GN K  FG
Sbjct: 632 AMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKMAFG 691

Query: 247 VV-------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD------------ 287
           +        C PN VTYT +I+GLCK G +DKA+ L  +M   N  P+            
Sbjct: 692 LWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLDYLT 751

Query: 288 ----------------------VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
                                  VTYN LI GFC      EA  +L+ M+D G+ PD ++
Sbjct: 752 SEGNIEKAIQLHDVLLEGFLANTVTYNILIRGFCKLGRIQEAAEVLVNMIDSGISPDCIS 811

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++ I+ E C+ G + EA +L E M+ RGVNP+T  ++ L+ G C+TG +  A EL   M 
Sbjct: 812 YSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELTKAFELRDDMM 871

Query: 386 SMGCKHTVFSY 396
             G K    +Y
Sbjct: 872 RRGVKPNRATY 882



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 138/282 (48%), Gaps = 29/282 (10%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           SLF  + + GL P++  Y  LI+ +CK G + + F +   +     +P+   FT+LI GL
Sbjct: 446 SLFDEMIANGLKPNVVIYTSLISGYCKEGELHNAFRLYHEMTGKGISPNTYTFTALISGL 505

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG------ 241
           C  +R+ EA  LF ++  +   PN +TY+ LI G C+ G+T+ A  L +EM         
Sbjct: 506 CHANRMAEANKLFGEMVEWNVIPNEVTYNVLIEGHCKEGNTVRAFELLDEMVEKGLVPDT 565

Query: 242 -----------------------NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                                  N   G   K N + ++ ++ G CKEG +D A +   +
Sbjct: 566 YTYRPLISGLCSTGRVSEAREFMNDLQGEQQKLNEMCFSALLHGYCKEGRLDDALDACRE 625

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  + +  D+V Y+ LI+G     D      LL +M DQG++PD V +  ++D   K G 
Sbjct: 626 MLGRGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGN 685

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           +  A  L ++M+  G  PN  T++ L++G C  G ++ A+ L
Sbjct: 686 LKMAFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELL 727



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 143/275 (52%), Gaps = 7/275 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R     L  +++L   + + +   +++ L K+++  GL PD   Y  +I+   K G +  
Sbjct: 629 RGVAMDLVCYSVLIYGILRQQDRRSIIDLLKQMHDQGLRPDNVLYTTMIDANAKAGNLKM 688

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            F +   ++     P+ V +T+LI GLC    + +A  L  ++ A    PN  TY+  ++
Sbjct: 689 AFGLWDIMVSEGCLPNVVTYTALINGLCKIGLMDKAELLCREMLASNSLPNQNTYACFLD 748

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            L   G+   A+ L + +  G          NTVTY  +I G CK G + +A E+ + M 
Sbjct: 749 YLTSEGNIEKAIQLHDVLLEG-------FLANTVTYNILIRGFCKLGRIQEAAEVLVNMI 801

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D  I+PD ++Y+++I+ +C   D  EA  L   M+++GV PD V +N ++   C  G++ 
Sbjct: 802 DSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGCCVTGELT 861

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           +A  L + M+ RGV PN +T+++L+ G CL   V+
Sbjct: 862 KAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVS 896



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 116/291 (39%), Gaps = 64/291 (21%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R C     + F  LI+      R ++   +   +   G  P + T S ++NGL R     
Sbjct: 138 RKCNFSTTLGFDLLIQTYVQNRRELDGLVVVRLMMDCGILPQIRTLSGVLNGLIRIRQFR 197

Query: 230 VALNLFEEMANGNGKFGVV-----------------------------CKPNTVTYTTII 260
           +AL+LF+E+ +   +  V                              C  +  TY   I
Sbjct: 198 MALHLFDEIVSSGLRPDVYVYTAVVRSLCELKDFIRAREVIGRMESSGCDLSVATYNVFI 257

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-- 318
            GLCK   V +A E+   +  K +  DV TY +L+ G C   ++     ++ EM++ G  
Sbjct: 258 RGLCKNQRVWEAVEIKNLLSYKGLRADVGTYCTLVLGLCKVEEFEAGEEMMNEMIEFGFV 317

Query: 319 ---------------------------------VQPDVVTFNVIMDELCKNGKMDEASRL 345
                                            V P +  +N +++ +CK+GK+DEA  L
Sbjct: 318 PSEAAVSNLVDGLRKKGNIGSAFDLVNKVKKFGVAPSLFVYNALINSMCKDGKLDEAESL 377

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M  +G+ PN  T+S L+D FC  G+++ A      M  +G K TV+ Y
Sbjct: 378 FNNMGHKGLFPNDVTYSILIDSFCKRGKLDVALHFLGKMTEVGIKATVYPY 428



 Score = 39.3 bits (90), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 2/105 (1%)

Query: 95  DYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + ++NM  S   P   S++ +     +       + L++ + + G+ PD   YN LI   
Sbjct: 795 EVLVNMIDSGISPDCISYSTIIYEYCRRGDLKEAIKLWESMLNRGVNPDTVAYNFLIYGC 854

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           C  G ++  F +   ++R    P+   + SLI G C  S +   A
Sbjct: 855 CVTGELTKAFELRDDMMRRGVKPNRATYNSLIHGTCLMSSVSSTA 899


>gi|410109933|gb|AFV61046.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           micromera]
          Length = 431

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN LI+
Sbjct: 237 EMLVK----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNXLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +AN L+ EM  +G++PD +T+  ++D  CK G +B A      MI   +  
Sbjct: 291 GLCKKGDLKQANDLIXEMSMKGLKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRXVDAEKMLRXMLSVGLKPDAXTY 390



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PXSLYFFNILMHRFCKDGDIRVAXSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC E ++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY  +I GLCK+G + +A +L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   + B A      M+++ ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLRXMLSVGLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 154/290 (53%), Gaps = 16/290 (5%)

Query: 80  GDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           GDI       A  +FD +    +RPS   + S+N L     +    D    L   + ++G
Sbjct: 156 GDIRV-----AXSVFDAITKWGLRPS---VVSYNTLMNGYIRLGDLDEGFRLKSAMXASG 207

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A 
Sbjct: 208 VQPDVYTYSVLINGLCKEXKMDDANELFDEMLVKGLVPNXVTFTTLIDGHCKNGRVDLAM 267

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            ++ ++ +    P++ITY+ LI GLC+ G    A +L  EM+          KP+ +TYT
Sbjct: 268 EIYKQMLSQSLLPDLITYNXLIYGLCKKGDLKQANDLIXEMSMKG------LKPDKITYT 321

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDG CKEG +B A E   +M ++NI  D V Y +LI G C      +A  +L  M+  
Sbjct: 322 TLIDGCCKEGNLBTAFEHRXRMIEENIRLDDVAYTALISGLCQEGRXVDAEKMLRXMLSV 381

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           G++PD  T+ +I++E CK G + + S+LL+ M   G  P+  T++ LM+G
Sbjct: 382 GLKPDAXTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|18087893|gb|AAL59047.1|AC087182_30 putative membrane-associated salt-inducible protein,3'-partial
           [Oryza sativa Japonica Group]
          Length = 571

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/334 (30%), Positives = 164/334 (49%), Gaps = 44/334 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---MGR 157
           R   P + +FN +   L +         + K + + GL P + TYN LI+ +CK    G 
Sbjct: 185 RRVSPDIYTFNTVISGLCRIGQLRKAGDVAKDIKAWGLAPSVATYNSLIDGYCKKGGAGN 244

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           + H  ++L  ++ +  +P AV F  LI G C  S    A  +F ++K  G   +V+TY++
Sbjct: 245 MYHVDMLLKEMVEAGISPTAVTFGVLINGYCKNSNTAAAVRVFEEMKQQGIAASVVTYNS 304

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC  G     + L EEM +     G+   PN +T+  ++ G CK+G +  A +   
Sbjct: 305 LISGLCSEGKVEEGVKLMEEMED----LGL--SPNEITFGCVLKGFCKKGMMADANDWID 358

Query: 278 QMKDKNINPDVV-----------------------------------TYNSLIHGFCYAN 302
            M ++N+ PDVV                                   TYN LI GF  + 
Sbjct: 359 GMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMAKKGISPNVTTYNCLITGFSRSG 418

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           DW  A+ LL EM ++G++ DVVT+NV++  LC  G++ +A +LL+ M   G+ PN  T++
Sbjct: 419 DWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYN 478

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ GFC  G +  A E+   ME    +  V +Y
Sbjct: 479 TIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTY 512



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/295 (29%), Positives = 151/295 (51%), Gaps = 9/295 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +S N L   L   K  D     F+      + PD+YT+N +I+  C++G++     V
Sbjct: 154 PSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGDV 213

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAE---SRIMEAAALFTKLKAFGCKPNVITYSTLING 221
              I      P    + SLI G C +     +     L  ++   G  P  +T+  LING
Sbjct: 214 AKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLING 273

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+  +T  A+ +FEEM     + G+    + VTY ++I GLC EG V++  +L  +M+D
Sbjct: 274 YCKNSNTAAAVRVFEEMK----QQGIAA--SVVTYNSLISGLCSEGKVEEGVKLMEEMED 327

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             ++P+ +T+  ++ GFC      +AN  +  M ++ V+PDVV +N+++D   + GKM++
Sbjct: 328 LGLSPNEITFGCVLKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMED 387

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  + E M  +G++PN +T++ L+ GF  +G    A  L   M+  G +  V +Y
Sbjct: 388 AMAVKEAMAKKGISPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTY 442



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 86/321 (26%), Positives = 146/321 (45%), Gaps = 12/321 (3%)

Query: 64  ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY 123
           A+    +   CK  G G++  +       +   M+    SP  +T F +L     K  + 
Sbjct: 227 ATYNSLIDGYCKKGGAGNMYHVD-----MLLKEMVEAGISPTAVT-FGVLINGYCKNSNT 280

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
              + +F+ +   G+   + TYN LI+  C  G+V  G  ++  +     +P+ + F  +
Sbjct: 281 AAAVRVFEEMKQQGIAASVVTYNSLISGLCSEGKVEEGVKLMEEMEDLGLSPNEITFGCV 340

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           +KG C +  + +A      +     +P+V+ Y+ LI+   R G    A+ + E MA    
Sbjct: 341 LKGFCKKGMMADANDWIDGMTERNVEPDVVIYNILIDVYRRLGKMEDAMAVKEAMA---- 396

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           K G+   PN  TY  +I G  + G    A  L  +MK+K I  DVVTYN LI   C   +
Sbjct: 397 KKGI--SPNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGE 454

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             +A  LL EM + G++P+ +T+N I+   C  G +  A  +   M       N  T++ 
Sbjct: 455 VRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNV 514

Query: 364 LMDGFCLTGRVNHAKELFVSM 384
            +  FC  G+++ A +L   M
Sbjct: 515 FIKYFCQIGKMDEANDLLNEM 535



 Score = 82.8 bits (203), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/150 (28%), Positives = 75/150 (50%), Gaps = 3/150 (2%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+T +   ++ GL     VD A++ F     + ++PD+ T+N++I G C      +A  
Sbjct: 153 RPSTSSVNALLAGLVGAKRVDLAEKAFRSALRRRVSPDIYTFNTVISGLCRIGQLRKAGD 212

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKN---GKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +  ++   G+ P V T+N ++D  CK    G M     LL+ M+  G++P   TF  L++
Sbjct: 213 VAKDIKAWGLAPSVATYNSLIDGYCKKGGAGNMYHVDMLLKEMVEAGISPTAVTFGVLIN 272

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C       A  +F  M+  G   +V +Y
Sbjct: 273 GYCKNSNTAAAVRVFEEMKQQGIAASVVTY 302



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T++N L    +++  + +   L   +   G+  D+ TYN+LI   C  G V     +
Sbjct: 402 PNVTTYNCLITGFSRSGDWRSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKL 461

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ + + ++I+G C +  I  A  + T+++    + NV+TY+  I   C+
Sbjct: 462 LDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRTRMEKCRKRANVVTYNVFIKYFCQ 521

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            G    A +L  EM +          PN +TY TI +G+ ++G+
Sbjct: 522 IGKMDEANDLLNEMLDK------CLVPNGITYETIKEGMMEKGY 559



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N+L G L         + L   ++  GL P+  TYN +I  FC  G +   + +  
Sbjct: 439 VVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTYNTIIQGFCDKGNIKSAYEIRT 498

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R+ +     + V +   IK  C   ++ EA  L  ++      PN ITY T+  G+   G
Sbjct: 499 RMEKCRKRANVVTYNVFIKYFCQIGKMDEANDLLNEMLDKCLVPNGITYETIKEGMMEKG 558

Query: 227 HT 228
           +T
Sbjct: 559 YT 560


>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
           [Vitis vinifera]
 gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
          Length = 890

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L+K    D + +++  L +  + P++YT+N ++N +CK+G V    + 
Sbjct: 157 PTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNAMVNGYCKIGNVVEAELY 216

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +I+++   PD   +TSLI G C    +  A  +F  +   GC+ N ++Y+ LI+GLC 
Sbjct: 217 ASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCE 276

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL LF +M   N      C P   TYT +I  L   G   +A  LF +MK+K  
Sbjct: 277 AGRINEALKLFADMTEDN------CCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGC 330

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TY  LI G C  N  +EA  +L EM ++G+ P VVT+N ++D  CK G +D+A  
Sbjct: 331 EPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFE 390

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+LM      PNT T++ L+ G C   +V+ A  L   M       ++ +Y
Sbjct: 391 ILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITY 442



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 150/286 (52%), Gaps = 7/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           NL+ G L +    +  L LF  +      P + TY +LI      GR      +   +  
Sbjct: 269 NLIHG-LCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKE 327

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+   +T LI GLC E+++ EA  + +++   G  P+V+TY+ LI+G C+ G    
Sbjct: 328 KGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDD 387

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  + + M + +      C PNT TY  +I GLCK+  V KA  L  +M ++ ++P ++T
Sbjct: 388 AFEILDLMESNS------CGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLIT 441

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YNSLIHG C  ND   A  LL  M + G+ PD  T++V +D LCK G+++EA  L + + 
Sbjct: 442 YNSLIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVK 501

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +GV  N   ++ L+DG+C  G+++ A  L   M +  C    ++Y
Sbjct: 502 AKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTY 547



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ M   +   P + ++ +L   L K    D    +   ++  GL P + TYN L
Sbjct: 317 EALNLFNEM-KEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNAL 375

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK G +   F +L  +  +   P+   +  LI GLC + ++ +A AL  K+     
Sbjct: 376 IDGYCKEGMIDDAFEILDLMESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKL 435

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITY++LI+G C+      A  L   M N NG       P+  TY+  ID LCKEG 
Sbjct: 436 SPSLITYNSLIHGQCKVNDLESAYRLLSLM-NENGLV-----PDQWTYSVFIDTLCKEGR 489

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A  LF  +K K +  + V Y +LI G+C     + A  LL  M++    P+  T+NV
Sbjct: 490 VEEAGTLFDSVKAKGVKANEVIYTALIDGYCKVGKIDVAYSLLERMLNDACLPNSYTYNV 549

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK  KM EAS L+  M+  GV P   T++ L+      G  +HA ++F  M S+G
Sbjct: 550 LIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLG 609

Query: 389 CKHTVFSY 396
            +  V +Y
Sbjct: 610 YQPDVCTY 617



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 147/307 (47%), Gaps = 7/307 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF I D M       P   ++N L   L K +     ++L  ++    L P L TYN 
Sbjct: 386 DDAFEILDLM-ESNSCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSPSLITYNS 444

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK+  +   + +L  +  +   PD   ++  I  LC E R+ EA  LF  +KA G
Sbjct: 445 LIHGQCKVNDLESAYRLLSLMNENGLVPDQWTYSVFIDTLCKEGRVEEAGTLFDSVKAKG 504

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K N + Y+ LI+G C+ G   VA +L E M N        C PN+ TY  +I+GLCKE 
Sbjct: 505 VKANEVIYTALIDGYCKVGKIDVAYSLLERMLND------ACLPNSYTYNVLIEGLCKEK 558

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A  L  +M    + P VVTY  LI        ++ A  +   M+  G QPDV T+ 
Sbjct: 559 KMKEASSLVAKMLTMGVKPTVVTYTILIGEMLKDGAFDHALKVFNHMVSLGYQPDVCTYT 618

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             +      G ++E   ++  M   G+ P+  T++ L+DG+   G  + A +    M   
Sbjct: 619 AFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLGLTHRAFDFLKCMVDT 678

Query: 388 GCKHTVF 394
           GCK +++
Sbjct: 679 GCKPSLY 685



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 89/274 (32%), Positives = 143/274 (52%), Gaps = 9/274 (3%)

Query: 126 VLSLFKRLNSTGLF---PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
           VL +F+++N+ G F   P L  YN ++    K   +     V   +L +  +P+   F +
Sbjct: 140 VLEVFRKMNADGEFKFKPTLRCYNTILMSLSKFLLIDEMKTVYLELLNNQISPNIYTFNA 199

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           ++ G C    ++EA    +K+   G  P+  TY++LI G CR      A  +F  M    
Sbjct: 200 MVNGYCKIGNVVEAELYASKIVQAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKG 259

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                 C+ N V+YT +I GLC+ G +++A +LF  M + N  P V TY  LI+    + 
Sbjct: 260 ------CQRNEVSYTNLIHGLCEAGRINEALKLFADMTEDNCCPTVRTYTVLIYALSGSG 313

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  L  EM ++G +P+V T+ V++D LCK  KMDEA ++L  M  +G+ P+  T++
Sbjct: 314 RKVEALNLFNEMKEKGCEPNVHTYTVLIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYN 373

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+DG+C  G ++ A E+   MES  C     +Y
Sbjct: 374 ALIDGYCKEGMIDDAFEILDLMESNSCGPNTRTY 407



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/325 (25%), Positives = 143/325 (44%), Gaps = 25/325 (7%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ + + MLN    P   T +N+L   L K K      SL  ++ + G+ P + TY ILI
Sbjct: 528 AYSLLERMLNDACLPNSYT-YNVLIEGLCKEKKMKEASSLVAKMLTMGVKPTVVTYTILI 586

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
               K G   H   V   ++   + PD   +T+ +    ++  + E   +  K+   G  
Sbjct: 587 GEMLKDGAFDHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGIL 646

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+++TY+ LI+G  R G T  A +  + M +        CKP+    + +I  L  E  +
Sbjct: 647 PDLVTYTVLIDGYARLGLTHRAFDFLKCMVDTG------CKPSLYIVSILIKNLSHENRM 700

Query: 270 DKAK------------------ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
            + +                  +LF +M +     DV  Y +LI GFC      EA  L+
Sbjct: 701 KETRSEIGIDSVSNTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLV 760

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M ++G+ P    +N ++D  CK G   EA RL++ M+  G+ P   ++  L+ G  + 
Sbjct: 761 HHMKERGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIE 820

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G    AK +F  + S G  +   ++
Sbjct: 821 GSNEKAKAVFHGLLSCGYNYDEVAW 845



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 75/299 (25%), Positives = 128/299 (42%), Gaps = 25/299 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F++M+++   P   T    L    ++    + V  +  ++N  G+ PDL TY +
Sbjct: 596 DHALKVFNHMVSLGYQPDVCTYTAFLHAYFSQGM-LEEVDDVIAKMNEEGILPDLVTYTV 654

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME------------ 195
           LI+ + ++G     F  L  ++ +   P     + LIK L  E+R+ E            
Sbjct: 655 LIDGYARLGLTHRAFDFLKCMVDTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSN 714

Query: 196 ------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                 A  LF K+   GC  +V  Y  LI G C+      A  L   M           
Sbjct: 715 TLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERG------M 768

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+   Y +++D  CK G   +A  L   M +  + P + +Y  L+ G        +A  
Sbjct: 769 SPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEKAKA 828

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +   ++  G   D V + V++D L K   +DE S L+++M  +G  PN  T+S L++G 
Sbjct: 829 VFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEGL 887



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 39/125 (31%), Positives = 54/125 (43%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P    +N L  C  K   Y   + L   +   GL P L +Y +L+      G    
Sbjct: 766 RGMSPSEDIYNSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYIEGSNEK 825

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +L   +  D VA+  LI GL     + E + L   ++  GC+PN +TYS LI 
Sbjct: 826 AKAVFHGLLSCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIE 885

Query: 221 GLCRT 225
           GL RT
Sbjct: 886 GLERT 890


>gi|255660786|gb|ACU25562.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 418

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A     +M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKKMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|83744086|gb|ABC42329.1| PPR protein [Oryza sativa Indica Group]
          Length = 761

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 94/314 (29%), Positives = 161/314 (51%), Gaps = 12/314 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A+  +  ML+ R SP  +T ++ +   L K +  D  + +   +   G+ P+  TY  
Sbjct: 213 GKAYSTYHEMLDRRISPDVVT-YSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNCRTYTS 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAV-----AFTSLIKGLCAESRIMEAAALFTK 202
           +++ +C  G+       L ++      PD +      + +L++G   +  ++   AL   
Sbjct: 272 IMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKGALVGMHALLDL 331

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           +   G  P+   Y+ LI    + G    A+ +F +M            P+ VTY  +I  
Sbjct: 332 MVRNGIHPDHYVYNILICAYAKQGKVDEAMLVFSKMRQQG------LNPDAVTYGAVIGI 385

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           LCK G V+ A   F QM D+ ++P  + YNSLIHG C  N W  A  L++EM+D+G+  +
Sbjct: 386 LCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLN 445

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
            + FN I+D  CK G++ E+ +L +LM+  GV P+  T+STL+DG+CL G+++ A +L  
Sbjct: 446 TIFFNSIIDSHCKEGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLS 505

Query: 383 SMESMGCKHTVFSY 396
            M S+G K    +Y
Sbjct: 506 GMVSVGLKPNTVTY 519



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/327 (29%), Positives = 152/327 (46%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N+L    AK    D  + +F ++   GL PD  TY  +I   CK GRV    + 
Sbjct: 339 PDHYVYNILICAYAKQGKVDEAMLVFSKMRQQGLNPDAVTYGAVIGILCKSGRVEDAMLY 398

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCA----------------------------------- 189
             +++    +P  + + SLI GLC                                    
Sbjct: 399 FEQMIDEGLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCK 458

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E R++E+  LF  +   G KP++ITYSTLI+G C  G    A+ L       +G   V  
Sbjct: 459 EGRVIESEKLFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLL------SGMVSVGL 512

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KPNTVTY T+I+G CK   +  A  LF +M+   ++PD++TYN ++ G         A  
Sbjct: 513 KPNTVTYRTLINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKE 572

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L + + + G Q ++ T+N+I+  LCKN   D+A R+ + + L  +     TF+ ++D   
Sbjct: 573 LYVRITESGTQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALL 632

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             GR   AK+LFV+  S G     ++Y
Sbjct: 633 KVGRNGEAKDLFVAFSSNGLVPNYWTY 659



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 151/294 (51%), Gaps = 14/294 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---LFPDLYT 144
            +A  +FD +L  R     +   N     +A+      V S + R+   G   + P ++T
Sbjct: 32  EDARHVFDELLR-RGRGASIYGLNRALADVARHSPAAAV-SRYNRMARAGAGKVTPTVHT 89

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKL 203
           Y ILI C C+  R+  GF  LG +++  F  +A+ FT L+KGLCA+ R  +A  +   ++
Sbjct: 90  YAILIGCCCRADRLDLGFAALGNVVKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRM 149

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
               C P+V + + L+ GLC    +  AL L   MA+G G       P+ V+YTT+I+G 
Sbjct: 150 TELSCMPDVFSCTILLKGLCDENRSQEALELPHMMADGRGGGSA---PDVVSYTTVINGF 206

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            KEG   KA   + +M D+ I+PDVVTY+S+I   C     ++A  +L  M+  GV P+ 
Sbjct: 207 FKEGDSGKAYSTYHEMLDRRISPDVVTYSSIIAALCKGQAMDKAMEVLTSMVKNGVMPNC 266

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGV-----NPNTSTFSTLMDGFCLTG 372
            T+  IM   C +G+  EA   L+ +   GV      P+ +T+ TL+ G+   G
Sbjct: 267 RTYTSIMHGYCSSGQPKEAIGFLKKVRSDGVEPDGLEPDIATYCTLLQGYATKG 320



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 128/279 (45%), Gaps = 9/279 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           E+  +FD M+ +   P  +T   L+ G CLA     D  + L   + S GL P+  TY  
Sbjct: 464 ESEKLFDLMVRIGVKPDIITYSTLIDGYCLAG--KMDEAMKLLSGMVSVGLKPNTVTYRT 521

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK+ R+    V+   +  S  +PD + +  +++GL    R   A  L+ ++   G
Sbjct: 522 LINGYCKISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESG 581

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  + TY+ +++GLC+   T  AL +F+ +   + K          T+  +ID L K G
Sbjct: 582 TQIELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKL------EARTFNIMIDALLKVG 635

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AK+LF+      + P+  TY  +           E + L + M D G   D    N
Sbjct: 636 RNGEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLN 695

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            I+ EL + G++  A   L ++  +  +   ST S  +D
Sbjct: 696 FIVRELLQRGEITRAGTYLSMIDEKHFSLEASTASLFID 734



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 114/249 (45%), Gaps = 6/249 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   G+ PD+ TY+ LI+ +C  G++     +L  ++     P+ V + +LI G C
Sbjct: 468 LFDLMVRIGVKPDIITYSTLIDGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYRTLINGYC 527

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             SR+ +A  LF ++++ G  P++ITY+ ++ GL +T  T  A  L+  +     +    
Sbjct: 528 KISRMGDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQI--- 584

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                 TY  I+ GLCK    D A  +F  +   ++  +  T+N +I          EA 
Sbjct: 585 ---ELSTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNGEAK 641

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L +     G+ P+  T+ ++ + +   G ++E  +L   M   G   ++   + ++   
Sbjct: 642 DLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVREL 701

Query: 369 CLTGRVNHA 377
              G +  A
Sbjct: 702 LQRGEITRA 710


>gi|297839331|ref|XP_002887547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297333388|gb|EFH63806.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 763

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/320 (34%), Positives = 161/320 (50%), Gaps = 30/320 (9%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +++  P P  +T   L++G    +K  +  + L K +N  GL PD +TYN LI  +CK G
Sbjct: 277 LIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNE-GLEPDSFTYNTLIAGYCKGG 335

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V     +L   + + F PD   + SLI GLC E     A ALF +    G KPNVI Y+
Sbjct: 336 MVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGKGIKPNVILYN 395

Query: 217 TLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVVCK----------- 250
           TLI GL   G  + A  L  EM+               NG  K G V             
Sbjct: 396 TLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISK 455

Query: 251 ---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+  T+  +I G   +  ++ A E+   M D  ++PDV TYNSL++G C  + + + 
Sbjct: 456 GYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDV 515

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                 M+++G  P++ TFN++++ LC+  K+D+A  LLE M  + VNP+  TF TL+DG
Sbjct: 516 METYKTMVEKGCAPNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDG 575

Query: 368 FCLTGRVNHAKELFVSMESM 387
           FC  G ++ A  LF  ME +
Sbjct: 576 FCKNGDLDGAYTLFRKMEEV 595



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P L ++N     L +    D  + +  RL   G  PD+ TYN LI   CK  +   
Sbjct: 245 RGVLPNLFTYNFFIQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQE 304

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
             V LG+++     PD+  + +LI G C    +  A  +       G  P+  TY +LI+
Sbjct: 305 AEVYLGKLVNEGLEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLID 364

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           GLC  G T  AL LF E A G G      KPN + Y T+I GL  +G + +A +L  +M 
Sbjct: 365 GLCHEGETNRALALFNE-ALGKG-----IKPNVILYNTLIKGLSNQGLILEAAQLASEMS 418

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K + P+V T+N L++G C     ++A+ L+  M+ +G  PD+ TFN+++       KM+
Sbjct: 419 EKGLIPEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKME 478

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  +L++M+  GV+P+  T+++L++G C T +     E + +M   GC   +F++
Sbjct: 479 NALEILDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTF 534



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 153/291 (52%), Gaps = 8/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L++FN L   L K         L  ++   G+ P+L+TYN  I   C+ G +     ++G
Sbjct: 216 LSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQGLCQKGELDAAVRMVG 275

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R++     PD V +  LI GLC  S+  EA     KL   G +P+  TY+TLI G C+ G
Sbjct: 276 RLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYNTLIAGYCKGG 335

Query: 227 HTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
              +A  +       N  F G V  P+  TY ++IDGLC EG  ++A  LF +   K I 
Sbjct: 336 MVQLAERILV-----NAVFNGFV--PDEFTYRSLIDGLCHEGETNRALALFNEALGKGIK 388

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+V+ YN+LI G        EA  L  EM ++G+ P+V TFN++++ LCK G + +A  L
Sbjct: 389 PNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNILVNGLCKMGCVSDADGL 448

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++MI +G  P+  TF+ L+ G+    ++ +A E+   M   G    V++Y
Sbjct: 449 VKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMMDNGVDPDVYTY 499



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L  + ++D    ++ R+   G+ PD+Y++ I
Sbjct: 93  QEAVNVFERM-DFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPDVYSFTI 151

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +  FC+  R      +L  +       + VA+ +++ G   E+   E   LF K+ A G
Sbjct: 152 RMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKDEGYELFGKMLASG 211

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
               + T++ L++ LC+ G       L +++     K GV+  PN  TY   I GLC++G
Sbjct: 212 VSLCLSTFNKLLHVLCKKGDVKECEKLLDKVI----KRGVL--PNLFTYNFFIQGLCQKG 265

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  +  ++ D+   PDVVTYN LI+G C  + + EA   L +++++G++PD  T+N
Sbjct: 266 ELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEPDSFTYN 325

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   CK G +  A R+L   +  G  P+  T+ +L+DG C  G  N A  LF      
Sbjct: 326 TLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGETNRALALFNEALGK 385

Query: 388 GCKHTVFSY 396
           G K  V  Y
Sbjct: 386 GIKPNVILY 394



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 143/285 (50%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L K         L K + S G FPD++T+NILI+ +    ++ +   +
Sbjct: 424 PEVQTFNILVNGLCKMGCVSDADGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEI 483

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ +   PD   + SL+ GLC  S+  +    +  +   GC PN+ T++ L+  LCR
Sbjct: 484 LDVMMDNGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGCAPNLFTFNILLESLCR 543

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD-KN 283
                 AL L EEM N +        P+ VT+ T+IDG CK G +D A  LF +M++   
Sbjct: 544 YHKLDKALGLLEEMKNKS------VNPDAVTFGTLIDGFCKNGDLDGAYTLFRKMEEVYM 597

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++    TYN +IH F    +   A  L  EM+D+ + PD  T+ +++D  CK G +D   
Sbjct: 598 VSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDRCLGPDGYTYRLMVDGFCKTGNVDLGY 657

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + L  M+  G  P+ +T   +++  C+  RV  A  +   M   G
Sbjct: 658 KFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQKG 702



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 6/273 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    LF ++ ++G+   L T+N L++  CK G V     +L ++++    P+   +   
Sbjct: 198 DEGYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFF 257

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I+GLC +  +  A  +  +L   G KP+V+TY+ LI GLC+      A     ++ N   
Sbjct: 258 IQGLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEG- 316

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                 +P++ TY T+I G CK G V  A+ + +        PD  TY SLI G C+  +
Sbjct: 317 -----LEPDSFTYNTLIAGYCKGGMVQLAERILVNAVFNGFVPDEFTYRSLIDGLCHEGE 371

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            N A  L  E + +G++P+V+ +N ++  L   G + EA++L   M  +G+ P   TF+ 
Sbjct: 372 TNRALALFNEALGKGIKPNVILYNTLIKGLSNQGLILEAAQLASEMSEKGLIPEVQTFNI 431

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++G C  G V+ A  L   M S G    +F++
Sbjct: 432 LVNGLCKMGCVSDADGLVKVMISKGYFPDIFTF 464



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/254 (27%), Positives = 118/254 (46%), Gaps = 10/254 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  T +    A  I D M++     P + ++N L   L KT  Y+ V+  +K +   G 
Sbjct: 469 HGYSTQLKMENALEILDVMMD-NGVDPDVYTYNSLLNGLCKTSKYEDVMETYKTMVEKGC 527

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+L+T+NIL+   C+  ++     +L  +      PDAV F +LI G C    +  A  
Sbjct: 528 APNLFTFNILLESLCRYHKLDKALGLLEEMKNKSVNPDAVTFGTLIDGFCKNGDLDGAYT 587

Query: 199 LFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
           LF K++  +    +  TY+ +I+      +  +A  LF+EM +          P+  TY 
Sbjct: 588 LFRKMEEVYMVSCSTPTYNIIIHAFTEKLNVTMAEKLFQEMVDR------CLGPDGYTYR 641

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++DG CK G VD   +  L+M +    P + T   +I+  C  +   EA  ++  M+ +
Sbjct: 642 LMVDGFCKTGNVDLGYKFLLEMMENGFIPSLTTLGRVINCLCVEDRVYEAAGIIHRMVQK 701

Query: 318 GVQPDVVTFNVIMD 331
           G+ P+ V  N I D
Sbjct: 702 GLVPEAV--NTIFD 713



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 6/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G+V     V  R+      P   ++ +++  L       +A  ++ +++  G  P+
Sbjct: 86  YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYMRMRDRGITPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V +++  +   CRT     AL L   M++        C+ N V Y T++ G  +E F D+
Sbjct: 146 VYSFTIRMKSFCRTSRPHAALRLLNNMSSQG------CEMNVVAYCTVVGGFYEENFKDE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             ELF +M    ++  + T+N L+H  C   D  E   LL +++ +GV P++ T+N  + 
Sbjct: 200 GYELFGKMLASGVSLCLSTFNKLLHVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNFFIQ 259

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G++D A R++  +I +G  P+  T++ L+ G C   +   A+     + + G + 
Sbjct: 260 GLCQKGELDAAVRMVGRLIDQGPKPDVVTYNYLIYGLCKNSKFQEAEVYLGKLVNEGLEP 319

Query: 392 TVFSY 396
             F+Y
Sbjct: 320 DSFTY 324



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/196 (24%), Positives = 87/196 (44%), Gaps = 6/196 (3%)

Query: 194 MEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           M+A  +F  + K  G K  + TY ++I  L   G       +  +M    G   +     
Sbjct: 21  MKALEMFNSMRKEDGFKHTLSTYRSIIEKLGLYGKFEAMEEVLVDMRQNVGNHML----- 75

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y   +    ++G V +A  +F +M   +  P V +YN+++     +  +++A+ + +
Sbjct: 76  EGVYVGAMKNYGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSILVDSGYFDQAHKVYM 135

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M D+G+ PDV +F + M   C+  +   A RLL  M  +G   N   + T++ GF    
Sbjct: 136 RMRDRGITPDVYSFTIRMKSFCRTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEEN 195

Query: 373 RVNHAKELFVSMESMG 388
             +   ELF  M + G
Sbjct: 196 FKDEGYELFGKMLASG 211


>gi|255660826|gb|ACU25582.1| pentatricopeptide repeat-containing protein [Phyla dulcis]
          Length = 418

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K+++ V + ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LVKLKYFNLVWAFYEEILECGYPASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LFE
Sbjct: 171 VVSYNTLMNGYIRLGDLNEGFKLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFE 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 231 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEVYKQMLSQSLLPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C     N+A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 285 GLCKKGALNQAHDLMDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S G K    +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMMREMLSFGLKPDTGTY 384



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 155/285 (54%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G ++ GF 
Sbjct: 133 PASLYFFNILMHRFCKEGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFK 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G +++A +L  +M  K 
Sbjct: 253 KNGRVDLAMEVYKQMLSQS------LLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  M+  G+ P+T T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMMREMLSFGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDG 411



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 95/284 (33%), Positives = 152/284 (53%), Gaps = 16/284 (5%)

Query: 79  QGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           +GDI       A  +FD +    +RPS   + S+N L     +    +    L   ++++
Sbjct: 149 EGDIRL-----AQSVFDAITKWGLRPS---VVSYNTLMNGYIRLGDLNEGFKLKSAMHAS 200

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A
Sbjct: 201 GVQPDVYTYSVLINGLCKESKMDDANELFEEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 260

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             ++ ++ +    P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TY
Sbjct: 261 MEVYKQMLSQSLLPDLITYNTLIYGLCKKGALNQAHDLMDEMSMKG------LKPDKITY 314

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+IDG CKEG +D A E   +M  +NI  D V Y +LI G C      +A  ++ EM+ 
Sbjct: 315 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLS 374

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
            G++PD  T+ +I++E CK G + + S+LL+ M   G  P+  T
Sbjct: 375 FGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVT 418


>gi|255660810|gb|ACU25574.1| pentatricopeptide repeat-containing protein [Glandularia dissecta]
          Length = 418

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L  EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++ +M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYXQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYXQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLXDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDXVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|255660848|gb|ACU25593.1| pentatricopeptide repeat-containing protein [Citharexylum
           ligustrinum]
          Length = 418

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/274 (35%), Positives = 148/274 (54%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +LI G      + +   L T + A G  P+V T + LINGLC+      A  LF 
Sbjct: 171 VVSFNTLINGYIRLGDLDKGFRLKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  +  +PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKSGRVDLALEIYKQMLRQGYSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L++EM  +G++PD +T+  ++D  CK G ++ A  L + MI   +  
Sbjct: 285 GLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 345 DDVAYTALISGLCQEGRAVDAEKMLREMLSVGLK 378



 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 154/285 (54%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N LIN + ++G +  GF 
Sbjct: 133 PTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLGDLDKGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD    T LI GLC ES++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++G   +AL ++++M            P+ +TY T+I GLC++G + +A++L ++M  K 
Sbjct: 253 KSGRVDLALEIYKQMLRQG------YSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A  L   M+++ ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGRAVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++GFC  G V  A +L   M+  G
Sbjct: 367 KMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDG 411



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 73/221 (33%), Positives = 112/221 (50%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +  +L   L K    D    LF  +   GL P+  T+  LI+  CK GRV     +
Sbjct: 204 PDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHCKSGRVDLALEI 263

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++LR  ++PD + + +LI GLC +  + +A  L  ++   G KP+ ITY+TLI+G C+
Sbjct: 264 YKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKITYTTLIDGSCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L + M   +       + + V YT +I GLC+EG    A+++  +M    +
Sbjct: 324 EGDLETAFELRKRMIEES------IRLDDVAYTALISGLCQEGRAVDAEKMLREMLSVGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            P+  TY  +I+GFC   D   A+ LL EM   G  P VVT
Sbjct: 378 KPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 59/182 (32%), Positives = 105/182 (57%), Gaps = 6/182 (3%)

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           ++ L++  C+ G   +A ++F+ +     K G+  +P+ V++ T+I+G  + G +DK   
Sbjct: 139 FNILMHRFCKEGEIRLAQSVFDAIT----KCGL--RPSVVSFNTLINGYIRLGDLDKGFR 192

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M    ++PDV T   LI+G C  +  +EAN L  EM+D+G+ P+ VTF  ++D  C
Sbjct: 193 LKTAMHASGVHPDVYTNTVLINGLCKESKMDEANELFNEMLDKGLVPNGVTFTTLIDGHC 252

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+G++D A  + + M+ +G +P+  T++TL+ G C  G +  A++L V M   G K    
Sbjct: 253 KSGRVDLALEIYKQMLRQGYSPDLITYNTLIYGLCRKGDLKQARDLIVEMSMKGLKPDKI 312

Query: 395 SY 396
           +Y
Sbjct: 313 TY 314



 Score = 45.8 bits (107), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 50/117 (42%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++M+   P   ++  L     K    +T   L KR+    +  D   Y  LI+  C+ GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGSCKEGDLETAFELRKRMIEESIRLDDVAYTALISGLCQEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
                 +L  +L     P+   +T +I G C +  +  A+ L  +++  G  P V+T
Sbjct: 362 AVDAEKMLREMLSVGLKPENGTYTMIINGFCKQGDVKTASKLLKEMQRDGHVPCVVT 418



 Score = 42.4 bits (98), Expect = 0.40,   Method: Compositional matrix adjust.
 Identities = 20/83 (24%), Positives = 44/83 (53%)

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           E+++ G    +  FN++M   CK G++  A  + + +   G+ P+  +F+TL++G+   G
Sbjct: 126 EILECGYPTSLYFFNILMHRFCKEGEIRLAQSVFDAITKCGLRPSVVSFNTLINGYIRLG 185

Query: 373 RVNHAKELFVSMESMGCKHTVFS 395
            ++    L  +M + G    V++
Sbjct: 186 DLDKGFRLKTAMHASGVHPDVYT 208


>gi|147841262|emb|CAN75614.1| hypothetical protein VITISV_022293 [Vitis vinifera]
          Length = 590

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 160/301 (53%), Gaps = 9/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F++M  +    P L +  +L   LAK +  + V  ++K++   G+ P+++ +N+
Sbjct: 144 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 202

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V     +L  +      PD   + +LI   C +    EA  +  +++  G
Sbjct: 203 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 262

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++TY++LI G CR G    AL LF E+   NG       PN VTYTT+IDG C+  
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI---NG-----ATPNHVTYTTLIDGYCRVN 314

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L   M+ + ++P VVTYNS++   C      +AN LL EM ++ V+PD VT N
Sbjct: 315 DLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCN 374

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CK G M  A ++ + M+  G+ P+  TF  L+ GFC    V+ AKE    M   
Sbjct: 375 TLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA 434

Query: 388 G 388
           G
Sbjct: 435 G 435



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  FN+L     K+   +    L   + S  +FPDL+TYN LI+ +CK G       +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+ R   +PD V + SLI G C E R+ EA  LF ++   G  PN +TY+TLI+G CR
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCR 312

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L E M            P  VTY +I+  LC+EG +  A  L  +M ++ +
Sbjct: 313 VNDLEEALRLREVMEVEG------LHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VT N+LI+ +C   D   A  +  +M++ G++PD  TF  ++   CK  ++D A  
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 345 LLELMILRGVNPNTSTFSTLMDGF 368
            L  M+  G +P+ ST+S L+D +
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSY 450



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 8/279 (2%)

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
           A ++     + +F+ +   G  P L+   +L+N   K    +  + V  +++R    P+ 
Sbjct: 138 ANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNI 197

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
             F  LI   C    + +A  L  ++++    P++ TY+TLI+  C+ G    AL + + 
Sbjct: 198 HIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDR 257

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M  G    GV   P+ VTY ++I G C+EG + +A  LF ++      P+ VTY +LI G
Sbjct: 258 MERG----GV--SPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDG 309

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +C  ND  EA  L   M  +G+ P VVT+N I+ +LC+ GK+ +A+RLL  M  R V P+
Sbjct: 310 YCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPD 369

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T +TL++ +C  G +  A ++   M   G K   F++
Sbjct: 370 NVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF 408



 Score = 76.3 bits (186), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 121/293 (41%), Gaps = 32/293 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I D M     SP  +T  +L++G   +       L LF+ +N  G  P+  TY  L
Sbjct: 250 EALGIQDRMERGGVSPDIVTYNSLIYG-FCREGRMREALRLFREIN--GATPNHVTYTTL 306

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C++  +     +   +      P  V + S+++ LC E +I +A  L  ++     
Sbjct: 307 IDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK--------- 250
           +P+ +T +TLIN  C+ G    A+ + ++M     K     F  +    CK         
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+  TY+ ++D    +   +    L  ++  K +  D+  Y +LI   C
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
             +    A  +   M  +G++ D V +  +     K GK   AS +L+ M  R
Sbjct: 487 KIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKR 539


>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
 gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
          Length = 375

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 151/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L             + L   + S G  PD+ TYN+L+N  CK GR+      
Sbjct: 14  PDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKF 73

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ +    +++ +C+  R M+A  L T++   GC P+V+T++ LIN LCR
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+++ E+M          C PN+++Y  ++ G CKE  +D+A +    M  +  
Sbjct: 134 KGLLGRAIDILEKMPTHG------CTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGC 187

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTYN+++   C     + A  LL ++  +G  P ++T+N ++D L K GK D+A  
Sbjct: 188 YPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M  +G+ P+  T+S+L+ G    G+V  A + F  +E  G K   F+Y
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTY 299



 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/328 (30%), Positives = 163/328 (49%), Gaps = 15/328 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            ++  C  SG G        +A  + D M   R   P + ++N+L   + K    D  + 
Sbjct: 22  LIEATCAESGVG--------QAMKLLDEM-GSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
               + S G  P++ T+NI++   C  GR      +L  ++R   +P  V F  LI  LC
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLC 132

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +  +  A  +  K+   GC PN ++Y+ L++G C+      A+   E M +        
Sbjct: 133 RKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRG------ 186

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ VTY T++  LCK+G VD A EL  Q+  K  +P ++TYN++I G       ++A 
Sbjct: 187 CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAV 246

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  +G++PDV+T++ ++  L + GK++EA +    +   GV PN  T++++M G 
Sbjct: 247 ELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGL 306

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C   + + A +    M S GCK T  SY
Sbjct: 307 CKAQQTDRAIDFLAYMISKGCKPTEVSY 334



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 84/258 (32%), Positives = 136/258 (52%), Gaps = 6/258 (2%)

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           +PD+ TY ILI   C    V     +L  +      PD V +  L+ G+C E R+ EA  
Sbjct: 13  YPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIK 72

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
               + ++G +PNVIT++ ++  +C TG  + A  L  EM          C P+ VT+  
Sbjct: 73  FLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG------CSPSVVTFNI 126

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+ LC++G + +A ++  +M      P+ ++YN L+HGFC     + A   L  M+ +G
Sbjct: 127 LINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRG 186

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PD+VT+N ++  LCK+GK+D A  LL  +  +G +P   T++T++DG    G+ + A 
Sbjct: 187 CYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAV 246

Query: 379 ELFVSMESMGCKHTVFSY 396
           EL   M   G K  V +Y
Sbjct: 247 ELLHEMRGKGLKPDVITY 264



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 74  LNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCR 133

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     +L ++     TP+++++  L+ G C E ++  A      + + GC P+++T
Sbjct: 134 KGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSRGCYPDIVT 193

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+T++  LC+ G    A+ L  ++++        C P  +TY T+IDGL K G  D+A E
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKG------CSPVLITYNTVIDGLSKVGKTDQAVE 247

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K + PDV+TY+SLI G        EA     ++   GV+P+  T+N IM  LC
Sbjct: 248 LLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLC 307

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           K  + D A   L  MI +G  P   +++ L++G    G    A EL   + S G
Sbjct: 308 KAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRG 361



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++ + G  P+  +YN L++ FCK  ++      
Sbjct: 119 PSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQY 178

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V + +++  LC + ++  A  L  +L + GC P +ITY+T+I+GL 
Sbjct: 179 LEIMVSRGCY-PDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLS 237

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L  EM  G G      KP+ +TY+++I GL +EG V++A + F  ++   
Sbjct: 238 KVGKTDQAVELLHEM-RGKG-----LKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFG 291

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+  TYNS++ G C A   + A   L  M+ +G +P  V++ ++++ +   G   EA 
Sbjct: 292 VKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEAL 351

Query: 344 RLLELMILRGVNPNTST 360
            LL  +  RGV   +S 
Sbjct: 352 ELLNELCSRGVVKKSSA 368



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 65/189 (34%), Positives = 104/189 (55%), Gaps = 6/189 (3%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+VITY+ LI   C       A+ L +EM +        CKP+ VTY  +++G+CKEG
Sbjct: 12  CYPDVITYTILIEATCAESGVGQAMKLLDEMGSRG------CKPDVVTYNVLVNGMCKEG 65

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A +    M      P+V+T+N ++   C    W +A  LL EM+ +G  P VVTFN
Sbjct: 66  RLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFN 125

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ LC+ G +  A  +LE M   G  PN+ +++ L+ GFC   +++ A +    M S 
Sbjct: 126 ILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVSR 185

Query: 388 GCKHTVFSY 396
           GC   + +Y
Sbjct: 186 GCYPDIVTY 194



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 69/123 (56%)

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           E+  +  +K   PDV+TY  LI   C  +   +A  LL EM  +G +PDVVT+NV+++ +
Sbjct: 2   EVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGM 61

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK G++DEA + L  M   G  PN  T + ++   C TGR   A++L   M   GC  +V
Sbjct: 62  CKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSV 121

Query: 394 FSY 396
            ++
Sbjct: 122 VTF 124


>gi|414590400|tpg|DAA40971.1| TPA: hypothetical protein ZEAMMB73_404079 [Zea mays]
          Length = 745

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 82/257 (31%), Positives = 138/257 (53%), Gaps = 6/257 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           F  +   GL  D  TY  +IN  C+   +     +L  +       D V +T LI G C 
Sbjct: 384 FDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCK 443

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             ++ EA  +   +   G  PNV+TY+ L +GLC+ G    A  L  EM+N   +     
Sbjct: 444 RGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLEL---- 499

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
             N  TY ++I+GLCK G++++A      M    + PDV TY +LI   C + D + A+ 
Sbjct: 500 --NACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHS 557

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL EM+D+G++P +VT+NV+M+  C +G+++   +LL+ M+ + ++PN +T+++LM  +C
Sbjct: 558 LLQEMLDKGIKPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYC 617

Query: 370 LTGRVNHAKELFVSMES 386
           +   +    E++  M S
Sbjct: 618 IENNMKSTTEIYKGMRS 634



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/288 (30%), Positives = 145/288 (50%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  +   L +    +    L + + +  L  D  TY +LI+ +CK G+++  F +   +
Sbjct: 398 TYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQMHNAM 457

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++   TP+ V +T+L  GLC +  +  A  L  ++   G + N  TY++LINGLC+ G+ 
Sbjct: 458 VQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLCKAGYL 517

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+    +M           KP+  TYTT+ID LCK G +D+A  L  +M DK I P +
Sbjct: 518 EQAMRTMADMDTA------CLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTI 571

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN L++GFC +        LL  M+++ + P+  T+N +M + C    M   + + + 
Sbjct: 572 VTYNVLMNGFCMSGRVEGGKKLLDWMLEKNIHPNAATYNSLMKQYCIENNMKSTTEIYKG 631

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  R V PN +T++ L+ G C    +  A      M   G + T  SY
Sbjct: 632 MRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSY 679



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 159/325 (48%), Gaps = 33/325 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M     S P + ++ +L          +  + L   + + G+ P+   Y  +
Sbjct: 277 DARQLFDEM----ASAPDVVTYGILIHGHCALGELENAVKLLDEMVAGGVEPNATVYTSV 332

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  G +S    V+  +++     D   +T+++ G C +  ++ A   F +++  G 
Sbjct: 333 VALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDLVSARRWFDEMQRKGL 392

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVVCK--- 250
             + +TY+T+INGLCR      A  L +EM                +G  K G + +   
Sbjct: 393 ATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTVLIDGYCKRGKMAEAFQ 452

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      PN VTYT + DGLCK+G V  A EL  +M +K +  +  TYNSLI+G C
Sbjct: 453 MHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSLINGLC 512

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A    +A   + +M    ++PDV T+  ++D LCK+G +D A  LL+ M+ +G+ P   
Sbjct: 513 KAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGIKPTIV 572

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ LM+GFC++GRV   K+L   M
Sbjct: 573 TYNVLMNGFCMSGRVEGGKKLLDWM 597



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 150/308 (48%), Gaps = 15/308 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY-----TYNIL 148
           FD++L   PS P L      +G     +  + VLS      +  LF +L      +YNIL
Sbjct: 207 FDFLLLCLPSAPLLRRLRQ-YGISPSPEACNAVLSRLPLDEAIELFQELPHKNVCSYNIL 265

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  GRV     +   +  +   PD V +  LI G CA   +  A  L  ++ A G 
Sbjct: 266 LKALCDAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLDEMVAGGV 322

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN   Y++++  LC  G    AL + E+M        V+   +   YTT++ G C +G 
Sbjct: 323 EPNATVYTSVVALLCDKGWISDALRVVEDMVQRK----VIL--DEALYTTVLSGFCNKGD 376

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A+  F +M+ K +  D VTY ++I+G C A +  EA  LL EM  + +  D VT+ V
Sbjct: 377 LVSARRWFDEMQRKGLATDGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDEVTYTV 436

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM EA ++   M+ RGV PN  T++ L DG C  G V  A EL   M + G
Sbjct: 437 LIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKG 496

Query: 389 CKHTVFSY 396
            +    +Y
Sbjct: 497 LELNACTY 504



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 147/288 (51%), Gaps = 9/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L   L           LF  + S    PD+ TY ILI+  C +G + +   +L  +
Sbjct: 261 SYNILLKALCDAGRVKDARQLFDEMASA---PDVVTYGILIHGHCALGELENAVKLLDEM 317

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P+A  +TS++  LC +  I +A  +   +       +   Y+T+++G C  G  
Sbjct: 318 VAGGVEPNATVYTSVVALLCDKGWISDALRVVEDMVQRKVILDEALYTTVLSGFCNKGDL 377

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           + A   F+EM     + G+    + VTYTT+I+GLC+   +++A++L  +M  + ++ D 
Sbjct: 378 VSARRWFDEMQ----RKGLAT--DGVTYTTMINGLCRAVELEEAEKLLQEMWARRLDVDE 431

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY  LI G+C      EA  +   M+ +GV P+VVT+  + D LCK G +  A+ LL  
Sbjct: 432 VTYTVLIDGYCKRGKMAEAFQMHNAMVQRGVTPNVVTYTALTDGLCKQGDVQAANELLHE 491

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+  N  T+++L++G C  G +  A      M++   K  V++Y
Sbjct: 492 MSNKGLELNACTYNSLINGLCKAGYLEQAMRTMADMDTACLKPDVYTY 539



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/278 (26%), Positives = 125/278 (44%), Gaps = 7/278 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+  R   P + ++  L   L K         L   +++ GL  +  TYN L
Sbjct: 449 EAFQMHNAMVQ-RGVTPNVVTYTALTDGLCKQGDVQAANELLHEMSNKGLELNACTYNSL 507

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK G +      +  +  +C  PD   +T+LI  LC    +  A +L  ++   G 
Sbjct: 508 INGLCKAGYLEQAMRTMADMDTACLKPDVYTYTTLIDALCKSGDLDRAHSLLQEMLDKGI 567

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP ++TY+ L+NG C +G       L + M   N        PN  TY +++   C E  
Sbjct: 568 KPTIVTYNVLMNGFCMSGRVEGGKKLLDWMLEKN------IHPNAATYNSLMKQYCIENN 621

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +    E++  M+ +++ P+  TYN LI G C A +  EA     EM+ +G +    +++ 
Sbjct: 622 MKSTTEIYKGMRSRDVGPNENTYNILIKGHCKARNMKEALYFHDEMIQKGFRLTATSYSA 681

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           ++  L K  K  EA  L   M   G+   +  +   +D
Sbjct: 682 LIRLLNKKKKFVEARELFHDMRKEGLTAESDVYDFYID 719


>gi|225451899|ref|XP_002279045.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Vitis vinifera]
          Length = 590

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 99/301 (32%), Positives = 160/301 (53%), Gaps = 9/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F++M  +    P L +  +L   LAK +  + V  ++K++   G+ P+++ +N+
Sbjct: 144 QDAIQVFEHM-RVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNIHIFNV 202

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V     +L  +      PD   + +LI   C +    EA  +  +++  G
Sbjct: 203 LIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDRMERGG 262

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++TY++LI G CR G    AL LF E+   NG       PN VTYTT+IDG C+  
Sbjct: 263 VSPDIVTYNSLIYGFCREGRMREALRLFREI---NG-----ATPNHVTYTTLIDGYCRVN 314

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L   M+ + ++P VVTYNS++   C      +AN LL EM ++ V+PD VT N
Sbjct: 315 DLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPDNVTCN 374

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++  CK G M  A ++ + M+  G+ P+  TF  L+ GFC    V+ AKE    M   
Sbjct: 375 TLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKEFLFEMLDA 434

Query: 388 G 388
           G
Sbjct: 435 G 435



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 138/264 (52%), Gaps = 8/264 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  FN+L     K+   +    L   + S  +FPDL+TYN LI+ +CK G       +
Sbjct: 195 PNIHIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGI 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+ R   +PD V + SLI G C E R+ EA  LF ++   G  PN +TY+TLI+G CR
Sbjct: 255 QDRMERGGVSPDIVTYNSLIYGFCREGRMREALRLFREIN--GATPNHVTYTTLIDGYCR 312

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L E M            P  VTY +I+  LC+EG +  A  L  +M ++ +
Sbjct: 313 VNDLEEALRLREVMEVEG------LHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VT N+LI+ +C   D   A  +  +M++ G++PD  TF  ++   CK  ++D A  
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 345 LLELMILRGVNPNTSTFSTLMDGF 368
            L  M+  G +P+ ST+S L+D +
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSY 450



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/279 (30%), Positives = 144/279 (51%), Gaps = 8/279 (2%)

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
           A ++     + +F+ +   G  P L+   +L+N   K    +  + V  +++R    P+ 
Sbjct: 138 ANSRMTQDAIQVFEHMRVHGFKPHLHACTVLLNSLAKARLTNMVWKVYKKMVRVGVVPNI 197

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
             F  LI   C    + +A  L  ++++    P++ TY+TLI+  C+ G    AL + + 
Sbjct: 198 HIFNVLIHACCKSGDVEKAEQLLNEMESRFIFPDLFTYNTLISLYCKKGMHYEALGIQDR 257

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M  G    GV   P+ VTY ++I G C+EG + +A  LF ++      P+ VTY +LI G
Sbjct: 258 MERG----GV--SPDIVTYNSLIYGFCREGRMREALRLFREI--NGATPNHVTYTTLIDG 309

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +C  ND  EA  L   M  +G+ P VVT+N I+ +LC+ GK+ +A+RLL  M  R V P+
Sbjct: 310 YCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKVEPD 369

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T +TL++ +C  G +  A ++   M   G K   F++
Sbjct: 370 NVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTF 408



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/293 (23%), Positives = 121/293 (41%), Gaps = 32/293 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I D M     SP  +T  +L++G   +       L LF+ +N  G  P+  TY  L
Sbjct: 250 EALGIQDRMERGGVSPDIVTYNSLIYG-FCREGRMREALRLFREIN--GATPNHVTYTTL 306

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C++  +     +   +      P  V + S+++ LC E +I +A  L  ++     
Sbjct: 307 IDGYCRVNDLEEALRLREVMEVEGLHPGVVTYNSILRKLCEEGKIKDANRLLNEMSERKV 366

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK--------- 250
           +P+ +T +TLIN  C+ G    A+ + ++M     K     F  +    CK         
Sbjct: 367 EPDNVTCNTLINAYCKIGDMGSAMKVKKKMLEAGLKPDQFTFKALIHGFCKLHEVDSAKE 426

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+  TY+ ++D    +   +    L  ++  K +  D+  Y +LI   C
Sbjct: 427 FLFEMLDAGFSPSYSTYSWLVDSYYDQDNKEAVIRLPDELSRKGLFVDISVYRALIRRLC 486

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
             +    A  +   M  +G++ D V +  +     K GK   AS +L+ M  R
Sbjct: 487 KIDKIESAERIFTLMQGKGMKGDSVVYTSLAYAYFKAGKAIAASDMLDEMDKR 539


>gi|410109901|gb|AFV61030.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           microcephala]
          Length = 431

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/291 (33%), Positives = 157/291 (53%), Gaps = 6/291 (2%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P+ +   +   L K K++  V   ++ +   G    LY +NIL++ FCK G +     V 
Sbjct: 106 PIDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRLAQSVF 165

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             I +    P  V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+ 
Sbjct: 166 DAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKE 225

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                A  LF+EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++
Sbjct: 226 SKMDDANELFDEMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLS 279

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD++TYN+LI+G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A   
Sbjct: 280 PDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEH 339

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + MI   +  +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 340 RKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRLAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQAHHLIDEMSVKG------LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|297803282|ref|XP_002869525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315361|gb|EFH45784.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 707

 Score =  172 bits (437), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/327 (31%), Positives = 154/327 (47%), Gaps = 43/327 (13%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++ +L     K    D  + L K +   GL  DL  Y  LI  FC  G +  G  +  
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGELDRGKALFD 271

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L    +P A+ + +LI+G C   R+ EA+ +F  +   G +PNV TY+ LI+GLC  G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVG 331

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T  AL L   M   +       +PN VTY  II+ LCK+  V  A E+   MK +   P
Sbjct: 332 KTKEALQLLNLMLQKDE------EPNVVTYNIIINKLCKDSLVADALEIVELMKKRRTRP 385

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDELCKNGKMDEASR 344
           D +TYNSL+ G C   D +EA+ LL  M+       PDV++FN ++  LCK  ++ +A  
Sbjct: 386 DNITYNSLLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISFNALIHGLCKGNRLHQALD 445

Query: 345 LLELMILR-----------------------------------GVNPNTSTFSTLMDGFC 369
           + +L++ +                                    + PN+ T++T++DGFC
Sbjct: 446 IYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFC 505

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            TG +N AK L   M       +VF Y
Sbjct: 506 KTGMLNVAKGLLCKMRLSELPPSVFDY 532



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 149/286 (52%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L ++++++   S ++++  T  F +  + + L+ CF +M +      VL  +L+
Sbjct: 76  NNLMATLVRSRNHEVAFSFYRKMLETDTFINFVSLSGLLECFVQMRKTGFAHGVLALMLK 135

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
             F  +   +  L+KGLC      +A +L  +++     P+V++Y+T+I G C       
Sbjct: 136 RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEK 195

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL L  EM  G+G     C  + VT+  +ID  CK G +D+A  L  +MK K +  D++ 
Sbjct: 196 ALQLANEM-QGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIV 249

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y SLI GFC   + +    L  E++++G  P  +T+N ++   CK G++ EAS + E M+
Sbjct: 250 YTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGRLKEASEIFEFMM 309

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RGV PN  T++ L+DG C  G+   A +L   M     +  V +Y
Sbjct: 310 ERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTY 355



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 143/277 (51%), Gaps = 8/277 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N+L   L +   +   +SL + +    L PD+ +YN +I  FC+   +     +   +
Sbjct: 144 NYNILLKGLCRNLEFGKAVSLLREMRQNSLMPDVVSYNTVIRGFCEGKELEKALQLANEM 203

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
             S  +   V +  LI   C   ++ EA  L  ++K  G + ++I Y++LI G C  G  
Sbjct: 204 QGSGCSWSLVTWGILIDAFCKAGKMDEAMGLLKEMKHKGLEADLIVYTSLIRGFCDCGEL 263

Query: 229 IVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
                LF+E +  G+        P  +TY T+I G CK G + +A E+F  M ++ + P+
Sbjct: 264 DRGKALFDEVLERGDS-------PCAITYNTLIRGFCKLGRLKEASEIFEFMMERGVRPN 316

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V TY  LI G C      EA  LL  M+ +  +P+VVT+N+I+++LCK+  + +A  ++E
Sbjct: 317 VYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEEPNVVTYNIIINKLCKDSLVADALEIVE 376

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LM  R   P+  T+++L+ G C  G ++ A +L   M
Sbjct: 377 LMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLM 413



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 143/272 (52%), Gaps = 9/272 (3%)

Query: 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
           F  + KT     VL+L  +    G   ++Y YNIL+   C+         +L  + ++  
Sbjct: 117 FVQMRKTGFAHGVLALMLK---RGFAFNVYNYNILLKGLCRNLEFGKAVSLLREMRQNSL 173

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD V++ ++I+G C    + +A  L  +++  GC  +++T+  LI+  C+ G    A+ 
Sbjct: 174 MPDVVSYNTVIRGFCEGKELEKALQLANEMQGSGCSWSLVTWGILIDAFCKAGKMDEAMG 233

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L +EM +         + + + YT++I G C  G +D+ K LF ++ ++  +P  +TYN+
Sbjct: 234 LLKEMKHKG------LEADLIVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNT 287

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI GFC      EA+ +   MM++GV+P+V T+  ++D LC  GK  EA +LL LM+ + 
Sbjct: 288 LIRGFCKLGRLKEASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKD 347

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
             PN  T++ +++  C    V  A E+   M+
Sbjct: 348 EEPNVVTYNIIINKLCKDSLVADALEIVELMK 379



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/312 (31%), Positives = 159/312 (50%), Gaps = 13/312 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EA  IF++M+     P   T   L+ G   + KTK    +L+L  + +     P++ TYN
Sbjct: 300 EASEIFEFMMERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMLQKDEE---PNVVTYN 356

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKA 205
           I+IN  CK   V+    ++  + +    PD + + SL+ GLCA+  + EA+ L +  LK 
Sbjct: 357 IIINKLCKDSLVADALEIVELMKKRRTRPDNITYNSLLGGLCAKGDLDEASKLLYLMLKD 416

Query: 206 FG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
                P+VI+++ LI+GLC+      AL++++ +     K G     + VT   +++   
Sbjct: 417 SSYTDPDVISFNALIHGLCKGNRLHQALDIYDLLVE---KLGA---GDIVTTNILLNSTL 470

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G V+KA EL+ Q+ +  I P+  TY ++I GFC     N A  LL +M    + P V 
Sbjct: 471 KSGDVNKAMELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVF 530

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +N ++  LCK G +D+A RL E M      P+  +F+ ++DG    G +  A+ L V M
Sbjct: 531 DYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGDIKSAESLLVGM 590

Query: 385 ESMGCKHTVFSY 396
              G    +F+Y
Sbjct: 591 SHAGLSPDLFTY 602



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 131/280 (46%), Gaps = 7/280 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P + SFN L   L K       L ++  L       D+ T NIL+N   K G V+   
Sbjct: 420 TDPDVISFNALIHGLCKGNRLHQALDIYDLLVEKLGAGDIVTTNILLNSTLKSGDVNKAM 479

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +  +I  S   P++  +T++I G C    +  A  L  K++     P+V  Y+ L++ L
Sbjct: 480 ELWKQISNSKIVPNSDTYTTMIDGFCKTGMLNVAKGLLCKMRLSELPPSVFDYNCLLSSL 539

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A  LFEEM   +        P+ +++  +IDG  K G +  A+ L + M   
Sbjct: 540 CKKGTLDQAWRLFEEMQRDDSF------PDVISFNIMIDGSLKAGDIKSAESLLVGMSHA 593

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            ++PD+ TY+ LI+ F      +EA     +M+D G +PD    + ++      G+ D+ 
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDSVLKYCISQGETDKL 653

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHAKELF 381
           +  ++ ++ + V  +     T+MD  C  +G ++ AK L 
Sbjct: 654 TEFVKKLVDKDVVLDKELTCTVMDYMCSSSGNMDIAKRLL 693



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 9/186 (4%)

Query: 100 MRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           MR S  PP +  +N L   L K    D    LF+ +     FPD+ ++NI+I+   K G 
Sbjct: 520 MRLSELPPSVFDYNCLLSSLCKKGTLDQAWRLFEEMQRDDSFPDVISFNIMIDGSLKAGD 579

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  +  +  +PD   ++ LI        + EA + F K+   G +P+     +
Sbjct: 580 IKSAESLLVGMSHAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMIDSGFEPDAHICDS 639

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC-KEGFVDKAKELF 276
           ++      G T       +++ +   K  V+ K  T    T++D +C   G +D AK L 
Sbjct: 640 VLKYCISQGETDKLTEFVKKLVD---KDVVLDKELTC---TVMDYMCSSSGNMDIAKRLL 693

Query: 277 LQMKDK 282
               DK
Sbjct: 694 RVADDK 699


>gi|410109913|gb|AFV61036.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           aristata]
          Length = 431

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTY 425



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQAHHLIDEMSVKG------LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + +  +
Sbjct: 349 RLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGXK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGXKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|4038037|gb|AAC97219.1| hypothetical protein [Arabidopsis thaliana]
          Length = 1107

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/308 (33%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   F  M   R  P    S N L    AK    D V   FK +   G  P ++TYNI+
Sbjct: 78  EAIQCFSKMKRFRVFPKT-RSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNIM 136

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+C CK G V     +   +      PD V + S+I G     R+ +    F ++K   C
Sbjct: 137 IDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 196

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+VITY+ LIN  C+ G   + L  + EM  GNG      KPN V+Y+T++D  CKEG 
Sbjct: 197 EPDVITYNALINCFCKFGKLPIGLEFYREM-KGNG-----LKPNVVSYSTLVDAFCKEGM 250

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A + ++ M+   + P+  TY SLI   C   + ++A  L  EM+  GV+ +VVT+  
Sbjct: 251 MQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTA 310

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC   +M EA  L   M   GV PN ++++ L+ GF     ++ A EL   ++  G
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 370

Query: 389 CKHTVFSY 396
            K  +  Y
Sbjct: 371 IKPDLLLY 378



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 160/318 (50%), Gaps = 12/318 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+ A     A  +F+ M   R   P   ++N +     K    D  +  F+ +     
Sbjct: 143 EGDVEA-----ARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 196

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+ TYN LINCFCK G++  G      +  +   P+ V++++L+   C E  + +A  
Sbjct: 197 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK 256

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            +  ++  G  PN  TY++LI+  C+ G+   A  L      GN    V  + N VTYT 
Sbjct: 257 FYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL------GNEMLQVGVEWNVVTYTA 310

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDGLC    + +A+ELF +M    + P++ +YN+LIHGF  A + + A  LL E+  +G
Sbjct: 311 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 370

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           ++PD++ +   +  LC   K++ A  ++  M   G+  N+  ++TLMD +  +G      
Sbjct: 371 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 430

Query: 379 ELFVSMESMGCKHTVFSY 396
            L   M+ +  + TV ++
Sbjct: 431 HLLDEMKELDIEVTVVTF 448



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 7/305 (2%)

Query: 93  IFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +FD + + R    P    F+ LF  L      +  +  F ++    +FP   + N L++ 
Sbjct: 45  VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 104

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           F K+G+          ++ +   P    +  +I  +C E  +  A  LF ++K  G  P+
Sbjct: 105 FAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 164

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY+++I+G  + G     +  FEEM +      + C+P+ +TY  +I+  CK G +  
Sbjct: 165 TVTYNSMIDGFGKVGRLDDTVCFFEEMKD------MCCEPDVITYNALINCFCKFGKLPI 218

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             E + +MK   + P+VV+Y++L+  FC      +A    ++M   G+ P+  T+  ++D
Sbjct: 219 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 278

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             CK G + +A RL   M+  GV  N  T++ L+DG C   R+  A+ELF  M++ G   
Sbjct: 279 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 338

Query: 392 TVFSY 396
            + SY
Sbjct: 339 NLASY 343



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ L     K       +  +  +   GL P+ YTY  LI+  CK+G +S  F +
Sbjct: 233 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 292

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+     + V +T+LI GLC   R+ EA  LF K+   G  PN+ +Y+ LI+G  +
Sbjct: 293 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 352

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL L  E+  G G      KP+ + Y T I GLC    ++ AK +  +MK+  I
Sbjct: 353 AKNMDRALELLNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 406

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM----------------------------- 315
             + + Y +L+  +  + +  E   LL EM                              
Sbjct: 407 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVD 466

Query: 316 -------DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
                  D G+Q +   F  ++D LCK+ +++ A+ L E M+ +G+ P+ + +++LMDG 
Sbjct: 467 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGN 526

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G V  A  L   M  +G K  + +Y
Sbjct: 527 FKQGNVLEALALRDKMAEIGMKLDLLAY 554



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 5/276 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N L     K K+ D  L L   L   G+ PDL  Y   I   C + ++    VV
Sbjct: 338 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 397

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +       +++ +T+L+          E   L  ++K    +  V+T+  LI+GLC+
Sbjct: 398 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 457

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A++ F  ++N    FG+  + N   +T +IDGLCK+  V+ A  LF QM  K +
Sbjct: 458 NKLVSKAVDYFNRISN---DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 512

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   Y SL+ G     +  EA  L  +M + G++ D++ +  ++  L    ++ +A  
Sbjct: 513 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARS 572

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            LE MI  G++P+     +++      G ++ A EL
Sbjct: 573 FLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL 608



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 143/302 (47%), Gaps = 8/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF + + ML +      +T   L+ G L   +       LF ++++ G+ P+L +YN 
Sbjct: 287 SDAFRLGNEMLQVGVEWNVVTYTALIDG-LCDAERMKEAEELFGKMDTAGVIPNLASYNA 345

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K   +     +L  +      PD + + + I GLC+  +I  A  +  ++K  G
Sbjct: 346 LIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECG 405

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K N + Y+TL++   ++G+    L+L +EM   + +  VV      T+  +IDGLCK  
Sbjct: 406 IKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVV------TFCVLIDGLCKNK 459

Query: 268 FVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            V KA + F ++  D  +  +   + ++I G C  N    A  L  +M+ +G+ PD   +
Sbjct: 460 LVSKAVDYFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAY 519

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             +MD   K G + EA  L + M   G+  +   +++L+ G     ++  A+     M  
Sbjct: 520 TSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIG 579

Query: 387 MG 388
            G
Sbjct: 580 EG 581


>gi|222629097|gb|EEE61229.1| hypothetical protein OsJ_15269 [Oryza sativa Japonica Group]
          Length = 855

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 152/302 (50%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   G+ PD+YTY ILI+ FCK G +     +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     +P  V +T+LI       ++ +A  +F ++   GC+PN +TY  L++GLC+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 225 TGHTIVALNLFEEMA----NGNGKFGVVCK------PNTVTYTTIIDGLCKEGFVDKAKE 274
            G+   A  ++ ++     + +  F   C+      PN VTY  ++DGLCK   VD A E
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y++LI GFC A   + A  + ++M   G  P V T+  ++D + 
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+G++D A ++L  M+     PN  T++ ++DG C  G    A +L   ME  GC   V 
Sbjct: 526 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585

Query: 395 SY 396
           +Y
Sbjct: 586 TY 587



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 160/329 (48%), Gaps = 23/329 (6%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A    +AF +F  M  M    P + ++ +L     K    +    LF+ + S G  P + 
Sbjct: 301 ATKVEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 359

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY  LI+ + K  +V     +  R++ +   P+ V + +L+ GLC    I +A  ++ KL
Sbjct: 360 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419

Query: 204 KA----------FGCK------PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
                       F C+      PNV+TY  L++GLC+      A  L + M +       
Sbjct: 420 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG----- 474

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C+PN + Y  +IDG CK G +D A+E+FLQM      P V TY SLI         + A
Sbjct: 475 -CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 533

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L +M+     P+VVT+  ++D LC+ G+ ++A +LL LM  +G +PN  T++ L+DG
Sbjct: 534 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 593

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               G+++ + +LF  M   GC     +Y
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   +T LI   C    I +A  LF ++++ GC P V+TY+ LI+   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---------------K 280
             M +        C+PN VTY  ++DGLCK G + KA E++ ++               +
Sbjct: 382 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 435

Query: 281 DKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           D++ + P+VVTY +L+ G C A+  + A+ LL  M+  G +P+ + ++ ++D  CK GK+
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D A  +   M   G  P+  T+++L+D     GR++ A ++   M    C   V +Y
Sbjct: 496 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTY 552



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 156/315 (49%), Gaps = 23/315 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+ M ++  SP  +T   L+   L K K       +F R+   G  P+  TY  
Sbjct: 340 EQAQWLFEEMRSVGCSPTVVTYTALIHAYL-KAKQVPQANDIFHRMVDAGCRPNDVTYGA 398

Query: 148 LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDAVAFTSLIKGLCAES 191
           L++  CK G +S  F V  +++                R    P+ V + +L+ GLC   
Sbjct: 399 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 458

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++  A  L   + + GC+PN I Y  LI+G C+ G    A  +F +M     K G +  P
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--P 512

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  TYT++ID + K+G +D A ++  QM   +  P+VVTY ++I G C   +  +A  LL
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M ++G  P+VVT+  ++D L K GK+D +  L   M  +G +PN  T+  L++  C  
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 372 GRVNHAKELFVSMES 386
           G ++ A+ L   M+ 
Sbjct: 633 GLLDKARLLLGEMKQ 647



 Score =  125 bits (315), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 42/328 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  + D ML+    P  +  ++ L     K    D+   +F ++   G  P ++TY  
Sbjct: 461 DHAHELLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K GR+     VL ++L+   TP+ V +T++I GLC      +A  L + ++  G
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+ LI+GL + G   ++L+LF +M+         C PN VTY  +I+ LC  G
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAG 633

Query: 268 FVDKAKELFLQMKDK---------------------------------NINPDVVTYNSL 294
            +DKA+ L  +MK                                      P    Y  L
Sbjct: 634 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGML 693

Query: 295 IHGFCYANDWNEANCLLIEMMD--QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           I  F  A     A  L  EMM+    V+ D   +  ++  LC   +++EA RL   M  R
Sbjct: 694 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 753

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           G  P  S F  L+ G     + + A +L
Sbjct: 754 GFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 12/286 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 117 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI------V 230
              F SL+   C E     A  L  ++   GC P  + Y+  I  +C            +
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 236

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  ++ EM   N      C  N V        LC  G  DKA +L  +M  K   PD  T
Sbjct: 237 AEKIYGEMLAAN------CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTST 290

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y+ +I   C+A    +A  L  EM   GV PDV T+ +++D  CK G +++A  L E M 
Sbjct: 291 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 350

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +P   T++ L+  +    +V  A ++F  M   GC+    +Y
Sbjct: 351 SVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 141/327 (43%), Gaps = 38/327 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L+     D    + K ++ +G   D +T     +  CK GR +     
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I R  F  D V  T +I GL   S   EA +   +++   C PNV+TY TL++G  +
Sbjct: 95  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 154

Query: 225 TGH-----TIVAL----------NLFEEMANG--------------NGKFGVVCKPNTVT 255
                    I+ +          +LF  + +               N      C P  V 
Sbjct: 155 KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVV 214

Query: 256 YTTIIDGLCKE------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           Y   I  +C +        +D A++++ +M   N   + V   +     C    +++A  
Sbjct: 215 YNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L+ EMM +G  PD  T++ ++  LC   K+++A  L + M + GV P+  T++ L+D FC
Sbjct: 275 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC 334

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  A+ LF  M S+GC  TV +Y
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTY 361



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---GKFGVVCKPNTVTYTTI 259
           LK FG +P+ +TY+ L+  L   G   +   + +EM+       +F V C          
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGC---------F 81

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
              LCKEG    A ++   ++ ++   D V    +I G   A+ ++EA   L  M     
Sbjct: 82  AHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC 138

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT+  ++    K  ++    R++ +M+  G NPN S F++L+  +C      +A +
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 198

Query: 380 LFVSMESMGC 389
           L   M + GC
Sbjct: 199 LLNRMTTCGC 208


>gi|302767472|ref|XP_002967156.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
 gi|300165147|gb|EFJ31755.1| hypothetical protein SELMODRAFT_144844 [Selaginella moellendorffii]
          Length = 651

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 154/329 (46%), Gaps = 43/329 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K   +D    + + + + G  PD  T++ LI+  CK G     F V
Sbjct: 76  PDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCKFGSEEQAFRV 135

Query: 165 L------------------------------------GRILRSCFTPDAVAFTSLIKGLC 188
           L                                    G ++   FTP  + F  +I G C
Sbjct: 136 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFC 195

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               +  A  L   +   GC PNV T++ LI GLC+      A  L E+M  G       
Sbjct: 196 KAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGG------ 249

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C PN VTY+T+I+GLCK+G VD A ELF  M+ +N  P+VVT+N LI G C A    EA 
Sbjct: 250 CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEAR 309

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN-PNTSTFSTLMDG 367
            L   M + G  PD++T+N ++D LCK+ ++DEA +L + +   GV+  N  T+STL  G
Sbjct: 310 QLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 369

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   GR+  A  +F  +   G    + +Y
Sbjct: 370 YAALGRMADACRIFSMLVDKGFSPDLATY 398



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/322 (29%), Positives = 151/322 (46%), Gaps = 31/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++ +L    +     D  + L + + S G   +   +  L+   C  GRV      
Sbjct: 7   PNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEALEH 66

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + + C  PD + +T+L+  LC   +  EA  +  ++ A GC P+ +T+STLI+GLC+
Sbjct: 67  FRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDGLCK 125

Query: 225 TGHTIVALNLFEE-----MANGNGKF---------------------GVVCK----PNTV 254
            G    A  + E+     M N +  F                     GVV      P  +
Sbjct: 126 FGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVL 185

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            +  +I+G CK   +D A +L   M +K   P+V T+  LI G C AN   EA  LL +M
Sbjct: 186 MFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKM 245

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +  G  P+VVT++ +++ LCK G++D+A  L +LM  R   PN  T + L+DG C   R+
Sbjct: 246 VTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRI 305

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A++L+  M   GC   + +Y
Sbjct: 306 EEARQLYHRMRETGCAPDIITY 327



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 150/293 (51%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  FNL+     K K  D+   L + +   G  P+++T+ ILI   CK  RV     +
Sbjct: 182 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 241

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++    +P+ V ++++I GLC + ++ +A  LF  ++   C PNV+T++ LI+GLC+
Sbjct: 242 LEKMVTGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 301

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L+  M          C P+ +TY ++IDGLCK   VD+A +LF  + +  +
Sbjct: 302 AKRIEEARQLYHRMRETG------CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 355

Query: 285 NP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  + VTY++L HG+       +A  +   ++D+G  PD+ T+  ++ E CK  +  E  
Sbjct: 356 SAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVV 415

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+E M  +G  P  +T S ++ G         A +LF SM + GC      Y
Sbjct: 416 ELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIY 468



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 161/369 (43%), Gaps = 69/369 (18%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +F  M   R  PP + + N+L   L K K  +    L+ R+  TG  PD+ TYN 
Sbjct: 271 DDAYELFQLM-ERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 329

Query: 148 LINCFCKMGRVS--------------------------HGFVVLGRILRSC--------- 172
           LI+  CK  +V                           HG+  LGR+  +C         
Sbjct: 330 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 389

Query: 173 -FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
            F+PD   +TSLI   C  SR +E   L  ++ + G  P V T S ++ GL    HT  A
Sbjct: 390 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 449

Query: 232 LNLFEEMA----------------------NGNGKFGVVCK----------PNTVTYTTI 259
           + LF+ MA                        N    V+ +          P++     +
Sbjct: 450 IQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDKRDRKFNPSSSAVDAL 509

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++ LC+ G  D AK+L  +M ++     V +YN L+ G      W+EA  +   M+  G 
Sbjct: 510 VESLCQVGRTDDAKQLLHKMSERGFAAAVSSYNGLLSGLSRLQRWDEATQVFEAMVSAGP 569

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P++ T NV++  LC   K+D+A  L++ M   G  P+  T +TL+ G+C +GR + A++
Sbjct: 570 APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARK 629

Query: 380 LFVSMESMG 388
           L   M   G
Sbjct: 630 LLEEMTEAG 638



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 155/347 (44%), Gaps = 44/347 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ + + M+  +   P + +F +L   L K         L +++ + G  P++ TY+ 
Sbjct: 201 DSAYKLLEVMIE-KGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVTGGCSPNVVTYST 259

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK G+V   + +   + R    P+ V    LI GLC   RI EA  L+ +++  G
Sbjct: 260 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 319

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++ITY++LI+GLC++     A  LF+ +         V   N VTY+T+  G    G
Sbjct: 320 CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG-----VSAANAVTYSTLFHGYAALG 374

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFC---------------------------- 299
            +  A  +F  + DK  +PD+ TY SLI  +C                            
Sbjct: 375 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLS 434

Query: 300 -------YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL- 351
                    N    A  L   M  +G   D + +N++++ + +  K ++A  +LE +I  
Sbjct: 435 AVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHNKALAVLEQVIDK 494

Query: 352 --RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             R  NP++S    L++  C  GR + AK+L   M   G    V SY
Sbjct: 495 RDRKFNPSSSAVDALVESLCQVGRTDDAKQLLHKMSERGFAAAVSSY 541



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/162 (40%), Positives = 94/162 (58%), Gaps = 7/162 (4%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN  TY  LI G    G   +A+ L EEM + NG  G     N V +TT++ GLC  G
Sbjct: 5   CMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKS-NGFEG-----NAVVHTTLMKGLCDAG 58

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A E F  M  K+  PDV+TY +L+H  C A  ++EA  +L EM+ +G  PD VTF+
Sbjct: 59  RVVEALEHFRAMA-KDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFS 117

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            ++D LCK G  ++A R+LE +I RG+  + + F T++   C
Sbjct: 118 TLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLC 159



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 50/130 (38%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C PN  TY  +I G    G +D A +L  +MK      + V + +L+ G C A    EA
Sbjct: 4   ICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSNGFEGNAVVHTTLMKGLCDAGRVVEA 63

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                  M +   PDV+T+  ++  LCK GK DEA  +L  MI RG  P+T TFSTL+DG
Sbjct: 64  -LEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMIARGCAPDTVTFSTLIDG 122

Query: 368 FCLTGRVNHA 377
            C  G    A
Sbjct: 123 LCKFGSEEQA 132


>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
 gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
          Length = 814

 Score =  172 bits (436), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 169/342 (49%), Gaps = 37/342 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP   +++ +   L K +  D   +  +++ + G+
Sbjct: 232 EGDV-----NKACDLFKEMVQ-RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI  +   G+      V   + R    PD V F  L+  LC   +I EA  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARD 345

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC--------- 249
           +F  +   G  P+V +Y+ ++NG    G  +   +LF+ M  G+G   V+C         
Sbjct: 346 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPVICTFNVLIKAY 404

Query: 250 ---------------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KPN +TYTT+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             Y+ LI GFC      +A  L+ E+M+ G+  D+V F+ I++ LCK G++ +A  + +L
Sbjct: 465 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDL 524

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +  G++P    +S LMDG+CL G++  A  +F +M S G +
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 159/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     +A+              ++LF R  S  
Sbjct: 43  LRPEEAHDLLDE-LQRRGTPVLERDLNGFLAAIARAPSSAACRSGPALAVALFNRAASRA 101

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  +TY IL++C  +  R        G++LR+    D +    L+KG C   R
Sbjct: 102 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKR 161

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +YS L+  LC  G +  A +L   MA G    G VC P
Sbjct: 162 TDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSP 217

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y T+IDG  KEG V+KA +LF +M  + I PD VTY+S++H  C A   ++A   L
Sbjct: 218 DVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++GV P+  T+N ++      G+  EA R+ + M  + + P+  TF+ LM   C  
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKY 337

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSY 362



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 146/309 (47%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +    P  LT +  +   L +    D  +  F ++   G+ PD Y Y+ 
Sbjct: 411 DKAMIIFNEMRDHGVKPNVLT-YTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVLFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  + YS L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNDVVYGTLVNGYCKIG 583

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  K I P  + YN +I G   A     A     EM + G+  +  T++
Sbjct: 584 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYS 643

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  +  T +T++ G   T RV  AK+LF S+   
Sbjct: 644 IVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS 703

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 704 GLVPCVVTY 712



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 88/316 (27%), Positives = 149/316 (47%), Gaps = 10/316 (3%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 124 AHRPELALAFFGQLLRTGLRVDIIIANHLLKG-FCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++Y+IL+   C  G+      +L  +    +  +PD VA+ ++I G   E  + +A  LF
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   G  P+ +TYS++++ LC+      A     +M N     GV+  PN  TY  +I
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNK----GVL--PNNWTYNNLI 296

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G    G   +A  +F +M+ ++I PDVVT+N L+   C      EA  +   M  +G  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PDV ++N++++     G + + + L +LM+  G+ P   TF+ L+  +   G ++ A  +
Sbjct: 357 PDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPVICTFNVLIKAYANCGMLDKAMII 416

Query: 381 FVSMESMGCKHTVFSY 396
           F  M   G K  V +Y
Sbjct: 417 FNEMRDHGVKPNVLTY 432



 Score =  110 bits (276), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 66/231 (28%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL P    Y++L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 520 NIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGY 579

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I Y+ +I+GL   G T+ A   F EM       G+
Sbjct: 580 CKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES----GI 635

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               N  TY+ ++ GL K    D+A  LF +++  N+  D++T N++I G        EA
Sbjct: 636 AM--NKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEA 693

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +   G+ P VVT+++++  L K G ++EA  +   M   G  P++
Sbjct: 694 KDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 744



 Score = 98.6 bits (244), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 9/285 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  IFD  +N+   P  +    L+ G CL      +  L +F  + S G+ P+   Y  
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCL--VGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK+GR+  G  +   +L+    P  + +  +I GL    R + A   F ++   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N  TYS ++ GL +      A+ LF+E+   N K  ++      T  T+I G+ +  
Sbjct: 635 IAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMNVKIDII------TLNTMIAGMFQTR 688

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++AK+LF  +    + P VVTY+ +I          EA  +   M + G +PD    N
Sbjct: 689 RVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            ++ EL K  ++  A   L  +  R  +    T   L+D F   G
Sbjct: 749 HVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKG 793



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 121/259 (46%), Gaps = 7/259 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +FD M++    P  +    L+ G   K    D  LSLF+ +   G+ P    YNI
Sbjct: 551 EKALRVFDAMVSAGIEPNDVVYGTLVNG-YCKIGRIDEGLSLFREMLQKGIKPSTILYNI 609

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+   + GR     V    +  S    +   ++ +++GL       EA  LF +L+A  
Sbjct: 610 IIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYSIVLRGLFKNRCFDEAIFLFKELRAMN 669

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K ++IT +T+I G+ +T     A +LF  ++    + G+V  P  VTY+ +I  L KEG
Sbjct: 670 VKIDIITLNTMIAGMFQTRRVEEAKDLFASIS----RSGLV--PCVVTYSIMITNLIKEG 723

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A+++F  M++    PD    N ++      N+   A   L ++ ++    + +T  
Sbjct: 724 LVEEAEDMFSSMQNAGCEPDSRLLNHVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTM 783

Query: 328 VIMDELCKNGKMDEASRLL 346
           +++D     G   E  R L
Sbjct: 784 LLVDLFSSKGTCREHIRFL 802


>gi|255660784|gb|ACU25561.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
          Length = 418

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +          PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN------XLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A +  + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A +   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++      PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNXLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFKYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|410109921|gb|AFV61040.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           filifolia]
          Length = 431

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 149/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM            PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 237 EM------LVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +AN L+ EM  +G+QPD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQANDLIDEMSMKGLQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 390



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKALVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          +P+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQANDLIDEMSMKG------LQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC E+++ +A  LF ++      PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKENKMDDANKLFDEMLVKALVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQANDLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LQPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLKQANDLIDEMSMKGLQPDKITYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
 gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
          Length = 624

 Score =  172 bits (436), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 166/310 (53%), Gaps = 11/310 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  + D M + +   P + ++N++   L + +  D    + + +   G FPD+ TYN 
Sbjct: 97  KDAVKLLDEMRD-KGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNS 155

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   CK  RV      L R+     TPD V++T++I GLC    +  A+ +  ++   G
Sbjct: 156 FIKGLCKCDRVDEARKFLARMP---VTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG 212

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TYS+LI+G C+ G    A+ L + M     K G  C+PN V Y +++  L + G
Sbjct: 213 CTPDVVTYSSLIDGFCKGGEVERAMGLLDSML----KLG--CRPNMVAYNSLLGALHRLG 266

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + KA+++ ++M+ +   PDVV+YN+ I G C A    +A  +   M+++G  P+  +++
Sbjct: 267 HIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYS 326

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS-MES 386
           ++++ELCK  ++D+A  L+E    +    +   ++ L+DG C  GR + A  LF   ++ 
Sbjct: 327 MLVEELCKKKELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACALFSKVLDE 386

Query: 387 MGCKHTVFSY 396
             C+  VF Y
Sbjct: 387 KICEPDVFFY 396



 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 151/318 (47%), Gaps = 26/318 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F +L   L ++   +    L  R+   G  PD   YN LI+ + K       F  
Sbjct: 8   PDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFKF 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++++   P  V +T+++ GLC   R  +A  L  +++  GC PN+ TY+ ++ GLC 
Sbjct: 68  LAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCE 127

Query: 225 TGHTIVALNLFEEMA---------NGNGKFGVVCK-----------------PNTVTYTT 258
                 A  + EEMA           N     +CK                 P+ V+YTT
Sbjct: 128 ERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTT 187

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+GLCK G +D A  +  QM ++   PDVVTY+SLI GFC   +   A  LL  M+  G
Sbjct: 188 VINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLKLG 247

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P++V +N ++  L + G + +A  +L  M  RG  P+  +++  +DG C   RV  AK
Sbjct: 248 CRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACIDGLCKAERVKKAK 307

Query: 379 ELFVSMESMGCKHTVFSY 396
            +F  M   GC     SY
Sbjct: 308 AVFDRMVERGCTPNASSY 325



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 149/290 (51%), Gaps = 10/290 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF     M+     P  +T  N++ G L K       + L   +   G  P++YTYN+
Sbjct: 62  GQAFKFLAEMVKNHCLPTVVTYTNIVDG-LCKAGRTKDAVKLLDEMRDKGCSPNIYTYNV 120

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C+  ++     +L  +    + PD V + S IKGLC   R+ EA     ++    
Sbjct: 121 IVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPV-- 178

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V++Y+T+INGLC++G    A  + ++M N        C P+ VTY+++IDG CK G
Sbjct: 179 -TPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRG------CTPDVVTYSSLIDGFCKGG 231

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A  L   M      P++V YNSL+          +A  +L+EM  +G  PDVV++N
Sbjct: 232 EVERAMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYN 291

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
             +D LCK  ++ +A  + + M+ RG  PN S++S L++  C    ++ A
Sbjct: 292 ACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDA 341



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 151/309 (48%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  + D ML +    P + ++N L G L +  H      +   +   G  PD+ +YN 
Sbjct: 234 ERAMGLLDSMLKL-GCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 292

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+  CK  RV     V  R++    TP+A +++ L++ LC +  + +A  L  + +   
Sbjct: 293 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKKELDDAITLVEQAREKY 352

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              +++ Y+ L++GLC+ G    A  LF ++ +       +C+P+   Y  ++D  CK  
Sbjct: 353 QIVDILLYTVLLDGLCKGGRFDEACALFSKVLDEK-----ICEPDVFFYNVMLDSHCKRR 407

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA ++  QM ++N   +VVT+N L+HG C  +  ++A  +L+ M+D+G  PD VT+ 
Sbjct: 408 QIDKALQIHKQMLERNC-CNVVTWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYG 466

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D +CK GK   A  L E  +  G  P+  T+S L+ G         A  LF  ++  
Sbjct: 467 TLVDAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLDVA 526

Query: 388 GCKHTVFSY 396
                +  Y
Sbjct: 527 LWNAMILGY 535



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 115/250 (46%), Gaps = 61/250 (24%)

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGK---FGVV- 248
           C+P+  T++ L+ GLCR+     A  L   M                +G  K   FG   
Sbjct: 6   CQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAF 65

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                     C P  VTYT I+DGLCK G    A +L  +M+DK  +P++ TYN ++ G 
Sbjct: 66  KFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFN------------------------------- 327
           C     +EA  +L EM  +G  PDVVT+N                               
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSY 185

Query: 328 -VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             +++ LCK+G +D ASR+L+ M  RG  P+  T+S+L+DGFC  G V  A  L  SM  
Sbjct: 186 TTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERAMGLLDSMLK 245

Query: 387 MGCKHTVFSY 396
           +GC+  + +Y
Sbjct: 246 LGCRPNMVAY 255



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 137/315 (43%), Gaps = 52/315 (16%)

Query: 64  ASLEQFLKERCKSSGQGDITAITPN--EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           +S    ++E CK     D   +     E + I D +L           + +L   L K  
Sbjct: 323 SSYSMLVEELCKKKELDDAITLVEQAREKYQIVDILL-----------YTVLLDGLCKGG 371

Query: 122 HYDTVLSLF-KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVA 179
            +D   +LF K L+     PD++ YN++++  CK  ++     +  ++L R+C   + V 
Sbjct: 372 RFDEACALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCC--NVVT 429

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +  L+ GLC + R+ +A  +   +   G  P+ +TY TL++ +C+ G +  AL LFEE  
Sbjct: 430 WNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAV 489

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK-------------------------- 273
            G       C P+ VTY+ +I GL  E   ++A                           
Sbjct: 490 KGG------CVPDVVTYSALITGLVHENMAEEAYLLFTKLDVALWNAMILGYAENGSGDL 543

Query: 274 --ELFLQMKDKNINPDVVTYNSLIHG-FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
             +LF+++ + ++ P+  T+   I G    A    +A  L    +  G  PD+   N ++
Sbjct: 544 GLKLFVELIESDVEPNARTFGKEISGKLVKAESLGKARGLFDRAVKGGFFPDLFVANTLI 603

Query: 331 DELCKNGKMDEASRL 345
           D   K G ++EA R+
Sbjct: 604 DVFAKCGDLEEARRI 618



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/118 (29%), Positives = 55/118 (46%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M DK+  PD  T+  L+ G C +N   +A  LL  M + G  PD   +N ++    K   
Sbjct: 1   MIDKSCQPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKD 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +A + L  M+     P   T++ ++DG C  GR   A +L   M   GC   +++Y
Sbjct: 61  FGQAFKFLAEMVKNHCLPTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTY 118


>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
 gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
          Length = 577

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 162/309 (52%), Gaps = 17/309 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF + D M         L    L+ G L +    D  L  FK +      P++ TYN 
Sbjct: 16  DQAFELLDEMKERGVKMDVLLHSTLIQG-LCRKGRIDEALEQFKSMGEE-CSPNVITYNT 73

Query: 148 LINCFCKMGRVSHGFVVLGRILR------SCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           ++N  CK  R+  G  +   + +       C  PD ++++++I  LC   R+ +A   F 
Sbjct: 74  VVNGLCKANRIDEGLELFDDMEKRYEASHGC-EPDVISYSTVIDALCKAQRVDKAYEYFK 132

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           +++A GC PNV+TYS+LI+GLC+      A +L  ++       G    P  + Y  +++
Sbjct: 133 RMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLK------GEDMVPRAMYYNAVVN 186

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-MMDQGVQ 320
           G  ++G   +  EL L MK+K    +++ +N+++H   + ND  E  C   E ++  G +
Sbjct: 187 GFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHAL-WKNDEQEKACQFFERLLKSGKK 245

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+VVT+NV +  LCK GK+DEA R+L  M+   V P+  T+S+++DGFC  GR++ A ++
Sbjct: 246 PNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDV 305

Query: 381 FVSMESMGC 389
           F  M    C
Sbjct: 306 FTRMMVHEC 314



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 142/290 (48%), Gaps = 43/290 (14%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           Y  +IN FCK G+V   F +L  +       D +  ++LI+GLC + RI EA     + K
Sbjct: 2   YTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEA---LEQFK 58

Query: 205 AFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG-NGKFGVVCKPNTVTYTTIID 261
           + G  C PNVITY+T++NGLC+       L LF++M        G  C+P+ ++Y+T+ID
Sbjct: 59  SMGEECSPNVITYNTVVNGLCKANRIDEGLELFDDMEKRYEASHG--CEPDVISYSTVID 116

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------- 313
            LCK   VDKA E F +M+     P+VVTY+SLI G C  +  +EA  LL++        
Sbjct: 117 ALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVP 176

Query: 314 ---------------------------MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
                                      M ++G   +++ FN ++  L KN + ++A +  
Sbjct: 177 RAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFF 236

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E ++  G  PN  T++  + G C  G+V+ A  + + M        V +Y
Sbjct: 237 ERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITY 286



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 149/302 (49%), Gaps = 10/302 (3%)

Query: 88  NEAFCIFDYMLNMRPS----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           +E   +FD M     +     P + S++ +   L K +  D     FKR+ + G  P++ 
Sbjct: 85  DEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVV 144

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY+ LI+  CK+ RV   + +L ++      P A+ + +++ G   + +  E   L   +
Sbjct: 145 TYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHM 204

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           K  G   N+I ++ +++ L +      A   FE +   +GK     KPN VTY   + GL
Sbjct: 205 KEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLK-SGK-----KPNVVTYNVAVHGL 258

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G VD+A  + L+M +  + PDV+TY+S+I GFC A   ++A+ +   MM     P  
Sbjct: 259 CKAGKVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTRMMVHECIPHP 318

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VTF  ++    ++ K  EA R+ E M+  G  P   T++ LMD  C    V  A E++  
Sbjct: 319 VTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCVCGADSVESALEIYHK 378

Query: 384 ME 385
           M+
Sbjct: 379 MK 380



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 142/295 (48%), Gaps = 8/295 (2%)

Query: 94  FDYMLNMRP--SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           ++Y   MR     P + +++ L   L K    D   SL  +L    + P    YN ++N 
Sbjct: 128 YEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNG 187

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           F + G+ S    +L  +    F  + + F +++  L       +A   F +L   G KPN
Sbjct: 188 FKRQGKPSECLELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPN 247

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+TY+  ++GLC+ G    A  +  EM            P+ +TY++IIDG CK G +DK
Sbjct: 248 VVTYNVAVHGLCKAGKVDEAYRILLEMVESK------VTPDVITYSSIIDGFCKAGRMDK 301

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A ++F +M      P  VT+ +L+HGF       EA  +  +M++ G  P + T+NV+MD
Sbjct: 302 ADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMD 361

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +C    ++ A  +   M  +   P+ +T++ L+   C   RV+ AKE    ME+
Sbjct: 362 CVCGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEA 416



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 141/309 (45%), Gaps = 22/309 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            E  C F   L      P + ++N+    L K    D    +   +  + + PD+ TY+ 
Sbjct: 229 QEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYSS 288

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK GR+     V  R++     P  V F +L+ G     +  EA  +   +   G
Sbjct: 289 IIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMVNAG 348

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P + TY+ L++ +C       AL ++ +M           +P+  TY  +I  LC+  
Sbjct: 349 FIPGLQTYNVLMDCVCGADSVESALEIYHKMKRKKR------QPDANTYAPLIQCLCRAR 402

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+AKE    M+  N+ P+    ++L+   C   + +EA C +++             N
Sbjct: 403 RVDEAKEFLDVMEADNVVPNGAICHALVEVLCKQGEVDEA-CSVLD-------------N 448

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V+  E+CK G+ DEA  ++E M+L+GV P+ +T+  ++   C   RV+ A   F  M S 
Sbjct: 449 VV--EICKAGEPDEAVEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASR 506

Query: 388 GCKHTVFSY 396
           GC   + +Y
Sbjct: 507 GCAPGLVTY 515



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 115/272 (42%), Gaps = 23/272 (8%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M+     P P+T   LL G  ++ K       + + + + G  P L TYN+L++C 
Sbjct: 305 VFTRMMVHECIPHPVTFMTLLHG-FSEHKKSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C    V     +  ++ R    PDA  +  LI+ LC   R+ EA      ++A    PN 
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
                L+  LC+ G    A ++ + +                        +CK G  D+A
Sbjct: 424 AICHALVEVLCKQGEVDEACSVLDNVVE----------------------ICKAGEPDEA 461

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            E+  QM  K + PD  TY +++   C  +  + A     +M  +G  P +VT+ +++ E
Sbjct: 462 VEVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGE 521

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            C     D+A R+ E M+  G  P   T  TL
Sbjct: 522 ACSADMADDAFRIFEAMVAAGFTPQAQTMRTL 553


>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 554

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 161/340 (47%), Gaps = 38/340 (11%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D ML  R   P + ++ +L     K   Y   + L   +   G  PD+ TYN+++
Sbjct: 177 ALAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 235

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   GC 
Sbjct: 236 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 295

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--------------------- 248
           PNV+T++ LI+ LCR G    AL + E++     K+G                       
Sbjct: 296 PNVVTFNMLISFLCRKGLVEPALEVLEQIP----KYGCTPNSLSYNPLLHAFCKQKKMDK 351

Query: 249 ------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                       C P+ V+Y T++  LC+ G VD A EL  Q+KDK   P +++YN++I 
Sbjct: 352 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 411

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A    EA  LL EM+ +G+QPD++T++ I   LC+  ++++A R    +   G+ P
Sbjct: 412 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP 471

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           NT  ++ ++ G C     + A +LF  M   GC     +Y
Sbjct: 472 NTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 511



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 150/284 (52%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L   +   G  P++ T+N+LI+  C+ G V     V
Sbjct: 261 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 320

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   TP+++++  L+   C + ++ +A A    + + GC P++++Y+TL+  LCR
Sbjct: 321 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 380

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G   VA+ L  ++ +        C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 381 SGEVDVAVELLHQLKDKG------CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 434

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C  +   +A     ++ D G++P+ V +N I+  LCK  +   A  
Sbjct: 435 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAID 494

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   MI  G  PN ST++ L++G    G +  A++L   + S G
Sbjct: 495 LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 538



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 146/295 (49%), Gaps = 6/295 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N L   L         L++   +      PD+ TY IL+   CK       
Sbjct: 153 PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 212

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  +     TPD V +  ++ G+C E R+ +A      L ++GC+PN ++Y+ ++ G
Sbjct: 213 MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 272

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC       A  L  EM    G+ G  C PN VT+  +I  LC++G V+ A E+  Q+  
Sbjct: 273 LCTAERWEDAEELMGEM----GQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 326

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+ ++YN L+H FC     ++A   L  M+ +G  PD+V++N ++  LC++G++D 
Sbjct: 327 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 386

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  LL  +  +G  P   +++T++DG    G+   A EL   M S G +  + +Y
Sbjct: 387 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 441



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 152/325 (46%), Gaps = 55/325 (16%)

Query: 118 AKTKHYDTVLSLFKRLNSTGLF-----------PDLYTYNILINCFCKMGRVSHGFVVLG 166
           A+     T  +L K+L+++G             PD+  YN ++  +C  G++     ++ 
Sbjct: 91  ARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMVAGYCGAGQLDAARRLVA 150

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      PDA  + +LI+GLC   R   A A+  ++    C P+V+TY+ L+   C+  
Sbjct: 151 EMP---VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRS 207

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ L +EM +        C P+ VTY  +++G+C+EG VD A E    +      P
Sbjct: 208 GYKQAMKLLDEMRDKG------CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEP 261

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG--------- 337
           + V+YN ++ G C A  W +A  L+ EM  +G  P+VVTFN+++  LC+ G         
Sbjct: 262 NTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVL 321

Query: 338 --------------------------KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
                                     KMD+A   L+LM+ RG  P+  +++TL+   C +
Sbjct: 322 EQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRS 381

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G V+ A EL   ++  GC   + SY
Sbjct: 382 GEVDVAVELLHQLKDKGCAPVLISY 406



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  +  PP + +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  +
Sbjct: 289 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 348

Query: 158 VSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +      L  ++ R C+ PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+
Sbjct: 349 MDKAMAFLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYN 407

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I+GL + G T  AL L  EM +         +P+ +TY+TI  GLC+E  ++ A   F
Sbjct: 408 TVIDGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAIRAF 461

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +++D  I P+ V YN++I G C   + + A  L   M+  G  P+  T+ ++++ L   
Sbjct: 462 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 521

Query: 337 GKMDEASRLLELMILRGV 354
           G + EA  LL+ +  RGV
Sbjct: 522 GLIKEARDLLDELCSRGV 539



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 115/230 (50%), Gaps = 14/230 (6%)

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R++ S   PDA    +LIK L A  R  EA  +        C P+V+ Y+ ++ G C  G
Sbjct: 86  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMVAGYCGAG 140

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L  EM           +P+  TY T+I GLC  G    A  +  +M  +   P
Sbjct: 141 QLDAARRLVAEMP---------VEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVP 191

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTY  L+   C  + + +A  LL EM D+G  PD+VT+NV+++ +C+ G++D+A   L
Sbjct: 192 DVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFL 251

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +   G  PNT +++ ++ G C   R   A+EL   M   GC   V ++
Sbjct: 252 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 301



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 63/143 (44%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + L  +   P L S+N +   L K       L L   + S GL PD+ TY+ +    C+ 
Sbjct: 392 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 451

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
            R+       G++      P+ V + ++I GLC       A  LF  +   GC PN  TY
Sbjct: 452 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 511

Query: 216 STLINGLCRTGHTIVALNLFEEM 238
           + LI GL   G    A +L +E+
Sbjct: 512 TILIEGLAYEGLIKEARDLLDEL 534


>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
 gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
          Length = 855

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/321 (31%), Positives = 156/321 (48%), Gaps = 35/321 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L    ++    D  L LFK L+S G  P+  TY  +I       R+      
Sbjct: 297 PDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATYTTIIQGLYDAQRMEEAKAF 356

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               L      D +++T++IKGL    RI EA  LF KLK  GC PNV+ Y+ +I+GL +
Sbjct: 357 FDEAL------DVISYTTVIKGLADSKRIDEACELFEKLKTAGCSPNVVAYTAVIDGLLK 410

Query: 225 TGHTIVALNLFEEMANGN-----GKFGVV------------------------CKPNTVT 255
            G     L  FE+M+  +       + VV                        C P+T+T
Sbjct: 411 AGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTIT 470

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YTT+IDG  K   +D+A++L   M  K   P  VTY S++HGFC  +  NEA  ++ +M 
Sbjct: 471 YTTLIDGFSKASKMDEARKLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMR 530

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           ++G +P +  F  ++      G+ +EA ++L  M  RG  P+   +++L+D    TGRV 
Sbjct: 531 ERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVP 590

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A+ +F SM   GC     +Y
Sbjct: 591 EARHVFDSMIEKGCAPDALTY 611



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/289 (30%), Positives = 142/289 (49%), Gaps = 12/289 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L     K    D  L L  ++     FPD+ TYNIL+  F +  R+     +   
Sbjct: 265 VAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKL 324

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+A  +T++I+GL    R+ EA A F +        +VI+Y+T+I GL  +  
Sbjct: 325 LSSYGCKPNAATYTTIIQGLYDAQRMEEAKAFFDE------ALDVISYTTVIKGLADSKR 378

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  LFE++          C PN V YT +IDGL K G ++   + F  M   +  P 
Sbjct: 379 IDEACELFEKLKTAG------CSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPT 432

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
             TY  +I G C A    +A  +  +M+ +G  PD +T+  ++D   K  KMDEA +LL+
Sbjct: 433 RTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLD 492

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +M+ +G  P   T+ +++ GFC    +N AKE+   M   GC+  +F +
Sbjct: 493 VMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 541



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +   LA     D     F  +   G  PD+  +  LI+ FCK G+   G ++
Sbjct: 53  PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHML 112

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L + L+  F PD   +TS+I G C    +     +  ++ A GC P+   Y  LI+ LC+
Sbjct: 113 LNQALKR-FRPDVFLYTSVIHGYCKAGDLDTGFKILEEMLAAGCIPDAAAYFVLIDPLCK 171

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LFE M          C  + VT+ T+I+ L   G +D+A EL+ +M ++  
Sbjct: 172 LGRVDEAYELFERMRKSG------CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGY 225

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +   +SLI   C A   +EAN +   ++ + V    V +N +MD  CK G++D+  +
Sbjct: 226 EPYLEVQDSLIFALCKAGKVDEANEIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLK 285

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M+     P+  T++ L+ GF    R++ A ELF  + S GCK    +Y
Sbjct: 286 LLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSSYGCKPNAATY 337



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/318 (28%), Positives = 148/318 (46%), Gaps = 13/318 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A    EA   FD  L+       + S+  +   LA +K  D    LF++L + G 
Sbjct: 342 QGLYDAQRMEEAKAFFDEALD-------VISYTTVIKGLADSKRIDEACELFEKLKTAGC 394

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P++  Y  +I+   K GR+  G      +  S   P    +T +I GLC    + +A  
Sbjct: 395 SPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVIDGLCKAQMLPDACK 454

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F ++   GC P+ ITY+TLI+G  +      A  L + M     +      P  VTY +
Sbjct: 455 VFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGPE------PTAVTYGS 508

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I+ G CK   +++AKE+  QM+++   P +  + SL+  +       EA  +L EM  +G
Sbjct: 509 IVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQVLTEMTARG 568

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PDV+ +  ++D L   G++ EA  + + MI +G  P+  T+ T++  F   G V  A 
Sbjct: 569 CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGTIIQNFSKIGNVEAAG 628

Query: 379 ELFVSMESMGCKHTVFSY 396
           E+   M   G     F+Y
Sbjct: 629 EILELMAKSGVGPDCFAY 646



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 83/281 (29%), Positives = 144/281 (51%), Gaps = 9/281 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N++   L K +  D  + LF  + S G  P + +YN +I+    + ++   +  
Sbjct: 18  PDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTVISGLASIDKMDEAYKF 77

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLC 223
              ++ +   PD +AFT+LI G C   +      L  + LK F  +P+V  Y+++I+G C
Sbjct: 78  FNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRF--RPDVFLYTSVIHGYC 135

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G       + EEM          C P+   Y  +ID LCK G VD+A ELF +M+   
Sbjct: 136 KAGDLDTGFKILEEM------LAAGCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSG 189

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              D VT+ +LI         +EA  L  EM+++G +P +   + ++  LCK GK+DEA+
Sbjct: 190 CLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEAN 249

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            + + ++ + V  +   +++LMDG+C  GRV+   +L + M
Sbjct: 250 EIYQTVVAKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQM 290



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 158/339 (46%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D ML   P P  +T  +++ G   K    +    +  ++   G  P L+ +  
Sbjct: 485 DEARKLLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTS 543

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +   GR    + VL  +      PD + +TSLI  L +  R+ EA  +F  +   G
Sbjct: 544 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------------NGKF 245
           C P+ +TY T+I    + G+   A  + E MA                        +  F
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 246 GVV-------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPDVVTYNSLIHG 297
           GV         KPN VT+  ++ GL K+G  D+A  LF +M +K+ + P +V+Y  LI G
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDG 723

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
              A   +EA     EM+D+G+ P+  T+  ++  L K G++ EA +L+E M+  GVNP+
Sbjct: 724 LGKAGRVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 783

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +S L+ G   +  V+ A ++F  M   GC     +Y
Sbjct: 784 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTY 822



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 6/286 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA+ +   M   R   P +  +  L   L  T        +F  +   G  PD  TY  
Sbjct: 555 EEAYQVLTEM-TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 613

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  F K+G V     +L  + +S   PD  A+ SL+ G     R+ +A  ++ ++ A G
Sbjct: 614 IIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG 673

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN +T++ L++GL + G T  A +LF+EM   +        P  V+YT +IDGL K G
Sbjct: 674 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKDE-----VPPTLVSYTILIDGLGKAG 728

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A   F +M D+ I P+  TY SLI+    A    EA  L+ +M+  GV PDV  ++
Sbjct: 729 RVSEAFSQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 788

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
            ++  L  +  +D A  + + M+ RG  PN  T+  L  GF   GR
Sbjct: 789 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 834



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 135/281 (48%), Gaps = 8/281 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++ ++   L K +       +F+++   G  PD  TY  LI+ F K  ++     +
Sbjct: 431 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 490

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P AV + S++ G C    I EA  +  +++  GC+P +  +++L++    
Sbjct: 491 LDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLS 550

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G    A  +  EM A G       C P+ + YT++ID L   G V +A+ +F  M +K 
Sbjct: 551 KGRAEEAYQVLTEMTARG-------CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 603

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD +TY ++I  F    +   A  +L  M   GV PD   +N +MD   K  ++D+A 
Sbjct: 604 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 663

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            + + M+  G+ PN  TF+ LM G    G+ + A  LF  M
Sbjct: 664 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEM 704



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 66/142 (46%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F  ML     PP L S+ +L   L K        S F+ +   G+ P+ +TY  
Sbjct: 695 DRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGIIPECHTYTS 754

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI    K GR+     ++  +++    PD  A+++LI GL   S +  A  +F ++   G
Sbjct: 755 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 814

Query: 208 CKPNVITYSTLINGLCRTGHTI 229
           C PN +TY  L  G    G  +
Sbjct: 815 CAPNEVTYKVLRRGFRAAGRAL 836



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 60/110 (54%), Gaps = 2/110 (1%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A +   +M    + PDVV  N +++G C A   ++A  L +EM   G +P +V++N 
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNT 60

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG--RVNH 376
           ++  L    KMDEA +    MI  G  P+   F+TL+ GFC  G  +V H
Sbjct: 61  VISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGH 110



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%)

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA   L EM   G+ PDVV  N++++ LCK  K+D+A  L   M   G  P   +++T+
Sbjct: 2   EEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSYNTV 61

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + G     +++ A + F SM   GC+  V ++
Sbjct: 62  ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAF 93



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 35/58 (60%)

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+EA   L+ M   G+ P+    + +++G C   +++ A ELF+ M SMGC+ T+ SY
Sbjct: 1   MEEALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDKAIELFLEMPSMGCEPTIVSY 58


>gi|255660828|gb|ACU25583.1| pentatricopeptide repeat-containing protein [Lantana canescens]
          Length = 418

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 285 GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L  G C  GR   A+++   M S+G K    +Y
Sbjct: 345 DEVAYTALXSGLCQEGRSVDAEKMLREMLSVGLKPDARTY 384



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  +   LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDG 411



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 96/283 (33%), Positives = 149/283 (52%), Gaps = 16/283 (5%)

Query: 80  GDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           GDI       A  +FD +    +RPS   + S+N L     +    D    L   + ++G
Sbjct: 150 GDIRV-----AQSVFDAITKWGLRPS---VVSYNTLMNGYIRLGDLDEGFRLKSAMLASG 201

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A 
Sbjct: 202 VQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 261

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            ++ ++ +    P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYT
Sbjct: 262 EIYKQMLSQSLSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG------LKPDKITYT 315

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDG CKEG +D A E   +M  +NI  D V Y +L  G C      +A  +L EM+  
Sbjct: 316 TLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALXSGLCQEGRSVDAEKMLREMLSV 375

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           G++PD  T+ +I++E CK G + + S+LL+ M   G  P+  T
Sbjct: 376 GLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVT 418


>gi|115459104|ref|NP_001053152.1| Os04g0488500 [Oryza sativa Japonica Group]
 gi|113564723|dbj|BAF15066.1| Os04g0488500 [Oryza sativa Japonica Group]
          Length = 801

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 152/302 (50%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   G+ PD+YTY ILI+ FCK G +     +
Sbjct: 286 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 345

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     +P  V +T+LI       ++ +A  +F ++   GC+PN +TY  L++GLC+
Sbjct: 346 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 405

Query: 225 TGHTIVALNLFEEMA----NGNGKFGVVCK------PNTVTYTTIIDGLCKEGFVDKAKE 274
            G+   A  ++ ++     + +  F   C+      PN VTY  ++DGLCK   VD A E
Sbjct: 406 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 465

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y++LI GFC A   + A  + ++M   G  P V T+  ++D + 
Sbjct: 466 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 525

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+G++D A ++L  M+     PN  T++ ++DG C  G    A +L   ME  GC   V 
Sbjct: 526 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 585

Query: 395 SY 396
           +Y
Sbjct: 586 TY 587



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 160/329 (48%), Gaps = 23/329 (6%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A    +AF +F  M  M    P + ++ +L     K    +    LF+ + S G  P + 
Sbjct: 301 ATKVEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 359

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY  LI+ + K  +V     +  R++ +   P+ V + +L+ GLC    I +A  ++ KL
Sbjct: 360 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 419

Query: 204 KA----------FGCK------PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
                       F C+      PNV+TY  L++GLC+      A  L + M +       
Sbjct: 420 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG----- 474

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C+PN + Y  +IDG CK G +D A+E+FLQM      P V TY SLI         + A
Sbjct: 475 -CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 533

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L +M+     P+VVT+  ++D LC+ G+ ++A +LL LM  +G +PN  T++ L+DG
Sbjct: 534 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 593

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               G+++ + +LF  M   GC     +Y
Sbjct: 594 LGKAGKIDLSLDLFTQMSRKGCSPNYVTY 622



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 262 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 321

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   +T LI   C    I +A  LF ++++ GC P V+TY+ LI+   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 381

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---------------K 280
             M +        C+PN VTY  ++DGLCK G + KA E++ ++               +
Sbjct: 382 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 435

Query: 281 DKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           D++ + P+VVTY +L+ G C A+  + A+ LL  M+  G +P+ + ++ ++D  CK GK+
Sbjct: 436 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 495

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D A  +   M   G  P+  T+++L+D     GR++ A ++   M    C   V +Y
Sbjct: 496 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTY 552



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 156/315 (49%), Gaps = 23/315 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+ M ++  SP  +T   L+   L K K       +F R+   G  P+  TY  
Sbjct: 340 EQAQWLFEEMRSVGCSPTVVTYTALIHAYL-KAKQVPQANDIFHRMVDAGCRPNDVTYGA 398

Query: 148 LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDAVAFTSLIKGLCAES 191
           L++  CK G +S  F V  +++                R    P+ V + +L+ GLC   
Sbjct: 399 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 458

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++  A  L   + + GC+PN I Y  LI+G C+ G    A  +F +M     K G +  P
Sbjct: 459 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--P 512

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  TYT++ID + K+G +D A ++  QM   +  P+VVTY ++I G C   +  +A  LL
Sbjct: 513 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 572

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M ++G  P+VVT+  ++D L K GK+D +  L   M  +G +PN  T+  L++  C  
Sbjct: 573 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 632

Query: 372 GRVNHAKELFVSMES 386
           G ++ A+ L   M+ 
Sbjct: 633 GLLDKARLLLGEMKQ 647



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 42/328 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  + D ML+    P  +  ++ L     K    D+   +F ++   G  P ++TY  
Sbjct: 461 DHAHELLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 519

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K GR+     VL ++L+   TP+ V +T++I GLC      +A  L + ++  G
Sbjct: 520 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 579

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+ LI+GL + G   ++L+LF +M+         C PN VTY  +I+ LC  G
Sbjct: 580 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAG 633

Query: 268 FVDKAKELFLQMKDK---------------------------------NINPDVVTYNSL 294
            +DKA+ L  +MK                                      P    Y  L
Sbjct: 634 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGML 693

Query: 295 IHGFCYANDWNEANCLLIEMMD--QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           I  F  A     A  L  EMM+    V+ D   +  ++  LC   +++EA RL   M  R
Sbjct: 694 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 753

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           G  P  S F  L+ G     + + A +L
Sbjct: 754 GFVPELSVFVCLIKGLVEVKKWDEALQL 781



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 12/286 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 117 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI------V 230
              F SL+   C E     A  L  ++   GC P  + Y+  I  +C            +
Sbjct: 177 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 236

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  ++ EM   N      C  N V        LC  G  DKA +L  +M  K   PD  T
Sbjct: 237 AEKIYGEMLAAN------CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTST 290

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y+ +I   C+A    +A  L  EM   GV PDV T+ +++D  CK G +++A  L E M 
Sbjct: 291 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 350

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +P   T++ L+  +    +V  A ++F  M   GC+    +Y
Sbjct: 351 SVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 396



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 141/327 (43%), Gaps = 38/327 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L+     D    + K ++ +G   D +T     +  CK GR +     
Sbjct: 38  PSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGCFAHALCKEGRWADA--- 94

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I R  F  D V  T +I GL   S   EA +   +++   C PNV+TY TL++G  +
Sbjct: 95  LDMIEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLK 154

Query: 225 TGH-----TIVAL----------NLFEEMANG--------------NGKFGVVCKPNTVT 255
                    I+ +          +LF  + +               N      C P  V 
Sbjct: 155 KKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVV 214

Query: 256 YTTIIDGLCKE------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           Y   I  +C +        +D A++++ +M   N   + V   +     C    +++A  
Sbjct: 215 YNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQ 274

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L+ EMM +G  PD  T++ ++  LC   K+++A  L + M + GV P+  T++ L+D FC
Sbjct: 275 LIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFC 334

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  A+ LF  M S+GC  TV +Y
Sbjct: 335 KAGLIEQAQWLFEEMRSVGCSPTVVTY 361



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 41/286 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K    D  + +  ++      P++ TY  +I+  C++G       +
Sbjct: 512 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL 571

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     +P+ V +T+LI GL    +I  +  LFT++   GC PN +TY  LIN LC 
Sbjct: 572 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 631

Query: 225 TG---------------------------------HTIVALNLFEEMANGNGKFGVVCKP 251
            G                                   I +L + EEM +    +G V  P
Sbjct: 632 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMES----YGTV--P 685

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKD--KNINPDVVTYNSLIHGFCYANDWNEANC 309
               Y  +ID   K G ++ A EL  +M +   ++  D   Y SLI   C A+   EA  
Sbjct: 686 IAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 745

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           L  EM  +G  P++  F  ++  L +  K DEA +L   +   GVN
Sbjct: 746 LYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVN 791



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 87/190 (45%), Gaps = 15/190 (7%)

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---GKFGVVCKPNTVTYTTI 259
           LK FG +P+ +TY+ L+  L   G   +   + +EM+       +F V C          
Sbjct: 31  LKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMSESGFCMDRFTVGC---------F 81

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
              LCKEG    A ++   ++ ++   D V    +I G   A+ ++EA   L  M     
Sbjct: 82  AHALCKEGRWADALDM---IEREDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSC 138

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVT+  ++    K  ++    R++ +M+  G NPN S F++L+  +C      +A +
Sbjct: 139 IPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYK 198

Query: 380 LFVSMESMGC 389
           L   M + GC
Sbjct: 199 LLNRMTTCGC 208


>gi|410109879|gb|AFV61019.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           macrostachya]
          Length = 414

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           + K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 100 MMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPS 159

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 160 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 219

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 220 EMLDK----GLV--PNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 273

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 274 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL 333

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S G K    +Y
Sbjct: 334 DDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTY 373



 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 146/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     +    D    L   ++++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 158 PSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANEL 217

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 218 FDEMLDKGLVPNGVTFTTLIDGHCKSGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 278 KGDLKQAHDLIDEMSMKG------LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENI 331

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C    + +A  +L EM+  G++PD  T+ +I++E CK G +   S+
Sbjct: 332 RLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSK 391

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGDIRVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 181

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           ++G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 242 KSGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 295

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAE 355

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 356 KVLREMLSAGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTY 408



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 249 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLI 307

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 308 DGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAEKVLREMLSAGLK 367

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 368 PDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|326493766|dbj|BAJ85345.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 671

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 159/292 (54%), Gaps = 15/292 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F++L  CL +    D  + + ++++  G  PD   YN LI  F + GRV     +
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +   C +PD ++F + +KGLC   R  +A  L  ++    C    +T++ LI+ LC+
Sbjct: 407 LNSM--PC-SPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQ 463

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ +FE+M     K+G  C P+ VTY+++I+GL ++G V+ A ELF  M  K  
Sbjct: 464 NGRVNNAIEVFEQMP----KYG--CTPDIVTYSSLINGLSEQGLVESAIELFQSMPCK-- 515

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+  YN+++ G C A  W +A  L+  M  +   P+ +TFN++++ LC+ G +D A  
Sbjct: 516 -PDIFGYNAVLKGLCRAARWEDAGELISNMARKDCPPNEITFNILINSLCQKGLVDRAIE 574

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + E M   G  P+  T++ L++GF   GR++ A+ L   + +M CK    SY
Sbjct: 575 VFEQMPKYGSTPDIFTYNALINGFSEQGRLDDARRL---LSTMSCKPDAVSY 623



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 151/293 (51%), Gaps = 15/293 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +F        +    D  + L  R+   G  PD+  Y+ L+N F + GRV     
Sbjct: 244 PPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPDVVIYSTLVNGFSEQGRVDDAIE 303

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +L     P+ + + + +KGLC   R  +   L  ++    C PN  T+S L + LC
Sbjct: 304 LLNGML---CKPNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCLPNEATFSMLTSCLC 360

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ + E+M     K+G  C+P+ V Y T+I    ++G VD A +L   M    
Sbjct: 361 QNGLVDCAMEVLEQMH----KYG--CRPDAVIYNTLIYSFSEQGRVDDALKLLNSMP--- 411

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +PDV+++N+ + G C A  W++A  L+++M+ +      +TFN+++D LC+NG+++ A 
Sbjct: 412 CSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNGRVNNAI 471

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + E M   G  P+  T+S+L++G    G V  A ELF   +SM CK  +F Y
Sbjct: 472 EVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELF---QSMPCKPDIFGY 521



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/265 (32%), Positives = 134/265 (50%), Gaps = 12/265 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +LN  P  P + SFN     L + + +D    L  ++          T+NILI+  C+ G
Sbjct: 406 LLNSMPCSPDVISFNAALKGLCRAERWDDAEELIVQMLREDCPLIEMTFNILIDSLCQNG 465

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           RV++   V  ++ +   TPD V ++SLI GL  +  +  A  LF   ++  CKP++  Y+
Sbjct: 466 RVNNAIEVFEQMPKYGCTPDIVTYSSLINGLSEQGLVESAIELF---QSMPCKPDIFGYN 522

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            ++ GLCR      A  L   MA  +      C PN +T+  +I+ LC++G VD+A E+F
Sbjct: 523 AVLKGLCRAARWEDAGELISNMARKD------CPPNEITFNILINSLCQKGLVDRAIEVF 576

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            QM      PD+ TYN+LI+GF      ++A  LL  M     +PD V++N  +  LC+ 
Sbjct: 577 EQMPKYGSTPDIFTYNALINGFSEQGRLDDARRLLSTM---SCKPDAVSYNSALKGLCRA 633

Query: 337 GKMDEASRLLELMILRGVNPNTSTF 361
            +  EA  ++  M+     PN  TF
Sbjct: 634 ERWKEAEEVVAEMLRMKCPPNEVTF 658



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 135/256 (52%), Gaps = 15/256 (5%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++ TY  LIN +C+ GR++    ++  +      PD   + +++ GLC   +  +A AL 
Sbjct: 179 NVVTYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMGLCGARQWEDAEALM 235

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++    C PN +T++T I   C+ G    A+ L + M     ++G  C P+ V Y+T++
Sbjct: 236 AEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMP----QYG--CTPDVVIYSTLV 289

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +G  ++G VD A EL   M  K   P+ + YN+ + G C A  W +   L++EM+ +   
Sbjct: 290 NGFSEQGRVDDAIELLNGMLCK---PNTICYNAALKGLCIAQRWEDVGQLIVEMVRKDCL 346

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+  TF+++   LC+NG +D A  +LE M   G  P+   ++TL+  F   GRV+ A +L
Sbjct: 347 PNEATFSMLTSCLCQNGLVDCAMEVLEQMHKYGCRPDAVIYNTLIYSFSEQGRVDDALKL 406

Query: 381 FVSMESMGCKHTVFSY 396
              + SM C   V S+
Sbjct: 407 ---LNSMPCSPDVISF 419



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 76/219 (34%), Positives = 111/219 (50%), Gaps = 14/219 (6%)

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           VA   LIK LCA+ R+ +A  +   LKA G   + ++++TL+ G CR G          +
Sbjct: 113 VACNILIKKLCAQRRLADAERVLDALKAAGAA-DPVSHNTLVAGYCRDGR-------LAD 164

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                   G+    N VTYTT+I+G C+ G +  A  L   M    + PD  TYN+++ G
Sbjct: 165 AERLLAAAGLSGAANVVTYTTLINGYCRSGRLADALALIASMP---VAPDTYTYNTVLMG 221

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C A  W +A  L+ EM+     P+ VTF   +   C+NG +D A +LL+ M   G  P+
Sbjct: 222 LCGARQWEDAEALMAEMVRNHCPPNEVTFATQIRAFCQNGLLDRAVQLLDRMPQYGCTPD 281

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +STL++GF   GRV+ A EL   +  M CK     Y
Sbjct: 282 VVIYSTLVNGFSEQGRVDDAIEL---LNGMLCKPNTICY 317


>gi|356548144|ref|XP_003542463.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 756

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN L   L +T H    L +   +   G   D+YTYN LI+  CK+G +     +
Sbjct: 300 PDQVTFNALVNGLCRTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEI 359

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+ V + +LI  LC E+ +  A  L   L + G  P+V T+++LI GLC 
Sbjct: 360 LHHMVSRDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCL 419

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           T +  +A+ LFEEM          C P+  TY+ +I+ LC E  + +A  L  +M+    
Sbjct: 420 TSNREIAMELFEEMKEKG------CDPDEFTYSILIESLCSERRLKEALMLLKEMELSGC 473

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +VV YN+LI G C  N   +A  +  +M   GV    VT+N +++ LCK+ +++EA++
Sbjct: 474 ARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQ 533

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ MI+ G+ P+  T++T++  FC  G +  A ++  +M   GC+  + +Y
Sbjct: 534 LMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTY 585



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 160/322 (49%), Gaps = 31/322 (9%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP +++FN+L   L K       + + + + + GL PD  T+  L+  F +   V     
Sbjct: 196 PPDVSTFNILIRALCKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALR 255

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++ S     +V+   L+ GLC E RI EA     + + F C P+ +T++ L+NGLC
Sbjct: 256 IKELMVESGCELTSVSVNVLVNGLCKEGRIEEALRFIYEEEGF-C-PDQVTFNALVNGLC 313

Query: 224 RTGHTIVALNL---------------FEEMANGNGKFGVV--------------CKPNTV 254
           RTGH    L +               +  + +G  K G +              C+PNTV
Sbjct: 314 RTGHIKQGLEMMDFMLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTV 373

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY T+I  LCKE  V+ A EL   +  K + PDV T+NSLI G C  ++   A  L  EM
Sbjct: 374 TYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNSLIQGLCLTSNREIAMELFEEM 433

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            ++G  PD  T++++++ LC   ++ EA  LL+ M L G   N   ++TL+DG C   RV
Sbjct: 434 KEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRV 493

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+++F  ME +G   +  +Y
Sbjct: 494 GDAEDIFDQMEMLGVSRSSVTY 515



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 157/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I  +M++ R   P   ++N L G L K  H +    L + L S G+ PD+ T+N 
Sbjct: 354 DEAVEILHHMVS-RDCEPNTVTYNTLIGTLCKENHVEAATELARVLTSKGVLPDVCTFNS 412

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C          +   +      PD   ++ LI+ LC+E R+ EA  L  +++  G
Sbjct: 413 LIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALMLLKEMELSG 472

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C  NV+ Y+TLI+GLC+      A ++F++M       GV    ++VTY T+I+GLCK  
Sbjct: 473 CARNVVVYNTLIDGLCKNNRVGDAEDIFDQME----MLGV--SRSSVTYNTLINGLCKSK 526

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A +L  QM  + + PD  TY +++  FC   D   A  ++  M   G +PD+VT+ 
Sbjct: 527 RVEEAAQLMDQMIMEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYG 586

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCK G++D AS+LL  + ++G+      ++ ++   C   R   A  LF  M   
Sbjct: 587 TLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMRLFREMMEK 646

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 647 GDPPDVITY 655



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 97/289 (33%), Positives = 145/289 (50%), Gaps = 8/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S N+L   L K    +  L         G  PD  T+N L+N  C+ G +  G  ++  
Sbjct: 270 VSVNVLVNGLCKEGRIEEALRFI--YEEEGFCPDQVTFNALVNGLCRTGHIKQGLEMMDF 327

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L   F  D   + SLI GLC    I EA  +   + +  C+PN +TY+TLI  LC+  H
Sbjct: 328 MLEKGFELDVYTYNSLISGLCKLGEIDEAVEILHHMVSRDCEPNTVTYNTLIGTLCKENH 387

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A     E+A      GV+  P+  T+ ++I GLC     + A ELF +MK+K  +PD
Sbjct: 388 VEAA----TELARVLTSKGVL--PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPD 441

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
             TY+ LI   C      EA  LL EM   G   +VV +N ++D LCKN ++ +A  + +
Sbjct: 442 EFTYSILIESLCSERRLKEALMLLKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFD 501

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M + GV+ ++ T++TL++G C + RV  A +L   M   G K   F+Y
Sbjct: 502 QMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMIMEGLKPDKFTY 550



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 142/285 (49%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  T + +  + LF+ +   G  PD +TY+ILI   C   R+    ++
Sbjct: 405 PDVCTFNSLIQGLCLTSNREIAMELFEEMKEKGCDPDEFTYSILIESLCSERRLKEALML 464

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S    + V + +LI GLC  +R+ +A  +F +++  G   + +TY+TLINGLC+
Sbjct: 465 LKEMELSGCARNVVVYNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCK 524

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +     A  L ++M           KP+  TYTT++   C++G + +A ++   M     
Sbjct: 525 SKRVEEAAQLMDQMIMEG------LKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGC 578

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+VTY +LI G C A   + A+ LL  +  +G+      +N ++  LCK  +  EA R
Sbjct: 579 EPDIVTYGTLIGGLCKAGRVDVASKLLRSVQMKGMVLTPQAYNPVIQALCKRKRTKEAMR 638

Query: 345 LLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHAKELFVSMESMG 388
           L   M+ +G  P+  T+  +  G C   G +  A +  V M   G
Sbjct: 639 LFREMMEKGDPPDVITYKIVFRGLCNGGGPIQEAVDFTVEMLEKG 683



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/269 (28%), Positives = 126/269 (46%), Gaps = 9/269 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L K         +F ++   G+     TYN LIN  CK  RV     ++ +++
Sbjct: 480 YNTLIDGLCKNNRVGDAEDIFDQMEMLGVSRSSVTYNTLINGLCKSKRVEEAAQLMDQMI 539

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   +T+++K  C +  I  AA +   +   GC+P+++TY TLI GLC+ G   
Sbjct: 540 MEGLKPDKFTYTTMLKYFCQQGDIKRAADIVQNMTLNGCEPDIVTYGTLIGGLCKAGRVD 599

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           VA  L   +       G+V  P    Y  +I  LCK     +A  LF +M +K   PDV+
Sbjct: 600 VASKLLRSVQMK----GMVLTPQA--YNPVIQALCKRKRTKEAMRLFREMMEKGDPPDVI 653

Query: 290 TYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           TY  +  G C       EA    +EM+++G+ P+  +F  + + LC     D   +L+ +
Sbjct: 654 TYKIVFRGLCNGGGPIQEAVDFTVEMLEKGILPEFPSFGFLAEGLCSLSMEDTLIQLINM 713

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++ +G    + T  +++ GF    + N A
Sbjct: 714 VMEKGRFSQSET--SIIRGFLKIQKFNDA 740



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/128 (29%), Positives = 63/128 (49%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KP+T  Y   +  L K   +   + L  +M    + PDV T+N LI   C A+    A  
Sbjct: 161 KPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRALCKAHQLRPAIL 220

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +L +M + G++PD  TF  +M    +   ++ A R+ ELM+  G    + + + L++G C
Sbjct: 221 MLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTSVSVNVLVNGLC 280

Query: 370 LTGRVNHA 377
             GR+  A
Sbjct: 281 KEGRIEEA 288



 Score = 64.7 bits (156), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 275 LFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           LFL M +D  + PD   YN  +     AN       L  +M+   V PDV TFN+++  L
Sbjct: 150 LFLLMERDFAVKPDTRFYNVALSLLVKANKLKLVETLHSKMVADAVPPDVSTFNILIRAL 209

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK  ++  A  +LE M   G+ P+  TF+TLM GF     V  A  +   M   GC+ T 
Sbjct: 210 CKAHQLRPAILMLEDMPNYGLRPDEKTFTTLMQGFIEEADVEGALRIKELMVESGCELTS 269

Query: 394 FS 395
            S
Sbjct: 270 VS 271


>gi|449487696|ref|XP_004157755.1| PREDICTED: uncharacterized protein LOC101223774 [Cucumis sativus]
          Length = 1315

 Score =  172 bits (435), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 14/308 (4%)

Query: 95   DYMLNMRPSPPPLTS--FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
            D +L+MR     LT+   N +    A+ +  +   ++F  +++ G++PD  TY  +I  +
Sbjct: 782  DMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGY 841

Query: 153  CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            C+ G V      +  ++   F  D    T +I   C +S +  A   F K+   G  PN+
Sbjct: 842  CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 901

Query: 213  ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            I YS++I+GLC+ G    A  L EEM   NG      KPN  T+T++I GLCK+G+ ++A
Sbjct: 902  INYSSMISGLCKRGSVKQAFELLEEMVK-NG-----WKPNVYTHTSLIHGLCKKGWTERA 955

Query: 273  KELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
              LFL++ +  N  P+V TY ++I G+C     + A  L   M +QG+ P+  T+  ++D
Sbjct: 956  FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 1015

Query: 332  ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS-----MES 386
              CK G   +A  L+ELM   G  PNT T+++++DG C  GR   A +L  +     +E+
Sbjct: 1016 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 1075

Query: 387  MGCKHTVF 394
             G  +T+ 
Sbjct: 1076 DGVTYTIL 1083



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 154/310 (49%), Gaps = 8/310 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            N A   F  +  M  SP  L +++ +   L K         L + +   G  P++YT+  
Sbjct: 883  NRAVWFFHKVTKMGLSPN-LINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 941

Query: 148  LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI+  CK G     F +  +++RS  + P+   +T++I G C E ++  A  LF ++K  
Sbjct: 942  LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 1001

Query: 207  GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            G  PN  TY+TLI+G C+ G+   A  L E M+N  G F     PNT TY +I+DGLCK 
Sbjct: 1002 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSN-EGFF-----PNTCTYNSIVDGLCKR 1055

Query: 267  GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            G  ++A +L        I  D VTY  LI   C   D N+A   L +M   G QPD+  +
Sbjct: 1056 GRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLY 1115

Query: 327  NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
              ++   C+   M ++ +L + +I  G+ P   T+++++ G+C   +V+ A + F  M  
Sbjct: 1116 TTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSD 1175

Query: 387  MGCKHTVFSY 396
             GC     SY
Sbjct: 1176 HGCAPDSISY 1185



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 132/282 (46%), Gaps = 6/282 (2%)

Query: 90   AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            AF +F  ++      P + ++  +     K +       LF+R+   GL P+  TY  LI
Sbjct: 955  AFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLI 1014

Query: 150  NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
            +  CK G  S  + ++  +    F P+   + S++ GLC   R  EA  L         +
Sbjct: 1015 DGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIE 1074

Query: 210  PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
             + +TY+ LI+  C+      AL    +M      F V  +P+   YTT+I   C++  +
Sbjct: 1075 ADGVTYTILISEQCKRADMNQALVFLNKM------FKVGFQPDIHLYTTLIAAFCRQNMM 1128

Query: 270  DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
              +++LF ++    + P   TY S+I G+C     + A     +M D G  PD +++  +
Sbjct: 1129 KDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGAL 1188

Query: 330  MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +  LCK  ++DEA +L + MI +G++P   T  TL   +C T
Sbjct: 1189 ISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKT 1230



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 13/279 (4%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P   ++  L     K  ++     L + +++ G FP+  TYN +++  CK GR    F +
Sbjct: 1005 PNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 1064

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L    ++    D V +T LI   C  + + +A     K+   G +P++  Y+TLI   CR
Sbjct: 1065 LNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCR 1124

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  +  LF+E+     K G+   P   TYT++I G C+E  V  A + F +M D   
Sbjct: 1125 QNMMKDSEKLFDEVI----KLGLA--PTKETYTSMICGYCREKKVSLAVKFFQKMSDHGC 1178

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             PD ++Y +LI G C  +  +EA  L   M+D+G+ P  VT   +  E CK      A  
Sbjct: 1179 APDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASA-- 1236

Query: 345  LLELMILRGVNPN--TSTFSTLMDGFCLTGRVNHAKELF 381
               ++IL  +N      T  TL+   C   +V  A   F
Sbjct: 1237 ---MVILERLNKKLWIRTVHTLIRKLCCEKKVALAALFF 1272



 Score = 69.7 bits (169), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 18/222 (8%)

Query: 69   FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
             + E+CK +          N+A    + M  +    P +  +  L     +         
Sbjct: 1083 LISEQCKRADM--------NQALVFLNKMFKV-GFQPDIHLYTTLIAAFCRQNMMKDSEK 1133

Query: 129  LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
            LF  +   GL P   TY  +I  +C+  +VS       ++      PD++++ +LI GLC
Sbjct: 1134 LFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLC 1193

Query: 189  AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
             ESR+ EA  L+  +   G  P  +T  TL    C+T     A+ + E +   N K  + 
Sbjct: 1194 KESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL---NKKLWI- 1249

Query: 249  CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
                  T  T+I  LC E  V  A   F ++ DK +N D VT
Sbjct: 1250 -----RTVHTLIRKLCCEKKVALAALFFHKLLDKEVNVDRVT 1286



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%)

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A  +F +M  + + PD  TY  +I G+C   +  EA+  + EMM++G   D  T  
Sbjct: 811 LVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLT 870

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+   C+   ++ A      +   G++PN   +S+++ G C  G V  A EL   M   
Sbjct: 871 LIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKN 930

Query: 388 GCKHTVFSY 396
           G K  V+++
Sbjct: 931 GWKPNVYTH 939


>gi|255660806|gb|ACU25572.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 418

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LFE
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFE 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G V  A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVXLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 147/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMEDANELFEEMLDNGLVPNGVTFTTLIDGHCKNGRVXLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A     +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAXXYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 665

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/305 (30%), Positives = 154/305 (50%), Gaps = 11/305 (3%)

Query: 94  FDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           F ++ +M  R   P + +   L   L KT        + + L  +G  PD+ TYN+LI+ 
Sbjct: 130 FKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISG 189

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +CK G +     +L R+     +PD V + ++++ LC   ++ EA  +  +     C P+
Sbjct: 190 YCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECYPD 246

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           VITY+ LI   C+      A+ L +EM +        CKP+ VTY  +I+G+CKEG +D+
Sbjct: 247 VITYTILIEATCKESGVGQAMKLLDEMRDKG------CKPDVVTYNVLINGICKEGRLDE 300

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A      M      P+V+T+N ++   C    W +A   L EM+ +G  P VVTFN++++
Sbjct: 301 AIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILIN 360

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G +  A  +LE M   G  PN+ +++ L+   C   ++  A E    M S GC  
Sbjct: 361 FLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYP 420

Query: 392 TVFSY 396
            + +Y
Sbjct: 421 DIVTY 425



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 102/356 (28%), Positives = 173/356 (48%), Gaps = 23/356 (6%)

Query: 49  TAKLKESLRLTVK--------DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           + KLKE++ +  +        D  +    ++  CK SG G        +A  + D M + 
Sbjct: 225 SGKLKEAMEVLDRQMQRECYPDVITYTILIEATCKESGVG--------QAMKLLDEMRD- 275

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           +   P + ++N+L   + K    D  +     + S G  P++ T+NI++   C  GR   
Sbjct: 276 KGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMD 335

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               L  ++R   +P  V F  LI  LC +  I  A  +  K+   GC PN ++Y+ L++
Sbjct: 336 AEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLH 395

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+      A+   + M +        C P+ VTY T++  LCK+G VD A E+  Q+ 
Sbjct: 396 ALCKDKKMERAIEYLDIMVSRG------CYPDIVTYNTLLTALCKDGKVDVAVEILNQLG 449

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K  +P ++TYN++I G       ++A  LL EM  +G++PD++T++ ++  L + GK+D
Sbjct: 450 SKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVD 509

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA      +   GV PN  T++++M G C   +   A +    M + GCK T  SY
Sbjct: 510 EAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSY 565



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/294 (29%), Positives = 148/294 (50%), Gaps = 9/294 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +         +   G  P + T+NILIN  C+
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     VL ++ +   TP+++++  L+  LC + ++  A      + + GC P+++T
Sbjct: 365 KGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVT 424

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TL+  LC+ G   VA+ +  ++ +        C P  +TY T+IDGL K G  D A +
Sbjct: 425 YNTLLTALCKDGKVDVAVEILNQLGSKG------CSPVLITYNTVIDGLSKVGKTDDAIK 478

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +MK K + PD++TY++L+ G       +EA     ++ + GV+P+ +T+N IM  LC
Sbjct: 479 LLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLC 538

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           K  +   A   L  M+ RG  P  +++  L++G    G    A EL   + S G
Sbjct: 539 KARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRG 592



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/241 (36%), Positives = 129/241 (53%), Gaps = 9/241 (3%)

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G +  GF  L  ++     PD +A TSLI+GLC   +  +A  +   L+  G  P+VITY
Sbjct: 124 GELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITY 183

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           + LI+G C+TG    AL L + M+           P+ VTY TI+  LC  G + +A E+
Sbjct: 184 NVLISGYCKTGEIGSALQLLDRMS---------VSPDVVTYNTILRTLCDSGKLKEAMEV 234

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +   +   PDV+TY  LI   C  +   +A  LL EM D+G +PDVVT+NV+++ +CK
Sbjct: 235 LDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICK 294

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            G++DEA R L  M   G  PN  T + ++   C TGR   A++    M   GC  +V +
Sbjct: 295 EGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVT 354

Query: 396 Y 396
           +
Sbjct: 355 F 355



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 137/257 (53%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++   G  P+  +YN L++  CK  ++      
Sbjct: 350 PSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEY 409

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V + +L+  LC + ++  A  +  +L + GC P +ITY+T+I+GL 
Sbjct: 410 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLS 468

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L +EM  G G      KP+ +TY+T++ GL +EG VD+A   F  +++  
Sbjct: 469 KVGKTDDAIKLLDEM-KGKG-----LKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMG 522

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+ +TYNS++ G C A     A   L  M+ +G +P   ++ ++++ L   G   EA 
Sbjct: 523 VKPNAITYNSIMLGLCKARQTVRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEAL 582

Query: 344 RLLELMILRGVNPNTST 360
            LL  +  RGV   +S 
Sbjct: 583 ELLNELCSRGVVKKSSA 599



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L + G +++  +    M  +   PD++   SLI G C      +A  ++  + D G  PD
Sbjct: 120 LVRNGELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPD 179

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V+T+NV++   CK G++  A +LL+ M    V+P+  T++T++   C +G++  A E+  
Sbjct: 180 VITYNVLISGYCKTGEIGSALQLLDRM---SVSPDVVTYNTILRTLCDSGKLKEAMEVLD 236

Query: 383 SMESMGCKHTVFSY 396
                 C   V +Y
Sbjct: 237 RQMQRECYPDVITY 250


>gi|255660798|gb|ACU25568.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 418

 Score =  172 bits (435), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 147/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    +    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++    V+   +L     P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM           KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
          Length = 1007

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ +F  M N +   P + ++  L   L  +      + LF R++  G+FP+  TYN L
Sbjct: 338 DAWRLFVDMKN-KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   +  R+ + FVVL  + R+  +P+ V +  +IKG C      +A  +   +   G 
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N++TY+T+I G C +G+T  AL + + M +G       CKP+  +YT +I G CK   
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISK 510

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A  LF +M D  + P+ VTY +LI G+C     + A  LL  M   G +P+V T+NV
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K      A  L ++MI  G+ PN  T++ ++DG C  G  + A E+F  M   G
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 389 CKHTVFSY 396
           C   + +Y
Sbjct: 631 CLPNLLTY 638



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L +++ L   L++      V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ 
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++  S  +PD   +TS+I G C +  +  A  +F ++   GC+PN +TYSTLINGLC +G
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A +L  EM       G++  P   T T  I  LC  G  + A  LF+ MK+K   P
Sbjct: 300 RVNEAFDLIREMI----LHGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G C +     A  L   M   GV P+ VT+N +++ L +N ++  A  +L
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM   G +PN  T++ ++ G+C+ G    A  +  +M   G    + +Y
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTY 463



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 7/282 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  + + ML  R     L ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 441 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI  FCK+ ++   F +   ++     P+ V +T+LI G C + ++  A +L   +K  
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC+PNV TY+ LI+GL +  +   A  L + M    G F     PN VTYT +IDGLCK 
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE-EGIF-----PNVVTYTAMIDGLCKN 613

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A E+F +M ++   P+++TY+SLI          EA  L  E+   G+ PD +T+
Sbjct: 614 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITY 673

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +++    +GK++ A   L  MI  G  P   T+  L+ G 
Sbjct: 674 VKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 155/356 (43%), Gaps = 64/356 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L K  +     ++ K++  + + PD +TY  +I   C+   +     V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIME----------------------------- 195
             ++ +    P+ V +++LI GLC   R+ E                             
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 196 ------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------- 239
                 A  LF  +K  GC+PNV TY+ LI+GLC +G   VA+ LF  M+          
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 392

Query: 240 ----------NGNGKFGVV---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                     N   K+  V         C PN VTY  +I G C  G   KA  +   M 
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            +  + ++VTYN++I G+C + +   A  +L  M D G +PD  ++  ++   CK  KM+
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  L   M+  G+ PN  T++ L+DG+C   +++ A  L   M+  GC+  V +Y
Sbjct: 513 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIK   ++  +    +    L   G +  +  YS L+  L R G T   ++ +  M +  
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE- 209

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              GV  +PN + Y  +I+ LCK+G V  A+ +  ++ +  ++PD  TY S+I G C  +
Sbjct: 210 ---GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 264

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D + A  +  +M  +G +P+ VT++ +++ LC +G+++EA  L+  MIL G+ P   T +
Sbjct: 265 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 324

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   C  G    A  LFV M++ GC+  V++Y
Sbjct: 325 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ + ++SLI+ L  E ++ EA  LF +L+  G  P+ ITY  +I     
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL--------------------C 264
           +G    A N    M          C+P   TY  +I GL                    C
Sbjct: 683 SGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNC 736

Query: 265 KEGF--VDKAKELFLQMKDKNINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
             G+   D+     +  K   ++P   V   N+L+     A  W EAN LL  M+ QG+ 
Sbjct: 737 SFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLC 796

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD   +N ++  L +   +D A  + + M  +G   + + +  L+   C   R   A+  
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 381 FVSM 384
           F +M
Sbjct: 857 FENM 860



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/221 (23%), Positives = 79/221 (35%), Gaps = 13/221 (5%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           + + D  L   P   P  SF        +T   D V  +  +L        +   N L++
Sbjct: 719 YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
                GR      +LG ++     PD  A+ SL+  L     +  A  +F  +   GC+ 
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           ++  Y  LI  LC+      A   FE M            P+ V    +IDGL ++G+ D
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE-ANCL 310
              E    M+ +   P    Y  L         W   A C+
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTILAREASKKRSWKHVAGCI 927


>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
 gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
          Length = 699

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 105/329 (31%), Positives = 154/329 (46%), Gaps = 43/329 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K   +D    + + + + G  PD  T++ LI+  CK G     F V
Sbjct: 124 PDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRV 183

Query: 165 L------------------------------------GRILRSCFTPDAVAFTSLIKGLC 188
           L                                    G ++   FTP  + F  +I G C
Sbjct: 184 LEDVIQRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFC 243

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               +  A  L   +   GC PNV T++ LI GLC+      A  L E+M  G       
Sbjct: 244 KAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGG------ 297

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C PN VTY+T+I+GLCK+G VD A ELF  M+ +N  P+VVT+N LI G C A    EA 
Sbjct: 298 CSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEAR 357

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN-PNTSTFSTLMDG 367
            L   M + G  PD++T+N ++D LCK+ ++DEA +L + +   GV+  N  T+STL  G
Sbjct: 358 QLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHG 417

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   GR+  A  +F  +   G    + +Y
Sbjct: 418 YAALGRMADACRIFSMLVDKGFSPDLATY 446



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 161/325 (49%), Gaps = 45/325 (13%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S N     L +       L+LF+   +    P+ +TY ILI  F   G +     +L  +
Sbjct: 24  SCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEM 83

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
             S F  +AV  T+L+KGLC   R++EA   F  + A  C P+V+TY+ L++ LC+ G  
Sbjct: 84  KSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVMTYTALVHALCKAGKF 142

Query: 229 IVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCK------------------EGFV 269
             A  +  EM A G       C P+TVT++T+IDGLCK                   G  
Sbjct: 143 DEAQGMLREMVAQG-------CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNS 195

Query: 270 DKAKELFLQ------------------MKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           D A E  +Q                  +  K   P V+ +N +I+GFC A D + A  LL
Sbjct: 196 DAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLL 255

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M+++G  P+V TF +++  LCK  ++ EA +LLE M++ G +PN  T+ST+++G C  
Sbjct: 256 EVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQ 315

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G+V+ A ELF  ME   C   V ++
Sbjct: 316 GQVDDAYELFQLMERRNCPPNVVTH 340



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 98/339 (28%), Positives = 158/339 (46%), Gaps = 32/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F   +  R   P   ++ +L    +     D  + L + + S+G   +   +  
Sbjct: 39  QEALALFRNAM-ARICMPNKFTYGILIRGFSSAGDLDIAIQLLEEMKSSGFEGNAVVHTT 97

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   C  GRV         + + C  PD + +T+L+  LC   +  EA  +  ++ A G
Sbjct: 98  LMKGLCDAGRVVEALEHFRAMAKDC-APDVMTYTALVHALCKAGKFDEAQGMLREMVAQG 156

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEE-----MANGNGKF----------------- 245
           C P+ +T+STLI+GLC+ G    A  + E+     M N +  F                 
Sbjct: 157 CAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMGNSDAAFETIIQRLCNKYNSVELA 216

Query: 246 ----GVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
               GVV      P  + +  +I+G CK   +D A +L   M +K   P+V T+  LI G
Sbjct: 217 SKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITG 276

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C AN   EA  LL +M+  G  P+VVT++ +++ LCK G++D+A  L +LM  R   PN
Sbjct: 277 LCKANRVGEAQQLLEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPN 336

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T + L+DG C   R+  A++L+  M   GC   + +Y
Sbjct: 337 VVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITY 375



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 150/293 (51%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  FNL+     K K  D+   L + +   G  P+++T+ ILI   CK  RV     +
Sbjct: 230 PTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQL 289

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++    +P+ V ++++I GLC + ++ +A  LF  ++   C PNV+T++ LI+GLC+
Sbjct: 290 LEKMVMGGCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCK 349

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L+  M          C P+ +TY ++IDGLCK   VD+A +LF  + +  +
Sbjct: 350 AKRIEEARQLYHRMRETG------CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESGV 403

Query: 285 NP-DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  + VTY++L HG+       +A  +   ++D+G  PD+ T+  ++ E CK  +  E  
Sbjct: 404 SAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVV 463

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+E M  +G  P  +T S ++ G         A +LF SM + GC      Y
Sbjct: 464 ELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERAIQLFDSMAARGCTDDALIY 516



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 69/369 (18%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A+ +F  M   R  PP + + N+L   L K K  +    L+ R+  TG  PD+ TYN 
Sbjct: 319 DDAYELFQLM-ERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNS 377

Query: 148 LINCFCKMGRVS--------------------------HGFVVLGRILRSC--------- 172
           LI+  CK  +V                           HG+  LGR+  +C         
Sbjct: 378 LIDGLCKSFQVDEAFQLFQTIPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDK 437

Query: 173 -FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
            F+PD   +TSLI   C  SR +E   L  ++ + G  P V T S ++ GL    HT  A
Sbjct: 438 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 497

Query: 232 LNLFEEMA---------------NGNGKFG-----------VVCK------PNTVTYTTI 259
           + LF+ MA                G  +             V+ K      P++     +
Sbjct: 498 IQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSSSAVDAL 557

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++ LC+ G  D AK+L  +M ++     V +YN L+ G      W+EA  +   M+  G 
Sbjct: 558 VESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVSAGP 617

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P++ T NV++  LC   K+D+A  L++ M   G  P+  T +TL+ G+C +GR + A++
Sbjct: 618 APEISTVNVVISWLCSAAKVDDAYELVQRMSKLGCCPDIETCNTLIGGYCKSGRADLARK 677

Query: 380 LFVSMESMG 388
           L   M   G
Sbjct: 678 LLEEMTEAG 686



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 93/347 (26%), Positives = 154/347 (44%), Gaps = 44/347 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ + + M+  +   P + +F +L   L K         L +++   G  P++ TY+ 
Sbjct: 249 DSAYKLLEVMIE-KGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTYST 307

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK G+V   + +   + R    P+ V    LI GLC   RI EA  L+ +++  G
Sbjct: 308 VINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETG 367

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P++ITY++LI+GLC++     A  LF+ +         V   N VTY+T+  G    G
Sbjct: 368 CAPDIITYNSLIDGLCKSFQVDEAFQLFQTIPESG-----VSAANAVTYSTLFHGYAALG 422

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFC---------------------------- 299
            +  A  +F  + DK  +PD+ TY SLI  +C                            
Sbjct: 423 RMADACRIFSMLVDKGFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLS 482

Query: 300 -------YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL- 351
                    N    A  L   M  +G   D + +N++++ + +  K D+A  +LE +I  
Sbjct: 483 AVLGGLFEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDK 542

Query: 352 --RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             R  NP++S    L++  C  G+ + AK+L   M   G    V SY
Sbjct: 543 RDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSY 589



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 134/292 (45%), Gaps = 43/292 (14%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++++ N  ++  C++ R      +    +     P+   +  LI+G  +   +  A  L 
Sbjct: 21  NVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFSSAGDLDIAIQLL 80

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++K+ G + N + ++TL+ GLC  G  + AL  F  MA         C P+ +TYT ++
Sbjct: 81  EEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAMAKD-------CAPDVMTYTALV 133

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC--------------------- 299
             LCK G  D+A+ +  +M  +   PD VT+++LI G C                     
Sbjct: 134 HALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGLCKFGSEEQAFRVLEDVIQRGMG 193

Query: 300 ------------YANDWNE---ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
                         N +N    A+ +L  ++ +G  P V+ FN++++  CK   +D A +
Sbjct: 194 NSDAAFETIIQRLCNKYNSVELASKVLGVVIAKGFTPTVLMFNLVINGFCKAKDLDSAYK 253

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LLE+MI +G  PN  TF+ L+ G C   RV  A++L   M   GC   V +Y
Sbjct: 254 LLEVMIEKGCVPNVFTFTILITGLCKANRVGEAQQLLEKMVMGGCSPNVVTY 305



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 1/122 (0%)

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF       +  +V + N  +   C  N   EA  L    M +   P+  T+ +++    
Sbjct: 9   LFFDWARSRVGHNVFSCNCALDMLCRLNRRQEALALFRNAMARICMPNKFTYGILIRGFS 68

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
             G +D A +LLE M   G   N    +TLM G C  GRV  A E F +M +  C   V 
Sbjct: 69  SAGDLDIAIQLLEEMKSSGFEGNAVVHTTLMKGLCDAGRVVEALEHFRAM-AKDCAPDVM 127

Query: 395 SY 396
           +Y
Sbjct: 128 TY 129


>gi|255660812|gb|ACU25575.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 418

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L  EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K  + D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGNLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 HLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGNLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C       A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G   +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYAPSVVT 418


>gi|125548803|gb|EAY94625.1| hypothetical protein OsI_16402 [Oryza sativa Indica Group]
          Length = 769

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 152/302 (50%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   G+ PD+YTY ILI+ FCK G +     +
Sbjct: 455 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 514

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     +P  V +T+LI       ++ +A  +F ++   GC+PN +TY  L++GLC+
Sbjct: 515 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 574

Query: 225 TGHTIVALNLFEEMA----NGNGKFGVVCK------PNTVTYTTIIDGLCKEGFVDKAKE 274
            G+   A  ++ ++     + +  F   C+      PN VTY  ++DGLCK   VD A E
Sbjct: 575 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 634

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y++LI GFC A   + A  + ++M   G  P V T+  ++D + 
Sbjct: 635 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 694

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+G++D A ++L  M+     PN  T++ ++DG C  G    A +L   ME  GC   V 
Sbjct: 695 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 754

Query: 395 SY 396
           +Y
Sbjct: 755 TY 756



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 431 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 490

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   +T LI   C    I +A  LF ++++ GC P V+TY+ LI+   +      A ++F
Sbjct: 491 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 550

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---------------K 280
             M +        C+PN VTY  ++DGLCK G + KA E++ ++               +
Sbjct: 551 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 604

Query: 281 DKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           D++ + P+VVTY +L+ G C A+  + A+ LL  M+  G +P+ + ++ ++D  CK GK+
Sbjct: 605 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 664

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D A  +   M   G  P+  T+++L+D     GR++ A ++   M    C   V +Y
Sbjct: 665 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTY 721



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/301 (30%), Positives = 147/301 (48%), Gaps = 23/301 (7%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A    +AF +F  M  M    P + ++ +L     K    +    LF+ + S G  P + 
Sbjct: 470 ATKVEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 528

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY  LI+ + K  +V     +  R++ +   P+ V + +L+ GLC    I +A  ++ KL
Sbjct: 529 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 588

Query: 204 KA----------FGCK------PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
                       F C+      PNV+TY  L++GLC+      A  L + M +       
Sbjct: 589 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG----- 643

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C+PN + Y  +IDG CK G +D A+E+FLQM      P V TY SLI         + A
Sbjct: 644 -CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 702

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L +M+     P+VVT+  ++D LC+ G+ ++A +LL LM  +G +PN  T++ L+DG
Sbjct: 703 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 762

Query: 368 F 368
            
Sbjct: 763 L 763



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 147/350 (42%), Gaps = 65/350 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K K       +   + + G  P+   +N L++ +C     ++ + +
Sbjct: 309 PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 368

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRI----------------MEAAALFTKL----- 203
           L R+      P  V +   I  +C + ++                + A  +  K+     
Sbjct: 369 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 428

Query: 204 -----------KAF---------GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
                      KAF         G  P+  TYS +I  LC       A  LF+EM     
Sbjct: 429 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKM--- 485

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
              V   P+  TYT +ID  CK G +++A+ LF +M+    +P VVTY +LIH +  A  
Sbjct: 486 ---VGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 542

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI------------- 350
             +AN +   M+D G +P+ VT+  ++D LCK G + +A  +   +I             
Sbjct: 543 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 602

Query: 351 ---LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK--HTVFS 395
                 + PN  T+  L+DG C   +V+HA EL  +M S GC+  H V+ 
Sbjct: 603 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYD 652



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 12/286 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 286 LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 345

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT------IV 230
              F SL+   C E     A  L  ++   GC P  + Y+  I  +C            +
Sbjct: 346 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 405

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  ++ EM   N      C  N V        LC  G  DKA +L  +M  K   PD  T
Sbjct: 406 AEKIYGEMLAAN------CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTST 459

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y+ +I   C+A    +A  L  EM   GV PDV T+ +++D  CK G +++A  L E M 
Sbjct: 460 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 519

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +P   T++ L+  +    +V  A ++F  M   GC+    +Y
Sbjct: 520 SVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 565



 Score = 99.0 bits (245), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 134/363 (36%), Gaps = 85/363 (23%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            N+L     +   ++  L    RL   G  P   TYN L+      G+V  GF V   + 
Sbjct: 177 LNVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLSSAGQVDLGFRVQKEMS 236

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S F  D          LC E R  +A  +  + + F  K + +  + +I+GL    +  
Sbjct: 237 ESGFCMDRFTVGCFAHALCKEGRWADALDMIER-EDF--KLDTVLCTHMISGLMEASYFD 293

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A++    M   +      C PN VTY T++ G  K+  +   K +   M  +  NP+  
Sbjct: 294 EAMSFLHRMRCNS------CIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPS 347

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN------------- 336
            +NSL+H +C   D+  A  LL  M   G  P  V +N+ +  +C               
Sbjct: 348 LFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAE 407

Query: 337 ----------------------------GKMDEASRLLELMILRGVNPNTSTFS------ 362
                                       GK D+A +L++ M+ +G  P+TST+S      
Sbjct: 408 KIYGEMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFL 467

Query: 363 -----------------------------TLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
                                         L+D FC  G +  A+ LF  M S+GC  TV
Sbjct: 468 CHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTV 527

Query: 394 FSY 396
            +Y
Sbjct: 528 VTY 530



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 100/229 (43%), Gaps = 26/229 (11%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VLGR+L             L++  C      EA     +LK FG +P+ +TY+ L+  L 
Sbjct: 172 VLGRLL-----------NVLVRRCCRGGMWNEALEELGRLKDFGYRPSKVTYNALVQVLS 220

Query: 224 RTGHTIVALNLFEEMANGN---GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             G   +   + +EM+       +F V C             LCKEG    A ++   ++
Sbjct: 221 SAGQVDLGFRVQKEMSESGFCMDRFTVGC---------FAHALCKEGRWADALDM---IE 268

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            ++   D V    +I G   A+ ++EA   L  M      P+VVT+  ++    K  ++ 
Sbjct: 269 REDFKLDTVLCTHMISGLMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLG 328

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
              R++ +M+  G NPN S F++L+  +C      +A +L   M + GC
Sbjct: 329 WCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGC 377


>gi|357473123|ref|XP_003606846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355507901|gb|AES89043.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 624

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 161/327 (49%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +         ++    +FK +    L PD YTYN  I+  CK  R+     V
Sbjct: 250 PNVVTYNTVINGYCLRGKFEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGV 309

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC-----------------------------------A 189
           L ++L S   P+AV + +LI G C                                    
Sbjct: 310 LCKLLESGLVPNAVTYNALIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFL 369

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E RI EA  +  +++  G +P+V+TY+  ING CR G+   AL+LF+EM   N       
Sbjct: 370 EKRIEEAEDMIKEMREKGVEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKN------I 423

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P   TYT++ID   K   + +A+E F +   + + PD++ +N+LI G C   + + A  
Sbjct: 424 RPTVETYTSLIDVFGKRNRMSEAEEKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQ 483

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL EM +  V PD VTFN +M   C+  K++EA +LL+ M  RG+ P+  +++TL+ G+ 
Sbjct: 484 LLKEMDNAKVVPDEVTFNTLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYS 543

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  A E+F  M S+G   T+ +Y
Sbjct: 544 KRGDMKDALEVFDEMLSLGFDPTLLTY 570



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/291 (30%), Positives = 149/291 (51%), Gaps = 12/291 (4%)

Query: 78  GQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
            +GD+     ++AF   D M+N R     + ++NLL   L   K  +    + K +   G
Sbjct: 334 NKGDL-----DKAFAYRDEMMN-RGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD+ TYNI IN +C+ G       +   ++     P    +TSLI      +R+ EA 
Sbjct: 388 VEPDVVTYNIQINGYCRCGNAKKALSLFDEMVEKNIRPTVETYTSLIDVFGKRNRMSEAE 447

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
             F K    G  P++I ++ LI+G C  G+   A  L +EM N      VV  P+ VT+ 
Sbjct: 448 EKFKKSIKEGMLPDIIMFNALIDGHCVNGNIDRAFQLLKEMDNAK----VV--PDEVTFN 501

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++ G C+E  V++AK+L  +MK++ I PD ++YN+LI G+    D  +A  +  EM+  
Sbjct: 502 TLMQGYCRERKVEEAKKLLDEMKERGIKPDHISYNTLISGYSKRGDMKDALEVFDEMLSL 561

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           G  P ++T+N ++    K G+ D A  LL  M  +G+ P+ ST+  +++  
Sbjct: 562 GFDPTLLTYNALIQGYSKIGEADHAEELLREMQSKGITPDDSTYLYVIEAM 612



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/308 (28%), Positives = 152/308 (49%), Gaps = 15/308 (4%)

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT---YNIL 148
           CI   +L   PSP P  SF++L   L    H  T   +F  L+      ++ T   +++L
Sbjct: 100 CITLCILYRLPSPKP--SFHILQPIL----HTTTPTVIFNELSLARNRLNVKTTLVFDLL 153

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C+  +       L  +  +   P      SL+  L   ++I  A  ++ ++     
Sbjct: 154 LSAYCQFRKPDEALECLNLMKENEIIPKTETCNSLLSLLLKLNKIKMAWFVYEEMVKMNI 213

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K +++T++ +IN LCR G    A +    M      +GV  KPN VTY T+I+G C  G 
Sbjct: 214 KSSIVTFNIMINILCREGKWKKAKDFIGHME----VYGV--KPNVVTYNTVINGYCLRGK 267

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A ++F  MKDKN+ PD  TYNS I   C      EA+ +L ++++ G+ P+ VT+N 
Sbjct: 268 FEAASKIFKTMKDKNLKPDCYTYNSFISRLCKERRIEEASGVLCKLLESGLVPNAVTYNA 327

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  C  G +D+A    + M+ RG+  +  T++ L+    L  R+  A+++   M   G
Sbjct: 328 LIDGCCNKGDLDKAFAYRDEMMNRGIVASVFTYNLLIHALFLEKRIEEAEDMIKEMREKG 387

Query: 389 CKHTVFSY 396
            +  V +Y
Sbjct: 388 VEPDVVTY 395


>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
          Length = 472

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/277 (35%), Positives = 145/277 (52%), Gaps = 10/277 (3%)

Query: 126 VLSLFKRLNSTG-----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
            ++LF R  S       L P  YTY IL++C  +  R        G++LR+    DA+  
Sbjct: 56  AVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDAIIA 115

Query: 181 TSLIKGLCAESRIMEA-AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           + L+KG C   R  EA   L  +    GC P+V +Y+ L+  LC  G +  A NL   MA
Sbjct: 116 SHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMA 175

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
            G    G VC P+ V Y T+IDG  KEG V+KA +LF +M  + I PD+VTYNS++H  C
Sbjct: 176 EG----GTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALC 231

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A   ++A   L +M+++ V P+  T+N ++      G+  EA R+ + M    + P+  
Sbjct: 232 KARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVV 291

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T S LM   C  G++  A+++F +M   G    VFSY
Sbjct: 292 TLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 328



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 158/317 (49%), Gaps = 13/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  D 
Sbjct: 53  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDA 112

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              + L+  FC+  R      ++L R       PD  ++  L+K LC + +  +A  L  
Sbjct: 113 IIASHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLR 172

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C P+V+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY ++
Sbjct: 173 MMAEGGTVCSPDVVAYNTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDLVTYNSV 226

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + P+  TYN+LI+G+     W EA  +  EM    +
Sbjct: 227 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 286

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVVT +++M  LCK GK+ EA  + + M ++G NP+  +++ +++G+   G +    +
Sbjct: 287 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTD 346

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G     +++
Sbjct: 347 LFDLMLGDGIAPDFYTF 363



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/268 (28%), Positives = 132/268 (49%), Gaps = 6/268 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K    +    LFK +   G+ PDL TYN +++  CK   +      
Sbjct: 183 PDVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAF 242

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     P+   + +LI G  +  +  EA  +F +++     P+V+T S L+  LC+
Sbjct: 243 LRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK 302

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A ++F+ MA   G+      P+  +Y  +++G   +G +    +LF  M    I
Sbjct: 303 YGKIKEARDVFDTMAM-KGQ-----NPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGI 356

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  T+N  I  +      ++A  +  EM D GV+PDVVT+  ++  LC+ GKMD+A  
Sbjct: 357 APDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAME 416

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTG 372
               MI +GV P+   ++ L+ GFC  G
Sbjct: 417 KFNQMIDQGVAPDKYAYNCLIQGFCTHG 444



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 144/309 (46%), Gaps = 13/309 (4%)

Query: 94  FDYMLNMRPS---PPPLTSFNLLFGCL---AKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            D +L+  P     P + S+N+L   L    K+   D +L +      T   PD+  YN 
Sbjct: 132 LDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAE-GGTVCSPDVVAYNT 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ F K G V+    +   +++    PD V + S++  LC    + +A A   ++    
Sbjct: 191 VIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKR 250

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN  TY+ LI G   TG    A+ +F+EM   +        P+ VT + ++  LCK G
Sbjct: 251 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHS------ILPDVVTLSMLMGSLCKYG 304

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A+++F  M  K  NPDV +YN +++G+       +   L   M+  G+ PD  TFN
Sbjct: 305 KIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFN 364

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V +      G +D+A  +   M   GV P+  T+ T++   C  G+++ A E F  M   
Sbjct: 365 VQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQ 424

Query: 388 GCKHTVFSY 396
           G     ++Y
Sbjct: 425 GVAPDKYAY 433



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 81/188 (43%), Gaps = 17/188 (9%)

Query: 47  TTTAKLKESLRL--------TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
           ++T + KE++R+         + D  +L   +   CK    G I      EA  +FD M 
Sbjct: 266 SSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCK---YGKI-----KEARDVFDTMA 317

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            M+   P + S+N++    A       +  LF  +   G+ PD YT+N+ I  +   G +
Sbjct: 318 -MKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVQIKAYANCGML 376

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
               ++   +      PD V + ++I  LC   ++ +A   F ++   G  P+   Y+ L
Sbjct: 377 DKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCL 436

Query: 219 INGLCRTG 226
           I G C  G
Sbjct: 437 IQGFCTHG 444



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 1/107 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML      P   +FN+     A     D  + +F  +   G+ PD+ TY  +I   
Sbjct: 347 LFDLMLG-DGIAPDFYTFNVQIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAAL 405

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           C++G++        +++     PD  A+  LI+G C    +++   +
Sbjct: 406 CRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGILLKTQGI 452


>gi|410109883|gb|AFV61021.1| pentatricopeptide repeat-containing protein 11, partial
           [Burroughsia fastigiata]
          Length = 431

 Score =  171 bits (434), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/280 (35%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL + FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEFLECGYPASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G  P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFKLKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D N+A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLNQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMMREMLSVGLKPDTGTY 390



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 159/291 (54%), Gaps = 16/291 (5%)

Query: 79  QGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           +GDI       A  +FD +    +RPS   + S+N L     +    D    L   ++++
Sbjct: 155 EGDIRV-----AQSVFDAITKWGLRPS---VVSYNTLMNGYIRLGDLDEGFKLKSAMHAS 206

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A
Sbjct: 207 GVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLA 266

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             ++ ++ +    P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TY
Sbjct: 267 MEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKG------LKPDKITY 320

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           TT+IDG CKEG +D A E   +M  +NI  D V Y +LI G C      +A  ++ EM+ 
Sbjct: 321 TTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMMREMLS 380

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
            G++PD  T+ +I++E+CK G + + S+LL+ M   G  P+  T++ LM+G
Sbjct: 381 VGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTYNVLMNG 431



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILXHRFCKEGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFK 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++  A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMHASGVXPDVYTYSVLINGLCKESKMDXANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G +++A +L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLNQAHDLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++  M+  G+ P+T T++ +++  C  G V    +L   M+  G   +V +Y
Sbjct: 373 KMMREMLSVGLKPDTGTYTMIINEVCKKGDVGKGSKLLKEMQXDGHAPSVVTY 425


>gi|255660790|gb|ACU25564.1| pentatricopeptide repeat-containing protein [Verbena hispida]
          Length = 418

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHGFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G K +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 64/160 (40%), Gaps = 36/160 (22%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   +   GL PD  TY  LI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAQDLIDEMIMKGLKPDKITYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA------------- 196
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A             
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 197 ----------------------AALFTKLKAFGCKPNVIT 214
                                 + L  +++  G KP+V+T
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
          Length = 584

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 161/340 (47%), Gaps = 38/340 (11%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D ML  R   P + ++ +L     K   Y   + L   +   G  PD+ TYN+++
Sbjct: 179 ALAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 237

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   GC 
Sbjct: 238 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 297

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--------------------- 248
           PNV+T++ LI+ LCR G    AL + E++     K+G                       
Sbjct: 298 PNVVTFNMLISFLCRKGLVEPALEVLEQIP----KYGCSPNSLSYNPLLHAFCKQKKMDK 353

Query: 249 ------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                       C P+ V+Y T++  LC+ G VD A EL  Q+KDK   P +++YN++I 
Sbjct: 354 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 413

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A    EA  LL EM+ +G+QPD++T++ I   LC+  ++++A R    +   G+ P
Sbjct: 414 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP 473

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           NT  ++ ++ G C     + A +LF  M   GC     +Y
Sbjct: 474 NTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 513



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 82/284 (28%), Positives = 150/284 (52%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L   +   G  P++ T+N+LI+  C+ G V     V
Sbjct: 263 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 322

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   +P+++++  L+   C + ++ +A A    + + GC P++++Y+TL+  LCR
Sbjct: 323 LEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 382

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G   VA+ L  ++ +        C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 383 SGEVDVAVELLHQLKDKG------CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 436

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C  +   +A     ++ D G++P+ V +N I+  LCK  +   A  
Sbjct: 437 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAID 496

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   MI  G  PN ST++ L++G    G +  A++L   + S G
Sbjct: 497 LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 540



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 152/327 (46%), Gaps = 59/327 (18%)

Query: 118 AKTKHYDTVLSLFKRLNSTGLF-----------PDLYTYNILINCFCKMGRV--SHGFVV 164
           A+     T  +L K+L+++G             PD+  YN ++  +C  G+V  +  +  
Sbjct: 93  ARRPDAGTCAALIKKLSASGRTAEARRVLAACGPDVMAYNAMMAGYCGAGQVDAARRWCA 152

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + R  +T D     +LI+GLC   R   A A+  ++    C P+V+TY+ L+   C+
Sbjct: 153 ERAVERDAYTCD-----TLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCK 207

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L +EM +        C P+ VTY  +++G+C+EG VD A E    +     
Sbjct: 208 RSGYKQAMKLLDEMRDKG------CTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGC 261

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG------- 337
            P+ V+YN ++ G C A  W +A  L+ EM  +G  P+VVTFN+++  LC+ G       
Sbjct: 262 EPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALE 321

Query: 338 ----------------------------KMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
                                       KMD+A   L+LM+ RG  P+  +++TL+   C
Sbjct: 322 VLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALC 381

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            +G V+ A EL   ++  GC   + SY
Sbjct: 382 RSGEVDVAVELLHQLKDKGCAPVLISY 408



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/230 (31%), Positives = 112/230 (48%), Gaps = 14/230 (6%)

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R++ S   PDA    +LIK L A  R  EA  +        C P+V+ Y+ ++ G C  G
Sbjct: 88  RLVGSARRPDAGTCAALIKKLSASGRTAEARRVLA-----ACGPDVMAYNAMMAGYCGAG 142

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A     E A          + +  T  T+I GLC  G    A  +  +M  +   P
Sbjct: 143 QVDAARRWCAERA---------VERDAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVP 193

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTY  L+   C  + + +A  LL EM D+G  PD+VT+NV+++ +C+ G++D+A   L
Sbjct: 194 DVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFL 253

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +   G  PNT +++ ++ G C   R   A+EL   M   GC   V ++
Sbjct: 254 KNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTF 303



 Score = 75.1 bits (183), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 63/143 (44%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + L  +   P L S+N +   L K       L L   + S GL PD+ TY+ +    C+ 
Sbjct: 394 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 453

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
            R+       G++      P+ V + ++I GLC       A  LF  +   GC PN  TY
Sbjct: 454 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 513

Query: 216 STLINGLCRTGHTIVALNLFEEM 238
           + LI GL   G    A +L +E+
Sbjct: 514 TILIEGLAYEGLIKEARDLLDEL 536


>gi|15240249|ref|NP_200948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171473|sp|Q9FLJ4.1|PP440_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g61400
 gi|9757861|dbj|BAB08495.1| unnamed protein product [Arabidopsis thaliana]
 gi|332010079|gb|AED97462.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 41/288 (14%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +F+ +   G+ P+LYTY+ +I+ +CK G V   + +   IL +   P+ V F +L+ G C
Sbjct: 256 MFELMKKHGVLPNLYTYSAMIDGYCKTGNVRQAYGLYKEILVAELLPNVVVFGTLVDGFC 315

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               ++ A +LF  +  FG  PN+  Y+ LI+G C++G+ + A+ L  EM + N      
Sbjct: 316 KARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLN------ 369

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+  TYT +I+GLC E  V +A  LF +MK++ I P   TYNSLIHG+C   +  +A 
Sbjct: 370 LSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQAL 429

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELC---------------------------------- 334
            L  EM   GV+P+++TF+ ++D  C                                  
Sbjct: 430 DLCSEMTASGVEPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAH 489

Query: 335 -KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            K   M EA RL   M+  G++PN  TF+ L+DGF   GR++ A + +
Sbjct: 490 FKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAIDFY 537



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 158/297 (53%), Gaps = 7/297 (2%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M+ SP      ++L G L + + +D+V   ++ + S GL PD++ Y +L  C  K G  S
Sbjct: 158 MKCSPDSKACLSILNG-LVRRRRFDSVWVDYQLMISRGLVPDVHIYFVLFQCCFKQGLYS 216

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +L  +      P+   +T  I  LC ++++ EA  +F  +K  G  PN+ TYS +I
Sbjct: 217 KKEKLLDEMTSLGIKPNVYIYTIYILDLCRDNKMEEAEKMFELMKKHGVLPNLYTYSAMI 276

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +G C+TG+   A  L++E+            PN V + T++DG CK   +  A+ LF+ M
Sbjct: 277 DGYCKTGNVRQAYGLYKEILVAE------LLPNVVVFGTLVDGFCKARELVTARSLFVHM 330

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
               ++P++  YN LIHG C + +  EA  LL EM    + PDV T+ ++++ LC   ++
Sbjct: 331 VKFGVDPNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQV 390

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            EA+RL + M    + P+++T+++L+ G+C    +  A +L   M + G +  + ++
Sbjct: 391 AEANRLFQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITF 447



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/305 (29%), Positives = 139/305 (45%), Gaps = 41/305 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  F  L     K +   T  SLF  +   G+ P+LY YN LI+  CK G +     +
Sbjct: 302 PNVVVFGTLVDGFCKARELVTARSLFVHMVKFGVDPNLYVYNCLIHGHCKSGNMLEAVGL 361

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     +PD   +T LI GLC E ++ EA  LF K+K     P+  TY++LI+G C+
Sbjct: 362 LSEMESLNLSPDVFTYTILINGLCIEDQVAEANRLFQKMKNERIFPSSATYNSLIHGYCK 421

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL+L  EM       GV  +PN +T++T+IDG C    +  A  L+ +M  K I
Sbjct: 422 EYNMEQALDLCSEMTAS----GV--EPNIITFSTLIDGYCNVRDIKAAMGLYFEMTIKGI 475

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE------------ 332
            PDVVTY +LI       +  EA  L  +M++ G+ P+  TF  ++D             
Sbjct: 476 VPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHTFACLVDGFWKEGRLSVAID 535

Query: 333 -----------------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
                                  LC+NG +  ASR    M   G+ P+  ++ +++ G  
Sbjct: 536 FYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMRSCGITPDICSYVSMLKGHL 595

Query: 370 LTGRV 374
              R+
Sbjct: 596 QEKRI 600



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/254 (24%), Positives = 121/254 (47%), Gaps = 7/254 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M N R  P   T  +L+ G   K  + +  L L   + ++G+ P++ T++ L
Sbjct: 392 EANRLFQKMKNERIFPSSATYNSLIHG-YCKEYNMEQALDLCSEMTASGVEPNIITFSTL 450

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C +  +     +   +      PD V +T+LI     E+ + EA  L++ +   G 
Sbjct: 451 IDGYCNVRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGI 510

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN  T++ L++G  + G   VA++ ++E       +      N V +T +I+GLC+ G+
Sbjct: 511 HPNDHTFACLVDGFWKEGRLSVAIDFYQENNQQRSCW------NHVGFTCLIEGLCQNGY 564

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A   F  M+   I PD+ +Y S++ G        +   L  +M+  G+ P+++   +
Sbjct: 565 ILRASRFFSDMRSCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQL 624

Query: 329 IMDELCKNGKMDEA 342
           +      NG +  A
Sbjct: 625 LARFYQANGYVKSA 638



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 124/302 (41%), Gaps = 29/302 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L     K+ +    + L   + S  L PD++TY ILIN  C   +V+    +
Sbjct: 337 PNLYVYNCLIHGHCKSGNMLEAVGLLSEMESLNLSPDVFTYTILINGLCIEDQVAEANRL 396

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      P +  + SLI G C E  + +A  L +++ A G +PN+IT+STLI+G C 
Sbjct: 397 FQKMKNERIFPSSATYNSLIHGYCKEYNMEQALDLCSEMTASGVEPNIITFSTLIDGYCN 456

Query: 225 TGHTIVALNLFEEMA--------------------NGNGKFGVV---------CKPNTVT 255
                 A+ L+ EM                       N K  +            PN  T
Sbjct: 457 VRDIKAAMGLYFEMTIKGIVPDVVTYTALIDAHFKEANMKEALRLYSDMLEAGIHPNDHT 516

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           +  ++DG  KEG +  A + + +   +    + V +  LI G C       A+    +M 
Sbjct: 517 FACLVDGFWKEGRLSVAIDFYQENNQQRSCWNHVGFTCLIEGLCQNGYILRASRFFSDMR 576

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G+ PD+ ++  ++    +  ++ +   L   MI  G+ PN      L   +   G V 
Sbjct: 577 SCGITPDICSYVSMLKGHLQEKRITDTMMLQCDMIKTGILPNLLVNQLLARFYQANGYVK 636

Query: 376 HA 377
            A
Sbjct: 637 SA 638


>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
 gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
          Length = 658

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 94  FDYM----LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           +DY+    +NM  SP  L SFNL+   L K    D  + +F+ +      PD YTY  L+
Sbjct: 171 YDYVVNSNMNMNISPNGL-SFNLVIKALCKLGFVDRAIEVFRGMPEKKCLPDGYTYCTLM 229

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK  R+    ++L  +     +P  V +  LI GLC +  +     L   +   GC 
Sbjct: 230 DGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCF 289

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN +TY+TLI+GLC  G    A++L E M +        C PN VTY T+I+GL K+   
Sbjct: 290 PNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK------CIPNDVTYGTLINGLVKQRRA 343

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
                L + M+++    +   Y+ LI G        EA  L  +M ++G +P++V ++ +
Sbjct: 344 MDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAV 403

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D LC+ GK +EA  +L  MI  G  PN  T+S+LM GF  TG    A +++  M+  GC
Sbjct: 404 IDGLCREGKPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGC 463

Query: 390 KHTVFSY 396
               F Y
Sbjct: 464 SRNEFCY 470



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 170/344 (49%), Gaps = 14/344 (4%)

Query: 57  RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           R+ +++R  +E+      ++ G+  +    P +A  +F  M++       + SFN +   
Sbjct: 102 RIRLENRVIIERSFIVVFRAYGKAHL----PEKAVDLFHRMVDEFRCKRSVKSFNSVLNV 157

Query: 117 LAKTKHYDTVLSLFKRLNSTGL----FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           +     Y   L  +  + ++ +     P+  ++N++I   CK+G V     V   +    
Sbjct: 158 IINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLGFVDRAIEVFRGMPEKK 217

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD   + +L+ GLC E RI EA  L  ++++ GC P+ + Y+ LI+GLC+ G      
Sbjct: 218 CLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVT 277

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L + M      F   C PN VTY T+I GLC +G +DKA  L  +M      P+ VTY 
Sbjct: 278 KLVDNM------FLKGCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYG 331

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI+G        +   LLI M ++G + +   ++V++  L K GK +EA  L + M  +
Sbjct: 332 TLINGLVKQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEK 391

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G  PN   +S ++DG C  G+ N AKE+   M S GC   V++Y
Sbjct: 392 GCRPNIVVYSAVIDGLCREGKPNEAKEILNGMISSGCLPNVYTY 435



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/297 (32%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M +   SP P+  +N+L   L K      V  L   +   G FP+  TYN 
Sbjct: 239 DEAVLLLDEMQSEGCSPSPVI-YNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNEVTYNT 297

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  G++     +L R++ S   P+ V + +LI GL  + R M+ A L   ++  G
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRAMDGARLLISMEERG 357

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N   YS LI+GL + G    A+ L+++MA         C+PN V Y+ +IDGLC+EG
Sbjct: 358 YRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKG------CRPNIVVYSAVIDGLCREG 411

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++AKE+   M      P+V TY+SL+ GF       EA  +  EM + G   +   ++
Sbjct: 412 KPNEAKEILNGMISSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYS 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           V++D LC  G++ EA  +   M+  G+ P+T  +S+++ G C  G ++ A +L+  M
Sbjct: 472 VLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEM 528



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 151/292 (51%), Gaps = 30/292 (10%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +++L   L K    +  ++L+K++   G  P++  Y+ +I+  C+ G+ +    +L  ++
Sbjct: 365 YSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMI 424

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S   P+   ++SL+KG        EA  ++ ++   GC  N   YS LI+GLC  G   
Sbjct: 425 SSGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVK 484

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---KDKNINP 286
            A+ ++ +M        +  KP+TV Y+++I GLC  G +D A +L+ +M   ++    P
Sbjct: 485 EAMMVWSKM------LTIGIKPDTVAYSSMIKGLCGIGSMDAALKLYHEMLCQEEPKSQP 538

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL------CKNGK-- 338
           DVVTYN L+ G C   D + A  LL  M+D+G  PDV+T N  ++ L      C+ G+  
Sbjct: 539 DVVTYNILLDGLCMQKDVSRAVDLLNCMLDRGCDPDVITCNTFLNTLSEKSDSCEEGRSF 598

Query: 339 MDE-------------ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++E             A +++E+M+ + + P TST++ ++   C   ++N A
Sbjct: 599 LEELVARLLKRQRVSGACKIVEVMLGKYLAPKTSTWAMIVPEICKPKKINAA 650


>gi|38344241|emb|CAE02059.2| OJ991113_30.18 [Oryza sativa Japonica Group]
          Length = 736

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 152/302 (50%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   G+ PD+YTY ILI+ FCK G +     +
Sbjct: 221 PDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWL 280

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     +P  V +T+LI       ++ +A  +F ++   GC+PN +TY  L++GLC+
Sbjct: 281 FEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCK 340

Query: 225 TGHTIVALNLFEEMA----NGNGKFGVVCK------PNTVTYTTIIDGLCKEGFVDKAKE 274
            G+   A  ++ ++     + +  F   C+      PN VTY  ++DGLCK   VD A E
Sbjct: 341 AGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHE 400

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y++LI GFC A   + A  + ++M   G  P V T+  ++D + 
Sbjct: 401 LLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMF 460

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+G++D A ++L  M+     PN  T++ ++DG C  G    A +L   ME  GC   V 
Sbjct: 461 KDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVV 520

Query: 395 SY 396
           +Y
Sbjct: 521 TY 522



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/329 (30%), Positives = 160/329 (48%), Gaps = 23/329 (6%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A    +AF +F  M  M    P + ++ +L     K    +    LF+ + S G  P + 
Sbjct: 236 ATKVEKAFLLFQEM-KMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVV 294

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY  LI+ + K  +V     +  R++ +   P+ V + +L+ GLC    I +A  ++ KL
Sbjct: 295 TYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKL 354

Query: 204 KA----------FGCK------PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
                       F C+      PNV+TY  L++GLC+      A  L + M +       
Sbjct: 355 IGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSG----- 409

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C+PN + Y  +IDG CK G +D A+E+FLQM      P V TY SLI         + A
Sbjct: 410 -CEPNHIVYDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLA 468

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L +M+     P+VVT+  ++D LC+ G+ ++A +LL LM  +G +PN  T++ L+DG
Sbjct: 469 MKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKGCSPNVVTYTALIDG 528

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               G+++ + +LF  M   GC     +Y
Sbjct: 529 LGKAGKIDLSLDLFTQMSRKGCSPNYVTY 557



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           CL     +D    L K +   G  PD  TY+ +I   C   +V   F++   +     TP
Sbjct: 197 CLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMKMVGVTP 256

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   +T LI   C    I +A  LF ++++ GC P V+TY+ LI+   +      A ++F
Sbjct: 257 DVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQVPQANDIF 316

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---------------K 280
             M +        C+PN VTY  ++DGLCK G + KA E++ ++               +
Sbjct: 317 HRMVDAG------CRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCE 370

Query: 281 DKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           D++ + P+VVTY +L+ G C A+  + A+ LL  M+  G +P+ + ++ ++D  CK GK+
Sbjct: 371 DRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKI 430

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D A  +   M   G  P+  T+++L+D     GR++ A ++   M    C   V +Y
Sbjct: 431 DSAQEVFLQMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTY 487



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 156/315 (49%), Gaps = 23/315 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+ M ++  SP  +T   L+   L K K       +F R+   G  P+  TY  
Sbjct: 275 EQAQWLFEEMRSVGCSPTVVTYTALIHAYL-KAKQVPQANDIFHRMVDAGCRPNDVTYGA 333

Query: 148 LINCFCKMGRVSHGFVVLGRIL----------------RSCFTPDAVAFTSLIKGLCAES 191
           L++  CK G +S  F V  +++                R    P+ V + +L+ GLC   
Sbjct: 334 LVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFPCEDRHTLAPNVVTYGALVDGLCKAH 393

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++  A  L   + + GC+PN I Y  LI+G C+ G    A  +F +M     K G +  P
Sbjct: 394 KVDHAHELLDAMLSSGCEPNHIVYDALIDGFCKAGKIDSAQEVFLQMT----KCGYL--P 447

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  TYT++ID + K+G +D A ++  QM   +  P+VVTY ++I G C   +  +A  LL
Sbjct: 448 SVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLL 507

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M ++G  P+VVT+  ++D L K GK+D +  L   M  +G +PN  T+  L++  C  
Sbjct: 508 SLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCAA 567

Query: 372 GRVNHAKELFVSMES 386
           G ++ A+ L   M+ 
Sbjct: 568 GLLDKARLLLGEMKQ 582



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 42/328 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  + D ML+    P  +  ++ L     K    D+   +F ++   G  P ++TY  
Sbjct: 396 DHAHELLDAMLSSGCEPNHIV-YDALIDGFCKAGKIDSAQEVFLQMTKCGYLPSVHTYTS 454

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K GR+     VL ++L+   TP+ V +T++I GLC      +A  L + ++  G
Sbjct: 455 LIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKLLSLMEEKG 514

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+ LI+GL + G   ++L+LF +M+         C PN VTY  +I+ LC  G
Sbjct: 515 CSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKG------CSPNYVTYRVLINHLCAAG 568

Query: 268 FVDKAKELFLQMKDK---------------------------------NINPDVVTYNSL 294
            +DKA+ L  +MK                                      P    Y  L
Sbjct: 569 LLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMESYGTVPIAPVYGML 628

Query: 295 IHGFCYANDWNEANCLLIEMMD--QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           I  F  A     A  L  EMM+    V+ D   +  ++  LC   +++EA RL   M  R
Sbjct: 629 IDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFRLYSEMTRR 688

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           G  P  S F  L+ G     + + A +L
Sbjct: 689 GFVPELSVFVCLIKGLVEVKKWDEALQL 716



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/349 (25%), Positives = 148/349 (42%), Gaps = 65/349 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K K       +   + + G  P+   +N L++ +C     ++ + +
Sbjct: 75  PNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNSLVHSYCNEKDYAYAYKL 134

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRI----------------MEAAALFTKL----- 203
           L R+      P  V +   I  +C + ++                + A  +  K+     
Sbjct: 135 LNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYGEMLAANCVLNKVNVANF 194

Query: 204 -----------KAF---------GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
                      KAF         G  P+  TYS +I  LC       A  LF+EM     
Sbjct: 195 ARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHATKVEKAFLLFQEMK---- 250

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
             GV   P+  TYT +ID  CK G +++A+ LF +M+    +P VVTY +LIH +  A  
Sbjct: 251 MVGVT--PDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTYTALIHAYLKAKQ 308

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI------------- 350
             +AN +   M+D G +P+ VT+  ++D LCK G + +A  +   +I             
Sbjct: 309 VPQANDIFHRMVDAGCRPNDVTYGALVDGLCKAGNISKAFEVYAKLIGTSDSADSDFYFP 368

Query: 351 ---LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK--HTVF 394
                 + PN  T+  L+DG C   +V+HA EL  +M S GC+  H V+
Sbjct: 369 CEDRHTLAPNVVTYGALVDGLCKAHKVDHAHELLDAMLSSGCEPNHIVY 417



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 124/286 (43%), Gaps = 12/286 (4%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +  ++D  +S   R+      P++ TY  L++ F K  ++     ++  ++     P+
Sbjct: 52  LMEASYFDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPN 111

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI------V 230
              F SL+   C E     A  L  ++   GC P  + Y+  I  +C            +
Sbjct: 112 PSLFNSLVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDL 171

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  ++ EM   N      C  N V        LC  G  DKA +L  +M  K   PD  T
Sbjct: 172 AEKIYGEMLAAN------CVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTST 225

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y+ +I   C+A    +A  L  EM   GV PDV T+ +++D  CK G +++A  L E M 
Sbjct: 226 YSKVITFLCHATKVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMR 285

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +P   T++ L+  +    +V  A ++F  M   GC+    +Y
Sbjct: 286 SVGCSPTVVTYTALIHAYLKAKQVPQANDIFHRMVDAGCRPNDVTY 331



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/299 (26%), Positives = 131/299 (43%), Gaps = 38/299 (12%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           ++ +G   D +T     +  CK GR +     L  I R  F  D V  T +I GL   S 
Sbjct: 1   MSESGFCMDRFTVGCFAHALCKEGRWADA---LDMIEREDFKLDTVLCTHMISGLMEASY 57

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH-----TIVAL----------NLFEE 237
             EA +   +++   C PNV+TY TL++G  +         I+ +          +LF  
Sbjct: 58  FDEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQLGWCKRIINMMMTEGCNPNPSLFNS 117

Query: 238 MANG--------------NGKFGVVCKPNTVTYTTIIDGLCKE------GFVDKAKELFL 277
           + +               N      C P  V Y   I  +C +        +D A++++ 
Sbjct: 118 LVHSYCNEKDYAYAYKLLNRMTTCGCPPGYVVYNIFIGSICGQEKLPSPDLLDLAEKIYG 177

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M   N   + V   +     C    +++A  L+ EMM +G  PD  T++ ++  LC   
Sbjct: 178 EMLAANCVLNKVNVANFARCLCGVGKFDKAFQLIKEMMRKGFVPDTSTYSKVITFLCHAT 237

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+++A  L + M + GV P+  T++ L+D FC  G +  A+ LF  M S+GC  TV +Y
Sbjct: 238 KVEKAFLLFQEMKMVGVTPDVYTYTILIDSFCKAGLIEQAQWLFEEMRSVGCSPTVVTY 296



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 120/286 (41%), Gaps = 41/286 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K    D  + +  ++      P++ TY  +I+  C++G       +
Sbjct: 447 PSVHTYTSLIDRMFKDGRLDLAMKVLSQMLKDSCTPNVVTYTAMIDGLCRIGESEKALKL 506

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     +P+ V +T+LI GL    +I  +  LFT++   GC PN +TY  LIN LC 
Sbjct: 507 LSLMEEKGCSPNVVTYTALIDGLGKAGKIDLSLDLFTQMSRKGCSPNYVTYRVLINHLCA 566

Query: 225 TG---------------------------------HTIVALNLFEEMANGNGKFGVVCKP 251
            G                                   I +L + EEM +    +G V  P
Sbjct: 567 AGLLDKARLLLGEMKQTYWPKYLQGYRCAIQGFSKSFIASLGILEEMES----YGTV--P 620

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKD--KNINPDVVTYNSLIHGFCYANDWNEANC 309
               Y  +ID   K G ++ A EL  +M +   ++  D   Y SLI   C A+   EA  
Sbjct: 621 IAPVYGMLIDCFSKAGRLEIAMELHKEMMEVPSSVKTDNDMYASLIQALCLASQVEEAFR 680

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           L  EM  +G  P++  F  ++  L +  K DEA +L   +   GVN
Sbjct: 681 LYSEMTRRGFVPELSVFVCLIKGLVEVKKWDEALQLCYGICHEGVN 726


>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 472

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 157/316 (49%), Gaps = 19/316 (6%)

Query: 85  ITPNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPD 141
           +  N+    F +  NMR    PP + S N+L   L +     D  L +F  +   G  PD
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPD 191

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
            YTY  LI+  C+ GR+     +   ++     P  V +TSLI GLC    + EA     
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVE 251

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE-EMANGNGKFGVVCKPNTVTYTTII 260
           ++K  G +PNV TYS+L++GLC+ G ++ A+ LFE  MA G       C+PN VTYTT+I
Sbjct: 252 EMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG-------CRPNMVTYTTLI 304

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLCKE  + +A EL  +M  + + PD   Y  +I GFC  + + EA   L EM+  G+ 
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGIT 364

Query: 321 PDVVTFNV-------IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           P+ +T+N+       ++  LC N     A  L   M  RG++    T  +L+   C  G 
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCTNYP-SRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGE 423

Query: 374 VNHAKELFVSMESMGC 389
              A +L   + + GC
Sbjct: 424 FQKAVQLVDEIVTDGC 439



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/340 (30%), Positives = 166/340 (48%), Gaps = 20/340 (5%)

Query: 57  RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           R+ +++    E  L   C+  G+       P ++  +F  M +     P   ++  +   
Sbjct: 76  RMKIENCVVSEDILLSICRGYGR----VHRPFDSLRVFHKMKDF-DCDPSQKAYVTVLAI 130

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-GRVSHGFVVLGRILRSCFTP 175
           L +    +     +K +   GL P + + N+LI   C+  G V  G  +   + +    P
Sbjct: 131 LVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDP 190

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D+  + +LI GLC   RI EA  LFT++    C P V+TY++LINGLC + +   A+   
Sbjct: 191 DSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYV 250

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           EEM  G G      +PN  TY++++DGLCK+G   +A ELF  M  +   P++VTY +LI
Sbjct: 251 EEM-KGKG-----IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLI 304

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            G C      EA  LL  M  QG++PD   +  ++   C   K  EA+  L+ MIL G+ 
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAVSKFREAANFLDEMILGGIT 364

Query: 356 PNTSTF-------STLMDGFCLTGRVNHAKELFVSMESMG 388
           PN  T+       + ++ G C T   + A  L++SM S G
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLC-TNYPSRAFTLYLSMRSRG 403



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 79/217 (36%), Positives = 125/217 (57%), Gaps = 7/217 (3%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA-LN 233
           P   A+ +++  L  E+++  A   +  ++  G  P V + + LI  LCR   T+ A L 
Sbjct: 119 PSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLK 178

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +F EM          C P++ TY T+I GLC+ G +D+AK+LF +M +K+  P VVTY S
Sbjct: 179 IFHEMPKRG------CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C + + +EA   + EM  +G++P+V T++ +MD LCK+G+  +A  L E+M+ RG
Sbjct: 233 LINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG 292

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             PN  T++TL+ G C   ++  A EL   M   G K
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLK 329



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 128/264 (48%), Gaps = 9/264 (3%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI-LRSCFTPDAVAFTSLIKGLCAESRI 193
           + G   D  ++  +++      +      ++ R+ + +C   + +   S+ +G     R 
Sbjct: 44  ANGYLHDQSSFGYMVSRLVSANKFKAAEDIVARMKIENCVVSEDI-LLSICRGYGRVHRP 102

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            ++  +F K+K F C P+   Y T++  L       +A   ++ M        +   P  
Sbjct: 103 FDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMRE------IGLPPTV 156

Query: 254 VTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            +   +I  LC+ +G VD   ++F +M  +  +PD  TY +LI G C     +EA  L  
Sbjct: 157 ASLNVLIKALCRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFT 216

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM+++   P VVT+  +++ LC +  +DEA R +E M  +G+ PN  T+S+LMDG C  G
Sbjct: 217 EMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYVEEMKGKGIEPNVFTYSSLMDGLCKDG 276

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           R   A ELF  M + GC+  + +Y
Sbjct: 277 RSLQAMELFEMMMARGCRPNMVTY 300



 Score =  108 bits (269), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 72/263 (27%), Positives = 130/263 (49%), Gaps = 15/263 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M+    +P  +T  +L+ G L  +K+ D  +   + +   G+ P+++TY+ 
Sbjct: 209 DEAKKLFTEMVEKDCAPTVVTYTSLING-LCGSKNVDEAMRYVEEMKGKGIEPNVFTYSS 267

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR      +   ++     P+ V +T+LI GLC E +I EA  L  ++   G
Sbjct: 268 LMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQG 327

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT-------TII 260
            KP+   Y  +I+G C       A N  +EM  G    G+   PN +T+         ++
Sbjct: 328 LKPDAGLYGKVISGFCAVSKFREAANFLDEMILG----GIT--PNRLTWNIHVKTSNEVV 381

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC   +  +A  L+L M+ + I+ +V T +SL+   C   ++ +A  L+ E++  G  
Sbjct: 382 RGLCT-NYPSRAFTLYLSMRSRGISVEVETLDSLVKCLCKKGEFQKAVQLVDEIVTDGCI 440

Query: 321 PDVVTFNVIMDELCKNGKMDEAS 343
           P+  T+ +++     N  + EAS
Sbjct: 441 PNKGTWKLLIGHTLDNTIVGEAS 463


>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
 gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
          Length = 556

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 101/332 (30%), Positives = 164/332 (49%), Gaps = 56/332 (16%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  FN L   L K  + D  + LF+ + S+ + PD++TYN +I+  CK G +     +
Sbjct: 95  PDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKAREL 154

Query: 165 LGRILRSC--FTPDAVAFTSLIK-GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           L  ++R      PD V + +LI  G+C +  + EA  +   +K  G  P+VITY+++I+ 
Sbjct: 155 LEEMIRRGGKSAPDIVTYNTLINAGICKDGDVEEALEILDGMKLAGPAPDVITYNSIIHA 214

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC  G  + A  + + M+         C P+ VT+ T++DG CK G + +A E+  +M  
Sbjct: 215 LCVAGRVVEAAEILKTMS---------CSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCR 265

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           +NI PDV+TY  L++G C       A  LL E++ QG  PDV+ +  ++D LCK+G+++E
Sbjct: 266 ENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSLVDGLCKSGEIEE 325

Query: 342 ASRLLELM--------------------------------------------ILRGVNPN 357
           A +L++ M                                            + RG  P+
Sbjct: 326 AHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPD 385

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             T++TL+DG C   RV  A +L   M S+GC
Sbjct: 386 VVTYNTLIDGLCKANRVREACDLADEMASLGC 417



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/311 (33%), Positives = 156/311 (50%), Gaps = 8/311 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+ A   FD+          + S+N L   L K+ H      ++K L  +G  P+L T+ 
Sbjct: 7   PDLAIQFFDWAGEQDGYKHDVHSYNHLLDILVKSGHQFRTGKVYKDLLHSGCSPNLVTFK 66

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI   CK G+ +     L  +      PD   F  LI GL  +    +A  LF  +++ 
Sbjct: 67  ILIRGNCKAGQATRALEFLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESS 126

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID-GLCK 265
              P++ TY+T+I+GLC++G+   A  L EEM    GK      P+ VTY T+I+ G+CK
Sbjct: 127 RVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGK----SAPDIVTYNTLINAGICK 182

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G V++A E+   MK     PDV+TYNS+IH  C A    EA  +L  M      PD+VT
Sbjct: 183 DGDVEEALEILDGMKLAGPAPDVITYNSIIHALCVAGRVVEAAEILKTM---SCSPDLVT 239

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++D  CK G +  A  +LE M    + P+  T++ L++G C  G+V  A  L   + 
Sbjct: 240 FNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIV 299

Query: 386 SMGCKHTVFSY 396
             G    V +Y
Sbjct: 300 RQGYIPDVIAY 310



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 155/312 (49%), Gaps = 7/312 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I D M    P+P  +T +N +   L           + K ++ +   PDL T+N 
Sbjct: 187 EEALEILDGMKLAGPAPDVIT-YNSIIHALCVAGRVVEAAEILKTMSCS---PDLVTFNT 242

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK G +     VL  + R    PD + +T L+ GLC   ++  A  L  ++   G
Sbjct: 243 LLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQG 302

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC---KPNTVTYTTIIDGLC 264
             P+VI Y++L++GLC++G    A  L +EM+       +V     P   TY  ++ GL 
Sbjct: 303 YIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTYNIVLGGLI 362

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K+G + KA  L   +  +   PDVVTYN+LI G C AN   EA  L  EM   G  P+ V
Sbjct: 363 KDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDV 422

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T   ++  LC+ G++D+A  L+  M  +   PN   +++L+DG C + R++ A  +  +M
Sbjct: 423 TLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCKSDRMDDACVVLDAM 482

Query: 385 ESMGCKHTVFSY 396
              G     F+Y
Sbjct: 483 RGQGVALDDFAY 494



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 50/304 (16%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN L     K       L + + +    + PD+ TY IL+N  C++G+V   F +
Sbjct: 235 PDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYL 294

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA---------------------------- 196
           L  I+R  + PD +A+TSL+ GLC    I EA                            
Sbjct: 295 LEEIVRQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEMVSINMVPPLFTY 354

Query: 197 ----------------AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
                            +L + L A G  P+V+TY+TLI+GLC+      A +L +EMA+
Sbjct: 355 NIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVREACDLADEMAS 414

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                 + C PN VT  +++ GLC+ G VD A  L ++M  K   P+VV Y SLI G C 
Sbjct: 415 ------LGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHAPNVVVYTSLIDGLCK 468

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           ++  ++A  +L  M  QGV  D   +  ++  +   G++ EA  + + M+ RG  P+ ST
Sbjct: 469 SDRMDDACVVLDAMRGQGVALDDFAYRKLIVSMIHGGRVAEAMAMYDEMVARGFLPDGST 528

Query: 361 FSTL 364
             TL
Sbjct: 529 SKTL 532


>gi|255660808|gb|ACU25573.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 418

 Score =  171 bits (434), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L  EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLTDEMSMKGLKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNXMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 HLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNXMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLTDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C       A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGHLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 918

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ +F  M N +   P + ++  L   L  +      + LF R++  G+FP+  TYN L
Sbjct: 338 DAWRLFVDMKN-KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   +  R+ + FVVL  + R+  +P+ V +  +IKG C      +A  +   +   G 
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N++TY+T+I G C +G+T  AL + + M +G       CKP+  +YT +I G CK   
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISK 510

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A  LF +M D  + P+ VTY +LI G+C     + A  LL  M   G +P+V T+NV
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K      A  L ++MI  G+ PN  T++ ++DG C  G  + A E+F  M   G
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 389 CKHTVFSY 396
           C   + +Y
Sbjct: 631 CLPNLLTY 638



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L +++ L   L++      V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ 
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++  S  +PD   +TS+I G C +  +  A  +F ++   GC+PN +TYSTLINGLC +G
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A +L  EM       G++  P   T T  I  LC  G  + A  LF+ MK+K   P
Sbjct: 300 RVNEAFDLIREMI----LHGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G C +     A  L   M   GV P+ VT+N +++ L +N ++  A  +L
Sbjct: 354 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM   G +PN  T++ ++ G+C+ G    A  +  +M   G    + +Y
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTY 463



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 7/282 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  + + ML  R     L ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 441 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI  FCK+ ++   F +   ++     P+ V +T+LI G C + ++  A +L   +K  
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC+PNV TY+ LI+GL +  +   A  L + M    G F     PN VTYT +IDGLCK 
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE-EGIF-----PNVVTYTAMIDGLCKN 613

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A E+F +M ++   P+++TY+SLI          EA  L  E+   G+ PD +T+
Sbjct: 614 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITY 673

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +++    +GK++ A   L  MI  G  P   T+  L+ G 
Sbjct: 674 VKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 155/356 (43%), Gaps = 64/356 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L K  +     ++ K++  + + PD +TY  +I   C+   +     V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIME----------------------------- 195
             ++ +    P+ V +++LI GLC   R+ E                             
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 196 ------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------- 239
                 A  LF  +K  GC+PNV TY+ LI+GLC +G   VA+ LF  M+          
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVT 392

Query: 240 ----------NGNGKFGVV---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                     N   K+  V         C PN VTY  +I G C  G   KA  +   M 
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            +  + ++VTYN++I G+C + +   A  +L  M D G +PD  ++  ++   CK  KM+
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  L   M+  G+ PN  T++ L+DG+C   +++ A  L   M+  GC+  V +Y
Sbjct: 513 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIK   ++  +    +    L   G +  +  YS L+  L R G T   ++ +  M +  
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE- 209

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              GV  +PN + Y  +I+ LCK+G V  A+ +  ++ +  ++PD  TY S+I G C  +
Sbjct: 210 ---GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 264

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D + A  +  +M  +G +P+ VT++ +++ LC +G+++EA  L+  MIL G+ P   T +
Sbjct: 265 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 324

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   C  G    A  LFV M++ GC+  V++Y
Sbjct: 325 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ + ++SLI+ L  E ++ EA  LF +L+  G  P+ ITY  +I     
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL--------------------C 264
           +G    A N    M          C+P   TY  +I GL                    C
Sbjct: 683 SGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNC 736

Query: 265 KEGF--VDKAKELFLQMKDKNINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
             G+   D+     +  K   ++P   V   N+L+     A  W EAN LL  M+ QG+ 
Sbjct: 737 SFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLC 796

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD   +N ++  L +   +D A  + + M  +G   + + +  L+   C   R   A+  
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 381 FVSM 384
           F +M
Sbjct: 857 FENM 860



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 90/253 (35%), Gaps = 65/253 (25%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L +    +   +LF  L   GL PD  TY  +I  +   G+V H F  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 165 LGRILRSCFTP------------------------------------------DAVAFTS 182
           LGR++++   P                                          DAV+  S
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMS 752

Query: 183 -----------------LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
                            L+  L    R  EA  L   + + G  P+   Y++L+  L R 
Sbjct: 753 AKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRV 812

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            +  +A+ +F+ M+         C+ +   Y  +I  LC+     +A+  F  M  +  N
Sbjct: 813 RNVDLAMGVFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWN 866

Query: 286 PDVVTYNSLIHGF 298
           PD V    LI G 
Sbjct: 867 PDDVVQAVLIDGL 879



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           + + D  L   P   P  SF        +T   D V  +  +L        +   N L++
Sbjct: 719 YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
                GR      +LG ++     PD  A+ SL+  L     +  A  +F  +   GC+ 
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           ++  Y  LI  LC+      A   FE M            P+ V    +IDGL ++G+ D
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 271 KAKELFLQMKDKNINPDVVTYNSL 294
              E    M+ +   P    Y  L
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTIL 910


>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 584

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 90/257 (35%), Positives = 140/257 (54%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN LI+ F K  ++ +   VL R+    F PD V +  +I   C+  ++  A  +
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEI 195

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F +L    C+P VITY+ LI      G   VA+ L +EM +         +P+T+TY  I
Sbjct: 196 FEELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKG------LEPDTLTYNAI 249

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G+CKE  VDKA EL   +  +   PD++TYN L+        W+E   L+ EM+  G 
Sbjct: 250 IRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGC 309

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P+VVT ++++  LC++GK++EA  LL  M  +G+ P+   +  L+ GFC  GR++ A E
Sbjct: 310 KPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATE 369

Query: 380 LFVSMESMGCKHTVFSY 396
               M S GC   + +Y
Sbjct: 370 FLEYMISDGCLPDIVNY 386



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 100/337 (29%), Positives = 165/337 (48%), Gaps = 14/337 (4%)

Query: 67  EQFLKERCKSSG-------QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           E+ LK+ C+ +        +  I     + A  + D ML+    P  LT +N +   + K
Sbjct: 197 EELLKDNCEPTVITYTILIEATILDGGIDVAMKLLDEMLSKGLEPDTLT-YNAIIRGMCK 255

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
               D    L + L+S G  PD+ TYNIL+      G+ S G  ++  ++     P+ V 
Sbjct: 256 EMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVT 315

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            + LI  LC + ++ EA  L   +K  G KP+   Y  LI G CR G   +A    E M 
Sbjct: 316 HSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMI 375

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           +        C P+ V Y TI+ GLC+ G  D+A E+F ++ +    P+V +YN+L     
Sbjct: 376 SDG------CLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALW 429

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            + D   A  +++++++QG+ PD +T+N ++  LC++G +DEA  LL  M      PN  
Sbjct: 430 SSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVV 489

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++ ++ G C   R N A E+  +M   GC+    +Y
Sbjct: 490 SYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTY 526



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L+ R   P + ++N+L   L     +     L   + S G  P++ T++ILI   C+ G+
Sbjct: 269 LSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMISIGCKPNVVTHSILIGTLCRDGK 328

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     +L  +      PDA  +  LI G C E R+  A      + + GC P+++ Y+T
Sbjct: 329 VEEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNT 388

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++ GLCRTG    AL +FE++        V C PN  +Y T+   L   G   +A E+ L
Sbjct: 389 IMAGLCRTGKADQALEVFEKLDE------VGCPPNVSSYNTLFSALWSSGDRYRALEMIL 442

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           ++ ++ I+PD +TYNSLI   C     +EA  LL++M     +P+VV++N+I+  LCK  
Sbjct: 443 KLLNQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVN 502

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           + ++A  +L  M  +G  PN +T+  L++G   +G    A EL  S+  M
Sbjct: 503 RANDAIEVLAAMTEKGCQPNETTYILLIEGIGFSGLRAEAMELANSLHGM 552



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 142/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N++ G        D  L +F+ L      P + TY ILI      G +     +
Sbjct: 171 PDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYTILIEATILDGGIDVAMKL 230

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     PD + + ++I+G+C E  + +A  L   L + GCKP++ITY+ L+  L  
Sbjct: 231 LDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLS 290

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G       L  EM        + CKPN VT++ +I  LC++G V++A  L   MK+K +
Sbjct: 291 RGKWSEGEKLISEM------ISIGCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGL 344

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   Y+ LI GFC     + A   L  M+  G  PD+V +N IM  LC+ GK D+A  
Sbjct: 345 KPDAYCYDPLIAGFCREGRLDLATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALE 404

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + E +   G  PN S+++TL      +G    A E+ + + + G      +Y
Sbjct: 405 VFEKLDEVGCPPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITY 456



 Score =  100 bits (250), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 110/249 (44%), Gaps = 42/249 (16%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  C+ G+ +     L  ++   +TPD +  T LIKG      I +A  +   L+ +G
Sbjct: 75  LLNRSCRAGKYNESLYFLECMVDKGYTPDVILCTKLIKGFFNSRNIGKATRVMEILERYG 134

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
                                                     KP+   Y  +I G  K  
Sbjct: 135 ------------------------------------------KPDVFAYNALISGFIKAN 152

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  +  +MK +   PDVVTYN +I  FC     + A  +  E++    +P V+T+ 
Sbjct: 153 QLENANRVLDRMKSRGFLPDVVTYNIMIGSFCSRGKLDLALEIFEELLKDNCEPTVITYT 212

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++    +G +D A +LL+ M+ +G+ P+T T++ ++ G C    V+ A EL  S+ S 
Sbjct: 213 ILIEATILDGGIDVAMKLLDEMLSKGLEPDTLTYNAIIRGMCKEMMVDKAFELLRSLSSR 272

Query: 388 GCKHTVFSY 396
           GCK  + +Y
Sbjct: 273 GCKPDIITY 281



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 69/140 (49%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP ++S+N LF  L  +      L +  +L + G+ PD  TYN LI+C C+ G V     
Sbjct: 415 PPNVSSYNTLFSALWSSGDRYRALEMILKLLNQGIDPDEITYNSLISCLCRDGMVDEAIE 474

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +    + P+ V++  ++ GLC  +R  +A  +   +   GC+PN  TY  LI G+ 
Sbjct: 475 LLVDMQSGRYRPNVVSYNIILLGLCKVNRANDAIEVLAAMTEKGCQPNETTYILLIEGIG 534

Query: 224 RTGHTIVALNLFEEMANGNG 243
            +G    A+ L   +   N 
Sbjct: 535 FSGLRAEAMELANSLHGMNA 554


>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 716

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 100/308 (32%), Positives = 158/308 (51%), Gaps = 7/308 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF + D M   +   P L ++N L   L K   Y+    +   +   GL P+  T+N 
Sbjct: 276 SEAFGLVDCMAG-KGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAATFNP 334

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C+   V     V   +L+    PD ++F+S++        +  A A F K+K  G
Sbjct: 335 MLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVG 394

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + Y+ LING CR      AL +  EM          C  + VTY T+++GLC+  
Sbjct: 395 LVPDTVIYTILINGYCRNDDVSGALKMRNEMVERG------CVMDVVTYNTLLNGLCRGK 448

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A ELF +M ++ + PD  T  +LIHG+C   +  +A  L   M  + ++PDVVT+N
Sbjct: 449 MLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTYN 508

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +MD  CK G+M++A  L   MI R + P+  +FS L++GFC  G V+ A  L+  M+  
Sbjct: 509 TLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEK 568

Query: 388 GCKHTVFS 395
           G K T+ +
Sbjct: 569 GIKPTLVT 576



 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/308 (33%), Positives = 163/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F+ ML  R   P L SF+ + G  ++       L+ F+++   GL PD   Y IL
Sbjct: 347 EAERVFNEMLQ-RGVVPDLISFSSIVGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTIL 405

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +C+   VS    +   ++      D V + +L+ GLC    + +A  LF ++   G 
Sbjct: 406 INGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGV 465

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+  T +TLI+G C+ G+   AL+LFE M   +       KP+ VTY T++DG CK G 
Sbjct: 466 FPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRS------LKPDVVTYNTLMDGFCKVGE 519

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KAKEL+  M  + I P  ++++ LI+GFC     +EA  L  EM ++G++P +VT N 
Sbjct: 520 MEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRLWDEMKEKGIKPTLVTCNT 579

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+    + G + +A+  L  MI  GV P+  T++TL++ F      + A  L  +ME  G
Sbjct: 580 IIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERG 639

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 640 LLPNLVTY 647



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/262 (31%), Positives = 140/262 (53%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L + K  D    LFK +   G+FPD YT   LI+ +CK G ++    +  
Sbjct: 434 VVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALSLFE 493

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      PD V + +L+ G C    + +A  L+  + +    P+ I++S LING C  G
Sbjct: 494 TMTLRSLKPDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLG 553

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L++EM           KP  VT  TII G  + G + KA +    M  + + P
Sbjct: 554 LVSEAFRLWDEMKEKG------IKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPP 607

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D +TYN+LI+ F    +++ A  L+  M ++G+ P++VT+N I+    ++G+M EA  +L
Sbjct: 608 DCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVL 667

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
             MI +G+NP+ ST+++L++G+
Sbjct: 668 HKMIDKGINPDKSTYTSLINGY 689



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 150/317 (47%), Gaps = 33/317 (10%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L G + K    D    +++    +G   ++YT NI++N  CK G++ +  V L  +  
Sbjct: 193 NALLGAIVKVGWVDLAWKVYEDFVKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEE 252

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                D V + +L+   C    + EA  L   +   G KP + TY+ LINGLC+ G    
Sbjct: 253 KGVYADLVTYNTLVNAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYER 312

Query: 231 ALNLFEEMA-------------------------------NGNGKFGVVCKPNTVTYTTI 259
           A  + +EM                                N   + GVV  P+ +++++I
Sbjct: 313 AKRVLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVV--PDLISFSSI 370

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +    + G + +A   F +MK   + PD V Y  LI+G+C  +D + A  +  EM+++G 
Sbjct: 371 VGVFSRNGELGRALAYFEKMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGC 430

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
             DVVT+N +++ LC+   +D+A  L + M+ RGV P+  T +TL+ G+C  G +  A  
Sbjct: 431 VMDVVTYNTLLNGLCRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGNMTKALS 490

Query: 380 LFVSMESMGCKHTVFSY 396
           LF +M     K  V +Y
Sbjct: 491 LFETMTLRSLKPDVVTY 507



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 77/287 (26%), Positives = 136/287 (47%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F+LL     + +        F+ L   G    +   N L+    K+G V   + V    +
Sbjct: 157 FDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDFV 216

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           +S    +      ++  LC + ++       ++++  G   +++TY+TL+N  CR G   
Sbjct: 217 KSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKGVYADLVTYNTLVNAYCRRGLVS 276

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L + MA G G      KP   TY  +I+GLCKEG  ++AK +  +M    + P+  
Sbjct: 277 EAFGLVDCMA-GKG-----LKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLCPNAA 330

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+N ++   C   D  EA  +  EM+ +GV PD+++F+ I+    +NG++  A    E M
Sbjct: 331 TFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAYFEKM 390

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G+ P+T  ++ L++G+C    V+ A ++   M   GC   V +Y
Sbjct: 391 KGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTY 437



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 12/248 (4%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            +++LI  + +  ++  G      + +  F     A  +L+  +     +  A  ++   
Sbjct: 156 VFDLLIRTYVQARKLREGSEAFQLLRKRGFCVSINACNALLGAIVKVGWVDLAWKVYEDF 215

Query: 204 KAFGCKPNVITYSTLINGLCRTG---HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
              G   NV T + ++N LC+ G   +  V L+  EE              + VTY T++
Sbjct: 216 VKSGNIVNVYTLNIMVNALCKDGKLDNVGVYLSEMEEKG---------VYADLVTYNTLV 266

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +  C+ G V +A  L   M  K + P + TYN+LI+G C    +  A  +L EM+  G+ 
Sbjct: 267 NAYCRRGLVSEAFGLVDCMAGKGLKPGLFTYNALINGLCKEGSYERAKRVLDEMLGVGLC 326

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+  TFN ++ E C+   + EA R+   M+ RGV P+  +FS+++  F   G +  A   
Sbjct: 327 PNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFSRNGELGRALAY 386

Query: 381 FVSMESMG 388
           F  M+ +G
Sbjct: 387 FEKMKGVG 394


>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
 gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
          Length = 918

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 160/308 (51%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ +F  M N +   P + ++  L   L  +      + LF R++  G+FP+  TYN L
Sbjct: 338 DAWRLFVDMKN-KGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNAL 396

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   +  R+ + FVVL  + R+  +P+ V +  +IKG C      +A  +   +   G 
Sbjct: 397 INILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGH 456

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N++TY+T+I G C +G+T  AL + + M +G       CKP+  +YT +I G CK   
Sbjct: 457 SANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKISK 510

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++ A  LF +M D  + P+ VTY +LI G+C     + A  LL  M   G +P+V T+NV
Sbjct: 511 MESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNV 570

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  L K      A  L ++MI  G+ PN  T++ ++DG C  G  + A E+F  M   G
Sbjct: 571 LIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 630

Query: 389 CKHTVFSY 396
           C   + +Y
Sbjct: 631 CLPNLLTY 638



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L +++ L   L++      V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ 
Sbjct: 180 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 239

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++  S  +PD   +TS+I G C +  +  A  +F ++   GC+PN +TYSTLINGLC +G
Sbjct: 240 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 299

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A +L  EM       G++  P   T T  I  LC  G  + A  LF+ MK+K   P
Sbjct: 300 RVNEAFDLIREMI----LHGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 353

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G C +     A  L   M   GV P+ VT+N +++ L +N ++  A  +L
Sbjct: 354 NVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 413

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM   G +PN  T++ ++ G+C+ G    A  +  +M   G    + +Y
Sbjct: 414 NLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTY 463



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 7/282 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  + + ML  R     L ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 441 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 499

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI  FCK+ ++   F +   ++     P+ V +T+LI G C + ++  A +L   +K  
Sbjct: 500 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 559

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC+PNV TY+ LI+GL +  +   A  L + M    G F     PN VTYT +IDGLCK 
Sbjct: 560 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE-EGIF-----PNVVTYTAMIDGLCKN 613

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A E+F +M ++   P+++TY+SLI          EA  L  E+   G+ PD +T+
Sbjct: 614 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITY 673

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +++    +GK++ A   L  MI  G  P   T+  L+ G 
Sbjct: 674 VKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 715



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 155/356 (43%), Gaps = 64/356 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L K  +     ++ K++  + + PD +TY  +I   C+   +     V
Sbjct: 213 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 272

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIME----------------------------- 195
             ++ +    P+ V +++LI GLC   R+ E                             
Sbjct: 273 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 332

Query: 196 ------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------- 239
                 A  LF  +K  GC+PNV TY+ LI+GLC +G   VA+ LF  M+          
Sbjct: 333 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFHRMSRDGVFPNTVT 392

Query: 240 ----------NGNGKFGVV---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                     N   K+  V         C PN VTY  +I G C  G   KA  +   M 
Sbjct: 393 YNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCILGDPKKAMLVMNNML 452

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            +  + ++VTYN++I G+C + +   A  +L  M D G +PD  ++  ++   CK  KM+
Sbjct: 453 QRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCKISKME 512

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A  L   M+  G+ PN  T++ L+DG+C   +++ A  L   M+  GC+  V +Y
Sbjct: 513 SAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTY 568



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIK   ++  +    +    L   G +  +  YS L+  L R G T   ++ +  M +  
Sbjct: 151 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE- 209

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              GV  +PN + Y  +I+ LCK+G V  A+ +  ++ +  ++PD  TY S+I G C  +
Sbjct: 210 ---GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 264

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D + A  +  +M  +G +P+ VT++ +++ LC +G+++EA  L+  MIL G+ P   T +
Sbjct: 265 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 324

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   C  G    A  LFV M++ GC+  V++Y
Sbjct: 325 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 358



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 563 PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 622

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ + ++SLI+ L  E ++ EA  LF +L+  G  P+ ITY  +I     
Sbjct: 623 FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 682

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL--------------------C 264
           +G    A N    M          C+P   TY  +I GL                    C
Sbjct: 683 SGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNC 736

Query: 265 KEGF--VDKAKELFLQMKDKNINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
             G+   D+     +  K   ++P   V   N+L+     A  W EAN LL  M+ QG+ 
Sbjct: 737 SFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLC 796

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD   +N ++  L +   +D A  + + M  +G   + + +  L+   C   R   A+  
Sbjct: 797 PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 856

Query: 381 FVSM 384
           F +M
Sbjct: 857 FENM 860



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 90/253 (35%), Gaps = 65/253 (25%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L +    +   +LF  L   GL PD  TY  +I  +   G+V H F  
Sbjct: 633 PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 692

Query: 165 LGRILRSCFTP------------------------------------------DAVAFTS 182
           LGR++++   P                                          DAV+  S
Sbjct: 693 LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMS 752

Query: 183 -----------------LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
                            L+  L    R  EA  L   + + G  P+   Y++L+  L R 
Sbjct: 753 AKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRV 812

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            +  +A+ +F+ M+         C+ +   Y  +I  LC+     +A+  F  M  +  N
Sbjct: 813 RNVDLAMGVFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWN 866

Query: 286 PDVVTYNSLIHGF 298
           PD V    LI G 
Sbjct: 867 PDDVVQAVLIDGL 879



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           + + D  L   P   P  SF        +T   D V  +  +L        +   N L++
Sbjct: 719 YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 772

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
                GR      +LG ++     PD  A+ SL+  L     +  A  +F  +   GC+ 
Sbjct: 773 NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 832

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           ++  Y  LI  LC+      A   FE M            P+ V    +IDGL ++G+ D
Sbjct: 833 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 886

Query: 271 KAKELFLQMKDKNINPDVVTYNSL 294
              E    M+ +   P    Y  L
Sbjct: 887 LCMEFLHIMETRRYMPSFHIYTIL 910


>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Cucumis sativus]
          Length = 581

 Score =  171 bits (433), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/398 (28%), Positives = 190/398 (47%), Gaps = 38/398 (9%)

Query: 9   SFHFT----------SISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRL 58
           S HFT          S S S   C FS+   H R   SS    +P  P           L
Sbjct: 10  SLHFTNPLAKPTIPQSRSDSIPACRFSNK-THLRNVTSSAEFRQPHFPN----------L 58

Query: 59  TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
             +D A L + L   C++           NE+    + +++    P  +    L+ G   
Sbjct: 59  DNRD-AHLMKLLNRSCRAGKH--------NESLYFLESVVSKGFKPDVVLCTKLIKG-FF 108

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
            +++    + + + L + G  PD+Y+YN +I+ F K  ++     V  R+    F+PD V
Sbjct: 109 NSRNLKKAMRVMEILETYG-DPDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVV 167

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            +  +I  LC+  ++  A  +  +L   GCKP+VITY+ LI      G    AL LF+E+
Sbjct: 168 TYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYTILIEATILEGRINEALELFDEL 227

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            +         +P+  TY  II G+CKEG  D+A +    +  +  NPDVV+YN L+  F
Sbjct: 228 VSRG------LRPDLYTYNAIIRGICKEGMEDRALDFVRHLSARGCNPDVVSYNILLRSF 281

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
              + W +   L+ +M+  G +P+VVT ++++   C+ G++ EA  +LE+M  +G+ P++
Sbjct: 282 LNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGRVREAVNVLEVMKEKGLTPDS 341

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++  L+  FC  GR++ A E    M S GC   + +Y
Sbjct: 342 YSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNY 379



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L+ R   P + S+N+L         ++    L K +  +G  P++ T++ILI+ FC+ GR
Sbjct: 262 LSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVVTHSILISSFCREGR 321

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     VL  +     TPD+ ++  LI   C E R+  A     K+ + GC P+++ Y+T
Sbjct: 322 VREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSDGCLPDIVNYNT 381

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++  LC+ G   +AL++FE++        V C P    Y T+   L   G   KA E+  
Sbjct: 382 ILATLCKFGCADLALDVFEKLDE------VGCPPTVRAYNTMFSALWSCGNKIKALEMIS 435

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  K I+PD +TYNSLI   C     +EA  LL++M     QP V++FN+++  +CK  
Sbjct: 436 EMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAH 495

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++ E   LL  M+ +G  PN +++  L++G    G    A EL  S+  +G
Sbjct: 496 RVFEGIELLITMVEKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLG 546



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 162/338 (47%), Gaps = 14/338 (4%)

Query: 66  LEQFLKERCKSSG-------QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
           +++ LK+ CK S        +  I     NEA  +FD +++ R   P L ++N +   + 
Sbjct: 189 MDELLKDGCKPSVITYTILIEATILEGRINEALELFDELVS-RGLRPDLYTYNAIIRGIC 247

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K    D  L   + L++ G  PD+ +YNIL+  F    R   G  ++  ++ S   P+ V
Sbjct: 248 KEGMEDRALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGERLMKDMVLSGCEPNVV 307

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
             + LI   C E R+ EA  +   +K  G  P+  +Y  LI+  C+ G   +A+   E+M
Sbjct: 308 THSILISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKM 367

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            +        C P+ V Y TI+  LCK G  D A ++F ++ +    P V  YN++    
Sbjct: 368 VSDG------CLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSAL 421

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
               +  +A  ++ EM+ +G+ PD +T+N ++  LC++G +DEA  LL  M      P  
Sbjct: 422 WSCGNKIKALEMISEMIRKGIDPDEITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTV 481

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +F+ ++ G C   RV    EL ++M   GC     SY
Sbjct: 482 ISFNIVLLGMCKAHRVFEGIELLITMVEKGCLPNETSY 519


>gi|449455469|ref|XP_004145475.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Cucumis sativus]
          Length = 728

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 14/308 (4%)

Query: 95  DYMLNMRPSPPPLTS--FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           D +L+MR     LT+   N +    A+ +  +   ++F  +++ G++PD  TY  +I  +
Sbjct: 195 DMILDMRNQGLVLTTRVMNRIILVAAEMRLVEYAGNVFDEMSARGVYPDSCTYKYIIVGY 254

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G V      +  ++   F  D    T +I   C +S +  A   F K+   G  PN+
Sbjct: 255 CRNGNVLEADRWICEMMERGFVVDNATLTLIITAFCEKSLVNRAVWFFHKVTKMGLSPNL 314

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           I YS++I+GLC+ G    A  L EEM   NG      KPN  T+T++I GLCK+G+ ++A
Sbjct: 315 INYSSMISGLCKRGSVKQAFELLEEMVK-NG-----WKPNVYTHTSLIHGLCKKGWTERA 368

Query: 273 KELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             LFL++ +  N  P+V TY ++I G+C     + A  L   M +QG+ P+  T+  ++D
Sbjct: 369 FRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTTLID 428

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS-----MES 386
             CK G   +A  L+ELM   G  PNT T+++++DG C  GR   A +L  +     +E+
Sbjct: 429 GHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQIEA 488

Query: 387 MGCKHTVF 394
            G  +T+ 
Sbjct: 489 DGVTYTIL 496



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 154/310 (49%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A   F  +  M  SP  L +++ +   L K         L + +   G  P++YT+  
Sbjct: 296 NRAVWFFHKVTKMGLSPN-LINYSSMISGLCKRGSVKQAFELLEEMVKNGWKPNVYTHTS 354

Query: 148 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK G     F +  +++RS  + P+   +T++I G C E ++  A  LF ++K  
Sbjct: 355 LIHGLCKKGWTERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQ 414

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN  TY+TLI+G C+ G+   A  L E M+N  G F     PNT TY +I+DGLCK 
Sbjct: 415 GLVPNTNTYTTLIDGHCKAGNFSKAYELMELMSN-EGFF-----PNTCTYNSIVDGLCKR 468

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G  ++A +L        I  D VTY  LI   C   D N+A   L +M   G QPD+  +
Sbjct: 469 GRAEEAFKLLNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLY 528

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++   C+   M ++ +L + +I  G+ P   T+++++ G+C   +V+ A + F  M  
Sbjct: 529 TTLIAAFCRQNMMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSD 588

Query: 387 MGCKHTVFSY 396
            GC     SY
Sbjct: 589 HGCAPDSISY 598



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 132/284 (46%), Gaps = 6/284 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             AF +F  ++      P + ++  +     K +       LF+R+   GL P+  TY  
Sbjct: 366 ERAFRLFLKLIRSDNYKPNVHTYTAMISGYCKEEKLSRAEMLFERMKEQGLVPNTNTYTT 425

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G  S  + ++  +    F P+   + S++ GLC   R  EA  L        
Sbjct: 426 LIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKLLNTGFQNQ 485

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + +TY+ LI+  C+      AL    +M      F V  +P+   YTT+I   C++ 
Sbjct: 486 IEADGVTYTILISEQCKRADMNQALVFLNKM------FKVGFQPDIHLYTTLIAAFCRQN 539

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  +++LF ++    + P   TY S+I G+C     + A     +M D G  PD +++ 
Sbjct: 540 MMKDSEKLFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYG 599

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            ++  LCK  ++DEA +L + MI +G++P   T  TL   +C T
Sbjct: 600 ALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKT 643



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 127/279 (45%), Gaps = 13/279 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L     K  ++     L + +++ G FP+  TYN +++  CK GR    F +
Sbjct: 418 PNTNTYTTLIDGHCKAGNFSKAYELMELMSNEGFFPNTCTYNSIVDGLCKRGRAEEAFKL 477

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L    ++    D V +T LI   C  + + +A     K+   G +P++  Y+TLI   CR
Sbjct: 478 LNTGFQNQIEADGVTYTILISEQCKRADMNQALVFLNKMFKVGFQPDIHLYTTLIAAFCR 537

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 +  LF+E+     K G+   P   TYT++I G C+E  V  A + F +M D   
Sbjct: 538 QNMMKDSEKLFDEVI----KLGLA--PTKETYTSMICGYCREKKVSLAVKFFQKMSDHGC 591

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD ++Y +LI G C  +  +EA  L   M+D+G+ P  VT   +  E CK      A  
Sbjct: 592 APDSISYGALISGLCKESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASA-- 649

Query: 345 LLELMILRGVNPN--TSTFSTLMDGFCLTGRVNHAKELF 381
              ++IL  +N      T  TL+   C   +V  A   F
Sbjct: 650 ---MVILERLNKKLWIRTVHTLIRKLCCEKKVALAALFF 685



 Score = 69.7 bits (169), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 64/129 (49%)

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A  +F +M  + + PD  TY  +I G+C   +  EA+  + EMM++G   D  T  
Sbjct: 224 LVEYAGNVFDEMSARGVYPDSCTYKYIIVGYCRNGNVLEADRWICEMMERGFVVDNATLT 283

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+   C+   ++ A      +   G++PN   +S+++ G C  G V  A EL   M   
Sbjct: 284 LIITAFCEKSLVNRAVWFFHKVTKMGLSPNLINYSSMISGLCKRGSVKQAFELLEEMVKN 343

Query: 388 GCKHTVFSY 396
           G K  V+++
Sbjct: 344 GWKPNVYTH 352



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 18/222 (8%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            + E+CK +          N+A    + M  +    P +  +  L     +         
Sbjct: 496 LISEQCKRADM--------NQALVFLNKMFKV-GFQPDIHLYTTLIAAFCRQNMMKDSEK 546

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF  +   GL P   TY  +I  +C+  +VS       ++      PD++++ +LI GLC
Sbjct: 547 LFDEVIKLGLAPTKETYTSMICGYCREKKVSLAVKFFQKMSDHGCAPDSISYGALISGLC 606

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            ESR+ EA  L+  +   G  P  +T  TL    C+T     A+ + E +   N K  + 
Sbjct: 607 KESRLDEARQLYDTMIDKGLSPCEVTRVTLTYEYCKTEDFASAMVILERL---NKKLWI- 662

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
                 T  T+I  LC E  V  A   F ++ DK +N D VT
Sbjct: 663 -----RTVHTLIRKLCCEKKVALAALFFHKLLDKEVNVDRVT 699


>gi|356552005|ref|XP_003544362.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g09680-like [Glycine max]
          Length = 509

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP    FN+L     K     +   +F  +   GL P + ++N LI+  CK G V  GF 
Sbjct: 139 PPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVEEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + G +      PD   F++LI GLC E R+ E + LF ++   G  PN +T++ LI+G C
Sbjct: 199 LKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQC 258

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           + G   +AL  F+ M A G        +P+ VTY  +I+GLCK G + +A+ L  +M   
Sbjct: 259 KGGKVDLALKNFQMMLAQG-------VRPDLVTYNALINGLCKVGDLKEARRLVNEMSAS 311

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PD +T+ +LI G C   D   A  +   M+++G++ D V F V++  LC++G++ +A
Sbjct: 312 GLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDA 371

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            R+L  M+  G  P+  T++ ++D FC  G V    +L   M+S G    V +Y
Sbjct: 372 ERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTY 425



 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/256 (37%), Positives = 141/256 (55%), Gaps = 6/256 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
            +G  P+ + +N+L++ FCK+G V    +V   I +    P  V+F +LI G C    + 
Sbjct: 135 DSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKAGAVE 194

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           E   L   +++    P+V T+S LINGLC+ G       LF+EM    GK G+V  PN V
Sbjct: 195 EGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMC---GK-GLV--PNGV 248

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+T +IDG CK G VD A + F  M  + + PD+VTYN+LI+G C   D  EA  L+ EM
Sbjct: 249 TFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEM 308

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
              G++PD +TF  ++D  CK G M+ A  +   M+  G+  +   F+ L+ G C  GRV
Sbjct: 309 SASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRV 368

Query: 375 NHAKELFVSMESMGCK 390
           + A+ +   M S G K
Sbjct: 369 HDAERMLRDMLSAGFK 384



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 102/323 (31%), Positives = 161/323 (49%), Gaps = 15/323 (4%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CK  G G         A  +FD  +  R   P + SFN L     K    +    L   +
Sbjct: 153 CKVGGVG--------SARLVFDE-IPKRGLRPTVVSFNTLISGCCKAGAVEEGFRLKGVM 203

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
            S  + PD++T++ LIN  CK GR+  G ++   +      P+ V FT LI G C   ++
Sbjct: 204 ESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKV 263

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
             A   F  + A G +P+++TY+ LINGLC+ G    A  L  EM+          +P+ 
Sbjct: 264 DLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASG------LRPDR 317

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           +T+TT+IDG CK G ++ A E+  +M ++ I  D V +  LI G C     ++A  +L +
Sbjct: 318 ITFTTLIDGCCKYGDMESALEIKRRMVEEGIELDDVAFTVLISGLCRDGRVHDAERMLRD 377

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+  G +PD  T+ +++D  CK G +    +LL+ M   G  P   T++ LM+G C  G+
Sbjct: 378 MLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQ 437

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           V +AK L  +M ++G      +Y
Sbjct: 438 VKNAKMLLDAMLNVGVAPNDITY 460



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 87/268 (32%), Positives = 131/268 (48%), Gaps = 6/268 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F+ L   L K    D    LF  +   GL P+  T+ +LI+  CK G+V      
Sbjct: 210 PDVFTFSALINGLCKEGRLDEGSLLFDEMCGKGLVPNGVTFTVLIDGQCKGGKVDLALKN 269

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD V + +LI GLC    + EA  L  ++ A G +P+ IT++TLI+G C+
Sbjct: 270 FQMMLAQGVRPDLVTYNALINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCK 329

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL +   M     +       + V +T +I GLC++G V  A+ +   M     
Sbjct: 330 YGDMESALEIKRRMVEEGIEL------DDVAFTVLISGLCRDGRVHDAERMLRDMLSAGF 383

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY  ++  FC   +      LL EM   G  P VVT+N +M+ LCK G++  A  
Sbjct: 384 KPDDPTYTMVVDCFCKKGNVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKM 443

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTG 372
           LL+ M+  GV PN  T++ L++G    G
Sbjct: 444 LLDAMLNVGVAPNDITYNILLEGHSKHG 471



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 125/250 (50%), Gaps = 7/250 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   +FD M      P  +T F +L     K    D  L  F+ + + G+ PDL TYN 
Sbjct: 229 DEGSLLFDEMCGKGLVPNGVT-FTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNA 287

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK+G +     ++  +  S   PD + FT+LI G C    +  A  +  ++   G
Sbjct: 288 LINGLCKVGDLKEARRLVNEMSASGLRPDRITFTTLIDGCCKYGDMESALEIKRRMVEEG 347

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + + ++ LI+GLCR G    A  +  +M +         KP+  TYT ++D  CK+G
Sbjct: 348 IELDDVAFTVLISGLCRDGRVHDAERMLRDMLSAG------FKPDDPTYTMVVDCFCKKG 401

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V    +L  +M+     P VVTYN+L++G C       A  LL  M++ GV P+ +T+N
Sbjct: 402 NVXMGFKLLKEMQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYN 461

Query: 328 VIMDELCKNG 337
           ++++   K+G
Sbjct: 462 ILLEGHSKHG 471



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 110/196 (56%), Gaps = 6/196 (3%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
            + A + ++   G  PN   ++ L++G C+ G    A  +F+E+     K G+  +P  V
Sbjct: 125 RSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIP----KRGL--RPTVV 178

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           ++ T+I G CK G V++   L   M+ + + PDV T+++LI+G C     +E + L  EM
Sbjct: 179 SFNTLISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 238

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +G+ P+ VTF V++D  CK GK+D A +  ++M+ +GV P+  T++ L++G C  G +
Sbjct: 239 CGKGLVPNGVTFTVLIDGQCKGGKVDLALKNFQMMLAQGVRPDLVTYNALINGLCKVGDL 298

Query: 375 NHAKELFVSMESMGCK 390
             A+ L   M + G +
Sbjct: 299 KEARRLVNEMSASGLR 314



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/116 (31%), Positives = 63/116 (54%)

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++++   +L++ D    P+   +N L+HGFC       A  +  E+  +G++P VV+FN 
Sbjct: 123 LERSWAFYLEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNT 182

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++   CK G ++E  RL  +M    V P+  TFS L++G C  GR++    LF  M
Sbjct: 183 LISGCCKAGAVEEGFRLKGVMESERVCPDVFTFSALINGLCKEGRLDEGSLLFDEM 238



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 9/154 (5%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +F +L   L +         + + + S G  PD  TY ++++CFCK G V  GF +L  
Sbjct: 353 VAFTVLISGLCRDGRVHDAERMLRDMLSAGFKPDDPTYTMVVDCFCKKGNVXMGFKLLKE 412

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P  V + +L+ GLC + ++  A  L   +   G  PN ITY+ L+ G  + G 
Sbjct: 413 MQSDGHVPGVVTYNALMNGLCKQGQVKNAKMLLDAMLNVGVAPNDITYNILLEGHSKHGS 472

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           + V +++F      N + G+V   +  +YT +++
Sbjct: 473 S-VDVDIF------NSEKGLV--KDYASYTALVN 497



 Score = 49.7 bits (117), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 43/85 (50%)

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
           +E++D G  P+   FNV+M   CK G +  A  + + +  RG+ P   +F+TL+ G C  
Sbjct: 131 LEVLDSGYPPNFFFFNVLMHGFCKVGGVGSARLVFDEIPKRGLRPTVVSFNTLISGCCKA 190

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G V     L   MES      VF++
Sbjct: 191 GAVEEGFRLKGVMESERVCPDVFTF 215


>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
 gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
          Length = 628

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 164/358 (45%), Gaps = 49/358 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF  M +     P + +FN L   L   +       LF+ +   G  P++ +Y+ 
Sbjct: 125 DDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR+     +   ++     PD VA+TS + GLC  +R+ EA     K+   G
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 208 CKPNVITYSTLINGLCRTGHTIVALN-----------------LFEEMANGNGK------ 244
            K + + +ST+I  LC+ GH   A N                  FEEM + N        
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 245 ---FGVVCK-----------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                 VCK                       PN  TY  ++D LCK   +D+A+EL  +
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNE 364

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M +  ++PDVVTY++L+ G C     + A  LL EM  +GV PD  T   I++ L K GK
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGK 424

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +D A   LE M  RG  P+  T++TL+DG C  GR++ A      M +  C   VFSY
Sbjct: 425 VDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/313 (30%), Positives = 160/313 (51%), Gaps = 24/313 (7%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD++   +     + ++N     LAK          F+++   G  PD +TY+I++   
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPN 211
           CK G +     +LG++  S    + + ++ +I G C  SR+ +A  +F  + +  GC P+
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSSGGGCVPD 143

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+T+++L+ GLC       A  LFE MA         C+PN ++Y+T++DGLCK G +D+
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAG------CEPNVISYSTLLDGLCKAGRLDE 197

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF----- 326
           A  L+ +M +K+  PD+V Y S + G C AN   EA     +M+ +G + D V F     
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 327 ------------NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
                       N +++ LC++G +DEA +  E MI R   P+   F+TL+   C + R+
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 375 NHAKELFVSMESM 387
                LF  M+SM
Sbjct: 318 PDGVLLFQRMKSM 330



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 15/313 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF---PDLYT 144
           +EA   F+ M++ R  PP    FN L   + K+K     + LF+R+ S   F   P+L T
Sbjct: 283 DEACKTFEEMIS-RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           YNI+++  CK  ++     ++  +     +PD V +++L+ GLC   ++  A  L  ++ 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGL 263
             G  P+  T ++++N L + G    AL+  E M A G+        P+ VTY T++DGL
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS-------TPDLVTYNTLLDGL 454

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +D+A     +M      PDV +Y  +I   C +     A+ +  EM+ +GV PD 
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDT 514

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V ++ ++D L +NG  D A   LEL+      P+      ++DG C  G+   A E+   
Sbjct: 515 VLYHSLLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVER 571

Query: 384 MESMGCKHTVFSY 396
           M   G     F+Y
Sbjct: 572 MADAGFPADAFTY 584



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 148/291 (50%), Gaps = 13/291 (4%)

Query: 93  IFDYMLNMRP--SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           +F  M +M+    PP L ++N++   L K K  D    L   + + GL PD+ TY+ L++
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             CK+G++     +L  + +    PD+    S++  L    ++  A +    +KA G  P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +++TY+TL++GLC+ G    A+    +M          C P+  +YT II  LC+ G   
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK------CTPDVFSYTIIITALCRSGQAA 496

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTFNVI 329
            A  +F +M  + + PD V Y+SL+ G       N    L +E++   + +PD V   ++
Sbjct: 497 GAHAIFQEMVKRGVLPDTVLYHSLLDGLAR----NGLEDLALELLKTSLCKPDFVMHKMV 552

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           +D LCK GK ++A  ++E M   G   +  T+ +++ G    G+V+ A++L
Sbjct: 553 LDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQL 603



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 154/356 (43%), Gaps = 62/356 (17%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +F+YM       P + S++ L   L K    D    L++ +      PDL  Y  
Sbjct: 161 SEAFVLFEYMAKA-GCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTS 219

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS------------------------- 182
            +   CK  RV+       +++      DAVAF++                         
Sbjct: 220 FVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279

Query: 183 ---------------------------LIKGLCAESRIMEAAALFTKLKA---FGCKPNV 212
                                      LI  +C   R+ +   LF ++K+   F C PN+
Sbjct: 280 GMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNL 339

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+ +++ LC+      A  L  EMAN    +G+   P+ VTY+ ++DGLCK G +D+A
Sbjct: 340 ETYNIMVDNLCKAKQLDEAQELVNEMAN----YGL--SPDVVTYSALVDGLCKLGKLDRA 393

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L  +M  + + PD  T  S+++    A   + A   L  M  +G  PD+VT+N ++D 
Sbjct: 394 CDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDG 453

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LCK G++DEA   L  M+     P+  +++ ++   C +G+   A  +F  M   G
Sbjct: 454 LCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 10/260 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M N   SP  +T   L+ G L K    D    L + ++  G+FPD +T   
Sbjct: 356 DEAQELVNEMANYGLSPDVVTYSALVDG-LCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N   K G+V +    L  +     TPD V + +L+ GLC   RI EA     K+ A  
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V +Y+ +I  LCR+G    A  +F+EM     K GV+  P+TV Y +++DGL + G
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMV----KRGVL--PDTVLYHSLLDGLARNG 528

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A EL   +K     PD V +  ++ G C A    +A  ++  M D G   D  T+ 
Sbjct: 529 LEDLALEL---LKTSLCKPDFVMHKMVLDGLCKAGKAEDACEVVERMADAGFPADAFTYI 585

Query: 328 VIMDELCKNGKMDEASRLLE 347
            ++  L K GK+D+A +L++
Sbjct: 586 SVVSGLRKLGKVDKARQLVD 605



 Score = 87.8 bits (216), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 6/183 (3%)

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ +   L   G     + LF+ +    G      + +  TY   +D L K      A E
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGY-----QHSVFTYNCFLDALAKANAGQLAYE 59

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
            F QM+ +   PD  TY+ ++ G C A + ++A  LL ++ + GV+ +V+T++V++D  C
Sbjct: 60  KFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCC 119

Query: 335 KNGKMDEASRLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           K  ++D+A  + + M    G  P+  TF++L+ G C   R++ A  LF  M   GC+  V
Sbjct: 120 KASRVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNV 179

Query: 394 FSY 396
            SY
Sbjct: 180 ISY 182



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 32/175 (18%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R S P L ++N L   L K    D  ++   ++ +    PD+++Y I+I   C+ G+
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGL------------------------------ 187
            +    +   +++    PD V + SL+ GL                              
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVLD 554

Query: 188 --CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
             C   +  +A  +  ++   G   +  TY ++++GL + G    A  L ++ + 
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGKVDKARQLVDDASE 609


>gi|255660840|gb|ACU25589.1| pentatricopeptide repeat-containing protein [Pitraea cuneato-ovata]
          Length = 418

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V S +K +        LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWSFYKEILECRYPASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G +D A E++ QM  +  +PD +TYN+LI+
Sbjct: 231 EMLDR----GLV--PNGVTFTTLIDGHCKNGKLDLAMEIYKQMLSQGFSPDXITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L  EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 345 DDVSYTALISGLCKEGRSVDAEKMLREMLSVGLKPDTGTY 384



 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/285 (31%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMDRFCKEGEIRLAQSVFDGITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M +          P+ +TY T+I GLCK+G + +AK+L  +M  K 
Sbjct: 253 KNGKLDLAMEIYKQMLSQG------FSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V++  ++  LCK G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+T T++ +M  FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDG 411



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 70/221 (31%), Positives = 111/221 (50%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    D    LF  +   GL P+  T+  LI+  CK G++     +
Sbjct: 204 PDVYTYSVLINGLCKESKMDEAHKLFDEMLDRGLVPNGVTFTTLIDGHCKNGKLDLAMEI 263

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L   F+PD + + +LI GLC +  + +A  L  ++   G KP+ ITY+TLI+G C+
Sbjct: 264 YKQMLSQGFSPDXITYNTLIYGLCKKGDLXQAKDLXDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    + M   N +       + V+YT +I GLCKEG    A+++  +M    +
Sbjct: 324 EGDLETAFEYRKRMIKENIRL------DDVSYTALISGLCKEGRSVDAEKMLREMLSVGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            PD  TY  ++H FC   D    + LL EM   G  P V+T
Sbjct: 378 KPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 47/117 (40%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++M+   P   ++  L     K    +T     KR+    +  D  +Y  LI+  CK GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVSYTALISGLCKEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
                 +L  +L     PD   +T ++   C    +   + L  +++  G  P VIT
Sbjct: 362 SVDAEKMLREMLSVGLKPDTGTYTIVMHEFCKNGDVKMGSKLLKEMQRDGHVPCVIT 418


>gi|357499665|ref|XP_003620121.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495136|gb|AES76339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 408

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 99/321 (30%), Positives = 158/321 (49%), Gaps = 39/321 (12%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F+ + N  P+PP ++ F  +   LA +  Y   LS  ++L+  G+ PDL+TYN+LINCF 
Sbjct: 51  FNRLTNQIPTPP-ISQFGRILASLALSNRYSIALSFHQKLHFKGIKPDLFTYNVLINCFS 109

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           ++G  +H               D V++ +LI GLC       A  L  ++     + +V+
Sbjct: 110 QLGH-THFL-------------DRVSYETLINGLCKVGETRAALRLLKEVNEKIVQYDVV 155

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y+ +INGLC+      A +L+ EM            P+  TY  +I G C  G +  A 
Sbjct: 156 MYTAIINGLCKDKLVDDAFDLYTEMVAKR------VSPDVFTYNAMIYGFCVVGRLKDAI 209

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            LF  MK +N+  D  T+N+L+  FC   +  E   ++  MM +GV+PD++T+N +MD  
Sbjct: 210 GLFNDMKLENVEADEYTFNTLVSAFCKEGNVREGKAVVAVMMKEGVKPDIITYNSLMDGY 269

Query: 334 CKNGKMDEASRLLELMILRGVN------------------PNTSTFSTLMDGFCLTGRVN 375
           C   ++D+A  +   M+ RGV                   P+T  +S+L+DGFC +GR+ 
Sbjct: 270 CLVKEVDKAKNIFNTMVQRGVTANVRTMNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIP 329

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A EL   M   G    + +Y
Sbjct: 330 QALELVDEMHDRGQPPNIITY 350



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 58/112 (51%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           ++LF+ ++   + PD   Y+ LI+ FCK GR+     ++  +      P+ + + S++  
Sbjct: 297 MNLFQEMHCKEIIPDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYA 356

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           LC    + +  AL  K+K  G +P+  TY+ L NGL + G    A  +F ++
Sbjct: 357 LCKIHHVEKTIALLRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIFPDL 408



 Score = 49.3 bits (116), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 44/99 (44%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +++ L     K+      L L   ++  G  P++ TYN ++   CK+  V     +
Sbjct: 310 PDTIAYSSLIDGFCKSGRIPQALELVDEMHDRGQPPNIITYNSILYALCKIHHVEKTIAL 369

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           L +I      PDA  +T L  GL  + R+ EA  +F  L
Sbjct: 370 LRKIKVKGIQPDAYTYTILTNGLFKDGRLEEAREIFPDL 408


>gi|357140697|ref|XP_003571900.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09820-like [Brachypodium distachyon]
          Length = 571

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 104/335 (31%), Positives = 164/335 (48%), Gaps = 33/335 (9%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F   L  R SP  L +FN++   L KT        + K + + GL P + TYN +I+ +C
Sbjct: 173 FKAALRRRVSPD-LFTFNIVISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYC 231

Query: 154 KMGRVS---HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
           K GR     H   +L  ++ +  +P+ V F  L+ G C +S    A  +F ++K  G   
Sbjct: 232 KRGRAGRMYHVDALLKEMVEAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMKQQGIAA 291

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVV------- 248
           +V+TYS L+ GLC  G     + L +EM                NG  K G++       
Sbjct: 292 SVVTYSALVWGLCSEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWI 351

Query: 249 -------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                   KPN VTYT ++DG  +   +  A  +   M  K + P+   YN LI GF   
Sbjct: 352 DSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRN 411

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            DW   + LL EM  +GV+ D+VT+NV++  LC  G++ +A +LL+ M++ G+ P   T+
Sbjct: 412 GDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTY 471

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +T+++G+C  G +  A E+   ME    +  V +Y
Sbjct: 472 NTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTY 506



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 94/312 (30%), Positives = 152/312 (48%), Gaps = 13/312 (4%)

Query: 89  EAFCIF-DYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           EAF +  D     RPS     S N L   L   +  D     FK      + PDL+T+NI
Sbjct: 134 EAFLLAGDAHPRHRPSA---FSVNRLLSALVAAERVDLAERAFKAALRRRVSPDLFTFNI 190

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE---SRIMEAAALFTKLK 204
           +I+  CK G++     V   I      P  V + ++I G C      R+    AL  ++ 
Sbjct: 191 VISGLCKTGQLRKAGDVAKDIRAWGLAPSVVTYNTIIDGYCKRGRAGRMYHVDALLKEMV 250

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G  PN +T++ L+NG C+  +T  A+ +FEEM     + G+    + VTY+ ++ GLC
Sbjct: 251 EAGISPNEVTFNVLVNGYCKDSNTAAAVRVFEEMK----QQGIAA--SVVTYSALVWGLC 304

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
            EG V++  +L  +MKD  + P++ T NS+++GFC      +A   +  M  + V+P+VV
Sbjct: 305 SEGKVEEGVKLVDEMKDLGLVPNLATLNSVLNGFCKKGMMTDAEGWIDSMEQKNVKPNVV 364

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+ +++D   +  KM +A  + E M  +GV PN   ++ L+ GF   G       L   M
Sbjct: 365 TYTILVDGYRRLDKMKDALAVKEAMSGKGVRPNARIYNCLIAGFTRNGDWRSVSGLLDEM 424

Query: 385 ESMGCKHTVFSY 396
              G +  + +Y
Sbjct: 425 RMKGVRADIVTY 436



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 137/283 (48%), Gaps = 7/283 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F+ M     +   +T   L++G  ++ K  + V  L   +   GL P+L T N ++
Sbjct: 277 AVRVFEEMKQQGIAASVVTYSALVWGLCSEGKVEEGV-KLVDEMKDLGLVPNLATLNSVL 335

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N FCK G ++     +  + +    P+ V +T L+ G     ++ +A A+   +   G +
Sbjct: 336 NGFCKKGMMTDAEGWIDSMEQKNVKPNVVTYTILVDGYRRLDKMKDALAVKEAMSGKGVR 395

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN   Y+ LI G  R G       L +EM           + + VTY  +I  LC +G V
Sbjct: 396 PNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKG------VRADIVTYNVLIGALCVKGEV 449

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA +L  +M    + P  +TYN++I+G+C   +   A  +   M     + +VVT+NV 
Sbjct: 450 RKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVF 509

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           +  LC+ GKM+E + LL  M+ +G+ PN  T+ T+ +G    G
Sbjct: 510 IKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDTIKEGMMEKG 552



 Score = 78.2 bits (191), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 76/164 (46%), Gaps = 6/164 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L     +   + +V  L   +   G+  D+ TYN+LI   C  G V     +
Sbjct: 396 PNARIYNCLIAGFTRNGDWRSVSGLLDEMRMKGVRADIVTYNVLIGALCVKGEVRKAVKL 455

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P  + + ++I G C +  I  A  + T+++    + NV+TY+  I  LCR
Sbjct: 456 LDEMLMVGLEPVHLTYNTIINGYCEKGNIKSAYEIRTRMEKGKKRANVVTYNVFIKCLCR 515

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            G       L  EM     + G+V  PN VTY TI +G+ ++G+
Sbjct: 516 MGKMEETNELLNEML----EKGLV--PNGVTYDTIKEGMMEKGY 553



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 59/131 (45%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + M+     + ++N+L G L         + L   +   GL P   TYN +IN +C+ G 
Sbjct: 424 MRMKGVRADIVTYNVLIGALCVKGEVRKAVKLLDEMLMVGLEPVHLTYNTIINGYCEKGN 483

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +   + +  R+ +     + V +   IK LC   ++ E   L  ++   G  PN +TY T
Sbjct: 484 IKSAYEIRTRMEKGKKRANVVTYNVFIKCLCRMGKMEETNELLNEMLEKGLVPNGVTYDT 543

Query: 218 LINGLCRTGHT 228
           +  G+   G+T
Sbjct: 544 IKEGMMEKGYT 554


>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 443

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/277 (31%), Positives = 146/277 (52%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   +  T  +     L   +   G  P + T+NILIN  C+ G +     V
Sbjct: 152 PDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDV 211

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ +   TP+++++  L+ G C E ++  A     K+ + GC P+++TY+TL+  LC+
Sbjct: 212 LEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCK 271

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ L  ++++        C P  +TY T+IDGL K G  D+A +L  +M+ K +
Sbjct: 272 DGKVDAAVELLNQLSSKG------CSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGL 325

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+SL+ G       +EA     ++   GV+P+ +T+N IM  LCK  K D A  
Sbjct: 326 KPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAID 385

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            L  M+ RG  P  ++++ L++G    G    A EL 
Sbjct: 386 FLAYMVQRGCKPTEASYTILIEGLAYEGLAKEALELL 422



 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 88/260 (33%), Positives = 145/260 (55%), Gaps = 6/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD+     LI  FCK+G+      ++  I  S   PD + +  LI G+C+  R M+A
Sbjct: 114 GDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDA 173

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L   +   GC P+V+T++ LIN LCR G    A+++ E+M     K G  C PN+++Y
Sbjct: 174 EKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMP----KHG--CTPNSLSY 227

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             ++ G CKE  +++A E   +M  +   PD+VTYN+L+   C     + A  LL ++  
Sbjct: 228 NPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSS 287

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  P ++T+N ++D L K GK D+A++LL+ M  +G+ P+  T+S+L+ G    G+V+ 
Sbjct: 288 KGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDE 347

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A + F  +E +G K    +Y
Sbjct: 348 AIKFFHDLEVLGVKPNAITY 367



 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/295 (31%), Positives = 152/295 (51%), Gaps = 9/295 (3%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P   P TS    F  + KT+    ++ +   +  +G  PD+ TYN+LI+  C  GR    
Sbjct: 117 PDIIPCTSLIRGFCKIGKTRKATRIMEI---IEDSGAVPDVITYNVLISGMCSTGRWMDA 173

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  ++R   +P  V F  LI  LC +  +  A  +  K+   GC PN ++Y+ L++G
Sbjct: 174 EKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHG 233

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C+      A+    +M +        C P+ VTY T++  LCK+G VD A EL  Q+  
Sbjct: 234 FCKEKKMERAIEYLGKMTSRG------CYPDIVTYNTLLTALCKDGKVDAAVELLNQLSS 287

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K  +P ++TYN++I G       ++A  LL EM  +G++PD++T++ ++  L + GK+DE
Sbjct: 288 KGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGKVDE 347

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A +    + + GV PN  T++ +M G C   + + A +    M   GCK T  SY
Sbjct: 348 AIKFFHDLEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASY 402



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 130/245 (53%), Gaps = 6/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
             + G +  GF  L  ++     PD +  TSLI+G C   +  +A  +   ++  G  P+
Sbjct: 94  LVRNGELEEGFRFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPD 153

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           VITY+ LI+G+C TG  + A  L  +M          C P+ VT+  +I+ LC++G + +
Sbjct: 154 VITYNVLISGMCSTGRWMDAEKLLADMVRRG------CSPSVVTFNILINFLCRKGLLGR 207

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A ++  +M      P+ ++YN L+HGFC       A   L +M  +G  PD+VT+N ++ 
Sbjct: 208 AIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLT 267

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LCK+GK+D A  LL  +  +G +P   T++T++DG    G+ + A +L   M + G K 
Sbjct: 268 ALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKP 327

Query: 392 TVFSY 396
            + +Y
Sbjct: 328 DIITY 332



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 80/262 (30%), Positives = 141/262 (53%), Gaps = 10/262 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +FN+L   L +       + + +++   G  P+  +YN L++ FCK  ++  
Sbjct: 183 RGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFCKEKKMER 242

Query: 161 GFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               LG++  R C+ PD V + +L+  LC + ++  A  L  +L + GC P +ITY+T+I
Sbjct: 243 AIEYLGKMTSRGCY-PDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVI 301

Query: 220 NGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           +GL + G T  A  L +EM A G        KP+ +TY++++ GL +EG VD+A + F  
Sbjct: 302 DGLSKVGKTDQAAKLLDEMRAKG-------LKPDIITYSSLVGGLSREGKVDEAIKFFHD 354

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           ++   + P+ +TYN+++ G C A   + A   L  M+ +G +P   ++ ++++ L   G 
Sbjct: 355 LEVLGVKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGL 414

Query: 339 MDEASRLLELMILRGVNPNTST 360
             EA  LL  + LRGV   +S 
Sbjct: 415 AKEALELLNELCLRGVVKKSSA 436



 Score = 79.0 bits (193), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 83/183 (45%), Gaps = 20/183 (10%)

Query: 218 LINGLCRTGHT----IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           L NG    GH     I +L  FEE+ + N                 +  L + G +++  
Sbjct: 61  LPNGHLGNGHVSLSPIHSLTNFEEIESNNN----------------LSKLVRNGELEEGF 104

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
                M  +   PD++   SLI GFC      +A  ++  + D G  PDV+T+NV++  +
Sbjct: 105 RFLESMVYRGDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGM 164

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C  G+  +A +LL  M+ RG +P+  TF+ L++  C  G +  A ++   M   GC    
Sbjct: 165 CSTGRWMDAEKLLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNS 224

Query: 394 FSY 396
            SY
Sbjct: 225 LSY 227



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 65/147 (44%), Gaps = 12/147 (8%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L+ +   P L ++N +   L+K    D    L   + + GL PD+ TY+ L+    + G+
Sbjct: 285 LSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGK 344

Query: 158 VS------HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           V       H   VLG        P+A+ + +++ GLC   +   A      +   GCKP 
Sbjct: 345 VDEAIKFFHDLEVLG------VKPNAITYNAIMLGLCKARKTDRAIDFLAYMVQRGCKPT 398

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEM 238
             +Y+ LI GL   G    AL L  E+
Sbjct: 399 EASYTILIEGLAYEGLAKEALELLNEL 425


>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
          Length = 457

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 161/340 (47%), Gaps = 38/340 (11%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D ML  R   P + ++ +L     K   Y   + L   +   G  PD+ TYN+++
Sbjct: 51  ALAVLDEMLRRR-CVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVV 109

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   GC 
Sbjct: 110 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 169

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--------------------- 248
           PNV+T++ LI+ LCR G    AL + E++     K+G                       
Sbjct: 170 PNVVTFNMLISFLCRKGLVEPALEVLEQIP----KYGCTPNSLSYNPLLHAFCKQKKMDK 225

Query: 249 ------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                       C P+ V+Y T++  LC+ G VD A EL  Q+KDK   P +++YN++I 
Sbjct: 226 AMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVID 285

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A    EA  LL EM+ +G+QPD++T++ I   LC+  ++++A R    +   G+ P
Sbjct: 286 GLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRP 345

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           NT  ++ ++ G C     + A +LF  M   GC     +Y
Sbjct: 346 NTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 385



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/257 (33%), Positives = 140/257 (54%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD YTYN LI   C  GR ++   VL  +LR    PD V +T L++  C  S   +A  L
Sbjct: 30  PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKL 89

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +++  GC P+++TY+ ++NG+C+ G    A+   + + +    +G  C+PNTV+Y  +
Sbjct: 90  LDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPS----YG--CEPNTVSYNIV 143

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GLC     + A+EL  +M  K   P+VVT+N LI   C       A  +L ++   G 
Sbjct: 144 LKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGC 203

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+ +++N ++   CK  KMD+A   L+LM+ RG  P+  +++TL+   C +G V+ A E
Sbjct: 204 TPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVE 263

Query: 380 LFVSMESMGCKHTVFSY 396
           L   ++  GC   + SY
Sbjct: 264 LLHQLKDKGCAPVLISY 280



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 147/277 (53%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L   +   G  P++ T+N+LI+  C+ G V     V
Sbjct: 135 PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 194

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   TP+++++  L+   C + ++ +A A    + + GC P++++Y+TL+  LCR
Sbjct: 195 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 254

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G   VA+ L  ++ +        C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 255 SGEVDVAVELLHQLKDKG------CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 308

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C  +   +A     ++ D G++P+ V +N I+  LCK  +   A  
Sbjct: 309 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAID 368

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           L   MI  G  PN ST++ L++G    G +  A++L 
Sbjct: 369 LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLL 405



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 146/295 (49%), Gaps = 6/295 (2%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N L   L         L++   +      PD+ TY IL+   CK       
Sbjct: 27  PVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQA 86

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L  +     TPD V +  ++ G+C E R+ +A      L ++GC+PN ++Y+ ++ G
Sbjct: 87  MKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKG 146

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC       A  L  EM    G+ G  C PN VT+  +I  LC++G V+ A E+  Q+  
Sbjct: 147 LCTAERWEDAEELMGEM----GQKG--CPPNVVTFNMLISFLCRKGLVEPALEVLEQIPK 200

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
               P+ ++YN L+H FC     ++A   L  M+ +G  PD+V++N ++  LC++G++D 
Sbjct: 201 YGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEVDV 260

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  LL  +  +G  P   +++T++DG    G+   A EL   M S G +  + +Y
Sbjct: 261 AVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITY 315



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 8/257 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  +  PP + +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  +
Sbjct: 163 MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 222

Query: 158 VSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +      L  ++ R C+ PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+
Sbjct: 223 MDKAMAFLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYN 281

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I+GL + G T  AL L  EM +         +P+ +TY+TI  GLC+E  ++ A   F
Sbjct: 282 TVIDGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAIRAF 335

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +++D  I P+ V YN++I G C   + + A  L   M+  G  P+  T+ ++++ L   
Sbjct: 336 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 395

Query: 337 GKMDEASRLLELMILRG 353
           G + EA  LL+ +  R 
Sbjct: 396 GLIKEARDLLDELCSRA 412



 Score = 75.9 bits (185), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/140 (30%), Positives = 63/140 (45%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N +   L K       L L   + S GL PD+ TY+ +    C+  R+      
Sbjct: 275 PVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCREDRIEDAIRA 334

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G++      P+ V + ++I GLC       A  LF  +   GC PN  TY+ LI GL  
Sbjct: 335 FGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAY 394

Query: 225 TGHTIVALNLFEEMANGNGK 244
            G    A +L +E+ +  G+
Sbjct: 395 EGLIKEARDLLDELCSRAGE 414



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 66/140 (47%), Gaps = 32/140 (22%)

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEM----------------------------MDQGVQ 320
           + YN+++ G+C A   + A  L+ EM                            +D+ ++
Sbjct: 1   MAYNAMVAGYCGAGQLDAARRLVAEMPVEPDAYTYNTLIRGLCGRGRTANALAVLDEMLR 60

Query: 321 ----PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
               PDVVT+ ++++  CK     +A +LL+ M  +G  P+  T++ +++G C  GRV+ 
Sbjct: 61  RRCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDD 120

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A E   ++ S GC+    SY
Sbjct: 121 AIEFLKNLPSYGCEPNTVSY 140


>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
 gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
 gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 472

 Score =  171 bits (433), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 106/316 (33%), Positives = 158/316 (50%), Gaps = 19/316 (6%)

Query: 85  ITPNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPD 141
           +  N+    F +  NMR    PP + S N+L   L +     D  L +F  +   G  PD
Sbjct: 132 VEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPD 191

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
            YTY  LI+  C+ GR+     +   ++     P  V +TSLI GLC    + EA     
Sbjct: 192 SYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLE 251

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE-EMANGNGKFGVVCKPNTVTYTTII 260
           ++K+ G +PNV TYS+L++GLC+ G ++ A+ LFE  MA G       C+PN VTYTT+I
Sbjct: 252 EMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG-------CRPNMVTYTTLI 304

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLCKE  + +A EL  +M  + + PD   Y  +I GFC  + + EA   L EM+  G+ 
Sbjct: 305 TGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGIT 364

Query: 321 PDVVTFNV-------IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           P+ +T+N+       ++  LC N     A  L   M  RG++    T  +L+   C  G 
Sbjct: 365 PNRLTWNIHVKTSNEVVRGLCANYP-SRAFTLYLSMRSRGISVEVETLESLVKCLCKKGE 423

Query: 374 VNHAKELFVSMESMGC 389
              A +L   + + GC
Sbjct: 424 FQKAVQLVDEIVTDGC 439



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/341 (29%), Positives = 165/341 (48%), Gaps = 20/341 (5%)

Query: 56  LRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG 115
           +R+ +++    E  L   C+  G+       P ++  +F  M +     P   ++  +  
Sbjct: 75  VRMKIENCVVSEDILLSICRGYGR----VHRPFDSLRVFHKMKDF-DCDPSQKAYVTVLA 129

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-GRVSHGFVVLGRILRSCFT 174
            L +    +     +K +   GL P + + N+LI   C+  G V  G  +   + +    
Sbjct: 130 ILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCD 189

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           PD+  + +LI GLC   RI EA  LFT++    C P V+TY++LINGLC + +   A+  
Sbjct: 190 PDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRY 249

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            EEM +         +PN  TY++++DGLCK+G   +A ELF  M  +   P++VTY +L
Sbjct: 250 LEEMKSKG------IEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTL 303

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G C      EA  LL  M  QG++PD   +  ++   C   K  EA+  L+ MIL G+
Sbjct: 304 ITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAISKFREAANFLDEMILGGI 363

Query: 355 NPNTSTF-------STLMDGFCLTGRVNHAKELFVSMESMG 388
            PN  T+       + ++ G C     + A  L++SM S G
Sbjct: 364 TPNRLTWNIHVKTSNEVVRGLC-ANYPSRAFTLYLSMRSRG 403



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 80/217 (36%), Positives = 125/217 (57%), Gaps = 7/217 (3%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA-LN 233
           P   A+ +++  L  E+++  A   +  ++  G  P V + + LI  LCR   T+ A L 
Sbjct: 119 PSQKAYVTVLAILVEENQLNLAFKFYKNMREIGLPPTVASLNVLIKALCRNDGTVDAGLK 178

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +F EM          C P++ TY T+I GLC+ G +D+AK+LF +M +K+  P VVTY S
Sbjct: 179 IFLEMPKRG------CDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPTVVTYTS 232

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G C + + +EA   L EM  +G++P+V T++ +MD LCK+G+  +A  L E+M+ RG
Sbjct: 233 LINGLCGSKNVDEAMRYLEEMKSKGIEPNVFTYSSLMDGLCKDGRSLQAMELFEMMMARG 292

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             PN  T++TL+ G C   ++  A EL   M   G K
Sbjct: 293 CRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLK 329



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 70/216 (32%), Positives = 111/216 (51%), Gaps = 7/216 (3%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           S+ +G     R  ++  +F K+K F C P+   Y T++  L       +A   ++ M   
Sbjct: 91  SICRGYGRVHRPFDSLRVFHKMKDFDCDPSQKAYVTVLAILVEENQLNLAFKFYKNMRE- 149

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                +   P   +   +I  LC+ +G VD   ++FL+M  +  +PD  TY +LI G C 
Sbjct: 150 -----IGLPPTVASLNVLIKALCRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCR 204

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
               +EA  L  EM+++   P VVT+  +++ LC +  +DEA R LE M  +G+ PN  T
Sbjct: 205 FGRIDEAKKLFTEMVEKDCAPTVVTYTSLINGLCGSKNVDEAMRYLEEMKSKGIEPNVFT 264

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +S+LMDG C  GR   A ELF  M + GC+  + +Y
Sbjct: 265 YSSLMDGLCKDGRSLQAMELFEMMMARGCRPNMVTY 300



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 129/266 (48%), Gaps = 15/266 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M+    +P  +T  +L+ G L  +K+ D  +   + + S G+ P+++TY+ 
Sbjct: 209 DEAKKLFTEMVEKDCAPTVVTYTSLING-LCGSKNVDEAMRYLEEMKSKGIEPNVFTYSS 267

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR      +   ++     P+ V +T+LI GLC E +I EA  L  ++   G
Sbjct: 268 LMDGLCKDGRSLQAMELFEMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQG 327

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT-------II 260
            KP+   Y  +I+G C       A N  +EM  G    G+   PN +T+         ++
Sbjct: 328 LKPDAGLYGKVISGFCAISKFREAANFLDEMILG----GIT--PNRLTWNIHVKTSNEVV 381

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC   +  +A  L+L M+ + I+ +V T  SL+   C   ++ +A  L+ E++  G  
Sbjct: 382 RGLCA-NYPSRAFTLYLSMRSRGISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGCI 440

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLL 346
           P   T+ +++        + EAS  L
Sbjct: 441 PSKGTWKLLIGHTLDKTIVGEASDTL 466


>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 557

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 99/340 (29%), Positives = 164/340 (48%), Gaps = 38/340 (11%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  + D ML  R   P + ++ +L     K   Y   + L   + + G  PD+ TYN+++
Sbjct: 175 ALVVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVV 233

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   G  
Sbjct: 234 NGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYP 293

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--------------------- 248
           PNV+T++ LI+ LCR G    A+ + +++     K+G                       
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIP----KYGCTPNSLSYNPILHAFCKQKKMDR 349

Query: 249 ------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                       C P+ V+Y T++  LC+ G VD A EL  Q+KDK   P +++YN++I 
Sbjct: 350 AMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVID 409

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A    EA  LL EM+ +G+QPD++T++ I   LC+  +++EA R    +   G+ P
Sbjct: 410 GLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRP 469

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           NT  ++ ++ G C     ++A +LF+ M S GC     +Y
Sbjct: 470 NTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTY 509



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 148/284 (52%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L   ++  G  P++ T+N+LI+  C+ G V     V
Sbjct: 259 PNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNVVTFNMLISFLCRRGLVEPAMEV 318

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   TP+++++  ++   C + ++  A A    + + GC P++++Y+TL+  LCR
Sbjct: 319 LDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCYPDIVSYNTLLTALCR 378

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ L  ++ +        C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 379 GGEVDAAVELLHQLKDKG------CTPVLISYNTVIDGLTKAGKTKEALELLNEMVTKGL 432

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C  +   EA     ++ D G++P+ V +N I+  LCK  +   A  
Sbjct: 433 QPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAID 492

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   MI  G  PN ST++ L++G    G V  A+EL   + S G
Sbjct: 493 LFIYMISNGCMPNESTYTILIEGLTYEGLVKEARELLGELCSRG 536



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 170/390 (43%), Gaps = 34/390 (8%)

Query: 34  PKSSISKNEPSDPTTTAKLKESLRLTVKDRASLE---------QFLKERCKSSGQGD--- 81
           P  ++S +          L+E+LRL V+  + LE           +K+ C S    +   
Sbjct: 57  PHRAVSNDRLRGLVRRGDLEEALRL-VESMSGLEPSAAPGPCAALIKKLCASGRTAEARR 115

Query: 82  -ITAITPN--------EAFCIFDYMLNMR------PSPPPLTSFNLLFGCLAKTKHYDTV 126
            + A  P+          +C+   +   R      P  P   ++N L   L         
Sbjct: 116 VLAACEPDVMAYNAMVAGYCVTGQLDAARRLVADMPMEPDSYTYNTLIRGLCGRGRTGNA 175

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L +   +   G  PD+ TY IL+   CK         +L  +      PD + +  ++ G
Sbjct: 176 LVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAMKLLDEMRAKGCAPDIITYNVVVNG 235

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           +C E R+ +A      L + GC+PN ++Y+ ++ GLC       A  L  EM+       
Sbjct: 236 ICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKG---- 291

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               PN VT+  +I  LC+ G V+ A E+  Q+      P+ ++YN ++H FC     + 
Sbjct: 292 --YPPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDR 349

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   +  M+ +G  PD+V++N ++  LC+ G++D A  LL  +  +G  P   +++T++D
Sbjct: 350 AMAFVELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVID 409

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G    G+   A EL   M + G +  + +Y
Sbjct: 410 GLTKAGKTKEALELLNEMVTKGLQPDIITY 439



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/253 (31%), Positives = 135/253 (53%), Gaps = 10/253 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG-- 161
           PP + +FN+L   L +    +  + +  ++   G  P+  +YN +++ FCK  ++     
Sbjct: 293 PPNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 352

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           FV L  + R C+ PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+T+I+G
Sbjct: 353 FVEL-MVSRGCY-PDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDG 410

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L + G T  AL L  EM           +P+ +TY+TI  GLC+E  +++A   F +++D
Sbjct: 411 LTKAGKTKEALELLNEMVTKG------LQPDIITYSTISSGLCREDRIEEAIRAFCKVQD 464

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             I P+ V YN+++ G C   + + A  L I M+  G  P+  T+ ++++ L   G + E
Sbjct: 465 MGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTYEGLVKE 524

Query: 342 ASRLLELMILRGV 354
           A  LL  +  RGV
Sbjct: 525 ARELLGELCSRGV 537



 Score = 67.4 bits (163), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/146 (28%), Positives = 64/146 (43%), Gaps = 4/146 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N +   L K       L L   + + GL PD+ TY+ + +  C+  R+      
Sbjct: 399 PVLISYNTVIDGLTKAGKTKEALELLNEMVTKGLQPDIITYSTISSGLCREDRIEEAIRA 458

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      P+ V + +++ GLC       A  LF  + + GC PN  TY+ LI GL  
Sbjct: 459 FCKVQDMGIRPNTVLYNAILLGLCKRRETHNAIDLFIYMISNGCMPNESTYTILIEGLTY 518

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCK 250
            G    A  L  E+ +     GVV K
Sbjct: 519 EGLVKEARELLGELCS----RGVVSK 540


>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
          Length = 897

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 98/328 (29%), Positives = 151/328 (46%), Gaps = 13/328 (3%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            L+ R  S+ QG +        F ++  M++    PP   +F +    L +    D  L+
Sbjct: 124 LLQRRPVSASQGGLPRA---RRFALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALA 180

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           L + +   G  PD   Y  +I+  C  G V+    +L  +L      D   F  +++G+C
Sbjct: 181 LLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMC 240

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              R+ EAA L  ++   GC P V+TY  L+ GLCR            +        G V
Sbjct: 241 GLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRV----------RQADEARAMLGRV 290

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            + N V + T+I G   EG + +A EL+  M  K   PD  TY+ L+HG C       A 
Sbjct: 291 PELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAV 350

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  +G  P+VVT+ +++   CKNG  D+   LLE M  +G+  N+  ++ ++   
Sbjct: 351 RLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYAL 410

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  GR++ A  L   M S GC   + SY
Sbjct: 411 CKDGRMDEAMGLIQEMRSQGCNPDICSY 438



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 141/298 (47%), Gaps = 23/298 (7%)

Query: 112 LLFGCLAKTKHYDTVLS-------------LFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           LL GC A    +D V+              L  R+ + G  P + TY  L+   C++ + 
Sbjct: 221 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 280

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +LGR+       + V F ++I G  AE ++ EA  L+  +   GC+P+  TYS L
Sbjct: 281 DEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 336

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++GLC+ G    A+ L  EM     K G    PN VTYT ++   CK G  D  + L  +
Sbjct: 337 MHGLCKLGRIGSAVRLLREME----KKGFA--PNVVTYTIVLHSFCKNGMWDDTRALLEE 390

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K +  +   YN +I+  C     +EA  L+ EM  QG  PD+ ++N I+  LC N +
Sbjct: 391 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 450

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+EA  + E ++  GV  N  T++T++      GR   A  L   M   GC   V SY
Sbjct: 451 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSY 508



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 110 FN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           FN ++ GCLA+ K  +    L++ +   G  PD +TY+IL++  CK+GR+     +L  +
Sbjct: 298 FNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREM 356

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +  F P+ V +T ++   C      +  AL  ++ A G   N   Y+ +I  LC+ G  
Sbjct: 357 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 416

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ L +EM +        C P+  +Y TII  LC    +++A+ +F  + ++ +  + 
Sbjct: 417 DEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 470

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +TYN++IH       W +A  L  EM+  G   DVV++N ++  +CK+G +D +  LLE 
Sbjct: 471 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 530

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+ PN  +++ L+   C   RV  A EL   M + G    + +Y
Sbjct: 531 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTY 578



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M  ++   P   ++++L   L K     + + L + +   G  P++ TY I+
Sbjct: 313 EATELYETM-GLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 371

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FCK G       +L  +     T ++  +  +I  LC + R+ EA  L  ++++ GC
Sbjct: 372 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 431

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ +Y+T+I  LC       A ++FE +     + GVV   N +TY TII  L ++G 
Sbjct: 432 NPDICSYNTIIYHLCNNEQMEEAEHMFENLL----EEGVVA--NGITYNTIIHALLRDGR 485

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              A  L  +M     + DVV+YN LI   C   + + +  LL EM ++G++P+ V++N+
Sbjct: 486 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 545

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++ ELCK  ++ +A  L + M+ +G+ P+  T++TL++G C  G ++ A  L   + +  
Sbjct: 546 LISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEN 605

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 606 VHPDIITY 613



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            +N +   L K    D  + L + + S G  PD+ +YN +I   C   ++     +   +
Sbjct: 402 GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 461

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L      + + + ++I  L  + R  +A  L  ++   GC  +V++Y+ LI  +C+ G+ 
Sbjct: 462 LEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV 521

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             +L L EEMA          KPN V+Y  +I  LCKE  V  A EL  QM ++ + PD+
Sbjct: 522 DRSLVLLEEMAEKG------IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDI 575

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           VTYN+LI+G C     + A  LL ++ ++ V PD++T+N+++   CK   +D+A+ LL
Sbjct: 576 VTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 633



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 6/211 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +   L   +  +    +F+ L   G+  +  TYN +I+   + GR      +
Sbjct: 433 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 492

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    + D V++  LIK +C +  +  +  L  ++   G KPN ++Y+ LI+ LC+
Sbjct: 493 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 552

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L ++M N          P+ VTY T+I+GLCK G++  A  L  ++ ++N+
Sbjct: 553 ERRVRDALELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 606

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           +PD++TYN LI   C     ++A  LL   M
Sbjct: 607 HPDIITYNILISWHCKVRLLDDAAMLLNRAM 637



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+N+L   L K +     L L K++ + GL PD+ TYN LIN  CKMG +     +L +
Sbjct: 541 VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 600

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +      PD + +  LI   C    + +AA L  +  A  C
Sbjct: 601 LHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 641


>gi|334184106|ref|NP_178323.3| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546751|sp|P0C894.1|PP143_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g02150
 gi|330250459|gb|AEC05553.1| tetratricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 761

 Score =  171 bits (432), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 154/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F  M   R  P    S N L    AK    D V   FK +   G  P ++TYNI
Sbjct: 209 EEAIQCFSKMKRFRVFPKT-RSCNGLLHRFAKLGKTDDVKRFFKDMIGAGARPTVFTYNI 267

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+C CK G V     +   +      PD V + S+I G     R+ +    F ++K   
Sbjct: 268 MIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMC 327

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P+VITY+ LIN  C+ G   + L  + EM  GNG      KPN V+Y+T++D  CKEG
Sbjct: 328 CEPDVITYNALINCFCKFGKLPIGLEFYREM-KGNG-----LKPNVVSYSTLVDAFCKEG 381

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A + ++ M+   + P+  TY SLI   C   + ++A  L  EM+  GV+ +VVT+ 
Sbjct: 382 MMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRLGNEMLQVGVEWNVVTYT 441

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LC   +M EA  L   M   GV PN ++++ L+ GF     ++ A EL   ++  
Sbjct: 442 ALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGR 501

Query: 388 GCKHTVFSY 396
           G K  +  Y
Sbjct: 502 GIKPDLLLY 510



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 160/318 (50%), Gaps = 12/318 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+ A     A  +F+ M   R   P   ++N +     K    D  +  F+ +     
Sbjct: 275 EGDVEA-----ARGLFEEM-KFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 328

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+ TYN LINCFCK G++  G      +  +   P+ V++++L+   C E  + +A  
Sbjct: 329 EPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIK 388

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            +  ++  G  PN  TY++LI+  C+ G      NL +    GN    V  + N VTYT 
Sbjct: 389 FYVDMRRVGLVPNEYTYTSLIDANCKIG------NLSDAFRLGNEMLQVGVEWNVVTYTA 442

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDGLC    + +A+ELF +M    + P++ +YN+LIHGF  A + + A  LL E+  +G
Sbjct: 443 LIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 502

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           ++PD++ +   +  LC   K++ A  ++  M   G+  N+  ++TLMD +  +G      
Sbjct: 503 IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSGNPTEGL 562

Query: 379 ELFVSMESMGCKHTVFSY 396
            L   M+ +  + TV ++
Sbjct: 563 HLLDEMKELDIEVTVVTF 580



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 149/305 (48%), Gaps = 7/305 (2%)

Query: 93  IFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +FD + + R    P    F+ LF  L      +  +  F ++    +FP   + N L++ 
Sbjct: 177 VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMLEEAIQCFSKMKRFRVFPKTRSCNGLLHR 236

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           F K+G+          ++ +   P    +  +I  +C E  +  A  LF ++K  G  P+
Sbjct: 237 FAKLGKTDDVKRFFKDMIGAGARPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPD 296

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY+++I+G  + G     +  FEEM +      + C+P+ +TY  +I+  CK G +  
Sbjct: 297 TVTYNSMIDGFGKVGRLDDTVCFFEEMKD------MCCEPDVITYNALINCFCKFGKLPI 350

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             E + +MK   + P+VV+Y++L+  FC      +A    ++M   G+ P+  T+  ++D
Sbjct: 351 GLEFYREMKGNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 410

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             CK G + +A RL   M+  GV  N  T++ L+DG C   R+  A+ELF  M++ G   
Sbjct: 411 ANCKIGNLSDAFRLGNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIP 470

Query: 392 TVFSY 396
            + SY
Sbjct: 471 NLASY 475



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 149/328 (45%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ L     K       +  +  +   GL P+ YTY  LI+  CK+G +S  F +
Sbjct: 365 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDANCKIGNLSDAFRL 424

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+     + V +T+LI GLC   R+ EA  LF K+   G  PN+ +Y+ LI+G  +
Sbjct: 425 GNEMLQVGVEWNVVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVK 484

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL L  E+  G G      KP+ + Y T I GLC    ++ AK +  +MK+  I
Sbjct: 485 AKNMDRALELLNEL-KGRG-----IKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGI 538

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM----------------------------- 315
             + + Y +L+  +  + +  E   LL EM                              
Sbjct: 539 KANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCKNKLVSKAVD 598

Query: 316 -------DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
                  D G+Q +   F  ++D LCK+ +++ A+ L E M+ +G+ P+ + +++LMDG 
Sbjct: 599 YFNRISNDFGLQANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGN 658

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G V  A  L   M  +G K  + +Y
Sbjct: 659 FKQGNVLEALALRDKMAEIGMKLDLLAY 686



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/291 (27%), Positives = 136/291 (46%), Gaps = 9/291 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N L     K K+ D  L L   L   G+ PDL  Y   I   C + ++    VV
Sbjct: 470 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVV 529

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +       +++ +T+L+          E   L  ++K    +  V+T+  LI+GLC+
Sbjct: 530 MNEMKECGIKANSLIYTTLMDAYFKSGNPTEGLHLLDEMKELDIEVTVVTFCVLIDGLCK 589

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A++ F  ++N    FG+  + N   +T +IDGLCK+  V+ A  LF QM  K +
Sbjct: 590 NKLVSKAVDYFNRISN---DFGL--QANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGL 644

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   Y SL+ G     +  EA  L  +M + G++ D++ +  ++  L    ++ +A  
Sbjct: 645 VPDRTAYTSLMDGNFKQGNVLEALALRDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARS 704

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            LE MI  G++P+     +++      G ++ A EL    +S   KH + +
Sbjct: 705 FLEEMIGEGIHPDEVLCISVLKKHYELGCIDEAVEL----QSYLMKHQLLT 751



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 133/283 (46%), Gaps = 7/283 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L   +       LF ++++ G+ P+L +YN LI+ F K   +     +L 
Sbjct: 437 VVTYTALIDGLCDAERMKEAEELFGKMDTAGVIPNLASYNALIHGFVKAKNMDRALELLN 496

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      PD + + + I GLC+  +I  A  +  ++K  G K N + Y+TL++   ++G
Sbjct: 497 ELKGRGIKPDLLLYGTFIWGLCSLEKIEAAKVVMNEMKECGIKANSLIYTTLMDAYFKSG 556

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNIN 285
           +    L+L +EM   + +  VV      T+  +IDGLCK   V KA + F ++  D  + 
Sbjct: 557 NPTEGLHLLDEMKELDIEVTVV------TFCVLIDGLCKNKLVSKAVDYFNRISNDFGLQ 610

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            +   + ++I G C  N    A  L  +M+ +G+ PD   +  +MD   K G + EA  L
Sbjct: 611 ANAAIFTAMIDGLCKDNQVEAATTLFEQMVQKGLVPDRTAYTSLMDGNFKQGNVLEALAL 670

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            + M   G+  +   +++L+ G     ++  A+     M   G
Sbjct: 671 RDKMAEIGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 713


>gi|357117807|ref|XP_003560653.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g02150-like [Brachypodium distachyon]
          Length = 692

 Score =  171 bits (432), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 157/293 (53%), Gaps = 10/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N +  CLA+ +  +    LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 160 PPNTRTCNHILLCLARERSSELAWRLFEQLPA----PNVFTFNIMIDFLCKEGDLAEARA 215

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L R+     +PD V + SLI G      + E   L  +++  GC+P+V+TY+ L+N  C
Sbjct: 216 LLARMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMRGCGCRPDVVTYNALVNCFC 275

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A + F EM     + GV+   N VT++T +D  CK G V +A +LF QM+ K 
Sbjct: 276 KFGRMERAYSYFAEMK----REGVM--ANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKG 329

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+ VTY  L+ G C A   ++A  L  EM+ QGV  +VVT+ V++D LCK GK+ EA 
Sbjct: 330 MKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAE 389

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  LM   G+  N   ++TL+ G  +      A  L   M+  G +  V  Y
Sbjct: 390 DVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGMELDVSLY 442



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 94/315 (29%), Positives = 156/315 (49%), Gaps = 15/315 (4%)

Query: 87  PNEAFCIFDYM----LNMRPSPPPLTSF-NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           P+ A  + D +    L + P    L S  + L   LA     D  +    R+    + P+
Sbjct: 103 PHLAASLVDLLHRAALALGPRRSALPSVVDTLLSLLADRGLLDDAVLALARVRELRVPPN 162

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
             T N ++ C  +  R S    +  R+      P+   F  +I  LC E  + EA AL  
Sbjct: 163 TRTCNHILLCLAR-ERSSE---LAWRLFEQLPAPNVFTFNIMIDFLCKEGDLAEARALLA 218

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++KA GC P+V+TY++LI+G  + G       L  EM       G  C+P+ VTY  +++
Sbjct: 219 RMKAIGCSPDVVTYNSLIDGYGKCGELEEVEKLVGEMR------GCGCRPDVVTYNALVN 272

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
             CK G +++A   F +MK + +  +VVT+++ +  FC      EA  L  +M  +G++P
Sbjct: 273 CFCKFGRMERAYSYFAEMKREGVMANVVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKP 332

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           + VT+  ++D  CK G++D+A  L   M+ +GV  N  T++ L+DG C  G+V  A+++F
Sbjct: 333 NEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVF 392

Query: 382 VSMESMGCKHTVFSY 396
             ME  G +     Y
Sbjct: 393 RLMERAGIRANELLY 407



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 153/319 (47%), Gaps = 29/319 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + +F+       K       + LF ++   G+ P+  TY  L++  CK GR+    V+  
Sbjct: 299 VVTFSTFVDAFCKNGMVREAMKLFAQMRMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTN 358

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++     + V +T L+ GLC E ++ EA  +F  ++  G + N + Y+TLI+G     
Sbjct: 359 EMVQQGVPLNVVTYTVLVDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYK 418

Query: 227 HTIVALNLFEEMANGNGKFGV---------VC--------------------KPNTVTYT 257
           ++  AL+L  EM +   +  V         +C                    KPN V YT
Sbjct: 419 NSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYT 478

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            I+D   K     +A  L  +M D    P++VTY +L+ G C A   +EA     +M+D 
Sbjct: 479 NIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDL 538

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++P+V  +  ++D LCKNG++D+A  LL+ MI +G++ +    ++LMDG    G +  A
Sbjct: 539 GLEPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDA 598

Query: 378 KELFVSMESMGCKHTVFSY 396
             L   M + G +  ++ Y
Sbjct: 599 FALKAKMINSGLQLDLYGY 617



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 6/267 (2%)

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           K+ +  LSL   +   G+  D+  Y  LI   C + ++     +L ++      P+ V +
Sbjct: 418 KNSERALSLLSEMKDKGMELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIY 477

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           T+++       +  EA AL  K+   G +PN++TY  L++GLC+ G    A++ F +M +
Sbjct: 478 TNIMDACFKARKESEAIALLQKMMDSGFRPNIVTYCALVDGLCKAGSIDEAISHFNKMVD 537

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                G+  +PN   YT ++DGLCK G +DKA  L  +M DK ++ D V   SL+ G   
Sbjct: 538 ----LGL--EPNVQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLK 591

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             +  +A  L  +M++ G+Q D+  +   +   C    + EA  +L  MI  G+ P+   
Sbjct: 592 QGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVV 651

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++ L++     G +  A  L   MES+
Sbjct: 652 YNCLINKCQKLGNMEEAAILQNEMESL 678



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 42/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M  M+   P   ++  L     K    D  L L   +   G+  ++ TY +L
Sbjct: 317 EAMKLFAQM-RMKGMKPNEVTYTCLVDGTCKAGRLDDALVLTNEMVQQGVPLNVVTYTVL 375

Query: 149 INCFCKMGRVS-------------------------HGFVV----------LGRILRSCF 173
           ++  CK G+V+                         HG  V          L  +     
Sbjct: 376 VDGLCKEGKVAEAEDVFRLMERAGIRANELLYTTLIHGHFVYKNSERALSLLSEMKDKGM 435

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
             D   + +LI GLC   ++ EA +L  K+   G KPN + Y+ +++   +      A+ 
Sbjct: 436 ELDVSLYGALIWGLCNLQKLDEAKSLLNKMDECGLKPNNVIYTNIMDACFKARKESEAIA 495

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L ++M +         +PN VTY  ++DGLCK G +D+A   F +M D  + P+V  Y +
Sbjct: 496 LLQKMMDSG------FRPNIVTYCALVDGLCKAGSIDEAISHFNKMVDLGLEPNVQAYTA 549

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+ G C     ++A  LL EM+D+G+  D V    +MD   K G + +A  L   MI  G
Sbjct: 550 LVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTSLMDGHLKQGNLQDAFALKAKMINSG 609

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +   ++  + GFC    +  A+E+   M   G       Y
Sbjct: 610 LQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENGITPDAVVY 652



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 65/151 (43%), Gaps = 1/151 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA   F+ M+++   P  + ++  L   L K    D  + L   +   G+  D      
Sbjct: 526 DEAISHFNKMVDLGLEPN-VQAYTALVDGLCKNGRLDKAVLLLDEMIDKGMSLDNVVCTS 584

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K G +   F +  +++ S    D   +T  + G C  + I EA  + +++   G
Sbjct: 585 LMDGHLKQGNLQDAFALKAKMINSGLQLDLYGYTCFVWGFCNLNMIQEAREVLSEMIENG 644

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
             P+ + Y+ LIN   + G+   A  L  EM
Sbjct: 645 ITPDAVVYNCLINKCQKLGNMEEAAILQNEM 675


>gi|410109945|gb|AFV61052.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rubella]
          Length = 394

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +  +G    LY +NIL++ FCK   +     V   I +    P 
Sbjct: 99  LMKLKYFKLVWGFYKEILESGYPASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPS 158

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 219 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIY 272

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 273 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRL 332

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 333 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDARTY 372



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 150/278 (53%), Gaps = 6/278 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K +      S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKERDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 181 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +AL ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 241 KNGRVDLALEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 294

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 295 LKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 354

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           ++L  M+  G+ P+  T++ +++ FC  G V    +L 
Sbjct: 355 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLL 392



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 94/282 (33%), Positives = 147/282 (52%), Gaps = 19/282 (6%)

Query: 66  LEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
           + +F KER     Q    AIT             +RPS   + S+N L     +    D 
Sbjct: 131 MHRFCKERDIRVAQSVFDAITK----------WGLRPS---VVSYNTLMNGYIRLGDLDE 177

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
              L   ++++G+ PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI 
Sbjct: 178 GFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLID 237

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C   R+  A  ++ ++ +    P++ITY+TLI GLC+ G    A +L +EM+      
Sbjct: 238 GHCKNGRVDLALEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG--- 294

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
               KP+ +TYT +IDG CKEG +D A E   +M  +NI  D V Y +LI G C      
Sbjct: 295 ---LKPDKITYTALIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSV 351

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +A  +L EM+  G++PD  T+ +I++E CK G + + S+LL+
Sbjct: 352 DAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLK 393



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 64/209 (30%), Positives = 102/209 (48%), Gaps = 6/209 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    D    LF  +   GL P+  T+  LI+  CK GRV     +
Sbjct: 192 PDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLALEI 251

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L     PD + + +LI GLC +  + +A  L  ++   G KP+ ITY+ LI+G C+
Sbjct: 252 YKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKPDKITYTALIDGCCK 311

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    + M   N       + + V YT +I GLC+EG    A+++  +M    +
Sbjct: 312 EGDLDTAFEHRKRMIQEN------IRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGL 365

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            PD  TY  +I+ FC   D  + + LL E
Sbjct: 366 KPDARTYTMIINEFCKKGDVWKGSKLLKE 394



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 72/148 (48%), Gaps = 1/148 (0%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 248 ALEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKITYTALI 306

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 307 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 366

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEE 237
           P+  TY+ +IN  C+ G       L +E
Sbjct: 367 PDARTYTMIINEFCKKGDVWKGSKLLKE 394


>gi|255660820|gb|ACU25579.1| pentatricopeptide repeat-containing protein [Mulguraea
           asparagoides]
          Length = 418

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + ++A G +P+V T+S LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM B     G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 231 EMLBN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +   L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQXXDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/256 (33%), Positives = 138/256 (53%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   + ++G+ PD+YT+++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTHSVLINGLCKESKMDDANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 229 FDEMLBNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G      +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 289 KGDLKQXXDLIDEMSMKG------LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D   Y +LI G C      +A  +L EM+  G++P++ T+ +I++E CK G +   S+
Sbjct: 343 RLDDXAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           LL+ M   G  PN  T
Sbjct: 403 LLKEMQRXGYXPNXVT 418



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 146/285 (51%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHNFCKEGEIRLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD    + LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSVMQASGVQPDVYTHSVLINGLCKESKMDDANELFDEMLBNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++ +M + +        P+ +TY T+I GLCK+G + +  +L  +M  K 
Sbjct: 253 KNGRVDLAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQXXDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D   +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDXAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRXG 411


>gi|410109943|gb|AFV61051.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rotundifolia]
          Length = 425

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEDILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 285 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTY 384



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 229 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 289 KGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD+ T+ +I++E CK G + + S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 402

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 403 LLKEMQRNGHAPSVVTYNVLMNG 425



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 367 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTY 419



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 71/167 (42%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 319 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 379 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 425


>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
          Length = 609

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 165/328 (50%), Gaps = 15/328 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
           +++  CK SG G        +A  + D M N + S P + ++N+L   + K    D  + 
Sbjct: 88  YVQTTCKESGVG--------QAMKLLDEMRN-KGSKPDVVTYNVLINGICKEGRLDEAIK 138

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
               + S G  P++ T+NI++   C  GR      +L  +LR   +P  V F  LI  LC
Sbjct: 139 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLC 198

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +  +  A  +  K+   GC PN ++Y+ L++G C+      A+   + M +        
Sbjct: 199 RQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRG------ 252

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P+ VTY T++  LCK+G VD A E+  Q+  K  +P ++TYN++I G         A 
Sbjct: 253 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAI 312

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM  +G++PD++T++ ++  L + GK+DEA +    +   G+ PN  T++++M G 
Sbjct: 313 KLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGL 372

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C + + + A +    M S  CK T  +Y
Sbjct: 373 CKSRQTDRAIDFLAYMISKRCKPTEATY 400



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 151/290 (52%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L+ F+       K       + L   + + G  PD+ TYN+LIN  CK GR+      L 
Sbjct: 82  LSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLN 141

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      P+ +    +++ +C+  R M+A  L + +   GC P+V+T++ LIN LCR G
Sbjct: 142 NMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQG 201

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+++ E+M          C PN+++Y  ++ G CKE  +D+A E    M  +   P
Sbjct: 202 LLGRAIDILEKMPMHG------CTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYP 255

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTYN+L+   C     + A  +L ++  +G  P ++T+N ++D L K GK + A +LL
Sbjct: 256 DIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLL 315

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  +G+ P+  T+S+L+ G    G+V+ A + F  +E +G +    +Y
Sbjct: 316 DEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITY 365



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 151/294 (51%), Gaps = 9/294 (3%)

Query: 98  LNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           LN  PS    P + + N++   +  T  +     L   +   G  P + T+NILIN  C+
Sbjct: 140 LNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCR 199

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G +     +L ++     TP+++++  L+ G C E ++  A      + + GC P+++T
Sbjct: 200 QGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVT 259

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TL+  LC+ G   VA+ +  ++++        C P  +TY T+IDGL K G  ++A +
Sbjct: 260 YNTLLTALCKDGKVDVAVEILNQLSSKG------CSPVLITYNTVIDGLSKVGKTERAIK 313

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L  +M+ K + PD++TY+SL+ G       +EA     ++   G++P+ +T+N IM  LC
Sbjct: 314 LLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLC 373

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           K+ + D A   L  MI +   P  +T++ L++G    G    A +L   + S G
Sbjct: 374 KSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRG 427



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 136/257 (52%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       + + +++   G  P+  +YN L++ FCK  ++      
Sbjct: 185 PSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEY 244

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V + +L+  LC + ++  A  +  +L + GC P +ITY+T+I+GL 
Sbjct: 245 LDIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLS 303

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A+ L +EM           KP+ +TY++++ GL +EG VD+A + F  ++   
Sbjct: 304 KVGKTERAIKLLDEMRRKG------LKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLG 357

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ +TYNS++ G C +   + A   L  M+ +  +P   T+ ++++ +   G   EA 
Sbjct: 358 IRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEAL 417

Query: 344 RLLELMILRGVNPNTST 360
            LL  +  RG+   +S 
Sbjct: 418 DLLNELCSRGLVKKSSA 434


>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
 gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
          Length = 628

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 111/358 (31%), Positives = 163/358 (45%), Gaps = 49/358 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF  M       P + +FN L   L   +       LF+ +   G  P++ +Y+ 
Sbjct: 125 DDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYST 184

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK GR+     +   ++     PD VA+TS + GLC  +R+ EA     K+   G
Sbjct: 185 LLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKG 244

Query: 208 CKPNVITYSTLINGLCRTGHTIVALN-----------------LFEEMANGNGK------ 244
            K + + +ST+I  LC+ GH   A N                  FEEM + N        
Sbjct: 245 SKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELF 304

Query: 245 ---FGVVCK-----------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                 VCK                       PN  TY  ++D LCK   +D+A+EL  +
Sbjct: 305 NTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNE 364

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M +  ++PDVVTY++L+ G C     + A  LL EM  +GV PD  T   I++ L K GK
Sbjct: 365 MANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGK 424

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +D A   LE M  RG  P+  T++TL+DG C  GR++ A      M +  C   VFSY
Sbjct: 425 VDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSY 482



 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/313 (30%), Positives = 160/313 (51%), Gaps = 24/313 (7%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD++   +     + ++N     LAK          F+++   G  PD +TY+I++   
Sbjct: 24  LFDWLGRQKGYQHSVFTYNCFLDALAKANAGQLAYEKFQQMQRRGYPPDDFTYSIVLRGL 83

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPN 211
           CK G +     +LG++  S    + + ++ +I G C  SR+ +A  +F  + A  GC P+
Sbjct: 84  CKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKASRVDDALEIFKTMSAGGGCVPD 143

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+T+++L+ GLC       A  LFE MA         C+PN ++Y+T++DGLCK G +D+
Sbjct: 144 VVTFNSLLKGLCSGERMSEAFVLFEYMAKAG------CEPNVISYSTLLDGLCKAGRLDE 197

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF----- 326
           A  L+ +M +K+  PD+V Y S + G C AN   EA     +M+ +G + D V F     
Sbjct: 198 ACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIG 257

Query: 327 ------------NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
                       N +++ LC++G +DEA +  E MI R   P+   F+TL+   C + R+
Sbjct: 258 ILCKKGHAEEAQNQMIEHLCRSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRL 317

Query: 375 NHAKELFVSMESM 387
                LF  M+SM
Sbjct: 318 PDGVLLFQRMKSM 330



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 154/313 (49%), Gaps = 15/313 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF---PDLYT 144
           +EA   F+ M++ R  PP    FN L   + K+K     + LF+R+ S   F   P+L T
Sbjct: 283 DEACKTFEEMIS-RNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNLET 341

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           YNI+++  CK  ++     ++  +     +PD V +++L+ GLC   ++  A  L  ++ 
Sbjct: 342 YNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRACDLLEEMS 401

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGL 263
             G  P+  T ++++N L + G    AL+  E M A G+        P+ VTY T++DGL
Sbjct: 402 KEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGS-------TPDLVTYNTLLDGL 454

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G +D+A     +M      PDV +Y  +I   C +     A+ +  EM+ +GV PD 
Sbjct: 455 CKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRGVLPDT 514

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V ++ ++D L +NG  D A   LEL+      P+      ++DG C  G+   A E+   
Sbjct: 515 VLYHSLLDGLARNGLEDLA---LELLKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVER 571

Query: 384 MESMGCKHTVFSY 396
           M   G     F+Y
Sbjct: 572 MADAGFPADAFTY 584



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/291 (28%), Positives = 147/291 (50%), Gaps = 13/291 (4%)

Query: 93  IFDYMLNMRP--SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           +F  M +M+    PP L ++N++   L K K  D    L   + + GL PD+ TY+ L++
Sbjct: 323 LFQRMKSMKEFYCPPNLETYNIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVD 382

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             CK+G++     +L  + +    PD+    S++  L    ++  A +    +KA G  P
Sbjct: 383 GLCKLGKLDRACDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTP 442

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +++TY+TL++GLC+ G    A+    +M          C P+  +YT II  LC+ G   
Sbjct: 443 DLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK------CTPDVFSYTIIITALCRSGQAA 496

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTFNVI 329
            A  +F +M  + + PD V Y+SL+ G       N    L +E++   + +PD V   ++
Sbjct: 497 GAHAIFQEMVKRGVLPDTVLYHSLLDGLAR----NGLEDLALELLKTSLCKPDFVMHKMV 552

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           +D LCK GK ++A  ++E M   G   +  T+  ++ G    G+V+ A++L
Sbjct: 553 VDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQL 603



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 154/356 (43%), Gaps = 62/356 (17%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +F+YM       P + S++ L   L K    D    L++ +      PDL  Y  
Sbjct: 161 SEAFVLFEYMAKA-GCEPNVISYSTLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTS 219

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS------------------------- 182
            +   CK  RV+       +++      DAVAF++                         
Sbjct: 220 FVTGLCKANRVAEACDCCRKMVTKGSKADAVAFSTVIGILCKKGHAEEAQNQMIEHLCRS 279

Query: 183 ---------------------------LIKGLCAESRIMEAAALFTKLKA---FGCKPNV 212
                                      LI  +C   R+ +   LF ++K+   F C PN+
Sbjct: 280 GMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKSKRLPDGVLLFQRMKSMKEFYCPPNL 339

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+ +++ LC+      A  L  EMAN    +G+   P+ VTY+ ++DGLCK G +D+A
Sbjct: 340 ETYNIMVDNLCKAKQLDEAQELVNEMAN----YGL--SPDVVTYSALVDGLCKLGKLDRA 393

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L  +M  + + PD  T  S+++    A   + A   L  M  +G  PD+VT+N ++D 
Sbjct: 394 CDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDG 453

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LCK G++DEA   L  M+     P+  +++ ++   C +G+   A  +F  M   G
Sbjct: 454 LCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQAAGAHAIFQEMVKRG 509



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/260 (32%), Positives = 132/260 (50%), Gaps = 10/260 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + + M N   SP  +T   L+ G L K    D    L + ++  G+FPD +T   
Sbjct: 356 DEAQELVNEMANYGLSPDVVTYSALVDG-LCKLGKLDRACDLLEEMSKEGVFPDSFTDAS 414

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N   K G+V +    L  +     TPD V + +L+ GLC   RI EA     K+ A  
Sbjct: 415 ILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAK 474

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V +Y+ +I  LCR+G    A  +F+EM     K GV+  P+TV Y +++DGL + G
Sbjct: 475 CTPDVFSYTIIITALCRSGQAAGAHAIFQEMV----KRGVL--PDTVLYHSLLDGLARNG 528

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A EL   +K     PD V +  ++ G C A    +A  ++  M D G   D  T+ 
Sbjct: 529 LEDLALEL---LKTSLCKPDFVMHKMVVDGLCKAGKAEDACEVVERMADAGFPADAFTYI 585

Query: 328 VIMDELCKNGKMDEASRLLE 347
            ++  L K GK+D+A +L++
Sbjct: 586 NVVRGLRKLGKVDKARQLVD 605



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 54/183 (29%), Positives = 92/183 (50%), Gaps = 6/183 (3%)

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ +   L   G     + LF+ +    G      + +  TY   +D L K      A E
Sbjct: 5   YTVVGEVLRHLGKISTIVRLFDWLGRQKGY-----QHSVFTYNCFLDALAKANAGQLAYE 59

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
            F QM+ +   PD  TY+ ++ G C A + ++A  LL ++ + GV+ +V+T++V++D  C
Sbjct: 60  KFQQMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCC 119

Query: 335 KNGKMDEASRLLELMIL-RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           K  ++D+A  + + M    G  P+  TF++L+ G C   R++ A  LF  M   GC+  V
Sbjct: 120 KASRVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNV 179

Query: 394 FSY 396
            SY
Sbjct: 180 ISY 182



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 32/175 (18%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R S P L ++N L   L K    D  ++   ++ +    PD+++Y I+I   C+ G+
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSL--------------------------------IK 185
            +    +   +++    PD V + SL                                + 
Sbjct: 495 AAGAHAIFQEMVKRGVLPDTVLYHSLLDGLARNGLEDLALELLKTSLCKPDFVMHKMVVD 554

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           GLC   +  +A  +  ++   G   +  TY  ++ GL + G    A  L ++ + 
Sbjct: 555 GLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGKVDKARQLVDDASE 609


>gi|297833514|ref|XP_002884639.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330479|gb|EFH60898.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 864

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 100/309 (32%), Positives = 150/309 (48%), Gaps = 9/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +FD M       P   S+++L   L +    +    L  ++   G  P   TY +
Sbjct: 247 RDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTV 306

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C  G +   F +   ++     P+   +T LI GLC + +I EA  +  K+   G
Sbjct: 307 LIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDG 366

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+VITY+ LING C+ G  + A  L   M          CKPN  T+  +++GLC+ G
Sbjct: 367 IFPSVITYNALINGYCKDGRVVPAFELLTVMEKR------ACKPNVRTFNELMEGLCRVG 420

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              KA  L  +M D  ++PD+V+YN LI G C     N A  LL  M    ++PD +TF 
Sbjct: 421 KPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFT 480

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA---KELFVSM 384
            I++  CK GK D AS  L LM+ +G++ +  T +TL+DG C  G+   A    E  V M
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKM 540

Query: 385 ESMGCKHTV 393
             +   H++
Sbjct: 541 RMLTTPHSL 549



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 91/268 (33%), Positives = 138/268 (51%), Gaps = 7/268 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           ++R+ + G    +  Y  ++N  CK G      + + +IL+  F  D+   TSL+ G C 
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCR 242

Query: 190 ESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              + +A  +F  +   G C PN ++YS LI+GLC  G    A  L ++M    G+ G  
Sbjct: 243 GLNLRDALKVFDLMSREGTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQM----GEKG-- 296

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C+P+T TYT +I  LC  G +DKA  LF +M  +   P+V TY  LI G C      EAN
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  +M+  G+ P V+T+N +++  CK+G++  A  LL +M  R   PN  TF+ LM+G 
Sbjct: 357 GVCRKMVKDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G+   A  L   M   G    + SY
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSY 444



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 166/344 (48%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +FD M+  R   P + ++ +L   L +    +    + +++   G+FP + TYN 
Sbjct: 318 DKAFNLFDEMI-ARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDGIFPSVITYNA 376

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK GRV   F +L  + +    P+   F  L++GLC   +  +A  L  ++   G
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++++Y+ LI+GLCR GH  VA  L   M + +       +P+ +T+T II+  CK+G
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNVAYKLLTSMNSFD------LEPDCLTFTAIINAFCKQG 490

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL---------------- 311
             D A      M  K I+ D VT  +LI G C      +A  +L                
Sbjct: 491 KADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLN 550

Query: 312 --IEMMDQGVQ-----------------PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
             ++M+ +G +                 P VVT+  ++D L ++G +  + R+LELM L 
Sbjct: 551 VILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGSFRMLELMKLS 610

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G  PN   ++ +++G C  GRV  A++L  +M+  G      +Y
Sbjct: 611 GCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/329 (28%), Positives = 148/329 (44%), Gaps = 39/329 (11%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + +FN L   L +       + L KR+   GL PD+ +YN+LI+  C+ G
Sbjct: 396 VMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREG 455

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            ++  + +L  +      PD + FT++I   C + +   A+A    +   G   + +T +
Sbjct: 456 HMNVAYKLLTSMNSFDLEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGT 515

Query: 217 TLINGLCRTGHTIVALNLFE-------------------------------EMANGNGKF 245
           TLI+G+C  G T  AL + E                                M     K 
Sbjct: 516 TLIDGVCNVGKTRDALFILETLVKMRMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKL 575

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G+V  P+ VTYTT++DGL + G +  +  +   MK     P+V  Y  +I+G C      
Sbjct: 576 GLV--PSVVTYTTLVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVE 633

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           EA  LL  M D GV P+ VT+ V++     NGK+D A   +  M+ RG   N   +S+L+
Sbjct: 634 EAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLL 693

Query: 366 DGFCLTGRVNHA------KELFVSMESMG 388
            GF L+ +          KEL   +E +G
Sbjct: 694 RGFVLSQKGIRETDPECIKELISVVEQLG 722



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-YNILINCFCKMGRVSHGFVVLGRILR 170
           L+  C    K    ++S F  L     F   Y  Y+ L+    K+      +V   R+  
Sbjct: 129 LIRECSRCEKEMLKLISCFDELREVSGFRLNYPCYSSLLMSLAKLDLGFLAYVTYRRMEA 188

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
             F    + + +++  LC       A     K+   G   +    ++L+ G CR  +   
Sbjct: 189 DGFVVGMIDYRTIVNALCKNGYTEAAEMFMCKILKVGFLLDSHIVTSLLLGFCRGLNLRD 248

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL +F+ M+         C PN+V+Y+ +I GLC+ G +++A  L  QM +K   P   T
Sbjct: 249 ALKVFDLMSREG-----TCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRT 303

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y  LI   C     ++A  L  EM+ +G +P+V T+ V++D LC++GK++EA+ +   M+
Sbjct: 304 YTVLIKALCDRGLIDKAFNLFDEMIARGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMV 363

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+ P+  T++ L++G+C  GRV  A EL   ME   CK  V ++
Sbjct: 364 KDGIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTF 409



 Score =  114 bits (285), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 150/358 (41%), Gaps = 83/358 (23%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +   ML+   SP  + S+N+L   L +  H +    L   +NS  L PD  T+ 
Sbjct: 422 PYKAVHLLKRMLDNGLSPD-IVSYNVLIDGLCREGHMNVAYKLLTSMNSFDLEPDCLTFT 480

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC------------------ 188
            +IN FCK G+       LG +LR   + D V  T+LI G+C                  
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCNVGKTRDALFILETLVKM 540

Query: 189 -----------------AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
                               ++ E  A+  K+   G  P+V+TY+TL++GL R+G    +
Sbjct: 541 RMLTTPHSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDISGS 600

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             + E M          C PN   YT II+GLC+ G V++A++L   M+D  ++P+ VTY
Sbjct: 601 FRMLELMKLSG------CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQ------------------------PDVVTFN 327
             ++ G+      + A   +  M+++G +                        P+ +   
Sbjct: 655 TVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRETDPECIKEL 714

Query: 328 V----------------IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +                ++  LCK G+ DE++ L++ ++  GV    +    +M+ +C
Sbjct: 715 ISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEKA-IDIIMESYC 771



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 119/302 (39%), Gaps = 37/302 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  I + ++ MR    P  S N++   L+K       L++  ++N  GL P + TY  
Sbjct: 528 RDALFILETLVKMRMLTTP-HSLNVILDMLSKGCKLKEELAMLGKINKLGLVPSVVTYTT 586

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   + G +S  F +L  +  S   P+   +T +I GLC   R+ EA  L + ++  G
Sbjct: 587 LVDGLIRSGDISGSFRMLELMKLSGCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSG 646

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF----------GVVCKPNTVTYT 257
             PN +TY+ ++ G    G    AL     M     +           G V     +  T
Sbjct: 647 VSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLRGFVLSQKGIRET 706

Query: 258 T------------------------IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
                                    ++  LCKEG  D++  L   +    +  +    + 
Sbjct: 707 DPECIKELISVVEQLGGSTSGLCIFLVTRLCKEGRTDESNGLVQTILKSGVFLEKAI-DI 765

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL-LELMILR 352
           ++  +C      +   L+  ++  G  P   +F +++  L K G  + A  L +EL+   
Sbjct: 766 IMESYCSKKKHTKCVELITLVLKSGFVPSFKSFCLVIQGLKKEGDTERARELVMELLTSN 825

Query: 353 GV 354
           GV
Sbjct: 826 GV 827


>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
 gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
          Length = 775

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 143/283 (50%), Gaps = 7/283 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFV 163
           P +  +N L   L K       L L +R+ S  G  PD  TYN LI+ FCK G +  G  
Sbjct: 381 PDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKE 440

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   + +    P+ V   +L+ G+C   R+  A   F + +  G K + +TY+ LIN  C
Sbjct: 441 LFDEMNKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFC 500

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
              +   A+ LF EM          C P+ + Y T+I G  + G +  A  +  ++K   
Sbjct: 501 NVNNFEKAMELFNEMLKSG------CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLG 554

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I PD V YN+LI GFC  N ++    +L EM + G++PD +T+N ++    KNG +  A 
Sbjct: 555 IRPDTVCYNTLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQ 614

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +++  MI  GV P  +T+  +++ +CL G  N A E+F  M++
Sbjct: 615 KVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKA 657



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/318 (30%), Positives = 161/318 (50%), Gaps = 16/318 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N  + +F  M+ +          +LL G LA+  +++ +  L +++    + P++ T+ I
Sbjct: 287 NRGWDLFTEMIKLGAVLESAACNSLLTG-LAREGNFNRMNELMEKMVEMDIQPNVVTFGI 345

Query: 148 LINCFCKMGRVSHGFVVLGRI--------LRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           LIN  CK  RV     VL ++        +     PD V + +LI GLC   R  E   L
Sbjct: 346 LINHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGL 405

Query: 200 FTKLKAF-GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
             ++++  GC P+ ITY+ LI+G C+ G       LF+EM     K GV   PN VT  T
Sbjct: 406 MERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEM----NKEGVA--PNVVTVNT 459

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ G+C+ G V  A   F++ + + +  D VTY +LI+ FC  N++ +A  L  EM+  G
Sbjct: 460 LVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSG 519

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PD + +  ++    + G+M +AS +L  +   G+ P+T  ++TL+ GFC T + +   
Sbjct: 520 CSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDTVCYNTLIGGFCRTNKFHRVF 579

Query: 379 ELFVSMESMGCKHTVFSY 396
           E+   ME  G K    +Y
Sbjct: 580 EMLKEMEEAGLKPDTITY 597



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/277 (30%), Positives = 141/277 (50%), Gaps = 8/277 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M N     P + + N L G + +T    + ++ F      G+  D  TY  LIN F
Sbjct: 441 LFDEM-NKEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTALINAF 499

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C +        +   +L+S  +PDA+ + +LI G     R+ +A+ +  +LK  G +P+ 
Sbjct: 500 CNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKLGIRPDT 559

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+TLI G CRT        + +EM           KP+T+TY T+I    K G +  A
Sbjct: 560 VCYNTLIGGFCRTNKFHRVFEMLKEMEEAG------LKPDTITYNTLIAYASKNGDLKFA 613

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMD 331
           +++  +M    + P V TY ++I+ +C   + NEA  +  +M     V P+ V +N++++
Sbjct: 614 QKVMRKMIKAGVVPTVATYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILIN 673

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LCKN K+  A  L+E M + GV PNT+T++ +  G 
Sbjct: 674 SLCKNNKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGL 710



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 141/301 (46%), Gaps = 9/301 (2%)

Query: 105 PPLTSFNLLFGCLAKTKH------YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           P   + ++LF  L K +        D +++L  +    G+    +    LI   C+  + 
Sbjct: 227 PNDATGDILFSFLLKRERNEELLSEDEIVNLVLKFGEHGVLISSFWMGRLITRLCRNRKT 286

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           + G+ +   +++     ++ A  SL+ GL  E        L  K+     +PNV+T+  L
Sbjct: 287 NRGWDLFTEMIKLGAVLESAACNSLLTGLAREGNFNRMNELMEKMVEMDIQPNVVTFGIL 346

Query: 219 INGLCRTGHTIVALNLFEEMANG--NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           IN +C+      AL + E+M+ G  +G   V  +P+ V Y T+IDGLCK G   +   L 
Sbjct: 347 INHMCKFRRVDDALEVLEKMSGGKESGGISVSVEPDVVIYNTLIDGLCKVGRQQEGLGLM 406

Query: 277 LQMK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
            +M+  K   PD +TYN LI GFC A +  +   L  EM  +GV P+VVT N ++  +C+
Sbjct: 407 ERMRSQKGCAPDTITYNCLIDGFCKAGEIEKGKELFDEMNKEGVAPNVVTVNTLVGGMCR 466

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            G++  A         RG+  +  T++ L++ FC       A ELF  M   GC      
Sbjct: 467 TGRVSSAVNFFVEAQRRGMKGDAVTYTALINAFCNVNNFEKAMELFNEMLKSGCSPDAIV 526

Query: 396 Y 396
           Y
Sbjct: 527 Y 527



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/260 (26%), Positives = 115/260 (44%), Gaps = 10/260 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT--VLSLFKRLNSTGLFPDLYTYN 146
           +A  +F+ ML    SP  +  + L+ G     +  D   VL+  K+L   G+ PD   YN
Sbjct: 507 KAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFVLAELKKL---GIRPDTVCYN 563

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI  FC+  +    F +L  +  +   PD + + +LI        +  A  +  K+   
Sbjct: 564 TLIGGFCRTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKA 623

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P V TY  +IN  C  G+   A+ +F++M     K      PNTV Y  +I+ LCK 
Sbjct: 624 GVVPTVATYGAVINAYCLNGNGNEAMEIFKDM-----KAASKVPPNTVIYNILINSLCKN 678

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V  A  L   MK   + P+  TYN++  G     D  +    +  M++    PD +T 
Sbjct: 679 NKVKSAVSLMEDMKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITM 738

Query: 327 NVIMDELCKNGKMDEASRLL 346
            ++ + L   G+++   + +
Sbjct: 739 EILTEWLSAVGEIERLKKFV 758


>gi|410109903|gb|AFV61031.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           montevidensis]
          Length = 431

 Score =  170 bits (431), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 154/280 (55%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN+VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK+G +D A    + MI      
Sbjct: 291 GLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  G+   A+++   M S+G K    +Y
Sbjct: 351 DDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTY 390



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES+I +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ +  + D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P++V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CK+G +D A E   +M  +N 
Sbjct: 295 KGDLKQAHHLIDEMSMKG------LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENT 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 266 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D V +T+LI GLC E + ++A  +  ++ + G K
Sbjct: 325 DGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGQSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Glycine max]
          Length = 1024

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 153/303 (50%), Gaps = 12/303 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +    LF+ +   G+ P +YTY ILI+ FCK G +      
Sbjct: 451 PDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNW 510

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR   TP+ V +TSLI       ++ +A  LF  +   G KPNV+TY+ LI+G C+
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCK 570

Query: 225 TGHTIVALNLFEEMANGNGKFGVV----------CK-PNTVTYTTIIDGLCKEGFVDKAK 273
            G    A  ++  M  G+ +   +          C+ PN +TY  ++DGLCK   V++A 
Sbjct: 571 AGQIDKACQIYARM-QGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           EL   M      P+ + Y++LI GFC       A  + ++M ++G  P++ T++ +++ L
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSL 689

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K  ++D   ++L  M+     PN   ++ ++DG C  G+   A  L + ME +GC   V
Sbjct: 690 FKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGCYPNV 749

Query: 394 FSY 396
            +Y
Sbjct: 750 ITY 752



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 153/319 (47%), Gaps = 23/319 (7%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD ML    +P  +T  +L+   L   K +D    LF+ +   G  P++ TY  LI+  C
Sbjct: 511 FDEMLRDNCTPNVVTYTSLIHAYLKARKVFDAN-KLFEMMLLEGSKPNVVTYTALIDGHC 569

Query: 154 KMGRVSHGFVVLGRIL----------------RSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           K G++     +  R+                   C TP+ + + +L+ GLC  +R+ EA 
Sbjct: 570 KAGQIDKACQIYARMQGDIESSDIDMYFKLDDNDCETPNIITYGALVDGLCKANRVEEAH 629

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            L   +   GC+PN I Y  LI+G C+TG    A  +F +M+         C PN  TY+
Sbjct: 630 ELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERG-----YC-PNLYTYS 683

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           ++I+ L KE  +D   ++  +M + +  P+VV Y  +I G C      EA  L+++M + 
Sbjct: 684 SLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEV 743

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P+V+T+  ++D   K GK+++   L   M  +G  PN  T+  L++  C TG ++ A
Sbjct: 744 GCYPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEA 803

Query: 378 KELFVSMESMGCKHTVFSY 396
             L   M+       + SY
Sbjct: 804 HRLLDEMKQTYWPRHISSY 822



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 146/301 (48%), Gaps = 17/301 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M ++    P    ++ L     KT   +    +F +++  G  P+LYTY+ L
Sbjct: 627 EAHELLDTM-SVNGCEPNQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSL 685

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN   K  R+     VL ++L +  TP+ V +T +I GLC   +  EA  L  K++  GC
Sbjct: 686 INSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKMEEVGC 745

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNVITY+ +I+G  + G     L L+ +M +        C PN +TY  +I+  C  G 
Sbjct: 746 YPNVITYTAMIDGFGKIGKIEQCLELYRDMCSKG------CAPNFITYRVLINHCCSTGL 799

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  L  +MK       + +Y  +I GF    ++  +  LL E+ +    P    + +
Sbjct: 800 LDEAHRLLDEMKQTYWPRHISSYRKIIEGF--NREFITSIGLLDELSENESVPVESLYRI 857

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNP-----NTSTFSTLMDGFCLTGRVNHAKELFVS 383
           ++D   K G+++ A  LLE +     +P     N   +++L++      +V+ A EL+ S
Sbjct: 858 LIDNFIKAGRLEGALNLLEEI---SSSPSLAVANKYLYTSLIESLSHASKVDKAFELYAS 914

Query: 384 M 384
           M
Sbjct: 915 M 915



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/361 (24%), Positives = 147/361 (40%), Gaps = 51/361 (14%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +L  F    CK+   GD  ++   E F             P    +N +   L +  
Sbjct: 239 DGCTLGCFAYSLCKAGRCGDALSLLEKEEFV------------PDTVFYNRMVSGLCEAS 286

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            +   + +  R+ S    P++ TY IL++     G++     +L  ++     P+   F 
Sbjct: 287 LFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFN 346

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA--LNLFEEMA 239
           SL+   C       A  LF K+   GC+P  + Y+  I  +C       +  L L E+  
Sbjct: 347 SLVHAYCKSRDYSYAYKLFKKMIKCGCQPGYLLYNIFIGSICSNEELPGSDLLELAEKAY 406

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           +     GVV   N V  +     LC  G  DKA E+  +M  K   PD  TY+ +I   C
Sbjct: 407 SEMLDLGVVL--NKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLC 464

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG---------------------- 337
            A+   +A  L  EM   G+ P V T+ +++D  CK G                      
Sbjct: 465 DASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKAGLIQQARNWFDEMLRDNCTPNVV 524

Query: 338 -------------KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
                        K+ +A++L E+M+L G  PN  T++ L+DG C  G+++ A +++  M
Sbjct: 525 TYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVTYTALIDGHCKAGQIDKACQIYARM 584

Query: 385 E 385
           +
Sbjct: 585 Q 585



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 161/385 (41%), Gaps = 61/385 (15%)

Query: 56  LRLTVKDRASLEQ---FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           +++   DR  L +   FL ++C  +G  ++ A+        F Y    + SP   T++N 
Sbjct: 159 MQIRDDDRELLRKLLNFLIQKCCRNGMWNV-ALEELGRLKDFGY----KASP---TTYNA 210

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L     +    DT   + + ++++G   D  T        CK GR      +L    +  
Sbjct: 211 LIQVFLRADKLDTAFLVHREMSNSGFRMDGCTLGCFAYSLCKAGRCGDALSLLE---KEE 267

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING----------- 221
           F PD V +  ++ GLC  S   EA  +  ++++  C PNV+TY  L++G           
Sbjct: 268 FVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCK 327

Query: 222 ------------------------LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
                                    C++     A  LF++M     K G  C+P  + Y 
Sbjct: 328 RILSMMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMI----KCG--CQPGYLLYN 381

Query: 258 TIIDGLCK------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
             I  +C          ++ A++ + +M D  +  + V  ++     C A  +++A  ++
Sbjct: 382 IFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEII 441

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EMM +G  PD  T++ ++  LC   K+++A  L E M   G+ P+  T++ L+D FC  
Sbjct: 442 CEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKNGIVPSVYTYTILIDSFCKA 501

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G +  A+  F  M    C   V +Y
Sbjct: 502 GLIQQARNWFDEMLRDNCTPNVVTY 526



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 91/203 (44%), Gaps = 6/203 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +     K    +  L L++ + S G  P+  TY +LIN  C  G +     +
Sbjct: 747 PNVITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRL 806

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + ++ +     ++  +I+G   E   + +  L  +L      P    Y  LI+   +
Sbjct: 807 LDEMKQTYWPRHISSYRKIIEGFNRE--FITSIGLLDELSENESVPVESLYRILIDNFIK 864

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    ALNL EE+++       +   N   YT++I+ L     VDKA EL+  M +KN+
Sbjct: 865 AGRLEGALNLLEEISSSPS----LAVANKYLYTSLIESLSHASKVDKAFELYASMINKNV 920

Query: 285 NPDVVTYNSLIHGFCYANDWNEA 307
            P++ T+  LI G      W EA
Sbjct: 921 VPELSTFVHLIKGLTRVGKWQEA 943


>gi|255660800|gb|ACU25569.1| pentatricopeptide repeat-containing protein [Verbena rigida]
          Length = 418

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G++PD  T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G K +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 36/160 (22%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   +   GL PD +TY  LI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA------------- 196
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A             
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 197 ----------------------AALFTKLKAFGCKPNVIT 214
                                 + L  +++  G KP+V+T
Sbjct: 379 PEIGTYTMIINEFCKKGDVWXGSKLLKEMQRDGYKPSVVT 418


>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
 gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
          Length = 969

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/319 (29%), Positives = 156/319 (48%), Gaps = 11/319 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF I   M+  +   P  ++++ +   L +    +    LF+ + S G+ PD+YTY I
Sbjct: 437 DKAFQIIKLMMR-KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTI 495

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK+G +         +     +P  V +T+L+       ++ +A+ +F ++   G
Sbjct: 496 LIDSFCKVGLIEQARSWFDEMESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMVDAG 555

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV----------VCKPNTVTYT 257
           C PN ITYS L++GLC+ G +  A  ++ +M   +   G              PN VTY 
Sbjct: 556 CAPNTITYSALVDGLCKAGESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYG 615

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +IDGLCK   V  A+EL   M      P+ + Y++LI GFC     + A  +   M   
Sbjct: 616 ALIDGLCKAHKVVDAQELLDVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSKC 675

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P V T+  ++D + K+ ++D A ++L  M+     PN  T++ ++DG C  G    A
Sbjct: 676 GYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKA 735

Query: 378 KELFVSMESMGCKHTVFSY 396
            +L   ME  GC   V +Y
Sbjct: 736 LKLLSMMEKRGCNPNVVTY 754



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 141/282 (50%), Gaps = 11/282 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ L     K    D    +F R++  G  P ++TY  LI+   K  R+     VL ++L
Sbjct: 649 YDALIDGFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIKVLSQML 708

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S  TP+ V +T++I GLC      +A  L + ++  GC PNV+TY++LI+GL ++G   
Sbjct: 709 ESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVD 768

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           ++L LF +M          C PN VTY  +I+  C  G +D+A  L  +MK       V 
Sbjct: 769 MSLQLFTQMITQG------CAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQ 822

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            Y S++ GF  +  +  +  LL E+   G+      + +++D   K G++++A  L + M
Sbjct: 823 GYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEM 880

Query: 350 ILRGVNPNTS---TFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +    + N +   T+++L+   CL  ++  A EL+  +   G
Sbjct: 881 MEVSSSLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKG 922



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 129/304 (42%), Gaps = 37/304 (12%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +   +D  +S   R+      P++ TY  L+  F K  ++     ++  ++     P+
Sbjct: 284 LMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPN 343

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI------- 229
              F SL+   C       A  L  ++   GC P  + Y+  I  +C +G  +       
Sbjct: 344 PSLFNSLVHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSIC-SGEELPSPDLLA 402

Query: 230 VALNLFEEM------------AN------GNGKFGVVCK-----------PNTVTYTTII 260
           +A  ++EEM            AN      G GKF    +           P+T TY+ +I
Sbjct: 403 LAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVI 462

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
             LC+   V+KA  LF +MK   + PDV TY  LI  FC      +A     EM   G  
Sbjct: 463 TFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDEMESVGCS 522

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P VVT+  ++    K  ++ +AS +   M+  G  PNT T+S L+DG C  G    A E+
Sbjct: 523 PSVVTYTALLHAYLKTKQVPQASDIFHRMVDAGCAPNTITYSALVDGLCKAGESQKACEV 582

Query: 381 FVSM 384
           +  M
Sbjct: 583 YAKM 586



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 60/223 (26%), Positives = 103/223 (46%), Gaps = 5/223 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R   P + ++  L   L K+   D  L LF ++ + G  P+  TY +LIN  C  G
Sbjct: 741 MMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQLFTQMITQGCAPNYVTYRVLINHCCAAG 800

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     +L  + ++ +      + S+++G     + + +  L  +L++ G       Y 
Sbjct: 801 LLDEAHSLLSEMKQTYWPKYVQGYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYG 858

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G    AL L +EM   +    +  K    TYT++I  LC    ++KA EL+
Sbjct: 859 LLIDSFSKAGRLEKALELHKEMMEVSSSLNITSKD---TYTSLIQALCLASQLEKAFELY 915

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            ++  K + P++  +  LI G    N WNEA  L   M D+GV
Sbjct: 916 SEITRKGVVPELSAFICLIKGLIKVNKWNEALQLCYSMCDEGV 958



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/254 (25%), Positives = 115/254 (45%), Gaps = 11/254 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   L +       L L   +   G  P++ TY  LI+   K G+V     +
Sbjct: 714 PNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGKSGKVDMSLQL 773

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++     P+ V +  LI   CA   + EA +L +++K       V  Y +++ G  +
Sbjct: 774 FTQMITQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQGYCSVVQGFSK 833

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               I +L L EE+ + +G   +        Y  +ID   K G ++KA EL  +M + + 
Sbjct: 834 --KFIASLGLLEELES-HGMVSI-----APVYGLLIDSFSKAGRLEKALELHKEMMEVSS 885

Query: 285 NPDVV---TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + ++    TY SLI   C A+   +A  L  E+  +GV P++  F  ++  L K  K +E
Sbjct: 886 SLNITSKDTYTSLIQALCLASQLEKAFELYSEITRKGVVPELSAFICLIKGLIKVNKWNE 945

Query: 342 ASRLLELMILRGVN 355
           A +L   M   GVN
Sbjct: 946 ALQLCYSMCDEGVN 959



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 98/229 (42%), Gaps = 26/229 (11%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VLGR+L             +++  C      +A     +LK FG +P+  TY+ L+  L 
Sbjct: 170 VLGRLL-----------NVIVRKCCRHGAWAKALEELGRLKDFGYRPSGATYNALVQVLA 218

Query: 224 RTGHTIVALNLFEEMAN---GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             G   +   + +EM+       KF V C             LCKEG   +  +  + ++
Sbjct: 219 TAGQMDMGFRVQKEMSELGFCTDKFTVGC---------FAQALCKEG---RWSDALVMIE 266

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            ++   D V    +I G   A+ ++EA   L  M      P+VVT+  ++    K  ++ 
Sbjct: 267 REDFKLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLAGFLKKKQLG 326

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
              R++ +M+  G NPN S F++L+  +C      +A +L   M   GC
Sbjct: 327 WCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRMAGCGC 375



 Score = 64.7 bits (156), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 13/260 (5%)

Query: 114 FGCLAKTKHYD----TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +  LA+  H+D    T   L + +            N+++   C+ G  +     LGR+ 
Sbjct: 140 YNALAEVLHFDDRARTTERLLREIGEDDREVLGRLLNVIVRKCCRHGAWAKALEELGRLK 199

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
              + P    + +L++ L    ++     +  ++   G   +  T       LC+ G   
Sbjct: 200 DFGYRPSGATYNALVQVLATAGQMDMGFRVQKEMSELGFCTDKFTVGCFAQALCKEGRWS 259

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            AL + E             K +TV  T +I GL +    D+A     +M+  +  P+VV
Sbjct: 260 DALVMIEREDF---------KLDTVLCTQMISGLMEASLFDEAISFLHRMRCNSCIPNVV 310

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +L+ GF           ++  MM++G  P+   FN ++   C       A +LL  M
Sbjct: 311 TYRTLLAGFLKKKQLGWCKRIISMMMNEGCNPNPSLFNSLVHSYCNARDYPYAYKLLNRM 370

Query: 350 ILRGVNPNTSTFSTLMDGFC 369
              G  P    ++  +   C
Sbjct: 371 AGCGCPPGYVVYNIFIGSIC 390


>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
          Length = 1078

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 148/270 (54%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           LSL + +   G  P + TYN  I   CK+GR+S     L  +L +   PD V++ +LI G
Sbjct: 324 LSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    +M+A  LF +L++    P ++TY+TL++GLCR G   VA  L  EM N      
Sbjct: 384 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG---- 439

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+ VTYT +++G CK G +  A+E F +M  + +  D   Y + I G     D + 
Sbjct: 440 --IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSR 497

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM+ +G  PD++ +NV++D LCK G ++EAS LL+ M+  GV P+  T+++++ 
Sbjct: 498 AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH 557

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                GR+   +E+F  M S G   +V +Y
Sbjct: 558 AHLENGRLRKGREIFYEMLSKGLTPSVVTY 587



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +   +FD M+  R SP  + + N +   L         + +++ +   G+ P + TYN L
Sbjct: 182 QCLSVFDKMIKSRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +CK G+V  G  +L  + R    P+ V +  LI GL  +    +A  L  ++   G 
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K +  TY+ LI G    G    AL+L EEM            P   TY + I GLCK G 
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKG------ASPTVATYNSFIYGLCKLGR 354

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +    M   N+ PDVV+YN+LI+G+C   +  +A  L  E+    + P +VT+N 
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNT 414

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC+ G+++ A +L   MI  G+ P+  T++ L++G C  G ++ A+E F  M   G
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEG 474

Query: 389 CKHTVFSY 396
            +   ++Y
Sbjct: 475 LELDSYAY 482



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 154/302 (50%), Gaps = 7/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD + ++   P  +T +N L   L +    +    L   + + G+ PD+ TY IL
Sbjct: 392 KAFLLFDELRSIYLFPTIVT-YNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  CKMG +S        +L      D+ A+ + I G         A +L  ++ A G 
Sbjct: 451 VNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF 510

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++I Y+ +++GLC+ G+   A  L ++M +     GV+  P+ VTYT+II    + G 
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSD----GVI--PDYVTYTSIIHAHLENGR 564

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + K +E+F +M  K + P VVTY  LIHG         A     EM ++G+ P+V+T+N 
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK  +MD+A      M+ +G+ PN  +++ L++  C  G    A  L+  M   G
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG 684

Query: 389 CK 390
            +
Sbjct: 685 VQ 686



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+ ++ + P + ++N     L K       +     + +  L PD+ +YN L
Sbjct: 322 EALSLQEEMV-LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +C++G +   F++   +      P  V + +L+ GLC +  +  A  L  ++   G 
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            P+++TY+ L+NG C+ G   +A   F+EM +               G  K G   +   
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ + Y  ++DGLCK G +++A EL  +M    + PD VTY S+IH   
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 +   +  EM+ +G+ P VVT+ V++      G+++ A      M  +G+ PN  
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVI 620

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+++L++G C   R++ A   F  M   G     +SY
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSY 657



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 130/249 (52%), Gaps = 11/249 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT--VLSLFKRLNSTGLFPDLYTYNILINC 151
           FD ML+       L S+      + + K  DT    SL + + + G  PDL  YN++++ 
Sbjct: 467 FDEMLH---EGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGFPPDLIIYNVVVDG 523

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK+G +     +L +++     PD V +TS+I       R+ +   +F ++ + G  P+
Sbjct: 524 LCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENGRLRKGREIFYEMLSKGLTPS 583

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+TY+ LI+G    G    A   F EM       G++  PN +TY ++I+GLCK   +D+
Sbjct: 584 VVTYTVLIHGHAGKGRLERAFIYFSEMQEK----GIL--PNVITYNSLINGLCKVRRMDQ 637

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A   F +M +K I P+  +Y  LI+  C   +W EA  L  +M+D+GVQPD  T + ++ 
Sbjct: 638 AYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDSCTHSALLK 697

Query: 332 ELCKNGKMD 340
           +L K+ K+ 
Sbjct: 698 QLGKDCKLQ 706



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           ++LI  + K   V     V  ++++S  +PD      +++ L  +  + +A  ++  +  
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           FG KP ++TY+TL++  C+ G     L+L  EM          C PN VTY  +I+GL K
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRG------CAPNDVTYNVLINGLSK 281

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G  ++AK L  +M    +     TYN LI+G+       EA  L  EM+ +G  P V T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N  +  LCK G+M +A + L  M+   + P+  +++TL+ G+C  G +  A  LF  + 
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 386 SMGCKHTVFSY 396
           S+    T+ +Y
Sbjct: 402 SIYLFPTIVTY 412



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            +LL    +K    +  LS+F ++  + L PD+   N ++        +S    V   + 
Sbjct: 167 LDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMG 226

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P  V + +L+   C   ++ +   L ++++  GC PN +TY+ LINGL + G   
Sbjct: 227 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFE 286

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L  EM     K G+  K +  TY  +I G   +G + +A  L  +M  K  +P V 
Sbjct: 287 QAKGLIGEML----KTGL--KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVA 340

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNS I+G C     ++A   L +M+   + PDVV++N ++   C+ G + +A  L + +
Sbjct: 341 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 400

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P   T++TL+DG C  G +  A++L V M + G    + +Y
Sbjct: 401 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF  ML+   +P  +T   L+ G   K +  +     F  +   G+ P++ TYN LIN  
Sbjct: 571 IFYEMLSKGLTPSVVTYTVLIHGHAGKGR-LERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+ R+   +     ++     P+  ++T LI   C      EA +L+ ++   G +P+ 
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 213 ITYSTLINGLCR 224
            T+S L+  L +
Sbjct: 690 CTHSALLKQLGK 701



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 54/127 (42%), Gaps = 4/127 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K +  D   + F  +   G+FP+ Y+Y ILIN  C MG       +
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSL 676

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT----KLKAFGCKPNVITYSTLIN 220
             ++L     PD+   ++L+K L  + ++       T    K+          T  T ++
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVHGTSTMPTAKVDLLSQTVGAATALTSVS 736

Query: 221 GLCRTGH 227
            +   GH
Sbjct: 737 SIAENGH 743


>gi|449463386|ref|XP_004149415.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L     ++T  ++FK + S G  P   TYN +I CFC MG +    V+
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L++  +P+ + + +LI G C +  +  A  L   +K  G KP+  TY+ LI+G  R
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +LF  M     + G+   PN VTYT IIDG      VD A  LF +M +   
Sbjct: 495 GGKLEHATSLFYGMM----EHGI--SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGN 548

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P   TYN +I GF   N  +EA     +M+ QG+ P+V+T+   +D LC+NG+   A +
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK--ELFVSMESMGCKHTVFSY 396
           +   M  R   PN  T+S+L+ G C  GR   A+   L   +   GC+  V +Y
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTY 662



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L SF  L   L K    D    ++ ++ ++G+ P L T+N +IN  CK GRV    +++ 
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            I R    P+A  +TSLI G C    +  A A+F ++   GC PN +TYSTLINGLC  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+++ EEM           +P   TYT  +  LC  G   +A EL  +MK +   P
Sbjct: 287 RLEEAMDMLEEMVQKG------IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVP 340

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           ++ T+ +LI G      +  A  L  +M+  G+ P  VT+N ++++LC  G+ + A  + 
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M+  G  P+T T++ ++  FCL G +  A  +F  M   G    V +Y
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY 450



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 148/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I  ++      P   T  +L+ G   +  + D   ++F R+   G  P+  TY+ 
Sbjct: 219 QEAKLIMSHIFRYDAYPNAFTYTSLILGH-CRNHNLDLAFAMFDRMVKDGCDPNSVTYST 277

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  GR+     +L  +++    P    +T  +  LC      EA  L  K+K  G
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ LI+GL R G   +A+ L+ +M       G+V  P TVTY  +I+ LC EG
Sbjct: 338 CVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD----GLV--PTTVTYNALINQLCVEG 391

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             + A  +F  M      P   TYN +I  FC   D  +A  +  +M+  G  P+V+T+N
Sbjct: 392 RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   CK G ++ A RLLE+M   G+ P+  T++ L+ GF   G++ HA  LF  M   
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511

Query: 388 G 388
           G
Sbjct: 512 G 512



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 160/332 (48%), Gaps = 36/332 (10%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF IF +ML+   S P   ++N +  C          + +F ++   G  P++ TYN LI
Sbjct: 396 AFTIFKWMLS-HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             +CK G +++   +L  +  +   PDA  +T LI G     ++  A +LF  +   G  
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS 514

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMA-NGN-------------------------- 242
           PN +TY+ +I+G         AL LF +M  +GN                          
Sbjct: 515 PNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENF 574

Query: 243 -GKF---GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            GK    G++  PN +TYT+ IDGLC+ G    A ++F +M+ +N  P++ TY+SLI+G 
Sbjct: 575 CGKMVKQGLL--PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632

Query: 299 CYANDWNEANC--LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           C      +A    LL  +   G +P+V T+  ++  LC  G+  EA +L+  M  +G+ P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   +  L+ G C   +V  A  +F SM+++G
Sbjct: 693 SEEIYRALLIGECKNLKVESALNIFYSMDTLG 724



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 149/336 (44%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +FD M+     P  +T   L+ G L      +  + + + +   G+ P +YTY I +
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLING-LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPL 314

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              C  G  S    +LG++ +    P+   FT+LI GL  + +   A  L+ K+ A G  
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMAN--------------------GNGKFGVVC 249
           P  +TY+ LIN LC  G    A  +F+ M +                    G+ +  +V 
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 250 ---------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     PN +TY T+I G CK+G ++ A  L   MK   + PD  TY  LI GF  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                 A  L   MM+ G+ P+ VT+  I+D      K+D+A  L   M+  G  P++ T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ ++ GF  T  ++ A+     M   G    V +Y
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 9/303 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            A  +F  M+    SP  +T   ++ G     K  D  L+LF ++  +G  P   TYN++
Sbjct: 500 HATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK-VDDALALFWKMVESGNLPSSQTYNVM 558

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ F K   +S      G++++    P+ + +TS I GLC   R   A  +F +++    
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY 618

Query: 209 KPNVITYSTLINGLCRTGHTIVA--LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            PN+ TYS+LI GLC+ G    A   NL   + +    +G  C+PN  TYTT++ GLC E
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH----YG--CEPNVDTYTTLVKGLCGE 672

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A +L + M+ K + P    Y +L+ G C       A  +   M   G Q  +  +
Sbjct: 673 GRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDY 732

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  LCK   ++EA  + + M+ +  N +   ++ L+DG    G  +   +L   MES
Sbjct: 733 KALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLCLKLLHVMES 792

Query: 387 MGC 389
             C
Sbjct: 793 RNC 795



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 8/262 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N++    +KT       +   ++   GL P++ TY   I+  C+ GR    F +
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA--LFTKLKAFGCKPNVITYSTLINGL 222
              + +  + P+   ++SLI GLC E R  +A    L  +L  +GC+PNV TY+TL+ GL
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C  G    A  L   M     K G+  +P+   Y  ++ G CK   V+ A  +F  M   
Sbjct: 670 CGEGRCYEADQLVVSMQ----KKGL--QPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
                +  Y +LI   C  N   EA C+   M+++    D V + V++D L K G+ D  
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGLLKEGETDLC 783

Query: 343 SRLLELMILRGVNPNTSTFSTL 364
            +LL +M  R    N  T+  L
Sbjct: 784 LKLLHVMESRNCTLNFQTYVML 805



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           SG     +I+  E FC       + P+    TSF      L +         +F  +   
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQGLLPNVITYTSF---IDGLCRNGRTGLAFKIFHEMEKR 616

Query: 137 GLFPDLYTYNILINCFCKMGRVSHG--FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
             FP+LYTY+ LI   C+ GR      + +L R+      P+   +T+L+KGLC E R  
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCY 676

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  L   ++  G +P+   Y  L+ G C+      ALN+F  M     +       +  
Sbjct: 677 EADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQL------HLS 730

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            Y  +I  LCKE F+++A+ +F  M +K+ N D V +  L+ G 
Sbjct: 731 DYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVVWTVLLDGL 774


>gi|242075962|ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
 gi|241939100|gb|EES12245.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 163/305 (53%), Gaps = 8/305 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+  +      P   SFN++   + +  ++   L L +R+   G  PD  T+NI
Sbjct: 199 QDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFGCSPDTITHNI 258

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  C+  +V+ G  +L R+ R     P+ V +TS+I G C   R+ +A +++  +   
Sbjct: 259 LVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLES 318

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PN +TY+ LING  +      A+ ++ ++          C P+ VT++++IDG C+ 
Sbjct: 319 GTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRR------CPPDVVTFSSLIDGYCRC 372

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A  ++ +M   +I P+V T++ +IH  C  N   EA   L E+ M   + P    
Sbjct: 373 GQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQTFI 432

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++D LCK G+++EA+ ++  M  +G +P+  T++ L+ G C+ GR+  A  LF  M 
Sbjct: 433 YNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMV 492

Query: 386 SMGCK 390
             GC+
Sbjct: 493 ETGCR 497



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 154/294 (52%), Gaps = 10/294 (3%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVV 164
           P    NLL   +A+ +  D V +LF+     GL+ PD +++N++I   C++G       +
Sbjct: 182 PYAYNNLLNLLIARGRAQDAV-ALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALEL 240

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLC 223
           + R+     +PD +    L+ GLC   ++     L  +L+  G C PNV+TY+++I+G C
Sbjct: 241 VERMTEFGCSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYC 300

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    AL+++ +M           +PNTVTY  +I+G  K   ++ A  ++ Q+  + 
Sbjct: 301 KAGRMEDALSVYNDMLESG------TRPNTVTYNVLINGYGKALDMESAVRMYRQLILRR 354

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVT++SLI G+C     ++A  +  EM    +QP+V TF++I+  LCK  +  EA 
Sbjct: 355 CPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEAL 414

Query: 344 RLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L  + +R  + P T  ++ ++D  C  G+V  A  +   ME  GC    ++Y
Sbjct: 415 GFLRELNMRADIAPQTFIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTY 468



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 140/290 (48%), Gaps = 6/290 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M +     P    F+ + G        D  ++L  + +  G   + Y YN L
Sbjct: 129 DALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAVTLLTKASQFGRRIEPYAYNNL 188

Query: 149 INCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +N     GR      +    I    ++PD  +F  +IKG+C      +A  L  ++  FG
Sbjct: 189 LNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKGVCRVGNFQKALELVERMTEFG 248

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+ IT++ L++GLCR        +L   +         VC PN VTYT++I G CK G
Sbjct: 249 CSPDTITHNILVDGLCRAKQVNRGHDLLRRLQRDG-----VCMPNVVTYTSVISGYCKAG 303

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  ++  M +    P+ VTYN LI+G+  A D   A  +  +++ +   PDVVTF+
Sbjct: 304 RMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFS 363

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++D  C+ G++D+A R+ + M    + PN  TFS ++   C   R   A
Sbjct: 364 SLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEA 413



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 155/296 (52%), Gaps = 9/296 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S++ +   L ++  +   L LF ++ + +G  PD   ++ +       G +    
Sbjct: 108 PPSEQSYSHVITLLCRSGRHRDALKLFDQMTDQSGYLPDAVFFSFVAGSCTNAGLLDAAV 167

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLING 221
            +L +  +     +  A+ +L+  L A  R  +A ALF      G   P+  +++ +I G
Sbjct: 168 TLLTKASQFGRRIEPYAYNNLLNLLIARGRAQDAVALFESWIQDGLYSPDGWSFNVVIKG 227

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           +CR G+   AL L E M     +FG  C P+T+T+  ++DGLC+   V++  +L  +++ 
Sbjct: 228 VCRVGNFQKALELVERMT----EFG--CSPDTITHNILVDGLCRAKQVNRGHDLLRRLQR 281

Query: 282 KNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +  P+VVTY S+I G+C A    +A  +  +M++ G +P+ VT+NV+++   K   M+
Sbjct: 282 DGVCMPNVVTYTSVISGYCKAGRMEDALSVYNDMLESGTRPNTVTYNVLINGYGKALDME 341

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A R+   +ILR   P+  TFS+L+DG+C  G+++ A  ++  M     +  V+++
Sbjct: 342 SAVRMYRQLILRRCPPDVVTFSSLIDGYCRCGQLDDAMRIWKEMGQHHIQPNVYTF 397



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 126/273 (46%), Gaps = 31/273 (11%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFV 163
           P   + N+L   L + K  +    L +RL   G+  P++ TY  +I+ +CK GR+     
Sbjct: 251 PDTITHNILVDGLCRAKQVNRGHDLLRRLQRDGVCMPNVVTYTSVISGYCKAGRMEDALS 310

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V   +L S   P+ V +  LI G      +  A  ++ +L    C P+V+T+S+LI+G C
Sbjct: 311 VYNDMLESGTRPNTVTYNVLINGYGKALDMESAVRMYRQLILRRCPPDVVTFSSLIDGYC 370

Query: 224 RTGHTIVALNLFEEMANGNGKFGV---------VCK---------------------PNT 253
           R G    A+ +++EM   + +  V         +CK                     P T
Sbjct: 371 RCGQLDDAMRIWKEMGQHHIQPNVYTFSIIIHSLCKQNRSAEALGFLRELNMRADIAPQT 430

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
             Y  +ID LCK G V++A  +   M++K  +PD  TY  LI G C      EA  L  +
Sbjct: 431 FIYNPVIDILCKGGQVEEANLIVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHK 490

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           M++ G +PD +T N  +  + K G  +E  +++
Sbjct: 491 MVETGCRPDKITVNSFISCVLKAGMPNEVDQIM 523


>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
           mitochondrial-like [Brachypodium distachyon]
          Length = 966

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 156/319 (48%), Gaps = 11/319 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF I   M+  +   P  +++  +   L + K  +    LF+ +   G+ PD+YTY I
Sbjct: 434 EKAFQILKEMMR-KGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTI 492

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK G +         +     +P+ V +T+L+       ++++A  +F ++    
Sbjct: 493 LIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAA 552

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM--ANGN--------GKFGVVCKPNTVTYT 257
           C PN +TYS LI+GLC+ G    A  ++E++   +GN        G       PN VTY 
Sbjct: 553 CYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYG 612

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +IDGLCK   V  A EL   M      P+ + Y++LI GFC     + A  + + M   
Sbjct: 613 ALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKC 672

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P V T+  ++D + K+G++D A ++L  M+    NPN  T++ ++DG    G +  A
Sbjct: 673 GYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKA 732

Query: 378 KELFVSMESMGCKHTVFSY 396
             L   ME  GC   V +Y
Sbjct: 733 LNLLSLMEEKGCSPNVVTY 751



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 157/321 (48%), Gaps = 28/321 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A   FD M ++  SP  +T   LL   L K+K       +F R+     +P+  TY+ 
Sbjct: 504 EQARSWFDEMRSVGCSPNVVTYTALLHAYL-KSKQLIQAHDIFHRMVDAACYPNAVTYSA 562

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC----------------FTPDAVAFTSLIKGLCAES 191
           LI+  CK G +     V  +++ +                   P+ V + +LI GLC   
Sbjct: 563 LIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQ 622

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           ++ +A  L   + A GC+PN I Y  LI+G C+ G    A  +F  M     K G +  P
Sbjct: 623 KVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT----KCGYL--P 676

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  TYT++ID + K+G +D A ++  +M + + NP+VVTY ++I G     +  +A  LL
Sbjct: 677 SVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLL 736

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             M ++G  P+VVT+  ++D L K GK D + +L + M  +G  PN  T+  L++  C  
Sbjct: 737 SLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAA 796

Query: 372 GRVNHAKELFVSMESMGCKHT 392
           G ++ A  L   M     KHT
Sbjct: 797 GLLDEAHLLLDEM-----KHT 812



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 108/402 (26%), Positives = 162/402 (40%), Gaps = 72/402 (17%)

Query: 44  SDPTTTAK--LKESLRLTVKDRASLEQFLK---ERCKSSGQGDITAITPNEAFCIFDYML 98
            DP  TA+  L+E   +   DR  L + L     RC   G  D  A+        F Y  
Sbjct: 147 EDPARTAERLLRE---IGEDDREVLRRLLNVLVRRCCRHGLWD-EALEELGRLKDFGY-- 200

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             RPS     ++N L   LA     +    + K ++++G   D  T        CK+GR 
Sbjct: 201 --RPSA---VTYNALVQVLASAGQVEMGFRVQKEMSASGFCMDRSTIGYFAQALCKVGRW 255

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           +     L  + +  F  D V  T +I GL   S   EA +   +++   C PNV+TY TL
Sbjct: 256 ADA---LNMLEKEDFNLDTVLCTQMISGLMEASLFNEAMSFLHRMRCNSCIPNVVTYRTL 312

Query: 219 INGLCRT---GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           ++G  +    G     +N+   M  G       C PN   + +++ G C  G    A +L
Sbjct: 313 LSGFLKKKQFGWCKRIINMM--MTEG-------CNPNPSLFNSLVHGYCNAGDYAYAYKL 363

Query: 276 FLQMKDKNINPDVVTYN--------------------------SLIHGFCYANDWNEAN- 308
           F +M      P  V YN                           ++   C  N  N AN 
Sbjct: 364 FNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVYEEMLAASCVLNKVNTANF 423

Query: 309 --CL------------LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
             CL            L EMM +G  PD  T+  ++  LC+  K++++  L + M   GV
Sbjct: 424 SRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMKRAGV 483

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           NP+  T++ L+D FC  G +  A+  F  M S+GC   V +Y
Sbjct: 484 NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTY 525



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 141/331 (42%), Gaps = 47/331 (14%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D ML     P  +  ++ L     K    D    +F R+   G  P ++TY  
Sbjct: 625 SDAHELLDAMLAAGCEPNQIV-YDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTS 683

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K GR+     VL  +L     P+ V +T++I GL     I +A  L + ++  G
Sbjct: 684 LIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKG 743

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV+TY+ LI+GL +TG    +L LF++M N  G     C PN VTY  +I+  C  G
Sbjct: 744 CSPNVVTYTALIDGLGKTGKADASLKLFKQM-NSKG-----CAPNYVTYRVLINHCCAAG 797

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L  +MK  +    +  Y+  + GF  +  +  +  LL EM      P    + 
Sbjct: 798 LLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEEMESHETVPIAPVYG 855

Query: 328 VIMDELCKNG--------------------------------------KMDEASRLLELM 349
           +++D   K G                                      +++EA  L   M
Sbjct: 856 MLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAFTLYTEM 915

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             +G+ P+   F +L+ G     + + A +L
Sbjct: 916 TRKGIVPDLIVFVSLVKGLIEVNKWDEALQL 946



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/337 (23%), Positives = 138/337 (40%), Gaps = 16/337 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           DR+++  F +  CK     D   +   E F + D +L  +           +   L +  
Sbjct: 238 DRSTIGYFAQALCKVGRWADALNMLEKEDFNL-DTVLCTQ-----------MISGLMEAS 285

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
            ++  +S   R+      P++ TY  L++ F K  +      ++  ++     P+   F 
Sbjct: 286 LFNEAMSFLHRMRCNSCIPNVVTYRTLLSGFLKKKQFGWCKRIINMMMTEGCNPNPSLFN 345

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA--LNLFEEMA 239
           SL+ G C       A  LF ++   G  P  + Y+  I  +C       A  L+L E++ 
Sbjct: 346 SLVHGYCNAGDYAYAYKLFNRMTTCGSPPGYVAYNIFIGSICGQEELPNAELLDLVEKVY 405

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C  N V        LC  G  +KA ++  +M  K   PD  TY  +I   C
Sbjct: 406 EE--MLAASCVLNKVNTANFSRCLCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLC 463

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A    ++  L  EM   GV PDV T+ +++D  CK G +++A    + M   G +PN  
Sbjct: 464 QAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVV 523

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ L+  +  + ++  A ++F  M    C     +Y
Sbjct: 524 TYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTY 560



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/287 (25%), Positives = 120/287 (41%), Gaps = 42/287 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K    D  + +   + +    P++ TY  +I+   K+G +     +
Sbjct: 676 PSVHTYTSLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNL 735

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     +P+ V +T+LI GL    +   +  LF ++ + GC PN +TY  LIN  C 
Sbjct: 736 LSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCA 795

Query: 225 TG-------------HT--------------------IVALNLFEEMANGNGKFGVVCKP 251
            G             HT                    I +L L EEM +          P
Sbjct: 796 AGLLDEAHLLLDEMKHTHWPKHLQGYHCAVQGFSKKFIASLGLLEEMESHE------TVP 849

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT---YNSLIHGFCYANDWNEAN 308
               Y  +ID   K G ++ A EL  ++ + + + ++ +   Y SLI   C A+   EA 
Sbjct: 850 IAPVYGMLIDSFSKAGRLETALELHKELVEVSSSLNMTSTGMYASLIQALCLASQVEEAF 909

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            L  EM  +G+ PD++ F  ++  L +  K DEA +L       GVN
Sbjct: 910 TLYTEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGVN 956



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 5/223 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  +   P + ++  L   L KT   D  L LFK++NS G  P+  TY +LIN  C  G
Sbjct: 738 LMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHCCAAG 797

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +    ++L  +  + +      +   ++G     + + +  L  ++++    P    Y 
Sbjct: 798 LLDEAHLLLDEMKHTHWPKHLQGYHCAVQGF--SKKFIASLGLLEEMESHETVPIAPVYG 855

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G    AL L +E+   +    +    +T  Y ++I  LC    V++A  L+
Sbjct: 856 MLIDSFSKAGRLETALELHKELVEVSSSLNMT---STGMYASLIQALCLASQVEEAFTLY 912

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            +M  K I PD++ + SL+ G    N W+EA  L      +GV
Sbjct: 913 TEMTRKGIVPDLIVFVSLVKGLIEVNKWDEALQLCYGRCHEGV 955


>gi|255660792|gb|ACU25565.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
          Length = 418

 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEENLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLNEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G++PD  T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G ++ GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLNEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKFTYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G K +V +
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418



 Score = 55.5 bits (132), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 65/160 (40%), Gaps = 36/160 (22%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   +   GL PD +TY  LI
Sbjct: 260 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAQDLIDEMIMKGLKPDKFTYTTLI 318

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA------------- 196
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A             
Sbjct: 319 DGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 378

Query: 197 ----------------------AALFTKLKAFGCKPNVIT 214
                                 + L  +++  G KP+V+T
Sbjct: 379 PEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYKPSVVT 418


>gi|449453087|ref|XP_004144290.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449522905|ref|XP_004168466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 915

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 94/286 (32%), Positives = 148/286 (51%), Gaps = 7/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           NL+ G   + +  D  L LF +++    +P + TY ++I   C++GR +    +   +  
Sbjct: 279 NLIHG-FCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTE 337

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+   +T LI  LC +S   +A  +   +   G  P+V+TY+ LI+G C+ G +  
Sbjct: 338 KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDGYCKKGLSAS 397

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL +   M + N      C PN  TY  +I G C+   + KA  L  +M ++ + P+VVT
Sbjct: 398 ALEILSLMESNN------CSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVT 451

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN LIHG C   D   A  LL  M + G+ PD  T++V +D LCK G ++EA  L E + 
Sbjct: 452 YNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLK 511

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +G+  N   +STL+DG+C  G+V+  + L   M S GC     +Y
Sbjct: 512 EKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITY 557



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/308 (30%), Positives = 155/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   +   P + ++ +L   L +  ++D    +   +   GL P + TYN L
Sbjct: 327 EALNMFKEMTE-KHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNAL 385

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK G  +    +L  +  +  +P+A  +  LI G C    I +A +L  K+     
Sbjct: 386 IDGYCKKGLSASALEILSLMESNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKL 445

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PNV+TY+ LI+G C+ G    A  L   M       G+V  P+  TY+  ID LCK G 
Sbjct: 446 QPNVVTYNILIHGQCKEGDLGSAYKLLSLMNES----GLV--PDEWTYSVFIDTLCKRGL 499

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A+ LF  +K+K I  + V Y++LI G+C     ++   LL +M+  G  P+ +T+N 
Sbjct: 500 VEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAGCVPNSITYNS 559

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK     EA  L+++MI R + P   T++ L+D        + A ++F  M S G
Sbjct: 560 LIDGYCKEKNFKEARLLVDIMIKRDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTG 619

Query: 389 CKHTVFSY 396
               VF Y
Sbjct: 620 SHPDVFIY 627



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 100/350 (28%), Positives = 167/350 (47%), Gaps = 68/350 (19%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  +N+L   L++    D + S++  +    + P+++T N ++N +CK+G V    + + 
Sbjct: 169 LRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGYCKLGNVVEAELYVS 228

Query: 167 RILRSCFTPDA-----------------------------------VAFTSLIKGLCAES 191
           +I+++  + D                                    V++T+LI G C   
Sbjct: 229 KIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKGCLRNEVSYTNLIHGFCEAR 288

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA------------ 239
           R+ EA  LF+++    C P V TY+ +I  LC+ G    ALN+F+EM             
Sbjct: 289 RVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEALNMFKEMTEKHCQPNVHTYT 348

Query: 240 -------------------NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                              NG  + G++  P+ VTY  +IDG CK+G    A E+   M+
Sbjct: 349 VLICSLCEDSNFDDAKKILNGMLEKGLI--PSVVTYNALIDGYCKKGLSASALEILSLME 406

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             N +P+  TYN LI GFC   + ++A  LL +M+++ +QP+VVT+N+++   CK G + 
Sbjct: 407 SNNCSPNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLG 466

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            A +LL LM   G+ P+  T+S  +D  C  G V  A+ LF S++  G K
Sbjct: 467 SAYKLLSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIK 516



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     + K+    +SL  ++    L P++ TYNILI+  CK G +   + +
Sbjct: 412 PNARTYNELILGFCRGKNIHKAMSLLHKMLERKLQPNVVTYNILIHGQCKEGDLGSAYKL 471

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S   PD   ++  I  LC    + EA +LF  LK  G K N + YSTLI+G C+
Sbjct: 472 LSLMNESGLVPDEWTYSVFIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCK 531

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G       L ++M +        C PN++TY ++IDG CKE    +A+ L   M  ++I
Sbjct: 532 VGKVSDGRFLLDKMLSAG------CVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRDI 585

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P   TY  LI      +++++A+ +  +M+  G  PDV  +   +   C +G++ +A  
Sbjct: 586 EPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEV 645

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  M  +G+ P+T  ++  +D +   G ++ A  +   M  +GC+ + ++Y
Sbjct: 646 LICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTY 697



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 13/291 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +   ML  R   P + ++N+L     K     +   L   +N +GL PD +TY++
Sbjct: 431 HKAMSLLHKMLE-RKLQPNVVTYNILIHGQCKEGDLGSAYKLLSLMNESGLVPDEWTYSV 489

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+  CK G V     +   +       + V +++LI G C   ++ +   L  K+ + G
Sbjct: 490 FIDTLCKRGLVEEARSLFESLKEKGIKANEVIYSTLIDGYCKVGKVSDGRFLLDKMLSAG 549

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN ITY++LI+G C+  +   A  L + M   +       +P   TYT +ID L K+ 
Sbjct: 550 CVPNSITYNSLIDGYCKEKNFKEARLLVDIMIKRD------IEPAADTYTILIDNLLKDD 603

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A ++F QM     +PDV  Y + IH +C      +A  L+ +M  +G+ PD + + 
Sbjct: 604 EFDQAHDMFDQMLSTGSHPDVFIYTAFIHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYT 663

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + +D   + G +D A  +L+ M   G  P+  T+S      CL   +++AK
Sbjct: 664 LFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYS------CLIKHLSNAK 708



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 131/269 (48%), Gaps = 6/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           S+ +R+++      L  YN+L+    +   +     V   +L    TP+     +++ G 
Sbjct: 155 SMNRRVDAFKFKLTLRCYNMLLMLLSRFLMIDEMKSVYLEMLDDMVTPNIFTLNTMVNGY 214

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    ++EA    +K+   G   +  TY++LI G CR  +   A  +F  M N       
Sbjct: 215 CKLGNVVEAELYVSKIVQAGLSLDTFTYTSLILGYCRNKNVDAANAIFLSMPNKG----- 269

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C  N V+YT +I G C+   VD+A +LF QM + N  P V TY  +I   C      EA
Sbjct: 270 -CLRNEVSYTNLIHGFCEARRVDEALKLFSQMHEDNCWPTVRTYTVIIFALCQLGRKTEA 328

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +  EM ++  QP+V T+ V++  LC++   D+A ++L  M+ +G+ P+  T++ L+DG
Sbjct: 329 LNMFKEMTEKHCQPNVHTYTVLICSLCEDSNFDDAKKILNGMLEKGLIPSVVTYNALIDG 388

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +C  G    A E+   MES  C     +Y
Sbjct: 389 YCKKGLSASALEILSLMESNNCSPNARTY 417



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 86/331 (25%), Positives = 138/331 (41%), Gaps = 36/331 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+  R   P   ++ +L   L K   +D    +F ++ STG  PD++ Y   
Sbjct: 572 EARLLVDIMIK-RDIEPAADTYTILIDNLLKDDEFDQAHDMFDQMLSTGSHPDVFIYTAF 630

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C  GR+    V++ ++      PD + +T  I        I  A  +  ++   GC
Sbjct: 631 IHAYCSHGRLKDAEVLICKMNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGC 690

Query: 209 KPNVITYSTLINGL-----------------------------CRTGHTIVALNLFEEMA 239
           +P+  TYS LI  L                              R       L+LF +MA
Sbjct: 691 EPSYYTYSCLIKHLSNAKPKEVSSSSELSDLSSGVASNDFSNCWRRVDYEFTLDLFGKMA 750

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C PN  TY   I GLCK G ++ A  LF  MK+K  +P+   YNSL+   C
Sbjct: 751 EHG------CAPNANTYGKFITGLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSC 804

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
               + EA   L  M++    P + +  +++  L   G  ++A R+    +    N +  
Sbjct: 805 QLGLYGEAIRWLDIMIENRHLPHLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEM 864

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +  L+DG    G  +   +LF  ME+ GC+
Sbjct: 865 VWKVLIDGLLKKGLSDKCSDLFGIMETQGCQ 895



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 59/262 (22%), Positives = 93/262 (35%), Gaps = 64/262 (24%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI-------- 149
           +N +   P    + L      +    D    + KR++  G  P  YTY+ LI        
Sbjct: 650 MNAKGIMPDTMLYTLFIDAYGRFGSIDGAFGILKRMHEVGCEPSYYTYSCLIKHLSNAKP 709

Query: 150 ----------------------NCFCKMGRVSHGFVV--LGRILRSCFTPDAVAFTSLIK 185
                                 NC+    RV + F +   G++      P+A  +   I 
Sbjct: 710 KEVSSSSELSDLSSGVASNDFSNCW---RRVDYEFTLDLFGKMAEHGCAPNANTYGKFIT 766

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN----- 240
           GLC    +  A  LF  +K  G  PN   Y++L+   C+ G    A+   + M       
Sbjct: 767 GLCKVGCLEVAHRLFDHMKEKGQSPNEDIYNSLLGCSCQLGLYGEAIRWLDIMIENRHLP 826

Query: 241 ---------------GNGKFG-------VVCKPN--TVTYTTIIDGLCKEGFVDKAKELF 276
                          GN +         + C+ N   + +  +IDGL K+G  DK  +LF
Sbjct: 827 HLDSCKLLLCGLYDEGNDEKAKRVFCSFLQCEYNYDEMVWKVLIDGLLKKGLSDKCSDLF 886

Query: 277 LQMKDKNINPDVVTYNSLIHGF 298
             M+ +       TY+ LI GF
Sbjct: 887 GIMETQGCQIHPKTYSMLIEGF 908


>gi|356554658|ref|XP_003545661.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 675

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 148/273 (54%), Gaps = 6/273 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    ++  +   G+ P + TYN +++ FCK G+V     +L ++ +    P+ V +  L
Sbjct: 172 DVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVL 231

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           + GL     + +A  L  ++   G + +  TY  LI G C  G    A  L EEM +   
Sbjct: 232 VNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSR-- 289

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
             G V  P  VTY TI+ GLCK G V  A++L   M +KN+ PD+V+YN+LI+G+    +
Sbjct: 290 --GAV--PTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN 345

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  L  E+  +G+ P VVT+N ++D LC+ G +D A RL + MI  G +P+  TF+ 
Sbjct: 346 IGEAFLLFAELRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTI 405

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ GFC  G +  AKELF  M + G +   F+Y
Sbjct: 406 LVRGFCKLGNLPMAKELFDEMLNRGLQPDRFAY 438



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 175/375 (46%), Gaps = 39/375 (10%)

Query: 52  LKESLRLTVKDRA-SLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSF 110
           ++E LRL ++  A + +  ++  C+  GQ D       EA  + + ML+ R + P L ++
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEK-GQLD-------EASRLGEEMLS-RGAVPTLVTY 298

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N +   L K         L   + +  L PDL +YN LI  + ++G +   F++   +  
Sbjct: 299 NTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRF 358

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P  V + +LI GLC    +  A  L  ++   G  P+V T++ L+ G C+ G+  +
Sbjct: 359 RGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPM 418

Query: 231 ALNLFEEMAN---------------GNGKFGVVCK--------------PNTVTYTTIID 261
           A  LF+EM N               G  K G   K              P+ +TY   ID
Sbjct: 419 AKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFID 478

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GL K G + +A EL  +M    + PD VTY S+IH    A    +A  + +EM+ +G+ P
Sbjct: 479 GLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFP 538

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            VVT+ V++      G++  A      M  +GV+PN  T++ L++G C   +++ A + F
Sbjct: 539 SVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNALINGLCKVRKMDQAYKFF 598

Query: 382 VSMESMGCKHTVFSY 396
             M++ G     ++Y
Sbjct: 599 TEMQAKGISPNKYTY 613



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 149/296 (50%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F   L  R   P + ++N L   L +    D  + L   +   G  PD++T+ IL
Sbjct: 348 EAFLLFAE-LRFRGLVPSVVTYNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTIL 406

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  FCK+G +     +   +L     PD  A+ + I G        +A  +  ++ A G 
Sbjct: 407 VRGFCKLGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 466

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITY+  I+GL + G+   A  L ++M       G+V  P+ VTYT+II      G 
Sbjct: 467 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYN----GLV--PDHVTYTSIIHAHLMAGH 520

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + KA+ +FL+M  K I P VVTY  LIH +        A     EM ++GV P+V+T+N 
Sbjct: 521 LRKARAVFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 580

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +++ LCK  KMD+A +    M  +G++PN  T++ L++  C  G    A  L+  M
Sbjct: 581 LINGLCKVRKMDQAYKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM 636



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 157/356 (44%), Gaps = 64/356 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K       L L  ++   G  P+  TYN+L+N     G +     +
Sbjct: 188 PTVVTYNTMLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKEL 247

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +LR      A  +  LI+G C + ++ EA+ L  ++ + G  P ++TY+T++ GLC+
Sbjct: 248 IQEMLRLGLEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCK 307

Query: 225 TGHTIVALNLFEEMANGN------------------GKFGVV-----------CKPNTVT 255
            G    A  L + M N N                  G  G               P+ VT
Sbjct: 308 WGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVT 367

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y T+IDGLC+ G +D A  L  +M     +PDV T+  L+ GFC   +   A  L  EM+
Sbjct: 368 YNTLIDGLCRMGDLDVAMRLKDEMIKHGPDPDVFTFTILVRGFCKLGNLPMAKELFDEML 427

Query: 316 DQGVQ-----------------------------------PDVVTFNVIMDELCKNGKMD 340
           ++G+Q                                   PD++T+NV +D L K G + 
Sbjct: 428 NRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGLHKLGNLK 487

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EAS L++ M+  G+ P+  T+++++    + G +  A+ +F+ M S G   +V +Y
Sbjct: 488 EASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSVVTY 543



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 135/279 (48%), Gaps = 40/279 (14%)

Query: 118 AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
           AK    +  L +F ++ S G+ PDL       NC               R+LR     D 
Sbjct: 130 AKKSMLEKCLLVFYKMVSKGMLPDLK------NC--------------NRVLRLLRDRD- 168

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
                        S I  A  ++  +   G +P V+TY+T+++  C+ G    AL L  +
Sbjct: 169 -------------SSIDVAREVYNVMVECGIRPTVVTYNTMLDSFCKQGKVQEALQLLLQ 215

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M     K G  C PN VTY  +++GL   G +++AKEL  +M    +     TY+ LI G
Sbjct: 216 MQ----KMG--CLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLGLEVSAYTYDPLIRG 269

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +C     +EA+ L  EM+ +G  P +VT+N IM  LCK G++ +A +LL++M+ + + P+
Sbjct: 270 YCEKGQLDEASRLGEEMLSRGAVPTLVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPD 329

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +++TL+ G+   G +  A  LF  +   G   +V +Y
Sbjct: 330 LVSYNTLIYGYTRLGNIGEAFLLFAELRFRGLVPSVVTY 368



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 129/261 (49%), Gaps = 8/261 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD MLN    P        + G L K         + + + + G  PDL TYN+ I+  
Sbjct: 422 LFDEMLNRGLQPDRFAYITRIVGEL-KLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGL 480

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K+G +     ++ ++L +   PD V +TS+I        + +A A+F ++ + G  P+V
Sbjct: 481 HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARAVFLEMLSKGIFPSV 540

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ LI+     G   +A+  F EM            PN +TY  +I+GLCK   +D+A
Sbjct: 541 VTYTVLIHSYAVRGRLKLAILHFFEMHEKG------VHPNVITYNALINGLCKVRKMDQA 594

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            + F +M+ K I+P+  TY  LI+  C    W EA  L  +M+D+ +QPD  T + ++  
Sbjct: 595 YKFFTEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHSALLKH 654

Query: 333 LCKNGKMDEASRLLELMILRG 353
           L K+ K     R LE +I  G
Sbjct: 655 LNKDYK-SHVVRHLENVIAAG 674



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 108/223 (48%), Gaps = 33/223 (14%)

Query: 207 GCKPNVITYSTLI-----NGLCRTGHTIVALNLFEEMANGN-------------GKFGVV 248
           G K + +TY+ ++     NGL R+ + ++   +  +M NG               K  ++
Sbjct: 76  GFKRSELTYAVILDILARNGLMRSAYCVMEKVVSVKMENGVVDVLILDLLLWIYAKKSML 135

Query: 249 CKPNTVTYTTIIDGLC---------------KEGFVDKAKELFLQMKDKNINPDVVTYNS 293
            K   V Y  +  G+                ++  +D A+E++  M +  I P VVTYN+
Sbjct: 136 EKCLLVFYKMVSKGMLPDLKNCNRVLRLLRDRDSSIDVAREVYNVMVECGIRPTVVTYNT 195

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           ++  FC      EA  LL++M   G  P+ VT+NV+++ L  +G++++A  L++ M+  G
Sbjct: 196 MLDSFCKQGKVQEALQLLLQMQKMGCLPNDVTYNVLVNGLSHSGELEQAKELIQEMLRLG 255

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +  T+  L+ G+C  G+++ A  L   M S G   T+ +Y
Sbjct: 256 LEVSAYTYDPLIRGYCEKGQLDEASRLGEEMLSRGAVPTLVTY 298


>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
          Length = 716

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 163/313 (52%), Gaps = 9/313 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A+   EAF     M+N    P   T  NL++G  + T  +   + +FK +    + PD+ 
Sbjct: 273 AMGKAEAF--LRQMVNKGVLPDNWTYNNLIYG-YSSTGQWKEAVRVFKEMRRHSILPDVV 329

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T N+L+   CK G++     V   +      PD  ++  ++ G   +  +++   LF  +
Sbjct: 330 TLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYKIMLNGYATKGCLVDMTDLFDLM 389

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              G  P++ T+S LI      G    A+ +F EM +     GV  KP+ VTYTT+I  L
Sbjct: 390 LGDGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRD----HGV--KPDVVTYTTVIAAL 443

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C+ G +D A E F QM D+ + PD   Y+ LI GFC      +A  L++E+M+ G++ D+
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDI 503

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V F+ I++ LCK G++ +A  + +L +  G +P+   +S LMDG+CL G++  A  +F +
Sbjct: 504 VFFSSIINNLCKLGRIMDAQNIFDLTVNVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDA 563

Query: 384 MESMGCKHTVFSY 396
           M S G +  V  Y
Sbjct: 564 MVSAGIEPNVVVY 576



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 157/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P +A  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 47  LRPEDAHDLLDE-LQRRGTPVLGRDLNGFLAALARAPSSAACGSGPALAVALFNRAASRA 105

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  +TY IL++C  +  R        G++LR+    D +    L+KG C   R
Sbjct: 106 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKR 165

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +YS L+  LC  G +  A +L   MA G    G VC P
Sbjct: 166 TDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSP 221

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V YTT+ID   KEG V+KA +LF +M  + I PD+VTY+S++H  C A    +A   L
Sbjct: 222 DVVAYTTVIDCFFKEGDVNKACDLFKEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFL 281

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++GV PD  T+N ++      G+  EA R+ + M    + P+  T + LM   C  
Sbjct: 282 RQMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKY 341

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 342 GKIKEARDVFDTMAMKGQNPDVFSY 366



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 149/303 (49%), Gaps = 7/303 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML      P + +F++L    A     D  + +F  +   G+ PD+ TY  +I   
Sbjct: 385 LFDLMLG-DGIAPDIYTFSVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYTTVIAAL 443

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C++G++        +++     PD  A+  LI+G C    +++A  L  ++   G + ++
Sbjct: 444 CRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKELILEIMNNGMRLDI 503

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + +S++IN LC+ G  + A N+F+   N      V   P+ V Y+ ++DG C  G ++KA
Sbjct: 504 VFFSSIINNLCKLGRIMDAQNIFDLTVN------VGQHPDAVVYSMLMDGYCLVGKMEKA 557

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F  M    I P+VV Y +L++G+C     +E   L  EM+ +G++P  + +N+I+D 
Sbjct: 558 LRVFDAMVSAGIEPNVVVYGTLVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDG 617

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           L   G+   A      M   G+  N  T++ ++ GF      + A  LF  + +M  K  
Sbjct: 618 LFVAGRTVPAKVKFHEMTESGIAINKCTYNIVLRGFFKNRCFDEAIFLFKELRAMNVKID 677

Query: 393 VFS 395
           + +
Sbjct: 678 IIT 680



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 143/301 (47%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y Y+ 
Sbjct: 415 DKAMIIFNEMRD-HGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 473

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F+S+I  LC   RIM+A  +F      G
Sbjct: 474 LIQGFCTHGSLLKAKELILEIMNNGMRLDIVFFSSIINNLCKLGRIMDAQNIFDLTVNVG 533

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + YS L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 534 QHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNVVVYGTLVNGYCKIG 587

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  K I P  + YN +I G   A     A     EM + G+  +  T+N
Sbjct: 588 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFVAGRTVPAKVKFHEMTESGIAINKCTYN 647

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++    KN   DEA  L + +    V  +  T +T++ G   T RV  AK+LF S+   
Sbjct: 648 IVLRGFFKNRCFDEAIFLFKELRAMNVKIDIITLNTMIAGMFQTRRVEEAKDLFASISRS 707

Query: 388 G 388
           G
Sbjct: 708 G 708



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 163/380 (42%), Gaps = 80/380 (21%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 128 AHRPELALAFFGQLLRTGLRVDIIIANHLLKG-FCEAKRTDEALDILLHRTPELGCVPDV 186

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++Y+IL+   C  G+      +L  +    +  +PD VA+T++I     E  + +A  LF
Sbjct: 187 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACDLF 246

Query: 201 TKLKAFGCKPNVITYSTLINGLCR-----------------------------------T 225
            ++   G  P+++TYS++++ LC+                                   T
Sbjct: 247 KEMVQRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGYSST 306

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A+ +F+EM   +        P+ VT   ++  LCK G + +A+++F  M  K  N
Sbjct: 307 GQWKEAVRVFKEMRRHS------ILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQN 360

Query: 286 PDVVTYNSLIHGF---------------------------------CYAN--DWNEANCL 310
           PDV +Y  +++G+                                  YAN    ++A  +
Sbjct: 361 PDVFSYKIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFSVLIKAYANCGMLDKAMII 420

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             EM D GV+PDVVT+  ++  LC+ GKMD+A      MI +GV P+   +  L+ GFC 
Sbjct: 421 FNEMRDHGVKPDVVTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCT 480

Query: 371 TGRVNHAKELFVSMESMGCK 390
            G +  AKEL + + + G +
Sbjct: 481 HGSLLKAKELILEIMNNGMR 500


>gi|449508067|ref|XP_004163208.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 830

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 99/294 (33%), Positives = 149/294 (50%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L     ++T  ++FK + S G  P   TYN +I CFC MG +    V+
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L++  +P+ + + +LI G C +  +  A  L   +K  G KP+  TY+ LI+G  R
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +LF  M     + G+   PN VTYT IIDG      VD A  LF +M +   
Sbjct: 495 GGKLEHATSLFYGMM----EHGI--SPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGN 548

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P   TYN +I GF   N  +EA     +M+ QG+ P+V+T+   +D LC+NG+   A +
Sbjct: 549 LPSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFK 608

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK--ELFVSMESMGCKHTVFSY 396
           +   M  R   PN  T+S+L+ G C  GR   A+   L   +   GC+  V +Y
Sbjct: 609 IFHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTY 662



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 148/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L SF  L   L K    D    ++ ++ ++G+ P L T+N +IN  CK GRV    +++ 
Sbjct: 167 LCSFTTLLIQLGKFDMVDLARDMYIKMLNSGIRPSLLTFNTMINILCKKGRVQEAKLIMS 226

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            I R    P+A  +TSLI G C    +  A A+F ++   GC PN +TYSTLINGLC  G
Sbjct: 227 HIFRYDAYPNAFTYTSLILGHCRNHNLDLAFAMFDRMVKDGCDPNSVTYSTLINGLCSEG 286

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+++ EEM           +P   TYT  +  LC  G   +A EL  +MK +   P
Sbjct: 287 RLEEAMDMLEEMVQKG------IEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRGCVP 340

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           ++ T+ +LI G      +  A  L  +M+  G+ P  VT+N ++++LC  G+ + A  + 
Sbjct: 341 NIQTFTALISGLSRDGKFEIAIGLYHKMLADGLVPTTVTYNALINQLCVEGRFETAFTIF 400

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M+  G  P+T T++ ++  FCL G +  A  +F  M   G    V +Y
Sbjct: 401 KWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITY 450



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 148/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I  ++      P   T  +L+ G   +  + D   ++F R+   G  P+  TY+ 
Sbjct: 219 QEAKLIMSHIFRYDAYPNAFTYTSLILGH-CRNHNLDLAFAMFDRMVKDGCDPNSVTYST 277

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  GR+     +L  +++    P    +T  +  LC      EA  L  K+K  G
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPLVSLCDAGCSSEAVELLGKMKKRG 337

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN+ T++ LI+GL R G   +A+ L+ +M       G+V  P TVTY  +I+ LC EG
Sbjct: 338 CVPNIQTFTALISGLSRDGKFEIAIGLYHKMLAD----GLV--PTTVTYNALINQLCVEG 391

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             + A  +F  M      P   TYN +I  FC   D  +A  +  +M+  G  P+V+T+N
Sbjct: 392 RFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYN 451

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   CK G ++ A RLLE+M   G+ P+  T++ L+ GF   G++ HA  LF  M   
Sbjct: 452 TLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEH 511

Query: 388 G 388
           G
Sbjct: 512 G 512



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/332 (29%), Positives = 160/332 (48%), Gaps = 36/332 (10%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF IF +ML+   S P   ++N +  C          + +F ++   G  P++ TYN LI
Sbjct: 396 AFTIFKWMLS-HGSLPSTQTYNEIIKCFCLMGDIQKAMVIFDKMLKAGSSPNVITYNTLI 454

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             +CK G +++   +L  +  +   PDA  +T LI G     ++  A +LF  +   G  
Sbjct: 455 YGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSRGGKLEHATSLFYGMMEHGIS 514

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMA-NGN-------------------------- 242
           PN +TY+ +I+G         AL LF +M  +GN                          
Sbjct: 515 PNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQTYNVMISGFSKTNSISEAENF 574

Query: 243 -GKF---GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            GK    G++  PN +TYT+ IDGLC+ G    A ++F +M+ +N  P++ TY+SLI+G 
Sbjct: 575 CGKMVKQGLL--PNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNYFPNLYTYSSLIYGL 632

Query: 299 CYANDWNEANC--LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           C      +A    LL  +   G +P+V T+  ++  LC  G+  EA +L+  M  +G+ P
Sbjct: 633 CQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCYEADQLVVSMQKKGLQP 692

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   +  L+ G C   +V  A  +F SM+++G
Sbjct: 693 SEEIYRALLIGECKNLKVESALNIFYSMDTLG 724



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 149/336 (44%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +FD M+     P  +T   L+ G L      +  + + + +   G+ P +YTY I +
Sbjct: 256 AFAMFDRMVKDGCDPNSVTYSTLING-LCSEGRLEEAMDMLEEMVQKGIEPTVYTYTIPL 314

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              C  G  S    +LG++ +    P+   FT+LI GL  + +   A  L+ K+ A G  
Sbjct: 315 VSLCDAGCSSEAVELLGKMKKRGCVPNIQTFTALISGLSRDGKFEIAIGLYHKMLADGLV 374

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMAN--------------------GNGKFGVVC 249
           P  +TY+ LIN LC  G    A  +F+ M +                    G+ +  +V 
Sbjct: 375 PTTVTYNALINQLCVEGRFETAFTIFKWMLSHGSLPSTQTYNEIIKCFCLMGDIQKAMVI 434

Query: 250 ---------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     PN +TY T+I G CK+G ++ A  L   MK   + PD  TY  LI GF  
Sbjct: 435 FDKMLKAGSSPNVITYNTLIYGYCKQGNLNNAMRLLEIMKGNGLKPDAWTYTELISGFSR 494

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
                 A  L   MM+ G+ P+ VT+  I+D      K+D+A  L   M+  G  P++ T
Sbjct: 495 GGKLEHATSLFYGMMEHGISPNHVTYTAIIDGYFNLAKVDDALALFWKMVESGNLPSSQT 554

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ ++ GF  T  ++ A+     M   G    V +Y
Sbjct: 555 YNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITY 590



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 88/303 (29%), Positives = 145/303 (47%), Gaps = 9/303 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            A  +F  M+    SP  +T   ++ G     K  D  L+LF ++  +G  P   TYN++
Sbjct: 500 HATSLFYGMMEHGISPNHVTYTAIIDGYFNLAK-VDDALALFWKMVESGNLPSSQTYNVM 558

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ F K   +S      G++++    P+ + +TS I GLC   R   A  +F +++    
Sbjct: 559 ISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKIFHEMEKRNY 618

Query: 209 KPNVITYSTLINGLCRTGHTIVA--LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            PN+ TYS+LI GLC+ G    A   NL   + +    +G  C+PN  TYTT++ GLC E
Sbjct: 619 FPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTH----YG--CEPNVDTYTTLVKGLCGE 672

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A +L + M+ K + P    Y +L+ G C       A  +   M   G Q  +  +
Sbjct: 673 GRCYEADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQLHLSDY 732

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  LCK   ++EA  + + M+ +  N +   ++ L+DG    G  +   +L   MES
Sbjct: 733 KALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLCLKLLHVMES 792

Query: 387 MGC 389
             C
Sbjct: 793 RNC 795



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/262 (29%), Positives = 122/262 (46%), Gaps = 8/262 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N++    +KT       +   ++   GL P++ TY   I+  C+ GR    F +
Sbjct: 550 PSSQTYNVMISGFSKTNSISEAENFCGKMVKQGLLPNVITYTSFIDGLCRNGRTGLAFKI 609

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA--LFTKLKAFGCKPNVITYSTLINGL 222
              + +  + P+   ++SLI GLC E R  +A    L  +L  +GC+PNV TY+TL+ GL
Sbjct: 610 FHEMEKRNYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGL 669

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C  G    A  L   M     K G+  +P+   Y  ++ G CK   V+ A  +F  M   
Sbjct: 670 CGEGRCYEADQLVVSMQ----KKGL--QPSEEIYRALLIGECKNLKVESALNIFYSMDTL 723

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
                +  Y +LI   C  N   EA C+   M+++    D V + V++D L K G+ D  
Sbjct: 724 GFQLHLSDYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGLLKEGETDLC 783

Query: 343 SRLLELMILRGVNPNTSTFSTL 364
            +LL +M  R    N  T+  L
Sbjct: 784 LKLLHVMESRNCTLNFQTYVML 805



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 64/224 (28%), Positives = 100/224 (44%), Gaps = 11/224 (4%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           SG     +I+  E FC       + P+    TSF      L +         +F  +   
Sbjct: 560 SGFSKTNSISEAENFCGKMVKQGLLPNVITYTSF---IDGLCRNGRTGLAFKIFHEMEKR 616

Query: 137 GLFPDLYTYNILINCFCKMGRVSHG--FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
             FP+LYTY+ LI   C+ GR      + +L R+      P+   +T+L+KGLC E R  
Sbjct: 617 NYFPNLYTYSSLIYGLCQEGRAEDAEMYNLLARLTHYGCEPNVDTYTTLVKGLCGEGRCY 676

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  L   ++  G +P+   Y  L+ G C+      ALN+F  M     +       +  
Sbjct: 677 EADQLVVSMQKKGLQPSEEIYRALLIGECKNLKVESALNIFYSMDTLGFQL------HLS 730

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            Y  +I  LCKE F+++A+ +F  M +K+ N D V +  L+ G 
Sbjct: 731 DYKALICALCKENFIEEAQCIFQTMLEKHWNSDEVAWTVLLDGL 774


>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
 gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
          Length = 363

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 93/261 (35%), Positives = 141/261 (54%), Gaps = 7/261 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ P++ TYN LI+ FC    V    +++  +  +   PD   + +LI GLC   R+ E 
Sbjct: 5   GIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEV 64

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             LF ++KA  C P+VITYS LI G C+     +A  LF++M            P+ VT+
Sbjct: 65  NRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDM------LKQAALPDVVTF 118

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            T+++G C  G VD A+ L  ++   + +PDV TY SL+ GFC      EA+ +L  M  
Sbjct: 119 PTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAK 178

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
              QP+VV +  ++D  C  GK   A +LLE M+  GV PN  T+ +L+ GFC TG +  
Sbjct: 179 GECQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEE 238

Query: 377 AKELFVSME-SMGCKHTVFSY 396
           A ++   +E +  CK  +F+Y
Sbjct: 239 AHKMLERLERNENCKADMFAY 259



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 148/294 (50%), Gaps = 11/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L      T   D+ L L + + +TG  PD+ TYN LI+  CK GRV     +
Sbjct: 8   PNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRL 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +      PD + ++ LI G C   RI  A  LF  +      P+V+T+ TL+ G C 
Sbjct: 68  FGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVVTFPTLVEGYCN 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L EE+   +      C P+  TYT+++DG CK   + +A  +  +M     
Sbjct: 128 AGLVDDAERLLEEIVASD------CSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGEC 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VV Y +LI  FC A     A  LL EM+  GVQP+ +T+  ++   C  G ++EA +
Sbjct: 182 QPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHK 241

Query: 345 LLELMILRGVNPNTSTFS--TLMDGFCLTGRVNHAKELFVSMESMGC--KHTVF 394
           +LE  + R  N     F+   +MDG C TGR++ A EL  +++  G   +H ++
Sbjct: 242 MLE-RLERNENCKADMFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIY 294



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 84/264 (31%), Positives = 134/264 (50%), Gaps = 7/264 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L KT     V  LF  + +    PD+ TY+ LI  FCK+ R++    +
Sbjct: 43  PDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTL 102

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+    PD V F +L++G C    + +A  L  ++ A  C P+V TY++L++G C+
Sbjct: 103 FDDMLKQAALPDVVTFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCK 162

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  + + MA G       C+PN V YT +ID  C  G    A +L  +M    +
Sbjct: 163 VKRMVEAHRVLKRMAKGE------CQPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGNGV 216

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            P+ +TY SLI GFC   D  EA+ +L  +  ++  + D+  + V+MD LC+ G+M  A 
Sbjct: 217 QPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLCRTGRMSAAL 276

Query: 344 RLLELMILRGVNPNTSTFSTLMDG 367
            LLE +   G  P    +  L+ G
Sbjct: 277 ELLEAIKQSGTPPRHDIYVALIRG 300



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 78/192 (40%), Positives = 110/192 (57%), Gaps = 8/192 (4%)

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLC 264
           +G +PN++TY++LI+G C T      L L EEM A G       C P+  TY T+IDGLC
Sbjct: 4   WGIEPNMVTYNSLIHGFCMTNGVDSTLLLMEEMTATG-------CLPDINTYNTLIDGLC 56

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G V +   LF +MK K  NPDV+TY+ LI GFC  +  N A  L  +M+ Q   PDVV
Sbjct: 57  KTGRVPEVNRLFGEMKAKFCNPDVITYSCLIGGFCKLDRINMACTLFDDMLKQAALPDVV 116

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TF  +++  C  G +D+A RLLE ++    +P+  T+++L+DGFC   R+  A  +   M
Sbjct: 117 TFPTLVEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRM 176

Query: 385 ESMGCKHTVFSY 396
               C+  V  Y
Sbjct: 177 AKGECQPNVVIY 188



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 80/187 (42%), Gaps = 16/187 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K K       + KR+      P++  Y  LI+ FC  G+ +  + +
Sbjct: 148 PDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGECQPNVVIYTALIDAFCSAGKPTVAYKL 207

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
           L  ++ +   P+A+ + SLI G C    + EA  +  +L +   CK ++  Y  +++GLC
Sbjct: 208 LEEMVGNGVQPNAITYRSLIGGFCGTGDLEEAHKMLERLERNENCKADMFAYRVMMDGLC 267

Query: 224 RTGHTIVALNLFEEMAN---------------GNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           RTG    AL L E +                 G        +PN   Y  +I  L +EG 
Sbjct: 268 RTGRMSAALELLEAIKQSGTPPRHDIYVALIRGEMTLSRKGRPNAKVYEAVIQELAREGR 327

Query: 269 VDKAKEL 275
            +KA  L
Sbjct: 328 HEKANAL 334



 Score = 43.1 bits (100), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 16/157 (10%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN-STGLFPD 141
           +A  P  A+ + + M+     P  +T +  L G    T   +    + +RL  +     D
Sbjct: 197 SAGKPTVAYKLLEEMVGNGVQPNAIT-YRSLIGGFCGTGDLEEAHKMLERLERNENCKAD 255

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           ++ Y ++++  C+ GR+S    +L  I +S   P    + +LI+G    SR         
Sbjct: 256 MFAYRVMMDGLCRTGRMSAALELLEAIKQSGTPPRHDIYVALIRGEMTLSR--------- 306

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
                  +PN   Y  +I  L R G    A  L +E+
Sbjct: 307 -----KGRPNAKVYEAVIQELAREGRHEKANALSDEL 338


>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Vitis vinifera]
          Length = 718

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/270 (35%), Positives = 148/270 (54%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           LSL + +   G  P + TYN  I   CK+GR+S     L  +L +   PD V++ +LI G
Sbjct: 324 LSLQEEMVLKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYG 383

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    +M+A  LF +L++    P ++TY+TL++GLCR G   VA  L  EM N      
Sbjct: 384 YCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEG---- 439

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+ VTYT +++G CK G +  A+E F +M  + +  D   Y + I G     D + 
Sbjct: 440 --IAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSR 497

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM+ +G  PD++ +NV++D LCK G ++EAS LL+ M+  GV P+  T+++++ 
Sbjct: 498 AFSLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIH 557

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                GR+   +E+F  M S G   +V +Y
Sbjct: 558 AHLENGRLRKGREIFYEMLSKGLTPSVVTY 587



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 154/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +   +FD M+  R SP  + + N +   L         + +++ +   G+ P + TYN L
Sbjct: 182 QCLSVFDKMIKSRLSPD-VKNCNRILRILRDKDLMSKAVEVYRTMGEFGIKPTIVTYNTL 240

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +CK G+V  G  +L  + R    P+ V +  LI GL  +    +A  L  ++   G 
Sbjct: 241 LDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFEQAKGLIGEMLKTGL 300

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K +  TY+ LI G    G    AL+L EEM            P   TY + I GLCK G 
Sbjct: 301 KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGA------SPTVATYNSFIYGLCKLGR 354

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A +    M   N+ PDVV+YN+LI+G+C   +  +A  L  E+    + P +VT+N 
Sbjct: 355 MSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNT 414

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC+ G+++ A +L   MI  G+ P+  T++ L++G C  G ++ A+E F  M   G
Sbjct: 415 LLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEG 474

Query: 389 CKHTVFSY 396
            +   ++Y
Sbjct: 475 LELDSYAY 482



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 156/311 (50%), Gaps = 12/311 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD + ++   P  +T +N L   L +    +    L   + + G+ PD+ TY IL
Sbjct: 392 KAFLLFDELRSIYLFPTIVT-YNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTIL 450

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  CKMG +S        +L      D+ A+ + I G         A +L  ++ A G 
Sbjct: 451 VNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFSLQEEMLAKGF 510

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++I Y+ +++GLC+ G+   A  L ++M +     GV+  P+ VTYT+II    + G 
Sbjct: 511 PPDLIIYNVVVDGLCKLGNLEEASELLQKMVSD----GVI--PDYVTYTSIIHAHLENGR 564

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + K +E+F +M  K + P VVTY  LIHG         A     EM ++G+ P+V+T+N 
Sbjct: 565 LRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITYNS 624

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK  +MD+A      M+ +G+ PN  +++ L++  C  G    A  L+  M   G
Sbjct: 625 LINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRG 684

Query: 389 -----CKHTVF 394
                C H+  
Sbjct: 685 VQPDSCTHSAL 695



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 155/337 (45%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+ ++ + P + ++N     L K       +     + +  L PD+ +YN L
Sbjct: 322 EALSLQEEMV-LKGASPTVATYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTL 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +C++G +   F++   +      P  V + +L+ GLC +  +  A  L  ++   G 
Sbjct: 381 IYGYCRLGNLMKAFLLFDELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGI 440

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            P+++TY+ L+NG C+ G   +A   F+EM +               G  K G   +   
Sbjct: 441 APDIVTYTILVNGSCKMGSLSMAQEFFDEMLHEGLELDSYAYATRIVGELKLGDTSRAFS 500

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ + Y  ++DGLCK G +++A EL  +M    + PD VTY S+IH   
Sbjct: 501 LQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHL 560

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 +   +  EM+ +G+ P VVT+ V++      G+++ A      M  +G+ PN  
Sbjct: 561 ENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVI 620

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+++L++G C   R++ A   F  M   G     +SY
Sbjct: 621 TYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSY 657



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/223 (32%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           SL + + + G  PDL  YN++++  CK+G +     +L +++     PD V +TS+I   
Sbjct: 500 SLQEEMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAH 559

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
               R+ +   +F ++ + G  P+V+TY+ LI+G    G    A   F EM       G+
Sbjct: 560 LENGRLRKGREIFYEMLSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEK----GI 615

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +  PN +TY ++I+GLCK   +D+A   F +M +K I P+  +Y  LI+  C   +W EA
Sbjct: 616 L--PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEA 673

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
             L  +M+D+GVQPD  T + ++ +L K+ K+ +A R LE ++
Sbjct: 674 LSLYKQMLDRGVQPDSCTHSALLKQLGKDCKL-QAVRQLESLL 715



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 75/251 (29%), Positives = 128/251 (50%), Gaps = 6/251 (2%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           ++LI  + K   V     V  ++++S  +PD      +++ L  +  + +A  ++  +  
Sbjct: 168 DLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMGE 227

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           FG KP ++TY+TL++  C+ G     L+L  EM          C PN VTY  +I+GL K
Sbjct: 228 FGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRG------CAPNDVTYNVLINGLSK 281

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G  ++AK L  +M    +     TYN LI+G+       EA  L  EM+ +G  P V T
Sbjct: 282 KGEFEQAKGLIGEMLKTGLKVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVAT 341

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N  +  LCK G+M +A + L  M+   + P+  +++TL+ G+C  G +  A  LF  + 
Sbjct: 342 YNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDELR 401

Query: 386 SMGCKHTVFSY 396
           S+    T+ +Y
Sbjct: 402 SIYLFPTIVTY 412



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            +LL    +K    +  LS+F ++  + L PD+   N ++        +S    V   + 
Sbjct: 167 LDLLIWVYSKKSMVEQCLSVFDKMIKSRLSPDVKNCNRILRILRDKDLMSKAVEVYRTMG 226

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P  V + +L+   C   ++ +   L ++++  GC PN +TY+ LINGL + G   
Sbjct: 227 EFGIKPTIVTYNTLLDSYCKGGKVQQGLDLLSEMQRRGCAPNDVTYNVLINGLSKKGEFE 286

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L  EM     K G+  K +  TY  +I G   +G + +A  L  +M  K  +P V 
Sbjct: 287 QAKGLIGEML----KTGL--KVSAYTYNPLIYGYFNKGMLAEALSLQEEMVLKGASPTVA 340

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNS I+G C     ++A   L +M+   + PDVV++N ++   C+ G + +A  L + +
Sbjct: 341 TYNSFIYGLCKLGRMSDAMQQLSDMLANNLLPDVVSYNTLIYGYCRLGNLMKAFLLFDEL 400

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               + P   T++TL+DG C  G +  A++L V M + G    + +Y
Sbjct: 401 RSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTY 447



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF  ML+   +P  +T   L+ G   K +  +     F  +   G+ P++ TYN LIN  
Sbjct: 571 IFYEMLSKGLTPSVVTYTVLIHGHAGKGR-LERAFIYFSEMQEKGILPNVITYNSLINGL 629

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+ R+   +     ++     P+  ++T LI   C      EA +L+ ++   G +P+ 
Sbjct: 630 CKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSLYKQMLDRGVQPDS 689

Query: 213 ITYSTLINGLCR 224
            T+S L+  L +
Sbjct: 690 CTHSALLKQLGK 701



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 45/95 (47%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K +  D   + F  +   G+FP+ Y+Y ILIN  C MG       +
Sbjct: 617 PNVITYNSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEALSL 676

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
             ++L     PD+   ++L+K L  + ++     L
Sbjct: 677 YKQMLDRGVQPDSCTHSALLKQLGKDCKLQAVRQL 711


>gi|255660776|gb|ACU25557.1| pentatricopeptide repeat-containing protein [Verbena perennis]
          Length = 418

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++  M  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 148/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++  + +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKLMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++ M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKLMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|255660774|gb|ACU25556.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
          Length = 418

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++ D++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSADLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 148/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              ++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +         + +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSADLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|410109919|gb|AFV61039.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           duartei]
          Length = 412

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 158 VVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 218 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 271

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  +++  CK G +D A    + MI   +  
Sbjct: 272 GLCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRL 331

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 332 DEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTY 371



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + + G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRXGDLDEGFX 179

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 180 LKSXMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSVKG 293

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI+G C   D + A      M+ + ++ D V +  ++   C+ G+  +A 
Sbjct: 294 LKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAE 353

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 354 KMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTY 406



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 156 PSVVSYNTLMNGYIRXGDLDEGFXLKSXMLASGVQPDVYTYSVLINGLCKESKMDDANEL 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 275

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+I+G CKEG +D A E   +M  +NI
Sbjct: 276 KGDLKQAHHLIDEMSVKG------LKPDKITYTTLINGCCKEGDLDSAFEHRKRMIQENI 329

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G +   S+
Sbjct: 330 RLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKXGDVWXGSK 389

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 390 LLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 247 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSVKGLKPDKITYTTLI 305

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N  CK G +   F    R+++     D VA+T+LI G C E R ++A  +  ++ + G K
Sbjct: 306 NGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGXCQEGRSVDAEKMLREMLSVGLK 365

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 366 PDARTYTMIINEFCKXGDVWXGSKLLKEMQRDGHVPSVVTYNVLMNG 412


>gi|413915966|gb|AFW55898.1| hypothetical protein ZEAMMB73_909442, partial [Zea mays]
          Length = 694

 Score =  170 bits (430), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 111/353 (31%), Positives = 161/353 (45%), Gaps = 47/353 (13%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG++      EA  +F  M  M  SP  +T +N L     K    + V  L   +  +G 
Sbjct: 212 QGELV-----EARALFVRMKAMGCSPDVVT-YNSLIDGYGKCGELEEVELLVSEMRKSGC 265

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             D+ TYN LINCF K G +   +   G + R     + V  ++ +   C E  + EA  
Sbjct: 266 AADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVVTLSTFVDAFCKEGLVREAMK 325

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF +++  G  PN  TY++L++G C+ G    A+ L +EM +     G+V  PN VTYT 
Sbjct: 326 LFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQ----GLV--PNVVTYTV 379

Query: 259 IIDGLCKEGFV-----------------------------------DKAKELFLQMKDKN 283
           ++DGLCKEG V                                   ++A +L  +MK+K 
Sbjct: 380 MVDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKG 439

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  DV  Y +LI G C     +EA  LL +M D G++P+ V +  IMD   K GK  EA 
Sbjct: 440 MELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAV 499

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL  +   G+ PN  T+  L+DG C  G +  A   F  M  +G    V  Y
Sbjct: 500 ALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVY 552



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 99/293 (33%), Positives = 155/293 (52%), Gaps = 10/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N +   LA+ +    V  LF+ L +    P+++T+NI+I+  CK G +     
Sbjct: 165 PPNTRTCNHILLRLARNRQGGLVRRLFEHLPA----PNVFTFNIVIDFLCKQGELVEARA 220

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+     +PD V + SLI G      + E   L ++++  GC  +V+TY+ LIN   
Sbjct: 221 LFVRMKAMGCSPDVVTYNSLIDGYGKCGELEEVELLVSEMRKSGCAADVVTYNALINCFS 280

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A + F EM     + GV+   N VT +T +D  CKEG V +A +LF QM+ + 
Sbjct: 281 KFGWIEKAYSYFGEMK----RLGVMA--NVVTLSTFVDAFCKEGLVREAMKLFAQMRVRG 334

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+  TY SL+ G C A   ++A  LL EM+ QG+ P+VVT+ V++D LCK GK+  A 
Sbjct: 335 MMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDGLCKEGKVAVAD 394

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L LM   GV  N   ++TL+ G  +      A +L   M++ G +  V  Y
Sbjct: 395 DVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELDVSLY 447



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 142/262 (54%), Gaps = 6/262 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           + LF ++   G+ P+ +TY  L++  CK GR+    V+L  ++     P+ V +T ++ G
Sbjct: 324 MKLFAQMRVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVMVDG 383

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC E ++  A  + + ++  G K N + Y+TLI+G     ++  AL+L  EM N   +  
Sbjct: 384 LCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGMELD 443

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           V        Y T+I GLCK   +D+AK L  +M D  + P+ V Y +++  F  A   +E
Sbjct: 444 VSL------YGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESE 497

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  LL ++ D G+QP+VVT+  ++D LCK G + EA    + M   G++PN   ++TL+D
Sbjct: 498 AVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLID 557

Query: 367 GFCLTGRVNHAKELFVSMESMG 388
           GFC  G ++ A  L   M   G
Sbjct: 558 GFCKIGSLSKAVHLMNEMVDKG 579



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/267 (30%), Positives = 133/267 (49%), Gaps = 6/267 (2%)

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           K+ +  L L   + + G+  D+  Y  LI   CK+ ++     +L ++      P+ V +
Sbjct: 423 KNSERALDLLNEMKNKGMELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIY 482

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           T+++       +  EA AL  K+   G +PNV+TY  LI+GLC+ G    A++ F++M  
Sbjct: 483 TTIMDAFFKAGKESEAVALLHKIPDSGLQPNVVTYCALIDGLCKAGSIYEAISHFDKMR- 541

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
              + G+   PN   YTT+IDG CK G + KA  L  +M DK ++ D V Y SLI G   
Sbjct: 542 ---ELGL--DPNVQVYTTLIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMK 596

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             D   A  L  +M++ G+Q D+  +   +   C    M EA  +L  MI  G+ P+ + 
Sbjct: 597 QGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTGITPDKTA 656

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++ L+  +   G +  A  L   MES+
Sbjct: 657 YNCLIRKYQKLGNMEEASSLQNEMESV 683



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 85/335 (25%), Positives = 149/335 (44%), Gaps = 42/335 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M  +R   P   ++  L     K    D  + L   +   GL P++ TY ++
Sbjct: 322 EAMKLFAQM-RVRGMMPNEFTYTSLVDGTCKAGRLDDAIVLLDEMVHQGLVPNVVTYTVM 380

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG---------------------- 186
           ++  CK G+V+    VL  + R+    + + +T+LI G                      
Sbjct: 381 VDGLCKEGKVAVADDVLSLMERAGVKANELLYTTLIHGHFMNKNSERALDLLNEMKNKGM 440

Query: 187 -------------LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
                        LC   ++ EA +L  K+   G +PN + Y+T+++   + G    A+ 
Sbjct: 441 ELDVSLYGTLIWGLCKVQKLDEAKSLLHKMDDCGLRPNTVIYTTIMDAFFKAGKESEAVA 500

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L  ++ +         +PN VTY  +IDGLCK G + +A   F +M++  ++P+V  Y +
Sbjct: 501 LLHKIPDSG------LQPNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTT 554

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI GFC     ++A  L+ EM+D+G+  D V +  ++D   K G +  A  L   MI  G
Sbjct: 555 LIDGFCKIGSLSKAVHLMNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETG 614

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  +   ++  + GFC    +  A+ +   M   G
Sbjct: 615 LQLDLYCYTCFISGFCNMNMMQEARGVLSEMIGTG 649



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 10/217 (4%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           F +L+  L     + +A     +++     PN  T + ++  L R     +   LFE + 
Sbjct: 136 FDTLLSLLADHGLLDDAVRALARVRQLRVPPNTRTCNHILLRLARNRQGGLVRRLFEHLP 195

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      PN  T+  +ID LCK+G + +A+ LF++MK    +PDVVTYNSLI G+ 
Sbjct: 196 ----------APNVFTFNIVIDFLCKQGELVEARALFVRMKAMGCSPDVVTYNSLIDGYG 245

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              +  E   L+ EM   G   DVVT+N +++   K G +++A      M   GV  N  
Sbjct: 246 KCGELEEVELLVSEMRKSGCAADVVTYNALINCFSKFGWIEKAYSYFGEMKRLGVMANVV 305

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T ST +D FC  G V  A +LF  M   G     F+Y
Sbjct: 306 TLSTFVDAFCKEGLVREAMKLFAQMRVRGMMPNEFTY 342



 Score = 45.8 bits (107), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 37/169 (21%), Positives = 65/169 (38%), Gaps = 35/169 (20%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K       +S F ++   GL P++  Y  LI+ FCK+G +S    +
Sbjct: 512 PNVVTYCALIDGLCKAGSIYEAISHFDKMRELGLDPNVQVYTTLIDGFCKIGSLSKAVHL 571

Query: 165 LGRILRSCFTPDAVAFTSL-----------------------------------IKGLCA 189
           +  ++    + D V +TSL                                   I G C 
Sbjct: 572 MNEMVDKGMSLDKVVYTSLIDGHMKQGDLQGAFALKAKMIETGLQLDLYCYTCFISGFCN 631

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            + + EA  + +++   G  P+   Y+ LI    + G+   A +L  EM
Sbjct: 632 MNMMQEARGVLSEMIGTGITPDKTAYNCLIRKYQKLGNMEEASSLQNEM 680


>gi|218191892|gb|EEC74319.1| hypothetical protein OsI_09597 [Oryza sativa Indica Group]
          Length = 1167

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L     K + +DT   +   +   G   +  TYN+LI   C+ G V   F  
Sbjct: 115 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 174

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   + +LI GLC   R  EA AL  ++     KPNV+ Y+ LI+G  R
Sbjct: 175 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 234

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  + +EM           +PN +TY  ++ GLCK G +D+A  L  QM   + 
Sbjct: 235 EGNADEAFKMIKEMVAAG------VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH 288

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +TYN +I G    ++  +A  LL EM + G+ P+V T+++++  LC++G+ ++AS 
Sbjct: 289 RPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASD 348

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LLE M  +G+ PN   ++ L+ G+C  G V+ A E+F  M  +     ++ Y
Sbjct: 349 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 400



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + D M      P  +   NL+ G + +  + D    + K + + G+ P+  TY+ 
Sbjct: 204 NEAKALLDEMSCAELKPNVVVYANLIDGFM-REGNADEAFKMIKEMVAAGVQPNKITYDN 262

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   CKMG++    ++L +++R    PD + +  +I+G        +A  L ++++  G
Sbjct: 263 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRLLSEMENAG 322

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV TYS +I+GLC++G    A +L EEM           KPN   Y  +I G C+EG
Sbjct: 323 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG------LKPNAFVYAPLISGYCREG 376

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A E+F +M   N+ PD+  YNSLI G        E+     +M ++G+ P+  T++
Sbjct: 377 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 436

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++    KNG ++ A +L++ M+  G+ PN   +  L++ +  +  +      F SM   
Sbjct: 437 GLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 496

Query: 388 G 388
           G
Sbjct: 497 G 497



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 138/268 (51%), Gaps = 7/268 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K+   + V S FK +   G+  D   Y ILI+     G +   F VL  I ++   PD  
Sbjct: 479 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVH 538

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            ++SLI GLC  +   +A  +  ++   G  PN++ Y+ LI+GLC++G    A N+F  +
Sbjct: 539 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 598

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                  G+V  PN VTYT++IDG CK G +  A  L+ +M    I PD   Y+ L  G 
Sbjct: 599 LAK----GLV--PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 652

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             A D  +A  L+ EM  +G    + +FN ++D  CK GKM E  +LL +++ RG+ PN 
Sbjct: 653 SSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 711

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            T   ++ G    G+++    +FV ++ 
Sbjct: 712 LTIENIISGLSEAGKLSEVHTIFVELQQ 739



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N+L   L ++   +      K +   GL PD +TY  LIN  CK  R +    +L  
Sbjct: 153 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 212

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +  +   P+ V + +LI G   E    EA  +  ++ A G +PN ITY  L+ GLC+ G 
Sbjct: 213 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 272

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  L ++M   + +      P+T+TY  II+G  +      A  L  +M++  I+P+
Sbjct: 273 MDRASLLLKQMVRDSHR------PDTITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPN 326

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V TY+ +IHG C + +  +A+ LL EM  +G++P+   +  ++   C+ G +  A  + +
Sbjct: 327 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 386

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M    V P+   +++L+ G    GRV  + + F  M+  G     F+Y
Sbjct: 387 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 435



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/383 (27%), Positives = 170/383 (44%), Gaps = 59/383 (15%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPN-------------EAFCIFDYMLNMRPSPPPLT 108
           DRASL   LK+  + S + D   IT N             +AF +   M N   SP   T
Sbjct: 274 DRASL--LLKQMVRDSHRPD--TITYNLIIEGHFRHHNKKDAFRLLSEMENAGISPNVYT 329

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            ++++   L ++   +    L + + + GL P+ + Y  LI+ +C+ G VS    +  ++
Sbjct: 330 -YSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKM 388

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +    PD   + SLI GL    R+ E+   F +++  G  PN  TYS LI+G  + G  
Sbjct: 389 TKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDL 448

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN--- 285
             A  L + M +         KPN V Y  +++   K   ++K    F  M D+ +    
Sbjct: 449 ESAEQLVQRMLDTG------LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 502

Query: 286 --------------------------------PDVVTYNSLIHGFCYANDWNEANCLLIE 313
                                           PDV  Y+SLI G C   D  +A  +L E
Sbjct: 503 RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 562

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  +GV P++V +N ++D LCK+G +  A  +   ++ +G+ PN  T+++L+DG C  G 
Sbjct: 563 MSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGD 622

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           +++A  L+  M + G     F Y
Sbjct: 623 ISNAFYLYNEMLATGITPDAFVY 645



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 159/324 (49%), Gaps = 43/324 (13%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M  +   P      +L+FG L+K    +     F ++   GL P+ +TY+ LI+ +
Sbjct: 384 IFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 442

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI---------------------KGLCAES 191
            K G +     ++ R+L +   P+ V +  L+                     +G+  ++
Sbjct: 443 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 502

Query: 192 RI-------------MEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           RI             MEAA  + ++++  G  P+V  YS+LI+GLC+T     A  + +E
Sbjct: 503 RIYGILIHNLSSSGNMEAAFRVLSEIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 562

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+    K GV   PN V Y  +IDGLCK G +  A+ +F  +  K + P+ VTY SLI G
Sbjct: 563 MS----KKGV--DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 616

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C   D + A  L  EM+  G+ PD   ++V+       G +++A  L+E M LRG + +
Sbjct: 617 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HAS 675

Query: 358 TSTFSTLMDGFCLTGRVNHAKELF 381
            S+F+ L+DGFC  G++    +L 
Sbjct: 676 ISSFNNLVDGFCKRGKMQETLKLL 699



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 152/316 (48%), Gaps = 22/316 (6%)

Query: 97  MLNMRPSPPPLTS----------------FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           M+   PSPP + +                 ++L     K+        +   +   GL P
Sbjct: 21  MIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGLAP 80

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            +   N L+    +   ++  + V   ++ +  +PD   +++LI+  C       A  + 
Sbjct: 81  SIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVL 140

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            +++  GC  N +TY+ LI GLCR+G    A    ++M +    +G+V  P+  TY  +I
Sbjct: 141 VEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMED----YGLV--PDGFTYGALI 194

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +GLCK    ++AK L  +M    + P+VV Y +LI GF    + +EA  ++ EM+  GVQ
Sbjct: 195 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 254

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+ +T++ ++  LCK G+MD AS LL+ M+     P+T T++ +++G         A  L
Sbjct: 255 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHNKKDAFRL 314

Query: 381 FVSMESMGCKHTVFSY 396
              ME+ G    V++Y
Sbjct: 315 LSEMENAGISPNVYTY 330



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 29/306 (9%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           S P +  ++ L   L KT   +    +   ++  G+ P++  YN LI+  CK G +S+  
Sbjct: 533 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 592

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   IL     P+ V +TSLI G C    I  A  L+ ++ A G  P+   YS L  G 
Sbjct: 593 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 652

Query: 223 CRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
              G    A+ L EEM   G+            ++  ++DG CK G + +  +L   +  
Sbjct: 653 SSAGDLEQAMFLIEEMFLRGHASIS--------SFNNLVDGFCKRGKMQETLKLLHVIMG 704

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------------------MMDQGVQPD 322
           + + P+ +T  ++I G   A   +E + + +E                   M++QG  P 
Sbjct: 705 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 764

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
            V  ++I D  CK G +D+A  L ++++ +      S++  ++D  C  G+++ A  L  
Sbjct: 765 DVVDDMIRDH-CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 823

Query: 383 SMESMG 388
            M+  G
Sbjct: 824 EMDKRG 829


>gi|115471647|ref|NP_001059422.1| Os07g0300200 [Oryza sativa Japonica Group]
 gi|34394343|dbj|BAC84898.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
 gi|50509027|dbj|BAD31989.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113610958|dbj|BAF21336.1| Os07g0300200 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 151/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L     K + +DT   +   +   G   +  TYN+LI   C+ G V   F  
Sbjct: 242 PDVYTYSTLIEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 301

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   + +LI GLC   R  EA AL  ++     KPNV+ Y+ LI+G  R
Sbjct: 302 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMR 361

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  + +EM       GV  +PN +TY  ++ GLCK G +D+A  L  QM   + 
Sbjct: 362 EGNADEAFKMIKEMVAA----GV--QPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSH 415

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +TYN +I G    +   +A  LL EM + G+ P+V T+++++  LC++G+ ++AS 
Sbjct: 416 RPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASD 475

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LLE M  +G+ PN   ++ L+ G+C  G V+ A E+F  M  +     ++ Y
Sbjct: 476 LLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 527



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + D M      P  +   NL+ G + +  + D    + K + + G+ P+  TY+ 
Sbjct: 331 NEAKALLDEMSCAELKPNVVVYANLIDGFM-REGNADEAFKMIKEMVAAGVQPNKITYDN 389

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   CKMG++    ++L +++R    PD + +  +I+G        +A  L ++++  G
Sbjct: 390 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAG 449

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV TYS +I+GLC++G    A +L EEM           KPN   Y  +I G C+EG
Sbjct: 450 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG------LKPNAFVYAPLISGYCREG 503

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A E+F +M   N+ PD+  YNSLI G        E+     +M ++G+ P+  T++
Sbjct: 504 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 563

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++    KNG ++ A +L++ M+  G+ PN   +  L++ +  +  +      F SM   
Sbjct: 564 GLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 623

Query: 388 G 388
           G
Sbjct: 624 G 624



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 138/268 (51%), Gaps = 7/268 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K+   + V S FK +   G+  D   Y ILI+     G +   F VL  I ++   PD  
Sbjct: 606 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVH 665

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            ++SLI GLC  +   +A  +  ++   G  PN++ Y+ LI+GLC++G    A N+F  +
Sbjct: 666 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 725

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                  G+V  PN VTYT++IDG CK G +  A  L+ +M    I PD   Y+ L  G 
Sbjct: 726 LAK----GLV--PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 779

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             A D  +A  L+ EM  +G    + +FN ++D  CK GKM E  +LL +++ RG+ PN 
Sbjct: 780 SSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 838

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            T   ++ G    G+++    +FV ++ 
Sbjct: 839 LTIENIISGLSEAGKLSEVHTIFVELQQ 866



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N+L   L ++   +      K +   GL PD +TY  LIN  CK  R +    +L  
Sbjct: 280 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 339

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +  +   P+ V + +LI G   E    EA  +  ++ A G +PN ITY  L+ GLC+ G 
Sbjct: 340 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 399

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  L ++M   + +      P+T+TY  II+G  +      A  L  +M++  I+P+
Sbjct: 400 MDRASLLLKQMVRDSHR------PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 453

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V TY+ +IHG C + +  +A+ LL EM  +G++P+   +  ++   C+ G +  A  + +
Sbjct: 454 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 513

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M    V P+   +++L+ G    GRV  + + F  M+  G     F+Y
Sbjct: 514 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 562



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 168/381 (44%), Gaps = 55/381 (14%)

Query: 62  DRASLEQFLKERCKSSGQGDITAI-----------TPNEAFCIFDYMLNMRPSPPPLTSF 110
           DRASL   LK+  + S + D               +  +AF +   M N   SP   T +
Sbjct: 401 DRASL--LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYT-Y 457

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           +++   L ++   +    L + + + GL P+ + Y  LI+ +C+ G VS    +  ++ +
Sbjct: 458 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 517

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD   + SLI GL    R+ E+   F +++  G  PN  TYS LI+G  + G    
Sbjct: 518 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 577

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN----- 285
           A  L + M +         KPN V Y  +++   K   ++K    F  M D+ +      
Sbjct: 578 AEQLVQRMLDTG------LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 631

Query: 286 ------------------------------PDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
                                         PDV  Y+SLI G C   D  +A  +L EM 
Sbjct: 632 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 691

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +GV P++V +N ++D LCK+G +  A  +   ++ +G+ PN  T+++L+DG C  G ++
Sbjct: 692 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 751

Query: 376 HAKELFVSMESMGCKHTVFSY 396
           +A  L+  M + G     F Y
Sbjct: 752 NAFYLYNEMLATGITPDAFVY 772



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 158/324 (48%), Gaps = 43/324 (13%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M  +   P      +L+FG L+K    +     F ++   GL P+ +TY+ LI+ +
Sbjct: 511 IFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 569

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI---------------------KGLCAES 191
            K G +     ++ R+L +   P+ V +  L+                     +G+  ++
Sbjct: 570 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 629

Query: 192 RI-------------MEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           RI             MEAA  + + ++  G  P+V  YS+LI+GLC+T     A  + +E
Sbjct: 630 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 689

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+    K GV   PN V Y  +IDGLCK G +  A+ +F  +  K + P+ VTY SLI G
Sbjct: 690 MS----KKGV--DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 743

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C   D + A  L  EM+  G+ PD   ++V+       G +++A  L+E M LRG + +
Sbjct: 744 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HAS 802

Query: 358 TSTFSTLMDGFCLTGRVNHAKELF 381
            S+F+ L+DGFC  G++    +L 
Sbjct: 803 ISSFNNLVDGFCKRGKMQETLKLL 826



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 152/316 (48%), Gaps = 22/316 (6%)

Query: 97  MLNMRPSPPPLTS----------------FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           M+   PSPP + +                 ++L     K+        +   +   G+ P
Sbjct: 148 MIRAYPSPPVVLASIHRALSDSGHRSPAVLDVLVDTYKKSGRVQDAAEVVLMMRDRGMAP 207

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            +   N L+    +   ++  + V   ++ +  +PD   +++LI+  C       A  + 
Sbjct: 208 SIRCCNALLKDLLRADAMALLWKVREFMVGAGISPDVYTYSTLIEAYCKVREFDTAKKVL 267

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            +++  GC  N +TY+ LI GLCR+G    A    ++M +    +G+V  P+  TY  +I
Sbjct: 268 VEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMED----YGLV--PDGFTYGALI 321

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +GLCK    ++AK L  +M    + P+VV Y +LI GF    + +EA  ++ EM+  GVQ
Sbjct: 322 NGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQ 381

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+ +T++ ++  LCK G+MD AS LL+ M+     P+T T++ +++G         A  L
Sbjct: 382 PNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRL 441

Query: 381 FVSMESMGCKHTVFSY 396
              ME+ G    V++Y
Sbjct: 442 LSEMENAGISPNVYTY 457



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 29/306 (9%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           S P +  ++ L   L KT   +    +   ++  G+ P++  YN LI+  CK G +S+  
Sbjct: 660 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 719

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   IL     P+ V +TSLI G C    I  A  L+ ++ A G  P+   YS L  G 
Sbjct: 720 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 779

Query: 223 CRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
              G    A+ L EEM   G+            ++  ++DG CK G + +  +L   +  
Sbjct: 780 SSAGDLEQAMFLIEEMFLRGHASIS--------SFNNLVDGFCKRGKMQETLKLLHVIMG 831

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------------------MMDQGVQPD 322
           + + P+ +T  ++I G   A   +E + + +E                   M++QG  P 
Sbjct: 832 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 891

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
            V  ++I D  CK G +D+A  L ++++ +      S++  ++D  C  G+++ A  L  
Sbjct: 892 DVVDDMIRDH-CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 950

Query: 383 SMESMG 388
            M+  G
Sbjct: 951 EMDKRG 956



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 129/315 (40%), Gaps = 61/315 (19%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF I D M + +   P +  +N L   L K+       ++F  + + GL P+  TY  L
Sbjct: 682 KAFGILDEM-SKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSL 740

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAV------------------------------ 178
           I+  CK+G +S+ F +   +L +  TPDA                               
Sbjct: 741 IDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRGH 800

Query: 179 ----AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG-----HTI 229
               +F +L+ G C   ++ E   L   +   G  PN +T   +I+GL   G     HTI
Sbjct: 801 ASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNALTIENIISGLSEAGKLSEVHTI 860

Query: 230 -VAL-------------NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
            V L             +LF +M N  GK      P  V    I D  CKEG +DKA  L
Sbjct: 861 FVELQQKTSESAARHFSSLFMDMIN-QGKI-----PLDVVDDMIRDH-CKEGNLDKALML 913

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
              +  K+      +Y +++   C     +EA  LL EM  +G+ P      +++  L  
Sbjct: 914 RDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLKEMDKRGICPSENQCLILLTNLHT 973

Query: 336 NGKMDEASRLLELMI 350
           +G + E + +L+ M+
Sbjct: 974 SGYIQEHNTVLDNML 988


>gi|410109937|gb|AFV61048.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           pusilla]
          Length = 431

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+  TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK+G VD A E++ +M  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +AN L+ EM+ +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQANDLIDEMVMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 390



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDXYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++ M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 259 KKGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQANDLIDEMVMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V     L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTY 425



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDXYTYSVLINGLCKESKMDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C + R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKKGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM           KP+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQANDLIDEMVMKG------LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + SR
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSR 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRNGHVPSVVTYNVLMNG 431



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   +   GL PD  TY  LI
Sbjct: 266 AMEIYKRMLSQSLLPDLITYNTLIYG-LCKKGDLKQANDLIDEMVMKGLKPDKITYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSRLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|255660802|gb|ACU25570.1| pentatricopeptide repeat-containing protein [Glandularia
           microphylla]
          Length = 418

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G V  A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 152/285 (53%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWGLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  ++A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVVLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 149/273 (54%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +    +RPS   + SFN L     K    D    L   + ++G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWGLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R++ A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNGRVVLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGSCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETALEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYVPSVVT 418


>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
 gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
 gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
          Length = 543

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 159/298 (53%), Gaps = 6/298 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R   P + ++N L   L K+   +    L + +    + P+L TYN LI  +CK G 
Sbjct: 199 MSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTGC 258

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
                 ++ R+++S   PD V F SLI G C +S+I +A  +   +K   C PN++TY+ 
Sbjct: 259 TGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNV 318

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC  G    A  L  EM +G G       P+ +TY ++I   C+   +++A ++  
Sbjct: 319 LISGLCDAGRANEACELLSEM-DGRGIL-----PDIITYNSLIGIFCRNFQIEQAFQIQN 372

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M ++ + PD ++Y +L      +  ++EA  LL  M D G  P++ TFN +M+ LC + 
Sbjct: 373 LMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGLCCSR 432

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++DEA  LL +M   G +P  ST+  L+ G C  GRV+ AKE+ V M S G +  V S
Sbjct: 433 RLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSS 490



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 178/389 (45%), Gaps = 56/389 (14%)

Query: 56  LRLTVKDRASLEQFLKERCKSSGQG-DITAITPNE---AFC-------IFDYMLNM--RP 102
           LR  VK R   + +   R +  GQ  D   IT N     FC        F  +  M  R 
Sbjct: 76  LRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMKERG 135

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
             P + + + +   L  T +    +  F+   S    PD   +NIL++  CK  ++S   
Sbjct: 136 HSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLCKANQLSEAR 193

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            ++  +      PD V + SLI GLC   R+ EA  L   +     +PN++TY+TLI G 
Sbjct: 194 QMIEEMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGY 253

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+TG T +A  L E M            P+ VT+ ++I G C++  +DKA E+   MK  
Sbjct: 254 CKTGCTGLAHQLIERMIQSG------THPDVVTFNSLISGFCQKSKIDKACEVLHLMKKG 307

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P++VTYN LI G C A   NEA  LL EM  +G+ PD++T+N ++   C+N ++++A
Sbjct: 308 LCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQA 367

Query: 343 SRLLELMILRGVNP-----------------------------------NTSTFSTLMDG 367
            ++  LM+ RGV P                                   N  TF++LM+G
Sbjct: 368 FQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEG 427

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C + R++ A+ L   M  +GC     +Y
Sbjct: 428 LCCSRRLDEARHLLAVMRRVGCDPAASTY 456



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/287 (32%), Positives = 149/287 (51%), Gaps = 9/287 (3%)

Query: 111 NLLFGCLAKTKHYDTVLSLFK-RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           N L   L K + +     +F+  L       +  TYN LI  FCK G +   F +L  + 
Sbjct: 73  NCLLRTLVKARRHHQAYQIFRDELLGQHCDTNHITYNTLIGGFCKAGDMERAFQLLAEMK 132

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
               +PD V  +S+++ LC    +  A   F +  +  C P+ + ++ L++GLC+     
Sbjct: 133 ERGHSPDVVTHSSIVQALCNTGNLSRAMQYFRE--SVECAPDSVLFNILVHGLCKANQLS 190

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + EEM+    + G+V  P+ VTY ++IDGLCK   +++A++L   M  + + P++V
Sbjct: 191 EARQMIEEMS----ERGIV--PDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLV 244

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI+G+C       A+ L+  M+  G  PDVVTFN ++   C+  K+D+A  +L LM
Sbjct: 245 TYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLM 304

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                 PN  T++ L+ G C  GR N A EL   M+  G    + +Y
Sbjct: 305 KKGLCAPNLVTYNVLISGLCDAGRANEACELLSEMDGRGILPDIITY 351



 Score = 45.1 bits (105), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 37/165 (22%), Positives = 62/165 (37%), Gaps = 39/165 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF + D M +   + P L +FN L   L  ++  D    L   +   G  P   TY +
Sbjct: 400 DEAFALLDNMFDA-GAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEV 458

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   CK GRV                                    +A  +   + + G
Sbjct: 459 LVTGLCKAGRVD-----------------------------------DAKEVLVMMVSEG 483

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
            +P V +  T+++ L R G   +AL+ F+++     K    C P+
Sbjct: 484 IQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESK---ACDPS 525


>gi|255660796|gb|ACU25567.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 418

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++  G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G+ PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M ++G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTY 384



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/273 (34%), Positives = 146/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   +  +G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANXLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM            P+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG------LXPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM++ G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418


>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
          Length = 962

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 151/290 (52%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S N L   LAK +  +   +L+K++ ++G+ P L T+N LIN   K G+V    ++L 
Sbjct: 205 LYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILS 264

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I +   +PD   +TSLI G C    +  A  +F ++   GC PN +TYSTLINGLC  G
Sbjct: 265 QIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEG 324

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL++ EEM           +P   TYT  I  LC     ++A EL  +MK +   P
Sbjct: 325 RVDEALDMLEEMIEKG------IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRP 378

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G         A  L  +M+ +G+ P+ VT+N +++ELC  G+   A ++ 
Sbjct: 379 NVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIF 438

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M   G   NT T++ ++ G CL G +  A  LF  M  MG   TV +Y
Sbjct: 439 HWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTY 488



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 159/337 (47%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I   +     SP   T  +L+ G   + ++ D    +F R+   G  P+  TY+ L
Sbjct: 258 EAELILSQIFQYDLSPDVFTYTSLILGH-CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 316

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C  GRV     +L  ++     P    +T  I  LCA     EA  L  ++K  GC
Sbjct: 317 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 376

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKFGVVCK 250
           +PNV TY+ LI+GL R G   VA+ L+ +M                      G+F    K
Sbjct: 377 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 436

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                       NT TY  II GLC  G ++KA  LF +M      P VVTYN+LI+G+ 
Sbjct: 437 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 496

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              + N A  LL  M + G +PD  T+N ++    K GK++ AS   + M+  G+NPN  
Sbjct: 497 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 556

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++TL+DG    G+V+ A  L   ME MGC   V SY
Sbjct: 557 SYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESY 593



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/363 (30%), Positives = 170/363 (46%), Gaps = 64/363 (17%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  R   P + ++  L   L++    +  + L+ ++   GL P+  TYN LIN  C  GR
Sbjct: 371 MKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGR 430

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
            S    +   +       +   +  +IKGLC    I +A  LF K+   G  P V+TY+T
Sbjct: 431 FSTALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNT 490

Query: 218 LINGLCRTGHTIVALNL---------------FEEMANGNGKFG------------VVC- 249
           LING    G+   A  L               + E+ +G  K+G            V C 
Sbjct: 491 LINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECG 550

Query: 250 -KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             PN V+YTT+IDG  K+G VD A  L  +M++   NP+V +YN++I+G    N ++EA 
Sbjct: 551 LNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAE 610

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKN-------------------------------- 336
            +  +M +QG+ P+V+T+  ++D LC+N                                
Sbjct: 611 KICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL 670

Query: 337 ---GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
              GK DEA  LL+ M  +G+ P+  TF++L+DGF + GR++HA  L   M  +GCK   
Sbjct: 671 CQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNY 730

Query: 394 FSY 396
            +Y
Sbjct: 731 RTY 733



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 103/318 (32%), Positives = 164/318 (51%), Gaps = 21/318 (6%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GDI      +A  +F+ ML M P P  +T   L+ G L K  + +    L   +   G  
Sbjct: 464 GDI-----EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCE 517

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TYN L++ F K G++         ++     P+ V++T+LI G   + ++  A +L
Sbjct: 518 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSL 577

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +++  GC PNV +Y+ +INGL +      A  + ++MA      G++  PN +TYTT+
Sbjct: 578 LERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMAEQ----GLL--PNVITYTTL 631

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLC+ G    A ++F  M+ +   P++ TY+SLI+G C     +EA  LL EM  +G+
Sbjct: 632 IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGL 691

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD VTF  ++D     G++D A  LL  M+  G  PN  T+S L+ G          KE
Sbjct: 692 APDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGL--------QKE 743

Query: 380 LFVSMESMGCKH-TVFSY 396
             +  E +  +H  V+S+
Sbjct: 744 CLLLEEKVAVQHEAVYSF 761



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 182/408 (44%), Gaps = 32/408 (7%)

Query: 4   VSSTCSFHFTSISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDR 63
           + S C  H  + S      NFSS  PH     +  +  EP     +       R+  K  
Sbjct: 47  LKSPCLVHLQNHSSVLGFLNFSSK-PHISSHFAVPASREPFQAIVSRVCAILSRVQWKGS 105

Query: 64  ASLEQFLKERCKSSGQGDITAITPN-EAFCIFDYMLNMRP-------------------- 102
           + L+Q L  + K+    +I A+  + E+   F Y ++ RP                    
Sbjct: 106 SELKQ-LSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDR 164

Query: 103 --SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
             +P       ++  C    +    V      ++  G    LY+ N L+    K   V  
Sbjct: 165 VFAPADHIRILMIKAC-RNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEG 223

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  ++L S   P  + F +LI  L  + ++ EA  + +++  +   P+V TY++LI 
Sbjct: 224 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 283

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR  +  +A  +F+ M          C PN+VTY+T+I+GLC EG VD+A ++  +M 
Sbjct: 284 GHCRNRNLDLAFGVFDRMVKEG------CDPNSVTYSTLINGLCNEGRVDEALDMLEEMI 337

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K I P V TY   I   C      EA  L+  M  +G +P+V T+  ++  L + GK++
Sbjct: 338 EKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLE 397

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            A  L   M+  G+ PNT T++ L++  C+ GR + A ++F  ME  G
Sbjct: 398 VAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 445



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 139/300 (46%), Gaps = 18/300 (6%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L +         +F  +      P+LYTY+ LI   C+ G+     ++
Sbjct: 623 PNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL-- 222
           L  + R    PD V FTSLI G     RI  A  L  ++   GCKPN  TYS L+ GL  
Sbjct: 683 LKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQK 742

Query: 223 -CRTGHTIVALNL--------------FEEMANGNGKFGVV-CKPNTVTYTTIIDGLCKE 266
            C      VA+                FE ++N   +   + C+P   TY+T++ GLC++
Sbjct: 743 ECLLLEEKVAVQHEAVYSFSPHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRK 802

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A++L   MK++   PD   Y SL+   C   + + A  +   +  +G Q  +  +
Sbjct: 803 GRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIY 862

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  LCK G+++EA  L + M+ +  N +   ++ L+DG    G ++   +L   MES
Sbjct: 863 RALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMES 922



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 84/299 (28%), Positives = 136/299 (45%), Gaps = 31/299 (10%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF IF  M   +  P   T  +L++G L +    D    L K +   GL PD  T+  LI
Sbjct: 644 AFKIFHDMEKRKCLPNLYTYSSLIYG-LCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 702

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME-------------- 195
           + F  +GR+ H F++L R++     P+   ++ L+KGL  E  ++E              
Sbjct: 703 DGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKGLQKECLLLEEKVAVQHEAVYSFS 762

Query: 196 ----------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
                      + L  ++   GC+P + TYSTL++GLCR G    A  L ++M       
Sbjct: 763 PHEKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERG--- 819

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
              C P+   Y +++   CK   VD A ++F  ++ K     +  Y +LI   C A    
Sbjct: 820 --FC-PDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVE 876

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           EA  L   M+++    D + + V++D L K G++D   +LL +M  +   PN  T+  L
Sbjct: 877 EAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVIL 935



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 125/255 (49%), Gaps = 18/255 (7%)

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           Y +N+  NCF  M         L R++R   F P       +IK    E  I   A    
Sbjct: 146 YKHNM--NCFISM---------LNRLVRDRVFAPADHIRILMIKACRNEEEIRRVADFLN 194

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G   ++ + +TL+  L +      A NL+++M N         +P+ +T+ T+I+
Sbjct: 195 EISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSG------IQPSLLTFNTLIN 248

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            L K+G V +A+ +  Q+   +++PDV TY SLI G C   + + A  +   M+ +G  P
Sbjct: 249 ILSKKGKVREAELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDP 308

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           + VT++ +++ LC  G++DEA  +LE MI +G+ P   T++  +   C       A EL 
Sbjct: 309 NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELV 368

Query: 382 VSMESMGCKHTVFSY 396
             M+  GC+  V +Y
Sbjct: 369 ARMKKRGCRPNVQTY 383



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 46/111 (41%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K    D  L +F  + + G    L  Y  LI   CK G+V     +   +L   +  D +
Sbjct: 836 KNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQVEEAQALFDNMLEKEWNADEI 895

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +T L+ GL  E  +     L   +++    PN+ TY  L   L R G +I
Sbjct: 896 VWTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGKSI 946


>gi|255660822|gb|ACU25580.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 418

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + ++A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+   C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHNFCKGGEIXLAQSVFDSITKWGLRPSVVSFNTLMNGYIKIGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A ALF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSVMQASGVQPDVYTYSVLINGLCKESKMDDANALFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++ +M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYRQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/256 (34%), Positives = 139/256 (54%), Gaps = 6/256 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMNGYIKIGDLDEGFRLKSVMQASGVQPDVYTYSVLINGLCKESKMDDANAL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 229 FDEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYRQMLSQSLLPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 289 KGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI   C      +A  +L EM+  G++P++ T+ +I++E CK G +   S+
Sbjct: 343 RLDDVAYTALISXLCQEGRSVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSK 402

Query: 345 LLELMILRGVNPNTST 360
           LL+ M   G  PN  T
Sbjct: 403 LLKEMQRDGYLPNVVT 418



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 48/117 (41%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++M+   P   ++  L     K    +T     KR+    +  D   Y  LI+  C+ GR
Sbjct: 302 MSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISXLCQEGR 361

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
                 +L  +L     P+   +T +I   C +  +   + L  +++  G  PNV+T
Sbjct: 362 SVDAEKMLREMLSVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDGYLPNVVT 418


>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
          Length = 827

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 171/348 (49%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP L ++N +   L K +  D   +  +++ +  +
Sbjct: 245 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 298

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI  +   G+      V   + R    PD V  + L+  LC   +I EA  
Sbjct: 299 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 358

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGVV---- 248
           +F  +   G  P+V +Y+ ++NG    G  +   +LF+ M  G+G       F V+    
Sbjct: 359 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAY 417

Query: 249 --------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KP+ VTY T+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 418 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 477

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN LI GFC      +A  L+ E+M+ G+  D+V F+ I++ LCK G++ +A  + +L
Sbjct: 478 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 537

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  G++P+   +S LMDG+CL G++  A  +F +M S G +  V  Y
Sbjct: 538 TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 585



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 157/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 56  LRPEEAHDLLDE-LQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRA 114

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  +TY IL++C  +  R        G++LR+    + +    L++G C   R
Sbjct: 115 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKR 174

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +YS L+  LC  G +  A +L   MA G    G VC P
Sbjct: 175 TDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSP 230

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N V Y T+IDG  KEG V+KA +LF +M  + I PD+VTYNS++H  C A   ++A   L
Sbjct: 231 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 290

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++ V P+  T+N ++      G+  EA R+ + M    + P+  T S LM   C  
Sbjct: 291 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 350

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 351 GKIKEARDVFDTMAMKGQNPDVFSY 375



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 160/317 (50%), Gaps = 13/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  ++
Sbjct: 100 PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 159

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              N L+  FC+  R      ++L R       PD  +++ L+K LC + +  +A  L  
Sbjct: 160 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 219

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C PNV+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY ++
Sbjct: 220 MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDLVTYNSV 273

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + P+  TYN+LI+G+     W EA  +  EM    +
Sbjct: 274 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 333

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVVT +++M  LCK GK+ EA  + + M ++G NP+  +++ +++G+   G +    +
Sbjct: 334 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTD 393

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G     +++
Sbjct: 394 LFDLMLGDGIAPDFYTF 410



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 148/309 (47%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y YN 
Sbjct: 424 DKAMIIFNEMRD-HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 482

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G
Sbjct: 483 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 542

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + YS L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 543 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNVVVYCTLVNGYCKIG 596

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  + I P  + Y+ +I G   A     A     EM + G+  D+ T+N
Sbjct: 597 RIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESGIAMDICTYN 656

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  N  T +T++DG   T RV  AK+LF S+   
Sbjct: 657 IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRS 716

Query: 388 GCKHTVFSY 396
                V +Y
Sbjct: 717 RLVPNVVTY 725



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 68/372 (18%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 137 AHRPELALAFFGQLLRTGLRVNIIIANHLLEG-FCEAKRTDEALDILLHRTPELGCVPDV 195

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++Y+IL+   C  G+      +L  +    +  +P+ VA+ ++I G   E  + +A  LF
Sbjct: 196 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 255

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN------------------GN 242
            ++   G  P+++TY+++++ LC+      A     +M N                    
Sbjct: 256 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 315

Query: 243 GKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           G++    +           P+ VT + ++  LCK G + +A+++F  M  K  NPDV +Y
Sbjct: 316 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 375

Query: 292 NSLIHGF---------------------------------CYAN--DWNEANCLLIEMMD 316
           N +++G+                                  YAN    ++A  +  EM D
Sbjct: 376 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD 435

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            GV+PDVVT+  ++  LC+ GKMD+A      MI +GV P+   ++ L+ GFC  G +  
Sbjct: 436 HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLK 495

Query: 377 AKELFVSMESMG 388
           AKEL   + + G
Sbjct: 496 AKELISEIMNNG 507



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL PD   Y++L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 533 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGY 592

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I YS +I+GL + G T+ A   F EM   +G    
Sbjct: 593 CKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTE-SGIAMD 651

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C     TY  ++ GL K    D+A  LF +++  N+  +++T N++I G        EA
Sbjct: 652 IC-----TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 706

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +    + P+VVT+++++  L K G ++EA  +   M   G  PN+
Sbjct: 707 KDLFASISRSRLVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 757



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 71/294 (24%), Positives = 127/294 (43%), Gaps = 44/294 (14%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  IFD  +N+   P  +    L+ G CL      +  L +F  + S G+ P++  Y  
Sbjct: 530 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCL--VGKMEKALRVFDAMVSAGIEPNVVVYCT 587

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM------------- 194
           L+N +CK+GR+  G  +   +L+    P  + ++ +I GL    R +             
Sbjct: 588 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKMKFHEMTESG 647

Query: 195 ----------------------EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                                 EA  LF +L+A   K N+IT +T+I+G+ +T     A 
Sbjct: 648 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAK 707

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +LF  ++           PN VTY+ +I  L KEG V++A+++F  M++    P+    N
Sbjct: 708 DLFASISRSR------LVPNVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLN 761

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            ++      N+   A   L ++ ++    + +T  +++D     G   E  R L
Sbjct: 762 HVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKGTCREQIRFL 815


>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 556

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 163/342 (47%), Gaps = 38/342 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  + D ML  R   P + ++ +L     K   Y   + L   +   G  PD+ TYN+
Sbjct: 169 DNALAVLDDMLR-RGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNV 227

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N  C+ GRV      L  +      P+ V++  ++KGLC   R  +A  L  ++   G
Sbjct: 228 VVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKG 287

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
             PNV+T++ LI+ LCR G    A+ + +++     K+G                     
Sbjct: 288 RPPNVVTFNMLISFLCRRGLVEPAMEILDQIP----KYGCTPNSLSYNPILHAFCKQKKM 343

Query: 249 --------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                         C P+ V+Y T++  LC+ G VD A EL  Q+KDK   P +++YN++
Sbjct: 344 DRAMAFVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 403

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G   A    EA  LL EM+ +G+QPD++T++ I   LC+ G+++EA +    +   G+
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGI 463

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            PNT  ++ ++ G C     + A +LF  M S GC     +Y
Sbjct: 464 RPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTY 505



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/284 (28%), Positives = 147/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L   ++  G  P++ T+N+LI+  C+ G V     +
Sbjct: 255 PNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLVEPAMEI 314

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   TP+++++  ++   C + ++  A A    + + GC P++++Y+TL+  LCR
Sbjct: 315 LDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTLLTALCR 374

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ L  ++ +        C P  ++Y T+IDGL K G  ++A EL  +M  K +
Sbjct: 375 GGEVDAAVELLHQLKDKG------CTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGL 428

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C      EA     ++ D G++P+ V +N I+  LCK      A  
Sbjct: 429 QPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLYNAILLGLCKRRATHSAID 488

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M+  G  PN ST++ L++G    G V  A+E+   + S G
Sbjct: 489 LFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAREMMAELCSRG 532



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 152/342 (44%), Gaps = 35/342 (10%)

Query: 90  AFCIFDYMLNMR------PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
            +C+   + N R      P  P   ++N L   L      D  L++   +   G  PD+ 
Sbjct: 129 GYCVTGQLDNARRLVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVV 188

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY IL+   CK         +L  +      PD V +  ++ G+C E R+ +A      L
Sbjct: 189 TYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSL 248

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV--------------- 248
            ++GC+PN ++Y+ ++ GLC       A  L  EM+       VV               
Sbjct: 249 PSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTFNMLISFLCRRGLV 308

Query: 249 --------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                         C PN+++Y  I+   CK+  +D+A      M      PD+V+YN+L
Sbjct: 309 EPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSSGCYPDIVSYNTL 368

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           +   C   + + A  LL ++ D+G  P ++++N ++D L K GK +EA  LL  M+ +G+
Sbjct: 369 LTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTEEALELLNEMVTKGL 428

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+  T+ST+  G C  GR+  A + F  ++ MG +     Y
Sbjct: 429 QPDIITYSTISSGLCREGRIEEAIKAFCKVQDMGIRPNTVLY 470



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 9/257 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ +YN ++  +C  G++ +   ++  +      PD   + +LI+GLC   R   A A+
Sbjct: 118 PDVMSYNAMVAGYCVTGQLDNARRLVAAMP---MEPDTYTYNTLIRGLCGRGRTDNALAV 174

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              +   GC P+V+TY+ L+   C+      A+ L +EM +        C P+ VTY  +
Sbjct: 175 LDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKG------CAPDIVTYNVV 228

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++G+C+EG VD A E    +      P+ V+YN ++ G C A  W +A  L+ EM  +G 
Sbjct: 229 VNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGR 288

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+VVTFN+++  LC+ G ++ A  +L+ +   G  PN+ +++ ++  FC   +++ A  
Sbjct: 289 PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 380 LFVSMESMGCKHTVFSY 396
               M S GC   + SY
Sbjct: 349 FVELMVSSGCYPDIVSY 365



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 73/251 (29%), Positives = 132/251 (52%), Gaps = 6/251 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +FN+L   L +    +  + +  ++   G  P+  +YN +++ FCK  ++     
Sbjct: 289 PPNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMA 348

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +  ++ S   PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+T+I+GL 
Sbjct: 349 FVELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLT 408

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  AL L  EM           +P+ +TY+TI  GLC+EG +++A + F +++D  
Sbjct: 409 KAGKTEEALELLNEMVTKG------LQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMG 462

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ V YN+++ G C     + A  L   M+  G  P+  T+ ++++ L   G + EA 
Sbjct: 463 IRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEAR 522

Query: 344 RLLELMILRGV 354
            ++  +  RGV
Sbjct: 523 EMMAELCSRGV 533



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/216 (32%), Positives = 111/216 (51%), Gaps = 14/216 (6%)

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            +LIK LCA  R  EA  +        C+P+V++Y+ ++ G C TG    A  L   M  
Sbjct: 94  AALIKKLCASGRTAEARRVLAS-----CEPDVMSYNAMVAGYCVTGQLDNARRLVAAMP- 147

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                    +P+T TY T+I GLC  G  D A  +   M  +   PDVVTY  L+   C 
Sbjct: 148 --------MEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCK 199

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
            + + +A  LL EM D+G  PD+VT+NV+++ +C+ G++D+A   L+ +   G  PNT +
Sbjct: 200 RSGYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVS 259

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ ++ G C   R   A++L   M   G    V ++
Sbjct: 260 YNIVLKGLCTAERWEDAEKLMAEMSRKGRPPNVVTF 295



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 4/146 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N +   L K    +  L L   + + GL PD+ TY+ + +  C+ GR+      
Sbjct: 395 PVLISYNTVIDGLTKAGKTEEALELLNEMVTKGLQPDIITYSTISSGLCREGRIEEAIKA 454

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      P+ V + +++ GLC       A  LFT + + GC PN  TY+ LI GL  
Sbjct: 455 FCKVQDMGIRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAY 514

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCK 250
            G    A  +  E+ +     GVV K
Sbjct: 515 EGLVKEAREMMAELCS----RGVVSK 536



 Score = 40.4 bits (93), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 48/94 (51%), Gaps = 8/94 (8%)

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV-TFNVIMDELCKNGKMDEASRLLELMI 350
           N  +       D  EA   L+E M  G++P        ++ +LC +G+  EA R     +
Sbjct: 60  NDRLRVLVRRGDLEEA-IRLVESM-AGLEPSAAGPCAALIKKLCASGRTAEARR-----V 112

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L    P+  +++ ++ G+C+TG++++A+ L  +M
Sbjct: 113 LASCEPDVMSYNAMVAGYCVTGQLDNARRLVAAM 146


>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 935

 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 159/308 (51%), Gaps = 8/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF ++  +   P   T    + G L K       L +F  L   GL PD++TY+ L
Sbjct: 507 EALSIFRHLHALGVLPDVQTCSAFIHGLL-KNGRVQEALKVFSELKEKGLVPDVFTYSSL 565

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G V   F +   +      P+   + +L+ GLC    I  A  LF  +   G 
Sbjct: 566 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL 625

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+ +TYST+I+G C++ +   A +LF EM +         +P++  Y  ++ G CKEG 
Sbjct: 626 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG------VQPHSFVYNALVHGCCKEGD 679

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KA  LF +M  K      +++N+LI G+C +    EA+ L  EM+ + + PD VT+  
Sbjct: 680 MEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 738

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM+EA+ L + M  R +  +T T+++LM G+   G+ +    LF  M + G
Sbjct: 739 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG 798

Query: 389 CKHTVFSY 396
            K    +Y
Sbjct: 799 VKPDEVTY 806



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L    A     +    L   ++ +G+ PD++ YN +I+C  K G++      
Sbjct: 382 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 441

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I      PDAV F + I G     ++ EAA  F ++   G  PN   Y+ LING  +
Sbjct: 442 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 501

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+ + AL++F  +       GV+  P+  T +  I GL K G V +A ++F ++K+K +
Sbjct: 502 AGNLMEALSIFRHLH----ALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 555

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY+SLI GFC   +  +A  L  EM  +G+ P++  +N ++D LCK+G +  A +
Sbjct: 556 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 615

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  +G+ P++ T+ST++DG+C +  V  A  LF  M S G +   F Y
Sbjct: 616 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVY 667



 Score =  154 bits (389), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +  CL+K    +   +    +   GL PD  T+   I  + K G+++     
Sbjct: 417 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 476

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+   +T LI G      +MEA ++F  L A G  P+V T S  I+GL +
Sbjct: 477 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 536

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL +F E+       G+V  P+  TY+++I G CK+G V+KA EL  +M  K I
Sbjct: 537 NGRVQEALKVFSELKEK----GLV--PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 590

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++  YN+L+ G C + D   A  L   M ++G++PD VT++ ++D  CK+  + EA  
Sbjct: 591 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 650

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M  +GV P++  ++ L+ G C  G +  A  LF  M   G
Sbjct: 651 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 694



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 147/302 (48%), Gaps = 9/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA   F+ M       P   + + L     +    D VL +   + S G+  +L TYN+
Sbjct: 226 NEAKLTFEEM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 284

Query: 148 LINCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK G++     +L G I   C  P++  F  LI+G C E  +  A  L  +++  
Sbjct: 285 LIHGLCKFGKMEKAAEILKGMITLGC-KPNSRTFCLLIEGYCREHNMGRALELLDEMEKR 343

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
              P+ ++Y  +INGLC      +A  L E+M           KPN V Y+T+I G   E
Sbjct: 344 NLVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG------LKPNVVVYSTLIMGYASE 397

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++A+ L   M    + PD+  YN++I     A    EA+  L+E+  +G++PD VTF
Sbjct: 398 GRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTF 457

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
              +    K GKM EA++  + M+  G+ PN   ++ L++G    G +  A  +F  + +
Sbjct: 458 GAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHA 517

Query: 387 MG 388
           +G
Sbjct: 518 LG 519



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++ ++   L + K  +     F+ +  TGL PD    + LI+ F + G +    + 
Sbjct: 207 PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE-VLR 265

Query: 165 LGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++ SC  P + + +  LI GLC   ++ +AA +   +   GCKPN  T+  LI G C
Sbjct: 266 IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 325

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R  +   AL L +EM   N        P+ V+Y  +I+GLC    +  A +L  +M    
Sbjct: 326 REHNMGRALELLDEMEKRN------LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 379

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+VV Y++LI G+       EA  LL  M   GV PD+  +N I+  L K GKM+EAS
Sbjct: 380 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 439

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             L  +  RG+ P+  TF   + G+  TG++  A + F  M   G
Sbjct: 440 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 484



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 137/261 (52%), Gaps = 6/261 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            + +   GL P+ YTY I+    C+  R++   +    + ++   PD  A ++LI G   
Sbjct: 197 LRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMR 256

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E  I E   +   + + G   N+ITY+ LI+GLC+ G    A  + +      G   + C
Sbjct: 257 EGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK------GMITLGC 310

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KPN+ T+  +I+G C+E  + +A EL  +M+ +N+ P  V+Y ++I+G C+  D + AN 
Sbjct: 311 KPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANK 370

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL +M   G++P+VV ++ ++      G+++EA RLL+ M   GV P+   ++ ++    
Sbjct: 371 LLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLS 430

Query: 370 LTGRVNHAKELFVSMESMGCK 390
             G++  A    + ++  G K
Sbjct: 431 KAGKMEEASTYLLEIQGRGLK 451



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 159/315 (50%), Gaps = 16/315 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CKS   GDI       A  +FD M      P  +T   ++ G   K+++     SLF  +
Sbjct: 605 CKS---GDI-----QRARKLFDGMPEKGLEPDSVTYSTMIDG-YCKSENVAEAFSLFHEM 655

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
            S G+ P  + YN L++  CK G +     +   +L+  F    ++F +LI G C   +I
Sbjct: 656 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKI 714

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            EA+ LF ++ A    P+ +TY+T+I+  C+ G    A  LF+EM   N         +T
Sbjct: 715 QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN------LIVDT 768

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTYT+++ G  K G   +   LF +M  K + PD VTY  +I+  C  ++  EA  L  E
Sbjct: 769 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 828

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           ++ +G+       ++++  LCK   + EAS+LL+ M   G+ P+ +  STL+  F   G+
Sbjct: 829 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSFHEAGK 888

Query: 374 VNHAKELFVSMESMG 388
           ++ A  +F  ++S+G
Sbjct: 889 MDEATRVFEGVKSLG 903



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 135/293 (46%), Gaps = 32/293 (10%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG----FV-----VLGRILR---- 170
           D+VL  F+  N  G  P    ++ILI+ + +MG +       FV     +L  ++R    
Sbjct: 142 DSVLFWFR--NYGGSSP--VVFDILIDSYKRMGMLDEAANVFFVAKNDSILISLIRCNSL 197

Query: 171 -----SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
                    P+   +T +  GLC   R+ EA   F +++  G KP+    S LI+G  R 
Sbjct: 198 RSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMRE 257

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           G     L + + M        V C    N +TY  +I GLCK G ++KA E+   M    
Sbjct: 258 GDIDEVLRIKDVM--------VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLG 309

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+  T+  LI G+C  ++   A  LL EM  + + P  V++  +++ LC    +  A+
Sbjct: 310 CKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLAN 369

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LLE M   G+ PN   +STL+ G+   GR+  A+ L   M   G    +F Y
Sbjct: 370 KLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCY 422



 Score = 98.2 bits (243), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 71/231 (30%), Positives = 114/231 (49%), Gaps = 19/231 (8%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            T +I+   + S I+++  LF      G  P  + +  LI+   R G    A N+F    
Sbjct: 127 LTQMIRTPYSSSSILDSV-LFWFRNYGGSSP--VVFDILIDSYKRMGMLDEAANVFFVAK 183

Query: 240 NGN--------------GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           N +              G+ G+V  PNT TYT I  GLC+   +++AK  F +M+   + 
Sbjct: 184 NDSILISLIRCNSLRSMGEKGLV--PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLK 241

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD    ++LI GF    D +E   +   M+  G+  +++T+NV++  LCK GKM++A+ +
Sbjct: 242 PDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEI 301

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ MI  G  PN+ TF  L++G+C    +  A EL   ME      +  SY
Sbjct: 302 LKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 352



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/238 (23%), Positives = 98/238 (41%), Gaps = 33/238 (13%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           SFN L     K+        LF+ + +  + PD  TY  +I+  CK G++    ++   +
Sbjct: 700 SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 759

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                  D V +TSL+ G     +  E  ALF K+ A G KP+ +TY  +I   C+  + 
Sbjct: 760 QERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNL 819

Query: 229 IVALNLFEEMANGN-------------------------------GKFGVVCKPNTVTYT 257
           + A  L +E+                                   G+ G+  KP+    +
Sbjct: 820 VEAFKLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGL--KPSLAACS 877

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           T++    + G +D+A  +F  +K   + PD  T   L++G     D  +A  L+ +++
Sbjct: 878 TLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 935


>gi|357494939|ref|XP_003617758.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519093|gb|AET00717.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 906

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 163/310 (52%), Gaps = 10/310 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I D M   + + P LT++N+L   L K    +  L +   +   GLFP++ T NI
Sbjct: 395 EEALRIHDEM--RQDAAPNLTTYNILIDMLCKAGELEAALKVQDTMKEAGLFPNIMTVNI 452

Query: 148 LINCFCKMGRVSHG-FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +I+  CK  ++     + LG   + C +PD+  F SLI GL    R+ +A +L+ K+   
Sbjct: 453 MIDRLCKAQKLDEACSIFLGLDHKVC-SPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDS 511

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
              PNV+ Y++LI    + G       +++EM +        C P+ +   + +D + K 
Sbjct: 512 DQIPNVVVYTSLIQNFFKCGRKEDGHKIYKEMVHRG------CSPDLMLLNSYMDCVFKA 565

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V+K + LF ++K + + PDV +Y+ LIHG   A    E   L  EM +QG+  DV+ +
Sbjct: 566 GEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAY 625

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK+GK+D+A +LLE M  +G+ P   T+ +++DG     R++ A  LF   +S
Sbjct: 626 NTVIDGFCKSGKVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKS 685

Query: 387 MGCKHTVFSY 396
           +G    V  Y
Sbjct: 686 IGVDLNVVIY 695



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IF   L+ +   P   +F  L   L +    D   SL++++  +   P++  Y  
Sbjct: 464 DEACSIF-LGLDHKVCSPDSRTFCSLIDGLGRRGRVDDAYSLYEKMLDSDQIPNVVVYTS 522

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  F K GR   G  +   ++    +PD +   S +  +     + +  ALF ++KA G
Sbjct: 523 LIQNFFKCGRKEDGHKIYKEMVHRGCSPDLMLLNSYMDCVFKAGEVEKGRALFEEIKAQG 582

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V +YS LI+GL + G +     LF EM        V+       Y T+IDG CK G
Sbjct: 583 LVPDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVL------AYNTVIDGFCKSG 636

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VDKA +L  +MK K + P VVTY S++ G    +  +EA  L  E    GV  +VV ++
Sbjct: 637 KVDKAYQLLEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYS 696

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D   K G++DEA  +LE ++ +G+ PN+ T++ L+D       ++ A+  F +M+++
Sbjct: 697 SLIDGFGKVGRIDEAYLILEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNL 756

Query: 388 GCKHTVFSY 396
            C     +Y
Sbjct: 757 KCSPNAMTY 765



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 154/312 (49%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLL---FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           ++A+ +++ ML+    P  +   +L+   F C  K   +     ++K +   G  PDL  
Sbjct: 499 DDAYSLYEKMLDSDQIPNVVVYTSLIQNFFKCGRKEDGH----KIYKEMVHRGCSPDLML 554

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            N  ++C  K G V  G  +   I      PD  +++ LI GL       E   LF ++K
Sbjct: 555 LNSYMDCVFKAGEVEKGRALFEEIKAQGLVPDVRSYSILIHGLVKAGFSRETYKLFYEMK 614

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G   +V+ Y+T+I+G C++G    A  L EEM           +P  VTY +++DGL 
Sbjct: 615 EQGLHLDVLAYNTVIDGFCKSGKVDKAYQLLEEMKTKG------LQPTVVTYGSVVDGLA 668

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K   +D+A  LF + K   ++ +VV Y+SLI GF      +EA  +L E+M +G+ P+  
Sbjct: 669 KIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNSY 728

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N ++D L K  ++DEA    + M     +PN  T+S +++G C+  + N A   +  M
Sbjct: 729 TWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCMIRKFNKAFVFWQEM 788

Query: 385 ESMGCKHTVFSY 396
           +  G K    +Y
Sbjct: 789 QKQGLKPNNITY 800



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+++L   L K         LF  +   GL  D+  YN +I+ FCK G+V   + +
Sbjct: 585 PDVRSYSILIHGLVKAGFSRETYKLFYEMKEQGLHLDVLAYNTVIDGFCKSGKVDKAYQL 644

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P  V + S++ GL    R+ EA  LF + K+ G   NV+ YS+LI+G  +
Sbjct: 645 LEEMKTKGLQPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGK 704

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  + EE+            PN+ T+  ++D L K   +D+A+  F  MK+   
Sbjct: 705 VGRIDEAYLILEELMQKG------LTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKC 758

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+ +TY+ +I+G C    +N+A     EM  QG++P+ +T+  ++  L K G + EA  
Sbjct: 759 SPNAMTYSIMINGLCMIRKFNKAFVFWQEMQKQGLKPNNITYTTMIAGLAKAGNVMEARG 818

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           L +     G  P+++ ++ +++G     +   A  +F      GC+
Sbjct: 819 LFDRFKASGGVPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCR 864



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 156/325 (48%), Gaps = 31/325 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M   +  P   +++  L G L+     D +L+LF ++   G   +++ +  L
Sbjct: 186 EAFGVIEMMRKFKFRPA-FSAYTTLIGALSAANRPDPMLTLFHQMQEIGYEANVHLFTTL 244

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  F + GR+     +L  +  + FT D V +   I       ++  A   F ++KA G 
Sbjct: 245 VRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGL 304

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEE-----------------MANGN-GKFGVV-- 248
            P+ +TY+TLI  LC+      A+ LFEE                 M  G+ GKF     
Sbjct: 305 VPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYS 364

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C P+ + Y  I+  L ++G V++A  +  +M+ ++  P++ TYN LI   C
Sbjct: 365 LLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEMR-QDAAPNLTTYNILIDMLC 423

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A +   A  +   M + G+ P+++T N+++D LCK  K+DEA  +   +  +  +P++ 
Sbjct: 424 KAGELEAALKVQDTMKEAGLFPNIMTVNIMIDRLCKAQKLDEACSIFLGLDHKVCSPDSR 483

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSM 384
           TF +L+DG    GRV+ A  L+  M
Sbjct: 484 TFCSLIDGLGRRGRVDDAYSLYEKM 508



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/239 (31%), Positives = 122/239 (51%), Gaps = 6/239 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   LAK    D    LF+   S G+  ++  Y+ LI+ F K+GR+   +++
Sbjct: 655 PTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSIGVDLNVVIYSSLIDGFGKVGRIDEAYLI 714

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +++   TP++  +  L+  L     I EA   F  +K   C PN +TYS +INGLC 
Sbjct: 715 LEELMQKGLTPNSYTWNCLLDALVKAEEIDEAQVCFQNMKNLKCSPNAMTYSIMINGLCM 774

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A   ++EM     K G+  KPN +TYTT+I GL K G V +A+ LF + K    
Sbjct: 775 IRKFNKAFVFWQEMQ----KQGL--KPNNITYTTMIAGLAKAGNVMEARGLFDRFKASGG 828

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            PD   YN++I G   AN   +A  +  E   +G + +  T  V++D L K   +++A+
Sbjct: 829 VPDSACYNAMIEGLSSANKAMDAYIVFEETRLKGCRVNSKTCVVLLDALHKADCLEQAA 887



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 152/330 (46%), Gaps = 30/330 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N AF  F ++            +N     +A+T++ D +  + + ++  G     +    
Sbjct: 114 NVAFQYFRWVERKTQQAHCPEVYNAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVE 173

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+  F K  ++   F V+  + +  F P   A+T+LI  L A +R      LF +++  G
Sbjct: 174 LVASFVKSHKLKEAFGVIEMMRKFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQEIG 233

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVV---- 248
            + NV  ++TL+    R G    AL+L +EM + +               GK G V    
Sbjct: 234 YEANVHLFTTLVRVFAREGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAW 293

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ VTYTT+I  LCK   +D+A ELF ++      P V  YN++I G+
Sbjct: 294 KFFHEMKAQGLVPDDVTYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGY 353

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             A  ++EA  LL     +G  P V+ +N I+  L + GK++EA R+ + M  +   PN 
Sbjct: 354 GSAGKFDEAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRIHDEM-RQDAAPNL 412

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +T++ L+D  C  G +  A ++  +M+  G
Sbjct: 413 TTYNILIDMLCKAGELEAALKVQDTMKEAG 442



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 127/312 (40%), Gaps = 21/312 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK---RLNSTGLFPDLYT 144
            EA  +FD M     S P      ++ G + + K  +     F+   R       P++Y 
Sbjct: 88  EEALNVFDEM-----SQP-----EVIVGVMKRLKDVNVAFQYFRWVERKTQQAHCPEVY- 136

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            N  +    +   + +   +L  +  + F         L+       ++ EA  +   ++
Sbjct: 137 -NAFLMVMARTRNLDYLEQILEEMSVAGFGLSNHVSVELVASFVKSHKLKEAFGVIEMMR 195

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
            F  +P    Y+TLI  L         L LF +M        +  + N   +TT++    
Sbjct: 196 KFKFRPAFSAYTTLIGALSAANRPDPMLTLFHQMQE------IGYEANVHLFTTLVRVFA 249

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           +EG +D A  L  +MK  +   D+V YN  I  F      + A     EM  QG+ PD V
Sbjct: 250 REGRIDAALSLLDEMKSNSFTADLVLYNVCIDCFGKVGKVDMAWKFFHEMKAQGLVPDDV 309

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+  ++  LCK  ++DEA  L E + L    P    ++T++ G+   G+ + A  L    
Sbjct: 310 TYTTLIGVLCKARRLDEAVELFEELDLNRSVPCVYAYNTMIMGYGSAGKFDEAYSLLERQ 369

Query: 385 ESMGCKHTVFSY 396
           +  GC  +V +Y
Sbjct: 370 KRKGCIPSVIAY 381


>gi|302815817|ref|XP_002989589.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
 gi|300142767|gb|EFJ09465.1| hypothetical protein SELMODRAFT_21981 [Selaginella moellendorffii]
          Length = 368

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/349 (28%), Positives = 167/349 (47%), Gaps = 41/349 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +++ M      P  + ++N +  C++K    +    + K +  +   PD + Y  
Sbjct: 15  DEALRLYELMRG-NNVPADIFTYNNMIECISKLGMVEQAEKVLKTMEESDCKPDKFIYTR 73

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN FCK+G   +  V+LGR+  + + PDAV F  +I GLC  S+  EA  +       G
Sbjct: 74  VINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLCKTSKFDEALVVLKVSIEAG 133

Query: 208 CKPNVIT-----------------------------------YSTLINGLCRTGHTIVAL 232
           C+P+ +T                                   YS L+  LC+TG    A 
Sbjct: 134 CEPDEVTYFSIVDPLCNMEDWESALRVLELAQERKCPATNLLYSRLMKCLCKTGKVEAAC 193

Query: 233 NLFEEMANGNGKF-----GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
            L E++ NG+        G  CKP+ V Y+ +ID LC  G  D+   +   M+++ + PD
Sbjct: 194 QLLEDLTNGSRGSEQLLGGDGCKPDVVMYSIVIDALCAMGMTDEGFVVVKAMEERGVKPD 253

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            V Y   ++ FC +   ++A  LL  M++ G  PDV+++N ++  LC  G+ +EA RL +
Sbjct: 254 AVVYTIFLYAFCRSARLDDACRLLEIMVEAGCYPDVISYNTLLFALCSAGQEEEACRLFQ 313

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +M+  G+ PN  T++ L+   C T ++  A+ LF  M+   C   + +Y
Sbjct: 314 VMVETGIEPNVFTYTQLIRALCSTKKLEGARHLFNFMKLSKCVPDMETY 362



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/202 (31%), Positives = 99/202 (49%), Gaps = 6/202 (2%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           +  LI+GLC   RI EA  L+  ++      ++ TY+ +I  + + G    A  + + M 
Sbjct: 1   YNCLIEGLCKGDRIDEALRLYELMRGNNVPADIFTYNNMIECISKLGMVEQAEKVLKTME 60

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
             +      CKP+   YT +I+G CK G    A  L  +MK+    PD V ++ +I G C
Sbjct: 61  ESD------CKPDKFIYTRVINGFCKLGNFKNAVVLLGRMKEAGYAPDAVVFDCIIGGLC 114

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
             + ++EA  +L   ++ G +PD VT+  I+D LC     + A R+LEL   R       
Sbjct: 115 KTSKFDEALVVLKVSIEAGCEPDEVTYFSIVDPLCNMEDWESALRVLELAQERKCPATNL 174

Query: 360 TFSTLMDGFCLTGRVNHAKELF 381
            +S LM   C TG+V  A +L 
Sbjct: 175 LYSRLMKCLCKTGKVEAACQLL 196


>gi|255540069|ref|XP_002511099.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550214|gb|EEF51701.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1151

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++++   L +    D  L L + + + GL PD Y Y  LI+ FC+  R + G  +
Sbjct: 265 PNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFCRQKRSTEGKSM 324

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD VA+T+LI G   +S I  A  +  ++ A   K N  TY  LI+GLC+
Sbjct: 325 LDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTFTYYALIHGLCK 384

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +LF EM       G+  KP+  TY  +I+G  K   ++KA EL +++K +N+
Sbjct: 385 IGDLEKAEDLFSEMT----MMGI--KPDIQTYNCLIEGYYKVQNMEKAYELLIEIKKENL 438

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +     ++++G C+  D   AN L  EM+  G++P++V +  I+  L K G+ +EA +
Sbjct: 439 TANAYMCGAIVNGLCHCGDLTRANELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIK 498

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L +M  +G++P+   ++T++ GFC  G++   K   V M + G K  V++Y
Sbjct: 499 ILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSYLVEMIAKGLKPNVYTY 550



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 136/269 (50%), Gaps = 6/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
            LF+ + S GL P++  Y  ++    K GR      +LG +     +PD   + ++I G 
Sbjct: 463 ELFQEMISWGLKPNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGF 522

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   ++ E  +   ++ A G KPNV TY   I+G CR G    A   F EM +     G+
Sbjct: 523 CKAGKMEEGKSYLVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDS----GI 578

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              PN V  T +IDG CK+G   KA   F  M D+ + PDV T++ LIHG        EA
Sbjct: 579 A--PNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLSKNGKLQEA 636

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +  E++D+G+ PDV T+  ++  LCK G +  A  L + M  +G+NPN  T++ L++G
Sbjct: 637 MGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALING 696

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  G +  A+ELF  +   G      +Y
Sbjct: 697 LCKLGEIAKARELFDGIPEKGLARNSVTY 725



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/303 (31%), Positives = 155/303 (51%), Gaps = 8/303 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  ML+   +P  +   +L+ G   K  +     + F+ +   G+ PD+ T+++LI+   
Sbjct: 570 FIEMLDSGIAPNDVICTDLIDG-YCKDGNTTKAFAKFRCMLDQGVLPDVQTHSVLIHGLS 628

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K G++     V   +L     PD   +TSLI  LC E  +  A  L   +   G  PN++
Sbjct: 629 KNGKLQEAMGVFSELLDKGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIV 688

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY+ LINGLC+ G    A  LF+    G  + G+    N+VTY+TII G CK   + +A 
Sbjct: 689 TYNALINGLCKLGEIAKARELFD----GIPEKGLA--RNSVTYSTIIAGYCKSANLTEAF 742

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +LF  MK   + PD   Y +LI G C A +  +A  L + M+++G+      FN ++D  
Sbjct: 743 QLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGI-ASTPAFNALIDGF 801

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K GK+ EA +L+E M+   + PN  T++ L++  C  G +  A++LF+ M+       V
Sbjct: 802 FKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNV 861

Query: 394 FSY 396
            +Y
Sbjct: 862 LTY 864



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  +   L K   ++  + +   +   GL PD++ YN +I  FCK G++  G   
Sbjct: 475 PNIVIYTTIVKGLVKEGRFEEAIKILGVMKDQGLSPDVFCYNTVIIGFCKAGKMEEGKSY 534

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+   + + I G C    +  A   F ++   G  PN +  + LI+G C+
Sbjct: 535 LVEMIAKGLKPNVYTYGAFIHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCK 594

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+T  A   F  M +     GV+  P+  T++ +I GL K G + +A  +F ++ DK +
Sbjct: 595 DGNTTKAFAKFRCMLDQ----GVL--PDVQTHSVLIHGLSKNGKLQEAMGVFSELLDKGL 648

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY SLI   C   D   A  L  +M  +G+ P++VT+N +++ LCK G++ +A  
Sbjct: 649 VPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARE 708

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + +  +G+  N+ T+ST++ G+C +  +  A +LF  M+ +G     F Y
Sbjct: 709 LFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVY 760



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 165/331 (49%), Gaps = 29/331 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F  +L+ +   P + ++  L   L K         L   +   G+ P++ TYN 
Sbjct: 634 QEAMGVFSELLD-KGLVPDVFTYTSLISNLCKEGDLKAAFELHDDMCKKGINPNIVTYNA 692

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK+G ++    +   I       ++V ++++I G C  + + EA  LF  +K  G
Sbjct: 693 LINGLCKLGEIAKARELFDGIPEKGLARNSVTYSTIIAGYCKSANLTEAFQLFHGMKLVG 752

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLF----EE----------MANGNGKFGVVCK--- 250
             P+   Y  LI+G C+ G+T  AL+LF    EE          + +G  K G + +   
Sbjct: 753 VPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEGIASTPAFNALIDGFFKLGKLIEAYQ 812

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      PN VTYT +I+  C  G + +A++LF++M+ +N+ P+V+TY SL+HG+ 
Sbjct: 813 LVEDMVDNHITPNHVTYTILIEYHCTVGNIKEAEQLFMEMQKRNVMPNVLTYTSLLHGYN 872

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                +E   L  EM+ +G++PD + ++V++D   K G   +A +L++ M+  GVN   +
Sbjct: 873 RIGRRSEMFSLFDEMVARGIKPDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKN 932

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            ++ L+D  C    ++   ++   +E  G K
Sbjct: 933 LYTILIDALCKHNNLSEVLKVLDEVEKQGSK 963



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 150/304 (49%), Gaps = 7/304 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I   M +   SP       ++ G   K    +   S    + + GL P++YTY   
Sbjct: 495 EAIKILGVMKDQGLSPDVFCYNTVIIG-FCKAGKMEEGKSYLVEMIAKGLKPNVYTYGAF 553

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +C+ G +         +L S   P+ V  T LI G C +    +A A F  +   G 
Sbjct: 554 IHGYCRAGEMQAAERSFIEMLDSGIAPNDVICTDLIDGYCKDGNTTKAFAKFRCMLDQGV 613

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V T+S LI+GL + G    A+ +F E+ +     G+V  P+  TYT++I  LCKEG 
Sbjct: 614 LPDVQTHSVLIHGLSKNGKLQEAMGVFSELLDK----GLV--PDVFTYTSLISNLCKEGD 667

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A EL   M  K INP++VTYN+LI+G C   +  +A  L   + ++G+  + VT++ 
Sbjct: 668 LKAAFELHDDMCKKGINPNIVTYNALINGLCKLGEIAKARELFDGIPEKGLARNSVTYST 727

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+   CK+  + EA +L   M L GV P++  +  L+DG C  G    A  LF+ M   G
Sbjct: 728 IIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLGMVEEG 787

Query: 389 CKHT 392
              T
Sbjct: 788 IAST 791



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 81/277 (29%), Positives = 129/277 (46%), Gaps = 7/277 (2%)

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
            K  D+++  +K +N +     +  + ILI+ + K G ++    V      + F      
Sbjct: 141 VKILDSIIKCYKEINGSSSSSSVVVFEILIDIYRKKGFLNEAVSVFLGAKTNEFIVGLAC 200

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
             SL K L   +R+     ++  +      P+V TY+ LIN  CR G      ++  +M 
Sbjct: 201 CNSLSKDLLKGNRVELFWKVYKGMLG-AIVPDVYTYTNLINAYCRVGKVEEGKHVLFDME 259

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C PN VTY+ +I GLC+ G VD+A EL   M +K + PD   Y +LI GFC
Sbjct: 260 EKG------CIPNLVTYSVVIAGLCRAGDVDEALELKRSMANKGLLPDNYIYATLIDGFC 313

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 E   +L EM   G++PD V +  +++   K   +  A ++ E M  R +  NT 
Sbjct: 314 RQKRSTEGKSMLDEMYTMGLKPDHVAYTALINGFVKQSDIGGAFQVKEEMFARKIKLNTF 373

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+  L+ G C  G +  A++LF  M  MG K  + +Y
Sbjct: 374 TYYALIHGLCKIGDLEKAEDLFSEMTMMGIKPDIQTY 410



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 128/279 (45%), Gaps = 11/279 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF-VVLG 166
            +++ +     K+ +      LF  +   G+ PD + Y  LI+  CK G       + LG
Sbjct: 723 VTYSTIIAGYCKSANLTEAFQLFHGMKLVGVPPDSFVYCALIDGCCKAGNTEKALSLFLG 782

Query: 167 RILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
            +      TP   AF +LI G     +++EA  L   +      PN +TY+ LI   C  
Sbjct: 783 MVEEGIASTP---AFNALIDGFFKLGKLIEAYQLVEDMVDNHITPNHVTYTILIEYHCTV 839

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G+   A  LF EM   N        PN +TYT+++ G  + G   +   LF +M  + I 
Sbjct: 840 GNIKEAEQLFMEMQKRN------VMPNVLTYTSLLHGYNRIGRRSEMFSLFDEMVARGIK 893

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD + ++ ++       +W +A  L+ +M+ +GV      + +++D LCK+  + E  ++
Sbjct: 894 PDDLAWSVMVDAHLKEGNWIKALKLVDDMLSEGVNVCKNLYTILIDALCKHNNLSEVLKV 953

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L+ +  +G   + +T  TL+  F   GR + A  +  SM
Sbjct: 954 LDEVEKQGSKLSLATCGTLVCCFHRAGRTDEALRVLESM 992


>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
           [Vitis vinifera]
 gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
          Length = 878

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/340 (29%), Positives = 159/340 (46%), Gaps = 34/340 (10%)

Query: 90  AFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           AF  F    +  P+ PPP+  +N++     +    D+   L+K +   G+ P+ YT N+L
Sbjct: 98  AFSQFQSFRSQVPANPPPVYLYNMVLESSLREDKVDSFSWLYKDMVVAGVSPETYTLNLL 157

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C  GR      V  ++      P+  +F  L++G C     M A  L   + +FG 
Sbjct: 158 IAGLCDSGRFEDAREVFDKMGVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGV 217

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVC---------- 249
           +PN + Y+TLI+  CR G    A  L E M            N +   +C          
Sbjct: 218 QPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASR 277

Query: 250 --------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
                         +PN  T+  +++G CKEG +++AK L   MK      ++ +YN  +
Sbjct: 278 IFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWL 337

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            G        EA   L EM+D+G++P++ +FN +MD LCKNG + +A  ++ LMI  G+ 
Sbjct: 338 LGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIG 397

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           P+T T+STL+ G C TG+V  A  +   M   GC    ++
Sbjct: 398 PDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYT 437



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 159/329 (48%), Gaps = 34/329 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M  ++   P   SF +L     +       L L   + S G+ P+   YN L
Sbjct: 169 DAREVFDKM-GVKGCRPNEFSFGILVRGYCRAGLSMRALELLDGMGSFGVQPNKVIYNTL 227

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK---A 205
           I+ FC+ GR      ++ R+      PD V F S I  LC+  +I+EA+ +F  ++    
Sbjct: 228 ISSFCREGRNEEAERLVERMREDGLFPDVVTFNSRISALCSAGKILEASRIFRDMQIDEE 287

Query: 206 FGC-KPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGN---------GKFGVV------ 248
            G  +PN+ T++ ++ G C+ G    A  L E M  NGN            G+V      
Sbjct: 288 LGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKRNGNLMELESYNIWLLGLVRNGKLL 347

Query: 249 -------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
                         +PN  ++ T++DGLCK G +  A+ +   M    I PD VTY++L+
Sbjct: 348 EAQLALKEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIMGLMISSGIGPDTVTYSTLL 407

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           HG C      +AN +L EMM +G  P+  T N+++  L K G++ EA +LL+ M  R  +
Sbjct: 408 HGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFEAEKLLQKMNERSYD 467

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +  T + ++DG C +G+++ A E+   M
Sbjct: 468 LDNVTCNIVIDGLCKSGKLDEAVEIVEGM 496



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 182/378 (48%), Gaps = 90/378 (23%)

Query: 107 LTSFNL-LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           L S+N+ L G +   K  +  L+L K +   G+ P++Y++N +++  CK G +S   +++
Sbjct: 330 LESYNIWLLGLVRNGKLLEAQLAL-KEMVDKGIEPNIYSFNTVMDGLCKNGLISDARMIM 388

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV------------- 212
           G ++ S   PD V +++L+ G C+  ++++A  +  ++   GC PN              
Sbjct: 389 GLMISSGIGPDTVTYSTLLHGCCSTGKVLKANNILHEMMRRGCSPNTYTCNILLHSLWKE 448

Query: 213 ----------------------ITYSTLINGLCRTGHTIVALNLFEEM--------AN-G 241
                                 +T + +I+GLC++G    A+ + E M         N G
Sbjct: 449 GRIFEAEKLLQKMNERSYDLDNVTCNIVIDGLCKSGKLDEAVEIVEGMWIHGSAALGNLG 508

Query: 242 NGKFGVV--------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           N   G+V        C P+ +TY+ II+GLCK G +D+A++ F++M  K+++PD + Y++
Sbjct: 509 NSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDT 568

Query: 294 LIHGFC----------YANDWNEANC-------------------------LLIEMMDQG 318
            IH FC             D  +  C                         LL +M ++G
Sbjct: 569 FIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKG 628

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + P++ T+N ++  LC+ G++ +A+ LL+ M+ +G++PN S+F  L+  FC        K
Sbjct: 629 ITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKGISPNISSFRLLIKAFCKASDFGVVK 688

Query: 379 ELF-VSMESMGCKHTVFS 395
           E+F +++   G K  ++S
Sbjct: 689 EVFEIALSICGHKEALYS 706



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 134/306 (43%), Gaps = 7/306 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N    + D   N +   P L +++++   L K    D     F  +    L PD   Y+ 
Sbjct: 509 NSFIGLVDSSSNGKKCLPDLITYSIIINGLCKAGRLDEARKKFIEMVGKSLHPDSIIYDT 568

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+ FCK G++S  F VL  + +         + SLI GL ++++I E   L   +K  G
Sbjct: 569 FIHSFCKHGKISSAFRVLKDMEKRGCNKSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKG 628

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+ TY+ +I+ LC  G    A +L +EM            PN  ++  +I   CK  
Sbjct: 629 ITPNICTYNNMISCLCEGGRIKDATSLLDEMLQKG------ISPNISSFRLLIKAFCKAS 682

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
                KE+F ++           Y+ + +      + +EA  L    +D+        +N
Sbjct: 683 DFGVVKEVF-EIALSICGHKEALYSLMFNELLIGGEVSEAKELFDAALDRCFDLGNFQYN 741

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++++LCK+  ++ AS +L  MI +G   + ++F  ++DG    G+ + A EL   M  M
Sbjct: 742 DLIEKLCKDEMLENASDILHKMIDKGYRFDPASFMPVIDGLGKRGKKHDADELAERMMDM 801

Query: 388 GCKHTV 393
             +  V
Sbjct: 802 ASEGMV 807


>gi|125540047|gb|EAY86442.1| hypothetical protein OsI_07823 [Oryza sativa Indica Group]
          Length = 703

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 151/304 (49%), Gaps = 11/304 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M  +R     + S+  L     +T   D  + LF  ++     PD++ Y  L+   
Sbjct: 68  LFDKM-PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMDQ----PDMHMYAALVKGL 122

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR   G ++L R+    + P   A+ +++   C E +  EA  +  ++   G  P V
Sbjct: 123 CKAGRGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCV 182

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +T + +IN  C+ G    AL + E M          CKPN  TY  ++ G C EG V KA
Sbjct: 183 VTCTAVINAYCKEGRMSDALRVLELMKLRG------CKPNVWTYNALVQGFCNEGKVHKA 236

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L  +M+   +NPD VTYN LI G C       A  LL  M   G+  D  T+N +++ 
Sbjct: 237 MALLNKMRVCGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINA 296

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK+G+ D+A  L + +  RG+ PN  TF++L++G C +G+V+ A +    M S GC   
Sbjct: 297 LCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPD 356

Query: 393 VFSY 396
            ++Y
Sbjct: 357 TYTY 360



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 133/278 (47%), Gaps = 6/278 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K       L + + +   G  P+++TYN L+  FC  G+V     +L ++      PDAV
Sbjct: 194 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGVNPDAV 253

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            +  LI+G C +  I  A  L   ++  G   +  TY+ LIN LC+ G T  A +LF+ +
Sbjct: 254 TYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDSL 313

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      KPN VT+ ++I+GLCK G VD A +   +M      PD  TY+S I   
Sbjct: 314 ETRG------IKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSSFIEHL 367

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C      E    + EM+ + V+P  V + +++ +L K       +R    M+  G NP+ 
Sbjct: 368 CKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPDV 427

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++T M  +C+ GR+N A+ + + M   G      +Y
Sbjct: 428 VTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAY 465



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 146/317 (46%), Gaps = 33/317 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N +   L +     + L     +  +G  PD YT+N LI  +C+  +V     +  ++
Sbjct: 13  TYNAVIRSLCRRADLASALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKM 72

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
               F  D V++ +LI+G C   RI EA  LF ++     +P++  Y+ L+ GLC+ G  
Sbjct: 73  PLRGFAQDVVSYAALIEGFCETGRIDEAVELFGEMD----QPDMHMYAALVKGLCKAGRG 128

Query: 229 IVALNLFEEMANGNGK-----------------------------FGVVCKPNTVTYTTI 259
              L +   M     +                             F     P  VT T +
Sbjct: 129 EEGLLMLRRMKELGWRPSTRAYAAVVDFRCWERKAKEAEEMLQEMFEKGLAPCVVTCTAV 188

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+  CKEG +  A  +   MK +   P+V TYN+L+ GFC     ++A  LL +M   GV
Sbjct: 189 INAYCKEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMALLNKMRVCGV 248

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PD VT+N+++   C +G ++ A RLL LM   G+  +  T++ L++  C  GR + A  
Sbjct: 249 NPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACS 308

Query: 380 LFVSMESMGCKHTVFSY 396
           LF S+E+ G K    ++
Sbjct: 309 LFDSLETRGIKPNAVTF 325



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 158/346 (45%), Gaps = 20/346 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +   F++  CK  G          E       ML  +   P   ++ ++   L K +
Sbjct: 356 DTYTYSSFIEHLCKMKGS--------QEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKER 406

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
           +Y  V   +  + S+G  PD+ TY   +  +C  GR++    VL  + ++  T D +A+ 
Sbjct: 407 NYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 466

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE----- 236
           +L+ G  +  +   A ++  ++ +    PN  TY  L+  L R       L L       
Sbjct: 467 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 526

Query: 237 --EMANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
             E+ +  G F V+ K    PN+ TY++I++G  ++G  ++A  L   MK+ +I+ +   
Sbjct: 527 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 586

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y +L+  FC +  + +A  L+  M+  G  P ++++  ++  L   G+ D+A  +     
Sbjct: 587 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPHLMSYQHLLSGLICEGQTDKAKEIFMNSR 646

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  +P+   +  ++DG    G  + ++E+ + +E M C+ +  +Y
Sbjct: 647 WKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 692



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 24/326 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD  L  R   P   +FN L   L K+   D      +++ S G  PD YTY+ 
Sbjct: 304 DQACSLFDS-LETRGIKPNAVTFNSLINGLCKSGKVDIAWKFLEKMVSAGCTPDTYTYSS 362

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   CKM     G   +G +L+    P  V +T +I  L  E      A  + ++ + G
Sbjct: 363 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 422

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+T +   C  G    A N+  EM+    K GV    +T+ Y T++DG    G
Sbjct: 423 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMS----KNGVTV--DTMAYNTLMDGHASIG 476

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH-----------------GFCYANDWNEANCL 310
             D A  +  QM      P+  TY  L+                  G   A +  +   L
Sbjct: 477 QTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGL 536

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
              M      P+  T++ I++   ++G+ +EA+ L+ LM    ++ N   ++ L+  FC 
Sbjct: 537 FDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCK 596

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
           + R   A  L  SM   G    + SY
Sbjct: 597 SKRYLDAWVLVCSMIQHGFIPHLMSY 622



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 110/242 (45%), Gaps = 23/242 (9%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV---------- 158
           ++N L    A     D  +S+ K++ S    P+ +TY IL+    +M  V          
Sbjct: 464 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 523

Query: 159 -------SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
                  +  F +   + ++ F P++  ++S+++G   + R  EA +L + +K      N
Sbjct: 524 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 583

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
              Y+ L+   C++   + A  L   M     + G +  P+ ++Y  ++ GL  EG  DK
Sbjct: 584 EDIYTALVTCFCKSKRYLDAWVLVCSMI----QHGFI--PHLMSYQHLLSGLICEGQTDK 637

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           AKE+F+  + K+ +PD + +  +I G       + +  ++I +     +P   T+ ++ +
Sbjct: 638 AKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 697

Query: 332 EL 333
           EL
Sbjct: 698 EL 699


>gi|302763353|ref|XP_002965098.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
 gi|300167331|gb|EFJ33936.1| hypothetical protein SELMODRAFT_83321 [Selaginella moellendorffii]
          Length = 600

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/352 (30%), Positives = 162/352 (46%), Gaps = 60/352 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR------- 157
           P + S+N +   LA     D     F  +   G  PD+  +  LI+ FCK G+       
Sbjct: 5   PTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHKL 64

Query: 158 -----------------VSHGFVVLGRILRSCF---TP----DAVAFTSLIKGLCAESRI 193
                            V HG+   G +    F   TP    D +++T++IKGL    RI
Sbjct: 65  LNQALKRFRPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLADSKRI 124

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN-----GKFGVV 248
            EA  LF +LK  GC PNV+ Y+ +I+GL + G     L  FEEM+  +       + VV
Sbjct: 125 DEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSSCVPTRTTYTVV 184

Query: 249 ------------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                                   C P+T+TYTT+IDG  K   +D+A++L   M  K  
Sbjct: 185 IDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLLDVMLTKGP 244

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  VTY S++HGFC  +  NEA  ++ +M ++G +P +  F  ++      G+ +EA +
Sbjct: 245 EPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEEAYQ 304

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L  M  RG  P+   +++L+D    TGRV  A+ +F SM   GC     +Y
Sbjct: 305 VLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTY 356



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 157/339 (46%), Gaps = 31/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D ML   P P  +T  +++ G   K    +    +  ++   G  P L+ +  
Sbjct: 230 DEARKLLDVMLTKGPEPTAVTYGSIVHG-FCKLDMINEAKEVIAQMRERGCEPGLFIFTS 288

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +   GR    + VL  +      PD + +TSLI  L +  R+ EA  +F  +   G
Sbjct: 289 LLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------------NGKF 245
           C P+ +TY T+I    + G+   A  + E MA                        +  F
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 246 GVV-------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPDVVTYNSLIHG 297
           GV         KPN VT+  ++ GL K+G  D+A  LF +M +K  + P +V+Y  LI G
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSYTILIDG 468

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
              A   +EA     EM+D+G+ P+  T+  ++  L K G++ EA +L+E M+  GVNP+
Sbjct: 469 LGKAGRVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPD 528

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +S L+ G   +  V+ A ++F  M   GC     +Y
Sbjct: 529 VQAYSALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTY 567



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S+  +   LA +K  D    LF+ L + G  P++  Y  +I+   K GR+  G     
Sbjct: 108 VISYTTVIKGLADSKRIDEACELFEELKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFE 167

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +  S   P    +T +I GLC    + +A  +F ++   GC P+ ITY+TLI+G  +  
Sbjct: 168 EMSGSSCVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKAS 227

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  L + M     +      P  VTY +I+ G CK   +++AKE+  QM+++   P
Sbjct: 228 KMDEARKLLDVMLTKGPE------PTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEP 281

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            +  + SL+  +       EA  +L EM  +G  PDV+ +  ++D L   G++ EA  + 
Sbjct: 282 GLFIFTSLLSYYLSKGRAEEAYQVLTEMTARGCAPDVILYTSLIDLLFSTGRVPEARHVF 341

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + MI +G  P+  T+ T++  F   G V  A E+   M   G     F+Y
Sbjct: 342 DSMIEKGCAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAY 391



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA+ +   M   R   P +  +  L   L  T        +F  +   G  PD  TY  
Sbjct: 300 EEAYQVLTEM-TARGCAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKGCAPDALTYGT 358

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  F K+G V     +L  + +S   PD  A+ SL+ G     R+ +A  ++ ++ A G
Sbjct: 359 IIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVASG 418

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KPN +T++ L++GL + G T  A +LF+EM            P  V+YT +IDGL K G
Sbjct: 419 IKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEE-----VPPTLVSYTILIDGLGKAG 473

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A   F +M D+ I P+  TY SLI+    A    EA  L+ +M+  GV PDV  ++
Sbjct: 474 RVSEAFLQFQEMIDRGIIPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYS 533

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
            ++  L  +  +D A  + + M+ RG  PN  T+  L  GF   GR
Sbjct: 534 ALITGLIDSSMVDTAWDVFQEMMKRGCAPNEVTYKVLRRGFRAAGR 579



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 137/293 (46%), Gaps = 41/293 (13%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  P + +YN +I+    + ++   +     ++ +   PD +AFT+LI G C   +    
Sbjct: 2   GCEPTIVSYNTVISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVG 61

Query: 197 AALFTK-LKAFGCKPNVITYSTLINGLCRTG--------------------HTIV----- 230
             L  + LK F  +P+V  Y+++I+G C+ G                    +T V     
Sbjct: 62  HKLLNQALKRF--RPDVFLYTSVIHGYCKAGDLDTGYFRAVTPKASLDVISYTTVIKGLA 119

Query: 231 -------ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  A  LFEE+          C PN V YT +IDGL K G ++   + F +M   +
Sbjct: 120 DSKRIDEACELFEELKTAG------CSPNVVAYTAVIDGLLKAGRIEDGLKNFEEMSGSS 173

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P   TY  +I G C A    +A  +  +M+ +G  PD +T+  ++D   K  KMDEA 
Sbjct: 174 CVPTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEAR 233

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LL++M+ +G  P   T+ +++ GFC    +N AKE+   M   GC+  +F +
Sbjct: 234 KLLDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIF 286



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 140/294 (47%), Gaps = 9/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++ ++   L K +       +F+++   G  PD  TY  LI+ F K  ++     +
Sbjct: 176 PTRTTYTVVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKL 235

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P AV + S++ G C    I EA  +  +++  GC+P +  +++L++    
Sbjct: 236 LDVMLTKGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLS 295

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G    A  +  EM A G       C P+ + YT++ID L   G V +A+ +F  M +K 
Sbjct: 296 KGRAEEAYQVLTEMTARG-------CAPDVILYTSLIDLLFSTGRVPEARHVFDSMIEKG 348

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD +TY ++I  F    +   A  +L  M   GV PD   +N +MD   K  ++D+A 
Sbjct: 349 CAPDALTYGTIIQNFSKIGNVEAAGEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAF 408

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
            + + M+  G+ PN  TF+ LM G    G+ + A  LF  M E      T+ SY
Sbjct: 409 GVYDRMVASGIKPNAVTFNVLMHGLFKDGKTDRAFSLFKEMLEKEEVPPTLVSY 462



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 65/142 (45%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF +F  ML     PP L S+ +L   L K          F+ +   G+ P+ +TY  
Sbjct: 440 DRAFSLFKEMLEKEEVPPTLVSYTILIDGLGKAGRVSEAFLQFQEMIDRGIIPECHTYTS 499

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI    K GR+     ++  +++    PD  A+++LI GL   S +  A  +F ++   G
Sbjct: 500 LIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWDVFQEMMKRG 559

Query: 208 CKPNVITYSTLINGLCRTGHTI 229
           C PN +TY  L  G    G  +
Sbjct: 560 CAPNEVTYKVLRRGFRAAGRAL 581


>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
          Length = 740

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 151/290 (52%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S N L   LAK +  +   +L+K++ ++G+ P L T+N LIN   K G+V    ++L 
Sbjct: 163 LYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILS 222

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I +   +PD   +TSLI G C    +  A  +F ++   GC PN +TYSTLINGLC  G
Sbjct: 223 QIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEG 282

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL++ EEM           +P   TYT  I  LC     ++A EL  +MK +   P
Sbjct: 283 RVDEALDMLEEMIEKG------IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRP 336

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G         A  L  +M+ +G+ P+ VT+N +++ELC  G+   A ++ 
Sbjct: 337 NVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIF 396

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M   G   NT T++ ++ G CL G +  A  LF  M  MG   TV +Y
Sbjct: 397 HWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTY 446



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 109/360 (30%), Positives = 169/360 (46%), Gaps = 64/360 (17%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  L   L++    +  + L+ ++   GL P+  TYN LIN  C  GR S 
Sbjct: 332 RGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFST 391

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +       +   +  +IKGLC    I +A  LF K+   G  P V+TY+TLIN
Sbjct: 392 ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 451

Query: 221 GLCRTGHTIVALNL---------------FEEMANGNGKFG------------VVC--KP 251
           G    G+   A  L               + E+ +G  K+G            V C   P
Sbjct: 452 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 511

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N V+YT +IDG  K+G VD A  L  +M++   NP+V +YN++I+G    N ++EA  + 
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKN----------------------------------- 336
            +M++QG+ P+V+T+  ++D LC+N                                   
Sbjct: 572 DKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK DEA  LL+ M  +G+ P+  TF++L+DGF + GR++HA  L   M  MGCK    +Y
Sbjct: 632 GKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTY 691



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 158/337 (46%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I   +     SP   T  +L+ G   + ++ D    +F R+   G  P+  TY+ L
Sbjct: 216 EAELILSQIFQYDLSPDVFTYTSLILGH-CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C  GRV     +L  ++     P    +T  I  LCA     EA  L  ++K  GC
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKFGVVCK 250
           +PNV TY+ LI+GL R G   VA+ L+ +M                      G+F    K
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 394

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                       NT TY  II GLC  G ++KA  LF +M      P VVTYN+LI+G+ 
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              + N A  LL  M + G +PD  T+N ++    K GK++ AS   + M+  G+NPN  
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++ L+DG    G+V+ A  L   ME MGC   V SY
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 152/289 (52%), Gaps = 12/289 (4%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GDI      +A  +F+ ML M P P  +T   L+ G L K  + +    L   +   G  
Sbjct: 422 GDI-----EKAMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCE 475

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TYN L++ F K G++         ++     P+ V++T+LI G   + ++  A +L
Sbjct: 476 PDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSL 535

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +++  GC PNV +Y+ +INGL +      A  + ++M       G++  PN +TYTT+
Sbjct: 536 LKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ----GLL--PNVITYTTL 589

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLC+ G    A ++F  M+ +   P++ TY+SLI+G C     +EA  LL EM  +G+
Sbjct: 590 IDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEMERKGL 649

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            PD VTF  ++D     G++D A  LL  M+  G  PN  T+S L+ G 
Sbjct: 650 APDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGL 698



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 182/408 (44%), Gaps = 32/408 (7%)

Query: 4   VSSTCSFHFTSISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDR 63
           + S C  H  + S      NFSS  PH     +  +  EP     +       R+  K  
Sbjct: 5   LKSPCLVHLQNHSSVLGFLNFSSK-PHISSHFAVPASREPFQAIVSRVCAILSRVQWKGS 63

Query: 64  ASLEQFLKERCKSSGQGDITAITPN-EAFCIFDYMLNMRP-------------------- 102
           + L+Q L  + K+    +I A+  + E+   F Y ++ RP                    
Sbjct: 64  SELKQ-LSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDR 122

Query: 103 --SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
             +P       ++  C    +    V      ++  G    LY+ N L+    K   V  
Sbjct: 123 VFAPADHIRILMIKAC-RNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEG 181

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  ++L S   P  + F +LI  L  + ++ EA  + +++  +   P+V TY++LI 
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR  +  +A  +F+ M          C PN+VTY+T+I+GLC EG VD+A ++  +M 
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEG------CDPNSVTYSTLINGLCNEGRVDEALDMLEEMI 295

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K I P V TY   I   C      EA  L+  M  +G +P+V T+  ++  L + GK++
Sbjct: 296 EKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLE 355

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            A  L   M+  G+ PNT T++ L++  C+ GR + A ++F  ME  G
Sbjct: 356 VAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 90/202 (44%), Gaps = 30/202 (14%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  M+    +P P+ S+  L    +K    D  LSL KR+   G  P++ +YN +IN   
Sbjct: 501 FQEMVECGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K  R S    +  +++     P+ + +T+LI GLC   R   A  +F  ++   C PN+ 
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 619

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVV---------- 248
           TYS+LI GLC+ G    A  L +EM                +G    G +          
Sbjct: 620 TYSSLIYGLCQEGKADEAEILLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRM 679

Query: 249 ----CKPNTVTYTTIIDGLCKE 266
               CKPN  TY+ ++ GL KE
Sbjct: 680 VDMGCKPNYRTYSVLLKGLQKE 701



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF IF  M   +  P   T  +L++G L +    D    L K +   GL PD  T+  LI
Sbjct: 602 AFKIFHDMEKRKCLPNLYTYSSLIYG-LCQEGKADEAEILLKEMERKGLAPDEVTFTSLI 660

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF--G 207
           + F  +GR+ H F++L R++     P+   ++ L+KGL  E  ++E   +F  +  +  G
Sbjct: 661 DGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLE-EKIFPLVDNYFLG 719

Query: 208 CKP 210
           C P
Sbjct: 720 CNP 722


>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1084

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 154/302 (50%), Gaps = 10/302 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +   SLF+ +   G+ P +YTY ILI+ FCK G +      
Sbjct: 458 PDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGLIQQARKW 517

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L    TP+ V +T+LI       ++  A  LF  +   GCKPNV+TY+ LI+G C+
Sbjct: 518 FDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCK 577

Query: 225 TGHTIVALNLFEEM------ANGNGKFGVV---CK-PNTVTYTTIIDGLCKEGFVDKAKE 274
            G    A  ++  M      ++ +  F +    C+ PN +TY  ++DGLCK   V +A E
Sbjct: 578 AGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAHE 637

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ + Y+++I GFC      +A  +  +M ++G  P++ T++  +D L 
Sbjct: 638 LLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCLF 697

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K+ ++D   ++L  M+     PN   ++ ++DG C  G+ + A +L + ME  GC   V 
Sbjct: 698 KDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNVV 757

Query: 395 SY 396
           +Y
Sbjct: 758 TY 759



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 150/320 (46%), Gaps = 46/320 (14%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD ML+ +   P + ++  L     K K       LF+ +   G  P++ TY  LI+  C
Sbjct: 518 FDEMLH-KGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTYTALIDGHC 576

Query: 154 KMGRVSHGFVVLGRIL----------------RSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           K G++     +  R+                  +C  P+ + + +L+ GLC  +R+ EA 
Sbjct: 577 KAGQIEKACQIYARMRGDIESSDMDKYFKLDHNNCEGPNVITYGALVDGLCKANRVKEAH 636

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN----------------- 240
            L   + A GC+PN I Y  +I+G C+ G    A  +F +M+                  
Sbjct: 637 ELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSFIDCL 696

Query: 241 -GNGKFGVV-----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             + +  +V           C PN V YT ++DGLCK G  D+A +L L+M++K  NP+V
Sbjct: 697 FKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGCNPNV 756

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY ++I GF  +    +   L  +M  +G  P+ +T+ V+++  C NG +DEA +LL+ 
Sbjct: 757 VTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHCCSNGLLDEAYKLLDE 816

Query: 349 MILRGVNPNTSTFSTLMDGF 368
           M       +  +   +++GF
Sbjct: 817 MKQTYWPKHILSHRKIIEGF 836



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/300 (27%), Positives = 148/300 (49%), Gaps = 11/300 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D ML     P  +  ++ +     K         +F +++  G  P+LYTY+  
Sbjct: 634 EAHELLDTMLAHGCEPNQIV-YDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYSSF 692

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+C  K  R+     VL ++L +  TP+ V +T ++ GLC   +  EA  L  K++  GC
Sbjct: 693 IDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKMEEKGC 752

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV+TY+ +I+G  ++G     L LF +M +        C PN +TY  +I+  C  G 
Sbjct: 753 NPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKG------CAPNFITYRVLINHCCSNGL 806

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A +L  +MK       ++++  +I GF  + ++  +  LL E+ +    P    + +
Sbjct: 807 LDEAYKLLDEMKQTYWPKHILSHRKIIEGF--SQEFITSIGLLDELSENESVPVDSLYRI 864

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNP--NTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++D   K G+++ A  LLE +     +   N   +++L++      +V+ A EL+ SM S
Sbjct: 865 LIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLIENLSHASKVDKALELYASMIS 924



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 157/358 (43%), Gaps = 18/358 (5%)

Query: 44  SDPTTTAKLKESLRLT---VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           +D   TA L +   L+   V DR +L  F    CK             EAF + D   + 
Sbjct: 224 ADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGG--------KCREAFDLIDEAEDF 275

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
            P       +N +   L +   ++  + +  R+ S+   P++ TY IL++   + G++  
Sbjct: 276 VPDT---VFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGR 332

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++     P+   F SLI   C       A  LF K+   GC+P  + Y+  I 
Sbjct: 333 CKRILSMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFIG 392

Query: 221 GLCRTGHTIVA--LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
            +C       +  L+L E+  +     GVV   N V  +     LC  G  D+A ++  +
Sbjct: 393 SVCSNEEQPSSDILDLVEKAYSEMLDLGVVL--NKVNVSNFARCLCGAGKFDQAFKIICE 450

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K   PD  TY+ +I   C A+   +A  L  EM   G+ P V T+ +++D  CK G 
Sbjct: 451 MMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTILIDSFCKAGL 510

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +A +  + M+ +G  PN  T++ L+  +    ++  A ELF  M   GCK  V +Y
Sbjct: 511 IQQARKWFDEMLHKGCTPNVVTYTALIHAYLKAKQMPVADELFEMMLLEGCKPNVVTY 568



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 131/333 (39%), Gaps = 49/333 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++N L     +    DT   + + + S     D YT +      CK G+    F +
Sbjct: 209 PSQTTYNALIQVFLRADKLDTAYLVKREMLSYAFVMDRYTLSCFAYSLCKGGKCREAFDL 268

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +       F PD V +  ++ GLC  S   EA  +  ++++  C PNV+TY  L++G  R
Sbjct: 269 IDEA--EDFVPDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLR 326

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G       +   M          C PN   + ++I   CK      A +LF +M     
Sbjct: 327 KGQLGRCKRILSMMITEG------CYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGC 380

Query: 285 NPDVVTYNSLIHG-----------------------------------------FCYAND 303
            P  + YN  I                                            C A  
Sbjct: 381 QPGYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVLNKVNVSNFARCLCGAGK 440

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           +++A  ++ EMM +G  PD  T++ ++  LC   K+++A  L E M   G+ P+  T++ 
Sbjct: 441 FDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLFEEMKRNGIVPSVYTYTI 500

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+D FC  G +  A++ F  M   GC   V +Y
Sbjct: 501 LIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTY 533



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 18/219 (8%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           L++  C       A     +LK FG KP+  TY+ LI    R      A  +  EM +  
Sbjct: 182 LVRKCCRNGWWNMALEELGRLKDFGYKPSQTTYNALIQVFLRADKLDTAYLVKREMLS-- 239

Query: 243 GKFGVVCKPNTVT---YTTIIDGLCKEGF--VDKAKELFLQMKDKNINPDVVTYNSLIHG 297
             +  V    T++   Y+    G C+E F  +D+A++           PD V YN ++ G
Sbjct: 240 --YAFVMDRYTLSCFAYSLCKGGKCREAFDLIDEAEDFV---------PDTVFYNRMVSG 288

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C A+ + EA  +L  M      P+VVT+ +++    + G++    R+L +MI  G  PN
Sbjct: 289 LCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRILSMMITEGCYPN 348

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              F++L+  +C +   ++A +LF  M   GC+     Y
Sbjct: 349 REIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVY 387



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/297 (23%), Positives = 126/297 (42%), Gaps = 20/297 (6%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           ++ R   P L +++    CL K    D VL +  ++      P++  Y  +++  CK+G+
Sbjct: 677 MSERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGK 736

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
               + ++ ++      P+ V +T++I G     +I +   LF  + + GC PN ITY  
Sbjct: 737 TDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRV 796

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE-----GFVDKA 272
           LIN  C  G    A  L +EM             + +++  II+G  +E     G +D+ 
Sbjct: 797 LINHCCSNGLLDEAYKLLDEMKQ------TYWPKHILSHRKIIEGFSQEFITSIGLLDEL 850

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP--DVVTFNVIM 330
            E      ++++  D + Y  LI  +  A     A  LL E+         +   +  ++
Sbjct: 851 SE------NESVPVDSL-YRILIDNYIKAGRLEVALDLLEEISSSPSHAVSNKYLYASLI 903

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           + L    K+D+A  L   MI + V P  S    L+ G     +   A +L  S+  M
Sbjct: 904 ENLSHASKVDKALELYASMISKNVVPELSILVHLIKGLIKVDKWQEALQLSDSICQM 960


>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
          Length = 814

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/348 (30%), Positives = 171/348 (49%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP L ++N +   L K +  D   +  +++ +  +
Sbjct: 232 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 285

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI  +   G+      V   + R    PD V  + L+  LC   +I EA  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 345

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGVV---- 248
           +F  +   G  P+V +Y+ ++NG    G  +   +LF+ M  G+G       F V+    
Sbjct: 346 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAY 404

Query: 249 --------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KP+ VTY T+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN LI GFC      +A  L+ E+M+ G+  D+V F+ I++ LCK G++ +A  + +L
Sbjct: 465 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 524

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  G++P+   +S LMDG+CL G++  A  +F +M S G +  V  Y
Sbjct: 525 TVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVY 572



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 157/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 43  LRPEEAHDLLDE-LQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRA 101

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  +TY IL++C  +  R        G++LR+    + +    L++G C   R
Sbjct: 102 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKR 161

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +YS L+  LC  G +  A +L   MA G    G VC P
Sbjct: 162 TDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSP 217

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N V Y T+IDG  KEG V+KA +LF +M  + I PD+VTYNS++H  C A   ++A   L
Sbjct: 218 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 277

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++ V P+  T+N ++      G+  EA R+ + M    + P+  T S LM   C  
Sbjct: 278 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 338 GKIKEARDVFDTMAMKGQNPDVFSY 362



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 149/309 (48%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y YN 
Sbjct: 411 DKAMIIFNEMRD-HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 469

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + YS L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 530 LHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNVVVYCTLVNGYCKIG 583

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  + I P  + Y+ +I G   A     A     EM + G+  D+ T+N
Sbjct: 584 RIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESGIAMDICTYN 643

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  N  T +T++DG   T RV  AK+LF S+   
Sbjct: 644 IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRS 703

Query: 388 GCKHTVFSY 396
               +V +Y
Sbjct: 704 RLVPSVVTY 712



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 160/317 (50%), Gaps = 13/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  ++
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 146

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              N L+  FC+  R      ++L R       PD  +++ L+K LC + +  +A  L  
Sbjct: 147 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 206

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C PNV+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY ++
Sbjct: 207 MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDLVTYNSV 260

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + P+  TYN+LI+G+     W EA  +  EM    +
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 320

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVVT +++M  LCK GK+ EA  + + M ++G NP+  +++ +++G+   G +    +
Sbjct: 321 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTD 380

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G     +++
Sbjct: 381 LFDLMLGDGIAPDFYTF 397



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 68/372 (18%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 124 AHRPELALAFFGQLLRTGLRVNIIIANHLLEG-FCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++Y+IL+   C  G+      +L  +    +  +P+ VA+ ++I G   E  + +A  LF
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 242

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN------------------GN 242
            ++   G  P+++TY+++++ LC+      A     +M N                    
Sbjct: 243 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 302

Query: 243 GKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           G++    +           P+ VT + ++  LCK G + +A+++F  M  K  NPDV +Y
Sbjct: 303 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 362

Query: 292 NSLIHGF---------------------------------CYAN--DWNEANCLLIEMMD 316
           N +++G+                                  YAN    ++A  +  EM D
Sbjct: 363 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD 422

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            GV+PDVVT+  ++  LC+ GKMD+A      MI +GV P+   ++ L+ GFC  G +  
Sbjct: 423 HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLK 482

Query: 377 AKELFVSMESMG 388
           AKEL   + + G
Sbjct: 483 AKELISEIMNNG 494



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL PD   Y++L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 520 NIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVVYCTLVNGY 579

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I YS +I+GL + G T+ A   F EM   +G    
Sbjct: 580 CKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTE-SGIAMD 638

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C     TY  ++ GL K    D+A  LF +++  N+  +++T N++I G        EA
Sbjct: 639 IC-----TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 693

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +    + P VVT+++++  L K G ++EA  +   M   G  PN+
Sbjct: 694 KDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 744



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/285 (26%), Positives = 132/285 (46%), Gaps = 9/285 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  IFD  +N+   P  +    L+ G CL      +  L +F  + S G+ P++  Y  
Sbjct: 517 DAQNIFDLTVNVGLHPDAVVYSMLMDGYCL--VGKMEKALRVFDAMVSAGIEPNVVVYCT 574

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK+GR+  G  +   +L+    P  + ++ +I GL    R + A   F ++   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFQAGRTVPAKVKFHEMTESG 634

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              ++ TY+ ++ GL +      A+ LF+E+   N K       N +T  T+IDG+ +  
Sbjct: 635 IAMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI------NIITLNTMIDGMFQTR 688

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++AK+LF  +    + P VVTY+ +I          EA  +   M + G +P+    N
Sbjct: 689 RVEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLN 748

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            ++ EL K  ++  A   L  +  R  +    T   L+D F   G
Sbjct: 749 HVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|242058841|ref|XP_002458566.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
 gi|241930541|gb|EES03686.1| hypothetical protein SORBIDRAFT_03g035845 [Sorghum bicolor]
          Length = 796

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 162/369 (43%), Gaps = 65/369 (17%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M + +   P + ++  +   L +    D   ++   L  +G+ P + TYN+L++  
Sbjct: 197 VFGEMRDGKTVAPDVHTYTAMIKALCRAGEIDAAFAMLAELRRSGIQPTVVTYNVLMDAL 256

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GRV   F + GR++     P  V F  LI GL    +  E  A+  +++ FG  PN 
Sbjct: 257 CKSGRVEEAFRLKGRMVEGRVRPSIVTFGILISGLARGQQFGEVGAVLQEMQGFGITPNE 316

Query: 213 ITYSTLINGLCRTGH------------------TIVALNL-----------------FEE 237
           + Y+ +I   CR GH                  T+V  NL                  +E
Sbjct: 317 VIYNEMIGWHCRKGHCSEALKLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEKILDE 376

Query: 238 MA-------------------NGNGKFGVVC-----------KPNTVTYTTIIDGLCKEG 267
           M                     G G+  +V            KPN    T  I  LCK G
Sbjct: 377 MLLAGMMVHCSLFNSVVAWHLRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSG 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A E++ Q+  K +  +V T N+LIHG C  N+  EA  +L  M++ GV+ D +T+N
Sbjct: 437 KHEEAAEIWFQVLGKGLGVNVATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++   CK  KMDEA +L + MI RG  P+  TF+  +  +C  G+V     L   M+S 
Sbjct: 497 IMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSE 556

Query: 388 GCKHTVFSY 396
           G K  + +Y
Sbjct: 557 GLKPDIVTY 565



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 145/292 (49%), Gaps = 13/292 (4%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N++     K    D  + L   +   G  PDL+T+NI ++ +C +G+V     +L ++
Sbjct: 494 TYNIMIQGCCKASKMDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQM 553

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 PD V + ++I G C    + +A    T+L   G +PN + Y+ LI G  R G+ 
Sbjct: 554 KSEGLKPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNI 613

Query: 229 IVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
             A+ + + M  NG        +P  VTY +++  +C  G V++ K +F Q   K+I   
Sbjct: 614 SDAIGILDTMKYNG-------IQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELG 666

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+ Y  +I GFC     +EA     EM  +G+ P+ +T+  +M    K+G  +EAS+L +
Sbjct: 667 VIGYTIIIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFD 726

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM-----GCKHTVF 394
            M+  G+ P++ +++TL+ GFC    ++   E    M S      GC +  F
Sbjct: 727 EMVSLGIVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAF 778



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 104/360 (28%), Positives = 162/360 (45%), Gaps = 31/360 (8%)

Query: 49  TAKLKESLRLTVKDRASLEQFLK-----------ERCKSSGQGDITAITPNEAFCIFDYM 97
           T +L   LRL    R  L +FLK           E CKS            EA  I+  +
Sbjct: 400 TGRLDLVLRLI---REMLARFLKPNDALMTACIQELCKSGKH--------EEAAEIWFQV 448

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L         TS  L+ G L +  +      + K + ++G+  D  TYNI+I   CK  +
Sbjct: 449 LGKGLGVNVATSNALIHG-LCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASK 507

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +   +++  F PD   F   +   C   ++ E   L  ++K+ G KP+++TY T
Sbjct: 508 MDEAIQLRDDMIKRGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGT 567

Query: 218 LINGLCRTGHTIVALN-LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +I+G C+      A   L E M NG        +PN V Y  +I G  + G +  A  + 
Sbjct: 568 IIDGYCKAKDMHKANEYLTELMKNG-------LRPNAVIYNALIGGYGRNGNISDAIGIL 620

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             MK   I P  VTYNSL++  C+A    E   +  + + + ++  V+ + +I+   CK 
Sbjct: 621 DTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGVIGYTIIIQGFCKI 680

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK+DEA    + M  RG+ PN  T++TLM  +  +G    A +LF  M S+G      SY
Sbjct: 681 GKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLGIVPDSVSY 740



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 128/267 (47%), Gaps = 6/267 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L  T   D VL L + + +  L P+       I   CK G+      +  ++L      +
Sbjct: 397 LRGTGRLDLVLRLIREMLARFLKPNDALMTACIQELCKSGKHEEAAEIWFQVLGKGLGVN 456

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
                +LI GLC  + + EA  +   +   G + + ITY+ +I G C+      A+ L +
Sbjct: 457 VATSNALIHGLCQGNNMKEATKVLKAMVNSGVELDRITYNIMIQGCCKASKMDEAIQLRD 516

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M     K G   KP+  T+   +   C  G V++   L  QMK + + PD+VTY ++I 
Sbjct: 517 DMI----KRGF--KPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGLKPDIVTYGTIID 570

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+C A D ++AN  L E+M  G++P+ V +N ++    +NG + +A  +L+ M   G+ P
Sbjct: 571 GYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIGILDTMKYNGIQP 630

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVS 383
              T+++LM   C  G V   K +F  
Sbjct: 631 TPVTYNSLMYWMCHAGLVEEVKAVFAQ 657



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A   +EA  + D M+  R   P L +FN+           + +L L  ++ S GL
Sbjct: 500 QGCCKASKMDEAIQLRDDMIK-RGFKPDLFTFNIFLHTYCNLGKVEEILHLLDQMKSEGL 558

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+ TY  +I+ +CK   +      L  ++++   P+AV + +LI G      I +A  
Sbjct: 559 KPDIVTYGTIIDGYCKAKDMHKANEYLTELMKNGLRPNAVIYNALIGGYGRNGNISDAIG 618

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +   +K  G +P  +TY++L+  +C  G       +F +    + + GV      + YT 
Sbjct: 619 ILDTMKYNGIQPTPVTYNSLMYWMCHAGLVEEVKAVFAQCIVKDIELGV------IGYTI 672

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           II G CK G +D+A   F +M  + I P+ +TY +L+  +  + +  EA+ L  EM+  G
Sbjct: 673 IIQGFCKIGKIDEAVMYFKEMHSRGIPPNKMTYTTLMFAYSKSGNKEEASKLFDEMVSLG 732

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           + PD V++N ++   C+   +D+       M  + +  +  +++  +DG 
Sbjct: 733 IVPDSVSYNTLISGFCEVDSLDKMVESPAEMSSQVLKQDGCSYNAFVDGI 782


>gi|312190399|gb|ADQ43199.1| unknown [Eutrema parvulum]
          Length = 1128

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/318 (30%), Positives = 162/318 (50%), Gaps = 12/318 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GDI A     A  +F+ M   R   P   ++N +     K    D  +  F+ + S   
Sbjct: 146 EGDIEA-----ARGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+ TYN LINCFCK G++  G      + +S   P+ V++++L+   C E  + +A  
Sbjct: 200 EPDVITYNSLINCFCKSGKLPKGLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIK 259

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            +  ++  G  PN  TY++L++  C+ G+   A  L  EM        V  + N VTYT 
Sbjct: 260 FYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRLANEM------LEVGVEWNVVTYTA 313

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDGLC    + +A++LF +M    + P++ +YN+LIHGF  A + + A  LL E+  +G
Sbjct: 314 LIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRG 373

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +QPD++ +   +  LC   K++ A  ++  M   G+  NT  ++TLMD +  +G      
Sbjct: 374 IQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSGNPTEGL 433

Query: 379 ELFVSMESMGCKHTVFSY 396
            L   M+ +  + TV ++
Sbjct: 434 HLLEEMQELDHEVTVVTF 451



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S N L    AK    D V   FK +   G  P ++TYNI+I+C  K G +     +
Sbjct: 96  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGL 155

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD V + S+I G     R+ +    F ++K+  C+P+VITY++LIN  C+
Sbjct: 156 FEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSCEPDVITYNSLINCFCK 215

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G     L  + EM           KPN V+Y+T++D  CKE  + +A + ++ M+    
Sbjct: 216 SGKLPKGLEFYREMKQSG------LKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGH 269

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  TY SL+   C   + ++A  L  EM++ GV+ +VVT+  ++D LC   +M EA +
Sbjct: 270 VPNEFTYTSLVDANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEK 329

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M+  GV PN ++++ L+ GF     ++ A EL   ++  G +  +  Y
Sbjct: 330 LFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLY 381



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 7/305 (2%)

Query: 93  IFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +FD + + R    P    F+ LF  L      +     F ++    +FP   + N L++ 
Sbjct: 48  VFDELWSTRNVCVPGFGVFDALFSVLIDLGMLEEATQCFSKMKRFRVFPKTRSCNGLLHK 107

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           F K+G+          ++ +   P    +  +I  +  E  I  A  LF ++K  G  P+
Sbjct: 108 FAKLGKTDGVKRFFKDMIGAGSKPTVFTYNIMIDCMWKEGDIEAARGLFEEMKFRGLIPD 167

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY+++I+G  + G     +  FEEM +      + C+P+ +TY ++I+  CK G + K
Sbjct: 168 TVTYNSMIDGYGKVGRLDDTVYFFEEMKS------MSCEPDVITYNSLINCFCKSGKLPK 221

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             E + +MK   + P+VV+Y++L+  FC  +   +A    ++M   G  P+  T+  ++D
Sbjct: 222 GLEFYREMKQSGLKPNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVD 281

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             CK G + +A RL   M+  GV  N  T++ L+DG C   R+  A++LF  M + G   
Sbjct: 282 ANCKIGNLSDAFRLANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIP 341

Query: 392 TVFSY 396
            + SY
Sbjct: 342 NLASY 346



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 143/328 (43%), Gaps = 42/328 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ L     K       +  +  +   G  P+ +TY  L++  CK+G +S  F +
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQAIKFYVDMRRVGHVPNEFTYTSLVDANCKIGNLSDAFRL 295

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L      + V +T+LI GLC   R+ EA  LF K+   G  PN+ +Y+ LI+G  +
Sbjct: 296 ANEMLEVGVEWNVVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVK 355

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL L  E+       G   +P+ + Y T I GLC    ++ AK +  +M++  I
Sbjct: 356 AKNMDRALELLNELK------GRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGI 409

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM----------------------------- 315
             + + Y +L+  +  + +  E   LL EM                              
Sbjct: 410 KANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCKNKLVSKAID 469

Query: 316 -------DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
                  D G+QP+   +  ++D LCK  ++  A+ L E M   G+ P+ + +++LMDG 
Sbjct: 470 YFGRMSNDFGLQPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGN 529

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G +  A  L   M  +G K  + +Y
Sbjct: 530 LKQGNMLEALALRDKMAEIGMKLDLLAY 557



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 76/279 (27%), Positives = 131/279 (46%), Gaps = 7/279 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L   +       LF ++ + G+ P+L +YN LI+ F K   +     +L 
Sbjct: 308 VVTYTALIDGLCDAERMKEAEKLFGKMVTAGVIPNLASYNALIHGFVKAKNMDRALELLN 367

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      PD + + + I GLC   +I  A  +  +++  G K N + Y+TL++   ++G
Sbjct: 368 ELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVVMNEMQENGIKANTLIYTTLMDAYFKSG 427

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNIN 285
           +    L+L EEM   + +  VV      T+  +IDGLCK   V KA + F +M  D  + 
Sbjct: 428 NPTEGLHLLEEMQELDHEVTVV------TFCVLIDGLCKNKLVSKAIDYFGRMSNDFGLQ 481

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+   Y ++I G C  N    A  L  +M  +G+ PD   +  +MD   K G M EA  L
Sbjct: 482 PNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGLVPDRTAYTSLMDGNLKQGNMLEALAL 541

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            + M   G+  +   +++L+ GF    ++  A+     M
Sbjct: 542 RDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARSFLEEM 580



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/253 (28%), Positives = 119/253 (47%), Gaps = 5/253 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N L     K K+ D  L L   L   G+ PDL  Y   I   C + ++    VV
Sbjct: 341 PNLASYNALIHGFVKAKNMDRALELLNELKGRGIQPDLLLYGTFIWGLCGLEKIEAAKVV 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +  +    + + +T+L+          E   L  +++    +  V+T+  LI+GLC+
Sbjct: 401 MNEMQENGIKANTLIYTTLMDAYFKSGNPTEGLHLLEEMQELDHEVTVVTFCVLIDGLCK 460

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A++ F  M+N    FG+  +PN   YT +IDGLCKE  V  A  LF QM  + +
Sbjct: 461 NKLVSKAIDYFGRMSN---DFGL--QPNAAVYTAMIDGLCKENQVKAATTLFEQMAQEGL 515

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   Y SL+ G     +  EA  L  +M + G++ D++ +  ++    +  ++ +A  
Sbjct: 516 VPDRTAYTSLMDGNLKQGNMLEALALRDKMAEIGMKLDLLAYTSLVWGFSQCNQLQKARS 575

Query: 345 LLELMILRGVNPN 357
            LE MI   + P+
Sbjct: 576 FLEEMIGEEILPD 588


>gi|410109941|gb|AFV61050.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           rhodocnemis]
          Length = 428

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 93/263 (35%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +  H D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 172 PSVVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANEL 231

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 232 FDEMLVKGLIPNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIYGLCK 291

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 292 KGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 345

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 346 RLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 405

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 406 LLKEMQRNGHAPSVVTYNVLMNG 428



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 136 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGHLDEGFR 195

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 196 LKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 255

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ +++ M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 256 KNGRVDFAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 309

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 310 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAE 369

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 370 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTY 422



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 114 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 173

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G  P+V TYS LINGLC+      A  LF+
Sbjct: 174 VVSYNTLMNGYIRLGHLDEGFRLKSAMLASGVLPDVYTYSVLINGLCKESKMDDANELFD 233

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G++  PN VT+TT+IDG CK G VD A E++ +M  +++ PD++TYN+LI+
Sbjct: 234 EMLVK----GLI--PNGVTFTTLIDGHCKNGRVDFAMEIYKRMLSQSLLPDLITYNTLIY 287

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 288 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 347

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 348 DDVAYAALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 387



 Score = 59.3 bits (142), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 263 AMEIYKRMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 321

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+ +LI GLC E R ++A  +  ++ + G K
Sbjct: 322 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYAALISGLCQEGRSVDAEKMLREMLSVGLK 381

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 382 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 428


>gi|357167657|ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/304 (31%), Positives = 155/304 (50%), Gaps = 8/304 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F+  +      P + SFN+    + +       L L +R+   G  PD  T NI
Sbjct: 209 QDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNI 268

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L+   C++  VS G  VL R+ R     P+ V +TS+I G C   R+ +A A++  +   
Sbjct: 269 LVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGC 328

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN +TY+ LING  + G+   A+ ++++M          C P+ VT++T+IDG C+ 
Sbjct: 329 GTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRR------CPPDVVTFSTLIDGYCRC 382

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGVQPDVVT 325
           G +D A   + +M    I P+  T++ +I  FC  N   EA   L E+ M   + P    
Sbjct: 383 GQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFI 442

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N ++D LCK GK+DEA+ +L  M  +G  P+  T++ L+ G C+ GR++ A   F  M 
Sbjct: 443 CNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMV 502

Query: 386 SMGC 389
             GC
Sbjct: 503 DTGC 506



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 136/290 (46%), Gaps = 6/290 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M +     P     + L G  A     D   +L  +    G   + Y YN L
Sbjct: 139 DALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAAALLSKAPQFGCCVEAYAYNKL 198

Query: 149 INCFCKMGRVSHGFVVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +N F   GRV     +  G I    ++PD  +F   IKG+C    + +A  L  ++  FG
Sbjct: 199 MNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFG 258

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+ +T + L+ GLCR         +   +         VC PN VTYT++I G CK G
Sbjct: 259 CSPDTVTNNILVGGLCRVKEVSRGREVLRRLQRDG-----VCMPNVVTYTSVISGYCKSG 313

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  ++  M      P+ VTYN LI+G+  A +   A  +  +M+ +   PDVVTF+
Sbjct: 314 RMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFS 373

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++D  C+ G++D+A R    M    + PN  TFS ++  FC   R   A
Sbjct: 374 TLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEA 423



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 159/335 (47%), Gaps = 25/335 (7%)

Query: 69  FLKERCKSSGQGDITAI----TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           FL   C ++G  D  A      P    C+  Y  N           N   GC        
Sbjct: 162 FLAGSCANAGFLDAAAALLSKAPQFGCCVEAYAYN--------KLMNSFIGC----GRVQ 209

Query: 125 TVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
             ++LF+     G + PD++++N+ I   C++G V     ++ R+     +PD V    L
Sbjct: 210 DAVALFEGWIQGGAYSPDVWSFNVAIKGVCQVGDVQKALELVERMAEFGCSPDTVTNNIL 269

Query: 184 IKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           + GLC    +     +  +L+  G C PNV+TY+++I+G C++G    A+ ++ +M    
Sbjct: 270 VGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDM---- 325

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              G    PN VTY  +I+G  K G +  A  ++ QM  +   PDVVT+++LI G+C   
Sbjct: 326 --IGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILRRCPPDVVTFSTLIDGYCRCG 383

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTF 361
             ++A     EM    +QP+  TF++I+   CK  +  EA R L+ + +R  + P     
Sbjct: 384 QLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEALRFLKELNMRTDIAPRAFIC 443

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + ++D  C  G+V+ A  + + ME  GC+   ++Y
Sbjct: 444 NPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTY 478



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 84/284 (29%), Positives = 143/284 (50%), Gaps = 9/284 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  +   L ++  +   L LF ++ + +G FP+    + L       G +    
Sbjct: 118 PPSAHSYRYVISMLCQSSRHTDALKLFDQMTDQSGHFPNARFLSFLAGSCANAGFLDAAA 177

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC-KPNVITYSTLING 221
            +L +  +     +A A+  L+       R+ +A ALF      G   P+V +++  I G
Sbjct: 178 ALLSKAPQFGCCVEAYAYNKLMNSFIGCGRVQDAVALFEGWIQGGAYSPDVWSFNVAIKG 237

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-K 280
           +C+ G    AL L E MA    +FG  C P+TVT   ++ GLC+   V + +E+  ++ +
Sbjct: 238 VCQVGDVQKALELVERMA----EFG--CSPDTVTNNILVGGLCRVKEVSRGREVLRRLQR 291

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D    P+VVTY S+I G+C +    +A  +  +M+  G  P+ VT+NV+++   K G M 
Sbjct: 292 DGVCMPNVVTYTSVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMG 351

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            A  + + MILR   P+  TFSTL+DG+C  G+++ A   +  M
Sbjct: 352 SAVAVYQQMILRRCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEM 395



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 133/292 (45%), Gaps = 32/292 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYN 146
            +A  + + M     SP  +T+ N+L G L + K       + +RL   G+  P++ TY 
Sbjct: 245 QKALELVERMAEFGCSPDTVTN-NILVGGLCRVKEVSRGREVLRRLQRDGVCMPNVVTYT 303

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +I+ +CK GR+     V   ++    TP+AV +  LI G      +  A A++ ++   
Sbjct: 304 SVISGYCKSGRMEDAMAVYNDMIGCGTTPNAVTYNVLINGYGKAGNMGSAVAVYQQMILR 363

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK------- 250
            C P+V+T+STLI+G CR G    A+  + EM+    +     F ++    CK       
Sbjct: 364 RCPPDVVTFSTLIDGYCRCGQLDDAMRTWTEMSQYQIQPNAHTFSIIILSFCKQNRSAEA 423

Query: 251 --------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                         P       +ID LCK G VD+A  + ++M+ K   PD  TY  LI 
Sbjct: 424 LRFLKELNMRTDIAPRAFICNPVIDVLCKGGKVDEANLILMEMEGKGCRPDKYTYTILII 483

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           G C     +EA     +M+D G  PD +T N  +  L K G   E  R++++
Sbjct: 484 GHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLLKAGMPSEVDRIMKI 535


>gi|410109893|gb|AFV61026.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           fucata]
          Length = 414

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPS 159

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFD 219

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN+VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 220 EMLVK----GLV--PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 273

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK+G +D A    + MI      
Sbjct: 274 GLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRL 333

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  G    A+++   M S+G K    +Y
Sbjct: 334 DDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTY 373



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKDGDIRIAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES+I +A  LF ++   G  PN +T++TLI+G C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGLCKESKIDDANELFDEMLVKGLVPNSVTFTTLIDGHC 241

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 295

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ +  + D V +  ++  LC+ G   +A 
Sbjct: 296 LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAE 355

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 408



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKIDDANEL 217

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P++V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 218 FDEMLVKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CK+G +D A E   +M  +N 
Sbjct: 278 KGDLKQAHHLIDEMSMKG------LKPDKITYTTLIDGCCKDGDLDTAFEHRKRMIQENT 331

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 332 RLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 391

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 249 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 307

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D V +T+LI GLC E   ++A  +  ++ + G K
Sbjct: 308 DGCCKDGDLDTAFEHRKRMIQENTRLDDVVYTALISGLCREGXSVDAEKMLREMLSVGLK 367

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 368 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Vitis vinifera]
          Length = 822

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 102/290 (35%), Positives = 151/290 (52%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L S N L   LAK +  +   +L+K++ ++G+ P L T+N LIN   K G+V    ++L 
Sbjct: 163 LYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILS 222

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I +   +PD   +TSLI G C    +  A  +F ++   GC PN +TYSTLINGLC  G
Sbjct: 223 QIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEG 282

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL++ EEM           +P   TYT  I  LC     ++A EL  +MK +   P
Sbjct: 283 RVDEALDMLEEMIEKG------IEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRP 336

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G         A  L  +M+ +G+ P+ VT+N +++ELC  G+   A ++ 
Sbjct: 337 NVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIF 396

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M   G   NT T++ ++ G CL G +  A  LF  M  MG   TV +Y
Sbjct: 397 HWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTY 446



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/337 (33%), Positives = 158/337 (46%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I   +     SP   T  +L+ G   + ++ D    +F R+   G  P+  TY+ L
Sbjct: 216 EAELILSQIFQYDLSPDVFTYTSLILGH-CRNRNLDLAFGVFDRMVKEGCDPNSVTYSTL 274

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C  GRV     +L  ++     P    +T  I  LCA     EA  L  ++K  GC
Sbjct: 275 INGLCNEGRVDEALDMLEEMIEKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGC 334

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKFGVVCK 250
           +PNV TY+ LI+GL R G   VA+ L+ +M                      G+F    K
Sbjct: 335 RPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALK 394

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                       NT TY  II GLC  G ++KA  LF +M      P VVTYN+LI+G+ 
Sbjct: 395 IFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLINGYL 454

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              + N A  LL  M + G +PD  T+N ++    K GK++ AS   + M+  G+NPN  
Sbjct: 455 TKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNPNPV 514

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++ L+DG    G+V+ A  L   ME MGC   V SY
Sbjct: 515 SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESY 551



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 100/325 (30%), Positives = 162/325 (49%), Gaps = 33/325 (10%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++  L   L++    +  + L+ ++   GL P+  TYN LIN  C  GR S 
Sbjct: 332 RGCRPNVQTYTALISGLSRLGKLEVAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFST 391

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +       +   +  +IKGLC    I +A  LF K+   G  P V+TY+TLIN
Sbjct: 392 ALKIFHWMEGHGSLANTQTYNEIIKGLCLGGDIEKAMVLFEKMLKMGPLPTVVTYNTLIN 451

Query: 221 GLCRTGHTIVALNL---------------FEEMANGNGKFG------------VVC--KP 251
           G    G+   A  L               + E+ +G  K+G            V C   P
Sbjct: 452 GYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVSGFSKWGKLESASFYFQEMVECGLNP 511

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N V+YT +IDG  K+G VD A  L  +M++   NP+V +YN++I+G    N ++EA  + 
Sbjct: 512 NPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKIC 571

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M++QG+ P+V+T+  ++D LC+NG+   A ++   M  R   PN  T+S+L+ G C  
Sbjct: 572 DKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQE 631

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G+ + A+     M  +GC+ T+ +Y
Sbjct: 632 GKADEAER----MSEIGCEPTLDTY 652



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/408 (26%), Positives = 182/408 (44%), Gaps = 32/408 (7%)

Query: 4   VSSTCSFHFTSISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDR 63
           + S C  H  + S      NFSS  PH     +  +  EP     +       R+  K  
Sbjct: 5   LKSPCLVHLQNHSSVLGFLNFSSK-PHISSHFAVPASREPFQAIVSRVCAILSRVQWKGS 63

Query: 64  ASLEQFLKERCKSSGQGDITAITPN-EAFCIFDYMLNMRP-------------------- 102
           + L+Q L  + K+    +I A+  + E+   F Y ++ RP                    
Sbjct: 64  SELKQ-LSPQLKAHHVAEIVAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDR 122

Query: 103 --SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
             +P       ++  C    +    V      ++  G    LY+ N L+    K   V  
Sbjct: 123 VFAPADHIRILMIKAC-RNEEEIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEG 181

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +  ++L S   P  + F +LI  L  + ++ EA  + +++  +   P+V TY++LI 
Sbjct: 182 ARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREAELILSQIFQYDLSPDVFTYTSLIL 241

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR  +  +A  +F+ M          C PN+VTY+T+I+GLC EG VD+A ++  +M 
Sbjct: 242 GHCRNRNLDLAFGVFDRMVKEG------CDPNSVTYSTLINGLCNEGRVDEALDMLEEMI 295

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K I P V TY   I   C      EA  L+  M  +G +P+V T+  ++  L + GK++
Sbjct: 296 EKGIEPTVYTYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLE 355

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            A  L   M+  G+ PNT T++ L++  C+ GR + A ++F  ME  G
Sbjct: 356 VAIGLYHKMLKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHG 403



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 145/293 (49%), Gaps = 11/293 (3%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F  M+    +P P+ S+  L    +K    D  LSL KR+   G  P++ +YN +IN   
Sbjct: 501 FQEMVECGLNPNPV-SYTALIDGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLS 559

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K  R S    +  +++     P+ + +T+LI GLC   R   A  +F  ++   C PN+ 
Sbjct: 560 KENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLY 619

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TYS+LI GLC+ G    A  + E          + C+P   TY+T++ GLC++G   +A+
Sbjct: 620 TYSSLIYGLCQEGKADEAERMSE----------IGCEPTLDTYSTLVSGLCRKGRFYEAE 669

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +L   MK++   PD   Y SL+   C   + + A  +   +  +G Q  +  +  ++  L
Sbjct: 670 QLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICAL 729

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           CK G+++EA  L + M+ +  N +   ++ L+DG    G ++   +L   MES
Sbjct: 730 CKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIMES 782



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 123/281 (43%), Gaps = 34/281 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +   L+K   +     +  ++   GL P++ TY  LI+  C+ GR    F +
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFAFKI 605

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+   ++SLI GLC E +  EA     ++   GC+P + TYSTL++GLCR
Sbjct: 606 FHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAE----RMSEIGCEPTLDTYSTLVSGLCR 661

Query: 225 TGHTIVALNLFEEMANGN---------GKFGVVCKPNTV--------------------T 255
            G    A  L ++M                   CK   V                     
Sbjct: 662 KGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSI 721

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  +I  LCK G V++A+ LF  M +K  N D + +  L+ G     + +    LL  M 
Sbjct: 722 YRALICALCKAGQVEEAQALFDNMLEKEWNADEIVWTVLVDGLLKEGELDLCMKLLHIME 781

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLE-LMILRGVN 355
            +   P++ T+ ++  EL + GK  E+  L + L +L+  N
Sbjct: 782 SKNFTPNIQTYVILGRELSRIGKSIESEPLADKLKVLKDSN 822


>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 528

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 160/331 (48%), Gaps = 30/331 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   FD ML  R   P + ++NLL     K    D  L LF  +   G  P + TYNI
Sbjct: 152 QEARSFFDAMLE-RGLTPNIPTYNLLMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNI 210

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C  GRV     +  ++     +PD+  +++L+ GL    R+ EA  +F ++   G
Sbjct: 211 LLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRG 270

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GK-------- 244
              +++ Y++L+  L + G+      L +EM+                  GK        
Sbjct: 271 VAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAR 330

Query: 245 --FGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
             F  +    CKP+ ++Y  +ID   + G   +A+++  +M +    P+  TYNSLIH  
Sbjct: 331 EVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWL 390

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                 +EA  +L EM   G +PDVVT+N +MD L K G+   A+RL + M  +GV P+T
Sbjct: 391 ATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDT 450

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            +++  +DG     R++ A  LF  M+++GC
Sbjct: 451 LSYAVRIDGLAFDDRLDEALVLFKDMKAVGC 481



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 152/328 (46%), Gaps = 29/328 (8%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + ++ S P   ++  L   L K        S F  +   GL P++ TYN+L++ F K+G+
Sbjct: 126 MKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRKVGQ 185

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +   + R  F P  V +  L+  LC+  R+  A  LF K+   GC P+  TYST
Sbjct: 186 LDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGCSPDSYTYST 245

Query: 218 LINGLCRTGHTIVALNLFEEMA---------NGNGKFGVVCK------------------ 250
           L+NGL ++G    A  +F EM          N N     + K                  
Sbjct: 246 LVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKG 305

Query: 251 --PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+  ++ TI+D L K    D A+E+F +M +    PD+++YN LI  +    D  +A 
Sbjct: 306 FHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQAR 365

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +L EM++ G  P+  T+N ++  L  +G++DEA  +LE M   G  P+  T++ LMD  
Sbjct: 366 QMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDML 425

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G    A  LF  M+  G +    SY
Sbjct: 426 GKRGENQRAARLFQQMKDKGVEPDTLSY 453



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L  +  ++    ++K+L   G   D + YN+LI  F + G++     +
Sbjct: 63  PTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAMEM 122

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   +  L+  L    R+ EA + F  +   G  PN+ TY+ L++   +
Sbjct: 123 FREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNLLMDAFRK 182

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL LF EM           +P+ VTY  ++D LC  G V  A++LF +M     
Sbjct: 183 VGQLDMALGLFAEMKRRG------FQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDGC 236

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD  TY++L++G   +    EA+ +  EM+D+GV  D+V +N ++  L K G MD   +
Sbjct: 237 SPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDRVWK 296

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ M  +G +P+  +F+T+MD      + + A+E+F  M   GCK  + SY
Sbjct: 297 LMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISY 348



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 134/283 (47%), Gaps = 10/283 (3%)

Query: 116 CLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
            LA     D + +L K + + G  L P+  T   LI  + +  +    F +  +      
Sbjct: 4   VLASWGILDPLETLLKEMVAEGRPLRPN--TLVKLITAYGRGNKSGDAFDLFNQAESFAC 61

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +P   AFT LI  L        A  ++ KL   GC+ +   Y+ LI    R+G    A+ 
Sbjct: 62  SPTVHAFTKLIDILVNSGEFERAELVYKKLVQKGCQLDRFAYNVLIRYFGRSGQLDSAME 121

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +F EM           +P+  TY  +++ L K G V +A+  F  M ++ + P++ TYN 
Sbjct: 122 MFREMKIKG------SEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNL 175

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+  F      + A  L  EM  +G QP VVT+N+++D LC  G++  A +L   M   G
Sbjct: 176 LMDAFRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTGDG 235

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +P++ T+STL++G   +GRV  A ++F  M   G    + +Y
Sbjct: 236 CSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNY 278



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/258 (27%), Positives = 118/258 (45%), Gaps = 7/258 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F  M++ R     L ++N L   LAK  + D V  L K ++  G  PD +++N 
Sbjct: 257 EEAHKVFREMVD-RGVAVDLVNYNSLLATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNT 315

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++   K  +      V  R++ S   PD +++  LI          +A  +  ++   G
Sbjct: 316 IMDALGKANKPDAAREVFARMVESGCKPDLISYNILIDSYARFGDAAQARQMLEEMVEAG 375

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P   TY++LI+ L   G    A  + EEM          C+P+ VTY  ++D L K G
Sbjct: 376 FIPETKTYNSLIHWLATDGQVDEAFAVLEEMETAG------CRPDVVTYNRLMDMLGKRG 429

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A  LF QMKDK + PD ++Y   I G  + +  +EA  L  +M   G   D   + 
Sbjct: 430 ENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYR 489

Query: 328 VIMDELCKNGKMDEASRL 345
           +++    + G  +  ++L
Sbjct: 490 ILIRAAHRAGDTELEAQL 507



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 58/133 (43%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   LA     D   ++ + + + G  PD+ TYN L++   K G       +
Sbjct: 378 PETKTYNSLIHWLATDGQVDEAFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARL 437

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++      PD +++   I GL  + R+ EA  LF  +KA GC  +   Y  LI    R
Sbjct: 438 FQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKDMKAVGCPVDKAMYRILIRAAHR 497

Query: 225 TGHTIVALNLFEE 237
            G T +   L  E
Sbjct: 498 AGDTELEAQLKHE 510


>gi|229914885|gb|ACQ90610.1| putative PPR repeat protein [Eutrema halophilum]
          Length = 1023

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 91/290 (31%), Positives = 153/290 (52%), Gaps = 12/290 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GDI A     A  +F+ M   R   P   ++N +     K    D  +  F+ + S   
Sbjct: 146 EGDIEA-----ASGLFEEM-KFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSMSC 199

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+ TYN LINCFCK G++  G      + +S   P+ V++++L+   C E  + +A  
Sbjct: 200 EPDVITYNTLINCFCKFGKLPKGLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALK 259

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            +  ++  G  PN  TY++L++  C+ G+   A  L +EM+       V  + N VTYT 
Sbjct: 260 FYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQ------VGVEWNVVTYTA 313

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDGLC    + +A+ELF +M    + P++ +Y +LIHGF  A + + A  LL EM  +G
Sbjct: 314 LIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKGRG 373

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           ++PD++ +   +  LC   K++ A  ++  M  +G+  NT  ++TLMD +
Sbjct: 374 IKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGIKANTFIYTTLMDAY 423



 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 99/310 (31%), Positives = 154/310 (49%), Gaps = 11/310 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLL--FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EA   F  M   R  P   +   LL  F  L KT   D +   FK +   G  P ++TYN
Sbjct: 81  EALQCFSKMKRCRVFPKTRSCNGLLHKFARLGKT---DGMKRFFKDMIGAGSKPTVFTYN 137

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I+I+C CK G +     +   +      PD V + S+I G     R+ +    F ++K+ 
Sbjct: 138 IMIDCMCKEGDIEAASGLFEEMKFRGLIPDTVTYNSMIDGYGKVGRLDDTVYFFEEMKSM 197

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C+P+VITY+TLIN  C+ G     L  F EM           KPN V+Y+T++D  CKE
Sbjct: 198 SCEPDVITYNTLINCFCKFGKLPKGLEFFREMKQSG------LKPNVVSYSTLVDAFCKE 251

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             + +A + ++ M+   + P+  TY SL+  +C   + ++A  L  EM   GV+ +VVT+
Sbjct: 252 DMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRLADEMSQVGVEWNVVTY 311

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D LC   ++ EA  L   M+  GV PN ++++ L+ GF     ++ A EL   M+ 
Sbjct: 312 TALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVKAKNMDRALELLDEMKG 371

Query: 387 MGCKHTVFSY 396
            G K  +  Y
Sbjct: 372 RGIKPDLLLY 381



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/305 (28%), Positives = 154/305 (50%), Gaps = 7/305 (2%)

Query: 93  IFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +FD + + R    P    F+ LF  L +   ++  L  F ++    +FP   + N L++ 
Sbjct: 48  VFDVLWSTRNVCVPGFGVFDALFSVLIEEDMFEEALQCFSKMKRCRVFPKTRSCNGLLHK 107

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           F ++G+          ++ +   P    +  +I  +C E  I  A+ LF ++K  G  P+
Sbjct: 108 FARLGKTDGMKRFFKDMIGAGSKPTVFTYNIMIDCMCKEGDIEAASGLFEEMKFRGLIPD 167

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY+++I+G  + G     +  FEEM +      + C+P+ +TY T+I+  CK G + K
Sbjct: 168 TVTYNSMIDGYGKVGRLDDTVYFFEEMKS------MSCEPDVITYNTLINCFCKFGKLPK 221

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             E F +MK   + P+VV+Y++L+  FC  +   +A    ++M   G+ P+  T+  ++D
Sbjct: 222 GLEFFREMKQSGLKPNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVD 281

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             CK G + +A RL + M   GV  N  T++ L+DG C   R+  A+ELF  M + G   
Sbjct: 282 AYCKIGNLSDAFRLADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIP 341

Query: 392 TVFSY 396
            + SY
Sbjct: 342 NLASY 346



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 42/322 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ L     K       L  +  +   GL P+ +TY  L++ +CK+G +S  F +
Sbjct: 236 PNVVSYSTLVDAFCKEDMMQQALKFYVDMRRLGLVPNEHTYTSLVDAYCKIGNLSDAFRL 295

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +     + V +T+LI GLC   RI EA  LF K+   G  PN+ +Y+ LI+G  +
Sbjct: 296 ADEMSQVGVEWNVVTYTALIDGLCDVERIKEAEELFGKMVTAGVIPNLASYTALIHGFVK 355

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   AL L +EM  G G      KP+ + Y T I  LC    ++ AK +  +M++K I
Sbjct: 356 AKNMDRALELLDEM-KGRG-----IKPDLLLYGTFIWSLCGLEKIEAAKVVMNEMQEKGI 409

Query: 285 NPDVVTYNSLIHGFCYANDWNEAN------------------CLLIEMM----------- 315
             +   Y +L+  +  + + +E                    C+LI+ +           
Sbjct: 410 KANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCKNKLVSKAID 469

Query: 316 -------DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
                  D G+Q +   +  ++D LCK  +++ A+ L E M  +G+ P+ + +++L+DG 
Sbjct: 470 YFGRISNDFGLQANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGLVPDRTAYTSLIDGK 529

Query: 369 CLTGRVNHAKELFVSMESMGCK 390
              G V  A  L   M  +G +
Sbjct: 530 LKQGNVVQALALRDKMAEIGVE 551



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 101/232 (43%), Gaps = 10/232 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+  L     K K+ D  L L   +   G+ PDL  Y   I   C + ++    VV
Sbjct: 341 PNLASYTALIHGFVKAKNMDRALELLDEMKGRGIKPDLLLYGTFIWSLCGLEKIEAAKVV 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +       +   +T+L+          E   L  ++     +   +T+  LI+GLC+
Sbjct: 401 MNEMQEKGIKANTFIYTTLMDAYFKSENPSEGLHLLEEMLELDIEVTAVTFCVLIDGLCK 460

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A++ F  ++N    FG+  + N   YT +IDGLCKE  V+ A  LF QM  K +
Sbjct: 461 NKLVSKAIDYFGRISN---DFGL--QANAAIYTAMIDGLCKEDQVEAATTLFEQMAQKGL 515

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            PD   Y SLI G     +  +A  L  +M + GV+           +LC+N
Sbjct: 516 VPDRTAYTSLIDGKLKQGNVVQALALRDKMAEIGVES-----GARFGDLCQN 562


>gi|357151708|ref|XP_003575878.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Brachypodium distachyon]
          Length = 676

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 97/305 (31%), Positives = 161/305 (52%), Gaps = 7/305 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +FD M+      P   SF  L+ GC  +    + V +L   +   G   D  T  +++  
Sbjct: 171 VFDGMVTRGGLLPDARSFRALIVGC-CRDGRMEEVDALLTVMQGQGFCLDNATCTVIVRV 229

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           FC+ GR      +  R+L     P+ V +T+ I GLC  + + +A  +  ++ A G KPN
Sbjct: 230 FCQKGRFRDVSELFRRMLEMGTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPN 289

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V T+++LINGLC+ G T  A  LF ++   +       KPN  TYT +I G CKEG + +
Sbjct: 290 VYTHTSLINGLCKIGWTERAFRLFLKLIKSSSY-----KPNVHTYTVMIGGYCKEGKLAR 344

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A+ L  +M ++ + P+  TY +LI G C    +N A  L+ +M  +G QP++ T+N ++D
Sbjct: 345 AEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALID 404

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LCK GK+ EA ++L +   +G+  +  T++ ++   C  G + +A +LF  M   GC  
Sbjct: 405 GLCKKGKIQEAYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHP 464

Query: 392 TVFSY 396
            + +Y
Sbjct: 465 DIHTY 469



 Score =  151 bits (381), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 148/305 (48%), Gaps = 8/305 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  ML M  +PP + ++      L K  +      + + + + GL P++YT+  LIN  
Sbjct: 242 LFRRMLEM-GTPPNVVNYTAWIDGLCKRAYVKQAFYVLEEMVAKGLKPNVYTHTSLINGL 300

Query: 153 CKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           CK+G     F +  ++++S  + P+   +T +I G C E ++  A  L  ++   G  PN
Sbjct: 301 CKIGWTERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPN 360

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
             TY+TLI+G C+ G    A  L  +M           +PN  TY  +IDGLCK+G + +
Sbjct: 361 TNTYTTLISGHCKEGSFNCAFELMNKMRREG------FQPNIYTYNALIDGLCKKGKIQE 414

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A ++     ++ +  D VTY  +I   C       A  L   M + G  PD+ T+  ++ 
Sbjct: 415 AYKVLRMANNQGLQLDKVTYTVMITEHCKQGHITYALDLFNRMAENGCHPDIHTYTTLIA 474

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             C+  +M+E+ +L +  +   + P   T+++++ G+C  G+   A  +F  M   GC+ 
Sbjct: 475 RYCQQRQMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQA 534

Query: 392 TVFSY 396
              +Y
Sbjct: 535 DSITY 539



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 152/303 (50%), Gaps = 18/303 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF-KRLNSTGLFPDLYTYN 146
            +AF + + M+     P   T  +L+ G L K    +    LF K + S+   P+++TY 
Sbjct: 272 KQAFYVLEEMVAKGLKPNVYTHTSLING-LCKIGWTERAFRLFLKLIKSSSYKPNVHTYT 330

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ++I  +CK G+++   ++LGR++     P+   +T+LI G C E     A  L  K++  
Sbjct: 331 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLISGHCKEGSFNCAFELMNKMRRE 390

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PN+ TY+ LI+GLC+ G    A  +   MAN  G      + + VTYT +I   CK+
Sbjct: 391 GFQPNIYTYNALIDGLCKKGKIQEAYKVLR-MANNQG-----LQLDKVTYTVMITEHCKQ 444

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN-----CLLIEMMDQGVQP 321
           G +  A +LF +M +   +PD+ TY +LI  +C      E+      CL IE++     P
Sbjct: 445 GHITYALDLFNRMAENGCHPDIHTYTTLIARYCQQRQMEESQKLFDKCLAIELV-----P 499

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
              T+  ++   CK GK   A R+ E M+  G   ++ T+  L+ G C   R+  A+ L+
Sbjct: 500 TKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYGALISGLCKESRLEEARALY 559

Query: 382 VSM 384
             M
Sbjct: 560 EGM 562



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 145/306 (47%), Gaps = 6/306 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             AF +F  ++      P + ++ ++ G   K         L  R+   GL P+  TY  
Sbjct: 307 ERAFRLFLKLIKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 366

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G  +  F ++ ++ R  F P+   + +LI GLC + +I EA  +       G
Sbjct: 367 LISGHCKEGSFNCAFELMNKMRREGFQPNIYTYNALIDGLCKKGKIQEAYKVLRMANNQG 426

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + +TY+ +I   C+ GH   AL+LF  MA  NG     C P+  TYTT+I   C++ 
Sbjct: 427 LQLDKVTYTVMITEHCKQGHITYALDLFNRMAE-NG-----CHPDIHTYTTLIARYCQQR 480

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++++++LF +     + P   TY S+I G+C       A  +   M+  G Q D +T+ 
Sbjct: 481 QMEESQKLFDKCLAIELVPTKQTYTSMIAGYCKVGKSTSALRVFERMVQNGCQADSITYG 540

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCK  +++EA  L E M+ + + P   T  TL   +C   +   A  +   ++  
Sbjct: 541 ALISGLCKESRLEEARALYEGMLDKRLVPCEVTPVTLAFEYCRREKAVVAVSILDRLDKR 600

Query: 388 GCKHTV 393
              HTV
Sbjct: 601 RKNHTV 606


>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
 gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
          Length = 381

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 89/262 (33%), Positives = 141/262 (53%), Gaps = 6/262 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           + L   + + G  P++ TYN++I+  C+ G V     +L  +      P+ V + +++KG
Sbjct: 1   MELIDLMRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKG 60

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC+  R ++A  L  ++    C PN  T + ++N L R G         E+M+    K G
Sbjct: 61  LCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMS----KHG 116

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             C  N VTY  +I G+C++G VD A EL   M+     PD+VTYN+L+ G C A+ W +
Sbjct: 117 --CTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWED 174

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L+I+M      PD VTFN I+  LC+ G + +A  + + M  +G NPN++T+ST++ 
Sbjct: 175 AEELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIG 234

Query: 367 GFCLTGRVNHAKELFVSMESMG 388
           G    G++  A EL   M S G
Sbjct: 235 GLAKAGKMEQALELLNEMASKG 256



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 144/292 (49%), Gaps = 11/292 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N++   L++      V    ++++  G   ++ TYN +I+  C+ G V     
Sbjct: 83  PPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALE 142

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +      PD V + +L+KGLC+  +  +A  L  K+    C P+ +T++T+I+ LC
Sbjct: 143 LLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMIKMSQNDCLPDNVTFNTIISFLC 202

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G  + A  +F++M          C PN+ TY+TII GL K G +++A EL  +M  K 
Sbjct: 203 QKGLILQAFEVFKQMPEKG------CNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKG 256

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            N D + Y  L       +   E   ++ ++ D G+ P  V FN ++  LC+NGK D A 
Sbjct: 257 YNTDKM-YQLLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAI 315

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            +L  M+  G  P+  T+  L++G    G +  A+EL   +    C   V S
Sbjct: 316 DVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELVSRL----CSRDVLS 363



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 154/303 (50%), Gaps = 10/303 (3%)

Query: 97  MLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           +LN  PS    P   ++N +   L   + +     L   +      P+  T N+++N   
Sbjct: 38  LLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAEELLDEMVRENCPPNEATVNVIVNTLS 97

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           + G +      L ++ +   T + V + ++I G+C +  +  A  L + +++FGCKP+++
Sbjct: 98  RKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIV 157

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY+TL+ GLC       A  L  +M+  +      C P+ VT+ TII  LC++G + +A 
Sbjct: 158 TYNTLLKGLCSADQWEDAEELMIKMSQND------CLPDNVTFNTIISFLCQKGLILQAF 211

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           E+F QM +K  NP+  TY+++I G   A    +A  LL EM  +G   D + + ++ + L
Sbjct: 212 EVFKQMPEKGCNPNSTTYSTIIGGLAKAGKMEQALELLNEMASKGYNTDKM-YQLLTESL 270

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            K  K++E  +++  +   G++P T  F+T++   C  G+ ++A ++   M S GC    
Sbjct: 271 NKEDKIEEVVQVVHKLQDSGISPQTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDE 330

Query: 394 FSY 396
            +Y
Sbjct: 331 LTY 333



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/148 (37%), Positives = 86/148 (58%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C+PN VTY  IID +C+EG VD+A+EL   +  +   P+ V YN+++ G C    W +A 
Sbjct: 12  CEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIERWVDAE 71

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL EM+ +   P+  T NVI++ L + G + + +R LE M   G   N  T++ ++ G 
Sbjct: 72  ELLDEMVRENCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGM 131

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G V+ A EL  +M+S GCK  + +Y
Sbjct: 132 CEQGHVDSALELLSNMQSFGCKPDIVTY 159



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 125/252 (49%), Gaps = 7/252 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N +   + +  H D+ L L   + S G  PD+ TYN L+   C   +      ++ 
Sbjct: 121 VVTYNAVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDAEELMI 180

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++ ++   PD V F ++I  LC +  I++A  +F ++   GC PN  TYST+I GL + G
Sbjct: 181 KMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLAKAG 240

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L  EMA+       +       Y  + + L KE  +++  ++  +++D  I+P
Sbjct: 241 KMEQALELLNEMASKGYNTDKM-------YQLLTESLNKEDKIEEVVQVVHKLQDSGISP 293

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
             V +N+++   C     + A  +L +M+  G  PD +T+ ++++ L   G + EA  L+
Sbjct: 294 QTVLFNTVLLVLCRNGKTDYAIDVLADMVSYGCMPDELTYIILIEGLSYEGYLQEARELV 353

Query: 347 ELMILRGVNPNT 358
             +  R V  N+
Sbjct: 354 SRLCSRDVLSNS 365


>gi|356544378|ref|XP_003540629.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Glycine max]
          Length = 903

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 99/298 (33%), Positives = 157/298 (52%), Gaps = 7/298 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + D M+ +  SP       L+ G L K    D    L  ++   G  P+L+ YN LIN  
Sbjct: 317 LMDEMVELGFSPTEAAVSGLVDG-LRKQGKIDDAYELVVKVGRFGFVPNLFVYNALINSL 375

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G +    ++   +      P+ + ++ LI   C   R+  A + F ++   G    V
Sbjct: 376 CKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETV 435

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             Y++LING C+ G    A +LF EM N     GV  +P   T+T++I G CK+  V KA
Sbjct: 436 YAYNSLINGQCKFGDLSAAESLFIEMTNK----GV--EPTATTFTSLISGYCKDLQVQKA 489

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L+ +M D  I P+V T+ +LI G C  N   EA+ L  E++++ ++P  VT+NV+++ 
Sbjct: 490 FKLYNKMIDNGITPNVYTFTALISGLCSTNKMAEASELFDELVERKIKPTEVTYNVLIEG 549

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            C++GK+D+A  LLE M  +G+ P+T T+  L+ G C TGRV+ AK+    +     K
Sbjct: 550 YCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVK 607



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 155/360 (43%), Gaps = 79/360 (21%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++N+RP+     ++++L     ++   D  +S F R+   G+   +Y YN LIN  CK G
Sbjct: 393 LMNLRPNG---ITYSILIDSFCRSGRLDVAISYFDRMIQDGIGETVYAYNSLINGQCKFG 449

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +S    +   +      P A  FTSLI G C + ++ +A  L+ K+   G  PNV T++
Sbjct: 450 DLSAAESLFIEMTNKGVEPTATTFTSLISGYCKDLQVQKAFKLYNKMIDNGITPNVYTFT 509

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+GLC T     A  LF+E+           KP  VTY  +I+G C++G +DKA EL 
Sbjct: 510 ALISGLCSTNKMAEASELFDELVERK------IKPTEVTYNVLIEGYCRDGKIDKAFELL 563

Query: 277 LQMKDKNINPDVVTY-----------------------------------NSLIHGFCYA 301
             M  K + PD  TY                                   ++L+HG+C  
Sbjct: 564 EDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQE 623

Query: 302 NDWNEA---NC--------------------------------LLIEMMDQGVQPDVVTF 326
               EA   +C                                LL +M DQG++PD V +
Sbjct: 624 GRLMEALSASCEMIQRGINMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIY 683

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D   K G   +A    +LM+     PN  T++ LM+G C  G ++ A  LF  M++
Sbjct: 684 TSMIDTYSKEGSFKKAFECWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQA 743



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 138/273 (50%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L K    D    L+  ++   L P+  TY+ILI+ FC+ GR+      
Sbjct: 363 PNLFVYNALINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISY 422

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+++        A+ SLI G C    +  A +LF ++   G +P   T+++LI+G C+
Sbjct: 423 FDRMIQDGIGETVYAYNSLINGQCKFGDLSAAESLFIEMTNKGVEPTATTFTSLISGYCK 482

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L+ +M + NG       PN  T+T +I GLC    + +A ELF ++ ++ I
Sbjct: 483 DLQVQKAFKLYNKMID-NG-----ITPNVYTFTALISGLCSTNKMAEASELFDELVERKI 536

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  VTYN LI G+C     ++A  LL +M  +G+ PD  T+  ++  LC  G++ +A  
Sbjct: 537 KPTEVTYNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPLISGLCSTGRVSKAKD 596

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++ +  + V  N   +S L+ G+C  GR+  A
Sbjct: 597 FIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEA 629



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/337 (26%), Positives = 162/337 (48%), Gaps = 31/337 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD ++  +  P  +T +N+L     +    D    L + ++  GL PD YTY  L
Sbjct: 523 EASELFDELVERKIKPTEVT-YNVLIEGYCRDGKIDKAFELLEDMHQKGLVPDTYTYRPL 581

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  GRVS     +  + +     + + +++L+ G C E R+MEA +   ++   G 
Sbjct: 582 ISGLCSTGRVSKAKDFIDDLHKQNVKLNEMCYSALLHGYCQEGRLMEALSASCEMIQRGI 641

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANG------------------NGKFGVV-- 248
             +++ ++ LI+G  +        +L ++M +                    G F     
Sbjct: 642 NMDLVCHAVLIDGALKQPDRKTFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFE 701

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C PN VTYT +++GLCK G +D+A  LF +M+  N+ P+ +TY   +    
Sbjct: 702 CWDLMVTEECFPNVVTYTALMNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLT 761

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              +  EA  L   M+ +G+  + VT N+I+   CK G+  EA+++L  M   G+ P+  
Sbjct: 762 KEGNMKEAIGLHHAML-KGLLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCV 820

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+STL+  +C +G V  + +L+ +M + G +  + +Y
Sbjct: 821 TYSTLIYEYCRSGNVGASVKLWDTMLNRGLEPDLVAY 857



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSL 183
           T   L K ++  GL PD   Y  +I+ + K G     F     ++   CF P+ V +T+L
Sbjct: 663 TFFDLLKDMHDQGLRPDNVIYTSMIDTYSKEGSFKKAFECWDLMVTEECF-PNVVTYTAL 721

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           + GLC    +  A  LF +++A    PN ITY   ++ L + G+   A+ L   M  G  
Sbjct: 722 MNGLCKAGEMDRAGLLFKRMQAANVPPNSITYGCFLDNLTKEGNMKEAIGLHHAMLKG-- 779

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                   NTVT+  II G CK G   +A ++  +M +  I PD VTY++LI+ +C + +
Sbjct: 780 -----LLANTVTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGN 834

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
              +  L   M+++G++PD+V +N+++   C NG++D+A  L + M+ RG+ P+
Sbjct: 835 VGASVKLWDTMLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/308 (24%), Positives = 147/308 (47%), Gaps = 10/308 (3%)

Query: 92  CIFDYMLN--MRPSPPPLTSFNLLF-GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           C+F + L+   R        FNLL    +  ++ +D V+ + K + +  L P++ T + L
Sbjct: 138 CVFSHFLDSYKRCKFSSTLGFNLLVQNYVLSSRIFDAVV-IVKLMFANNLLPEVRTLSAL 196

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N   K+ +    + +    + +   PD    +++++ +C     + A      ++A G 
Sbjct: 197 LNGLLKVRKFITVWELFDESVNAGVRPDPYTCSAVVRSMCELKDFLRAKEKIRWMEANGF 256

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             +++TY+ LI+GLC+      A+ +   +  G G        + VTY T++ G C+   
Sbjct: 257 DLSIVTYNVLIHGLCKGDRVSEAVEVKRSLG-GKG-----LAADVVTYCTLVLGFCRLQQ 310

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +   +L  +M +   +P     + L+ G       ++A  L++++   G  P++  +N 
Sbjct: 311 FEAGIQLMDEMVELGFSPTEAAVSGLVDGLRKQGKIDDAYELVVKVGRFGFVPNLFVYNA 370

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK G +D+A  L   M L  + PN  T+S L+D FC +GR++ A   F  M   G
Sbjct: 371 LINSLCKGGDLDKAELLYSNMSLMNLRPNGITYSILIDSFCRSGRLDVAISYFDRMIQDG 430

Query: 389 CKHTVFSY 396
              TV++Y
Sbjct: 431 IGETVYAY 438



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 43/104 (41%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            + N++     K   +     +   +   G+FPD  TY+ LI  +C+ G V     +   
Sbjct: 785 VTHNIIIRGFCKLGRFHEATKVLSEMTENGIFPDCVTYSTLIYEYCRSGNVGASVKLWDT 844

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +L     PD VA+  LI G C    + +A  L   +   G  P+
Sbjct: 845 MLNRGLEPDLVAYNLLIYGCCVNGELDKAFELRDDMLRRGIIPD 888


>gi|357498925|ref|XP_003619751.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494766|gb|AES75969.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 562

 Score =  169 bits (428), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 159/309 (51%), Gaps = 26/309 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M++ R  P  + ++N L             + LF ++ S  + PD+YT+NI
Sbjct: 258 NDAFDLYSEMVSKRIFPD-VNTYNALINGFCIVGKLKDAIGLFNKMTSENINPDVYTFNI 316

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK GRV      L  +++    PD V + SL+   C  + + +A ++F  +   G
Sbjct: 317 LVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRG 376

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              NV +YS +IN  C+      A+ LF+EM +          PN +TY+++IDGLCK G
Sbjct: 377 VTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQ------IFPNVITYSSLIDGLCKSG 430

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A EL  +M D+   PD++T                   L  ++ DQG++P++ T+ 
Sbjct: 431 RISYALELNDEMHDRGQQPDIIT-------------------LTRQLKDQGIRPNMFTYT 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D LCK G++++A  + E ++++G N   +T++ ++ GFC  G  + A  L   M+  
Sbjct: 472 ILIDGLCKGGRLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDN 531

Query: 388 GCKHTVFSY 396
            C     +Y
Sbjct: 532 CCIPNAVTY 540



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 73/232 (31%), Positives = 128/232 (55%), Gaps = 6/232 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L R+      P+ V + ++I  +C +    +A  L++++ +    P+V TY+ LING C
Sbjct: 228 LLRRVDGKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFC 287

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A+ LF +M + N        P+  T+  ++D  CKEG V +AK     M  + 
Sbjct: 288 IVGKLKDAIGLFNKMTSEN------INPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQG 341

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I PDVVTYNSL+  +C  N+ N+A  +   M  +GV  +V +++++++  CK   +D+A 
Sbjct: 342 IKPDVVTYNSLMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAM 401

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           +L + M  + + PN  T+S+L+DG C +GR+++A EL   M   G +  + +
Sbjct: 402 KLFKEMHHKQIFPNVITYSSLIDGLCKSGRISYALELNDEMHDRGQQPDIIT 453



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/151 (41%), Positives = 92/151 (60%)

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G + +PN V Y TIID +CK+   + A +L+ +M  K I PDV TYN+LI+GFC      
Sbjct: 234 GKLLQPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKRIFPDVNTYNALINGFCIVGKLK 293

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A  L  +M  + + PDV TFN+++D  CK G++ EA   L +M+ +G+ P+  T+++LM
Sbjct: 294 DAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNSLM 353

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D +CL   VN AK +F +M   G    V SY
Sbjct: 354 DRYCLVNEVNKAKSIFNTMSHRGVTANVRSY 384



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 100/188 (53%), Gaps = 6/188 (3%)

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PN++ Y+T+I+ +C+      A +L+ EM +          P+  TY  +I+G C  G 
Sbjct: 238 QPNLVMYNTIIDSMCKDKLDNDAFDLYSEMVSKR------IFPDVNTYNALINGFCIVGK 291

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A  LF +M  +NINPDV T+N L+  FC      EA   L  MM QG++PDVVT+N 
Sbjct: 292 LKDAIGLFNKMTSENINPDVYTFNILVDAFCKEGRVKEAKNGLAMMMKQGIKPDVVTYNS 351

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +MD  C   ++++A  +   M  RGV  N  ++S +++ FC    V+ A +LF  M    
Sbjct: 352 LMDRYCLVNEVNKAKSIFNTMSHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQ 411

Query: 389 CKHTVFSY 396
               V +Y
Sbjct: 412 IFPNVITY 419



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 62/207 (29%), Positives = 96/207 (46%), Gaps = 23/207 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A  IF+ M + R     + S++++     K K  D  + LFK ++   +FP++ TY+ 
Sbjct: 363 NKAKSIFNTM-SHRGVTANVRSYSIMINRFCKIKMVDQAMKLFKEMHHKQIFPNVITYSS 421

Query: 148 LINCFCKMGRVSHGF---------------VVLGRILR-SCFTPDAVAFTSLIKGLCAES 191
           LI+  CK GR+S+                 + L R L+     P+   +T LI GLC   
Sbjct: 422 LIDGLCKSGRISYALELNDEMHDRGQQPDIITLTRQLKDQGIRPNMFTYTILIDGLCKGG 481

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           R+ +A  +F  L   G    V TY+ +I+G C  G    A+ L  +M +        C P
Sbjct: 482 RLEDARNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEAMTLLSKMKDN------CCIP 535

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           N VTY  II  L      DKA+  F++
Sbjct: 536 NAVTYEIIIRSLFDNDENDKAENFFVK 562


>gi|326522248|dbj|BAK07586.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 548

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S N+L   L   +  D  L +   +   G+ PD+ TY  +++ +C    +     +
Sbjct: 203 PDLVSCNILLKGLVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQKL 262

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+     PD   +T LI G C   +I +AA +  +++A G +PN +TYS +I   C+
Sbjct: 263 FDDIIAGGRVPDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCK 322

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G +  A NL  EM       G    P+T     ++D +C++G  ++A +++  M  KN+
Sbjct: 323 EGKSAEACNLMREM------LGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNV 376

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD    N+LI+  C +    EA  L  E +++G +P ++T+N ++  LC+NG++ EA +
Sbjct: 377 PPDNTITNTLIYWLCKSGMVREARKLFDE-LEKGYKPSLLTYNSLISGLCENGELQEAGK 435

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M+ R   PN  T+  L+ GFC  G+ +    +F  M + GC  +   Y
Sbjct: 436 VWDDMVERRYEPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLY 487



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 117/224 (52%), Gaps = 7/224 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
            TPD V+   L+KGL     +  A  +  ++  +G  P+V+TY+T+++  C       A 
Sbjct: 201 ITPDLVSCNILLKGLVGVRDLDAALKVLDEMPGWGIVPDVVTYTTVLSAYCAKEDLKGAQ 260

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF+++  G G+      P+   YT +IDG C+ G +  A  +  +M+   + P+ VTY+
Sbjct: 261 KLFDDIIAG-GRV-----PDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYS 314

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            +I   C      EA  L+ EM+  G  PD      ++D +C++GK +EA ++   M+ +
Sbjct: 315 VVIEACCKEGKSAEACNLMREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKK 374

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            V P+ +  +TL+   C +G V  A++LF  +E  G K ++ +Y
Sbjct: 375 NVPPDNTITNTLIYWLCKSGMVREARKLFDELEK-GYKPSLLTY 417



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 120/249 (48%), Gaps = 7/249 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T + +L     +T        +   + + G+ P+  TY+++I   CK G+ +    +
Sbjct: 273 PDVTMYTVLIDGYCRTGKIQDAARIMDEMEAAGVQPNEVTYSVVIEACCKEGKSAEACNL 332

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L +  TPD      ++  +C + +  EA  ++  +      P+    +TLI  LC+
Sbjct: 333 MREMLGAGHTPDTPLAAKVVDVMCQDGKAEEAHQMWRWMVKKNVPPDNTITNTLIYWLCK 392

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    A  LF+E+  G        KP+ +TY ++I GLC+ G + +A +++  M ++  
Sbjct: 393 SGMVREARKLFDELEKGY-------KPSLLTYNSLISGLCENGELQEAGKVWDDMVERRY 445

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TY +LI GFC     +E   +  EM+ +G  P  V + V++D L +    D    
Sbjct: 446 EPNAMTYEALIKGFCKIGKPDEGAAVFTEMVTKGCAPSKVLYQVLVDSLSEPIHDDIVDN 505

Query: 345 LLELMILRG 353
           +++   L G
Sbjct: 506 IVQTAALSG 514


>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
 gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
          Length = 468

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/279 (34%), Positives = 151/279 (54%), Gaps = 9/279 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ +   L K    +    + + + + G  PD++ +N ++  F +   +     V   +
Sbjct: 118 TYSSIIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHM 177

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--KAFGCKPNVITYSTLINGLCRTG 226
           + S + PD V++  LI GL    ++ E+  + +++  +A G  PNVIT+STLI+GLCRTG
Sbjct: 178 VESGYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTG 237

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL +F  M          CKPN  TYTT+I GLC+   V +A+ELF +M    I P
Sbjct: 238 ELEKALEVFGSMLEAG------CKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPP 291

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMD-QGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           D V YNSLI G+C     +EA  L  EM    G+QP +VTFN ++D  CK GK+  A+ L
Sbjct: 292 DAVAYNSLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANEL 351

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +  M  +G+  +T T+  L+ G     +++ A E++  M
Sbjct: 352 VAEMGTKGLAADTCTYRILIAGLSRATKLDEALEVYKQM 390



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 88/310 (28%), Positives = 151/310 (48%), Gaps = 5/310 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +F  M   +   P   ++N L   L  + + +    L   +    +  +++TY+ 
Sbjct: 62  GKALDLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSS 121

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I    K  +    + VL  ++ +   PD  AF  +++G    + + +A  ++  +   G
Sbjct: 122 IIKSLVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESG 181

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+ ++Y  LI+GL + G    +L +  EMA     +     PN +T++T+I GLC+ G
Sbjct: 182 YKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGY----VPNVITFSTLIHGLCRTG 237

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++KA E+F  M +    P+  TY +LI G C A    +A  L  +M    + PD V +N
Sbjct: 238 ELEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYN 297

Query: 328 VIMDELCKNGKMDEASRLL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++   CK G MDEA +L  E+    G+ P   TF+TL+DGFC  G++  A EL   M +
Sbjct: 298 SLIAGYCKRGSMDEAEKLYREMSGGAGLQPTIVTFNTLIDGFCKLGKLGRANELVAEMGT 357

Query: 387 MGCKHTVFSY 396
            G      +Y
Sbjct: 358 KGLAADTCTY 367



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 87/279 (31%), Positives = 137/279 (49%), Gaps = 7/279 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P   S+++L   LAK    D  L +   +   + G  P++ T++ LI+  C+ G +    
Sbjct: 184 PDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKAL 243

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V G +L +   P+   +T+LI GLC   ++++A  LF K+      P+ + Y++LI G 
Sbjct: 244 EVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNSLIAGY 303

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A  L+ EM+ G G      +P  VT+ T+IDG CK G + +A EL  +M  K
Sbjct: 304 CKRGSMDEAEKLYREMSGGAG-----LQPTIVTFNTLIDGFCKLGKLGRANELVAEMGTK 358

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            +  D  TY  LI G   A   +EA  +  +M ++    D V+    +  LCK G +D+A
Sbjct: 359 GLAADTCTYRILIAGLSRATKLDEALEVYKQMREKKFLLDPVSCVSFVGGLCKTGNIDQA 418

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             + E     G  PN  TF  L +     GRV  A++L 
Sbjct: 419 YAVFEATRKSGAVPNPETFRILSESLIKLGRVEDAQKLM 457



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 135/279 (48%), Gaps = 9/279 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ +   LAK       L +F+ + S    P L TYN+LIN  C  G       +   +
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSESCVPSLVTYNVLINSRCNAGEFGKALDLFQSM 71

Query: 169 LRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
            R     PD   + +LI GLC+      A  L ++++      NV TYS++I  L +   
Sbjct: 72  KREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSLVKEAK 131

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              +  + EEM          C P+   +  ++ G  +   ++KA+E++  M +    PD
Sbjct: 132 PEESYKVLEEM------MAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GVQPDVVTFNVIMDELCKNGKMDEASRL 345
            V+Y+ LIHG       +E+  +L EM  +  G  P+V+TF+ ++  LC+ G++++A  +
Sbjct: 186 NVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEV 245

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              M+  G  PN  T++TL+ G C   +V  A+ELF  M
Sbjct: 246 FGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKM 284



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/184 (33%), Positives = 96/184 (52%), Gaps = 7/184 (3%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y  ++  L + G    AL +FE M + +      C P+ VTY  +I+  C  G   KA 
Sbjct: 12  AYDFVVQSLAKAGMLAQALEVFETMKSES------CVPSLVTYNVLINSRCNAGEFGKAL 65

Query: 274 ELFLQMK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           +LF  MK +K + PD  TYN+LI G C + +   A  LL EM D+ +  +V T++ I+  
Sbjct: 66  DLFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKS 125

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           L K  K +E+ ++LE M+  G NP+   F+ +M GF  +  +  A+E++  M   G K  
Sbjct: 126 LVKEAKPEESYKVLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185

Query: 393 VFSY 396
             SY
Sbjct: 186 NVSY 189


>gi|410109869|gb|AFV61014.1| pentatricopeptide repeat-containing protein 11, partial
           [Acantholippia seriphioides]
          Length = 414

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 100 LMKLKYFKLVWGFYQEILECGYPASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPS 159

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 160 VVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFD 219

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  P  VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 220 EML----VXGLV--PXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 273

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   B  +A+ L+ EM  +G +PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 274 GLCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 333

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 334 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTY 373



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 141/263 (53%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   ++++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 158 PSVVSYNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANEL 217

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P  V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 218 FDEMLVXGLVPXGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 277

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L  EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 278 KGBLKQAHVLIXEMSLKG------XKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 331

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G +PD  T+ +I++E CK G +   S+
Sbjct: 332 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSK 391

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 153/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K  +     S+F  +   GL P + +YN L++ + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGNIRVAQSVFDAITKWGLRPSVVSYNTLMSGYIRLGDLDEGFR 181

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC E ++ EA  LF ++   G  P  +T++TLI+G C
Sbjct: 182 LKSAMHASGVQPDVYTYSVLINGLCKEXKMDEANELFDEMLVXGLVPXGVTFTTLIDGHC 241

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGBLKQAHVLIXEMSLKG 295

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 296 XKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 355

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G  P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 356 KMLREMLSVGXKPDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTY 408



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  G  PD  TY  LI
Sbjct: 249 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGBLKQAHVLIXEMSLKGXKPDKITYTTLI 307

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 308 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGXK 367

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 368 PDTRTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVTYNVLMNG 414


>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g52620-like [Brachypodium distachyon]
          Length = 877

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L +    + + SL   +    L P++  YN +I+  CK    S   VV
Sbjct: 327 PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVV 386

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++      PDA+ F++LI GLC E R+ EA  L  +   +   PN+ +Y++LI+G C 
Sbjct: 387 LKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCV 446

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  IVA NL  EM            P+ VT+  +I GL   G V +A  +  +M  + +
Sbjct: 447 RGEVIVASNLLVEMMERGH------TPDVVTFGALIHGLVVAGQVSEALLVREKMAARQL 500

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   YN LI G C       A  L+ EM++Q V PD   +  ++D   +N  +DEA +
Sbjct: 501 LPDANIYNVLISGLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARK 560

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + E M  +G++P+   ++ ++ G+C  G +N A E   +M  +G     F+Y
Sbjct: 561 IFEFMEQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTY 612



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/331 (31%), Positives = 155/331 (46%), Gaps = 41/331 (12%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS- 159
           R  PP +  +N +   L K +     L + K++ + G  PD  T++ LI+  C+ GRV  
Sbjct: 358 RRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQE 417

Query: 160 ------------------------HGFVVLGRILRSC----------FTPDAVAFTSLIK 185
                                   HGF V G ++ +            TPD V F +LI 
Sbjct: 418 AERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTFGALIH 477

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           GL    ++ EA  +  K+ A    P+   Y+ LI+GLC+      A NL EEM   N   
Sbjct: 478 GLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPAARNLIEEMLEQN--- 534

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
                P+   YTT+IDG  +   +D+A+++F  M+ K I+PDVV YN++I G+C     N
Sbjct: 535 ---VHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGYCQFGMMN 591

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           EA   +  M   G  PD  T+  ++    K G +  A  LL  M+ R   PN   +S+L+
Sbjct: 592 EAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLI 651

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +G+C  G  + A+ LF SMES G    V +Y
Sbjct: 652 NGYCKLGDTDAAECLFGSMESQGLFPNVITY 682



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/305 (29%), Positives = 152/305 (49%), Gaps = 41/305 (13%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L L +     G  P+   YN+LI+ +C+ G V  G ++LG +      P  V + +L+  
Sbjct: 279 LKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTVVTYGTLMSW 338

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           L  +  + + A+L ++++     PNV  Y+++I+ LC+      AL + ++M  G     
Sbjct: 339 LGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAGG---- 394

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             C P+ +T++T+I GLC+EG V +A+ L  +     +NP++ +Y SLIHGFC   +   
Sbjct: 395 --CDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIV 452

Query: 307 ANCLLIEMMDQGVQPDVVTF-----------------------------------NVIMD 331
           A+ LL+EMM++G  PDVVTF                                   NV++ 
Sbjct: 453 ASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLIS 512

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LCK   +  A  L+E M+ + V+P+   ++TL+DGF     ++ A+++F  ME  G   
Sbjct: 513 GLCKKKMLPAARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHP 572

Query: 392 TVFSY 396
            V  Y
Sbjct: 573 DVVGY 577



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/269 (30%), Positives = 130/269 (48%), Gaps = 6/269 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + +F  L   L         L + +++ +  L PD   YN+LI+  CK   +  
Sbjct: 463 RGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLISGLCKKKMLPA 522

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  +L     PD   +T+LI G      + EA  +F  ++  G  P+V+ Y+ +I 
Sbjct: 523 ARNLIEEMLEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIHPDVVGYNAMIK 582

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G C+ G    A+     M     K G +  P+  TYTT+I G  K+G +  A  L   M 
Sbjct: 583 GYCQFGMMNEAVECMSTMR----KVGRI--PDEFTYTTLIGGYAKQGNISGALSLLCDMM 636

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            +   P+VV Y+SLI+G+C   D + A CL   M  QG+ P+V+T+ +++  L K  K+ 
Sbjct: 637 KRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQGLFPNVITYTILIGSLFKKDKVV 696

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFC 369
            A+   E M+L   +PN  T  +L+ G C
Sbjct: 697 RAAMYFEYMLLNQCSPNDYTLHSLVTGLC 725



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 69/214 (32%), Positives = 111/214 (51%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +++GLC E  + +   L       GC PN + Y+ LI+G CR G     + L  EM    
Sbjct: 265 MVRGLCLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEM-EAK 323

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G       P  VTY T++  L ++G ++K   L  +M+++ + P+V  YNS+I   C   
Sbjct: 324 GLL-----PTVVTYGTLMSWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCR 378

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             ++A  +L +M   G  PD +TF+ ++  LC+ G++ EA RLL       +NPN S+++
Sbjct: 379 SASQALVVLKQMFAGGCDPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYT 438

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+ GFC+ G V  A  L V M   G    V ++
Sbjct: 439 SLIHGFCVRGEVIVASNLLVEMMERGHTPDVVTF 472



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/304 (26%), Positives = 137/304 (45%), Gaps = 22/304 (7%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + + ML     P       L+ G + + +  D    +F+ +   G+ PD+  YN +I  +
Sbjct: 526 LIEEMLEQNVHPDKYVYTTLIDGFI-RNESLDEARKIFEFMEQKGIHPDVVGYNAMIKGY 584

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G ++     +  + +    PD   +T+LI G   +  I  A +L   +    C+PNV
Sbjct: 585 CQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMMKRRCQPNV 644

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + YS+LING C+ G T  A  LF  M +  G F     PN +TYT +I  L K+  V +A
Sbjct: 645 VAYSSLINGYCKLGDTDAAECLFGSMES-QGLF-----PNVITYTILIGSLFKKDKVVRA 698

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYA-------------NDWNEANCLLI--EMMDQ 317
              F  M     +P+  T +SL+ G C +             N   +   L I   +++ 
Sbjct: 699 AMYFEYMLLNQCSPNDYTLHSLVTGLCNSMASIISSHCSSTVNLHGKGALLDIFRALVND 758

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
              P    +N I+  LC +  + EA  L   M  +G  P+++TF +L+ GFC  G+    
Sbjct: 759 RCDPRNSAYNAIIFSLCIHNMLGEALDLKNKMANKGYKPDSATFLSLLYGFCSVGKSREW 818

Query: 378 KELF 381
           + + 
Sbjct: 819 RTIL 822



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 124/302 (41%), Gaps = 30/302 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  IF++M   +   P +  +N +     +    +  +     +   G  PD +TY  
Sbjct: 556 DEARKIFEFM-EQKGIHPDVVGYNAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTT 614

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  + K G +S    +L  +++    P+ VA++SLI G C       A  LF  +++ G
Sbjct: 615 LIGGYAKQGNISGALSLLCDMMKRRCQPNVVAYSSLINGYCKLGDTDAAECLFGSMESQG 674

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC--- 264
             PNVITY+ LI  L +    + A   FE M          C PN  T  +++ GLC   
Sbjct: 675 LFPNVITYTILIGSLFKKDKVVRAAMYFEYMLLNQ------CSPNDYTLHSLVTGLCNSM 728

Query: 265 ----------------KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                           K   +D    +F  + +   +P    YN++I   C  N   EA 
Sbjct: 729 ASIISSHCSSTVNLHGKGALLD----IFRALVNDRCDPRNSAYNAIIFSLCIHNMLGEAL 784

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L  +M ++G +PD  TF  ++   C  GK  E   +L     R      S +  L D +
Sbjct: 785 DLKNKMANKGYKPDSATFLSLLYGFCSVGKSREWRTILPNEFQRDELEVASRYKILFDQY 844

Query: 369 CL 370
            +
Sbjct: 845 VV 846



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/183 (23%), Positives = 73/183 (39%), Gaps = 4/183 (2%)

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           +S L+  L R G          +M+       V   P       ++      G   KA E
Sbjct: 153 HSALLRLLARAGRFDAVDATLRDMSLAGAAAAV---PTRACLGALVATYADAGMEAKAAE 209

Query: 275 LFLQMKDKNIN-PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +  + ++ +   P     N L+        W++A  L  EM+ +    D  +  V++  L
Sbjct: 210 MCQRAREHHGTLPGATHTNRLLRLLVERRRWDDARKLYDEMLAEESGADDYSTCVMVRGL 269

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           C  G +++  +L+E     G  PN   ++ L+DG+C  G V     L   ME+ G   TV
Sbjct: 270 CLEGLVEKGLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGILLLGEMEAKGLLPTV 329

Query: 394 FSY 396
            +Y
Sbjct: 330 VTY 332


>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
 gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
          Length = 734

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 158/304 (51%), Gaps = 11/304 (3%)

Query: 98  LNMRPSP---PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           +++ P P   P   S+ +L   L   +  D  + L + + S G+  D+ TY  LI   C 
Sbjct: 103 MSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCD 162

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
              V     ++G +  S   P+ V ++SL++G C   R  +   +F ++   G +P+V+ 
Sbjct: 163 AAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVM 222

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ LI+ LC+ G    A  + + M     + G+  +PN VTY  +I+ +CKEG V +A  
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMV----RRGL--EPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDE 332
           +  +M +K + PDVVTYN+LI G     + +EA  LL EM+     V+P+VVTFN ++  
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQG 336

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC  G+M +A ++  +M   G   N  T++ L+ G     +V  A EL   M S+G +  
Sbjct: 337 LCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396

Query: 393 VFSY 396
            F+Y
Sbjct: 397 SFTY 400



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 43/332 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M+  R   P + ++N+L  C+ K       + + K+++  G+ PD+ TYN L
Sbjct: 238 KAHGVMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 149 INCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I     +  +     +L  ++R  +   P+ V F S+I+GLC   R+ +A  +   ++  
Sbjct: 297 IKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEET 356

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC  N++TY+ LI GL R      A+ L +EM +     G+  +P++ TY+ +I G CK 
Sbjct: 357 GCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS----LGL--EPDSFTYSILIKGFCKM 410

Query: 267 GFVDKAKELFLQMKDKNINP----------------------------------DVVTYN 292
             VD+A++L   M+D+ I P                                  DVV Y+
Sbjct: 411 WQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYS 470

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           ++IHG C A D   A  LL  ++D+G+ PD VT++++++   K+G M+ A+ +L+ M   
Sbjct: 471 TMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTAS 530

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           G  P+ + F +L+ G+   G +N   EL   M
Sbjct: 531 GFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 160/307 (52%), Gaps = 15/307 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN---STGLFPDLYTYNILINCFC 153
           +L+  PS     S+N +   L +  H+D   +L + ++        P+  +Y +L+   C
Sbjct: 67  LLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALC 126

Query: 154 KMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              R++   V L R +RS     D V + +LI+GLC  + + +A  L  ++   G +PNV
Sbjct: 127 A-DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 185

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + YS+L+ G C++G       +F EM+          +P+ V YT +ID LCK G   KA
Sbjct: 186 VVYSSLLQGYCKSGRWEDVGKVFVEMSEKG------IEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +   M  + + P+VVTYN LI+  C      EA  +L +M ++GV PDVVT+N ++  
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 333 LCKNGKMDEASRLLELMILRG---VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L    +MDEA  LLE M+ RG   V PN  TF++++ G C  GR+  A ++   ME  GC
Sbjct: 300 LSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 359 MVNLVTY 365



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 4/282 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L     K+  ++ V  +F  ++  G+ PD+  Y  LI+  CK+G+      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++R    P+ V +  LI  +C E  + EA  +  K+   G  P+V+TY+TLI GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L EEM  G      + KPN VT+ ++I GLC  G + +A ++   M++   
Sbjct: 303 VLEMDEAMWLLEEMVRGKN----IVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++VTYN LI G    +   +A  L+ EM   G++PD  T+++++   CK  ++D A  
Sbjct: 359 MVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAED 418

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           LL  M  RG+ P    +  L+   C  G +  A+ LF  M++
Sbjct: 419 LLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN 460



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 38/240 (15%)

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           R++      + L A     + ++Y+T++  LCR GH   A  L   M+    +    C+P
Sbjct: 57  RLLPLGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSL---EPHPACRP 113

Query: 252 NTVTYT-----------------------------------TIIDGLCKEGFVDKAKELF 276
           N V+YT                                   T+I GLC    VDKA EL 
Sbjct: 114 NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M +  I P+VV Y+SL+ G+C +  W +   + +EM ++G++PDVV +  ++D LCK 
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKV 233

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK  +A  ++++M+ RG+ PN  T++ L++  C  G V  A  +   M   G    V +Y
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTY 293



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 88  NEAFCIFDYMLNMRP-SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  + + M+  +    P + +FN +   L           +   +  TG   +L TYN
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYN 366

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI    ++ +V     ++  +      PD+  ++ LIKG C   ++  A  L + ++  
Sbjct: 367 LLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDR 426

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P +  Y  L+  +C  G    A NLF EM N    F +    + V Y+T+I G CK 
Sbjct: 427 GIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN---NFPL----DVVAYSTMIHGACKA 479

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  AKEL   + D+ + PD VTY+ +I+ F  + D   AN +L +M   G  PDV  F
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVF 539

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + ++      G++++   L+  MI + +  ++   STL      +   N  K L  S+
Sbjct: 540 DSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVAS---NEGKALLQSL 594


>gi|410109915|gb|AFV61037.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           brasiliensis]
          Length = 427

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 113 LMKLKYFKLVWGFYKXILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 172

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 173 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 232

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ +M  +++ PD++TYN+LI+
Sbjct: 233 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIY 286

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 287 GLCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXL 346

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 347 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTY 386



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 195 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 254

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++ M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 255 KNGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKG 308

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + +  D V +  ++  LC+ G+  +A 
Sbjct: 309 LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAE 368

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ PN  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 369 KMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 421



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 171 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 230

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 231 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 290

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 291 KGDLKQAHHLIDEMSMKG------LKPDKITYTTLIDGCCKEGDLDTAFEHRKRMIQENI 344

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++P+  T+ +I++E CK G + + S+
Sbjct: 345 XLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPNXRTYTMIINEFCKKGDVWKGSK 404

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 405 LLKEMQRDGHVPSVVTYNVLMNG 427



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/167 (27%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD  TY  LI
Sbjct: 262 AMEIYKRMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSMKGLKPDKITYTTLI 320

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 321 DGCCKEGDLDTAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 380

Query: 210 PN-----------------------------------VITYSTLING 221
           PN                                   V+TY+ L+NG
Sbjct: 381 PNXRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 427


>gi|255660794|gb|ACU25566.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 418

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++  G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM+ +G+ PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMIMKGLXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M ++G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTY 384



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/273 (34%), Positives = 147/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   +  +G+ PD+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQVSGVQPDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++    V+   +L     P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM            P+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG------LXPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM++ G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E CK G +   S+LL+ M   G  P+  T
Sbjct: 386 MIINEFCKKGDVWTGSKLLKEMQRDGYMPSVVT 418



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQVSGVQPDVYTYSVLINGLCKESKMDDANVLFDEMLDKGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMIMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LXPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLNVGLKPEIGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411


>gi|414590917|tpg|DAA41488.1| TPA: hypothetical protein ZEAMMB73_494908 [Zea mays]
          Length = 601

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/294 (32%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+ ++   L  ++  D  ++L + + ++G+  D+ TY  LI   C    +     +
Sbjct: 113 PNAVSYTMVMRGLCASRRTDEAVALLRSMQASGVRADVVTYGTLIRGLCDAAELDGALEL 172

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG +  S   P+ + ++ L++G C   R  + + +F ++   G +P+VI ++  I+ LC+
Sbjct: 173 LGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCK 232

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + + M           +PN VTY  +I+ LCKEG V +A  L  +M DK +
Sbjct: 233 KGRIGKAVKVKDIMVQRG------LEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGV 286

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM--DQGVQPDVVTFNVIMDELCKNGKMDEA 342
            PDVVTYN+LI G     + + A  LL EM+  D  V+PDVVTFN ++  LCK G+M +A
Sbjct: 287 APDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHGLCKIGRMRQA 346

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + E+M  RG   N  T++ L+ GF    +VN A  L   + S G +   F+Y
Sbjct: 347 ISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTY 400



 Score =  148 bits (374), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 169/355 (47%), Gaps = 53/355 (14%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
           F+ + CK    G        +A  + D M+  R   P + ++N+L  CL K       L+
Sbjct: 226 FIDDLCKKGRIG--------KAVKVKDIMVQ-RGLEPNVVTYNVLINCLCKEGSVREALA 276

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKG 186
           L   ++  G+ PD+ TYN LI     +  +     +L  +++  +   PD V F S+I G
Sbjct: 277 LRNEMDDKGVAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLVEPDVVTFNSVIHG 336

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC   R+ +A ++   +   GC  N++TY+ LI G  R     +A+NL  E+ +      
Sbjct: 337 LCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSG---- 392

Query: 247 VVCKPNTVTYTTIIDG-----------------------------------LCKEGFVDK 271
              +P++ TY+ +I+G                                   LC+ G +++
Sbjct: 393 --LEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQLGMMEQ 450

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  LF +M D N   D V Y+++++G C + D   A  LL +M+D+G+ PD VT++++++
Sbjct: 451 AMVLFNEM-DMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGLAPDAVTYSILIN 509

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
              K G ++EA R+L+ M   G  P+ + F +L+ G+   G++N   +L   M +
Sbjct: 510 MFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILDLIHEMRA 564



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 143/292 (48%), Gaps = 8/292 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L      D  L L   +  +G+ P++  Y+ L+  +C+ GR      V  
Sbjct: 150 VVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIVYSCLLRGYCRSGRWQDVSKVFE 209

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    PD + FT  I  LC + RI +A  +   +   G +PNV+TY+ LIN LC+ G
Sbjct: 210 EMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMVQRGLEPNVVTYNVLINCLCKEG 269

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNI 284
               AL L  EM +          P+ VTY T+I GL     +D A  L  +M   D  +
Sbjct: 270 SVREALALRNEMDDKG------VAPDVVTYNTLIAGLSGVLEMDGAMGLLEEMIQGDTLV 323

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVT+NS+IHG C      +A  +   M ++G   ++VT+N ++    +  K++ A  
Sbjct: 324 EPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMN 383

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  +I  G+ P++ T+S L++GF     V+ A+    +M   G +  +F Y
Sbjct: 384 LMSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHY 435



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 84/292 (28%), Positives = 145/292 (49%), Gaps = 5/292 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L     ++  +  V  +F+ ++  G+ PD+  +   I+  CK GR+     V
Sbjct: 183 PNVIVYSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKV 242

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    P+ V +  LI  LC E  + EA AL  ++   G  P+V+TY+TLI GL  
Sbjct: 243 KDIMVQRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTYNTLIAGLSG 302

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L EEM  G+     + +P+ VT+ ++I GLCK G + +A  +   M ++  
Sbjct: 303 VLEMDGAMGLLEEMIQGD----TLVEPDVVTFNSVIHGLCKIGRMRQAISVREMMAERGC 358

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++VTYN LI GF   +  N A  L+ E++  G++PD  T++++++   K  ++D A  
Sbjct: 359 MCNLVTYNYLIGGFLRVHKVNMAMNLMSELISSGLEPDSFTYSILINGFSKLWEVDRAEM 418

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M  RG+      +  L+   C  G +  A  LF  M+ M C     +Y
Sbjct: 419 FLRTMTQRGIRAELFHYIPLLAALCQLGMMEQAMVLFNEMD-MNCGLDAVAY 469



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 69/226 (30%), Positives = 120/226 (53%), Gaps = 12/226 (5%)

Query: 176 DAVAFTSLIKGLCAESRIMEAA----ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           DAV++  ++  LC     +  A    A  ++      +PN ++Y+ ++ GLC +  T  A
Sbjct: 75  DAVSYNIVLAALCRRGGDLRQALSLLADMSREAHPAARPNAVSYTMVMRGLCASRRTDEA 134

Query: 232 LNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           + L   M A+G        + + VTY T+I GLC    +D A EL  +M    ++P+V+ 
Sbjct: 135 VALLRSMQASG-------VRADVVTYGTLIRGLCDAAELDGALELLGEMCGSGVHPNVIV 187

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y+ L+ G+C +  W + + +  EM   GV+PDV+ F   +D+LCK G++ +A ++ ++M+
Sbjct: 188 YSCLLRGYCRSGRWQDVSKVFEEMSRLGVEPDVIMFTGFIDDLCKKGRIGKAVKVKDIMV 247

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RG+ PN  T++ L++  C  G V  A  L   M+  G    V +Y
Sbjct: 248 QRGLEPNVVTYNVLINCLCKEGSVREALALRNEMDDKGVAPDVVTY 293



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 7/261 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L K       +S+ + +   G   +L TYN LI  F ++ +V+    +
Sbjct: 325 PDVVTFNSVIHGLCKIGRMRQAISVREMMAERGCMCNLVTYNYLIGGFLRVHKVNMAMNL 384

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++ S   PD+  ++ LI G      +  A      +   G +  +  Y  L+  LC+
Sbjct: 385 MSELISSGLEPDSFTYSILINGFSKLWEVDRAEMFLRTMTQRGIRAELFHYIPLLAALCQ 444

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ LF EM        + C  + V Y+T++ G CK G +  AK+L   M D+ +
Sbjct: 445 LGMMEQAMVLFNEM-------DMNCGLDAVAYSTMMYGACKSGDIKAAKQLLQDMLDEGL 497

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY+ LI+ F    D  EA  +L +M   G  PDV  F+ ++      G++++   
Sbjct: 498 APDAVTYSILINMFAKLGDLEEAERVLKQMAASGFVPDVAVFDSLIKGYSAEGQINKILD 557

Query: 345 LLELMILRGVNPNTSTFSTLM 365
           L+  M  + V  +     TL+
Sbjct: 558 LIHEMRAKNVAIDPKFICTLV 578


>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
           chloroplastic-like [Vitis vinifera]
          Length = 582

 Score =  169 bits (427), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 89/258 (34%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN +I+ FCK+ R+     VL R+    F PD V +  +I  LC   ++  A  +
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTT 258
             +L    C P VITY+ LI      G    A+ L EEM A G         P+  TY  
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG-------LLPDMYTYNA 247

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           II G+CKEG V++A EL   +  K   PDV++YN L+  F     W+E   L+ EM  +G
Sbjct: 248 IIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 307

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P+ VT+++++  LC+ G++DEA  +L++MI + + P+T ++  L+   C  GR++ A 
Sbjct: 308 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI 367

Query: 379 ELFVSMESMGCKHTVFSY 396
            +   M S GC   + +Y
Sbjct: 368 GIMDYMISNGCLPDIVNY 385



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/280 (31%), Positives = 143/280 (51%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N+L         +D    L   + S G  P+  TY+ILI+  C+ GR+     V
Sbjct: 275 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 334

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++    TPD  ++  LI  LC E R+  A  +   + + GC P+++ Y+T++  LC+
Sbjct: 335 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCK 394

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL +F ++       G+ C PN  +Y T+I  L   G   +A  +   M  K +
Sbjct: 395 NGNANQALEIFNKLR------GMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGV 448

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD +TYNSLI   C      EA  LL +M   G +P V+++N+++  LCK  ++D+A  
Sbjct: 449 DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIG 508

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +   MI +G  PN +T+  L++G    G    A EL  S+
Sbjct: 509 MFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 548



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K    +    +  R+ + G  PD+ TYNI+I   C   ++     V
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L     P  + +T LI+    E  I EA  L  ++ A G  P++ TY+ +I G+C+
Sbjct: 195 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMCK 254

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L   + +        CKP+ ++Y  ++     +G  D+ ++L  +M  +  
Sbjct: 255 EGMVERAAELITSLTSKG------CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGC 308

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTY+ LI   C     +EA  +L  M+++ + PD  +++ ++  LCK G++D A  
Sbjct: 309 EPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAIG 368

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++ MI  G  P+   ++T++   C  G  N A E+F  +  MGC   V SY
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSY 420



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + + ML  R   P + ++N +   + K    +    L   L S G  PD+ +YNI
Sbjct: 224 NEAMKLLEEML-ARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNI 282

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+  F   G+   G  ++  +      P+ V ++ LI  LC   RI EA ++   +    
Sbjct: 283 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE 342

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  LI+ LC+ G   +A+ + + M + NG     C P+ V Y TI+  LCK G
Sbjct: 343 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMIS-NG-----CLPDIVNYNTILAALCKNG 396

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A E+F +++     P+V +YN++I       D + A  ++  M+ +GV PD +T+N
Sbjct: 397 NANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGVDPDEITYN 456

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC++G ++EA  LL+ M   G  P   +++ ++ G C   R++ A  +F  M   
Sbjct: 457 SLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEK 516

Query: 388 GCKHTVFSY 396
           GC+    +Y
Sbjct: 517 GCRPNETTY 525



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 129/254 (50%), Gaps = 6/254 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   ++++L   L +    D  +S+ K +    L PD Y+Y+ LI+  CK GR+  
Sbjct: 306 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL 365

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  ++ +   PD V + +++  LC      +A  +F KL+  GC PNV +Y+T+I+
Sbjct: 366 AIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMIS 425

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            L   G    AL +   M +     GV   P+ +TY ++I  LC++G V++A  L   M+
Sbjct: 426 ALWSCGDRSRALGMVPAMISK----GV--DPDEITYNSLISCLCRDGLVEEAIGLLDDME 479

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P V++YN ++ G C     ++A  +  EM+++G +P+  T+ ++++ +   G   
Sbjct: 480 QSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRT 539

Query: 341 EASRLLELMILRGV 354
           EA  L   +  R V
Sbjct: 540 EAMELANSLFSRDV 553


>gi|225456753|ref|XP_002268934.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580 [Vitis vinifera]
 gi|297733985|emb|CBI15232.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 105/339 (30%), Positives = 170/339 (50%), Gaps = 32/339 (9%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + D +   R   P + ++N L   L K           +++ + G  PD +TYN 
Sbjct: 268 NEAIRLLDGV--GRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYNS 325

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ +CK+G + +   +L       F PD   + SLI GLC +  I  A  +F +    G
Sbjct: 326 IIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEKG 385

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVVCK-- 250
            KPN++  +TL+ GL + G  + AL L  EM+               NG  K G V    
Sbjct: 386 LKPNLVLCNTLVKGLSQQGLILQALKLMNEMSENGCSPDIWTYNLVINGLCKIGCVSDAD 445

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+  T+ T+IDG CK+  +D A E+  +M +  ++PDV+TYNS+++G 
Sbjct: 446 NLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEIVDRMWNHGVSPDVITYNSILNGL 505

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C A  + +       MM++G  P+++T+N++ +  CK  K++EA  L+E M  +G+ P+ 
Sbjct: 506 CKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCKARKVEEALNLIEEMQNKGLTPDV 565

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
             F TLM GFC  G ++ A +LF  + E     HT+ +Y
Sbjct: 566 VNFGTLMKGFCDNGDLDGAYQLFKRVDEQYKFSHTIATY 604



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 153/303 (50%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L + +++D    ++ R+   G+ PD+YT+ I
Sbjct: 93  QEAVDVFERM-DFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPDVYTFTI 151

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +  FC+  R      +L  +        AVA+ ++I G   E+  +EA  LF ++   G
Sbjct: 152 RMKSFCRTSRPHAARRLLNNMPSQGCESSAVAYCTVIGGFYEENHRVEAHELFEEMLGLG 211

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+++ ++ LI+ LCR GH   +    E + N   K GV   PN  T    I G C+  
Sbjct: 212 ICPDIMAFNKLIHTLCRKGHVQES----ERLLNKVLKRGV--SPNLFTVNIFIQGFCQRA 265

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A  L L    + + PDV+TYN+LI G C      EA   L +M+++G +PD  T+N
Sbjct: 266 MLNEAIRL-LDGVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEPDGFTYN 324

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+D  CK G M  A ++L     +G  P+ ST+ +L++G C  G ++ A  +F      
Sbjct: 325 SIIDGYCKLGMMQNADQILRDGAFKGFVPDESTYCSLINGLCQDGDIDRAINVFNEAMEK 384

Query: 388 GCK 390
           G K
Sbjct: 385 GLK 387



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/274 (28%), Positives = 138/274 (50%), Gaps = 7/274 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++NL+   L K        +L     + G  PD++T+N LI+ +CK  ++ +   +
Sbjct: 423 PDIWTYNLVINGLCKIGCVSDADNLVIDAIAKGHLPDVFTFNTLIDGYCKKLKLDNAIEI 482

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + R+     +PD + + S++ GLC   +  +    F  +   GC PN+ITY+ L    C+
Sbjct: 483 VDRMWNHGVSPDVITYNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNILTESFCK 542

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-N 283
                 ALNL EEM N          P+ V + T++ G C  G +D A +LF ++ ++  
Sbjct: 543 ARKVEEALNLIEEMQNKG------LTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQYK 596

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +  + TYN +I+ F    + N A  L  +M + G  PD  T+ V++D  CK G ++   
Sbjct: 597 FSHTIATYNIMINAFAGKLNMNMAEKLFNKMCENGFSPDSYTYRVMIDGFCKTGNINSGY 656

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
             L + I +G+ P+ +TF  +++  CL  RV+ A
Sbjct: 657 SFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEA 690



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 8/238 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  I D M N   SP  +T +N +   L K   Y+ V+  FK +   G  P++ TYNI
Sbjct: 477 DNAIEIVDRMWNHGVSPDVIT-YNSILNGLCKAGKYEDVMGTFKLMMEKGCVPNIITYNI 535

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           L   FCK  +V     ++  +     TPD V F +L+KG C    +  A  LF ++ + +
Sbjct: 536 LTESFCKARKVEEALNLIEEMQNKGLTPDVVNFGTLMKGFCDNGDLDGAYQLFKRVDEQY 595

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
                + TY+ +IN      +  +A  LF +M   NG       P++ TY  +IDG CK 
Sbjct: 596 KFSHTIATYNIMINAFAGKLNMNMAEKLFNKMCE-NG-----FSPDSYTYRVMIDGFCKT 649

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           G ++      L   +K + P + T+  +++  C     +EA  ++  M+ +G+ P+VV
Sbjct: 650 GNINSGYSFLLVKIEKGLIPSLTTFGRVLNCLCLKRRVHEAVGIIHLMVHKGIVPEVV 707



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/245 (26%), Positives = 118/245 (48%), Gaps = 7/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G++     V  R+      P   ++ +++  L       +A  ++ +++  G  P+
Sbjct: 86  YGRKGKIQEAVDVFERMDFFNCEPSVQSYNAIMNILVEYRYFDQAHKVYMRMRDKGIVPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V T++  +   CRT     A  L   M +        C+ + V Y T+I G  +E    +
Sbjct: 146 VYTFTIRMKSFCRTSRPHAARRLLNNMPSQG------CESSAVAYCTVIGGFYEENHRVE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A ELF +M    I PD++ +N LIH  C      E+  LL +++ +GV P++ T N+ + 
Sbjct: 200 AHELFEEMLGLGICPDIMAFNKLIHTLCRKGHVQESERLLNKVLKRGVSPNLFTVNIFIQ 259

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             C+   ++EA RLL+  + RG+ P+  T++TL+ G C   +V  A+     M + G + 
Sbjct: 260 GFCQRAMLNEAIRLLD-GVGRGLTPDVITYNTLICGLCKNFKVVEAEHYLRKMVNEGYEP 318

Query: 392 TVFSY 396
             F+Y
Sbjct: 319 DGFTY 323


>gi|410109905|gb|AFV61032.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           rugosa]
          Length = 414

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 159

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LING C+      A  LF+
Sbjct: 160 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 219

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN V +TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 220 EMLVK----GLV--PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 273

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI      
Sbjct: 274 GLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRL 333

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 334 DEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTY 373



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  +      +
Sbjct: 158 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 217

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 218 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 277

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +N 
Sbjct: 278 KGDLKQAHHLIDEMSXKG------LKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENX 331

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 332 RLDEVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 391

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 392 LLKEMQRDGHVPSVVTYNVLMNG 414



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 181

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI G C ES+  +A  LF ++   G  PN + ++TLI+G C
Sbjct: 182 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 241

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG 295

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ +  + D V +  ++  LC  G+  +A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLDSAFEHXKRMIQENXRLDEVXYTALISGLCXEGRSVDAE 355

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 356 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 408


>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
          Length = 418

 Score =  168 bits (426), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 94/258 (36%), Positives = 141/258 (54%), Gaps = 11/258 (4%)

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           + +D +LS   +  +    P++ TYNILIN  C  GR+   + V   +LR    P+ V F
Sbjct: 131 EKFDGILSGIDKFAT----PNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTF 186

Query: 181 TSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            +LI GLC +SR+ EA+ L   + K F  KPN   Y++L+ GLCR     +A  L +EM 
Sbjct: 187 GTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMV 246

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
               +       ++  Y+T+I  L K G  D+   +  +M++    PD VTYN++I GFC
Sbjct: 247 ANKLRL------DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFC 300

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              D+  A  +L EM+ +G +PDV+++NVI+  LCK GK  EA+ L E M  RG  P+  
Sbjct: 301 NEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVG 360

Query: 360 TFSTLMDGFCLTGRVNHA 377
           ++  L DG C   + N A
Sbjct: 361 SYRILFDGLCEGMQFNEA 378



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/223 (30%), Positives = 109/223 (48%), Gaps = 5/223 (2%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           TP+   +  LI   C   R+ +A  +F ++      PNV+T+ TLI+GLCR      A  
Sbjct: 145 TPNVCTYNILINACCLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASR 204

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L E+M      F V  KPN   Y +++ GLC+   +  A EL  +M    +  D   Y++
Sbjct: 205 LKEDMVK---VFNV--KPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYST 259

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI         +E   +L EM + G +PD VT+N ++   C     + A  +LE M+++G
Sbjct: 260 LIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKG 319

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             P+  +++ ++ G C  G+   A +LF  M   GC   V SY
Sbjct: 320 CKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSY 362



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 118/252 (46%), Gaps = 8/252 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNI 147
           +A+ +FD ML     P  +T F  L   L +    D    L + +     + P+ + Y  
Sbjct: 166 DAWNVFDEMLRKHVCPNVVT-FGTLISGLCRDSRLDEASRLKEDMVKVFNVKPNAFVYAS 224

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   C++  +S  F +   ++ +    D+  +++LI  L    R  E   +  +++  G
Sbjct: 225 LMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGRKDEVFVVLEEMRENG 284

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKP+ +TY+ +I+G C       A  + EEM          CKP+ ++Y  II GLCKEG
Sbjct: 285 CKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKG------CKPDVISYNVIISGLCKEG 338

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A +LF  M  +   PDV +Y  L  G C    +NEA  +L EM+ +G  P   +  
Sbjct: 339 KWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASXT 398

Query: 328 VIMDELCKNGKM 339
             ++ LC   ++
Sbjct: 399 KFVEALCSGREL 410



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/149 (22%), Positives = 63/149 (42%), Gaps = 1/149 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E F + + M      P  +T +N +       K ++    + + +   G  PD+ +YN+
Sbjct: 271 DEVFVVLEEMRENGCKPDTVT-YNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNV 329

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+  CK G+      +   + R   TPD  ++  L  GLC   +  EAA +  ++   G
Sbjct: 330 IISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFKG 389

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFE 236
             P   + +  +  LC      V +  FE
Sbjct: 390 YAPKSASXTKFVEALCSGRELGVVVQSFE 418


>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
          Length = 624

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/304 (31%), Positives = 158/304 (51%), Gaps = 11/304 (3%)

Query: 98  LNMRPSP---PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           +++ P P   P   S+ +L   L   +  D  + L + + S G+  D+ TY  LI   C 
Sbjct: 103 MSLEPHPACRPNAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCD 162

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
              V     ++G +  S   P+ V ++SL++G C   R  +   +F ++   G +P+V+ 
Sbjct: 163 AAEVDKAVELMGEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVM 222

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ LI+ LC+ G    A  + + M     + G+  +PN VTY  +I+ +CKEG V +A  
Sbjct: 223 YTGLIDSLCKVGKAKKAHGVMDMMV----RRGL--EPNVVTYNVLINCMCKEGSVKEAIG 276

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDE 332
           +  +M +K + PDVVTYN+LI G     + +EA  LL EM+     V+P+VVTFN ++  
Sbjct: 277 VLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQG 336

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC  G+M +A ++  +M   G   N  T++ L+ G     +V  A EL   M S+G +  
Sbjct: 337 LCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPD 396

Query: 393 VFSY 396
            F+Y
Sbjct: 397 SFTY 400



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/332 (28%), Positives = 165/332 (49%), Gaps = 43/332 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M+  R   P + ++N+L  C+ K       + + K+++  G+ PD+ TYN L
Sbjct: 238 KAHGVMDMMVR-RGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTL 296

Query: 149 INCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I     +  +     +L  ++R  +   P+ V F S+I+GLC   R+ +A  +   ++  
Sbjct: 297 IKGLSDVLEMDEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEET 356

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC  N++TY+ LI GL R      A+ L +EM +     G+  +P++ TY+ +I G CK 
Sbjct: 357 GCMVNLVTYNLLIGGLLRVHKVRKAMELMDEMTS----LGL--EPDSFTYSILIKGFCKM 410

Query: 267 GFVDKAKELFLQMKDKNINP----------------------------------DVVTYN 292
             VD+A++L   M+D+ I P                                  DVV Y+
Sbjct: 411 WQVDRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPLDVVAYS 470

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           ++IHG C A D   A  LL  ++D+G+ PD VT++++++   K+G M+ A+ +L+ M   
Sbjct: 471 TMIHGACKAGDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTAS 530

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           G  P+ + F +L+ G+   G +N   EL   M
Sbjct: 531 GFLPDVAVFDSLIQGYSTKGEINKVLELIREM 562



 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/307 (32%), Positives = 160/307 (52%), Gaps = 15/307 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN---STGLFPDLYTYNILINCFC 153
           +L+  PS     S+N +   L +  H+D   +L + ++        P+  +Y +L+   C
Sbjct: 67  LLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRALC 126

Query: 154 KMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              R++   V L R +RS     D V + +LI+GLC  + + +A  L  ++   G +PNV
Sbjct: 127 A-DRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPNV 185

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + YS+L+ G C++G       +F EM+          +P+ V YT +ID LCK G   KA
Sbjct: 186 VVYSSLLQGYCKSGRWEDVGKVFVEMSEKG------IEPDVVMYTGLIDSLCKVGKAKKA 239

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +   M  + + P+VVTYN LI+  C      EA  +L +M ++GV PDVVT+N ++  
Sbjct: 240 HGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKG 299

Query: 333 LCKNGKMDEASRLLELMILRG---VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L    +MDEA  LLE M+ RG   V PN  TF++++ G C  GR+  A ++   ME  GC
Sbjct: 300 LSDVLEMDEAMWLLEEMV-RGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 390 KHTVFSY 396
              + +Y
Sbjct: 359 MVNLVTY 365



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 143/282 (50%), Gaps = 4/282 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L     K+  ++ V  +F  ++  G+ PD+  Y  LI+  CK+G+      V
Sbjct: 183 PNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKVGKAKKAHGV 242

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  ++R    P+ V +  LI  +C E  + EA  +  K+   G  P+V+TY+TLI GL  
Sbjct: 243 MDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSD 302

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L EEM  G      + KPN VT+ ++I GLC  G + +A ++   M++   
Sbjct: 303 VLEMDEAMWLLEEMVRGKN----IVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGC 358

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++VTYN LI G    +   +A  L+ EM   G++PD  T+++++   CK  ++D A  
Sbjct: 359 MVNLVTYNLLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAED 418

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           LL  M  RG+ P    +  L+   C  G +  A+ LF  M++
Sbjct: 419 LLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN 460



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/240 (29%), Positives = 114/240 (47%), Gaps = 38/240 (15%)

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           R++      + L A     + ++Y+T++  LCR GH   A  L   M+    +    C+P
Sbjct: 57  RLLPLGEATSLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSL---EPHPACRP 113

Query: 252 NTVTYT-----------------------------------TIIDGLCKEGFVDKAKELF 276
           N V+YT                                   T+I GLC    VDKA EL 
Sbjct: 114 NAVSYTVLMRALCADRLADQAVGLLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELM 173

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M +  I P+VV Y+SL+ G+C +  W +   + +EM ++G++PDVV +  ++D LCK 
Sbjct: 174 GEMCESGIEPNVVVYSSLLQGYCKSGRWEDVGKVFVEMSEKGIEPDVVMYTGLIDSLCKV 233

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK  +A  ++++M+ RG+ PN  T++ L++  C  G V  A  +   M   G    V +Y
Sbjct: 234 GKAKKAHGVMDMMVRRGLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTY 293



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 138/298 (46%), Gaps = 11/298 (3%)

Query: 88  NEAFCIFDYMLNMRP-SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  + + M+  +    P + +FN +   L           +   +  TG   +L TYN
Sbjct: 307 DEAMWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYN 366

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI    ++ +V     ++  +      PD+  ++ LIKG C   ++  A  L + ++  
Sbjct: 367 LLIGGLLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDR 426

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P +  Y  L+  +C  G    A NLF EM N    F +    + V Y+T+I G CK 
Sbjct: 427 GIEPELFHYIPLLVAMCEQGMMERARNLFNEMDN---NFPL----DVVAYSTMIHGACKA 479

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  AKEL   + D+ + PD VTY+ +I+ F  + D   AN +L +M   G  PDV  F
Sbjct: 480 GDLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVF 539

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + ++      G++++   L+  MI + +  ++   STL      +   N  K L  S+
Sbjct: 540 DSLIQGYSTKGEINKVLELIREMITKNIALDSKIISTLSTSLVAS---NEGKALLQSL 594


>gi|410109911|gb|AFV61035.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           alba]
          Length = 413

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 96/280 (34%), Positives = 152/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K +++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 99  LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 158

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 219 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 272

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D N+A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 273 GLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL 332

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ ++ G C  GR   A+++   M S+G K    +Y
Sbjct: 333 DDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTY 372



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 181 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 240

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G +++A  L  +M  K 
Sbjct: 241 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLNQAHGLIDEMSMKG 294

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  I+  LC+ G+  +A 
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAE 354

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 355 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTY 407



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 157 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 216

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 217 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 276

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 277 KGDLNQAHGLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 330

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y ++I G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 331 RLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 390

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 391 LLKEMQRNGHVPSVXTYNVLMNG 413



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K    +    L   ++  GL PD +TY  LI
Sbjct: 248 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 306

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T++I GLC E R ++A  +  ++ + G K
Sbjct: 307 DGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTAIISGLCQEGRPVDAEKMLREMLSVGLK 366

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V TY+ L+NG
Sbjct: 367 PDTGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVXTYNVLMNG 413


>gi|414880311|tpg|DAA57442.1| TPA: hypothetical protein ZEAMMB73_673693 [Zea mays]
          Length = 770

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 161/369 (43%), Gaps = 65/369 (17%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  M +     P + ++ ++   L +    D    +   L  +G+ P + TYN+L++  
Sbjct: 202 VFGEMRDGNAVAPDVYTYTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDAL 261

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ GRV   F + GR++     P  V F  LI GL    R  E  A+  +++ FG  PN 
Sbjct: 262 CRSGRVEEAFQLKGRMVEGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNE 321

Query: 213 ITYSTLINGLCRTGH------------------TIVALNL-----------------FEE 237
           + Y+ LI   CR GH                  T+V  NL                  +E
Sbjct: 322 VIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQILDE 381

Query: 238 MA-------------------NGNGKFGVVC-----------KPNTVTYTTIIDGLCKEG 267
           M                     G G+  VV            KPN    T  I  LCK G
Sbjct: 382 MLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELCKRG 441

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A E++  +  K +  ++ T N+LIHG C  N+  EA  +L  M+D GV+ D +T+N
Sbjct: 442 KHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYN 501

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++   CK  KM+EA +L + MI RG  P+  TF+T +  +C  G+V     L   M+S 
Sbjct: 502 IMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSE 561

Query: 388 GCKHTVFSY 396
           G K  + +Y
Sbjct: 562 GLKPDIVTY 570



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 138/278 (49%), Gaps = 6/278 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N++     K    +  + L   +   G  PDL+T+N  +  +C +G+V     +L ++
Sbjct: 499 TYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQM 558

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 PD V + ++I G C    + +A     +L   G +PN + Y+ LI G  R G  
Sbjct: 559 KSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSI 618

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ + + M + NG      +P  +TY +++  +C  G V++AKE+F Q   KNI   V
Sbjct: 619 SDAIGVLDTMKH-NG-----IQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGV 672

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           + Y  +I GFC     +EA     EM  + ++P+ +T+  +M   CK G  +EA +L + 
Sbjct: 673 IGYTIIIQGFCKIGKIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDE 732

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           M+  G+ P+T +++TL+ G C    ++   E    M S
Sbjct: 733 MVSSGIVPDTVSYNTLISGCCEVDSLDKIVESPAEMSS 770



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/291 (28%), Positives = 139/291 (47%), Gaps = 8/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + + N L   L +  +      + K +  +G+  D  TYNI+I   CK  ++     +  
Sbjct: 462 IATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRITYNIMIQFCCKASKMEEAIQLRD 521

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++  F PD   F + ++  C   ++ +   L  ++K+ G KP+++TY T+I+G C+  
Sbjct: 522 DMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGTIIDGYCKAK 581

Query: 227 HTIVALN-LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
               A   L E + NG        +PN V Y  +I G  + G +  A  +   MK   I 
Sbjct: 582 DVHKANKYLIELIKNG-------LRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNGIQ 634

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P  +TYNSL++  C+A    EA  +  + + + ++  V+ + +I+   CK GK+DEA   
Sbjct: 635 PTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGVIGYTIIIQGFCKIGKIDEAVMY 694

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + M  R + PN  T++TLM  +C  G    A +LF  M S G      SY
Sbjct: 695 FKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSY 745



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 144/344 (41%), Gaps = 65/344 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L G   +  H    L LF  + S G+   + TYN++    CK G + H   +
Sbjct: 319 PNEVIYNQLIGWHCREGHCSEALRLFDEMVSKGIKQTVVTYNLIAKALCKEGEMEHAEQI 378

Query: 165 LGRILRSCFT------------------------------------PDAVAFTSLIKGLC 188
           L  +L +  T                                    P+    T+ I+ LC
Sbjct: 379 LDEMLLAGMTVHCSLFNSVVAWHLRGTGRLDVVLRLIREMVARFLKPNDAVMTACIQELC 438

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              +  EAA ++  +   G   N+ T + LI+GLC+  +   A  + + M +   +F  +
Sbjct: 439 KRGKHEEAAEIWFLVLGKGLGVNIATSNALIHGLCQGNNMKEATKVLKAMVDSGVEFDRI 498

Query: 249 C-----------------------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
                                         KP+  T+ T +   C  G V+    L  QM
Sbjct: 499 TYNIMIQFCCKASKMEEAIQLRDDMIKRGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQM 558

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           K + + PD+VTY ++I G+C A D ++AN  LIE++  G++P+ V +N ++    +NG +
Sbjct: 559 KSEGLKPDIVTYGTIIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSI 618

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            +A  +L+ M   G+ P   T+++LM   C  G V  AKE+F  
Sbjct: 619 SDAIGVLDTMKHNGIQPTPITYNSLMYWMCHAGLVEEAKEIFAQ 662



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 126/254 (49%), Gaps = 7/254 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D M+  R   P L +FN            + +L L  ++ S GL PD+ TY  
Sbjct: 514 EEAIQLRDDMIK-RGFKPDLFTFNTFLRAYCNLGKVEDILHLLDQMKSEGLKPDIVTYGT 572

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ +CK   V      L  ++++   P+AV + +LI G      I +A  +   +K  G
Sbjct: 573 IIDGYCKAKDVHKANKYLIELIKNGLRPNAVIYNALIGGYGRNGSISDAIGVLDTMKHNG 632

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P  ITY++L+  +C  G    A  +F +    N + GV      + YT II G CK G
Sbjct: 633 IQPTPITYNSLMYWMCHAGLVEEAKEIFAQCILKNIELGV------IGYTIIIQGFCKIG 686

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A   F +M  ++I P+ +TY +L++ +C   +  EA  L  EM+  G+ PD V++N
Sbjct: 687 KIDEAVMYFKEMHYRDIRPNKMTYTTLMYAYCKCGNKEEAFKLFDEMVSSGIVPDTVSYN 746

Query: 328 VIMDELCKNGKMDE 341
            ++   C+   +D+
Sbjct: 747 TLISGCCEVDSLDK 760



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/201 (31%), Positives = 100/201 (49%), Gaps = 5/201 (2%)

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           AA  F +L   G  P++ T + L+  L   G   +A  +F EM +GN        P+  T
Sbjct: 164 AADAFLELSTRGASPSIKTCNILVEALGCGGQLDLARKVFGEMRDGNA-----VAPDVYT 218

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YT +I  LC+ G +D A  +  +++   I P VVTYN L+   C +    EA  L   M+
Sbjct: 219 YTVMIKALCRAGEIDAAFVMLAELERSGIQPTVVTYNVLMDALCRSGRVEEAFQLKGRMV 278

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           +  ++P +VTF ++++ L +  +  E   +L+ M   G+ PN   ++ L+   C  G  +
Sbjct: 279 EGRLRPSIVTFGILINGLARGQRFGEVDAVLQEMEGFGITPNEVIYNQLIGWHCREGHCS 338

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A  LF  M S G K TV +Y
Sbjct: 339 EALRLFDEMVSKGIKQTVVTY 359


>gi|147862640|emb|CAN81487.1| hypothetical protein VITISV_033285 [Vitis vinifera]
          Length = 1024

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 156/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +++L    A     +    L   ++ +G+ PD++ YN +I+C  K G++      
Sbjct: 471 PNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 530

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I      PDAV F + I G     ++ EAA  F ++   G  PN   Y+ LING  +
Sbjct: 531 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 590

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+ + AL++F  +       GV+  P+  T +  I GL K G V +A ++F ++K+K +
Sbjct: 591 AGNLMEALSIFRRLH----ALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 644

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY+SLI GFC   +  +A  L  EM  +G+ P++  +N ++D LCK+G +  A +
Sbjct: 645 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 704

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  +G+ P++ T+ST++DG+C +  V  A  LF  M S G +   F Y
Sbjct: 705 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVY 756



 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 158/308 (51%), Gaps = 8/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF  +  +   P   T    + G L K       L +F  L   GL PD++TY+ L
Sbjct: 596 EALSIFRRLHALGVLPDVQTCSAFIHGLL-KNGRVQEALKVFSELKEKGLVPDVFTYSSL 654

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G V   F +   +      P+   + +L+ GLC    I  A  LF  +   G 
Sbjct: 655 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL 714

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+ +TYST+I+G C++ +   A +LF EM +         +P++  Y  ++ G CKEG 
Sbjct: 715 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKG------VQPHSFVYNALVHGCCKEGD 768

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KA  LF +M  K      +++N+LI G+C +    EA+ L  EM+ + + PD VT+  
Sbjct: 769 MEKAMNLFREMLQKGF-ATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTT 827

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D  CK GKM+EA+ L + M  R +  +T T+++LM G+   G+ +    LF  M + G
Sbjct: 828 VIDWHCKAGKMEEANLLFKEMQERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKG 887

Query: 389 CKHTVFSY 396
            K    +Y
Sbjct: 888 VKPDEVTY 895



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 146/289 (50%), Gaps = 6/289 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +  CL+K    +   +    +   GL PD  T+   I  + K G+++     
Sbjct: 506 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 565

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+   +T LI G      +MEA ++F +L A G  P+V T S  I+GL +
Sbjct: 566 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHALGVLPDVQTCSAFIHGLLK 625

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL +F E+       G+V  P+  TY+++I G CK+G V+KA EL  +M  K I
Sbjct: 626 NGRVQEALKVFSELKEK----GLV--PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 679

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++  YN+L+ G C + D   A  L   M ++G++PD VT++ ++D  CK+  + EA  
Sbjct: 680 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 739

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           L   M  +GV P++  ++ L+ G C  G +  A  LF  M   G   T+
Sbjct: 740 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFATTL 788



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 147/281 (52%), Gaps = 6/281 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++L+   + +    D  + L + +   GL P+ YTY I+    C+  R++   +    + 
Sbjct: 266 YSLVIEGMCQVGDIDEAVELKRSMGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQ 325

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           ++   PD  A ++LI G   E  I E   +   + + G   N+ITY+ LI+GLC+ G   
Sbjct: 326 KTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKME 385

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + + M        + CKPN+ T+  +I+G C+E  + +A EL  +M+ +N+ P  V
Sbjct: 386 KAAEILKGMVT------LGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAV 439

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           +Y ++I+G C+  D + AN LL +M   G++P+VV +++++      G+++EA RLL+ M
Sbjct: 440 SYGAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGM 499

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
              GV P+   ++ ++      G++  A    + ++  G K
Sbjct: 500 SCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLK 540



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 144/301 (47%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA   F+ M       P   + + L     +    D VL +   + S G+  +L TYN+
Sbjct: 315 NEAKLTFEEM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 373

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G++     +L  ++     P++  F  LI+G C E  +  A  L  +++   
Sbjct: 374 LIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 433

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ ++Y  +INGLC      +A  L E+M           KPN V Y+ +I     EG
Sbjct: 434 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG------LKPNVVVYSILIMAYASEG 487

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A+ L   M    + PD+  YN++I     A    EA+  L+E+  +G++PD VTF 
Sbjct: 488 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 547

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             +    K GKM EA++  + M+  G+ PN   ++ L++G    G +  A  +F  + ++
Sbjct: 548 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRRLHAL 607

Query: 388 G 388
           G
Sbjct: 608 G 608



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 159/315 (50%), Gaps = 16/315 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CKS   GDI       A  +FD M      P  +T   ++ G   K+++     SLF  +
Sbjct: 694 CKS---GDI-----QRARKLFDGMPEKGLEPDSVTYSTMIDG-YCKSENVAEAFSLFHEM 744

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
            S G+ P  + YN L++  CK G +     +   +L+  F    ++F +LI G C   +I
Sbjct: 745 PSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKGFAT-TLSFNTLIDGYCKSCKI 803

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            EA+ LF ++ A    P+ +TY+T+I+  C+ G    A  LF+EM   N         +T
Sbjct: 804 QEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERN------LIVDT 857

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VTYT+++ G  K G   +   LF +M  K + PD VTY  +I+  C  ++  EA  L  E
Sbjct: 858 VTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDE 917

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           ++ +G+       ++++  LCK   + EAS+LL+ M   G+ P+ +  +TL+  F   G+
Sbjct: 918 VVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACNTLVRSFHEAGK 977

Query: 374 VNHAKELFVSMESMG 388
           ++ A  +F  ++S+G
Sbjct: 978 MDEATRVFEGVKSLG 992



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 133/290 (45%), Gaps = 10/290 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  L G L KT        +   ++  GL P+ + Y+++I   C++G +     +   +
Sbjct: 230 TYTYLVGALCKTGDLRGAKRVLIEMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM 289

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+   +T +  GLC   R+ EA   F +++  G KP+    S LI+G  R G  
Sbjct: 290 GEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDI 349

Query: 229 IVALNLFEEMANGNGKFGVVCKP--NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              L + + M        V C    N +TY  +I GLCK G ++KA E+   M      P
Sbjct: 350 DEVLRIKDVM--------VSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKP 401

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +  T+  LI G+C  ++   A  LL EM  + + P  V++  +++ LC    +  A++LL
Sbjct: 402 NSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLL 461

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E M   G+ PN   +S L+  +   GR+  A+ L   M   G    +F Y
Sbjct: 462 EKMTFSGLKPNVVVYSILIMAYASEGRIEEARRLLDGMSCSGVAPDIFCY 511



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 149/315 (47%), Gaps = 12/315 (3%)

Query: 86  TPNEAFCIFDYML----NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           TP  +  I D +L    N   S P +  F++L     +    D   ++F    +  +   
Sbjct: 135 TPYSSSSILDSVLFWFRNYGGSSPVV--FDILIDSYKRMGMLDEAANVFFVAKNDSILIS 192

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           L   N L+    K G +   + V   +L +    D   +T L+  LC    +  A  +  
Sbjct: 193 LIRCNSLLKDLLKCGMMELFWKVYNGMLDAKMGFDVYTYTYLVGALCKTGDLRGAKRVLI 252

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++   G  PN   YS +I G+C+ G    A+ L   M    G+ G+V  PNT TYT I  
Sbjct: 253 EMDEKGLNPNEFIYSLVIEGMCQVGDIDEAVELKRSM----GEKGLV--PNTYTYTIITA 306

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC+   +++AK  F +M+   + PD    ++LI GF    D +E   +   M+  G+  
Sbjct: 307 GLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPI 366

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +++T+NV++  LCK GKM++A+ +L+ M+  G  PN+ TF  L++G+C    +  A EL 
Sbjct: 367 NLITYNVLIHGLCKFGKMEKAAEILKGMVTLGCKPNSRTFCLLIEGYCREHNMGRALELL 426

Query: 382 VSMESMGCKHTVFSY 396
             ME      +  SY
Sbjct: 427 DEMEKRNLVPSAVSY 441



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 112/242 (46%), Gaps = 6/242 (2%)

Query: 109  SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            SFN L     K+        LF+ + +  + PD  TY  +I+  CK G++    ++   +
Sbjct: 789  SFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEM 848

Query: 169  LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                   D V +TSL+ G     +  E  ALF K+ A G KP+ +TY  +I   C+  + 
Sbjct: 849  QERNLIVDTVTYTSLMYGYNKLGQSSEVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNL 908

Query: 229  IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            + A  L +E+    GK G++ K     +  +I  LCK   + +A +L  +M +  + P +
Sbjct: 909  VEAFKLRDEVV---GK-GMLTK--GTIHDLLITALCKREDLTEASKLLDEMGELGLKPSL 962

Query: 289  VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
               N+L+  F  A   +EA  +   +   G+ PD  T   +++    +   ++A  L++ 
Sbjct: 963  AACNTLVRSFHEAGKMDEATRVFEGVKSLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQ 1022

Query: 349  MI 350
            ++
Sbjct: 1023 LV 1024


>gi|410109909|gb|AFV61034.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           viburnoides]
          Length = 431

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LING C+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN V +TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G +D A    + MI      
Sbjct: 291 GLCKKGDLKQAHHLIDEMSXKGLKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTY 390



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  +      +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGXCKESKXDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNXVXFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +N 
Sbjct: 295 KGDLKQAHHLIDEMSXKG------LKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENX 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDXVXYTALISGLCXEGRSVDAEKMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 151/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRJAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI G C ES+  +A  LF ++   G  PN + ++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGXCKESKXDDANELFDEMLVKGLVPNXVXFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSXKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ +  + D V +  ++  LC  G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDXAFEHXKRMIQENXRLDXVXYTALISGLCXEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425


>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
          Length = 817

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/348 (29%), Positives = 171/348 (49%), Gaps = 37/348 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP L ++N +   L K +  D   +  +++ +  +
Sbjct: 235 EGDV-----NKACDLFKEMVQ-RGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRV 288

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI  +   G+      V   + R    PD V  + L+  LC   +I EA  
Sbjct: 289 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 348

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGVV---- 248
           +F  +   G  P+V +Y+ ++NG    G  +   +LF+ M  G+G       F V+    
Sbjct: 349 VFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTDLFDLML-GDGIAPDFYTFNVLIKAY 407

Query: 249 --------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KP+ VTY T+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 408 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 467

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN LI GFC      +A  L+ E+M+ G+  D+V F+ I++ LCK G++ +A  + +L
Sbjct: 468 YAYNCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 527

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  G++P+   ++ LMDG+CL G++  A  +F +M S G +  V  Y
Sbjct: 528 TVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGY 575



 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 157/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 46  LRPEEAHDLLDE-LQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRA 104

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  +TY IL++C  +  R        G++LR+    + +    L++G C   R
Sbjct: 105 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLEGFCEAKR 164

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +YS L+  LC  G +  A +L   MA G    G VC P
Sbjct: 165 TDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSP 220

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N V Y T+IDG  KEG V+KA +LF +M  + I PD+VTYNS++H  C A   ++A   L
Sbjct: 221 NVVAYNTVIDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFL 280

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++ V P+  T+N ++      G+  EA R+ + M    + P+  T S LM   C  
Sbjct: 281 RQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 340

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 341 GKIKEARDVFDTMAMKGQNPDVFSY 365



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 160/317 (50%), Gaps = 13/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  ++
Sbjct: 90  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 149

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              N L+  FC+  R      ++L R       PD  +++ L+K LC + +  +A  L  
Sbjct: 150 IIANHLLEGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 209

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C PNV+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY ++
Sbjct: 210 MMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDLVTYNSV 263

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + P+  TYN+LI+G+     W EA  +  EM    +
Sbjct: 264 VHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 323

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVVT +++M  LCK GK+ EA  + + M ++G NP+  +++ +++G+   G +    +
Sbjct: 324 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYNIMLNGYATKGCLVDMTD 383

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G     +++
Sbjct: 384 LFDLMLGDGIAPDFYTF 400



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 149/309 (48%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y YN 
Sbjct: 414 DKAMIIFNEMRD-HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNC 472

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G
Sbjct: 473 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 532

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ + Y+ L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 533 LHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNVVGYGTLVNGYCKIG 586

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  + I P  + Y+ +I G   A     A     EM + G+  D+ T+N
Sbjct: 587 RIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGIAMDICTYN 646

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  N  T +T++DG   T RV  AK+LF S+   
Sbjct: 647 IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEAKDLFASISRS 706

Query: 388 GCKHTVFSY 396
               +V +Y
Sbjct: 707 RLVPSVVTY 715



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 162/372 (43%), Gaps = 68/372 (18%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 127 AHRPELALAFFGQLLRTGLRVNIIIANHLLEG-FCEAKRTDEALDILLHRTPELGCVPDV 185

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++Y+IL+   C  G+      +L  +    +  +P+ VA+ ++I G   E  + +A  LF
Sbjct: 186 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACDLF 245

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN------------------GN 242
            ++   G  P+++TY+++++ LC+      A     +M N                    
Sbjct: 246 KEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSST 305

Query: 243 GKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           G++    +           P+ VT + ++  LCK G + +A+++F  M  K  NPDV +Y
Sbjct: 306 GQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSY 365

Query: 292 NSLIHGF---------------------------------CYAN--DWNEANCLLIEMMD 316
           N +++G+                                  YAN    ++A  +  EM D
Sbjct: 366 NIMLNGYATKGCLVDMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRD 425

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            GV+PDVVT+  ++  LC+ GKMD+A      MI +GV P+   ++ L+ GFC  G +  
Sbjct: 426 HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYNCLIQGFCTHGSLLK 485

Query: 377 AKELFVSMESMG 388
           AKEL   + + G
Sbjct: 486 AKELISEIMNNG 497



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 68/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL PD   YN+L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 523 NIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTLVNGY 582

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I YS +I+GL   G T+ A   F EM   +G    
Sbjct: 583 CKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTE-SGIAMD 641

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C     TY  ++ GL K    D+A  LF +++  N+  +++T N++I G        EA
Sbjct: 642 IC-----TYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIDGMFQTRRVEEA 696

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +    + P VVT+++++  L K G ++EA  +   M   G  PN+
Sbjct: 697 KDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNS 747



 Score =  105 bits (261), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 7/284 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  IFD  +N+   P  +  +N+L          +  L +F  + S G+ P++  Y  L
Sbjct: 520 DAQNIFDLTVNVGLHPDAVV-YNMLMDGYCLVGKMEKALRVFDAMVSAGIEPNVVGYGTL 578

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N +CK+GR+  G  +   +L+    P  + ++ +I GL    R + A   F ++   G 
Sbjct: 579 VNGYCKIGRIDEGLSLFREMLQRGIKPSTILYSIIIDGLFEAGRTVPAKMKFHEMTESGI 638

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ TY+ ++ GL +      A+ LF+E+   N       K N +T  T+IDG+ +   
Sbjct: 639 AMDICTYNIVLRGLFKNRCFDEAIFLFKELRAMN------VKINIITLNTMIDGMFQTRR 692

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++AK+LF  +    + P VVTY+ +I          EA  +   M + G +P+    N 
Sbjct: 693 VEEAKDLFASISRSRLVPSVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPNSRLLNH 752

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           ++ EL K  ++  A   L  +  R  +    T   L+D F   G
Sbjct: 753 VVRELLKKNEIVRAGAYLSKIDERNFSLEHLTAMLLVDLFSSKG 796


>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 772

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L     +   +     L + + +   FP L TYN L+   CK  +V+   +    +
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L+S FTPD V+F SL+ G C    I EA  LF +LK     P VITY+TLI+GLC  G+ 
Sbjct: 347 LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYL 406

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL L +EM +  G F     P+  TYT +++G  K G+V  A+  F +M  K + PD 
Sbjct: 407 DAALRLKKEMTD-QGLF-----PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDR 460

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN+ I G     D + A  +  EM+  G  PDV+T+NV +  LC+ G  +EA  LLE 
Sbjct: 461 FAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLEN 520

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  G+ P+  T++++++GF   G +  A+E+F  M S G   +V +Y
Sbjct: 521 MVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY 568



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 13/300 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +FD  L  R   P + ++N L   L    + D  L L K +   GLFPD++TY I
Sbjct: 372 SEAFLLFD-ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT---KLK 204
           L+N   K+G VS        +L     PD  A+ + I G   E +I + +  F+   ++ 
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVG---EMKIADTSVAFSMQEEML 487

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A G  P+VITY+  ++ LC+ G+   A +L E M +     G++  P+ VTYT+II+G  
Sbjct: 488 AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD----GLI--PDHVTYTSIINGFV 541

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G + KA+E+F +M  K + P VVTY  LIH        + A     +M+++ V  +V+
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVI 601

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I++ LC   +MDEA +  + M  +G+ PN  +++ L++  C  G    A  L+  M
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREM 661



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 69  FLKERCKS-SGQGDITAITPNEAFC--IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
           ++ ER  S    G +  +      C  +FD M+      P + + N +   L        
Sbjct: 140 WVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIR-NGLLPDVKNCNRILRVLRDENLLSK 198

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLI 184
             +++  +   G+ P + TYN +++ +CK GRV     +L  +  R C+ P+ V +  L+
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCY-PNDVTYNVLV 257

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            GL  +  + +A  L  ++   G   +  TY+ LING C+ G  + A +L EEM N    
Sbjct: 258 NGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRA- 316

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 P   TY T++ GLCK   V   +  F  M      PD+V++NSL++G+C     
Sbjct: 317 -----FPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCI 371

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  L  E+  + + P V+T+N ++  LC  G +D A RL + M  +G+ P+  T++ L
Sbjct: 372 SEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTIL 431

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++G    G V+ A+  F  M S G K   F+Y
Sbjct: 432 VNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY 463



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+N R + P L+++N L   L K      V   F  +  +   PD+ ++N L
Sbjct: 303 EAFDLVEEMVNRR-AFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSL 361

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +C+ G +S  F++   +      P  + + +LI GLC    +  A  L  ++   G 
Sbjct: 362 LYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGL 421

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK------------------------ 244
            P++ TY+ L+NG  + G+  +A   F EM +   K                        
Sbjct: 422 FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFS 481

Query: 245 -----FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY   +  LC++G  ++A +L   M    + PD VTY S+I+GF 
Sbjct: 482 MQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 +A  +  EM+ +GV P VVT+ V++        +D A      M+ + V  N  
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVI 601

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ +++G C+T R++ A + F  ME  G     FSY
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638



 Score = 47.4 bits (111), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF  F  ML  +  P  + ++N +   L  T+  D     F  +   G+ P+ ++Y ILI
Sbjct: 584 AFMYFSKMLE-KSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILI 642

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
           N  C MG       +   +L     PD+   +  +K L  + ++
Sbjct: 643 NESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ ML+ +   P + ++ +L    A  +  D     F ++    +  ++ TYN +IN  
Sbjct: 552 VFNEMLS-KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C   R+   +     +      P+  ++T LI   C      EA  L+ ++     +P+ 
Sbjct: 611 CMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDS 670

Query: 213 ITYSTLINGLCR 224
            T+S  +  L R
Sbjct: 671 FTHSVFLKNLHR 682


>gi|255660832|gb|ACU25585.1| pentatricopeptide repeat-containing protein [Aloysia virgata]
 gi|410109881|gb|AFV61020.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           virgata]
          Length = 418

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +    +V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEEILDCGYPASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+I G CK   VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDK----GLV--PNGVTFTTLIAGHCKNRRVDLAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 345 DDVAYTALISGLCQEGRYLDAEKVLREMLSVGLKPDTGTY 384



 Score =  155 bits (393), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K         +F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGDIRVAQLVFNAITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDDANGLFDEMLDKGLVPNGVTFTTLIAGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +     +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 253 KNRRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQENIRLDDVAYTALISGLCQEGRYLDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V S
Sbjct: 367 KVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDGHVPSVVS 418



 Score = 44.3 bits (103), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 52/127 (40%), Gaps = 1/127 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  + D M      P  +T   L+ GC  K    +T     KR+    +  D   Y  
Sbjct: 293 KQAHDLIDEMSMKGLKPDKITYTTLIDGC-CKEGDLETAFEHRKRMIQENIRLDDVAYTA 351

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ GR      VL  +L     PD   +T +I   C +  +   + L  +++  G
Sbjct: 352 LISGLCQEGRYLDAEKVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQRDG 411

Query: 208 CKPNVIT 214
             P+V++
Sbjct: 412 HVPSVVS 418


>gi|225447872|ref|XP_002269015.1| PREDICTED: pentatricopeptide repeat-containing protein At2g15630,
           mitochondrial-like [Vitis vinifera]
          Length = 656

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 156/336 (46%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ ++  M  +R S    T FN++   L K             +   G  P++ +YN +I
Sbjct: 233 AWVLYAEMFRLRISSTVYT-FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTII 291

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +   G +     +L  +      PD+  + SLI G+C E R+ EA+ LF K+   G  
Sbjct: 292 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 351

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANG------------------NGKFGVVCK- 250
           PN +TY+TLI+G C  G    A +  +EM                      G+ G     
Sbjct: 352 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 411

Query: 251 ----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     P+ +TY  +I+G  + G   KA +L  +M  K I P  VTY SLI+    
Sbjct: 412 IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 471

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
            N   EA+ L  +++DQGV PDV+ FN ++D  C NG ++ A  LL+ M  + V P+  T
Sbjct: 472 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 531

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           F+TLM G C  G+V  A+ L   M+  G K    SY
Sbjct: 532 FNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISY 567



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/264 (32%), Positives = 144/264 (54%), Gaps = 6/264 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++++NLL   L           + K +   G+ PD  TYNILIN + + G     F +
Sbjct: 387 PSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDL 446

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P  V +TSLI  L   +R+ EA  LF K+   G  P+VI ++ +++G C 
Sbjct: 447 HNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCA 506

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  L +EM   +        P+ VT+ T++ G C+EG V++A+ L  +MK + I
Sbjct: 507 NGNVERAFMLLKEMDRKS------VPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGI 560

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD ++YN+LI G+    D  +A  +  EM+  G  P ++T+N ++  LCKN + D A  
Sbjct: 561 KPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEE 620

Query: 345 LLELMILRGVNPNTSTFSTLMDGF 368
           LL+ M+ +G++P+ ST+ +L++G 
Sbjct: 621 LLKEMVNKGISPDDSTYLSLIEGM 644



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 161/320 (50%), Gaps = 12/320 (3%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           S +G+I       A  I D M  ++   P   ++  L   + K    +    LF ++   
Sbjct: 295 SSRGNIEG-----ARRILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 348

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P+  TYN LI+ +C  G +   F     +++    P    +  L+  L  E R+ EA
Sbjct: 349 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 408

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +  +++  G  P+ ITY+ LING  R G+   A +L  EM +         +P  VTY
Sbjct: 409 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKG------IEPTHVTY 462

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T++I  L +   + +A +LF ++ D+ ++PDV+ +N+++ G C   +   A  LL EM  
Sbjct: 463 TSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDR 522

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + V PD VTFN +M   C+ GK++EA  LL+ M  RG+ P+  +++TL+ G+   G +  
Sbjct: 523 KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKD 582

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  +   M S+G   T+ +Y
Sbjct: 583 AFRVRDEMLSIGFNPTLLTY 602



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 6/253 (2%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            +++L+   C++ R    F     +      P       ++      +R+  A  L+ ++
Sbjct: 181 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 240

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                   V T++ ++N LC+ G    A      M       G+  KPN V+Y TII G 
Sbjct: 241 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFME------GLGFKPNVVSYNTIIHGY 294

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
              G ++ A+ +   M+ K I PD  TY SLI G C      EA+ L  +M++ G+ P+ 
Sbjct: 295 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 354

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT+N ++D  C  G ++ A    + M+ +G+ P+ ST++ L+    + GR+  A ++   
Sbjct: 355 VTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE 414

Query: 384 MESMGCKHTVFSY 396
           M   G      +Y
Sbjct: 415 MRKKGIIPDAITY 427



 Score = 58.2 bits (139), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 58/133 (43%), Gaps = 1/133 (0%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   M + +  PP   +FN L     +    +    L   +   G+ PD  +YN LI
Sbjct: 513 AFMLLKEM-DRKSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLI 571

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + + + G +   F V   +L   F P  + + +LIK LC       A  L  ++   G  
Sbjct: 572 SGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNALIKCLCKNQEGDLAEELLKEMVNKGIS 631

Query: 210 PNVITYSTLINGL 222
           P+  TY +LI G+
Sbjct: 632 PDDSTYLSLIEGM 644


>gi|115458970|ref|NP_001053085.1| Os04g0477200 [Oryza sativa Japonica Group]
 gi|113564656|dbj|BAF14999.1| Os04g0477200, partial [Oryza sativa Japonica Group]
          Length = 528

 Score =  168 bits (426), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++NLL   L           L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 252 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 311

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R       V +T+LI  L  + ++ E   LF +    G +P+++ Y+ LIN    +G
Sbjct: 312 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 371

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  +  EM            P+ VTY T++ GLC  G VD+A++L  +M ++ I P
Sbjct: 372 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 425

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTYN+LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 426 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 485

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
           + M+  G+ P+ ST+ +L++G 
Sbjct: 486 KEMVENGITPDDSTYISLIEGL 507



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD ML      P    +N L G        DT L    R+   G+   + TYN+
Sbjct: 198 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 257

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++     GR +  + ++  +      PD   +  LI G C E  + +A  +F  +   G
Sbjct: 258 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 317

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  V+TY+ LI  L + G       LF+E      + G+  +P+ V Y  +I+     G
Sbjct: 318 VRATVVTYTALIYALSKKGQVQETDKLFDEAV----RRGI--RPDLVLYNALINSHSTSG 371

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+  +M+ K I PD VTYN+L+ G C     +EA  L+ EM ++G+QPD+VT+N
Sbjct: 372 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 431

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++      G + +A R+   M+ +G NP   T++ L+ G C  G+ + A+ +   M   
Sbjct: 432 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 491

Query: 388 G 388
           G
Sbjct: 492 G 492



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 9/302 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKM 155
           +L   P P  +T +N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 136 LLRQMPRPNAVT-YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 194

Query: 156 GRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 195 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 254

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ L++ L   G    A  L EEM  G G       P+  TY  +I+G CKEG V KA E
Sbjct: 255 YNLLVHALFMDGRGTEAYELVEEMG-GKG-----LAPDVFTYNILINGHCKEGNVKKALE 308

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  M  + +   VVTY +LI+         E + L  E + +G++PD+V +N +++   
Sbjct: 309 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 368

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            +G +D A  ++  M  + + P+  T++TLM G CL GRV+ A++L   M   G +  + 
Sbjct: 369 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLV 428

Query: 395 SY 396
           +Y
Sbjct: 429 TY 430



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 27/210 (12%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGN--------------GKFGVV----------- 248
           T++ ++  LC  G    AL L  +M   N              G+               
Sbjct: 116 TFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG 175

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNE 306
              PN  TY T+I G CK G VD+A ++F +M  K  + P+ V YN+LI G+C     + 
Sbjct: 176 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 235

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A      M+++GV   V T+N+++  L  +G+  EA  L+E M  +G+ P+  T++ L++
Sbjct: 236 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 295

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G V  A E+F +M   G + TV +Y
Sbjct: 296 GHCKEGNVKKALEIFENMSRRGVRATVVTY 325



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M   R   P L ++N L    +        L +   + + G  P L TYN 
Sbjct: 409 DEARKLIDEMTE-RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 467

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           LI   CK G+      ++  ++ +  TPD   + SLI+GL  E
Sbjct: 468 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 510


>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
          Length = 814

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 158/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 43  LRPEEAHDLLDE-LQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRA 101

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  +TY IL++C  +  R        G++LR+    + +    L+KG C   R
Sbjct: 102 QGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNIIIANHLLKGFCEAKR 161

Query: 193 IMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +YS L+  LC  G +  A +L   MA G    G VC P
Sbjct: 162 TDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLRMMAEG----GAVCSP 217

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V Y+T+IDG  KEG V+KA +LF +M  + I PD VTY+S++H  C A   ++A   L
Sbjct: 218 DVVAYSTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++GV P+  T+N ++      G+  EA R+ + M    + P+  T S LM   C  
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKY 337

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 338 GKIKEARDVFDTMAMKGQNPNVFSY 362



 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 168/342 (49%), Gaps = 37/342 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP   +++ +   L K +  D   +  +++ + G+
Sbjct: 232 EGDV-----NKACDLFKEMVQ-RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI  +   G+      V   + R    PD V  + L+  LC   +I EA  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARD 345

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGVV---- 248
           +F  +   G  PNV +Y+ ++NG    G  +   +LF+ M  G+G       F V+    
Sbjct: 346 VFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLML-GDGIAPDIYTFNVLIKAY 404

Query: 249 --------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                KP+ VTY T+I  LC+ G +D A E F QM D+ + PD 
Sbjct: 405 ANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDK 464

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             Y+ LI GFC      +A  L+ E+M+ G+  D+V F+ I++ LCK G++ +A  + +L
Sbjct: 465 YAYHCLIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDL 524

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +  G++P    +S LMDG+CL G++  A  +F +M S G +
Sbjct: 525 TVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIE 566



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 159/317 (50%), Gaps = 13/317 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  ++
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSHTYAILMDCCTRAHRPELALAFFGQLLRTGLRVNI 146

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              N L+  FC+  R      ++L R       PD  +++ L+K LC + +  +A  L  
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVFSYSILLKSLCDQGKSGQADDLLR 206

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C P+V+ YST+I+G  + G    A +LF+EM            P+ VTY+++
Sbjct: 207 MMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLFKEMVQRG------IPPDFVTYSSV 260

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + P+  TYN+LI+G+     W EA  +  EM    +
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHSI 320

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            PDVVT +++M  LCK GK+ EA  + + M ++G NPN  +++ +++G+   G +    +
Sbjct: 321 LPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTD 380

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   G    ++++
Sbjct: 381 LFDLMLGDGIAPDIYTF 397



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/309 (29%), Positives = 146/309 (47%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IF+ M +     P + ++  +   L +    D  +  F ++   G+ PD Y Y+ 
Sbjct: 411 DKAMIIFNEMRD-HGVKPDVVTYRTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHC 469

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI  FC  G +     ++  I+ +    D V F+S+I  LC   R+M+A  +F      G
Sbjct: 470 LIQGFCTHGSLLKAKELISEIMNNGMHLDIVFFSSIINNLCKLGRVMDAQNIFDLTVNVG 529

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  + YS L++G C  G    AL +F+ M +         +PN V Y T+++G CK G
Sbjct: 530 LHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAG------IEPNDVVYGTLVNGYCKIG 583

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+   LF +M  K I P  + YN +I G   A     A     EM + G+  +  T+N
Sbjct: 584 RIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESGIAMNKCTYN 643

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  L KN   DEA  L + +    V  N  T +T++ G   T RV  AK+LF S+   
Sbjct: 644 IVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEAKDLFASISRS 703

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 704 GLVPCVVTY 712



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 148/316 (46%), Gaps = 10/316 (3%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDL 142
           A  P  A   F  +L        + + +LL G   + K  D  L  L  R    G  PD+
Sbjct: 124 AHRPELALAFFGQLLRTGLRVNIIIANHLLKG-FCEAKRTDEALDILLHRTPELGCVPDV 182

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++Y+IL+   C  G+      +L  +    +  +PD VA++++I G   E  + +A  LF
Sbjct: 183 FSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACDLF 242

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   G  P+ +TYS++++ LC+      A     +M N     GV+  PN  TY  +I
Sbjct: 243 KEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNK----GVL--PNNWTYNNLI 296

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G    G   +A  +F +M+  +I PDVVT + L+   C      EA  +   M  +G  
Sbjct: 297 YGYSSTGQWKEAVRVFKEMRRHSILPDVVTLSMLMGSLCKYGKIKEARDVFDTMAMKGQN 356

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+V ++ ++++     G + + + L +LM+  G+ P+  TF+ L+  +   G ++ A  +
Sbjct: 357 PNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMII 416

Query: 381 FVSMESMGCKHTVFSY 396
           F  M   G K  V +Y
Sbjct: 417 FNEMRDHGVKPDVVTY 432



 Score =  108 bits (269), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 65/231 (28%), Positives = 116/231 (50%), Gaps = 6/231 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F    + GL P    Y++L++ +C +G++     V   ++ +   P+ V + +L+ G 
Sbjct: 520 NIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGY 579

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   RI E  +LF ++   G KP+ I Y+ +I+GL   G T+ A   F EM       G+
Sbjct: 580 CKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTES----GI 635

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               N  TY  ++ GL K    D+A  LF +++  N+  +++T N++I G        EA
Sbjct: 636 AM--NKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKINIITLNTMIAGMFQTRRVEEA 693

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             L   +   G+ P VVT+++++  L K G ++EA  +   M   G  P++
Sbjct: 694 KDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDS 744



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/285 (27%), Positives = 128/285 (44%), Gaps = 9/285 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  IFD  +N+   P  +    L+ G CL      +  L +F  + S G+ P+   Y  
Sbjct: 517 DAQNIFDLTVNVGLHPTAVVYSMLMDGYCL--VGKMEKALRVFDAMVSAGIEPNDVVYGT 574

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N +CK+GR+  G  +   +L+    P  + +  +I GL    R + A   F ++   G
Sbjct: 575 LVNGYCKIGRIDEGLSLFREMLQKGIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTESG 634

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N  TY+ ++ GL +      A+ LF+E+   N K       N +T  T+I G+ +  
Sbjct: 635 IAMNKCTYNIVLRGLFKNRCFDEAIFLFKELRAMNVKI------NIITLNTMIAGMFQTR 688

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++AK+LF  +    + P VVTY+ +I          EA  +   M + G +PD    N
Sbjct: 689 RVEEAKDLFASISRSGLVPCVVTYSIMITNLIKEGLVEEAEDMFSSMQNAGCEPDSRLLN 748

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            ++ EL K  ++  A   L  +  R  +    T   L+D F   G
Sbjct: 749 HVVRELLKKNEIVRAGAYLSKIDERNFSLEHLTTMLLVDLFSSKG 793


>gi|410109897|gb|AFV61028.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           macropoda]
          Length = 412

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 157/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAHHLIDEMSMKE 293

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 294 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAE 353

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P++ T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 354 KMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 406



 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 146/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 156 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIYGLCK 275

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 276 KGDLKQAHHLIDEMSMKE------LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENI 329

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM++ G++PD  T+ +I++E CK G + + S+
Sbjct: 330 RLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDSRTYTMIINEFCKKGDVWKGSK 389

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 390 LLKEMQRDGHVPSVVTYNVLMNG 412



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 150/274 (54%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 158 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 217

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 218 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLSPDLITYNTLIY 271

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  + ++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 272 GLCKKGDLKQAHHLIDEMSMKELKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 331

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M ++G K
Sbjct: 332 DEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 365



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+   SP  +T   L++G L K         L   ++   L PD  TY  LI
Sbjct: 247 AMEIYKQMLSQSLSPDLITYNTLIYG-LCKKGDLKQAHHLIDEMSMKELKPDKITYTTLI 305

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++   G K
Sbjct: 306 DGCCKEGDLDSAFEHRKRMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 365

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 366 PDSRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 412



 Score = 46.2 bits (108), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 37/195 (18%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC       A +L + + +  GK      F  +       + +   ++ +I 
Sbjct: 2   SYCTMIHFLCTQQMLSEAKSLIQVVVSRKGKGSASAVFAAIVETKGTQRSDLYVFSGLIT 61

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E +   ++        T   ++        +        E+++ G   
Sbjct: 62  AYLESGFLRDAIECYRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 121

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK+G +  A  + + +   G+ P+  +++TLM+G+   G ++    L 
Sbjct: 122 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 181

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 182 SAMLASGVQPDVYTY 196


>gi|255660838|gb|ACU25588.1| pentatricopeptide repeat-containing protein [Neosparton
           ephedroides]
          Length = 418

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 147/272 (54%), Gaps = 6/272 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K K++ +V   +K +   G    LY +NIL++ FCK G +     V   I +    P  V
Sbjct: 113 KLKYFKSVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVV 172

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           +F +L+ G      + E   L + +   G +P+V TYS LINGLC+      A  LF+EM
Sbjct: 173 SFNTLMNGYIRLGDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEM 232

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
             GNG       PN VT+TT+IDG CK G +D A E + +M  +  +PD++TYN+LI+G 
Sbjct: 233 I-GNG-----LVPNGVTFTTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGL 286

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A +  + MI   +  + 
Sbjct: 287 CKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDD 346

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             ++ L+ G C  G+   A+++   M S+G K
Sbjct: 347 VAYTALISGLCREGQSVGAEKMLREMLSVGLK 378



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 149/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +TG   +A+  ++EM            P+ +TY T+I GLCKEG + +A++L  +M  K 
Sbjct: 253 KTGSIDLAMEAYKEMLRQG------FSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+   A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFKYKKRMIKENIRLDDVAYTALISGLCREGQSVGAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDG 411



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    +    LF  +   GL P+  T+  LI+  CK G +      
Sbjct: 204 PDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMEA 263

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR  F+PD + + +LI GLC E  + +A  L  ++   G KP+ ITY+TLI+G C+
Sbjct: 264 YKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    + M   N       + + V YT +I GLC+EG    A+++  +M    +
Sbjct: 324 EGDLETAFKYKKRMIKEN------IRLDDVAYTALISGLCREGQSVGAEKMLREMLSVGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            PD  TY  +I+ FC   D    + LL EM   G  P VVT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKMGSKLLKEMQRDGHVPCVVT 418



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L++  C+ G   +A ++F+E+     K+G+  +P+ V++ T+++G  + 
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDEIT----KWGL--RPSVVSFNTLMNGYIRL 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M    I PDV TY+ LI+G C  +  N+AN L  EM+  G+ P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHGSGIQPDVYTYSVLINGLCKESKMNDANELFDEMIGNGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CK G +D A    + M+ +G +P+  T++TL+ G C  G +  A++L   M  
Sbjct: 245 TTLIDGHCKTGSIDLAMEAYKEMLRQGFSPDLITYNTLIYGLCKEGDLKQAQDLIDEMSM 304

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 305 KGLKPDKITY 314



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC       A NL + + +  GK      F  +       + +   ++ +I 
Sbjct: 15  SYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGLIT 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E F   ++        T   ++  F     +        E+++ G   
Sbjct: 75  AYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKSVWGFYKEILECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +   G+ P+  +F+TLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M   G +  V++Y
Sbjct: 195 SAMHGSGIQPDVYTY 209


>gi|224111362|ref|XP_002315826.1| predicted protein [Populus trichocarpa]
 gi|222864866|gb|EEF01997.1| predicted protein [Populus trichocarpa]
          Length = 636

 Score =  168 bits (425), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S N     L+K    D     F+ +   G+ P ++TYNI+I   CK G +     +
Sbjct: 95  PKARSCNAFLHRLSKAGEGDLSRDFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSL 154

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ +   TPD V + +LI G      + E+  LF ++K  GC+P+VITY+ LIN  C+
Sbjct: 155 FEQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCK 214

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A   F EM + +       KPN ++Y+T+ID LCKEG +  A + F+ M    +
Sbjct: 215 FKGMLRAFEFFREMKDKD------LKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGL 268

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  TY+SLI   C A +  EA  L  EM+ + V  ++VT+  ++D LC+ G M+EA  
Sbjct: 269 LPNEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEE 328

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M   GV PN   ++ L+ G      ++ A ELF  M     K  +  +
Sbjct: 329 LFRAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLW 380



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 172/355 (48%), Gaps = 41/355 (11%)

Query: 73  RCKSSGQGDITAITPNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLF 130
           R   +G+GD++           D+  +M  +   P + ++N++ G + K     T  SLF
Sbjct: 106 RLSKAGEGDLSR----------DFFRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLF 155

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           +++   GL PD+ TYN LI+ + K+G +     +   +      PD + + +LI   C  
Sbjct: 156 EQMKKMGLTPDIVTYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKF 215

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA----------- 239
             ++ A   F ++K    KPNVI+YSTLI+ LC+ G   +A+  F +M            
Sbjct: 216 KGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTY 275

Query: 240 ----NGNGKFGVVCKP--------------NTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
               + N K G + +               N VTYTT++DGLC+EG +++A+ELF  M  
Sbjct: 276 SSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGK 335

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P++  Y +LIHG       ++A  L  EM ++ ++PD++ +  I+  LC   K++E
Sbjct: 336 AGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEE 395

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              ++  M   G+  N   ++TLMD +   G    A  L   M  +G + TV ++
Sbjct: 396 CKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTF 450



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 148/306 (48%), Gaps = 15/306 (4%)

Query: 90  AFCIFDYMLNM---------RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           +FC F  ML           +   P + S++ L   L K       +  F  +   GL P
Sbjct: 211 SFCKFKGMLRAFEFFREMKDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLP 270

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           + +TY+ LI+  CK G +   F++   +L+     + V +T+L+ GLC E  + EA  LF
Sbjct: 271 NEFTYSSLIDANCKAGNLGEAFMLADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELF 330

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +   G  PN+  Y+ LI+G  +      A+ LF EM   +       KP+ + + TI+
Sbjct: 331 RAMGKAGVTPNLQAYTALIHGHIKVRSMDKAMELFNEMREKD------IKPDILLWGTIV 384

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC E  +++ K +  +MK+  I  + V Y +L+  +  A +  EA  LL EM D G +
Sbjct: 385 WGLCSESKLEECKIIMTEMKESGIGANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTE 444

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             VVTF  ++D LCK G + EA      M    + PN + ++ L+DG C    +  AK+L
Sbjct: 445 VTVVTFCALIDGLCKRGLVQEAIYYFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKL 504

Query: 381 FVSMES 386
           F  M+ 
Sbjct: 505 FDEMQD 510



 Score =  144 bits (364), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 148/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    F+ LF  L +    +     F R+    + P   + N  ++   K G        
Sbjct: 60  PGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGDLSRDF 119

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++ +   P    +  +I  +C E  ++ A +LF ++K  G  P+++TY+TLI+G  +
Sbjct: 120 FRDMVGAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIVTYNTLIDGYGK 179

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    ++ LFEEM     KF + C+P+ +TY  +I+  CK   + +A E F +MKDK++
Sbjct: 180 IGLLDESVCLFEEM-----KF-MGCEPDVITYNALINSFCKFKGMLRAFEFFREMKDKDL 233

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V++Y++LI   C       A    ++M   G+ P+  T++ ++D  CK G + EA  
Sbjct: 234 KPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTYSSLIDANCKAGNLGEAFM 293

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M+   V+ N  T++TL+DG C  G +N A+ELF +M   G    + +Y
Sbjct: 294 LADEMLQEHVDLNIVTYTTLLDGLCEEGMMNEAEELFRAMGKAGVTPNLQAY 345



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/332 (27%), Positives = 157/332 (47%), Gaps = 30/332 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + D ML        +T   LL G L +    +    LF+ +   G+ P+L  Y  L
Sbjct: 290 EAFMLADEMLQEHVDLNIVTYTTLLDG-LCEEGMMNEAEELFRAMGKAGVTPNLQAYTAL 348

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+   K+  +     +   +      PD + + +++ GLC+ES++ E   + T++K  G 
Sbjct: 349 IHGHIKVRSMDKAMELFNEMREKDIKPDILLWGTIVWGLCSESKLEECKIIMTEMKESGI 408

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK--------- 250
             N + Y+TL++   + G+   A+NL EEM +   +  VV         CK         
Sbjct: 409 GANPVIYTTLMDAYFKAGNRTEAINLLEEMRDLGTEVTVVTFCALIDGLCKRGLVQEAIY 468

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      PN   YT +IDGLCK   +  AK+LF +M+DKN+ PD + Y ++I G  
Sbjct: 469 YFGRMPDHDLQPNVAVYTALIDGLCKNNCIGDAKKLFDEMQDKNMIPDKIAYTAMIDGNL 528

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              ++ EA  +  +MM+ G++ D+  +  ++  L + G++ +A + L  MI +G+ P+ +
Sbjct: 529 KHGNFQEALNMRNKMMEMGIELDLYAYTSLVWGLSQCGQVQQARKFLAEMIGKGIIPDET 588

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             + L+      G ++ A EL   +   G  H
Sbjct: 589 LCTRLLRKHYELGNIDEAIELQNELVEKGLIH 620



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 68/227 (29%), Positives = 107/227 (47%), Gaps = 6/227 (2%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R+   P    F +L   L     +  A   F ++  F   P   + +  ++ L + G   
Sbjct: 55  RNVCVPGFGVFDALFSVLVELGMLEAAGQCFLRMTKFRVLPKARSCNAFLHRLSKAGEGD 114

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           ++ + F +M       G    P   TY  +I  +CKEG +  A+ LF QMK   + PD+V
Sbjct: 115 LSRDFFRDMV------GAGIAPTVFTYNIMIGHVCKEGDMLTARSLFEQMKKMGLTPDIV 168

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI G+      +E+ CL  EM   G +PDV+T+N +++  CK   M  A      M
Sbjct: 169 TYNTLIDGYGKIGLLDESVCLFEEMKFMGCEPDVITYNALINSFCKFKGMLRAFEFFREM 228

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             + + PN  ++STL+D  C  G +  A + FV M  +G     F+Y
Sbjct: 229 KDKDLKPNVISYSTLIDALCKEGMMQMAIKFFVDMTRVGLLPNEFTY 275


>gi|15234269|ref|NP_192906.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213756|sp|Q9T0D6.1|PP306_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g11690
 gi|4539460|emb|CAB39940.1| putative protein [Arabidopsis thaliana]
 gi|7267869|emb|CAB78212.1| putative protein [Arabidopsis thaliana]
 gi|91806660|gb|ABE66057.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332657639|gb|AEE83039.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 566

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 154/288 (53%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L   L K         +++++   G+FP+LYTYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLINGLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEM 294

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                + + V + +LI GLC E ++ EA  +  ++K+ G  PN+ITY+TLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL+L  ++ +          P+ VTY  ++ G C++G    A ++  +M+++ I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSK 408

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY  LI  F  +++  +A  L + M + G+ PDV T++V++   C  G+M+EASRL + 
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKS 468

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ +   PN   ++T++ G+C  G    A +L   ME       V SY
Sbjct: 469 MVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASY 516



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 157/292 (53%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN L   +  +  ++   S F   N + +  D+Y++ ILI   C+ G +   F +
Sbjct: 127 PGSNCFNYLLTFVVGSSSFNQWWSFFNE-NKSKVVLDVYSFGILIKGCCEAGEIEKSFDL 185

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +    F+P+ V +T+LI G C +  I +A  LF ++   G   N  TY+ LINGL +
Sbjct: 186 LIELTEFGFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFK 245

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G       ++E+M   +G F     PN  TY  +++ LCK+G    A ++F +M+++ +
Sbjct: 246 NGVKKQGFEMYEKMQE-DGVF-----PNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGV 299

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           + ++VTYN+LI G C     NEAN ++ +M   G+ P+++T+N ++D  C  GK+ +A  
Sbjct: 300 SCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALS 359

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   +  RG++P+  T++ L+ GFC  G  + A ++   ME  G K +  +Y
Sbjct: 360 LCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTY 411



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 154/300 (51%), Gaps = 10/300 (3%)

Query: 94  FDYMLNMRP---SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           FD ++ +     SP  +    L+ GC  K    +    LF  +   GL  +  TY +LIN
Sbjct: 183 FDLLIELTEFGFSPNVVIYTTLIDGC-CKKGEIEKAKDLFFEMGKLGLVANERTYTVLIN 241

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
              K G    GF +  ++      P+   +  ++  LC + R  +A  +F +++  G   
Sbjct: 242 GLFKNGVKKQGFEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSC 301

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N++TY+TLI GLCR      A  + ++M +          PN +TY T+IDG C  G + 
Sbjct: 302 NIVTYNTLIGGLCREMKLNEANKVVDQMKSDG------INPNLITYNTLIDGFCGVGKLG 355

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA  L   +K + ++P +VTYN L+ GFC   D + A  ++ EM ++G++P  VT+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           D   ++  M++A +L   M   G+ P+  T+S L+ GFC+ G++N A  LF SM    C+
Sbjct: 416 DTFARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCE 475



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 146/276 (52%), Gaps = 7/276 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M   R     + ++N L G L +    +    +  ++ S G+ P+L TYN L
Sbjct: 286 DAFQVFDEMRE-RGVSCNIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINPNLITYNTL 344

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC +G++     +   +     +P  V +  L+ G C +     AA +  +++  G 
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCRKGDTSGAAKMVKEMEERGI 404

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+ LI+   R+ +   A+ L   M     + G+V  P+  TY+ +I G C +G 
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRLSME----ELGLV--PDVHTYSVLIHGFCIKGQ 458

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A  LF  M +KN  P+ V YN++I G+C       A  LL EM ++ + P+V ++  
Sbjct: 459 MNEASRLFKSMVEKNCEPNEVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRY 518

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +++ LCK  K  EA RL+E MI  G++P+TS  S +
Sbjct: 519 MIEVLCKERKSKEAERLVEKMIDSGIDPSTSILSLI 554


>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
          Length = 693

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 146/282 (51%), Gaps = 7/282 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  +   L K K  + V  L +R+ N  GLFPD  TYN+LI+   K G      
Sbjct: 231 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEAL 290

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             L       F  D V +++++   C   R+ EA  +  ++ + GC+P+V+TYST+++G 
Sbjct: 291 EFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 350

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A  + + M   +      CKPNTVT+T +++GLCK G   +A EL  + +++
Sbjct: 351 CRIGELDQARKMMKHMYKND------CKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEE 404

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P  +TY+ ++HGF       E+  ++++M+ +G  P  V  N+++  LCK+GK  EA
Sbjct: 405 WWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEA 464

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              +E    +G   N   F+T++ GF   G +  A  L   M
Sbjct: 465 KDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 506



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 161/348 (46%), Gaps = 21/348 (6%)

Query: 41  NEPSDPTTTAKLKESLRLTV--KDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
            E   P   A+L+  LR+    + RA L        ++  +GD+      E F   D   
Sbjct: 75  RESWSPKLEAQLRHLLRVLSPPQVRAVL--------RAQARGDVR--RAFEFFRWADRQW 124

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             R +P     F  L    ++     + + +   +   G  PD+   N+ +N     GRV
Sbjct: 125 RYRHAP----EFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRV 180

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                   R+ R    PD   +  LIKGLC   R+++A  +   +   GC P+ I+Y T+
Sbjct: 181 DKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTV 240

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++ LC+         L + M N  G F     P+ VTY  +I GL K G  D+A E   +
Sbjct: 241 MSFLCKEKRVEEVRGLLQRMRNDAGLF-----PDQVTYNVLIHGLAKHGHADEALEFLRE 295

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
            + K    D V Y++++H FC      EA  ++ EM+ +G QPDVVT++ ++D  C+ G+
Sbjct: 296 SEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGE 355

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +D+A ++++ M      PNT T + L++G C  G+ + A EL    E 
Sbjct: 356 LDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKSEE 403



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 154/322 (47%), Gaps = 30/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++  N+    L      D  L   +R+   G+ PD+YTYN LI   C   RV     +
Sbjct: 162 PDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEM 221

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLC 223
           +G +L++   PD +++ +++  LC E R+ E   L  +++   G  P+ +TY+ LI+GL 
Sbjct: 222 IGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 281

Query: 224 RTGHTIVALNLFEE-------------------------MANGNGKFGVV----CKPNTV 254
           + GH   AL    E                         MA      G +    C+P+ V
Sbjct: 282 KHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVV 341

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TY+T++DG C+ G +D+A+++   M   +  P+ VT+ +L++G C     +EA  LL + 
Sbjct: 342 TYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWELLNKS 401

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            ++   P  +T++V+M    + GK+ E+  ++  M+ +G  P T   + L+   C  G+ 
Sbjct: 402 EEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKP 461

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             AK+     +S GC   V ++
Sbjct: 462 AEAKDFMEQCQSKGCTINVVNF 483



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 125/238 (52%), Gaps = 6/238 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  PD+ TY+ +++ FC++G +     ++  + ++   P+ V  T+L+ GLC   +  
Sbjct: 333 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 392

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  L  K +     P+ ITYS +++G  R G    + ++  +M    G F     P TV
Sbjct: 393 EAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQ-KGFF-----PTTV 446

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
               +I  LCK+G   +AK+   Q + K    +VV + ++IHGF    D   A  L+ +M
Sbjct: 447 EINLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 506

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
                 PDVVT+ V++D L K G++ EA+ L+E M+ RG+ P   T+ T++  +C  G
Sbjct: 507 YLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIHRYCEKG 564



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/271 (27%), Positives = 116/271 (42%), Gaps = 42/271 (15%)

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC------- 208
           G V   F       R      A  F  L+       ++  A  +   ++  GC       
Sbjct: 108 GDVRRAFEFFRWADRQWRYRHAPEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISIC 167

Query: 209 ----------------------------KPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
                                       +P+V TY+ LI GLC     + A+ +   M  
Sbjct: 168 NMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQ 227

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK-DKNINPDVVTYNSLIHGFC 299
            NG     C P+ ++Y T++  LCKE  V++ + L  +M+ D  + PD VTYN LIHG  
Sbjct: 228 -NG-----CPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 281

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                +EA   L E   +  + D V ++ I+   C NG+M EA  ++  MI +G  P+  
Sbjct: 282 KHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVV 341

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           T+ST++DGFC  G ++ A+++   M    CK
Sbjct: 342 TYSTVVDGFCRIGELDQARKMMKHMYKNDCK 372



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 136/365 (37%), Gaps = 97/365 (26%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L   LAK  H D  L   +         D   Y+ +++ FC  GR++    +
Sbjct: 268 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 327

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +G ++     PD V +++++ G C    + +A  +   +    CKPN +T++ L+NGLC+
Sbjct: 328 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCK 387

Query: 225 TGHTIVALNLF----EEMA--------------NGNGKFGVVCK-----------PNTVT 255
            G T  A  L     EE                   GK    C            P TV 
Sbjct: 388 VGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVE 447

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN---------- 305
              +I  LCK+G   +AK+   Q + K    +VV + ++IHGF    D            
Sbjct: 448 INLLIHALCKDGKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMY 507

Query: 306 -------------------------EANCLLIEMMDQGVQPDVVTF-------------- 326
                                    EA  L+ +M+++G+ P  VT+              
Sbjct: 508 LSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIHRYCEKGNLE 567

Query: 327 -------------------NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                              N ++++LC  GK++EA  LL  ++      +  T   LM+ 
Sbjct: 568 DLLNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMES 627

Query: 368 FCLTG 372
           F   G
Sbjct: 628 FLNRG 632



 Score = 92.8 bits (229), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 130/277 (46%), Gaps = 8/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     +    D    + K +      P+  T+  L+N  CK+G+ S  + +
Sbjct: 338 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 397

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +     +TP  + ++ ++ G   E ++ E+  +  ++   G  P  +  + LI+ LC+
Sbjct: 398 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 457

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +  E+  +        C  N V +TT+I G  ++G ++ A  L   M   N 
Sbjct: 458 DGKPAEAKDFMEQCQSKG------CTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNR 511

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDVVTY  ++          EA  L+ +M+++G+ P  VT+  ++   C+ G +++   
Sbjct: 512 HPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGLLPTPVTYRTVIHRYCEKGNLEDLLN 571

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LLE M+ R      S ++ +++  C  G++N A  L 
Sbjct: 572 LLEKMLAR--QEMKSAYNQVVEKLCAFGKLNEAYSLL 606



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 32/300 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +  +M      P  +T   LL G L K         L  +       P   TY++
Sbjct: 357 DQARKMMKHMYKNDCKPNTVTHTALLNG-LCKVGKTSEAWELLNKSEEEWWTPSDITYSV 415

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ F + G++     V+ ++L+  F P  V    LI  LC + +  EA     + ++ G
Sbjct: 416 VMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDGKPAEAKDFMEQCQSKG 475

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVVCK-- 250
           C  NV+ ++T+I+G  R G    AL+L ++M   N               GK G + +  
Sbjct: 476 CTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEAT 535

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P  VTY T+I   C++G ++    L  +M  +        YN ++   
Sbjct: 536 GLVEKMLNRGLLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKL 593

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C     NEA  LL +++      D  T +++M+     G   +A  +   M  R + P+ 
Sbjct: 594 CAFGKLNEAYSLLYKILRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDV 653



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 36/130 (27%), Positives = 54/130 (41%)

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V +A E F     +        +  L+  +  A     A  +L  M   G  PD+   
Sbjct: 108 GDVRRAFEFFRWADRQWRYRHAPEFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISIC 167

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+ ++ L   G++D+A    E M   GV P+  T++ L+ G C   RV  A E+   M  
Sbjct: 168 NMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQ 227

Query: 387 MGCKHTVFSY 396
            GC     SY
Sbjct: 228 NGCPPDKISY 237


>gi|410109899|gb|AFV61029.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           micrantha]
          Length = 431

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 390



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++  A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M   G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTY 425



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMHRDGHAPSVVTYNVLMNG 431



 Score = 61.6 bits (148), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDTGTYTMIINEFCKKGDVWKGSKLLKEMHRDGHAPSVVTYNVLMNG 431


>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
          Length = 1088

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 98/309 (31%), Positives = 158/309 (51%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A+ +F  M N +   P + ++  L   L  +      + LF R++  G+FP+  TYN 
Sbjct: 507 EDAWRLFVDMKN-KGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNA 565

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN   +  R+ + FVVL  + R+    + V +  +IKG C      +A  +   +   G
Sbjct: 566 LINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRG 625

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N++TY+T+I G C +G+T  AL + + M +G       CKP+  +YT +I G CK  
Sbjct: 626 HSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGG------CKPDEWSYTELICGFCKIS 679

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A  LF +M D  + P+ VTY +LI G+C     + A  LL  M   G +P+V T+N
Sbjct: 680 KMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYN 739

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++  L K      A  L ++MI  G+ PN  T++ ++DG C  G  + A E+F  M   
Sbjct: 740 VLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQ 799

Query: 388 GCKHTVFSY 396
           GC   + +Y
Sbjct: 800 GCLPNLLTY 808



 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 144/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L + +       +   +   GLF ++ TYN +I  +C +G      +V
Sbjct: 558 PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLV 617

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L+   + + V + ++IKG C       A  +   ++  GCKP+  +Y+ LI G C+
Sbjct: 618 MNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFCK 677

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LF EM +       +C PN VTYT +IDG CK+  +D A  L   MK    
Sbjct: 678 ISKMESAFGLFNEMVDDG-----LC-PNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGC 731

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TYN LIHG    N+++ A  L   M+++G+ P+VVT+  ++D LCKNG    A  
Sbjct: 732 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALE 791

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   MI +G  PN  T+S+L+      G+V  A+ LF  +E  G
Sbjct: 792 MFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHG 835



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L +++ L   L++      V+  + R+ S G+ P+L  YN +IN  CK G V+    ++ 
Sbjct: 350 LFAYSALLIHLSRLGMTAAVMDRYHRMLSEGVQPNLLIYNAVINALCKDGNVADAETIMK 409

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++  S  +PD   +TS+I G C +  +  A  +F ++   GC+PN +TYSTLINGLC +G
Sbjct: 410 KVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSG 469

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A +L  EM       G++  P   T T  I  LC  G  + A  LF+ MK+K   P
Sbjct: 470 RVNEAFDLIREMI----LHGIL--PTAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEP 523

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI G C +     A  L   M   GV P+ VT+N +++ L +N ++  A  +L
Sbjct: 524 NVYTYTALISGLCVSGLLKVAIGLFHRMSRDGVFPNTVTYNALINILVENRRIKYAFVVL 583

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LM   G+  N  T++ ++ G+C+ G    A  +  +M   G    + +Y
Sbjct: 584 NLMGRNGLFTNIVTYNEMIKGYCILGDPKKAMLVMNNMLQRGHSANLVTY 633



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 140/282 (49%), Gaps = 7/282 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  + + ML  R     L ++N +      + +  + L +   +   G  PD ++Y 
Sbjct: 611 PKKAMLVMNNMLQ-RGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYT 669

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI  FCK+ ++   F +   ++     P+ V +T+LI G C + ++  A +L   +K  
Sbjct: 670 ELICGFCKISKMESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRS 729

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC+PNV TY+ LI+GL +  +   A  L + M    G F     PN VTYT +IDGLCK 
Sbjct: 730 GCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMIE-EGIF-----PNVVTYTAMIDGLCKN 783

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A E+F +M ++   P+++TY+SLI          EA  L  E+   G+ PD +T+
Sbjct: 784 GSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITY 843

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +++    +GK++ A   L  MI  G  P   T+  L+ G 
Sbjct: 844 VKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGL 885



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/319 (27%), Positives = 147/319 (46%), Gaps = 41/319 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L K  +     ++ K++  + + PD +TY  +I   C+   +     V
Sbjct: 383 PNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQV 442

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIME----------------------------- 195
             ++ +    P+ V +++LI GLC   R+ E                             
Sbjct: 443 FNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCTGPIIALCD 502

Query: 196 ------AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                 A  LF  +K  GC+PNV TY+ LI+GLC +G   VA+ LF  M+  +G F    
Sbjct: 503 MGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRMSR-DGVF---- 557

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PNTVTY  +I+ L +   +  A  +   M    +  ++VTYN +I G+C   D  +A  
Sbjct: 558 -PNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCILGDPKKAML 616

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++  M+ +G   ++VT+N I+   C +G    A R+L+LM   G  P+  +++ L+ GFC
Sbjct: 617 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 676

Query: 370 LTGRVNHAKELFVSMESMG 388
              ++  A  LF  M   G
Sbjct: 677 KISKMESAFGLFNEMVDDG 695



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/279 (28%), Positives = 137/279 (49%), Gaps = 10/279 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            +L+  C +K     T +S    L+ +GL   L+ Y+ L+    ++G  +       R+L
Sbjct: 319 IHLIKSCHSKEAMART-MSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRML 377

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ + + ++I  LC +  + +A  +  K+      P+  TY+++I G CR     
Sbjct: 378 SEGVQPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLD 437

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            AL +F +MA         C+PNTVTY+T+I+GLC  G V++A +L  +M    I P   
Sbjct: 438 SALQVFNQMAKEG------CEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAH 491

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T    I   C    + +A  L ++M ++G +P+V T+  ++  LC +G +  A  L   M
Sbjct: 492 TCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFHRM 551

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
              GV PNT T++ L++      R+ +A   FV +  MG
Sbjct: 552 SRDGVFPNTVTYNALINILVENRRIKYA---FVVLNLMG 587



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 112/214 (52%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIK   ++  +    +    L   G +  +  YS L+  L R G T   ++ +  M +  
Sbjct: 321 LIKSCHSKEAMARTMSFLDMLSQSGLRMGLFAYSALLIHLSRLGMTAAVMDRYHRMLSE- 379

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              GV  +PN + Y  +I+ LCK+G V  A+ +  ++ +  ++PD  TY S+I G C  +
Sbjct: 380 ---GV--QPNLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKH 434

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           D + A  +  +M  +G +P+ VT++ +++ LC +G+++EA  L+  MIL G+ P   T +
Sbjct: 435 DLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPTAHTCT 494

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +   C  G    A  LFV M++ GC+  V++Y
Sbjct: 495 GPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTY 528



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 130/304 (42%), Gaps = 30/304 (9%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + ++N+L   L K  ++     L K +   G+FP++ TY  +I+  CK G  S    +
Sbjct: 733  PNVQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEM 792

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++     P+ + ++SLI+ L  E ++ EA  LF +L+  G  P+ ITY  +I     
Sbjct: 793  FNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIM 852

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL--------------------C 264
            +G    A N    M          C+P   TY  +I GL                    C
Sbjct: 853  SGKVEHAFNFLGRMIKAG------CQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNC 906

Query: 265  KEGF--VDKAKELFLQMKDKNINP--DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
              G+   D+     +  K   ++P   V   N+L+     A  W EAN LL  M+ QG+ 
Sbjct: 907  SFGYQTTDQDAVSVMSAKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLC 966

Query: 321  PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            PD   +N ++  L +   +D A  + + M  +G   + + +  L+   C   R   A+  
Sbjct: 967  PDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEVHLNGYKELICALCQLHRRKEARIT 1026

Query: 381  FVSM 384
            F +M
Sbjct: 1027 FENM 1030



 Score = 56.2 bits (134), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 56/253 (22%), Positives = 90/253 (35%), Gaps = 65/253 (25%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P L +++ L   L +    +   +LF  L   GL PD  TY  +I  +   G+V H F  
Sbjct: 803  PNLLTYSSLIRALGQEGKVEEAENLFAELERHGLIPDEITYVKMIEAYIMSGKVEHAFNF 862

Query: 165  LGRILRSCFTP------------------------------------------DAVAFTS 182
            LGR++++   P                                          DAV+  S
Sbjct: 863  LGRMIKAGCQPTLWTYGVLIKGLKNEYLLADQRLAALPDVVPNCSFGYQTTDQDAVSVMS 922

Query: 183  -----------------LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
                             L+  L    R  EA  L   + + G  P+   Y++L+  L R 
Sbjct: 923  AKLAELDPGLSVQVQNALVSNLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRV 982

Query: 226  GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
             +  +A+ +F+ M+         C+ +   Y  +I  LC+     +A+  F  M  +  N
Sbjct: 983  RNVDLAMGVFKHMSTQG------CEVHLNGYKELICALCQLHRRKEARITFENMLMRTWN 1036

Query: 286  PDVVTYNSLIHGF 298
            PD V    LI G 
Sbjct: 1037 PDDVVQAVLIDGL 1049



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 75/204 (36%), Gaps = 12/204 (5%)

Query: 91   FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
            + + D  L   P   P  SF        +T   D V  +  +L        +   N L++
Sbjct: 889  YLLADQRLAALPDVVPNCSFGY------QTTDQDAVSVMSAKLAELDPGLSVQVQNALVS 942

Query: 151  CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
                 GR      +LG ++     PD  A+ SL+  L     +  A  +F  +   GC+ 
Sbjct: 943  NLSTAGRWFEANELLGSMISQGLCPDQEAYNSLLCSLLRVRNVDLAMGVFKHMSTQGCEV 1002

Query: 211  NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
            ++  Y  LI  LC+      A   FE M            P+ V    +IDGL ++G+ D
Sbjct: 1003 HLNGYKELICALCQLHRRKEARITFENM------LMRTWNPDDVVQAVLIDGLLRDGYKD 1056

Query: 271  KAKELFLQMKDKNINPDVVTYNSL 294
               E    M+ +   P    Y  L
Sbjct: 1057 LCMEFLHIMETRRYMPSFHIYTIL 1080


>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
 gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
 gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
          Length = 913

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 144/308 (46%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  ++  M++    PP   +F +    L +    D  L+L + +   G  PD   Y  +
Sbjct: 157 DALALYRRMVHRDRVPPTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTV 216

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G V+    +L  +L      D   F  +++G+C   R+ EAA L  ++   GC
Sbjct: 217 IHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGC 276

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V+TY  L+ GLCR            +        G V + N V + T+I G   EG 
Sbjct: 277 MPGVMTYGFLLQGLCRV----------RQADEARAMLGRVPELNVVLFNTVIGGCLAEGK 326

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A EL+  M  K   PD  TY+ L+HG C       A  LL EM  +G  P+VVT+ +
Sbjct: 327 LAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTI 386

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CKNG  D+   LLE M  +G+  N+  ++ ++   C  GR++ A  L   M S G
Sbjct: 387 VLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG 446

Query: 389 CKHTVFSY 396
           C   + SY
Sbjct: 447 CNPDICSY 454



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 141/298 (47%), Gaps = 23/298 (7%)

Query: 112 LLFGCLAKTKHYDTVLS-------------LFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           LL GC A    +D V+              L  R+ + G  P + TY  L+   C++ + 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +LGR+       + V F ++I G  AE ++ EA  L+  +   GC+P+  TYS L
Sbjct: 297 DEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++GLC+ G    A+ L  EM     K G    PN VTYT ++   CK G  D  + L  +
Sbjct: 353 MHGLCKLGRIGSAVRLLREME----KKGFA--PNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K +  +   YN +I+  C     +EA  L+ EM  QG  PD+ ++N I+  LC N +
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+EA  + E ++  GV  N  T++T++      GR   A  L   M   GC   V SY
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSY 524



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 148/288 (51%), Gaps = 8/288 (2%)

Query: 110 FN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           FN ++ GCLA+ K  +    L++ +   G  PD +TY+IL++  CK+GR+     +L  +
Sbjct: 314 FNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREM 372

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +  F P+ V +T ++   C      +  AL  ++ A G   N   Y+ +I  LC+ G  
Sbjct: 373 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 432

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ L +EM +        C P+  +Y TII  LC    +++A+ +F  + ++ +  + 
Sbjct: 433 DEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +TYN++IH       W +A  L  EM+  G   DVV++N ++  +CK+G +D +  LLE 
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+ PN  +++ L+   C   RV  A EL   M + G    + +Y
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTY 594



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M  ++   P   ++++L   L K     + + L + +   G  P++ TY I+
Sbjct: 329 EATELYETM-GLKGCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIV 387

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FCK G       +L  +     T ++  +  +I  LC + R+ EA  L  ++++ GC
Sbjct: 388 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 447

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ +Y+T+I  LC       A ++FE +     + GVV   N +TY TII  L ++G 
Sbjct: 448 NPDICSYNTIIYHLCNNEQMEEAEHMFENLL----EEGVVA--NGITYNTIIHALLRDGR 501

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              A  L  +M     + DVV+YN LI   C   + + +  LL EM ++G++P+ V++N+
Sbjct: 502 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 561

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++ ELCK  ++ +A  L + M+ +G+ P+  T++TL++G C  G ++ A  L   + +  
Sbjct: 562 LISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEN 621

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 622 VHPDIITY 629



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            +N +   L K    D  + L + + S G  PD+ +YN +I   C   ++     +   +
Sbjct: 418 GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L      + + + ++I  L  + R  +A  L  ++   GC  +V++Y+ LI  +C+ G+ 
Sbjct: 478 LEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV 537

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             +L L EEMA          KPN V+Y  +I  LCKE  V  A EL  QM ++ + PD+
Sbjct: 538 DRSLVLLEEMAEKG------IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDI 591

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           VTYN+LI+G C     + A  LL ++ ++ V PD++T+N+++   CK   +D+A+ LL
Sbjct: 592 VTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 6/211 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +   L   +  +    +F+ L   G+  +  TYN +I+   + GR      +
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    + D V++  LIK +C +  +  +  L  ++   G KPN ++Y+ LI+ LC+
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L ++M N          P+ VTY T+I+GLCK G++  A  L  ++ ++N+
Sbjct: 569 ERRVRDALELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           +PD++TYN LI   C     ++A  LL   M
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 49/101 (48%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+N+L   L K +     L L K++ + GL PD+ TYN LIN  CKMG +     +L +
Sbjct: 557 VSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEK 616

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +      PD + +  LI   C    + +AA L  +  A  C
Sbjct: 617 LHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657


>gi|222629056|gb|EEE61188.1| hypothetical protein OsJ_15186 [Oryza sativa Japonica Group]
          Length = 897

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++NLL   L           L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 621 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 680

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R       V +T+LI  L  + ++ E   LF +    G +P+++ Y+ LIN    +G
Sbjct: 681 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 740

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  +  EM            P+ VTY T++ GLC  G VD+A++L  +M ++ I P
Sbjct: 741 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 794

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTYN+LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 795 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 854

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
           + M+  G+ P+ ST+ +L++G 
Sbjct: 855 KEMVENGITPDDSTYISLIEGL 876



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD ML      P    +N L G        DT L    R+   G+   + TYN+
Sbjct: 567 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 626

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++     GR +  + ++  +      PD   +  LI G C E  + +A  +F  +   G
Sbjct: 627 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 686

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  V+TY+ LI  L + G       LF+E      + G+  +P+ V Y  +I+     G
Sbjct: 687 VRATVVTYTALIYALSKKGQVQETDKLFDEAV----RRGI--RPDLVLYNALINSHSTSG 740

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+  +M+ K I PD VTYN+L+ G C     +EA  L+ EM ++G+QPD+VT+N
Sbjct: 741 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 800

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++      G + +A R+   M+ +G NP   T++ L+ G C  G+ + A+ +   M   
Sbjct: 801 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 860

Query: 388 G 388
           G
Sbjct: 861 G 861



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 89/302 (29%), Positives = 148/302 (49%), Gaps = 9/302 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKM 155
           +L   P P  +T +N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 505 LLRQMPRPNAVT-YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 563

Query: 156 GRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 564 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 623

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ L++ L   G    A  L EEM       G    P+  TY  +I+G CKEG V KA E
Sbjct: 624 YNLLVHALFMDGRGTEAYELVEEMG------GKGLAPDVFTYNILINGHCKEGNVKKALE 677

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  M  + +   VVTY +LI+         E + L  E + +G++PD+V +N +++   
Sbjct: 678 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 737

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            +G +D A  ++  M  + + P+  T++TLM G CL GRV+ A++L   M   G +  + 
Sbjct: 738 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLV 797

Query: 395 SY 396
           +Y
Sbjct: 798 TY 799



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 27/210 (12%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGN--------------GKFGVVCK--------- 250
           T++ ++  LC  G    AL L  +M   N              G+               
Sbjct: 485 TFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG 544

Query: 251 ---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNE 306
              PN  TY T+I G CK G VD+A ++F +M  K  + P+ V YN+LI G+C     + 
Sbjct: 545 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 604

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A      M+++GV   V T+N+++  L  +G+  EA  L+E M  +G+ P+  T++ L++
Sbjct: 605 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 664

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G V  A E+F +M   G + TV +Y
Sbjct: 665 GHCKEGNVKKALEIFENMSRRGVRATVVTY 694



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M   R   P L ++N L    +        L +   + + G  P L TYN 
Sbjct: 778 DEARKLIDEMTE-RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 836

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           LI   CK G+      ++  ++ +  TPD   + SLI+GL  E
Sbjct: 837 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 879


>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
 gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
          Length = 479

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 145/292 (49%), Gaps = 12/292 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+  L   L +T   D   S    +    L PD++TYN++I+  CK  R+S     
Sbjct: 33  PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 90

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
                 +   PD V + +L+ GLC   R+ +A +LF  ++  G  P+ +TY+TLI+  C+
Sbjct: 91  --EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 148

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L + MA+        C P   +Y +II+GLCK   VD+A +LF +MK    
Sbjct: 149 MCQFETAYGLLQLMASRK------CSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 202

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTYN+LIHG C     +EA  LL  M++ G QPD +TF  +++ LC   ++ EA  
Sbjct: 203 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFV 262

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  +G  P+  T + L+   C+  ++  A  L V      C   V  Y
Sbjct: 263 LFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPA--LSVVRNYPACPEAVILY 312



 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 149/303 (49%), Gaps = 14/303 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + S+  +   L K +  D    LF+ +   G  PD  TYN LI+  C   
Sbjct: 161 LMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQ 220

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R+     +L  ++ + F PD + FT+LI+GLC   RI EA  LF  +   GC P+++T++
Sbjct: 221 RLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHT 280

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            L++ LC       AL++              C    + YT I   L +    D+A  L 
Sbjct: 281 VLVSKLCILRKLRPALSVVRNYP--------ACPEAVILYTPIFRELGRRRGFDRAARLL 332

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE---MMDQGVQPDVVTFNVIMDEL 333
            +M  + + P+VVTY +   G     DW E      E   M++QG++PD+V +NV++D  
Sbjct: 333 QKMARRGVPPNVVTYTAFFKGL---GDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGF 389

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK  ++D A +++  M   G+ PN  T++TL+   C  G+V    EL  +M S G +  V
Sbjct: 390 CKADRLDMAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDV 449

Query: 394 FSY 396
            ++
Sbjct: 450 ATW 452



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 140/289 (48%), Gaps = 15/289 (5%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L + +  + ++ +F+R+ S    P+  +Y  L+   C+ G++      +  + R
Sbjct: 4   NALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAR 63

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD   +  +I  LC   RI  A   F  +     +P+V+TY+TL+ GLC+ G    
Sbjct: 64  EKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----EPDVVTYNTLLGGLCKNGRVAQ 119

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A +LF  M       G    P+ VTYTT+ID  CK    + A  L   M  +  +P V +
Sbjct: 120 ACSLFGSME------GAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYS 173

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y S+I+G C     ++A  L  EM   G +PD VT+N ++  LC   ++ EA  LL +M+
Sbjct: 174 YCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMV 233

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK-----HTVF 394
             G  P+  TF+ L++G C T R+  A  LF  M   GC      HTV 
Sbjct: 234 ENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVL 282



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/360 (27%), Positives = 151/360 (41%), Gaps = 78/360 (21%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N++   L K +     +  F+ +      PD+ TYN L+   CK GRV+    +
Sbjct: 68  PDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSL 123

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +  +  TP  V +T+LI   C   +   A  L   + +  C P V +Y ++INGLC+
Sbjct: 124 FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 183

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LFEEM          CKP+ VTY T+I GLC +  + +AK+L   M +   
Sbjct: 184 NRKVDQAYQLFEEMKLAG------CKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENGF 237

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC---------- 334
            PD +T+ +LI G C  +   EA  L   M  QG  PD+VT  V++ +LC          
Sbjct: 238 QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCILRKLRPALS 297

Query: 335 -----------------------KNGKMDEASRLLELMILRGVNPNTSTFST-------- 363
                                  +    D A+RLL+ M  RGV PN  T++         
Sbjct: 298 VVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPPNVVTYTAFFKGLGDW 357

Query: 364 ---------------------------LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                                      L+DGFC   R++ A+++   M+  G    + +Y
Sbjct: 358 KEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMAEKMVRYMDQSGLPPNIVTY 417



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/245 (33%), Positives = 125/245 (51%), Gaps = 10/245 (4%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T N L++   +  R     VV  RI      P+A+++  L+K LC   +I +A +   ++
Sbjct: 2   TCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEM 61

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                 P+V TY+ +I+ LC+      A+  FE M           +P+ VTY T++ GL
Sbjct: 62  AREKLVPDVFTYNVVIDTLCKARRISRAIEFFETMP----------EPDVVTYNTLLGGL 111

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G V +A  LF  M+   I P  VTY +LI  FC    +  A  LL  M  +   P V
Sbjct: 112 CKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTV 171

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            ++  I++ LCKN K+D+A +L E M L G  P+  T++TL+ G C+  R++ AK+L   
Sbjct: 172 YSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQRLHEAKDLLTV 231

Query: 384 MESMG 388
           M   G
Sbjct: 232 MVENG 236



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 72/143 (50%), Gaps = 4/143 (2%)

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           VT   ++D L +    ++   +F ++  ++  P+ ++Y  L+   C     ++A   + E
Sbjct: 1   VTCNALLDLLERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAE 60

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M  + + PDV T+NV++D LCK  ++  A    E M      P+  T++TL+ G C  GR
Sbjct: 61  MAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETM----PEPDVVTYNTLLGGLCKNGR 116

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           V  A  LF SME  G   +  +Y
Sbjct: 117 VAQACSLFGSMEGAGITPSDVTY 139


>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
          Length = 833

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 151/308 (49%), Gaps = 6/308 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F+ M       P   ++++L   L +    +    L + +   G  P   TY +L
Sbjct: 181 EAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 240

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C +G       +L  +      P+   +T LI  LC E +I EA  +F K+   G 
Sbjct: 241 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 300

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P +IT++ LING C+ G  + A  L   M  GN      CKPN  TY  +++GLC+   
Sbjct: 301 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCRVSK 354

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             KA  L  ++ D  + PD VTYN L+ GFC     N A  +   M   G++PD  TF  
Sbjct: 355 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTA 414

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK G++++A+ +L  M+ +G++ +  TF+ L+DG C  G+      LF +M    
Sbjct: 415 LIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENR 474

Query: 389 CKHTVFSY 396
           C  T  ++
Sbjct: 475 CLTTAHTF 482



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 166/344 (48%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M   +   P + ++ +L   L +    +    +F+++   GL P + T+N 
Sbjct: 251 DKAMKMLDEMAT-KACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNA 309

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK G V   F +L  + +    P+   +  L++GLC  S+  +A  L  ++   G
Sbjct: 310 LINGYCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNG 369

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+ L++G C+ G   +A N+F  M +         +P+  T+T +IDGLCK G
Sbjct: 370 LLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAG------LEPDGFTFTALIDGLCKLG 423

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFC---------------------------- 299
            +++A  +   M  K I+ D VT+ +LI G C                            
Sbjct: 424 RLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFN 483

Query: 300 -----YANDW--NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
                   D+  NEAN +L +MM  G+ P VVT  ++++  C+ G+   + ++LE M   
Sbjct: 484 CFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQA 543

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G +PN  T++ +++G C  GRV  A+ +  SM S G     F+Y
Sbjct: 544 GCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTY 587



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 47/336 (13%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L  R S P    ++ L  CLAK         +++R+ + G       Y  ++N  CK G 
Sbjct: 87  LGFRLSYP---CYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 143

Query: 158 VSHGFVVLGRILRSCF------------------------------------TPDAVAFT 181
           V    +   ++LR  F                                     P++V ++
Sbjct: 144 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYS 203

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            LI GLC   R+ EA  L  ++   GC+P+  TY+ LI   C  G T  A+ + +EMA  
Sbjct: 204 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 263

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C PN  TYT +ID LC+EG +++A  +F +M    + P ++T+N+LI+G+C  
Sbjct: 264 ------ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYC-K 316

Query: 302 NDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             W  +   L+ +M++G  +P++ T+N +M+ LC+  K  +A  LL  ++  G+ P+  T
Sbjct: 317 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVT 376

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ L+DGFC  G++N A  +F SM S G +   F++
Sbjct: 377 YNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTF 412



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   M      P   T   L+ G    +K Y   L L +R+   GL PD  TYNIL+
Sbjct: 323 AFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-LLRRVVDNGLLPDRVTYNILV 381

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FCK G+++  F +   +  +   PD   FT+LI GLC   R+ +A  +   +   G  
Sbjct: 382 DGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGIS 441

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + +T++ LI+G C+ G       LFE M          C     T+   +D L K+  +
Sbjct: 442 LDEVTFTALIDGHCKIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKDYKL 495

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A  +  +M    + P VVT+  LI G C A +   +  +L  M   G  P+V T+ +I
Sbjct: 496 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 555

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LC NG+++EA  +L  M   GV+PN  T++ L+      GR++ A ++  +M   GC
Sbjct: 556 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 615

Query: 390 K 390
           +
Sbjct: 616 Q 616



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 159/382 (41%), Gaps = 115/382 (30%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L     K    +   ++F  +NS GL PD +T+  LI+  CK+GR+     +
Sbjct: 372 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 431

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC---------------AESRIM--------------- 194
           LG +++   + D V FT+LI G C                E+R +               
Sbjct: 432 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 491

Query: 195 -----EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                EA A+  K+  +G  P+V+T++ LI G CR G T ++L + E M          C
Sbjct: 492 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG------C 545

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY------------------ 291
            PN  TYT II+GLC  G V++A+ +   M    ++P+  TY                  
Sbjct: 546 SPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQ 605

Query: 292 -----------------NSLIHGFCYAN---------------------DWNEANCL--- 310
                            ++L+ GF  +N                     + N+ NCL   
Sbjct: 606 IVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSH 665

Query: 311 LIEMMDQ-------------GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +  +MD              GV P    +N ++  LCK G++ EA +L + M+  G+ P+
Sbjct: 666 VFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD 724

Query: 358 TSTFSTLMDGFCLTGRVNHAKE 379
            +  S++++ +C T + ++  E
Sbjct: 725 KA-ISSIIEHYCKTCKYDNCLE 745



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 45/309 (14%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN     L K    +   ++  ++   GL P + T+ ILI   C+ G  +    +L R+
Sbjct: 481 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 540

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++  +P+   +T +I GLC   R+ EA  +   + +FG  PN  TY+ L+    + G  
Sbjct: 541 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 600

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG------------LCKEGFVDKAKELF 276
             A  +   M   NG     C+PN+  Y+ ++ G            L   G +D A+ L 
Sbjct: 601 DRAFQIVSTMVK-NG-----CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLD-ARSLS 653

Query: 277 LQMKDKNI-------------------------NPDVVTYNSLIHGFCYANDWNEANCLL 311
            +  D N                           P    YN L+ G C      EA+ L 
Sbjct: 654 SEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 713

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+  G+ PD    ++I +  CK  K D     ++L++     P+ +++  ++ G    
Sbjct: 714 QDMVKHGLFPDKAISSII-EHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 772

Query: 372 GRVNHAKEL 380
           GRV  A++L
Sbjct: 773 GRVQEAQKL 781



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 102/236 (43%), Gaps = 42/236 (17%)

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           +E+ +++       +   G + +   YSTL+  L +     VA  ++  M N     G  
Sbjct: 70  SENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLG-- 127

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAK----------------------------------- 273
                + Y T+++ LCK GFV  A+                                   
Sbjct: 128 ----GIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAF 183

Query: 274 ELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +F +M K+++  P+ VTY+ LIHG C A    EA  L  EM+++G QP   T+ V++  
Sbjct: 184 RVFEKMSKEESCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA 243

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            C  G  D+A ++L+ M  +   PN  T++ L+D  C  G++  A  +F  M   G
Sbjct: 244 KCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 299



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 54/304 (17%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL--FKRLNSTGLFPDLYTY 145
           NEA  +   M+     P  +T   L+ G     +  +T LSL   +R+   G  P++YTY
Sbjct: 496 NEANAMLGKMMKYGLVPSVVTHTILIEG---HCRAGETALSLKMLERMKQAGCSPNVYTY 552

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN  C  GRV     +L  +     +P+   +  L+K      R+  A  + + +  
Sbjct: 553 TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVK 612

Query: 206 FGCKPNVITYSTLINGL-------------------------------CRTGHTIV---- 230
            GC+PN   YS L++G                                C + H       
Sbjct: 613 NGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDV 672

Query: 231 --ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL + +E+     K GV   P    Y  ++ GLCKEG + +A +L   M    + PD 
Sbjct: 673 DHALKIRDEIK----KCGV---PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK 725

Query: 289 VTYNSLIHGFCYANDWNEANCL--LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
              +S+I  +C    ++  NCL  +  ++D    P   ++  ++  L   G++ EA +L+
Sbjct: 726 AI-SSIIEHYCKTCKYD--NCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLV 782

Query: 347 ELMI 350
             ++
Sbjct: 783 SDLV 786


>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g22960, mitochondrial-like [Cucumis sativus]
          Length = 717

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 103/288 (35%), Positives = 155/288 (53%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L     +   +     L + + +   FP L TYN L+   CK  +V+   +    +
Sbjct: 287 TYNPLINGFCQKGLFVEAFDLVEEMVNRRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDM 346

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L+S FTPD V+F SL+ G C    I EA  LF +LK     P VITY+TLI+GLC  G+ 
Sbjct: 347 LKSKFTPDIVSFNSLLYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYL 406

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL L +EM +  G F     P+  TYT +++G  K G+V  A+  F +M  K + PD 
Sbjct: 407 DAALRLKKEMTD-QGLF-----PDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDR 460

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN+ I G     D + A  +  EM+  G  PDV+T+NV +  LC+ G  +EA  LLE 
Sbjct: 461 FAYNTRIVGEMKIADTSVAFSMQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLEN 520

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+  G+ P+  T++++++GF   G +  A+E+F  M S G   +V +Y
Sbjct: 521 MVSDGLIPDHVTYTSIINGFVKNGHLRKAREVFNEMLSKGVAPSVVTY 568



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 13/300 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF +FD  L  R   P + ++N L   L    + D  L L K +   GLFPD++TY I
Sbjct: 372 SEAFLLFD-ELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTI 430

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT---KLK 204
           L+N   K+G VS        +L     PD  A+ + I G   E +I + +  F+   ++ 
Sbjct: 431 LVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVG---EMKIADTSVAFSMQEEML 487

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A G  P+VITY+  ++ LC+ G+   A +L E M +     G++  P+ VTYT+II+G  
Sbjct: 488 AAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSD----GLI--PDHVTYTSIINGFV 541

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G + KA+E+F +M  K + P VVTY  LIH        + A     +M+++ V  +V+
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVI 601

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N I++ LC   +MDEA +  + M  +G+ PN  +++ L++  C  G    A  L+  M
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREM 661



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 96/332 (28%), Positives = 160/332 (48%), Gaps = 12/332 (3%)

Query: 69  FLKERCKS-SGQGDITAITPNEAFC--IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
           ++ ER  S    G +  +      C  +FD M+      P + + N +   L        
Sbjct: 140 WVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIR-NGLLPDVKNCNRILRVLRDENLLSK 198

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLI 184
             +++  +   G+ P + TYN +++ +CK GRV     +L  +  R C+ P+ V +  L+
Sbjct: 199 AKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQERGCY-PNDVTYNVLV 257

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            GL  +  + +A  L  ++   G   +  TY+ LING C+ G  + A +L EEM N    
Sbjct: 258 NGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMVNRRA- 316

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 P   TY T++ GLCK   V   +  F  M      PD+V++NSL++G+C     
Sbjct: 317 -----FPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSLLYGYCRTGCI 371

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  L  E+  + + P V+T+N ++  LC  G +D A RL + M  +G+ P+  T++ L
Sbjct: 372 SEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGLFPDIFTYTIL 431

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++G    G V+ A+  F  M S G K   F+Y
Sbjct: 432 VNGCFKLGYVSMARGFFNEMLSKGLKPDRFAY 463



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 152/337 (45%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M+N R + P L+++N L   L K      V   F  +  +   PD+ ++N L
Sbjct: 303 EAFDLVEEMVN-RRAFPTLSTYNTLMYGLCKWVQVTGVRLRFSDMLKSKFTPDIVSFNSL 361

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +C+ G +S  F++   +      P  + + +LI GLC    +  A  L  ++   G 
Sbjct: 362 LYGYCRTGCISEAFLLFDELKCRDLVPTVITYNTLIHGLCMWGYLDAALRLKKEMTDQGL 421

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK------------------------ 244
            P++ TY+ L+NG  + G+  +A   F EM +   K                        
Sbjct: 422 FPDIFTYTILVNGCFKLGYVSMARGFFNEMLSKGLKPDRFAYNTRIVGEMKIADTSVAFS 481

Query: 245 -----FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY   +  LC++G  ++A +L   M    + PD VTY S+I+GF 
Sbjct: 482 MQEEMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFV 541

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 +A  +  EM+ +GV P VVT+ V++        +D A      M+ + V  N  
Sbjct: 542 KNGHLRKAREVFNEMLSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVI 601

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ +++G C+T R++ A + F  ME  G     FSY
Sbjct: 602 TYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSY 638



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 1/104 (0%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF  F  ML  +  P  + ++N +   L  T+  D     F  +   G+ P+ ++Y ILI
Sbjct: 584 AFMYFSKMLE-KSVPANVITYNAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILI 642

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
           N  C MG       +   +L     PD+   +  +K L  + ++
Sbjct: 643 NESCNMGYWEEALRLYREMLDRKIQPDSFTHSVFLKNLHRDYQV 686



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 1/132 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ ML+ +   P + ++ +L    A  +  D     F ++    +  ++ TYN +IN  
Sbjct: 552 VFNEMLS-KGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITYNAIINGL 610

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C   R+   +     +      P+  ++T LI   C      EA  L+ ++     +P+ 
Sbjct: 611 CMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEALRLYREMLDRKIQPDS 670

Query: 213 ITYSTLINGLCR 224
            T+S  +  L R
Sbjct: 671 FTHSVFLKNLHR 682


>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
          Length = 883

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 151/308 (49%), Gaps = 6/308 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F+ M       P   ++++L   L +    +    L + +   G  P   TY +L
Sbjct: 247 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 306

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C +G       +L  +      P+   +T LI  LC E +I EA  +F K+   G 
Sbjct: 307 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 366

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P +IT++ LING C+ G  + A  L   M  GN      CKPN  TY  +++GLC+   
Sbjct: 367 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCRVSK 420

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             KA  L  ++ D  + PD VTYN L+ GFC     N A  +   M   G++PD  TF  
Sbjct: 421 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTA 480

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK G++++A+ +L  M+ +G++ +  TF+ L+DG C  G+      LF +M    
Sbjct: 481 LIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENR 540

Query: 389 CKHTVFSY 396
           C  T  ++
Sbjct: 541 CLTTAHTF 548



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/327 (28%), Positives = 159/327 (48%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L   L +    +    +F+++   GL P + T+N LIN +CK G V   F +
Sbjct: 333 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 392

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +    P+   +  L++GLC  S+  +A  L  ++   G  P+ +TY+ L++G C+
Sbjct: 393 LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCK 452

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +A N+F  M +         +P+  T+T +IDGLCK G +++A  +   M  K I
Sbjct: 453 EGQLNMAFNIFNSMNSAG------LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 506

Query: 285 NPDVVTYNSLIHGFC---------------------------------YANDW--NEANC 309
           + D VT+ +LI G C                                    D+  NEAN 
Sbjct: 507 SLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANA 566

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +L +MM  G+ P VVT  ++++  C+ G+   + ++LE M   G +PN  T++ +++G C
Sbjct: 567 MLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC 626

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             GRV  A+ +  SM S G     F+Y
Sbjct: 627 NNGRVEEAETILFSMSSFGVSPNHFTY 653



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 47/336 (13%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L  R S P    ++ L  CLAK         +++R+ + G       Y  ++N  CK G 
Sbjct: 153 LGFRLSYP---CYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 209

Query: 158 VSHGFVVLGRILRSCF------------------------------------TPDAVAFT 181
           V    +   ++LR  F                                     P++V ++
Sbjct: 210 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYS 269

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            LI GLC   R+ EA  L  ++   GC+P+  TY+ LI   C  G T  A+ + +EMA  
Sbjct: 270 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 329

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C PN  TYT +ID LC+EG +++A  +F +M    + P ++T+N+LI+G+C  
Sbjct: 330 ------ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYC-K 382

Query: 302 NDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             W  +   L+ +M++G  +P++ T+N +M+ LC+  K  +A  LL  ++  G+ P+  T
Sbjct: 383 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVT 442

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ L+DGFC  G++N A  +F SM S G +   F++
Sbjct: 443 YNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTF 478



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   M      P   T   L+ G    +K Y   L L +R+   GL PD  TYNIL+
Sbjct: 389 AFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-LLRRVVDNGLLPDRVTYNILV 447

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FCK G+++  F +   +  +   PD   FT+LI GLC   R+ +A  +   +   G  
Sbjct: 448 DGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGIS 507

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + +T++ LI+G C+ G       LFE M          C     T+   +D L K+  +
Sbjct: 508 LDEVTFTALIDGHCKIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKDYKL 561

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A  +  +M    + P VVT+  LI G C A +   +  +L  M   G  P+V T+ +I
Sbjct: 562 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 621

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LC NG+++EA  +L  M   GV+PN  T++ L+      GR++ A ++  +M   GC
Sbjct: 622 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 681

Query: 390 K 390
           +
Sbjct: 682 Q 682



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 147/345 (42%), Gaps = 65/345 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L     K    +   ++F  +NS GL PD +T+  LI+  CK+GR+     +
Sbjct: 438 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 497

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC---------------AESRIM--------------- 194
           LG +++   + D V FT+LI G C                E+R +               
Sbjct: 498 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 557

Query: 195 -----EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                EA A+  K+  +G  P+V+T++ LI G CR G T ++L + E M          C
Sbjct: 558 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG------C 611

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN  TYT II+GLC  G V++A+ +   M    ++P+  TY  L+     A   + A  
Sbjct: 612 SPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQ 671

Query: 310 LLIEMMDQGVQPDVVTFNVIMD------------ELCKNGKMDEAS--------RLLELM 349
           ++  M+  G QP+   ++ ++              L   G +D  S          L   
Sbjct: 672 IVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNE 731

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           I +   P    ++ L+ G C  GR+  A +L   M     KH +F
Sbjct: 732 IKKCGVPTEDLYNFLVVGLCKEGRIIEADQLTQDM----VKHGLF 772



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 42/236 (17%)

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           +E+ +++       +   G + +   YSTL+  L +     VA  ++  M N     G  
Sbjct: 136 SENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLG-- 193

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAK----------------------------------- 273
                + Y T+++ LCK GFV  A+                                   
Sbjct: 194 ----GIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAF 249

Query: 274 ELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +F +M K++N  P+ VTY+ LIHG C A    EA  L  EM+++G QP   T+ V++  
Sbjct: 250 RVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA 309

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            C  G  D+A ++L+ M  +   PN  T++ L+D  C  G++  A  +F  M   G
Sbjct: 310 KCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 365



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 125/284 (44%), Gaps = 30/284 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL--FKRLNSTGLFPDLYTY 145
           NEA  +   M+     P  +T   L+ G     +  +T LSL   +R+   G  P++YTY
Sbjct: 562 NEANAMLGKMMKYGLVPSVVTHTILIEG---HCRAGETALSLKMLERMKQAGCSPNVYTY 618

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN  C  GRV     +L  +     +P+   +  L+K      R+  A  + + +  
Sbjct: 619 TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVK 678

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLF------------EE-----MANGNGKFGVV 248
            GC+PN   YS L++G   +   I A  L             EE     ++N   K GV 
Sbjct: 679 NGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSNEIKKCGV- 737

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P    Y  ++ GLCKEG + +A +L   M    + PD    +S+I  +C    ++  N
Sbjct: 738 --PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDKAI-SSIIEHYCKTCKYD--N 792

Query: 309 CL--LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           CL  +  ++D    P   ++  ++  L   G++ EA +L+  ++
Sbjct: 793 CLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLVSDLV 836


>gi|38605763|emb|CAE05864.3| OSJNBa0044K18.6 [Oryza sativa Japonica Group]
          Length = 902

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 142/262 (54%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++NLL   L           L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 626 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 685

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R       V +T+LI  L  + ++ E   LF +    G +P+++ Y+ LIN    +G
Sbjct: 686 NMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 745

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  +  EM            P+ VTY T++ GLC  G VD+A++L  +M ++ I P
Sbjct: 746 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQP 799

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTYN+LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 800 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 859

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
           + M+  G+ P+ ST+ +L++G 
Sbjct: 860 KEMVENGITPDDSTYISLIEGL 881



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD ML      P    +N L G        DT L    R+   G+   + TYN+
Sbjct: 572 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 631

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++     GR +  + ++  +      PD   +  LI G C E  + +A  +F  +   G
Sbjct: 632 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 691

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  V+TY+ LI  L + G       LF+E      + G+  +P+ V Y  +I+     G
Sbjct: 692 VRATVVTYTALIYALSKKGQVQETDKLFDEAV----RRGI--RPDLVLYNALINSHSTSG 745

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+  +M+ K I PD VTYN+L+ G C     +EA  L+ EM ++G+QPD+VT+N
Sbjct: 746 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLVTYN 805

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++      G + +A R+   M+ +G NP   T++ L+ G C  G+ + A+ +   M   
Sbjct: 806 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 865

Query: 388 G 388
           G
Sbjct: 866 G 866



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 9/302 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKM 155
           +L   P P  +T +N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 510 LLRQMPRPNAVT-YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 568

Query: 156 GRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 569 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 628

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ L++ L   G    A  L EEM  G G       P+  TY  +I+G CKEG V KA E
Sbjct: 629 YNLLVHALFMDGRGTEAYELVEEMG-GKG-----LAPDVFTYNILINGHCKEGNVKKALE 682

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  M  + +   VVTY +LI+         E + L  E + +G++PD+V +N +++   
Sbjct: 683 IFENMSRRGVRATVVTYTALIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 742

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            +G +D A  ++  M  + + P+  T++TLM G CL GRV+ A++L   M   G +  + 
Sbjct: 743 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTERGIQPDLV 802

Query: 395 SY 396
           +Y
Sbjct: 803 TY 804



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/210 (30%), Positives = 101/210 (48%), Gaps = 27/210 (12%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGN--------------GKFGVVCK--------- 250
           T++ ++  LC  G    AL L  +M   N              G+               
Sbjct: 490 TFNIMLRHLCSAGKPARALELLRQMPRPNAVTYNTVIAGFCSRGRVQAALDIMREMRERG 549

Query: 251 ---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNE 306
              PN  TY T+I G CK G VD+A ++F +M  K  + P+ V YN+LI G+C     + 
Sbjct: 550 GIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDT 609

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A      M+++GV   V T+N+++  L  +G+  EA  L+E M  +G+ P+  T++ L++
Sbjct: 610 ALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILIN 669

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G V  A E+F +M   G + TV +Y
Sbjct: 670 GHCKEGNVKKALEIFENMSRRGVRATVVTY 699



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M   R   P L ++N L    +        L +   + + G  P L TYN 
Sbjct: 783 DEARKLIDEMTE-RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 841

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           LI   CK G+      ++  ++ +  TPD   + SLI+GL  E
Sbjct: 842 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 884


>gi|296081530|emb|CBI20053.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 104/336 (30%), Positives = 156/336 (46%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A+ ++  M  +R S    T FN++   L K             +   G  P++ +YN +I
Sbjct: 211 AWVLYAEMFRLRISSTVYT-FNIMVNVLCKEGKLKKAREFIGFMEGLGFKPNVVSYNTII 269

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +   G +     +L  +      PD+  + SLI G+C E R+ EA+ LF K+   G  
Sbjct: 270 HGYSSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLV 329

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANG------------------NGKFGVVCK- 250
           PN +TY+TLI+G C  G    A +  +EM                      G+ G     
Sbjct: 330 PNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDM 389

Query: 251 ----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     P+ +TY  +I+G  + G   KA +L  +M  K I P  VTY SLI+    
Sbjct: 390 IKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSR 449

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
            N   EA+ L  +++DQGV PDV+ FN ++D  C NG ++ A  LL+ M  + V P+  T
Sbjct: 450 RNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDRKSVPPDEVT 509

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           F+TLM G C  G+V  A+ L   M+  G K    SY
Sbjct: 510 FNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISY 545



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 91/279 (32%), Positives = 150/279 (53%), Gaps = 7/279 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF   D M+  +   P ++++NLL   L           + K +   G+ PD  TYNILI
Sbjct: 351 AFSYRDEMVK-KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 409

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N + + G     F +   +L     P  V +TSLI  L   +R+ EA  LF K+   G  
Sbjct: 410 NGYSRCGNAKKAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 469

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VI ++ +++G C  G+   A  L +EM   +        P+ VT+ T++ G C+EG V
Sbjct: 470 PDVIMFNAMVDGHCANGNVERAFMLLKEMDRKS------VPPDEVTFNTLMQGRCREGKV 523

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A+ L  +MK + I PD ++YN+LI G+    D  +A  +  EM+  G  P ++T+N +
Sbjct: 524 EEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKDAFRVRDEMLSIGFNPTLLTYNAL 583

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +  LCKN + D A  LL+ M+ +G++P+ ST+ +L++G 
Sbjct: 584 IKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 622



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 161/320 (50%), Gaps = 12/320 (3%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           S +G+I       A  I D M  ++   P   ++  L   + K    +    LF ++   
Sbjct: 273 SSRGNIEG-----ARRILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 326

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P+  TYN LI+ +C  G +   F     +++    P    +  L+  L  E R+ EA
Sbjct: 327 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 386

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +  +++  G  P+ ITY+ LING  R G+   A +L  EM +         +P  VTY
Sbjct: 387 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKKAFDLHNEMLSKG------IEPTHVTY 440

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T++I  L +   + +A +LF ++ D+ ++PDV+ +N+++ G C   +   A  LL EM  
Sbjct: 441 TSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMVDGHCANGNVERAFMLLKEMDR 500

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + V PD VTFN +M   C+ GK++EA  LL+ M  RG+ P+  +++TL+ G+   G +  
Sbjct: 501 KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKRRGIKPDHISYNTLISGYGRRGDIKD 560

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  +   M S+G   T+ +Y
Sbjct: 561 AFRVRDEMLSIGFNPTLLTY 580



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 65/253 (25%), Positives = 115/253 (45%), Gaps = 6/253 (2%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            +++L+   C++ R    F     +      P       ++      +R+  A  L+ ++
Sbjct: 159 VFDLLVRVCCELRRADEAFKCFYMMKEKGIVPKIETCNDMLSLFLKLNRMEMAWVLYAEM 218

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                   V T++ ++N LC+ G    A      M       G+  KPN V+Y TII G 
Sbjct: 219 FRLRISSTVYTFNIMVNVLCKEGKLKKAREFIGFME------GLGFKPNVVSYNTIIHGY 272

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
              G ++ A+ +   M+ K I PD  TY SLI G C      EA+ L  +M++ G+ P+ 
Sbjct: 273 SSRGNIEGARRILDAMRVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNA 332

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT+N ++D  C  G ++ A    + M+ +G+ P+ ST++ L+    + GR+  A ++   
Sbjct: 333 VTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKE 392

Query: 384 MESMGCKHTVFSY 396
           M   G      +Y
Sbjct: 393 MRKKGIIPDAITY 405


>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
           mitochondrial [Vitis vinifera]
          Length = 876

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 151/308 (49%), Gaps = 6/308 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F+ M       P   ++++L   L +    +    L + +   G  P   TY +L
Sbjct: 224 EAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVL 283

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C +G       +L  +      P+   +T LI  LC E +I EA  +F K+   G 
Sbjct: 284 IKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGL 343

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P +IT++ LING C+ G  + A  L   M  GN      CKPN  TY  +++GLC+   
Sbjct: 344 CPGIITFNALINGYCKEGWVVSAFQLLSVMEKGN------CKPNIRTYNELMEGLCRVSK 397

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             KA  L  ++ D  + PD VTYN L+ GFC     N A  +   M   G++PD  TF  
Sbjct: 398 SYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTA 457

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK G++++A+ +L  M+ +G++ +  TF+ L+DG C  G+      LF +M    
Sbjct: 458 LIDGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENR 517

Query: 389 CKHTVFSY 396
           C  T  ++
Sbjct: 518 CLTTAHTF 525



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/327 (29%), Positives = 160/327 (48%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L   L +    +    +F+++   GL P + T+N LIN +CK G V   F +
Sbjct: 310 PNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEGWVVSAFQL 369

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +    P+   +  L++GLC  S+  +A  L  ++   G  P+ +TY+ L++G C+
Sbjct: 370 LSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCK 429

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +A N+F  M N  G      +P+  T+T +IDGLCK G +++A  +   M  K I
Sbjct: 430 EGQLNMAFNIFNSM-NSAG-----LEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGI 483

Query: 285 NPDVVTYNSLIHGFC---------------------------------YANDW--NEANC 309
           + D VT+ +LI G C                                    D+  NEAN 
Sbjct: 484 SLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGKDYKLNEANA 543

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +L +MM  G+ P VVT  ++++  C+ G+   + ++LE M   G +PN  T++ +++G C
Sbjct: 544 MLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTIIINGLC 603

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             GRV  A+ +  SM S G     F+Y
Sbjct: 604 NNGRVEEAETILFSMSSFGVSPNHFTY 630



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 98/336 (29%), Positives = 163/336 (48%), Gaps = 47/336 (13%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L  R S P    ++ L  CLAK         +++R+ + G       Y  ++N  CK G 
Sbjct: 130 LGFRLSYP---CYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLGGIDYRTVVNALCKNGF 186

Query: 158 VSHGFVVLGRILRSCF------------------------------------TPDAVAFT 181
           V    +   ++LR  F                                     P++V ++
Sbjct: 187 VQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYS 246

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            LI GLC   R+ EA  L  ++   GC+P+  TY+ LI   C  G T  A+ + +EMA  
Sbjct: 247 ILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATK 306

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C PN  TYT +ID LC+EG +++A  +F +M    + P ++T+N+LI+G+C  
Sbjct: 307 ------ACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCPGIITFNALINGYC-K 359

Query: 302 NDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             W  +   L+ +M++G  +P++ T+N +M+ LC+  K  +A  LL  ++  G+ P+  T
Sbjct: 360 EGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVT 419

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ L+DGFC  G++N A  +F SM S G +   F++
Sbjct: 420 YNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTF 455



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 147/301 (48%), Gaps = 7/301 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   M      P   T   L+ G    +K Y   L L +R+   GL PD  TYNIL+
Sbjct: 366 AFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFL-LLRRVVDNGLLPDRVTYNILV 424

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FCK G+++  F +   +  +   PD   FT+LI GLC   R+ +A  +   +   G  
Sbjct: 425 DGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGILGSMVKKGIS 484

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + +T++ LI+G C+ G       LFE M          C     T+   +D L K+  +
Sbjct: 485 LDEVTFTALIDGHCKIGKAKDVCFLFENMVENR------CLTTAHTFNCFLDALGKDYKL 538

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A  +  +M    + P VVT+  LI G C A +   +  +L  M   G  P+V T+ +I
Sbjct: 539 NEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPNVYTYTII 598

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LC NG+++EA  +L  M   GV+PN  T++ L+      GR++ A ++  +M   GC
Sbjct: 599 INGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVKNGC 658

Query: 390 K 390
           +
Sbjct: 659 Q 659



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/382 (24%), Positives = 159/382 (41%), Gaps = 115/382 (30%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L     K    +   ++F  +NS GL PD +T+  LI+  CK+GR+     +
Sbjct: 415 PDRVTYNILVDGFCKEGQLNMAFNIFNSMNSAGLEPDGFTFTALIDGLCKLGRLEQANGI 474

Query: 165 LGRILRSCFTPDAVAFTSLIKGLC---------------AESRIM--------------- 194
           LG +++   + D V FT+LI G C                E+R +               
Sbjct: 475 LGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCLTTAHTFNCFLDALGK 534

Query: 195 -----EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                EA A+  K+  +G  P+V+T++ LI G CR G T ++L + E M          C
Sbjct: 535 DYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERMKQAG------C 588

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY------------------ 291
            PN  TYT II+GLC  G V++A+ +   M    ++P+  TY                  
Sbjct: 589 SPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQ 648

Query: 292 -----------------NSLIHGFCYAN---------------------DWNEANCL--- 310
                            ++L+ GF  +N                     + N+ NCL   
Sbjct: 649 IVSTMVKNGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSH 708

Query: 311 LIEMMDQ-------------GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +  +MD              GV P    +N ++  LCK G++ EA +L + M+  G+ P+
Sbjct: 709 VFRLMDVDHALKIRDEIKKCGV-PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPD 767

Query: 358 TSTFSTLMDGFCLTGRVNHAKE 379
            +  S++++ +C T + ++  E
Sbjct: 768 KA-ISSIIEHYCKTCKYDNCLE 788



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 128/309 (41%), Gaps = 45/309 (14%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN     L K    +   ++  ++   GL P + T+ ILI   C+ G  +    +L R+
Sbjct: 524 TFNCFLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLKMLERM 583

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++  +P+   +T +I GLC   R+ EA  +   + +FG  PN  TY+ L+    + G  
Sbjct: 584 KQAGCSPNVYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRL 643

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG------------LCKEGFVDKAKELF 276
             A  +   M   NG     C+PN+  Y+ ++ G            L   G +D A+ L 
Sbjct: 644 DRAFQIVSTMVK-NG-----CQPNSHIYSALLSGFVLSNTAIGARALSSTGDLD-ARSLS 696

Query: 277 LQMKDKNI-------------------------NPDVVTYNSLIHGFCYANDWNEANCLL 311
            +  D N                           P    YN L+ G C      EA+ L 
Sbjct: 697 SEENDNNCLSSHVFRLMDVDHALKIRDEIKKCGVPTEDLYNFLVVGLCKEGRIIEADQLT 756

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+  G+ PD    ++I +  CK  K D     ++L++     P+ +++  ++ G    
Sbjct: 757 QDMVKHGLFPDKAISSII-EHYCKTCKYDNCLEFMKLVLDNKFVPSFASYCWVIHGLRNE 815

Query: 372 GRVNHAKEL 380
           GRV  A++L
Sbjct: 816 GRVQEAQKL 824



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/236 (26%), Positives = 102/236 (43%), Gaps = 42/236 (17%)

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
           +E+ +++       +   G + +   YSTL+  L +     VA  ++  M N     G  
Sbjct: 113 SENGVVKLMGALDGMTELGFRLSYPCYSTLLMCLAKLNMGFVAFLVYRRMVNEGFVLG-- 170

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAK----------------------------------- 273
                + Y T+++ LCK GFV  A+                                   
Sbjct: 171 ----GIDYRTVVNALCKNGFVQAAEMFCCKVLRLGFGLDTHVCTSLVLANCRRDDLGEAF 226

Query: 274 ELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +F +M K++N  P+ VTY+ LIHG C A    EA  L  EM+++G QP   T+ V++  
Sbjct: 227 RVFEKMSKEENCRPNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKA 286

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            C  G  D+A ++L+ M  +   PN  T++ L+D  C  G++  A  +F  M   G
Sbjct: 287 KCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHG 342



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 73/304 (24%), Positives = 125/304 (41%), Gaps = 54/304 (17%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL--FKRLNSTGLFPDLYTY 145
           NEA  +   M+     P  +T   L+ G     +  +T LSL   +R+   G  P++YTY
Sbjct: 539 NEANAMLGKMMKYGLVPSVVTHTILIEG---HCRAGETALSLKMLERMKQAGCSPNVYTY 595

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I+IN  C  GRV     +L  +     +P+   +  L+K      R+  A  + + +  
Sbjct: 596 TIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVSTMVK 655

Query: 206 FGCKPNVITYSTLINGL-------------------------------CRTGHTIV---- 230
            GC+PN   YS L++G                                C + H       
Sbjct: 656 NGCQPNSHIYSALLSGFVLSNTAIGARALSSTGDLDARSLSSEENDNNCLSSHVFRLMDV 715

Query: 231 --ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL + +E+     K GV   P    Y  ++ GLCKEG + +A +L   M    + PD 
Sbjct: 716 DHALKIRDEIK----KCGV---PTEDLYNFLVVGLCKEGRIIEADQLTQDMVKHGLFPDK 768

Query: 289 VTYNSLIHGFCYANDWNEANCL--LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
              +S+I  +C    ++  NCL  +  ++D    P   ++  ++  L   G++ EA +L+
Sbjct: 769 AI-SSIIEHYCKTCKYD--NCLEFMKLVLDNKFVPSFASYCWVIHGLRNEGRVQEAQKLV 825

Query: 347 ELMI 350
             ++
Sbjct: 826 SDLV 829


>gi|356529971|ref|XP_003533559.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Glycine max]
          Length = 693

 Score =  168 bits (425), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 148/281 (52%), Gaps = 7/281 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P   + N +   + +    +   +LF  + + G+ P+  +Y +++  +CK+G V     
Sbjct: 164 APSTKTLNWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDR 223

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            LG ++   F  D    + +++  C +  +  A   F +    G +PN+I ++ +I GLC
Sbjct: 224 WLGGMIERGFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLC 283

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDK 282
           + G    A  + EEM  G G      KPN  T+T +IDGLCK+G+ +KA  LFL++ + +
Sbjct: 284 KRGSVKQAFEMLEEMV-GRG-----WKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSE 337

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N  P+V+TY ++I G+C     N A  LL  M +QG+ P+  T+  ++D  CK G  + A
Sbjct: 338 NHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERA 397

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             L+ +M   G +PN  T++ ++DG C  GRV  A ++  S
Sbjct: 398 YELMNVMNEEGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKS 438



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 138/260 (53%), Gaps = 5/260 (1%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G   D  T ++++  FC+ G V+       R       P+ + FT +I+GLC    + +A
Sbjct: 232 GFVVDNATLSLIVREFCEKGFVTRALWYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQA 291

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +  ++   G KPNV T++ LI+GLC+ G T  A  LF ++           KPN +TY
Sbjct: 292 FEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENH-----KPNVLTY 346

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T +I G C++  +++A+ L  +MK++ + P+  TY +LI G C A ++  A  L+  M +
Sbjct: 347 TAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNVMNE 406

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  P+V T+N I+D LCK G++ EA ++L+     G++ +  T++ L+   C    +  
Sbjct: 407 EGFSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISEHCKQAEIKQ 466

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  LF  M   G +  + SY
Sbjct: 467 ALVLFNKMVKSGIQPDIHSY 486



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 165/339 (48%), Gaps = 18/339 (5%)

Query: 60  VKDRASLEQFLKERCKSSGQGDIT-AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
           V D A+L   ++E C+   +G +T A+     FC     + +RP+   L +F  +   L 
Sbjct: 234 VVDNATLSLIVREFCE---KGFVTRALWYFRRFC----EMGLRPN---LINFTCMIEGLC 283

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDA 177
           K         + + +   G  P++YT+  LI+  CK G     F +  +++RS    P+ 
Sbjct: 284 KRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSENHKPNV 343

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           + +T++I G C + ++  A  L +++K  G  PN  TY+TLI+G C+ G+   A  L   
Sbjct: 344 LTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPNTNTYTTLIDGHCKAGNFERAYELMNV 403

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M N  G       PN  TY  I+DGLCK+G V +A ++        ++ D VTY  LI  
Sbjct: 404 M-NEEG-----FSPNVCTYNAIVDGLCKKGRVQEAYKVLKSGFRNGLDADKVTYTILISE 457

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C   +  +A  L  +M+  G+QPD+ ++  ++   C+  +M E+    E  +  G+ P 
Sbjct: 458 HCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEAVRFGLVPT 517

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T+++++ G+C  G +  A + F  M   GC     +Y
Sbjct: 518 NKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITY 556



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 127/279 (45%), Gaps = 30/279 (10%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++  F ++GRV     ++  +      P       ++K +     +  A  LF ++ A G
Sbjct: 138 MVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTLNWVVKIVTEMGLVEYAENLFDEMCARG 197

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-----GNGKFGVVC------------- 249
            +PN ++Y  ++ G C+ G+ + +      M        N    ++              
Sbjct: 198 VQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIERGFVVDNATLSLIVREFCEKGFVTRAL 257

Query: 250 -----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      +PN + +T +I+GLCK G V +A E+  +M  +   P+V T+ +LI G 
Sbjct: 258 WYFRRFCEMGLRPNLINFTCMIEGLCKRGSVKQAFEMLEEMVGRGWKPNVYTHTALIDGL 317

Query: 299 CYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           C      +A  L ++++  +  +P+V+T+  ++   C++ KM+ A  LL  M  +G+ PN
Sbjct: 318 CKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRDEKMNRAEMLLSRMKEQGLAPN 377

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+T++TL+DG C  G    A EL   M   G    V +Y
Sbjct: 378 TNTYTTLIDGHCKAGNFERAYELMNVMNEEGFSPNVCTY 416



 Score = 77.8 bits (190), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 107/257 (41%), Gaps = 44/257 (17%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L     K       L LF ++  +G+ PD+++Y  LI  FC+  R+    +     
Sbjct: 450 TYTILISEHCKQAEIKQALVLFNKMVKSGIQPDIHSYTTLIAVFCREKRMKESEMFFEEA 509

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +R    P    +TS+I G C E  +  A   F ++   GC  + ITY  LI+GLC     
Sbjct: 510 VRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYGALISGLC----- 564

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                                               K+  +D+A+ L+  M +K + P  
Sbjct: 565 ------------------------------------KQSKLDEARCLYDAMIEKGLTPCE 588

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT  +L + +C  +D   A  +++E +++ +   V T N ++ +LC   K+  A+     
Sbjct: 589 VTRVTLAYEYCKIDDGCSA-MVVLERLEKKLW--VRTVNTLVRKLCSERKVGMAALFFHK 645

Query: 349 MILRGVNPNTSTFSTLM 365
           ++ +  N N  T +  M
Sbjct: 646 LLDKDPNVNRVTIAAFM 662



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 57/242 (23%), Positives = 98/242 (40%), Gaps = 19/242 (7%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D+ +    + E CK   Q +I      +A  +F+ M+      P + S+  L     + K
Sbjct: 447 DKVTYTILISEHCK---QAEI-----KQALVLFNKMVK-SGIQPDIHSYTTLIAVFCREK 497

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
                   F+     GL P   TY  +I  +C+ G +        R+       D++ + 
Sbjct: 498 RMKESEMFFEEAVRFGLVPTNKTYTSMICGYCREGNLRLALKFFHRMSDHGCASDSITYG 557

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI GLC +S++ EA  L+  +   G  P  +T  TL    C+      A+ + E +   
Sbjct: 558 ALISGLCKQSKLDEARCLYDAMIEKGLTPCEVTRVTLAYEYCKIDDGCSAMVVLERLEK- 616

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                   K    T  T++  LC E  V  A   F ++ DK+ N + VT  + +   CY 
Sbjct: 617 --------KLWVRTVNTLVRKLCSERKVGMAALFFHKLLDKDPNVNRVTIAAFMTA-CYE 667

Query: 302 ND 303
           ++
Sbjct: 668 SN 669



 Score = 50.4 bits (119), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 23/182 (12%)

Query: 210 PNVITYS---TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           PN +T+    T++  L     ++VAL+ F   A  + KF    +  T  Y      L   
Sbjct: 71  PNSLTHDQAVTIVASLASDAGSMVALSFFN-WAIASSKF----RHFTRLYIACAASLISN 125

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
              +KA E+                  ++  F       EA  ++IEM +QG+ P   T 
Sbjct: 126 KNFEKAHEVM---------------QCMVKSFAEIGRVKEAIEMVIEMHNQGLAPSTKTL 170

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++  + + G ++ A  L + M  RGV PN  ++  ++ G+C  G V  +      M  
Sbjct: 171 NWVVKIVTEMGLVEYAENLFDEMCARGVQPNCVSYRVMVVGYCKLGNVLESDRWLGGMIE 230

Query: 387 MG 388
            G
Sbjct: 231 RG 232


>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17140-like [Glycine max]
          Length = 875

 Score =  168 bits (425), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 161/309 (52%), Gaps = 4/309 (1%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P     ++  ML  R +P   T FNLL   L +++ +D  L LF+++   G  P+ +T  
Sbjct: 131 PGFVSWLYSDMLAARVAPQTYT-FNLLIHSLCESRAFDHALQLFEKMPQKGCCPNEFTLG 189

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           IL+   C+ G V     ++     SC   + V + +L+   C E    EA  L  ++   
Sbjct: 190 ILVRGLCRAGLVKQALELVNNN-NSCRIANRVVYNTLVSRFCREEMNNEAERLVERMNEL 248

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+V+T+++ I+ LCR G  + A  +F +M   + + G+  +PN VT+  ++ G CK 
Sbjct: 249 GVLPDVVTFNSRISALCRAGKVMEASRIFRDM-QMDAELGLP-RPNVVTFNLMLKGFCKH 306

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A+ L   MK       +  YN  + G     +  EA  +L EM+ +G++P+  T+
Sbjct: 307 GMMGDARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGIEPNAYTY 366

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N++MD LC+N  + +A  L++LM+  GV P+T  +STL+ G+C  G+V  AK +   M  
Sbjct: 367 NIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTLLHGYCSRGKVFEAKSVLHEMIR 426

Query: 387 MGCKHTVFS 395
            GC+   ++
Sbjct: 427 NGCQPNTYT 435



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 168/359 (46%), Gaps = 53/359 (14%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M+     P   T +N++   L +         L   +   G++PD   Y+ L
Sbjct: 346 EARLVLDEMVAKGIEPNAYT-YNIMMDGLCRNHMLSDARGLMDLMMRNGVYPDTVAYSTL 404

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C  G+V     VL  ++R+   P+     +L+  L  E R +EA  +  K+     
Sbjct: 405 LHGYCSRGKVFEAKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCY 464

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMA--------NGNGKFGVV--------CKPN 252
           +P+ +T + ++NGLCR G    A  +  EM          GN    ++        C P+
Sbjct: 465 QPDTVTCNIVVNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPD 524

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA----- 307
            +TYTT+I+GLCK G +++AK+ F++M  KN+ PD VTY++ I  FC     + A     
Sbjct: 525 GITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLK 584

Query: 308 --------------NCLLI----------------EMMDQGVQPDVVTFNVIMDELCKNG 337
                         N L++                EM ++G+ PD+ T+N I+  LC+ G
Sbjct: 585 DMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGG 644

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF-VSMESMGCKHTVFS 395
           K  +A  LL  M+ +G++PN S+F  L+  F  +     A ELF V++   G K  ++S
Sbjct: 645 KAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALYS 703



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/274 (26%), Positives = 117/274 (42%), Gaps = 28/274 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L   L K    +     F  + +  L PD  TY+  I  FCK G++S  F V
Sbjct: 523 PDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKISSAFRV 582

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + R+  +     + +LI GL + ++I E   L  ++K  G  P++ TY+ +I  LC 
Sbjct: 583 LKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCE 642

Query: 225 TGHTIVALNLFEEMANG------------------NGKFGVVCKPNTVT----------Y 256
            G    A++L  EM +                   +  F V C+   V           Y
Sbjct: 643 GGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELFEVALNICGRKEALY 702

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + + + L   G + +AKELF    D+ +      Y  LI   C      +AN LL +++D
Sbjct: 703 SLMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLID 762

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +G   D  +F  ++D L K G   +A  L + M+
Sbjct: 763 KGYGFDHASFMPVIDGLSKRGNKRQADELAKRMM 796



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/286 (24%), Positives = 116/286 (40%), Gaps = 42/286 (14%)

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
           N +   PD  TY  LIN  CK+GR+         +L     PD+V + + I   C + +I
Sbjct: 517 NVSNCLPDGITYTTLINGLCKVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQGKI 576

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
             A  +   ++  GC   + TY+ LI GL           L +EM            P+ 
Sbjct: 577 SSAFRVLKDMERNGCSKTLQTYNALILGLGSNNQIFEIYGLKDEMKEKG------ISPDI 630

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            TY  II  LC+ G    A  L  +M DK I+P+V ++  LI  F  ++D+  A C L E
Sbjct: 631 CTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFKILIKAFSKSSDFKVA-CELFE 689

Query: 314 M-----------------------------------MDQGVQPDVVTFNVIMDELCKNGK 338
           +                                   +D+ +      +  ++  LC++ +
Sbjct: 690 VALNICGRKEALYSLMFNELLAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDER 749

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + +A+ LL  +I +G   + ++F  ++DG    G    A EL   M
Sbjct: 750 LADANSLLYKLIDKGYGFDHASFMPVIDGLSKRGNKRQADELAKRM 795



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 111/285 (38%), Gaps = 22/285 (7%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  + + F+   CK   QG I++     AF +   M         L ++N L   L    
Sbjct: 559 DSVTYDTFIWSFCK---QGKISS-----AFRVLKDM-ERNGCSKTLQTYNALILGLGSNN 609

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
               +  L   +   G+ PD+ TYN +I C C+ G+      +L  +L    +P+  +F 
Sbjct: 610 QIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAISLLHEMLDKGISPNVSSFK 669

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            LIK     S    A  LF ++    C      YS + N L   G    A  LFE     
Sbjct: 670 ILIKAFSKSSDFKVACELF-EVALNICGRKEALYSLMFNELLAGGQLSEAKELFEV---- 724

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                         Y  +I  LC++  +  A  L  ++ DK    D  ++  +I G    
Sbjct: 725 --SLDRYLTLKNFMYKDLIARLCQDERLADANSLLYKLIDKGYGFDHASFMPVIDGLSKR 782

Query: 302 NDWNEANCLLIEMMDQGVQ--PDVVTFN----VIMDELCKNGKMD 340
            +  +A+ L   MM+  ++  P   T++    VI  +L K+G  D
Sbjct: 783 GNKRQADELAKRMMELELEDRPVDRTYSNRKRVIPGKLLKDGGSD 827


>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Vitis vinifera]
          Length = 464

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 93/258 (36%), Positives = 139/258 (53%), Gaps = 11/258 (4%)

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           + +D +LS   +  +    PD+ TYN+LIN  C  G +   + V   +LR    P+ V F
Sbjct: 131 EKFDGILSGIDKFAT----PDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTF 186

Query: 181 TSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            +LI GLC +SR+ EA  L   + K F  KPN   Y++L+ GLCR     +A  L +EM 
Sbjct: 187 GTLISGLCGDSRLDEAFRLKEDMVKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMV 246

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
               +       ++  Y+T+I  L K G  D+   +  +M++    PD VTYN++I GFC
Sbjct: 247 ANKLRL------DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFC 300

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              D+  A  +L EM+ +G +PDV+++NVI+  LCK GK  EA+ L E M  RG  P+  
Sbjct: 301 NEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVG 360

Query: 360 TFSTLMDGFCLTGRVNHA 377
           ++  L DG C   + N A
Sbjct: 361 SYRILFDGLCEGMQFNEA 378



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 142/309 (45%), Gaps = 19/309 (6%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C S   GD        A+ +FD ML     P  +T F  L   L      D    L + +
Sbjct: 159 CSSGSLGD--------AWNVFDEMLRKHVCPNVVT-FGTLISGLCGDSRLDEAFRLKEDM 209

Query: 134 NST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                + P+ + Y  L+   C++  +S  F +   ++ +    D+  +++LI  L    R
Sbjct: 210 VKVFNVKPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYSTLIAALFKVGR 269

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKP 251
             E   +  +++  GCKP+ +TY+ +I+G C       A  + EEM A G       CKP
Sbjct: 270 KDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKG-------CKP 322

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + ++Y  II GLCKEG   +A +LF  M  +   PDV +Y  L  G C    +NEA  +L
Sbjct: 323 DVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFIL 382

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM+ +G  P   +    ++ LC+ G ++   ++L  ++ +G   +   +S  +   C  
Sbjct: 383 DEMVFKGYAPKSASKTKFVEALCQEGNLELLCKVLNSLV-KGNVIDGDAWSLAVSKVCKK 441

Query: 372 GRVNHAKEL 380
            ++++  EL
Sbjct: 442 EKLSNGSEL 450



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 107/223 (47%), Gaps = 5/223 (2%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           TPD   +  LI   C+   + +A  +F ++      PNV+T+ TLI+GLC       A  
Sbjct: 145 TPDVCTYNVLINACCSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFR 204

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           L E+M      F V  KPN   Y +++ GLC+   +  A EL  +M    +  D   Y++
Sbjct: 205 LKEDMVK---VFNV--KPNAFVYASLMKGLCRVNELSLAFELKKEMVANKLRLDSGIYST 259

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI         +E   +L EM + G +PD VT+N ++   C     + A  +LE M+ +G
Sbjct: 260 LIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKG 319

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             P+  +++ ++ G C  G+   A +LF  M   GC   V SY
Sbjct: 320 CKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSY 362


>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
 gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
          Length = 846

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 100/315 (31%), Positives = 156/315 (49%), Gaps = 49/315 (15%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           +P  +T FN L    +K   ++    L++ +N  GL P   T+N LI   C  GR+    
Sbjct: 422 APLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQ 481

Query: 163 VVL------GRILRSCFT----------------------------PDAVAFTSLIKGLC 188
           ++L      G  L + FT                            PD +AF++ I GLC
Sbjct: 482 LLLEHMVSKGYCLSTSFTICLDASFREGNAVCALKCWDDMGKLGLQPDFIAFSAYINGLC 541

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               + EA   F ++ A G  PN  TY+++I+ LCR G+   AL L + M       G+V
Sbjct: 542 RLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQN----GLV 597

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+  T   +IDGLC+EG ++    L L M    + PD VTYN++I+ +C A D N A 
Sbjct: 598 --PDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAM 655

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             + +M+  G +PD+ T+N+ M  LC N  +++A ++L+ ++  G  P++ T++TLMDG 
Sbjct: 656 NFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYNTLMDGI 715

Query: 369 C---------LTGRV 374
           C         LTGR+
Sbjct: 716 CSDVLDRAMILTGRL 730



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 160/370 (43%), Gaps = 65/370 (17%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M  +      +T FN+L    AKT   D   + ++ + + GL PD  T+NI+
Sbjct: 307 EARRLFDEMAQVGIQANTIT-FNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNII 365

Query: 149 INCFCKMGRVS---HGFVVLG-------------RILRSCFTPDA--------------- 177
                K G  +   H   + G             R+   C   DA               
Sbjct: 366 AAGAYKFGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLS 425

Query: 178 -VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F +LI     E    EA  L+  +   G  P+  T++ LI GLC  G    A  L E
Sbjct: 426 VTGFNALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLE 485

Query: 237 EMAN-------------------GN-----------GKFGVVCKPNTVTYTTIIDGLCKE 266
            M +                   GN           GK G+  +P+ + ++  I+GLC+ 
Sbjct: 486 HMVSKGYCLSTSFTICLDASFREGNAVCALKCWDDMGKLGL--QPDFIAFSAYINGLCRL 543

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            +V++A + F +M  + I P+  TYNS+I   C A +  EA  L   M   G+ PD+ T 
Sbjct: 544 DYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKLQQNMRQNGLVPDIYTS 603

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D LC+ GK++    LL  M   G+ P+T T++T+++ +C    +N A      M +
Sbjct: 604 NILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMNKMLA 663

Query: 387 MGCKHTVFSY 396
            GC+  +F+Y
Sbjct: 664 AGCEPDIFTY 673



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 143/310 (46%), Gaps = 39/310 (12%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           ++       ++F+ + + G  P L T+N +I  FC  G V     +LG +      P+  
Sbjct: 196 RSGEVHAAWNVFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVC 255

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           ++  LIKG C      +A  LF ++   GC+P V+TY+ L++ LC  G    A  LF+EM
Sbjct: 256 SYNILIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEM 315

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN------ 292
           A       V  + NT+T+  +IDG  K G +D+A   + +MK + + PD  T+N      
Sbjct: 316 AQ------VGIQANTITFNVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGA 369

Query: 293 -------SLIHG-------------------FCYANDWNEANCLLIEMMDQGVQPDVVTF 326
                   L+H                     C+    ++A  LL   ++QG    V  F
Sbjct: 370 YKFGHAAQLVHDHDMFGSHMLADGMDMLVCRLCWDCRLDDAWELLRGAIEQGAPLSVTGF 429

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++    K G  +EA  L  +M   G+ P++STF+ L+ G C  GR++ A+ L   M S
Sbjct: 430 NALIAAYSKEGLHEEAFELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVS 489

Query: 387 MG-CKHTVFS 395
            G C  T F+
Sbjct: 490 KGYCLSTSFT 499



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/240 (32%), Positives = 120/240 (50%), Gaps = 9/240 (3%)

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           + ++ F   G  +    VL R+ RS  TP   A  +L++ L     +  A  +F ++ A 
Sbjct: 154 LALHAFLAAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAAR 213

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P++ T++ +I G C  G   VA  L   M    G+FG+V  PN  +Y  +I G C  
Sbjct: 214 GPRPSLATFNAMILGFCHRGLVRVASGLLGIM----GEFGIV--PNVCSYNILIKGHCVF 267

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G+   A +LF +M      P VVTYN L+   C+     EA  L  EM   G+Q + +TF
Sbjct: 268 GWSRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITF 327

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG---FCLTGRVNHAKELFVS 383
           NV++D   K G+MD+A      M  RG+ P++ TF+ +  G   F    ++ H  ++F S
Sbjct: 328 NVLIDGYAKTGRMDQACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFGS 387



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 71/205 (34%), Positives = 106/205 (51%), Gaps = 6/205 (2%)

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           +    A     EA  + T+++  G  P++   + L+  L R+G    A N+FEEMA   G
Sbjct: 156 LHAFLAAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMA-ARG 214

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                 +P+  T+  +I G C  G V  A  L   M +  I P+V +YN LI G C    
Sbjct: 215 P-----RPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGW 269

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             +A  L  EM   G +P VVT+N+++D LC  G+M EA RL + M   G+  NT TF+ 
Sbjct: 270 SRDAFKLFEEMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNV 329

Query: 364 LMDGFCLTGRVNHAKELFVSMESMG 388
           L+DG+  TGR++ A   +  M++ G
Sbjct: 330 LIDGYAKTGRMDQACAAYREMKARG 354



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 108/233 (46%), Gaps = 7/233 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F+     L +  + +     F  + + G+ P+ +TYN +I+  C+ G ++    +
Sbjct: 528 PDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGNMTEALKL 587

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + ++   PD      LI GLC E ++     L   + + G  P+ +TY+T+IN  CR
Sbjct: 588 QQNMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCR 647

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+N   +M          C+P+  TY   +  LC    +++A ++  ++     
Sbjct: 648 AKDMNSAMNFMNKM------LAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGC 701

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            PD VTYN+L+ G C ++  + A  L   ++    QP+ +T NV +   CK G
Sbjct: 702 PPDSVTYNTLMDGIC-SDVLDRAMILTGRLIKMAFQPNTITLNVFLSHFCKQG 753



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 124/295 (42%), Gaps = 38/295 (12%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            L +  R+  +G  P L     L+    + G V   + V   +      P    F ++I 
Sbjct: 168 ALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGPRPSLATFNAMIL 227

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C    +  A+ L   +  FG  PNV +Y+ LI G C  G +  A  LFEEM       
Sbjct: 228 GFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKLFEEMHRSG--- 284

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
              C+P  VTY  ++D LC EG + +A+ LF +M    I  + +T+N LI G+      +
Sbjct: 285 ---CEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQANTITFNVLIDGYAKTGRMD 341

Query: 306 EANCLLIEMMDQGVQPDVVTFNVI----------------------------MD----EL 333
           +A     EM  +G+ PD  TFN+I                            MD     L
Sbjct: 342 QACAAYREMKARGLVPDSCTFNIIAAGAYKFGHAAQLVHDHDMFGSHMLADGMDMLVCRL 401

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           C + ++D+A  LL   I +G   + + F+ L+  +   G    A EL+  M  +G
Sbjct: 402 CWDCRLDDAWELLRGAIEQGAPLSVTGFNALIAAYSKEGLHEEAFELYRIMNKLG 456



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 107/226 (47%), Gaps = 17/226 (7%)

Query: 99  NMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           NMR +   P + + N+L   L +    + V +L   + S GL PD  TYN +IN +C+  
Sbjct: 590 NMRQNGLVPDIYTSNILIDGLCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAK 649

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            ++     + ++L +   PD   +   +  LC+   + +A  +  +L A GC P+ +TY+
Sbjct: 650 DMNSAMNFMNKMLAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVAMGCPPDSVTYN 709

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKF-GVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           TL++G+C         ++ +      G+   +  +PNT+T    +   CK+GF  +A   
Sbjct: 710 TLMDGICS--------DVLDRAMILTGRLIKMAFQPNTITLNVFLSHFCKQGFGKRALMW 761

Query: 276 FLQMKDKNINPDVVTYNSL------IHGFCYANDWNEANCLLIEMM 315
             ++++ +   D  T N +      +    +AN+ +   CL +E +
Sbjct: 762 AEKLREDSFVFDDATRNIIDWARRELEDDPHANNEDIERCLFLEFL 807



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 32/93 (34%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           WN    +  EM  +G +P + TFN ++   C  G +  AS LL +M   G+ PN  +++ 
Sbjct: 204 WN----VFEEMAARGPRPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNI 259

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ G C+ G    A +LF  M   GC+ TV +Y
Sbjct: 260 LIKGHCVFGWSRDAFKLFEEMHRSGCEPTVVTY 292



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 46/102 (45%)

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           +H F  A    EA  +L  +   G  P +     ++  L ++G++  A  + E M  RG 
Sbjct: 156 LHAFLAAGMAAEALDVLTRVRRSGKTPSLSALAALLRLLFRSGEVHAAWNVFEEMAARGP 215

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+ +TF+ ++ GFC  G V  A  L   M   G    V SY
Sbjct: 216 RPSLATFNAMILGFCHRGLVRVASGLLGIMGEFGIVPNVCSY 257


>gi|410109889|gb|AFV61024.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           camara]
          Length = 431

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 390



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++  A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTY 425



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHAPSVVTYNVLMNG 431



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 431


>gi|242047668|ref|XP_002461580.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
 gi|241924957|gb|EER98101.1| hypothetical protein SORBIDRAFT_02g005000 [Sorghum bicolor]
          Length = 532

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 94/254 (37%), Positives = 141/254 (55%), Gaps = 5/254 (1%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           R  S  + P   TY ILI+C C +G ++  F  LG+I+++    +A++FT +++ LCAE 
Sbjct: 3   RAGSKKVAPTTVTYTILISCCCYVGCLNLAFAALGQIIKTGLRANAISFTPILRTLCAEK 62

Query: 192 RIMEAAALFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
           R  +A  +  +     GC P+V +Y+ L+ GLC       A++L   MA      G  C 
Sbjct: 63  RTSDAMNIVIRWTPKLGCTPDVFSYTVLLKGLCDEKKCEEAVDLIHMMAED----GDHCP 118

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           PN V+YTT+I G  KE  V KA  LF +M D+ I PDVVT NS+I G C     ++A  +
Sbjct: 119 PNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEEV 178

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           L +M D+ + PD  T+N ++     +G++ EA R+L+ M   G  PN  T+S L+D  C 
Sbjct: 179 LRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCK 238

Query: 371 TGRVNHAKELFVSM 384
            G    A+E+  SM
Sbjct: 239 FGGHTEAREILNSM 252



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/338 (29%), Positives = 164/338 (48%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A+ +F  ML+ R  PP + + N +   L K +  D    + +++    + PD  TYN 
Sbjct: 138 GKAYTLFCEMLD-RGIPPDVVTCNSIIDGLCKVQAMDKAEEVLRQMFDKHIMPDCTTYNS 196

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ +   G++     +L ++ R    P+ V ++ LI  LC      EA  +   +    
Sbjct: 197 LVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLCKFGGHTEAREILNSMIQSR 256

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NG--------NGKFGVVCK-------- 250
             PNV TY  L++G    G  +   NL + M  NG        N +     K        
Sbjct: 257 GNPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNGVRPDHHIFNIQIYAYVKCGRLDEAM 316

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P+ ++Y T+IDGLCK G +D A   F QM D  ++PD+V + +LIHGF
Sbjct: 317 LTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTNLIHGF 376

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                W +A  L  EMMD+G++P VV F  ++D+L K GK+ EA  L +LM +  V PN 
Sbjct: 377 SMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIASVKPNV 436

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++ ++ G+ L G+++   +L   M S+G K    ++
Sbjct: 437 VSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTF 474



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 151/302 (50%), Gaps = 23/302 (7%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M+  R +P   T   LL G   K    + + +L   +   G+ PD + +NI 
Sbjct: 244 EAREILNSMIQSRGNPNVATYGGLLHGYATKGDLVE-MNNLIDLMVQNGVRPDHHIFNIQ 302

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + K GR+    +   ++ +    PD +++ ++I GLC   R+  A + F ++   G 
Sbjct: 303 IYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGL 362

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+++ ++ LI+G    G    A  LF EM +         +P  V +TT+ID L KEG 
Sbjct: 363 SPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRG------IRPTVVVFTTMIDKLFKEGK 416

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +AK LF  M   ++ P+VV+YN++IHG+  A   +E   LL +M+  G++P+ VTFN 
Sbjct: 417 VTEAKTLFDLMPIASVKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNT 476

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D+                M+  G+ P+ +T +TL+D  C  GR+     LF  M S  
Sbjct: 477 LLDD----------------MLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKA 520

Query: 389 CK 390
            K
Sbjct: 521 AK 522



 Score =  137 bits (346), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 135/293 (46%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + S+  +     K        +LF  +   G+ PD+ T N +I+  CK+  +     
Sbjct: 118 PPNVVSYTTVIHGFFKEDEVGKAYTLFCEMLDRGIPPDVVTCNSIIDGLCKVQAMDKAEE 177

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL ++      PD   + SL+ G  +  ++ EA  +  ++   G  PN +TYS LI+ LC
Sbjct: 178 VLRQMFDKHIMPDCTTYNSLVHGYLSSGQLKEAVRILKQMSRHGQPPNGVTYSMLIDCLC 237

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A  +   M    G       PN  TY  ++ G   +G + +   L   M    
Sbjct: 238 KFGGHTEAREILNSMIQSRG------NPNVATYGGLLHGYATKGDLVEMNNLIDLMVQNG 291

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD   +N  I+ +      +EA     +M  QG+ PD++++  ++D LCK G++D A 
Sbjct: 292 VRPDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAM 351

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                MI  G++P+   F+ L+ GF + G+   A+ELF  M   G + TV  +
Sbjct: 352 SQFCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVF 404



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 104/244 (42%), Gaps = 25/244 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN+      K    D  +  F ++   GL PD+ +Y  +I+  CK+GR+      
Sbjct: 294 PDHHIFNIQIYAYVKCGRLDEAMLTFNKMRQQGLMPDIISYGTMIDGLCKIGRLDAAMSQ 353

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++    +PD V FT+LI G     +  +A  LF ++   G +P V+ ++T+I+ L +
Sbjct: 354 FCQMIDDGLSPDIVVFTNLIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFK 413

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA------------ 272
            G    A  LF+ M   +       KPN V+Y  II G    G +D+             
Sbjct: 414 EGKVTEAKTLFDLMPIAS------VKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGL 467

Query: 273 -------KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
                    L   M    + PDV T N+LI   C      +   L  EM+ +  + D VT
Sbjct: 468 KPNAVTFNTLLDDMLSMGLKPDVATCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVT 527

Query: 326 FNVI 329
            N+I
Sbjct: 528 ENII 531



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 95/218 (43%), Gaps = 14/218 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA   F+ M   +   P + S+  +   L K    D  +S F ++   GL PD+  +  
Sbjct: 313 DEAMLTFNKM-RQQGLMPDIISYGTMIDGLCKIGRLDAAMSQFCQMIDDGLSPDIVVFTN 371

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F   G+      +   ++     P  V FT++I  L  E ++ EA  LF  +    
Sbjct: 372 LIHGFSMYGKWEKAEELFYEMMDRGIRPTVVVFTTMIDKLFKEGKVTEAKTLFDLMPIAS 431

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC-------------KPNTV 254
            KPNV++Y+ +I+G    G     L L ++M +   K   V              KP+  
Sbjct: 432 VKPNVVSYNAIIHGYFLAGKLDEVLKLLDDMLSVGLKPNAVTFNTLLDDMLSMGLKPDVA 491

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           T  T+ID  C++G ++    LF +M  K    D VT N
Sbjct: 492 TCNTLIDSCCEDGRIEDVLTLFREMLSKAAKTDTVTEN 529


>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 870

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 158/292 (54%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF-V 163
           P   +FNLL   L ++   D    LF +++  G  P+ +T  IL+  FC+ GR       
Sbjct: 149 PETYTFNLLIQSLCESNALDHARELFDKMSEKGCQPNKFTVGILVRGFCRAGRTKQALEF 208

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V G++  +    + V + +L+   C +    EA  L  ++   G  P+V+T+++ I+ LC
Sbjct: 209 VDGKMGGNV---NRVVYNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALC 265

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G    A  +F +M   +G+ G+  KPN VT+  ++ G C+EG +++A+ L   MK   
Sbjct: 266 RAGKVFEASRIFRDMQM-DGELGLP-KPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGG 323

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
               + +YN+ + G        E   +L EM++ G++P++ ++N++MD LC+N  M +A 
Sbjct: 324 NFVSLESYNTWLLGLLRNGKLLEGRSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDAR 383

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           RL++LM+  GV P+T T++TL+ G+C  G+V  AK +   M   GC    ++
Sbjct: 384 RLMDLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYT 435



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/360 (28%), Positives = 168/360 (46%), Gaps = 54/360 (15%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E   + D M+      P + S+N++   L +         L   + S G++PD  TY  L
Sbjct: 346 EGRSVLDEMVE-NGIEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTTL 404

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +C  G+V     +L  ++R    P+     +L+  L  E R  EA  +  K+     
Sbjct: 405 LHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEKSY 464

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM----ANGNGKFGVVCK------------PN 252
           + + +T + ++NGLCR G    A  +  EM     N  GK   V              P+
Sbjct: 465 QLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPD 524

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA----------N 302
            +TYTT+I+GLCK G +++AK+ F++M  KN++PD VTY++ +  FC             
Sbjct: 525 VITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLK 584

Query: 303 DWNEANC-------------------------LLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           D     C                         L+ EM ++G+ PD+ T+N +++ LC+ G
Sbjct: 585 DMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGG 644

Query: 338 KMDEASRLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELF-VSMESMGCKHTVFS 395
           K  +A+ LL  M+ +G V+PN S+F  L+  FC +G    A ELF V++   G K  ++S
Sbjct: 645 KTKDATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYS 704



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 138/287 (48%), Gaps = 18/287 (6%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L     K    D    L +R+   GL PD+ T+N  I+  C+ G+V        RI 
Sbjct: 222 YNTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEA----SRIF 277

Query: 170 RSCF--------TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           R            P+ V F  ++KG C E  + EA +L   +K  G   ++ +Y+T + G
Sbjct: 278 RDMQMDGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLG 337

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L R G  +   ++ +EM   NG      +PN  +Y  ++DGLC+   +  A+ L   M  
Sbjct: 338 LLRNGKLLEGRSVLDEMVE-NG-----IEPNIYSYNIVMDGLCRNHMMLDARRLMDLMVS 391

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD VTY +L+HG+C      EA  +L EM+ +G  P+  T N +++ L K G+  E
Sbjct: 392 NGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSE 451

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           A  +L+ M  +    +T T + +++G C  G +  A E+   M + G
Sbjct: 452 AEEMLQKMNEKSYQLDTVTCNIVVNGLCRNGELEKASEVVSEMWTDG 498



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 150/313 (47%), Gaps = 30/313 (9%)

Query: 107 LTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           L S+N  L G L   K  +   S+   +   G+ P++Y+YNI+++  C+   +     ++
Sbjct: 328 LESYNTWLLGLLRNGKLLEG-RSVLDEMVENGIEPNIYSYNIVMDGLCRNHMMLDARRLM 386

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             ++ +   PD V +T+L+ G C++ ++ EA A+  ++   GC PN  T +TL+N L + 
Sbjct: 387 DLMVSNGVYPDTVTYTTLLHGYCSKGKVFEAKAILNEMIRKGCHPNTYTCNTLLNSLWKE 446

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  + ++M   + +       +TVT   +++GLC+ G ++KA E+  +M     N
Sbjct: 447 GRKSEAEEMLQKMNEKSYQL------DTVTCNIVVNGLCRNGELEKASEVVSEMWTDGTN 500

Query: 286 ----------------------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
                                 PDV+TY +LI+G C      EA    IEMM + + PD 
Sbjct: 501 SLGKENPVAGLVNSIHNVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDS 560

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           VT++  +   CK GK+  A R+L+ M   G +    T+++L+ G    G++     L   
Sbjct: 561 VTYDTFVLNFCKQGKISSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDE 620

Query: 384 MESMGCKHTVFSY 396
           M   G    + +Y
Sbjct: 621 MRERGIHPDICTY 633



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 145/357 (40%), Gaps = 64/357 (17%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I + M+     P   T  N L   L K         + +++N      D  T NI+
Sbjct: 416 EAKAILNEMIRKGCHPNTYTC-NTLLNSLWKEGRKSEAEEMLQKMNEKSYQLDTVTCNIV 474

Query: 149 INCFCKMGRVSHGFVVLGRILR----------------------SCFTPDAVAFTSLIKG 186
           +N  C+ G +     V+  +                        S   PD + +T+LI G
Sbjct: 475 VNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLING 534

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC   ++ EA   F ++ A    P+ +TY T +   C+ G    AL + ++M   NG   
Sbjct: 535 LCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKISSALRVLKDMER-NG--- 590

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             C     TY ++I GL  +G + +   L  +M+++ I+PD+ TYN++I+  C      +
Sbjct: 591 --CSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKD 648

Query: 307 ANCLLIEMMDQGV-QPDVVTFNVIMDELCKNG---------------------------- 337
           A  LL EM+D+GV  P+V +F +++   CK+G                            
Sbjct: 649 ATSLLHEMLDKGVVSPNVSSFKILIKAFCKSGDFKVACELFDVALSVCGHKEALYSLMFN 708

Query: 338 ------KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
                 K+ +A  L E  + R +      +  L+D  C  GR++ A  L   +   G
Sbjct: 709 ELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKG 765



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 134/287 (46%), Gaps = 6/287 (2%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           N+  + P + ++  L   L K    +     F  + +  L PD  TY+  +  FCK G++
Sbjct: 517 NVSTNVPDVITYTTLINGLCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQGKI 576

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           S    VL  + R+  +     + SLI GL ++ +I E   L  +++  G  P++ TY+ +
Sbjct: 577 SSALRVLKDMERNGCSKTLQTYNSLILGLGSKGQIFEMYGLMDEMRERGIHPDICTYNNM 636

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           IN LC  G T  A +L  EM +     GVV  PN  ++  +I   CK G    A ELF  
Sbjct: 637 INCLCEGGKTKDATSLLHEMLDK----GVVS-PNVSSFKILIKAFCKSGDFKVACELF-D 690

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           +           Y+ + +        ++A  L    +++ +      +  ++D+LCK+G+
Sbjct: 691 VALSVCGHKEALYSLMFNELLAGGKLSDAKELFEASLERSLLSKNFMYEDLIDKLCKDGR 750

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +D+A  LL+ +I +G   + S+F  ++DG    G    A EL   ME
Sbjct: 751 LDDAHGLLQKLIDKGYCFDHSSFIPVIDGLSKRGNKQQADELGRIME 797



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/231 (22%), Positives = 94/231 (40%), Gaps = 17/231 (7%)

Query: 86  TPNEAFCIFDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDL 142
           +  + F ++  M  MR     P + ++N +  CL +        SL   +   G+  P++
Sbjct: 607 SKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATSLLHEMLDKGVVSPNV 666

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            ++ ILI  FCK G       +    L  C   +A+ ++ +   L A  ++ +A  LF  
Sbjct: 667 SSFKILIKAFCKSGDFKVACELFDVALSVCGHKEAL-YSLMFNELLAGGKLSDAKELFEA 725

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
                       Y  LI+ LC+ G    A  L +++ +    F      +  ++  +IDG
Sbjct: 726 SLERSLLSKNFMYEDLIDKLCKDGRLDDAHGLLQKLIDKGYCF------DHSSFIPVIDG 779

Query: 263 LCKEGFVDKAKELF----LQMKDKNINPDVVTYNSLIHGFCYAN---DWNE 306
           L K G   +A EL     L ++DK  +      NS+     + +   DW +
Sbjct: 780 LSKRGNKQQADELGRIMELALEDKTSDRTYRNGNSIFRRKLHKDGGSDWQD 830


>gi|410109895|gb|AFV61027.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           urticoides]
          Length = 412

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 98  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 157

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 158 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFD 217

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 218 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 271

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 272 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 331

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 332 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTY 371



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 120 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 179

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++  A  LF ++   G  PN +T++TLI+G C
Sbjct: 180 LKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGLFDEMLVKGLVPNGVTFTTLIDGHC 239

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 240 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 293

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 294 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 353

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 354 KMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTY 406



 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 156 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDGANGL 215

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 216 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 275

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 276 KGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 329

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 330 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTGTYTMIVNEFCKKGDVWKGSK 389

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 390 LLKEMQRDGHAPSVVTYNVLMNG 412



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 247 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 305

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 306 DGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 365

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 366 PDTGTYTMIVNEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNVLMNG 412


>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
          Length = 476

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 105/325 (32%), Positives = 157/325 (48%), Gaps = 18/325 (5%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTG 137
           + P EA  + D  L  R +P      N     LA+              ++LF R  S  
Sbjct: 43  LRPEEAHDLLDE-LQRRGTPVLERDLNGFLAALARAPSSAACRSGPALAVALFNRAASRA 101

Query: 138 -----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                L P  YTY IL++C  +  R        G++LR+    D +    L+KG C   R
Sbjct: 102 QGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDIIIANHLLKGFCEAKR 161

Query: 193 IMEA-AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             EA   L  +    GC P+V +Y+ L+  LC  G +  A +L   MA G    G VC P
Sbjct: 162 TDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLRMMAEG----GAVCSP 217

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + V YTT+IDG  KEG V+KA +LF +M  + I PD VTY+S++H  C A   ++A   L
Sbjct: 218 DVVAYTTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARAMDKAEAFL 277

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +M+++GV P+  T+N ++      G+  EA R+ + M    +  +    +TLM   C  
Sbjct: 278 RQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNILLDVVNLNTLMGSLCKY 337

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G++  A+++F +M   G    VFSY
Sbjct: 338 GKIKEARDVFDTMAMKGQNPNVFSY 362



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 152/302 (50%), Gaps = 13/302 (4%)

Query: 87  PNEAFCIFDYMLNMRPSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           P  A  +F+   +    P    P   ++ +L  C  +    +  L+ F +L  TGL  D+
Sbjct: 87  PALAVALFNRAASRAQGPRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGLRVDI 146

Query: 143 YTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              N L+  FC+  R      ++L R       PD  ++  L+K LC + +  +A  L  
Sbjct: 147 IIANHLLKGFCEAKRTDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLR 206

Query: 202 KLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            +   G  C P+V+ Y+T+I+G  + G    A +LF+EM     + G+   P+ VTY+++
Sbjct: 207 MMAEGGAVCSPDVVAYTTVIDGFFKEGDVNKACDLFKEMV----QRGI--PPDFVTYSSV 260

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +  LCK   +DKA+    QM +K + P+  TYN+LI+G+     W EA  +  EM    +
Sbjct: 261 VHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNI 320

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
             DVV  N +M  LCK GK+ EA  + + M ++G NPN  +++ +++G+   G +    +
Sbjct: 321 LLDVVNLNTLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTD 380

Query: 380 LF 381
           LF
Sbjct: 381 LF 382



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 68/243 (27%), Positives = 114/243 (46%), Gaps = 9/243 (3%)

Query: 111 NLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           N L     + K  D  L  L  R    G  PD+ +YNIL+   C  G+      +L  + 
Sbjct: 150 NHLLKGFCEAKRTDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLRMMA 209

Query: 170 R--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
              +  +PD VA+T++I G   E  + +A  LF ++   G  P+ +TYS++++ LC+   
Sbjct: 210 EGGAVCSPDVVAYTTVIDGFFKEGDVNKACDLFKEMVQRGIPPDFVTYSSVVHALCKARA 269

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A     +M N     GV+  PN  TY  +I G    G   +A  +F +M+  NI  D
Sbjct: 270 MDKAEAFLRQMVNK----GVL--PNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNILLD 323

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VV  N+L+   C      EA  +   M  +G  P+V ++ ++++     G + + + L +
Sbjct: 324 VVNLNTLMGSLCKYGKIKEARDVFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFD 383

Query: 348 LMI 350
           LM+
Sbjct: 384 LML 386



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+     N+A  +F  M+  R  PP   +++ +   L K +  D   +  +++ + G+
Sbjct: 232 EGDV-----NKACDLFKEMVQ-RGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGV 285

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI  +   G+      V   + R     D V   +L+  LC   +I EA  
Sbjct: 286 LPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRHNILLDVVNLNTLMGSLCKYGKIKEARD 345

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           +F  +   G  PNV +Y+ ++NG    G  +   +LF+ M     + G+
Sbjct: 346 VFDTMAMKGQNPNVFSYTIMLNGYATKGCLVDMTDLFDLMLGDAQQQGI 394


>gi|218195055|gb|EEC77482.1| hypothetical protein OsI_16315 [Oryza sativa Indica Group]
          Length = 455

 Score =  167 bits (424), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 141/262 (53%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++NLL   L           L + +   GL PD++TYNILIN  CK G V     +  
Sbjct: 179 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFE 238

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R       V +TSLI  L  + ++ E   LF +    G +P+++ Y+ LIN    +G
Sbjct: 239 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 298

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  +  EM            P+ VTY T++ GLC  G VD+A++L  +M  + I P
Sbjct: 299 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 352

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTYN+LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 353 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 412

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
           + M+  G+ P+ ST+ +L++G 
Sbjct: 413 KEMVENGITPDDSTYISLIEGL 434



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 89/301 (29%), Positives = 147/301 (48%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD ML      P    +N L G        DT L    R+   G+   + TYN+
Sbjct: 125 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 184

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++     GR +  + ++  +      PD   +  LI G C E  + +A  +F  +   G
Sbjct: 185 LVHALFMDGRGTEAYELVEEMGGKGLAPDVFTYNILINGHCKEGNVKKALEIFENMSRRG 244

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  V+TY++LI  L + G       LF+E      + G+  +P+ V Y  +I+     G
Sbjct: 245 VRATVVTYTSLIYALSKKGQVQETDKLFDEAV----RRGI--RPDLVLYNALINSHSTSG 298

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+  +M+ K I PD VTYN+L+ G C     +EA  L+ EM  +G+QPD+VT+N
Sbjct: 299 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 358

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++      G + +A R+   M+ +G NP   T++ L+ G C  G+ + A+ +   M   
Sbjct: 359 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 418

Query: 388 G 388
           G
Sbjct: 419 G 419



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/302 (30%), Positives = 149/302 (49%), Gaps = 9/302 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKM 155
           +L   P P  +T +N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 63  LLRQMPRPNAVT-YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 121

Query: 156 GRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 122 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 181

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ L++ L   G    A  L EEM  G G       P+  TY  +I+G CKEG V KA E
Sbjct: 182 YNLLVHALFMDGRGTEAYELVEEMG-GKG-----LAPDVFTYNILINGHCKEGNVKKALE 235

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  M  + +   VVTY SLI+         E + L  E + +G++PD+V +N +++   
Sbjct: 236 IFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 295

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            +G +D A  ++  M  + + P+  T++TLM G CL GRV+ A++L   M   G +  + 
Sbjct: 296 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLV 355

Query: 395 SY 396
           +Y
Sbjct: 356 TY 357



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++ ++  LC  G    AL L  +M           +PN VTY T+I G C  G V  A 
Sbjct: 43  TFNIMLRHLCSAGKPARALELLRQMP----------RPNAVTYNTVIAGFCSRGRVQAAL 92

Query: 274 ELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMD 331
           ++  +M+++  I P+  TY ++I G+C     +EA  +  EM+ +G V+P+ V +N ++ 
Sbjct: 93  DIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG 152

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             C  GK+D A    + M+ RGV    +T++ L+    + GR   A EL   M   G   
Sbjct: 153 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAP 212

Query: 392 TVFSY 396
            VF+Y
Sbjct: 213 DVFTY 217



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M   R   P L ++N L    +        L +   + + G  P L TYN 
Sbjct: 336 DEARKLIDEMTK-RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 394

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           LI   CK G+      ++  ++ +  TPD   + SLI+GL  E 
Sbjct: 395 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTED 438


>gi|297838419|ref|XP_002887091.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297332932|gb|EFH63350.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 568

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 92/288 (31%), Positives = 153/288 (53%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L   L K         +++++   G+FP+LYTYN ++N  CK GR    F +   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEM 294

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                + + V + +LI GLC E +  EA  +  ++K+ G  PN+ITY+TLI+G C  G  
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTLIDGFCGVGKL 354

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL+L  ++ +          P+ VTY  ++ G CK+G    A ++  +M+++ I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK 408

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +TY  LI  F   ++  +A  L   M + G+ PDV T++V++   C  G+M+EASRL +L
Sbjct: 409 ITYTILIDTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKL 468

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ + + PN   ++T++ G+C  G    A  LF  ME       V SY
Sbjct: 469 MVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 143/256 (55%), Gaps = 6/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI G C    I +A  LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEKAKDLF 221

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++  FG   N  TY+ LI+GL + G       ++E+M   +G F     PN  TY  ++
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQE-DGVF-----PNLYTYNCVM 275

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +  CK+G    A +LF +M+++ ++ ++VTYN+LI G C     NEAN ++ +M   G+ 
Sbjct: 276 NQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGIN 335

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+++T+N ++D  C  GK+ +A  L   +  RG++P+  T++ L+ GFC  G  + A ++
Sbjct: 336 PNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKV 395

Query: 381 FVSMESMGCKHTVFSY 396
              ME  G K +  +Y
Sbjct: 396 VKEMEERGIKPSKITY 411



 Score =  156 bits (395), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/294 (30%), Positives = 151/294 (51%), Gaps = 10/294 (3%)

Query: 94  FDYMLNMRP---SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           FD ++ +R    SP  +    L+ GC  K    +    LF  +   GL  + +TY +LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGC-CKRGEIEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
              K G    GF +  ++      P+   +  ++   C + R  +A  LF +++  G   
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEDGVFPNLYTYNCVMNQHCKDGRTKDAFKLFDEMRERGVSC 301

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N++TY+TLI GLCR      A  + ++M +          PN +TY T+IDG C  G + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKSDG------INPNLITYNTLIDGFCGVGKLG 355

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA  L   +K + ++P +VTYN L+ GFC   D + A  ++ EM ++G++P  +T+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKITYTILI 415

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           D   +   M++A +L   M   G+ P+  T+S L+ GFC+ G++N A  LF  M
Sbjct: 416 DTFARMDNMEKAIQLRSPMEELGLTPDVHTYSVLIHGFCIKGQMNEASRLFKLM 469



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 40/286 (13%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTP----------------------------- 175
           Y ++IN + +   +         ++   F P                             
Sbjct: 97  YEVMINAYVQSQSLDSSISYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWRFFNESK 156

Query: 176 -----DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                D  +F  +IKG C    I ++  L  +L+ FG  PNV+ Y+TLI+G C+ G    
Sbjct: 157 IKVDLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKRGEIEK 216

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A +LF EM    GKFG+V   N  TYT +I GL K G   +  E++ +M++  + P++ T
Sbjct: 217 AKDLFFEM----GKFGLVA--NEWTYTVLIHGLFKNGIKKQGFEMYEKMQEDGVFPNLYT 270

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN +++  C      +A  L  EM ++GV  ++VT+N ++  LC+  K +EA+++++ M 
Sbjct: 271 YNCVMNQHCKDGRTKDAFKLFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMK 330

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+NPN  T++TL+DGFC  G++  A  L   ++S G   ++ +Y
Sbjct: 331 SDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPSLVTY 376



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 78/276 (28%), Positives = 139/276 (50%), Gaps = 7/276 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M   R     + ++N L G L +    +    +  ++ S G+ P+L TYN L
Sbjct: 286 DAFKLFDEMRE-RGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSDGINPNLITYNTL 344

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC +G++     +   +     +P  V +  L+ G C +     A  +  +++  G 
Sbjct: 345 IDGFCGVGKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI 404

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ ITY+ LI+   R  +   A+ L   M     + G+   P+  TY+ +I G C +G 
Sbjct: 405 KPSKITYTILIDTFARMDNMEKAIQLRSPME----ELGLT--PDVHTYSVLIHGFCIKGQ 458

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A  LF  M  K + P+ V YN+++ G+C       A  L  EM ++ + P+V ++  
Sbjct: 459 MNEASRLFKLMVAKKLEPNKVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRY 518

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +++ LCK  K  EA  L+E MI  G++P+ S  + +
Sbjct: 519 MIEVLCKERKSKEAEGLVEKMIDTGIDPSDSILNLI 554


>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
          Length = 820

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 142/289 (49%), Gaps = 10/289 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L     +    D  L LF+ +      PD+YT+  L+   C  GR   G  +L +
Sbjct: 200 VSYAALIEGFCEAGRIDEALELFREMTQ----PDMYTHAALVKGLCDAGRGEEGLCMLQK 255

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +    + P   A+ +L+   C E +  EA  +  ++   G  P V+T + ++N  CR G 
Sbjct: 256 MKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGR 315

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ +FE M          C+PN  TY  I+ G C  G V KA  L  QM++  + PD
Sbjct: 316 MSGAVRVFESMRFKG------CEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPD 369

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTYN LI G C       A  LL  M   G+  D  T+NV++D LCK GK+DEA  L +
Sbjct: 370 VVTYNLLIRGQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFD 429

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  RG+ PN+ TF+T+++G C  G+ + A     +M S G     ++Y
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTY 478



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 142/308 (46%), Gaps = 32/308 (10%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL----FPDLY----------TYNIL 148
           SPPPL  F          + + ++L+ F R   T L    F  +Y          TYN L
Sbjct: 84  SPPPLRPFF--------DRPFRSLLTHFSRYALTPLMLRLFAHMYRHAPPAPTGATYNAL 135

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C+   + H    L  ++RS + PDA  F SLI G C   ++  A  LF K+   G 
Sbjct: 136 IRALCRRADLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLEVAHDLFCKMPFRGF 195

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + ++Y+ LI G C  G    AL LF EM           +P+  T+  ++ GLC  G 
Sbjct: 196 SQDAVSYAALIEGFCEAGRIDEALELFREMT----------QPDMYTHAALVKGLCDAGR 245

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++   +  +MK+    P    Y +L+  +C      EA  +L EM D G+ P VVT  +
Sbjct: 246 GEEGLCMLQKMKELGWRPTTRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTI 305

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++  C+ G+M  A R+ E M  +G  PN  T++ ++ GFC  G+V  A  L   M   G
Sbjct: 306 VVNAYCREGRMSGAVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECG 365

Query: 389 CKHTVFSY 396
            +  V +Y
Sbjct: 366 VEPDVVTY 373



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 23/354 (6%)

Query: 49  TAKLKESLRL----TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYM--LNMRP 102
             ++ E+L L    T  D  +    +K  C  +G+G+       E  C+   M  L  RP
Sbjct: 212 AGRIDEALELFREMTQPDMYTHAALVKGLC-DAGRGE-------EGLCMLQKMKELGWRP 263

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           +     ++  L     + +  +    +   +  +GL P + T  I++N +C+ GR+S   
Sbjct: 264 T---TRAYAALVDLWCREQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAV 320

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   +      P+   + ++++G C   ++ +A AL  +++  G +P+V+TY+ LI G 
Sbjct: 321 RVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQ 380

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C  GH   A  L   M  GNG        +  TY  +ID LCK G VD+A  LF  ++ +
Sbjct: 381 CIDGHIGSAFRLLRLM-EGNG-----LAADQYTYNVLIDALCKTGKVDEACSLFDGLEYR 434

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            I P+ VT+N++I+G C A  ++ A   L  M+  G  PD  T++  ++ LCK     E 
Sbjct: 435 GIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQEG 494

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              ++ M+ + V P+T  ++ +++          A  ++  M S GC   V +Y
Sbjct: 495 LFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTY 548



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 74/260 (28%), Positives = 129/260 (49%), Gaps = 6/260 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            + +F+ +   G  P+++TYN ++  FC  G+V     +L ++      PD V +  LI+
Sbjct: 319 AVRVFESMRFKGCEPNVWTYNAIVQGFCNAGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C +  I  A  L   ++  G   +  TY+ LI+ LC+TG    A +LF    +G    
Sbjct: 379 GQCIDGHIGSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLF----DGLEYR 434

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G+  +PN+VT+ T+I+GLCK G  D A      M      PD  TY+  I   C      
Sbjct: 435 GI--RPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSPFIENLCKTKGSQ 492

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           E    + EM+ + V+P  V + ++++ L        A+R+   M+ +G +P+  T++T +
Sbjct: 493 EGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQGCSPDVVTYTTSV 552

Query: 366 DGFCLTGRVNHAKELFVSME 385
             +C  GR++ A+ +   M+
Sbjct: 553 RAYCNEGRLDEAENVVTEMK 572



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/395 (21%), Positives = 148/395 (37%), Gaps = 93/395 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD  L  R   P   +FN +   L K   +D   +  + + S G  PD YTY+ 
Sbjct: 422 DEACSLFD-GLEYRGIRPNSVTFNTVINGLCKAGKFDVACTFLENMISAGYAPDTYTYSP 480

Query: 148 LINCFCKMGRVSHGFV-----------------------------------VLGRILRSC 172
            I   CK      G                                     + G+++   
Sbjct: 481 FIENLCKTKGSQEGLFFIDEMLQKDVKPSTVNYTIVINRLFNERNYGLATRIWGQMVSQG 540

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
            +PD V +T+ ++  C E R+ EA  + T++K      + + Y+TLI+G    G T  A+
Sbjct: 541 CSPDVVTYTTSVRAYCNEGRLDEAENVVTEMKKCRTIVDAMAYNTLIDGHTSIGQTDRAV 600

Query: 233 NLFEEMANGNGKFGVVCKPN---------------------------------------- 252
            + + M       GV   PN                                        
Sbjct: 601 TILKHMT------GVASMPNHFTFFILLRHLLQRRLAEHVPLKATSVWKTIELADVFELF 654

Query: 253 -----------TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                        TY +I++G  +E  +D+   L   MK++N+  +   YN+L++ FC  
Sbjct: 655 ELMKKNSVPSSARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKL 714

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
             +++A  LL  M+  G  P+++ +  ++  L   G+ D A  +      +  N +   +
Sbjct: 715 RMYSDAWALLCSMIGHGFLPNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVW 774

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             ++DGF   G  +   ++   +E M CK +  +Y
Sbjct: 775 KVIIDGFIRKGHADMCHDMISMLEQMKCKPSDETY 809



 Score = 58.2 bits (139), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 6/157 (3%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A  + S+++G   E R+ E  +L + +K      N   Y+ L+N  C+      A  L  
Sbjct: 666 ARTYLSILEGFSEERRLDEVTSLVSLMKEENLPLNEDIYNALVNCFCKLRMYSDAWALLC 725

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            M  G+G       PN + Y  ++ GL  EG  D+AKE+F   + K  N D + +  +I 
Sbjct: 726 SMI-GHGFL-----PNLIFYQYLLSGLTAEGQADRAKEIFRSSRWKEYNTDEIVWKVIID 779

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           GF      +  + ++  +     +P   T+ ++ +EL
Sbjct: 780 GFIRKGHADMCHDMISMLEQMKCKPSDETYAMLTEEL 816


>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Vitis vinifera]
          Length = 1011

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 86/280 (30%), Positives = 157/280 (56%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N++ G L + +  D  + L + +   GL PDLYTY+ILIN FC   R     ++
Sbjct: 248 PNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLM 307

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P+ + + +LI G   +  I +A  +  ++ A G + N+I ++TL+NG+C+
Sbjct: 308 LLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCK 367

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL + +EM       GV  +P++ TY+ +I+G C+   + +A EL  +MK + +
Sbjct: 368 AGKMEKALEIMQEMMEK----GV--EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKL 421

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P V+TY+ +I+G C   +    N +L EM+  G++P+ V +  +M    K G+++E+  
Sbjct: 422 APTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRM 481

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +LE M  +G+ P+   +++L+ GFC   R+  A+   + M
Sbjct: 482 ILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEM 521



 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 155/307 (50%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + D M   + +P  LT ++++   L +  +     ++ + +   GL P+   Y  L+
Sbjct: 409 AFELLDEMKKRKLAPTVLT-YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLM 467

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
               K GRV    ++L R+      PD   + SLI G C   R+ EA     ++     +
Sbjct: 468 TAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLR 527

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN  TY   I+G  + G   +A   F EM +     GV+  PN   YT +I+G CKEG V
Sbjct: 528 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLS----CGVL--PNVGIYTALIEGHCKEGNV 581

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A  +F  +  + +  DV TY+ LIHG       +EA  +  E+ ++G+ P+  T+N +
Sbjct: 582 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 641

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   CK G +D+AS+LLE M ++G+NP+  T++ L+DG C  G +  AK LF  +E  G 
Sbjct: 642 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 701

Query: 390 KHTVFSY 396
                +Y
Sbjct: 702 TPNCVTY 708



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 164/356 (46%), Gaps = 37/356 (10%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            ++  CK   +G++T     EAF +F ++L+ R     + ++++L   L++         
Sbjct: 571 LIEGHCK---EGNVT-----EAFSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFG 621

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +F  L   GL P+ +TYN LI+  CK G V     +L  +      PD V +  LI GLC
Sbjct: 622 IFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLC 681

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NG------ 241
               I  A  LF  ++  G  PN +TY+ +++G C++ +   A  L EEM   G      
Sbjct: 682 KAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAF 741

Query: 242 --NGKFGVVCK-------------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             N      CK                    +TV++ T+I+G CK G + +A  L  +M 
Sbjct: 742 IYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSFNTLIEGYCKSGKLQEANHLLEEMI 801

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K   P+ VTY SLI   C A    EA  L +EM ++ V P   T+  ++      G M 
Sbjct: 802 EKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMS 861

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E S L E M+ +G+ P+  T+  ++D +C  G V  A +L   +   G   +V +Y
Sbjct: 862 EVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNVMEACKLKDEILVKGMPMSVAAY 917



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 93/320 (29%), Positives = 151/320 (47%), Gaps = 12/320 (3%)

Query: 80  GDITAITPNEAFC-IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           GD+      E F  +FD M   +  P   T  N++     K  +      +   +   G 
Sbjct: 188 GDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMI-SAHCKVGNVKDAKRVLLEMGEKGC 246

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+L TYN++I   C+   +     +   ++     PD   +  LI G C E R  EA  
Sbjct: 247 SPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKL 306

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC--KPNTVTY 256
           +  ++   G KP  ITY+ LI+G  R G    A  + +EM        V C  + N + +
Sbjct: 307 MLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEM--------VACGIEANLIIW 358

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            T+++G+CK G ++KA E+  +M +K + PD  TY+ LI G C   +   A  LL EM  
Sbjct: 359 NTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKK 418

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P V+T++VI++ LC+ G +   + +L  M++ G+ PN   ++TLM      GRV  
Sbjct: 419 RKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEE 478

Query: 377 AKELFVSMESMGCKHTVFSY 396
           ++ +   M   G    VF Y
Sbjct: 479 SRMILERMREQGILPDVFCY 498



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 150/318 (47%), Gaps = 29/318 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +  L    AK    +    + +R+   G+ PD++ YN LI  FCK  R+      
Sbjct: 458 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 517

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+A  + + I G      +  A   F ++ + G  PNV  Y+ LI G C+
Sbjct: 518 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 577

Query: 225 TGHTIVALNLFE---------------EMANG---NGK----FGVVCK-------PNTVT 255
            G+   A ++F                 + +G   NGK    FG+  +       PN  T
Sbjct: 578 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFT 637

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y ++I G CK+G VDKA +L  +M  K INPD+VTYN LI G C A +   A  L  ++ 
Sbjct: 638 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 697

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+ P+ VT+  ++D  CK+     A +LLE M+LRGV P+   ++ +++  C   +  
Sbjct: 698 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 757

Query: 376 HAKELFVSMESMGCKHTV 393
            A +LF  M   G   TV
Sbjct: 758 KALDLFQEMLEKGFASTV 775



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 137/257 (53%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+   +++L++ + KMG +     V        F P  ++  SL+  L   +++     +
Sbjct: 143 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 202

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F  + A    P+V TY+ +I+  C+ G+   A  +  EM    G+ G  C PN VTY  I
Sbjct: 203 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEM----GEKG--CSPNLVTYNVI 256

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I GLC+   +D+A EL   M DK + PD+ TY+ LI+GFC      EA  +L+EM+D G+
Sbjct: 257 IGGLCRARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGL 316

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P+ +T+N ++D   + G +++A R+ + M+  G+  N   ++TL++G C  G++  A E
Sbjct: 317 KPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALE 376

Query: 380 LFVSMESMGCKHTVFSY 396
           +   M   G +    +Y
Sbjct: 377 IMQEMMEKGVEPDSQTY 393



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 135/257 (52%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P L + N L+    K  +V   + V   +      PD   +T++I   C    + +A  +
Sbjct: 178 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 237

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   GC PN++TY+ +I GLCR      A+ L   M +     G+V  P+  TY  +
Sbjct: 238 LLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDK----GLV--PDLYTYDIL 291

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+G C E    +AK + L+M D  + P+ +TYN+LI GF    D  +A  +  EM+  G+
Sbjct: 292 INGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIKDEMVACGI 351

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + +++ +N +++ +CK GKM++A  +++ M+ +GV P++ T+S L++G C    +  A E
Sbjct: 352 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 411

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M+      TV +Y
Sbjct: 412 LLDEMKKRKLAPTVLTY 428



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/282 (29%), Positives = 140/282 (49%), Gaps = 10/282 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P  AF + + ML +R  PP    +N++     K + ++  L LF+ +   G F    ++N
Sbjct: 721 PTAAFQLLEEML-LRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKG-FASTVSFN 778

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI  +CK G++     +L  ++   F P+ V +TSLI   C    + EA  L+ +++  
Sbjct: 779 TLIEGYCKSGKLQEANHLLEEMIEKQFIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQER 838

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCK 265
              P   TY++L++G    G+      LFEEM A G        +P+ +TY  +ID  C+
Sbjct: 839 NVMPTAKTYTSLLHGYHNIGNMSEVSALFEEMVAKG-------IEPDKMTYYVMIDAYCR 891

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG V +A +L  ++  K +   V  Y++LI   C   ++ E   LL E+ + G +  + T
Sbjct: 892 EGNVMEACKLKDEILVKGMPMSVAAYDALIQALCKKEEFFEVLKLLNEIGESGFRLGLPT 951

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
            +VI       G MDEA+ +L  M+  G   NT++   L+DG
Sbjct: 952 CSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNTTSLGDLVDG 993


>gi|255660844|gb|ACU25591.1| pentatricopeptide repeat-containing protein [Rhaphithamnus
           venustus]
          Length = 418

 Score =  167 bits (424), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 95/274 (34%), Positives = 146/274 (53%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF 
Sbjct: 171 VVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ Q+  +  +PD++TYN+LI 
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIF 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  + ++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQARDLIDEMSMKELKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLK 378



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/252 (35%), Positives = 138/252 (54%), Gaps = 6/252 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     +    D    L   ++++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 169 PSVVSFNTLMSGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMDEANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   R+  A  ++ +L + G  P++ITY+TLI GLC+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIDGHCKNGRVDLAMEIYKQLLSQGFSPDLITYNTLIFGLCK 288

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+ +TYTT+IDG CKEG ++ A E   +M  +NI
Sbjct: 289 KGDLKQARDLIDEMSMKE------LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENI 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L  M+  G++PD  T+ +I++E CK G +   S+
Sbjct: 343 RLDDVAYTALISGLCQEGRSVDAEKMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSK 402

Query: 345 LLELMILRGVNP 356
           LL+ M   G  P
Sbjct: 403 LLKEMXRDGHVP 414



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L++ + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++++ +          P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNGRVDLAMEIYKQLLSQG------FSPDLITYNTLIFGLCKKGDLKQARDLIDEMSMKE 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M   G
Sbjct: 367 KMLRGMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMXRDG 411



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/141 (36%), Positives = 82/141 (58%)

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           +  ++   CKEG +  A+ +F  +    + P VV++N+L+ G+    D +E   L   M 
Sbjct: 139 FNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLKSAMH 198

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             GVQPDV T++V+++ LCK  KMDEA+ L   M+  G+ PN  TF+TL+DG C  GRV+
Sbjct: 199 ASGVQPDVYTYSVLINGLCKESKMDEANELFNEMLDNGLVPNGVTFTTLIDGHCKNGRVD 258

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A E++  + S G    + +Y
Sbjct: 259 LAMEIYKQLLSQGFSPDLITY 279



 Score = 54.7 bits (130), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 40/195 (20%), Positives = 83/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC     + A +L + + +  GK      F  +       + +   ++ +I 
Sbjct: 15  SYCTMIHFLCTHQMLLEAKSLIQIVVSRKGKDSASAVFAAILETKGTQRSDIYVFSGLIT 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E F   ++        T   ++        +        E+++ G   
Sbjct: 75  AYLESGFIRDAIEFFRLTREHKFWVPFDTCRKVLEHLMKLKYFKLVWGFYKEILECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +   G+ P+  +F+TLM G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLMSGYIRLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHASGVQPDVYTY 209


>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
          Length = 649

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 15/292 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F++L   L +    D+ + + +++   G  PD   YNI+IN   + GRV     +
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PDA+ F +++KG C   R  +A+ L  ++    C    +T++ LI+ LC+
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDTLCQ 441

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +FE+M          C P+ VTY+++++G  ++G V+ A +LF  M  K  
Sbjct: 442 NGLVNYATQVFEQMPR------YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK-- 493

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+ +YN+++ G C A  W +A  L+ EM+ +   P+ VTFN++++ LC+ G +D A  
Sbjct: 494 -PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIE 552

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LE M   G  P+  T++ L++GF   GR++ A +L   + +M CK    SY
Sbjct: 553 VLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKL---LSTMSCKPDAISY 601



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 15/278 (5%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L     ++   D  L L   + S  + PD YTYN ++   C   +      ++ 
Sbjct: 158 VVTYTALIDGYCRSGRLDDALRL---IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMA 214

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++R+   P+ V F + I+  C    +  A  L  ++  +GC P+V+ YSTLING    G
Sbjct: 215 EMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQG 274

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           H   AL+L   M         +CKPNTV Y   + GLC     +   EL  +M  K  +P
Sbjct: 275 HVDQALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSP 325

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +  T++ LI   C  N  + A  +L +M   G +PD V +N+I++ L + G++D+A RLL
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLL 385

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             M+ +   P+   F+ ++ GFC   R + A EL   M
Sbjct: 386 NSMVCK---PDALGFNAVLKGFCRAERWHDASELIAQM 420



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 132/283 (46%), Gaps = 28/283 (9%)

Query: 129 LFKRLNSTGLFPD---------------LYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
           L K+L +TG   D                 ++N L+  +C+ GR++    VLG   R+  
Sbjct: 96  LIKKLCATGRLADAERVLDALKAAAAADAVSHNTLVAGYCRDGRLADAERVLG-AARATG 154

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
             + V +T+LI G C   R+ +A  L   +      P+  TY+T++ GLC      +A  
Sbjct: 155 AANVVTYTALIDGYCRSGRLDDALRLIASMPV---APDTYTYNTVLKGLC------IAKK 205

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
             E            C PN VT+ T I   C+ G +D+A +L  QM      PDVV Y++
Sbjct: 206 WEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYST 265

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+GF      ++A  LL  M+    +P+ V +N  +  LC   + ++   L+  M+ +G
Sbjct: 266 LINGFSEQGHVDQALDLLNTML---CKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKG 322

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +PN +TFS L+   C    V+ A E+   ME  GC+    +Y
Sbjct: 323 CSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNY 365



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN+L   L +    +    +F+++      PD+ TY+ L+N F + G V     V  ++
Sbjct: 431 TFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVE----VAIQL 486

Query: 169 LRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
            RS    PD  ++ +++KGLC  +R  +A  L  ++    C PN +T++ LIN LC+ G 
Sbjct: 487 FRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGL 546

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ + E+M N    +G    P+  TY  +I+G  ++G +D A +L   M  K   PD
Sbjct: 547 VDRAIEVLEQMPN----YGST--PDIFTYNALINGFSEQGRLDDALKLLSTMSCK---PD 597

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            ++YNS + G C A  W +A  L+ EM+     P+ VTF
Sbjct: 598 AISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F+ M   R +P  +T  +LL G  ++    +  + LF+   S    PD+++YN 
Sbjct: 446 NYATQVFEQMPRYRCTPDIVTYSSLLNG-FSEQGLVEVAIQLFR---SMPCKPDIFSYNA 501

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C+  R      ++  ++     P+ V F  LI  LC +  +  A  +  ++  +G
Sbjct: 502 VLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYG 561

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TY+ LING    G    AL L   M+         CKP+ ++Y + + GLC+  
Sbjct: 562 STPDIFTYNALINGFSEQGRLDDALKLLSTMS---------CKPDAISYNSTLKGLCRAE 612

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH 296
               A+EL  +M      P+ VT+    H
Sbjct: 613 RWQDAEELVAEMLRNKCTPNEVTFKYANH 641


>gi|414883803|tpg|DAA59817.1| TPA: hypothetical protein ZEAMMB73_625576 [Zea mays]
          Length = 350

 Score =  167 bits (423), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 6/253 (2%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
           +ILI CFC +GR+   F   G  LR+ +    V    LIKGLC   R  +A  + F ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGL 263
             G  P+V +Y+ LI GLC    +  AL L   M ANG    G  C P+ V+Y  +IDGL
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG----GYNCSPDVVSYNIVIDGL 148

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            KEG VDKA  LF +M  +   PD+VTY+S+I G C A   ++A   L +M+ +GV P+ 
Sbjct: 149 FKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNT 208

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +N ++   C  G++ EA RLL+ M   G+  N  T++ L+D +C  GR   A+ +F S
Sbjct: 209 RPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDS 268

Query: 384 MESMGCKHTVFSY 396
           M   G K    +Y
Sbjct: 269 MVRRGQKPNATTY 281



 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/310 (33%), Positives = 155/310 (50%), Gaps = 12/310 (3%)

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           C FD  +    +   L   ++L  C       D   + F     TG        N LI  
Sbjct: 14  CAFDIRIRCFCNVGRLDLADILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKG 73

Query: 152 FCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--- 207
            C   R      +V  R+    +TPD  ++ +LIKGLCAE +  EA  L   + A G   
Sbjct: 74  LCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYN 133

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V++Y+ +I+GL + G    A  LF EM  G G       P+ VTY+++IDGLCK  
Sbjct: 134 CSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMP-GQG-----FPPDLVTYSSVIDGLCKAQ 187

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA+    QM  K + P+   YNSLIHG+C      EA  LL +M   G+Q +VVT+N
Sbjct: 188 AMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYN 247

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM--E 385
           +++D  CK G+  EA  + + M+ RG  PN +T+ +L+ G+   G +    +L   M  +
Sbjct: 248 MLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLLDLMIRD 307

Query: 386 SMGCKHTVFS 395
            +  +H VF+
Sbjct: 308 GIPIEHRVFN 317


>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 576

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 157/305 (51%), Gaps = 14/305 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLL--FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
            +YM N   SP  +    L+  F  + +TK+   ++ +   L  +G   D+ +YN+LI+ 
Sbjct: 102 LEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGI---LEESGAVIDVTSYNVLISG 158

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +CK G +     VL R+     +P+A  + +++  LC   ++ +A  +  +     C P+
Sbjct: 159 YCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPD 215

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+T + LI+  C+      A+ LF EM N        CKP+ VTY  +I G CK G +D+
Sbjct: 216 VVTCTVLIDATCKESGVGQAMKLFNEMRNKG------CKPDVVTYNVLIKGFCKGGRLDE 269

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A     ++      PDV+++N ++   C    W +A  LL  M+ +G  P VVTFN++++
Sbjct: 270 AIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILIN 329

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G + +A  +LE+M   G  PN+ +F+ L+ GFC    ++ A E    M S GC  
Sbjct: 330 FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYP 389

Query: 392 TVFSY 396
            + +Y
Sbjct: 390 DIVTY 394



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/313 (29%), Positives = 156/313 (49%), Gaps = 32/313 (10%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +TS+N+L     K+   +  L +  R+   G+ P+  TY+ ++   C  G++     VLG
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVLG 205

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R L+S   PD V  T LI   C ES + +A  LF +++  GCKP+V+TY+ LI G C+ G
Sbjct: 206 RQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGG 265

Query: 227 HTIVALNLFEEMANGNGKFGVV-----------------------------CKPNTVTYT 257
               A+   +++ +   +  V+                             C P+ VT+ 
Sbjct: 266 RLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFN 325

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +I+ LC++G + KA  +   M      P+  ++N LI GFC     + A   L  M+ +
Sbjct: 326 ILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSR 385

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  PD+VT+N+++  LCK+GK+D+A  +L  +  +G +P+  +++T++DG    G+   A
Sbjct: 386 GCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELA 445

Query: 378 KELFVSMESMGCK 390
            EL   M   G K
Sbjct: 446 VELLEEMCYKGLK 458



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 151/321 (47%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +  +L     K       + LF  + + G  PD+ TYN+LI  FCK GR+      
Sbjct: 214 PDVVTCTVLIDATCKESGVGQAMKLFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRF 273

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++      PD ++   +++ LC+  R M+A  L   +   GC P+V+T++ LIN LC+
Sbjct: 274 LKKLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQ 333

Query: 225 TGHTIVALNLFEEMA-------------------NGNGKFGVV----------CKPNTVT 255
            G    ALN+ E M                    NG G    +          C P+ VT
Sbjct: 334 KGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVT 393

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  ++  LCK+G VD A  +  Q+  K  +P +++YN++I G         A  LL EM 
Sbjct: 394 YNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMC 453

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G++PD++T   ++  L + GK+ EA +    +    + PN   +++++ G C + + +
Sbjct: 454 YKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTS 513

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A +    M + GCK T  +Y
Sbjct: 514 LAIDFLADMVAKGCKPTEATY 534



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S N++   L     +   + L   +   G  P + T+NILIN  C+ G +     V
Sbjct: 284 PDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNV 343

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +   TP++ +F  LI+G C    I  A      + + GC P+++TY+ L+  LC+
Sbjct: 344 LEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCK 403

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ +  ++++        C P+ ++Y T+IDGL K G  + A EL  +M  K +
Sbjct: 404 DGKVDDAVVILSQLSSKG------CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGL 457

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++T  S++ G        EA      +    ++P+   +N I+  LCK+ +   A  
Sbjct: 458 KPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAID 517

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L  M+ +G  P  +T++TL+ G    G    A +L   + S G
Sbjct: 518 FLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNELYSRG 561



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 131/251 (52%), Gaps = 8/251 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       L++ + +   G  P+  ++N LI  FC    +      
Sbjct: 319 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEY 378

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V +  L+  LC + ++ +A  + ++L + GC P++I+Y+T+I+GL 
Sbjct: 379 LEIMVSRGCY-PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 437

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ L EEM           KP+ +T T+++ GL +EG V +A + F  +K   
Sbjct: 438 KVGKAELAVELLEEMCYKG------LKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFA 491

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+   YNS+I G C +   + A   L +M+ +G +P   T+  ++  +   G  ++AS
Sbjct: 492 IRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDAS 551

Query: 344 RLLELMILRGV 354
           +L   +  RG+
Sbjct: 552 KLSNELYSRGL 562



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 65/119 (54%), Gaps = 3/119 (2%)

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L + G +++       M +K  +PDV+   +LI  FC       A+ ++  + + G   D
Sbjct: 89  LIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGAVID 148

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           V ++NV++   CK+G+++EA R+L+ M   GV+PN +T+  ++   C  G++  A ++ 
Sbjct: 149 VTSYNVLISGYCKSGEIEEALRVLDRM---GVSPNAATYDAVLCSLCDRGKLKQAMQVL 204



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 68/173 (39%), Gaps = 35/173 (20%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P + ++N+L   L K    D  + +  +L+S G  P L +YN +I+   K+G+   
Sbjct: 385 RGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAEL 444

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-------------- 206
              +L  +      PD +  TS++ GL  E ++ EA   F  LK F              
Sbjct: 445 AVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIRPNAFIYNSIIT 504

Query: 207 ---------------------GCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
                                GCKP   TY+TLI G+   G    A  L  E+
Sbjct: 505 GLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGITYEGLAEDASKLSNEL 557



 Score = 45.1 bits (105), Expect = 0.069,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 36/67 (53%)

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +  L +NG+++E SR LE M  +G +P+    + L+  FC  GR  +A ++   +E  G 
Sbjct: 86  LRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALIREFCKIGRTKNASQIMGILEESGA 145

Query: 390 KHTVFSY 396
              V SY
Sbjct: 146 VIDVTSY 152


>gi|242065566|ref|XP_002454072.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
 gi|241933903|gb|EES07048.1| hypothetical protein SORBIDRAFT_04g024190 [Sorghum bicolor]
          Length = 820

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 141/289 (48%), Gaps = 10/289 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+  L     +T   D  L LF+ L      PD+YT+  L+   C   R   G  +L +
Sbjct: 200 VSYAALIEGFCETGRVDEALELFRELEQ----PDMYTHAALVKGLCDARRGEEGLYMLQK 255

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +    + P   A+ +L+   C E +  EA  +  ++   G  P  +T + ++N  CR G 
Sbjct: 256 MKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGR 315

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ +FE M          C+PN  TY  ++ G C  G V KA  L  QM++  + PD
Sbjct: 316 MSGAVRVFESMKLKG------CEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPD 369

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTYN LI G C       A  LL  M   G+  D  T+NV++D LCK GK+DEA  L +
Sbjct: 370 VVTYNLLIRGQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFD 429

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  RG+ PN+ TF+T+++G C  G+ + A      M S GC    ++Y
Sbjct: 430 GLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTY 478



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 139/300 (46%), Gaps = 16/300 (5%)

Query: 103 SPPPLT-----SFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMG 156
           SPPPL      +F  L    ++      +L LF  +   G   P   TYN LI   C+  
Sbjct: 84  SPPPLRPLFDRTFRSLLTHFSRYALTPLMLRLFAHMYHHGPPAPTGATYNALIRALCRRA 143

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            + H    L  ++RS + PDA  F SLI G C   ++  A  LF K+   G   + ++Y+
Sbjct: 144 DLRHAQRYLSLMVRSGWRPDAFTFNSLILGYCRTQQLDVAQDLFDKMPLRGFSQDAVSYA 203

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI G C TG    AL LF E+           +P+  T+  ++ GLC     ++   + 
Sbjct: 204 ALIEGFCETGRVDEALELFRELE----------QPDMYTHAALVKGLCDARRGEEGLYML 253

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +MK+    P    Y +L+  +C      EA  +L EM D G+ P  VT   +++  C+ 
Sbjct: 254 QKMKELGWRPATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCRE 313

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+M  A R+ E M L+G  PN  T++ ++ GFC  G+V  A  L   M   G +  V +Y
Sbjct: 314 GRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTY 373



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 6/267 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +   L   L   +  +  L + +++   G  P    Y  L++ +C+  +      +
Sbjct: 228 PDMYTHAALVKGLCDARRGEEGLYMLQKMKELGWRPATRAYAALVDLWCREQKAEEAEKM 287

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   P AV  T+++   C E R+  A  +F  +K  GC+PNV TY+ ++ G C 
Sbjct: 288 LNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRVFESMKLKGCEPNVWTYNAMVQGFCN 347

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ L ++M     + GV  +P+ VTY  +I G C +G ++ A  L   M+   +
Sbjct: 348 VGKVYKAMALLDQMR----ECGV--EPDVVTYNLLIRGQCIDGHIESAFRLLRLMEGNGL 401

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D  TYN LI   C     +EA  L   +  +G++P+ VTFN +++ LCK GK D A  
Sbjct: 402 AADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTVINGLCKGGKFDVACT 461

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLT 371
            LE M+  G  P+T T+S  ++  C T
Sbjct: 462 FLEKMVSAGCAPDTYTYSPFIENLCKT 488



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 78/271 (28%), Positives = 135/271 (49%), Gaps = 6/271 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            + +F+ +   G  P+++TYN ++  FC +G+V     +L ++      PD V +  LI+
Sbjct: 319 AVRVFESMKLKGCEPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIR 378

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C +  I  A  L   ++  G   +  TY+ LI+ LC+TG    A +LF    +G    
Sbjct: 379 GQCIDGHIESAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLF----DGLEYR 434

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G+  +PN+VT+ T+I+GLCK G  D A     +M      PD  TY+  I   C      
Sbjct: 435 GI--RPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSR 492

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           E    + EM+ + V+P  V + +++D L K      A+R+   M+  G +P+  T++T +
Sbjct: 493 EGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTYTTSV 552

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +C  GR++ A+ + + M+  G      +Y
Sbjct: 553 RAYCNEGRLHEAENVVMEMKKGGIIVDAMAY 583



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/293 (27%), Positives = 143/293 (48%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L     + +  +    +   +   GL P   T   ++N +C+ GR+S    V
Sbjct: 263 PATRAYAALVDLWCREQKAEEAEKMLNEMFDNGLVPCAVTCTAVVNAYCREGRMSGAVRV 322

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              + L+ C  P+   + ++++G C   ++ +A AL  +++  G +P+V+TY+ LI G C
Sbjct: 323 FESMKLKGC-EPNVWTYNAMVQGFCNVGKVYKAMALLDQMRECGVEPDVVTYNLLIRGQC 381

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             GH   A  L   M  GNG        +  TY  +ID LCK G VD+A  LF  ++ + 
Sbjct: 382 IDGHIESAFRLLRLM-EGNG-----LAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRG 435

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ VT+N++I+G C    ++ A   L +M+  G  PD  T++  ++ LCK     E  
Sbjct: 436 IRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSPFIENLCKTKGSREGL 495

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             ++ M+ + V P+T  ++ ++D          A  ++  M S+GC   V +Y
Sbjct: 496 SFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLGCSPDVVTY 548



 Score = 94.4 bits (233), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 82/396 (20%), Positives = 147/396 (37%), Gaps = 95/396 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD  L  R   P   +FN +   L K   +D   +  +++ S G  PD YTY+ 
Sbjct: 422 DEACSLFD-GLEYRGIRPNSVTFNTVINGLCKGGKFDVACTFLEKMVSAGCAPDTYTYSP 480

Query: 148 LINCFCKMGRVSHGF-------------------VVLGRILRS----------------- 171
            I   CK      G                    +V+ R+ +                  
Sbjct: 481 FIENLCKTKGSREGLSFIDEMLQKDVKPSTVNYTIVIDRLFKERNYGLATRIWGQMVSLG 540

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           C +PD V +T+ ++  C E R+ EA  +  ++K  G   + + Y+TLI+G    G T  A
Sbjct: 541 C-SPDVVTYTTSVRAYCNEGRLHEAENVVMEMKKGGIIVDAMAYNTLIDGHTSIGKTDHA 599

Query: 232 LNLFEEMANGNGKFGVVCKPNTVT------------------------------------ 255
           + + + M       GV   PN  T                                    
Sbjct: 600 VTILKHMT------GVASMPNHFTFFILLRHLLQRRLAEDVPLKTTSVWKTIELADVFEL 653

Query: 256 ---------------YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                          Y  I++G  +E  +D+   L   MK+ ++  +   Y SL++ FC 
Sbjct: 654 FELMKKNSVPSSARAYLAILEGFSEERRLDEVTSLVSHMKEDDLPLNEDIYTSLVNCFCK 713

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
              + +A  LL  M+  G  P+++++  ++      G+ D A  +   +  +  N +   
Sbjct: 714 LRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIV 773

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  ++DG    G  +   ++   +E M CK +  +Y
Sbjct: 774 WKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETY 809



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 44/254 (17%), Positives = 88/254 (34%), Gaps = 30/254 (11%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF------------ 180
           +   G+  D   YN LI+    +G+  H   +L  +      P+   F            
Sbjct: 571 MKKGGIIVDAMAYNTLIDGHTSIGKTDHAVTILKHMTGVASMPNHFTFFILLRHLLQRRL 630

Query: 181 --------TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                   TS+ K +     + +   LF  +K      +   Y  ++ G           
Sbjct: 631 AEDVPLKTTSVWKTI----ELADVFELFELMKKNSVPSSARAYLAILEGFSEERRLDEVT 686

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L   M   +         N   YT++++  CK      A  L   M      P++++Y 
Sbjct: 687 SLVSHMKEDDLPL------NEDIYTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQ 740

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            L+ GF      + A  +   +  +    D + + +I+D L + G  D    ++ ++   
Sbjct: 741 YLLSGFTAEGQADRAKEIFRGLRWKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQM 800

Query: 353 GVNPNTSTFSTLMD 366
              P+  T++ L +
Sbjct: 801 KCKPSDETYAMLTE 814



 Score = 40.8 bits (94), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 24/113 (21%), Positives = 45/113 (39%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +  L  C  K + Y    +L   +   G  P+L +Y  L++ F   G+      +   + 
Sbjct: 704 YTSLVNCFCKLRMYPDAWALLCSMIGHGFLPNLISYQYLLSGFTAEGQADRAKEIFRGLR 763

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
              +  D + +  +I GL  +        + + L+   CKP+  TY+ L   L
Sbjct: 764 WKEYNTDEIVWKIIIDGLIRQGHPDMCHDMISILEQMKCKPSDETYAMLTEEL 816


>gi|41152692|dbj|BAD08216.1| hypothetical protein [Oryza sativa Japonica Group]
          Length = 401

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 144/299 (48%), Gaps = 32/299 (10%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
            D ML+ R SP  +T +N +   L K +  D  + +   +  +G+ PD  TYN +++ FC
Sbjct: 104 LDKMLDQRISPNVVT-YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+     V L ++      PD V + SL+  LC   R  EA  +F  +   G KP++ 
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGV-VC----------------- 249
           TY TL+ G    G  +    L + M   NG       F + VC                 
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVR-NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 250 ------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                  PN VTY T+ID LCK G V+ A   F QM D+ + PD + YNSLIH  C  + 
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           W +A  L +EM+D+G+    + FN I+D  CK G++ E+ +L +LM+  GV P+  T  
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLG 400



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLING 221
           V   +LR    PD  ++  L+ GLC E+R  EA  L   +   G  C P+V++YST+ING
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             + G         ++M +          PN VTY +II  LCK   VDKA E+   M  
Sbjct: 98  FFKEGD-------LDKMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD +TYNS++HGFC +    EA   L +M   GV+PDVVT+N +MD LCKNG+  E
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE 204

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           A ++ + M  RG+ P+ +T+ TL+ G+   G +     L   M   G    H VFS
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 260



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 152/311 (48%), Gaps = 17/311 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTY 145
            +A  +FD +L  R   P + S+N+L   L         L L   +   G    PD+ +Y
Sbjct: 34  EDARHVFDELL--RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSY 91

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           + +IN F K G        L ++L    +P+ V + S+I  LC    + +A  + T +  
Sbjct: 92  STVINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+ +TY+++++G C +G    A+   ++M +         +P+ VTY +++D LCK
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG------VEPDVVTYNSLMDYLCK 198

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G   +A+++F  M  + + PD+ TY +L+ G+       E + LL  M+  G+ P+   
Sbjct: 199 NGRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYV 258

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F++++    K  K++EA  +   M  +G+NPN  T+ T++D  C +GRV  A   F  M 
Sbjct: 259 FSILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMI 318

Query: 386 SMGCKHTVFSY 396
             G +     Y
Sbjct: 319 DEGLRPDSIVY 329


>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
 gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
 gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
          Length = 649

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 15/292 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F++L   L +    D+ + + +++   G  PD   YNI+IN   + GRV     +
Sbjct: 325 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 384

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PDA+ F +++KG C   R  +A+ L  ++    C    +T++ LI+ LC+
Sbjct: 385 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQ 441

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +FE+M          C P+ VTY+++++G  ++G V+ A +LF  M  K  
Sbjct: 442 NGLVNYATQVFEQMPR------YRCTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK-- 493

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+ +YN+++ G C A  W +A  L+ EM+ +   P+ VTFN++++ LC+ G +D A  
Sbjct: 494 -PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIE 552

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LE M   G  P+  T++ L++GF   GR++ A +L   + +M CK    SY
Sbjct: 553 VLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKL---LSTMSCKPDAISY 601



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 136/278 (48%), Gaps = 15/278 (5%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L     ++   D  L L   + S  + PD YTYN ++   C   +      ++ 
Sbjct: 158 VVTYTALIDGYCRSGRLDDALRL---IASMPVAPDTYTYNTVLKGLCIAKKWEEAEELMA 214

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++R+   P+ V F + I+  C    +  A  L  ++  +GC P+V+ YSTLING    G
Sbjct: 215 EMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQG 274

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           H   AL+L   M         +CKPNTV Y   + GLC     +   EL  +M  K  +P
Sbjct: 275 HVDQALDLLNTM---------LCKPNTVCYNAALKGLCIAERWEDIGELMAEMVRKGCSP 325

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +  T++ LI   C  N  + A  +L +M   G +PD V +N+I++ L + G++D+A RLL
Sbjct: 326 NEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRLL 385

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             M+ +   P+   F+ ++ GFC   R + A EL   M
Sbjct: 386 NSMVCK---PDALGFNAVLKGFCRAERWHDASELIAQM 420



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/253 (30%), Positives = 124/253 (49%), Gaps = 13/253 (5%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           ++N L+  +C+ GR++    VLG   R+    + V +T+LI G C   R+ +A  L   +
Sbjct: 126 SHNTLVAGYCRDGRLADAERVLG-AARATGAANVVTYTALIDGYCRSGRLDDALRLIASM 184

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
                 P+  TY+T++ GLC      +A    E            C PN VT+ T I   
Sbjct: 185 PV---APDTYTYNTVLKGLC------IAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSF 235

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C+ G +D+A +L  QM      PDVV Y++LI+GF      ++A  LL  M+    +P+ 
Sbjct: 236 CQNGLLDRAVQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTML---CKPNT 292

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
           V +N  +  LC   + ++   L+  M+ +G +PN +TFS L+   C    V+ A E+   
Sbjct: 293 VCYNAALKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQ 352

Query: 384 MESMGCKHTVFSY 396
           ME  GC+    +Y
Sbjct: 353 MEKYGCEPDTVNY 365



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN+L   L +    +    +F+++      PD+ TY+ L+N F + G V     V  ++
Sbjct: 431 TFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVE----VAIQL 486

Query: 169 LRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
            RS    PD  ++ +++KGLC  +R  +A  L  ++    C PN +T++ LIN LC+ G 
Sbjct: 487 FRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGL 546

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ + E+M N    +G    P+  TY  +I+G  ++G +D A +L   M  K   PD
Sbjct: 547 VDRAIEVLEQMPN----YGST--PDIFTYNALINGFSEQGRLDDALKLLSTMSCK---PD 597

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            ++YNS + G C A  W +A  L+ EM+     P+ VTF
Sbjct: 598 AISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 636



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 107/214 (50%), Gaps = 14/214 (6%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LIK LCA  R+ +A  +   LKA     + ++++TL+ G CR G    A  +        
Sbjct: 96  LIKKLCATRRLADAERVLDALKAAA-AADAVSHNTLVAGYCRDGRLADAERVL------- 147

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G        N VTYT +IDG C+ G +D A  L   M    + PD  TYN+++ G C A 
Sbjct: 148 GAARATGAANVVTYTALIDGYCRSGRLDDALRLIASMP---VAPDTYTYNTVLKGLCIAK 204

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
            W EA  L+ EM+     P+ VTF   +   C+NG +D A +LL+ M   G  P+   +S
Sbjct: 205 KWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQLLDQMPRYGCTPDVVIYS 264

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           TL++GF   G V+ A +L   + +M CK     Y
Sbjct: 265 TLINGFSEQGHVDQALDL---LNTMLCKPNTVCY 295



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F+ M   R +P  +T  +LL G  ++    +  + LF+   S    PD+++YN 
Sbjct: 446 NYATQVFEQMPRYRCTPDIVTYSSLLNG-FSEQGLVEVAIQLFR---SMPCKPDIFSYNA 501

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C+  R      ++  ++     P+ V F  LI  LC +  +  A  +  ++  +G
Sbjct: 502 VLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYG 561

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TY+ LING    G    AL L   M+         CKP+ ++Y + + GLC+  
Sbjct: 562 STPDIFTYNALINGFSEQGRLDDALKLLSTMS---------CKPDAISYNSTLKGLCRAE 612

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH 296
               A+EL  +M      P+ VT+    H
Sbjct: 613 RWQDAEELVAEMLRNKCTPNEVTFKYANH 641


>gi|357135887|ref|XP_003569539.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Brachypodium distachyon]
          Length = 476

 Score =  167 bits (423), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 152/309 (49%), Gaps = 15/309 (4%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P  A  +F    +    P    S+  +   L    H     SL   + + G  P   TYN
Sbjct: 106 PLAALQLFRSAPSALALPHSARSYTAVLATLVSHSHLPLAHSLLADMRAGGFAPTTATYN 165

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +L+   C          V  R+ R+   PDA ++ ++I GLC  SR  +A  +F+++ A 
Sbjct: 166 VLLKAHCSDASAPIEDAV--RLFRNIPKPDACSYNTVIDGLCRRSRRADAQEIFSEMVAN 223

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P V+TY+T+IN L R G    AL +F+EM    G+ G+   PN VTY+++IDGLCK 
Sbjct: 224 GVAPTVVTYTTVINWLARDGCLDDALKMFDEM----GRIGIA--PNVVTYSSLIDGLCKG 277

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A EL  +M  +   P+ +TY+S+I+G C  +  NEA  +L  M  QG +PD   F
Sbjct: 278 GRAASALELLDRMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLF 337

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNHAKE 379
             ++  LC  G+  EA+  L+ M+L GV PN  T+S        ++   C  G       
Sbjct: 338 GKLIVGLCGAGRAVEAANYLDEMVLSGVEPNRVTWSLHVRINDAVVTALCAKGEAGRTFR 397

Query: 380 LFVSMESMG 388
           ++ SM + G
Sbjct: 398 VYQSMRTRG 406



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/297 (29%), Positives = 137/297 (46%), Gaps = 19/297 (6%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGF 162
           PP LT    L    ++T      L LF+   S    P    +Y  ++        +    
Sbjct: 91  PPFLT----LLRAFSRTHRPLAALQLFRSAPSALALPHSARSYTAVLATLVSHSHLPLAH 146

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLC--AESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            +L  +    F P    +  L+K  C  A + I +A  LF  +     KP+  +Y+T+I+
Sbjct: 147 SLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRLFRNIP----KPDACSYNTVID 202

Query: 221 GLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           GLCR      A  +F EM ANG         P  VTYTT+I+ L ++G +D A ++F +M
Sbjct: 203 GLCRRSRRADAQEIFSEMVANG-------VAPTVVTYTTVINWLARDGCLDDALKMFDEM 255

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
               I P+VVTY+SLI G C       A  LL  M  +   P+ +T++ +++ LCK  ++
Sbjct: 256 GRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCKEDRL 315

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +EA  +L+ M L+G  P+   F  L+ G C  GR   A      M   G +    ++
Sbjct: 316 NEAMEVLDRMRLQGRKPDAGLFGKLIVGLCGAGRAVEAANYLDEMVLSGVEPNRVTW 372



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 94/320 (29%), Positives = 147/320 (45%), Gaps = 34/320 (10%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTS---FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP--- 140
           P  A  +FD       S P L S    +LL   LA         SL  R  S  LFP   
Sbjct: 30  PRRALALFDAATAASVSAPILPSPDTVSLLTSRLASAGLLPLATSLLSR--SRALFPSAA 87

Query: 141 DLYT-YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA-------FTSLIKGLCAESR 192
           DL   +  L+  F +    +H  +   ++ RS   P A+A       +T+++  L + S 
Sbjct: 88  DLEPPFLTLLRAFSR----THRPLAALQLFRSA--PSALALPHSARSYTAVLATLVSHSH 141

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV--ALNLFEEMANGNGKFGVVCK 250
           +  A +L   ++A G  P   TY+ L+   C      +  A+ LF            + K
Sbjct: 142 LPLAHSLLADMRAGGFAPTTATYNVLLKAHCSDASAPIEDAVRLFRN----------IPK 191

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+  +Y T+IDGLC+      A+E+F +M    + P VVTY ++I+        ++A  +
Sbjct: 192 PDACSYNTVIDGLCRRSRRADAQEIFSEMVANGVAPTVVTYTTVINWLARDGCLDDALKM 251

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             EM   G+ P+VVT++ ++D LCK G+   A  LL+ M      PNT T+S++++G C 
Sbjct: 252 FDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALELLDRMAKEAKLPNTITYSSVINGLCK 311

Query: 371 TGRVNHAKELFVSMESMGCK 390
             R+N A E+   M   G K
Sbjct: 312 EDRLNEAMEVLDRMRLQGRK 331



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/244 (25%), Positives = 121/244 (49%), Gaps = 13/244 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  +   LA+    D  L +F  +   G+ P++ TY+ LI+  CK GR +    +
Sbjct: 227 PTVVTYTTVINWLARDGCLDDALKMFDEMGRIGIAPNVVTYSSLIDGLCKGGRAASALEL 286

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+ +    P+ + ++S+I GLC E R+ EA  +  +++  G KP+   +  LI GLC 
Sbjct: 287 LDRMAKEAKLPNTITYSSVINGLCKEDRLNEAMEVLDRMRLQGRKPDAGLFGKLIVGLCG 346

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT-------TIIDGLCKEGFVDKAKELFL 277
            G  + A N  +EM           +PN VT++        ++  LC +G   +   ++ 
Sbjct: 347 AGRAVEAANYLDEMVLSG------VEPNRVTWSLHVRINDAVVTALCAKGEAGRTFRVYQ 400

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M+ + I+ +  T++ L+  F   ND  +A  ++++M+ +   P+  T+++I+       
Sbjct: 401 SMRTRGISTEPGTFHLLVEFFSKKNDLEKAAHVVLDMLSEKCIPERETWDIILTRYWSKK 460

Query: 338 KMDE 341
           K+ +
Sbjct: 461 KVRQ 464


>gi|255574927|ref|XP_002528370.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532238|gb|EEF34042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 712

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 98/310 (31%), Positives = 156/310 (50%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N AF  F   + M  +P  L +F+ L   L K         + + +   G  P++YT+  
Sbjct: 280 NRAFWYFKKWVQMGLNPN-LINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTHTA 338

Query: 148 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK G     F +  +++RS  + P+   +T +I G C E ++  A  L  ++K  
Sbjct: 339 LIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQ 398

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN  TY+ LI+G C+ G+   A  L + M    GK G    PN  TY  IIDGLCK+
Sbjct: 399 GLVPNTNTYTCLIDGHCKAGNFGRAYELMDLM----GKEGFT--PNIFTYNAIIDGLCKK 452

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A +L  +     ++ D VTY  LI  FC   D  +A  +   M   G+QPD+ T+
Sbjct: 453 GRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTY 512

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           NV++   C+  K++E+ +L E  +  G+ P   T+++++ G+C  G ++ A + F  M  
Sbjct: 513 NVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRD 572

Query: 387 MGCKHTVFSY 396
            GCK    +Y
Sbjct: 573 YGCKPDSITY 582



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 133/259 (51%), Gaps = 7/259 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    +F  +    + PD  +Y +++  +C+MGR+S     L  ++   +  D    T +
Sbjct: 210 DYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLM 269

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I     +  +  A   F K    G  PN+I +S+LINGLC+ G    A  + EEM     
Sbjct: 270 ISTFSEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGW 329

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYAN 302
                 KPN  T+T +IDGLCK+G+ +KA  LFL++ +  N  P+V TY  +I+G+C   
Sbjct: 330 ------KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEE 383

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             N A  LLI M +QG+ P+  T+  ++D  CK G    A  L++LM   G  PN  T++
Sbjct: 384 KLNRAEMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYN 443

Query: 363 TLMDGFCLTGRVNHAKELF 381
            ++DG C  GR   A +L 
Sbjct: 444 AIIDGLCKKGRFPEAYKLL 462



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 95/304 (31%), Positives = 157/304 (51%), Gaps = 6/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML+ R   P  TS+ L+     +      V    K +   G   D  T  ++I+ F
Sbjct: 215 VFDEMLD-RAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTF 273

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            + G V+  F    + ++    P+ + F+SLI GLC    I +A  +  ++   G KPNV
Sbjct: 274 SEKGFVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNV 333

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            T++ LI+GLC+ G T  A  LF ++   +       KPN  TYT +I+G CKE  +++A
Sbjct: 334 YTHTALIDGLCKKGWTEKAFRLFLKLVRSDNY-----KPNVYTYTCMINGYCKEEKLNRA 388

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           + L ++MK++ + P+  TY  LI G C A ++  A  L+  M  +G  P++ T+N I+D 
Sbjct: 389 EMLLIRMKEQGLVPNTNTYTCLIDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDG 448

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK G+  EA +LL   +  G++ +  T++ L+  FC       A  +F  M  +G +  
Sbjct: 449 LCKKGRFPEAYKLLRRGLKSGLHADKVTYTILISEFCRQTDNKQALAIFSRMFKVGLQPD 508

Query: 393 VFSY 396
           + +Y
Sbjct: 509 MHTY 512



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 80/284 (28%), Positives = 135/284 (47%), Gaps = 6/284 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  ++      P + ++  +     K +  +    L  R+   GL P+  TY  L
Sbjct: 351 KAFRLFLKLVRSDNYKPNVYTYTCMINGYCKEEKLNRAEMLLIRMKEQGLVPNTNTYTCL 410

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G     + ++  + +  FTP+   + ++I GLC + R  EA  L  +    G 
Sbjct: 411 IDGHCKAGNFGRAYELMDLMGKEGFTPNIFTYNAIIDGLCKKGRFPEAYKLLRRGLKSGL 470

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + +TY+ LI+  CR      AL +F  M      F V  +P+  TY  +I   C++  
Sbjct: 471 HADKVTYTILISEFCRQTDNKQALAIFSRM------FKVGLQPDMHTYNVLIATFCRQKK 524

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+++++LF +     + P   TY S+I G+C     + A     +M D G +PD +T+  
Sbjct: 525 VEESEKLFEEAVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGA 584

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           ++  LC   K+DEA +L E MI  G++P   T  TL   +C  G
Sbjct: 585 LISGLCNESKLDEACQLYETMIDNGLSPCEVTRVTLAYEYCKQG 628



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 64/220 (29%), Positives = 102/220 (46%), Gaps = 11/220 (5%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++ +L     +       L++F R+   GL PD++TYN+LI  FC+  +V     +   
Sbjct: 475 VTYTILISEFCRQTDNKQALAIFSRMFKVGLQPDMHTYNVLIATFCRQKKVEESEKLFEE 534

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
            +     P    +TS+I G C +  I  A   F K++ +GCKP+ ITY  LI+GLC    
Sbjct: 535 AVGLGLLPTKETYTSMICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESK 594

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL-FLQMKDKNINP 286
              A  L+E M + NG       P  VT  T+    CK+G  D A  +  L+  +K +  
Sbjct: 595 LDEACQLYETMID-NG-----LSPCEVTRVTLAYEYCKQG--DSATAMIILERLEKKLW- 645

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            + T N+LI   C       A     +++D+ +  D +T 
Sbjct: 646 -IRTVNTLIRKLCSEKKVGVAALFFHKLLDKDLNVDRITL 684



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 89/179 (49%), Gaps = 6/179 (3%)

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++      G    A+N+  EM N     G+V K   + +  +ID     GFVD A+++F 
Sbjct: 164 MVRSFSEIGKLKEAVNMVIEMQN----HGLVLKARILNF--VIDVALALGFVDYAEKVFD 217

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M D+ + PD  +Y  ++ G+C     ++ +  L +M+++G   D  T  +++    + G
Sbjct: 218 EMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIERGYAVDNATCTLMISTFSEKG 277

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++ A    +  +  G+NPN   FS+L++G C  G +  A E+   M   G K  V+++
Sbjct: 278 FVNRAFWYFKKWVQMGLNPNLINFSSLINGLCKIGSIKQAFEMLEEMVRKGWKPNVYTH 336



 Score = 81.6 bits (200), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 11/215 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  IF  M  +   P  + ++N+L     + K  +    LF+     GL P   TY  +
Sbjct: 492 QALAIFSRMFKVGLQPD-MHTYNVLIATFCRQKKVEESEKLFEEAVGLGLLPTKETYTSM 550

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +C+ G +S       ++      PD++ + +LI GLC ES++ EA  L+  +   G 
Sbjct: 551 ICGYCRDGHISSAIKFFHKMRDYGCKPDSITYGALISGLCNESKLDEACQLYETMIDNGL 610

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  +T  TL    C+ G +  A+ + E +           K    T  T+I  LC E  
Sbjct: 611 SPCEVTRVTLAYEYCKQGDSATAMIILERLEK---------KLWIRTVNTLIRKLCSEKK 661

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           V  A   F ++ DK++N D +T  +     CY ++
Sbjct: 662 VGVAALFFHKLLDKDLNVDRITLAAFTTA-CYESN 695



 Score = 48.1 bits (113), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 39/182 (21%), Positives = 78/182 (42%), Gaps = 23/182 (12%)

Query: 210 PNVITYS---TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           PN +T+    T++  L +   ++V+L+ F  +  G  KF    +   V  TT ++     
Sbjct: 97  PNSLTHEQVITVVASLAQEAGSVVSLSFFNWVI-GFSKFRHFMRLYIVCATTFLNN---- 151

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             +D+A E+                  ++  F       EA  ++IEM + G+       
Sbjct: 152 DNLDRATEVM---------------QCMVRSFSEIGKLKEAVNMVIEMQNHGLVLKARIL 196

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D     G +D A ++ + M+ R V P+++++  ++ G+C  GR++        M  
Sbjct: 197 NFVIDVALALGFVDYAEKVFDEMLDRAVVPDSTSYKLMVVGYCRMGRISDVDRWLKDMIE 256

Query: 387 MG 388
            G
Sbjct: 257 RG 258


>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
          Length = 592

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 88/258 (34%), Positives = 139/258 (53%), Gaps = 8/258 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN +I+ FCK+ ++     VL R+    F PD V +  +I  LC   ++  A  +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTT 258
             +L    C P VITY+ LI      G    A+ L EEM A G         P+  TY  
Sbjct: 205 LDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARG-------LLPDMYTYNA 257

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           II G+CKEG V++A EL   +  K   PDV++YN L+  F     W+E   L+ EM  +G
Sbjct: 258 IIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRG 317

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P+ VT+++++  LC+ G++DEA  +L++MI + + P+T ++  L+   C  GR++ A 
Sbjct: 318 CEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLAI 377

Query: 379 ELFVSMESMGCKHTVFSY 396
            +   M S GC   + +Y
Sbjct: 378 GIMDYMISNGCLPDIVNY 395



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/280 (31%), Positives = 143/280 (51%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N+L         +D    L   + S G  P+  TY+ILI+  C+ GR+     V
Sbjct: 285 PDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISV 344

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++    TPD  ++  LI  LC E R+  A  +   + + GC P+++ Y+T++  LC+
Sbjct: 345 LKVMIEKELTPDTYSYDPLISALCKEGRLDLAIGIMDYMISNGCLPDIVNYNTILAALCK 404

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL +F ++       G+ C PN  +Y T+I  L   G   +A  +   M  K I
Sbjct: 405 NGNANQALEIFNKLR------GMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGI 458

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD +TYNSLI   C      EA  LL +M   G +P V+++N+++  LCK  ++D+A  
Sbjct: 459 DPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIG 518

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +   MI +G  PN +T+  L++G    G    A EL  S+
Sbjct: 519 MFAEMIEKGCRPNETTYILLIEGIGFAGWRTEAMELANSL 558



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 155/309 (50%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + + ML  R   P + ++N +   + K    +    L   L S G  PD+ +YNI
Sbjct: 234 NEAMKLLEEML-ARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNI 292

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+  F   G+   G  ++  +      P+ V ++ LI  LC   RI EA ++   +    
Sbjct: 293 LLRAFLNQGKWDEGEKLVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKE 352

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  LI+ LC+ G   +A+ + + M + NG     C P+ V Y TI+  LCK G
Sbjct: 353 LTPDTYSYDPLISALCKEGRLDLAIGIMDYMIS-NG-----CLPDIVNYNTILAALCKNG 406

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             ++A E+F +++     P+V +YN++I       D + A  ++  M+ +G+ PD +T+N
Sbjct: 407 NANQALEIFNKLRGMGCPPNVSSYNTMISALWSCGDRSRALGMVPAMISKGIDPDEITYN 466

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC++G ++EA  LL+ M   G  P   +++ ++ G C   R++ A  +F  M   
Sbjct: 467 SLISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEK 526

Query: 388 GCKHTVFSY 396
           GC+    +Y
Sbjct: 527 GCRPNETTY 535



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 127/254 (50%), Gaps = 6/254 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   ++++L   L +    D  +S+ K +    L PD Y+Y+ LI+  CK GR+  
Sbjct: 316 RGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDL 375

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              ++  ++ +   PD V + +++  LC      +A  +F KL+  GC PNV +Y+T+I+
Sbjct: 376 AIGIMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMIS 435

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            L   G    AL +   M +          P+ +TY ++I  LC++G V++A  L   M+
Sbjct: 436 ALWSCGDRSRALGMVPAMISKG------IDPDEITYNSLISCLCRDGLVEEAIGLLDDME 489

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P V++YN ++ G C     ++A  +  EM+++G +P+  T+ ++++ +   G   
Sbjct: 490 QSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGIGFAGWRT 549

Query: 341 EASRLLELMILRGV 354
           EA  L   +  R V
Sbjct: 550 EAMELANSLFSRDV 563


>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
          Length = 778

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 177/338 (52%), Gaps = 19/338 (5%)

Query: 56  LRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG 115
           LRLT   +A L+  +    +S GQ       P+ AF IF  M  +R  P  LT   LL  
Sbjct: 128 LRLTSPSKALLDTAIGAYVQS-GQ-------PHHAFQIFKKMKRLRLRPNLLTCNTLLNS 179

Query: 116 CLAKTKHYDTVLS--LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
            +     +    S   F      G+ P++ T+NI+I  +C   +       L  + +   
Sbjct: 180 LVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNC 239

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +PD V + +++  LC + R+ +A  L   +K+ G  PN  TY+ L+ G C+ G    A N
Sbjct: 240 SPDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           + E M   N        P+  TY  +I+GLC EG +++A +L  +M++  + PDVV+YN+
Sbjct: 300 VIELMTQNN------LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNT 353

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G    +  +EA  LL EM ++GV+P+ VT N+++   CK GKMD+AS  +  M   G
Sbjct: 354 LINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG 413

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            +P+  T++TL++G+C  G +  A   F +M+ MG K+
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEA---FRTMDEMGRKN 448



 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +   L K         L   + S GL P+  TYNIL+  +CKMG +     V
Sbjct: 241 PDNVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  + ++   PD   +  LI GLC E RI EA  L  +++     P+V++Y+TLING   
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L EEM+      GV  KPN VT+  ++   CKEG +D A     +M++   
Sbjct: 361 WSKISEAFKLLEEMSEK----GV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD VTYN+LI+G+C A +  EA   + EM  + ++ D VT N I+  LC+  K++EA +
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           LL     RG   +  ++ TL+ G+   G V+ A +L+  M+ 
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE 516



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M + +   P   + N++     K    D   +   ++  +G  PD  TYN L
Sbjct: 366 EAFKLLEEM-SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK G +   F  +  + R     D+V   ++++ LC E ++ EA  L +  +  G 
Sbjct: 425 INGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + ++Y TLI G  + G+   AL L++EM            P+TVTY  II GLC+ G 
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE------IIPSTVTYNCIIGGLCQCGK 538

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++A     ++ +  + PD  TYN+++HG+C   D  +A     +M++   +PDV T N+
Sbjct: 539 TEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNI 598

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME--S 386
           ++  LC  G +++A +L    + +G   +T T++TL+   C  GR++ A  L   ME   
Sbjct: 599 LLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKE 658

Query: 387 MGCKHTVFS 395
           +G  H  ++
Sbjct: 659 LGPDHYTYN 667



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 122/283 (43%), Gaps = 29/283 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+  L     K  + D  L L+  +    + P   TYN +I   C+ G+       L  +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L S   PD   + +++ G C E  + +A     K+     KP+V T + L+ GLC  G  
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGML 609

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL LF    +           +TVTY T+I  LCKEG +D A  L  +M++K + PD 
Sbjct: 610 EKALKLFNTWVSKGKAI------DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDH 663

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP-----------------------DVVT 325
            TYN++I     +    EA   + +M+++G  P                         V 
Sbjct: 664 YTYNAIITALTDSGRIREAEEFMSKMLEKGXLPXQVLQLDXNETVVTSETSEESDSSSVA 723

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           ++  + ELC  GK  +A R+      +G+  + ST+  LMDG 
Sbjct: 724 YSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 123/285 (43%), Gaps = 19/285 (6%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK 131
           CK+   G        EAF   D M   NM+       + N +   L + K  +    L  
Sbjct: 429 CKAGNMG--------EAFRTMDEMGRKNMKMDS---VTLNTILRTLCREKKLEEAYKLLS 477

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
                G F D  +Y  LI  + K G V     +   +      P  V +  +I GLC   
Sbjct: 478 SARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           +  +A +   +L   G  P+  TY+T+++G CR G    A     +M   +       KP
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENS------FKP 591

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  T   ++ GLC EG ++KA +LF     K    D VTYN+LI   C     ++A  LL
Sbjct: 592 DVFTCNILLRGLCMEGMLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLL 651

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            EM ++ + PD  T+N I+  L  +G++ EA   +  M+ +G  P
Sbjct: 652 SEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGXLP 696



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 23/144 (15%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L   L K    D   +L   +    L PD YTYN +I      GR+      + ++
Sbjct: 630 TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689

Query: 169 LRSCFTPDAV-----------------------AFTSLIKGLCAESRIMEAAALFTKLKA 205
           L     P  V                       A++  IK LC E +  +A  +F + K 
Sbjct: 690 LEKGXLPXQVLQLDXNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQ 749

Query: 206 FGCKPNVITYSTLINGLCRTGHTI 229
            G   +  TY  L++GL +   +I
Sbjct: 750 KGITVDKSTYINLMDGLIKRRKSI 773


>gi|308044519|ref|NP_001183314.1| uncharacterized protein LOC100501715 [Zea mays]
 gi|238010730|gb|ACR36400.1| unknown [Zea mays]
          Length = 320

 Score =  167 bits (423), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 97/253 (38%), Positives = 138/253 (54%), Gaps = 6/253 (2%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLK 204
           +ILI CFC +GR+   F   G  LR+ +    V    LIKGLC   R  +A  + F ++ 
Sbjct: 33  DILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKGLCDGKRTGDAMDMVFRRMP 92

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGL 263
             G  P+V +Y+ LI GLC    +  AL L   M ANG    G  C P+ V+Y  +IDGL
Sbjct: 93  ELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANG----GYNCSPDVVSYNIVIDGL 148

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            KEG VDKA  LF +M  +   PD+VTY+S+I G C A   ++A   L +M+ +GV P+ 
Sbjct: 149 FKEGEVDKAYFLFHEMPGQGFPPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNT 208

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +N ++   C  G++ EA RLL+ M   G+  N  T++ L+D +C  GR   A+ +F S
Sbjct: 209 RPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDS 268

Query: 384 MESMGCKHTVFSY 396
           M   G K    +Y
Sbjct: 269 MVRRGQKPNATTY 281



 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 100/294 (34%), Positives = 147/294 (50%), Gaps = 10/294 (3%)

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           C FD  +    +   L   ++L  C       D   + F     TG        N LI  
Sbjct: 14  CAFDIRIRCFCNVGRLDLADILIRCFCNVGRLDLAFAAFGLFLRTGWRVQNVVLNQLIKG 73

Query: 152 FCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--- 207
            C   R      +V  R+    +TPD  ++ +LIKGLCAE +  EA  L   + A G   
Sbjct: 74  LCDGKRTGDAMDMVFRRMPELGYTPDVFSYNALIKGLCAEKKSQEALELLLHMTANGGYN 133

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V++Y+ +I+GL + G    A  LF EM  G G       P+ VTY+++IDGLCK  
Sbjct: 134 CSPDVVSYNIVIDGLFKEGEVDKAYFLFHEMP-GQG-----FPPDLVTYSSVIDGLCKAQ 187

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +DKA+    QM  K + P+   YNSLIHG+C      EA  LL +M   G+Q +VVT+N
Sbjct: 188 AMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVRLLKKMSGGGLQLNVVTYN 247

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +++D  CK G+  EA  + + M+ RG  PN +T+ +L+ G+   G +    +L 
Sbjct: 248 MLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYATKGALVDMHDLL 301



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 11/157 (7%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP L +++ +   L K +  D   +  +++   G+ P+   YN LI+ +C +G++     
Sbjct: 170 PPDLVTYSSVIDGLCKAQAMDKAEASLQQMLYKGVMPNTRPYNSLIHGYCSLGQLVEAVR 229

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L ++       + V +  LI   C   R  EA ++F  +   G KPN  TY +L++G  
Sbjct: 230 LLKKMSGGGLQLNVVTYNMLIDYYCKIGRCAEARSIFDSMVRRGQKPNATTYCSLLHGYA 289

Query: 224 RTG-----HTIVALNLFEEMANGNGKFGVVCKPNTVT 255
             G     H ++ L + +EM   NG      +PN V+
Sbjct: 290 TKGALVDMHDLLDLMIRDEMRQ-NG-----LRPNLVS 320


>gi|410109947|gb|AFV61053.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           salviifolia]
          Length = 431

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 156/293 (53%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P   +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GL  ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L   M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+NP+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 149/272 (54%), Gaps = 6/272 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           AV++ +L+ G      + E   L + + A G +P+V TYS LINGL +      A  LF+
Sbjct: 177 AVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLSKESKMDDADELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ +M  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGDLDSAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   ++ L+ G C  GR   A+++   M S+G
Sbjct: 351 DDVVYTALISGLCQEGRSVDAEKMLREMLSVG 382



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/290 (33%), Positives = 153/290 (52%), Gaps = 16/290 (5%)

Query: 80  GDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           GDI       A  +FD +    +RPS     S+N L     +    D    L   + ++G
Sbjct: 156 GDIRV-----AQSVFDAITKWGLRPSA---VSYNTLMNGYIRLGVLDEGFRLKSAMLASG 207

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD+YTY++LIN   K  ++     +   +L     P+ V FT+LI G C   R+  A 
Sbjct: 208 VQPDVYTYSVLINGLSKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 267

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            ++ ++ +    P++ITY+TLI GLC+ G    A +L ++M+          KP+ +TYT
Sbjct: 268 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG------LKPDKITYT 321

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDG CKEG +D A E   +M  +NI  D V Y +LI G C      +A  +L EM+  
Sbjct: 322 TLIDGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSV 381

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           G+ PD  T+ +I++E CK G + + S+LL+ M   G  P+  T++ LM+G
Sbjct: 382 GLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|18071401|gb|AAL58260.1|AC068923_2 putative membrane-associated protein [Oryza sativa Japonica Group]
          Length = 627

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/321 (31%), Positives = 151/321 (47%), Gaps = 38/321 (11%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
            D ML+ R SP  +T +N +   L K +  D  + +   +  +G+ PD  TYN +++ FC
Sbjct: 104 LDKMLDQRISPNVVT-YNSIIAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVHGFC 162

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             G+     V L ++      PD V + SL+  LC   R  EA  +F  +   G KP++ 
Sbjct: 163 SSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTEARKIFDSMTKRGLKPDIT 222

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNG------KFGV-VC----------------- 249
           TY TL+ G    G  +    L + M   NG       F + VC                 
Sbjct: 223 TYGTLLQGYATKGALVEMHGLLDLMVR-NGIHPNHYVFSILVCAYAKQEKVEEAMLVFSK 281

Query: 250 ------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                  PN VTY T+ID LCK G V+ A   F QM D+ + PD + YNSLIH  C  + 
Sbjct: 282 MRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDK 341

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           W +A  L +EM+D+G+    + FN I+D  CK G++ E+ +L +LM+  GV P+  T   
Sbjct: 342 WEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGVKPDIITLGR 401

Query: 364 LMDGFCLTGRVNHAKELFVSM 384
            +      G       LFV++
Sbjct: 402 FL------GSARRDYSLFVNI 416



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 89/236 (37%), Positives = 125/236 (52%), Gaps = 18/236 (7%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLING 221
           V   +LR    PD  ++  L+ GLC E+R  EA  L   +   G  C P+V++YST+ING
Sbjct: 39  VFDELLRRGI-PDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYSTVING 97

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             + G         ++M +          PN VTY +II  LCK   VDKA E+   M  
Sbjct: 98  FFKEGD-------LDKMLDQR------ISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVK 144

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD +TYNS++HGFC +    EA   L +M   GV+PDVVT+N +MD LCKNG+  E
Sbjct: 145 SGVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDGVEPDVVTYNSLMDYLCKNGRCTE 204

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC--KHTVFS 395
           A ++ + M  RG+ P+ +T+ TL+ G+   G +     L   M   G    H VFS
Sbjct: 205 ARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFS 260



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 86/310 (27%), Positives = 152/310 (49%), Gaps = 17/310 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG--LFPDLYTYN 146
           +A  +FD +L  R   P + S+N+L   L         L L   +   G    PD+ +Y+
Sbjct: 35  DARHVFDELL--RRGIPDVFSYNILLNGLCDENRSQEALELLHIMADDGGDCPPDVVSYS 92

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +IN F K G        L ++L    +P+ V + S+I  LC    + +A  + T +   
Sbjct: 93  TVINGFFKEGD-------LDKMLDQRISPNVVTYNSIIAALCKAQTVDKAMEVLTTMVKS 145

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+ +TY+++++G C +G    A+   ++M +         +P+ VTY +++D LCK 
Sbjct: 146 GVMPDCMTYNSIVHGFCSSGQPKEAIVFLKKMRSDG------VEPDVVTYNSLMDYLCKN 199

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A+++F  M  + + PD+ TY +L+ G+       E + LL  M+  G+ P+   F
Sbjct: 200 GRCTEARKIFDSMTKRGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVF 259

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++++    K  K++EA  +   M  +G+NPN  T+ T++D  C +GRV  A   F  M  
Sbjct: 260 SILVCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMID 319

Query: 387 MGCKHTVFSY 396
            G +     Y
Sbjct: 320 EGLRPDSIVY 329



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 149/333 (44%), Gaps = 36/333 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IFD M   R   P +T++  L    A       +  L   +   G+ P+ Y ++IL
Sbjct: 204 EARKIFDSMTK-RGLKPDITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPNHYVFSIL 262

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + K  +V    +V  ++ +    P+AV + ++I  LC   R+ +A   F ++   G 
Sbjct: 263 VCAYAKQEKVEEAMLVFSKMRQQGLNPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGL 322

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+ I Y++LI+ LC       A  LF EM +       +C  +T+ + +IID  CKEG 
Sbjct: 323 RPDSIVYNSLIHSLCIFDKWEKAEELFLEMLDRG-----IC-LSTIFFNSIIDSHCKEGR 376

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHG------------FCYAN-------------D 303
           V ++ +LF  M    + PD++T    +              F + N             +
Sbjct: 377 VIESGKLFDLMVRIGVKPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVN 436

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            N  N       +    P + T+N+I+  LCKN   D+A R+ + + L  +     TF+ 
Sbjct: 437 TNGGNT----ASNSSGGPFLGTYNIILHGLCKNKLTDDALRMFQNLCLMDLKLEARTFNI 492

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++D     GR + AK+LFV+  S G     ++Y
Sbjct: 493 MIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTY 525



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 85/332 (25%), Positives = 146/332 (43%), Gaps = 28/332 (8%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG  T     E   + D M+     P     F++L    AK +  +  + +F ++   GL
Sbjct: 229 QGYATKGALVEMHGLLDLMVRNGIHPNHYV-FSILVCAYAKQEKVEEAMLVFSKMRQQGL 287

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TY  +I+  CK GRV    +   +++     PD++ + SLI  LC   +  +A  
Sbjct: 288 NPNAVTYGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSLIHSLCIFDKWEKAEE 347

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF ++   G   + I ++++I+  C+ G  I +  LF+ M     + GV  KP+ +T   
Sbjct: 348 LFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMV----RIGV--KPDIITLGR 401

Query: 259 IIDGLCKEG--FV-------------DKAKELFLQMKDKNI------NPDVVTYNSLIHG 297
            +    ++   FV             DK KE  +     N        P + TYN ++HG
Sbjct: 402 FLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFLGTYNIILHG 461

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C     ++A  +   +    ++ +  TFN+++D L K G+ DEA  L       G+ PN
Sbjct: 462 LCKNKLTDDALRMFQNLCLMDLKLEARTFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPN 521

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             T+  + +     G +    +LF+SME  GC
Sbjct: 522 YWTYRLMAENIIGQGLLEELDQLFLSMEDNGC 553



 Score = 72.4 bits (176), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 134/363 (36%), Gaps = 71/363 (19%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M     +P  +T +  +   L K+   +  +  F+++   GL PD   YN L
Sbjct: 274 EAMLVFSKMRQQGLNPNAVT-YGTVIDVLCKSGRVEDAMLYFEQMIDEGLRPDSIVYNSL 332

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL--------- 199
           I+  C   +      +   +L        + F S+I   C E R++E+  L         
Sbjct: 333 IHSLCIFDKWEKAEELFLEMLDRGICLSTIFFNSIIDSHCKEGRVIESGKLFDLMVRIGV 392

Query: 200 ---------------------------FTKLKAFGCK--------------------PNV 212
                                      FT +   G K                    P +
Sbjct: 393 KPDIITLGRFLGSARRDYSLFVNIYFIFTNMSNTGDKEKETPVNTNGGNTASNSSGGPFL 452

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY+ +++GLC+   T  AL +F+ +   +       K    T+  +ID L K G  D+A
Sbjct: 453 GTYNIILHGLCKNKLTDDALRMFQNLCLMD------LKLEARTFNIMIDALLKVGRNDEA 506

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           K+LF+      + P+  TY  +           E + L + M D G   D    N I+ E
Sbjct: 507 KDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSMEDNGCTVDSGMLNFIVRE 566

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS------MES 386
           L + G++  A   L ++  +  +   ST S  +D   L+G       +F+       +ES
Sbjct: 567 LLQRGEITRAGTYLSMIDEKHFSLEASTASLFID--LLSGGKYQEYHIFLPEKYKSFIES 624

Query: 387 MGC 389
           + C
Sbjct: 625 LSC 627


>gi|410109877|gb|AFV61018.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           lycioides]
          Length = 397

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 100 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPS 159

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   + A G +P+V TYS LINGLC+      A  +F+
Sbjct: 160 VVSFNTLMNGYIRLGDMDEGFRLKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFD 219

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 220 EMLDK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLXPDLITYNTLIY 273

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 274 GLCKKGDLKQAHDLIDEMSMKGLKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRL 333

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C   R   A+++   M S+G K    +Y
Sbjct: 334 DDVAYTALISGLCQEERYLDAEKVLREMLSVGLKPDTGTY 373



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/282 (29%), Positives = 150/282 (53%), Gaps = 6/282 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 122 PASLYFFNILMHRFCKEGDIMVAQSVFNAITKWGLRPSVVSFNTLMNGYIRLGDMDEGFR 181

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  +F ++   G  PN +T++TLI+G C
Sbjct: 182 LKNAMHASGVQPDVYTYSVLINGLCKESKMDDANEMFDEMLDKGLVPNGVTFTTLIDGHC 241

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 242 KNGRVDLAMEIYKQMLSQS------LXPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 295

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+  +  +A 
Sbjct: 296 LKPDKITYTTLIDGCCKEGDLETAFEHRKRMIQEXIRLDDVAYTALISGLCQEERYLDAE 355

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++L  M+  G+ P+T T++ +++ FC  G V    +L   M+
Sbjct: 356 KVLREMLSVGLKPDTGTYTMIINEFCKKGDVWTGSKLLKEMQ 397


>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
 gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
          Length = 347

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 153/290 (52%), Gaps = 6/290 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L + +   G  P++ T+N+LI+  C+ G V     V
Sbjct: 49  PNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEV 108

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   TP+++++  L+   C + ++ +A A    + + GC P++++Y+TL+  LCR
Sbjct: 109 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCR 168

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   VA++L  ++  G G     C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 169 NGEVDVAIDLLHQL-KGKG-----CSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGL 222

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY ++  G C  +   EA     ++ D G++P VV +N I+  LCK  +   A  
Sbjct: 223 QPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAID 282

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           L   MI  G  PN ST++ L++G    G V  A++L   + S G  +  F
Sbjct: 283 LFSYMISNGCMPNESTYTILVEGLAYEGLVKEARDLLGQLCSRGVVNKKF 332



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 84/270 (31%), Positives = 144/270 (53%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           + L   +   G  PD+ TYN+++N  C+ GRV      L  +      P+ V++  ++KG
Sbjct: 1   MKLLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKG 60

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           L    R  +A  L  ++   GC PNV+T++ LI+ LCR G    A+ + E++     K+G
Sbjct: 61  LFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIP----KYG 116

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             C PN+++Y  ++   CK+  +DKA      M  +   PD+V+YN+L+   C   + + 
Sbjct: 117 --CTPNSLSYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDV 174

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  LL ++  +G  P ++++N ++D L K GK  EA  LL+ MI +G+ P+  T++T+  
Sbjct: 175 AIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITYTTIAS 234

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C   ++  A   F  ++ MG + TV  Y
Sbjct: 235 GLCREDKIEEAIRTFCKVQDMGIRPTVVLY 264



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 81/253 (32%), Positives = 138/253 (54%), Gaps = 10/253 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV--SHG 161
           PP + +FN+L   L +    +  + + +++   G  P+  +YN L++ FCK  ++  +  
Sbjct: 83  PPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMA 142

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           FV L  + R C+ PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+T+I+G
Sbjct: 143 FVEL-MVSRGCY-PDIVSYNTLLTALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDG 200

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L + G T  AL L +EM +         +P+ +TYTTI  GLC+E  +++A   F +++D
Sbjct: 201 LTKAGKTKEALELLDEMISKG------LQPDIITYTTIASGLCREDKIEEAIRTFCKVQD 254

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             I P VV YN+++ G C   + + A  L   M+  G  P+  T+ ++++ L   G + E
Sbjct: 255 MGIRPTVVLYNAILLGLCKRRETHNAIDLFSYMISNGCMPNESTYTILVEGLAYEGLVKE 314

Query: 342 ASRLLELMILRGV 354
           A  LL  +  RGV
Sbjct: 315 ARDLLGQLCSRGV 327



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 83/189 (43%), Gaps = 41/189 (21%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + L  +   P L S+N +   L K       L L   + S GL PD+ TY          
Sbjct: 180 HQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMISKGLQPDIITY---------- 229

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
                                    T++  GLC E +I EA   F K++  G +P V+ Y
Sbjct: 230 -------------------------TTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLY 264

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           + ++ GLC+   T  A++LF  M + NG     C PN  TYT +++GL  EG V +A++L
Sbjct: 265 NAILLGLCKRRETHNAIDLFSYMIS-NG-----CMPNESTYTILVEGLAYEGLVKEARDL 318

Query: 276 FLQMKDKNI 284
             Q+  + +
Sbjct: 319 LGQLCSRGV 327


>gi|125542535|gb|EAY88674.1| hypothetical protein OsI_10149 [Oryza sativa Indica Group]
          Length = 333

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 85/270 (31%), Positives = 152/270 (56%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           ++  + +   GL PD   Y ++I  FC+ G +S    V   ++     PD V + +L+ G
Sbjct: 1   MAYLREMRCFGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNG 60

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC E R+++A  L  +++  G  P++ T++TLI+G C  G    AL LF+ M N      
Sbjct: 61  LCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQR---- 116

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
              +P+ VTY T+IDG+C++G +DKA +L+  M  + I P+ VTY+ LI   C      +
Sbjct: 117 --LRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVED 174

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   L EM+++G+ P+++T+N I+   C++G + +  + L+ M++  V+P+  T++TL+ 
Sbjct: 175 AFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIH 234

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+    +++ A +L   ME    +  V +Y
Sbjct: 235 GYIKEDKMHDAFKLLNMMEKEKVQPDVVTY 264



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 154/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    + ++ G   +       L +   +   G  PD+ TYN L+N  CK  R+     +
Sbjct: 14  PDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 73

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      PD   FT+LI G C E ++ +A  LF  +     +P+++TY+TLI+G+CR
Sbjct: 74  LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCR 133

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L+++M +          PN VTY+ +ID  C++G V+ A     +M +K I
Sbjct: 134 QGDLDKANDLWDDMHSRE------IFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGI 187

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+++TYNS+I G+C + + ++    L +MM   V PD++T+N ++    K  KM +A +
Sbjct: 188 LPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKVSPDLITYNTLIHGYIKEDKMHDAFK 247

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL +M    V P+  T++ L++GF + G V  A  +F  M + G +   ++Y
Sbjct: 248 LLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTY 299



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K +       L   +   G+ PDL T+  LI+ +C  G++     +
Sbjct: 49  PDVVTYNTLLNGLCKERRLLDAEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQL 108

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD V + +LI G+C +  + +A  L+  + +    PN +TYS LI+  C 
Sbjct: 109 FDTMLNQRLRPDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCE 168

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +EM N     G++  PN +TY +II G C+ G V K ++   +M    +
Sbjct: 169 KGQVEDAFGFLDEMINK----GIL--PNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNKV 222

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD++TYN+LIHG+   +  ++A  LL  M  + VQPDVVT+N++++    +G + EA  
Sbjct: 223 SPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEKVQPDVVTYNMLINGFSVHGNVQEAGW 282

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + E M  +G+ P+  T+ ++++G    G    A +L   M   G
Sbjct: 283 IFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRG 326



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 74/257 (28%), Positives = 124/257 (48%), Gaps = 6/257 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  PP L +F  L          D  L LF  + +  L PD+ TYN LI+  C+ G +  
Sbjct: 80  RGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRLRPDIVTYNTLIDGMCRQGDLDK 139

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +      P+ V ++ LI   C + ++ +A     ++   G  PN++TY+++I 
Sbjct: 140 ANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIK 199

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR+G+        ++M            P+ +TY T+I G  KE  +  A +L   M+
Sbjct: 200 GYCRSGNVSKGQKFLQKMMVNK------VSPDLITYNTLIHGYIKEDKMHDAFKLLNMME 253

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + + PDVVTYN LI+GF    +  EA  +  +M  +G++PD  T+  +++     G   
Sbjct: 254 KEKVQPDVVTYNMLINGFSVHGNVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSK 313

Query: 341 EASRLLELMILRGVNPN 357
           EA +L + M+ RG  P+
Sbjct: 314 EAFQLHDEMLQRGFAPD 330



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 72/235 (30%), Positives = 115/235 (48%), Gaps = 7/235 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD MLN R   P + ++N L   + +    D    L+  ++S  +FP+  TY+I
Sbjct: 103 DKALQLFDTMLNQRLR-PDIVTYNTLIDGMCRQGDLDKANDLWDDMHSREIFPNHVTYSI 161

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G+V   F  L  ++     P+ + + S+IKG C    + +      K+    
Sbjct: 162 LIDSHCEKGQVEDAFGFLDEMINKGILPNIMTYNSIIKGYCRSGNVSKGQKFLQKMMVNK 221

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI+G  +      A  L   M           +P+ VTY  +I+G    G
Sbjct: 222 VSPDLITYNTLIHGYIKEDKMHDAFKLLNMMEKEK------VQPDVVTYNMLINGFSVHG 275

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            V +A  +F +M  K I PD  TY S+I+G   A +  EA  L  EM+ +G  PD
Sbjct: 276 NVQEAGWIFEKMCAKGIEPDRYTYMSMINGHVTAGNSKEAFQLHDEMLQRGFAPD 330


>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 665

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  ++  M     SP   T  +L+ G   + +  +  L+++ R+   G  P++  YN LI
Sbjct: 303 ALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEA-LNIWNRMAEEGFEPNVVAYNTLI 361

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  C  G++     V  ++ R+  +P+   + +LI G      ++ A+ ++ K+   GC 
Sbjct: 362 HGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCI 421

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNV+ Y++++N LCR+     A +L E+M+  N      C PNTVT+ T I GLC  G V
Sbjct: 422 PNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDN------CPPNTVTFNTFIKGLCCSGRV 475

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           + A  LF QM+    +P++ TYN ++ G    N   EA  L+ EM ++G++ ++VT+N I
Sbjct: 476 ECAINLFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTI 535

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
               C  GK +EA +LL  M++ GV P+  T++TL   +C+ G+V  A +L   + + G
Sbjct: 536 FGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLDKLSAGG 594



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 149/290 (51%), Gaps = 14/290 (4%)

Query: 115 GCLAKTKHYDTVLSLFKRLN--------STGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           GC      Y TV+S   +L         S    P++  YN LIN FC+  +V   F++LG
Sbjct: 214 GCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSVYNALINGFCREYKVKEVFLLLG 273

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +++     P+ + ++++I  L     +  A A++ K+   GC PNV T+++L+ G    G
Sbjct: 274 QMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRG 333

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
             + ALN++  MA          +PN V Y T+I GLC  G + +A  +  +M+    +P
Sbjct: 334 RVLEALNIWNRMAEEG------FEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSP 387

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V TY +LI GF  A D   A+ +  +MM  G  P+VV +  +++ LC++    +A  L+
Sbjct: 388 NVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLI 447

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E M      PNT TF+T + G C +GRV  A  LF  ME  GC   + +Y
Sbjct: 448 EKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTY 497



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/308 (28%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E F +   M+  +   P + +++ +   L+   + +  L+++ ++   G  P++YT+  L
Sbjct: 267 EVFLLLGQMVE-KGIDPNVITYSTVISSLSGIGNVELALAVWAKMFVRGCSPNVYTFTSL 325

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +   GRV     +  R+    F P+ VA+ +LI GLC+  ++ EA ++ +K++  GC
Sbjct: 326 MKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGC 385

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PNV TY  LI+G  + G  + A  ++ +M   NG     C PN V YT++++ LC+   
Sbjct: 386 SPNVSTYGALIDGFAKAGDLVGASEIWNKMMT-NG-----CIPNVVVYTSMVNVLCRSSM 439

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A  L  +M   N  P+ VT+N+ I G C +     A  L  +M   G  P++ T+N 
Sbjct: 440 FSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNE 499

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D L K  ++ EA  L+  M  +G+  N  T++T+  GFC  G+   A +L   M   G
Sbjct: 500 VLDGLLKENRIKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGG 559

Query: 389 CKHTVFSY 396
            K    +Y
Sbjct: 560 VKPDAITY 567



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++ +N L     +      V  L  ++   G+ P++ TY+ +I+    +G V     V
Sbjct: 247 PNVSVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAV 306

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++     +P+   FTSL+KG     R++EA  ++ ++   G +PNV+ Y+TLI+GLC 
Sbjct: 307 WAKMFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCS 366

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+++  +M   NG     C PN  TY  +IDG  K G +  A E++ +M     
Sbjct: 367 HGKMGEAVSVSSKMER-NG-----CSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGC 420

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VV Y S+++  C ++ +++A  L+ +M      P+ VTFN  +  LC +G+++ A  
Sbjct: 421 IPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTVTFNTFIKGLCCSGRVECAIN 480

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M   G +PN  T++ ++DG     R+  A EL   ME  G +  + +Y
Sbjct: 481 LFCQMEQYGCSPNIKTYNEVLDGLLKENRIKEALELVTEMEEKGMELNLVTY 532



 Score =  137 bits (346), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 150/316 (47%), Gaps = 43/316 (13%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I++ M       P + ++N L   L         +S+  ++   G  P++ TY  L
Sbjct: 337 EALNIWNRMAE-EGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGAL 395

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ F K G +     +  +++ +   P+ V +TS++  LC  S   +A +L  K+    C
Sbjct: 396 IDGFAKAGDLVGASEIWNKMMTNGCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNC 455

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T++T I GLC +G    A+NLF +M     ++G  C PN  TY  ++DGL KE  
Sbjct: 456 PPNTVTFNTFIKGLCCSGRVECAINLFCQME----QYG--CSPNIKTYNEVLDGLLKENR 509

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A EL  +M++K +  ++VTYN++  GFC    + EA  LL +M+  GV+PD +T+N 
Sbjct: 510 IKEALELVTEMEEKGMELNLVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNT 569

Query: 329 IMDELCKNGKM------------------------------------DEASRLLELMILR 352
           +    C  GK+                                    +EA   L+ M+  
Sbjct: 570 LTYAYCMQGKVKTAIQLLDKLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNE 629

Query: 353 GVNPNTSTFSTLMDGF 368
           G+  N +T++ L+ G 
Sbjct: 630 GICLNAATWNALVRGL 645



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 147/288 (51%), Gaps = 11/288 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ ++   L +    D V  L +++   G+      +  +IN + ++G       +  RI
Sbjct: 81  TYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSEDLFINVINTYRRVGLAEQALKMFYRI 140

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P    +  L+  + +E+R      +++ +K  G +PNV TY+ L+  LC+    
Sbjct: 141 REFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRV 200

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  L  EM+N        C+P+ V+YTT+I  + K G V++A+EL ++ +     P+V
Sbjct: 201 DGACKLLVEMSNKG------CEPDVVSYTTVISSMSKLGKVEEARELSIRFQ-----PNV 249

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             YN+LI+GFC      E   LL +M+++G+ P+V+T++ ++  L   G ++ A  +   
Sbjct: 250 SVYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAK 309

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M +RG +PN  TF++LM G+ + GRV  A  ++  M   G +  V +Y
Sbjct: 310 MFVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAY 357



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 142/297 (47%), Gaps = 24/297 (8%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           +  L +F R+   G  P +  YN L++      R      +   + R    P+   +  L
Sbjct: 131 EQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNIL 190

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA----------LN 233
           +K LC  +R+  A  L  ++   GC+P+V++Y+T+I+ + + G    A          ++
Sbjct: 191 LKALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVS 250

Query: 234 LFEEMANGNGK----------FGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           ++  + NG  +           G + +    PN +TY+T+I  L   G V+ A  ++ +M
Sbjct: 251 VYNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKM 310

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             +  +P+V T+ SL+ G+       EA  +   M ++G +P+VV +N ++  LC +GKM
Sbjct: 311 FVRGCSPNVYTFTSLMKGYFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHGLCSHGKM 370

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            EA  +   M   G +PN ST+  L+DGF   G +  A E++  M + GC   V  Y
Sbjct: 371 GEAVSVSSKMERNGCSPNVSTYGALIDGFAKAGDLVGASEIWNKMMTNGCIPNVVVY 427



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/208 (24%), Positives = 99/208 (47%), Gaps = 11/208 (5%)

Query: 181 TSLIKGLCAESRIMEAAALFTKL---KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           + ++  L  E+ I+ A+  F  +   KAF  +   +TY  +I  L R         L ++
Sbjct: 47  SDVVMRLRTETDIVLASNYFRSIANSKAF--QHTQLTYQIMIEKLGRECDVDGVQYLLQQ 104

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M       G+ C  +   +  +I+   + G  ++A ++F ++++    P V  YN L+  
Sbjct: 105 MK----LEGISCSEDL--FINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDA 158

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
               N +     +   M   G +P+V T+N+++  LCKN ++D A +LL  M  +G  P+
Sbjct: 159 MLSENRFQMIEPIYSNMKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPD 218

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSME 385
             +++T++      G+V  A+EL +  +
Sbjct: 219 VVSYTTVISSMSKLGKVEEARELSIRFQ 246



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 2/123 (1%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N +FG       ++  L L  ++   G+ PD  TYN L   +C  G+V     +L 
Sbjct: 529 LVTYNTIFGGFCNVGKFEEALKLLGKMLVGGVKPDAITYNTLTYAYCMQGKVKTAIQLLD 588

Query: 167 RILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
           ++     + P+  A+TSL+ G+C +  + EA     K+   G   N  T++ L+ GL  +
Sbjct: 589 KLSAGGKWVPEVAAYTSLLWGICNQIGVEEAVLYLDKMLNEGICLNAATWNALVRGLFNS 648

Query: 226 -GH 227
            GH
Sbjct: 649 LGH 651



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 5/168 (2%)

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           ++A N F  +AN         +   +TY  +I+ L +E  VD  + L  QMK + I+   
Sbjct: 60  VLASNYFRSIANSKA-----FQHTQLTYQIMIEKLGRECDVDGVQYLLQQMKLEGISCSE 114

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             + ++I+ +       +A  +   + + G QP V  +N ++D +    +      +   
Sbjct: 115 DLFINVINTYRRVGLAEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSN 174

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G  PN  T++ L+   C   RV+ A +L V M + GC+  V SY
Sbjct: 175 MKRDGKEPNVYTYNILLKALCKNNRVDGACKLLVEMSNKGCEPDVVSY 222


>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
 gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
          Length = 836

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+   + M+  + SP  L ++++    L K +  D    + K ++  G  P+   YN 
Sbjct: 308 DEAYRFKEKMVKEKVSPS-LITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNT 366

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CKMG +S    +   +L    +P++V   SLI+G C   +I +A  +  ++   G
Sbjct: 367 LIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRG 426

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N  ++S +IN LC     + AL+   EM   N       +PN    TT++ GLCK G
Sbjct: 427 LPINQGSFSMVINWLCLKFRFVTALHFIREMLLRN------LRPNDGLLTTLVSGLCKAG 480

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A EL+ ++  K   P++VT N+LIHG C A +  E   LL +M+++G+  D +T+N
Sbjct: 481 KQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYN 540

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   CK GK+ E   L E M+ +G+ P+  TF+ L+ G C   +++ A  L+   +  
Sbjct: 541 TLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKN 600

Query: 388 GCKHTVFSY 396
           G    V++Y
Sbjct: 601 GYVPNVYTY 609



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 102/342 (29%), Positives = 159/342 (46%), Gaps = 38/342 (11%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CK+  QG        EA  ++  +L     P  +TS  L+ G L K  +    L L + +
Sbjct: 477 CKAGKQG--------EAVELWCRLLGKGFVPNIVTSNALIHG-LCKAGNMQETLKLLRDM 527

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
              GL  D  TYN LI+  CK G+V  GF +   +++    PD   F  L+ GLC   +I
Sbjct: 528 LERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKI 587

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-------------- 239
            EA+ L+ + K  G  PNV TY  +I+G C+        NL  E+               
Sbjct: 588 DEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSL 647

Query: 240 ------NGNGKFGVVCKPNT---------VTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 NGN       + +           TY++++ GLC  G VD AK L  +M+ + +
Sbjct: 648 IRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGLVDDAKHLLDEMRKEGL 707

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VV Y ++I G+      N+ N +L EM    + P+  T+ +++D  CK GK  EA++
Sbjct: 708 LPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAK 767

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           LL  M  +G+ P+  T++   +G C  G+V  A ++   M S
Sbjct: 768 LLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFKVCDEMSS 809



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 139/263 (52%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FNLL   L      D    L+      G  P++YTY ++I+ +CK  +V  G  +
Sbjct: 569 PDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKANKVEEGENL 628

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++      ++V + SLI+  C    +  A  L   +K+ G   +  TYS+L++GLC 
Sbjct: 629 LNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCN 688

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM     K G++  PN V YTTII G  K G ++K   +  +M   NI
Sbjct: 689 IGLVDDAKHLLDEMR----KEGLL--PNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNI 742

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+  TY  +I GFC      EA  LL EM ++G+ PD VT+N   + LCK GK++EA +
Sbjct: 743 HPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYNAFTNGLCKEGKVEEAFK 802

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           + + M    V  +  T++TL+DG
Sbjct: 803 VCDEMSSGAVCLDEITYTTLIDG 825



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I D ML+   SP  +T  +L+ G   K+       ++ + +   GL  +  ++++
Sbjct: 378 SEALKIRDDMLSKGISPNSVTLNSLIQG-FCKSDQIGQAENVLEEMIGRGLPINQGSFSM 436

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  C   R       +  +L     P+    T+L+ GLC   +  EA  L+ +L   G
Sbjct: 437 VINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKG 496

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN++T + LI+GLC+ G+    L L  +M      F      + +TY T+I G CKEG
Sbjct: 497 FVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVF------DRITYNTLISGCCKEG 550

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +  EL  +M  K I PD+ T+N L+HG C A+  +EA+ L  E    G  P+V T+ 
Sbjct: 551 KVKEGFELKEEMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYG 610

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V++D  CK  K++E   LL  ++ + +  N+  +++L+  +C+ G +N A  L   M+S 
Sbjct: 611 VMIDGYCKANKVEEGENLLNELVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSR 670

Query: 388 G 388
           G
Sbjct: 671 G 671



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/284 (30%), Positives = 143/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +   L   L K         ++  +   G+ PD++ ++ +IN FCK  R      +
Sbjct: 219 PSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHREDDAIGL 278

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ +    P+ V + ++I GLC   R+ EA     K+      P++ITYS  INGL +
Sbjct: 279 FSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSPSLITYSVFINGLIK 338

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  + +EM+    + G V  PN V Y T+IDG CK G + +A ++   M  K I
Sbjct: 339 LEKIDEANCVLKEMS----ELGFV--PNEVVYNTLIDGYCKMGNISEALKIRDDMLSKGI 392

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+ VT NSLI GFC ++   +A  +L EM+ +G+  +  +F+++++ LC   +   A  
Sbjct: 393 SPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLCLKFRFVTALH 452

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +  M+LR + PN    +TL+ G C  G+   A EL+  +   G
Sbjct: 453 FIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVELWCRLLGKG 496



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 89/298 (29%), Positives = 143/298 (47%), Gaps = 9/298 (3%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           N+RP+   LT+   L   L K       + L+ RL   G  P++ T N LI+  CK G +
Sbjct: 461 NLRPNDGLLTT---LVSGLCKAGKQGEAVELWCRLLGKGFVPNIVTSNALIHGLCKAGNM 517

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +L  +L      D + + +LI G C E ++ E   L  ++   G +P++ T++ L
Sbjct: 518 QETLKLLRDMLERGLVFDRITYNTLISGCCKEGKVKEGFELKEEMVKKGIQPDIYTFNLL 577

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++GLC       A  L+ E      K G V  PN  TY  +IDG CK   V++ + L  +
Sbjct: 578 LHGLCNADKIDEASRLWHECK----KNGYV--PNVYTYGVMIDGYCKANKVEEGENLLNE 631

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           +  K +  + V YNSLI  +C   + N A  L  +M  +GV     T++ +M  LC  G 
Sbjct: 632 LVSKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATYSSLMHGLCNIGL 691

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +D+A  LL+ M   G+ PN   ++T++ G+   G++N    +   M S       F+Y
Sbjct: 692 VDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMSSHNIHPNKFTY 749



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/327 (25%), Positives = 149/327 (45%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  F+ +     K    D  + LF ++   G+ P++ TYN +I+  CK GR+   +  
Sbjct: 254 PDVHLFSTMINAFCKGHREDDAIGLFSKMEKLGVAPNVVTYNNIIHGLCKSGRLDEAYRF 313

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++++   +P  + ++  I GL    +I EA  +  ++   G  PN + Y+TLI+G C+
Sbjct: 314 KEKMVKEKVSPSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCK 373

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD--- 281
            G+   AL + ++M +          PN+VT  ++I G CK   + +A+ +  +M     
Sbjct: 374 MGNISEALKIRDDMLSKG------ISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGL 427

Query: 282 --------------------------------KNINPDVVTYNSLIHGFCYANDWNEANC 309
                                           +N+ P+     +L+ G C A    EA  
Sbjct: 428 PINQGSFSMVINWLCLKFRFVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGKQGEAVE 487

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   ++ +G  P++VT N ++  LCK G M E  +LL  M+ RG+  +  T++TL+ G C
Sbjct: 488 LWCRLLGKGFVPNIVTSNALIHGLCKAGNMQETLKLLRDMLERGLVFDRITYNTLISGCC 547

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+V    EL   M   G +  ++++
Sbjct: 548 KEGKVKEGFELKEEMVKKGIQPDIYTF 574



 Score = 44.3 bits (103), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 43/83 (51%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           +  +G+ P + T   ++  L K  ++ ++  + + + L G+ P+   FST+++ FC   R
Sbjct: 212 LAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINAFCKGHR 271

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
            + A  LF  ME +G    V +Y
Sbjct: 272 EDDAIGLFSKMEKLGVAPNVVTY 294


>gi|356551209|ref|XP_003543970.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
           mitochondrial-like [Glycine max]
          Length = 687

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/273 (35%), Positives = 146/273 (53%), Gaps = 6/273 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    ++  +   G+ P + TYN +++ FCK G V     +L ++     +P+ V +  L
Sbjct: 184 DVAREVYNVMVECGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVL 243

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           + GL     + +A  L   +   G + +V TY  LI G C  G    A  L EEM +   
Sbjct: 244 VNGLSHSGEMEQAKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSR-- 301

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
             G V  P  VTY TI+ GLCK G V  A++L   M +KN+ PD+V+YN+LI+G+    +
Sbjct: 302 --GAV--PTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGN 357

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  L  E+  + + P VVT+N ++D LC+ G +D A RL + MI  G +P+  TF+T
Sbjct: 358 IGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTT 417

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + GFC  G +  AKELF  M + G +   F+Y
Sbjct: 418 FVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAY 450



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/262 (35%), Positives = 146/262 (55%), Gaps = 6/262 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  P + TYN ++   CK GRVS    +L  ++     PD V++ +LI G      I 
Sbjct: 300 SRGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTLIYGYTRLGNIG 359

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  LF +L+     P+V+TY+TLI+GLCR G   VA+ L +EM     K G    P+  
Sbjct: 360 EAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMI----KHG--PDPDVF 413

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+TT + G CK G +  AKELF +M ++ + PD   Y + I G     D ++A  +  EM
Sbjct: 414 TFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEM 473

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           + +G  PD++T+NV +D L K G + EAS L++ M+  G+ P+  T+++++    + G +
Sbjct: 474 LARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHL 533

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A+ LF+ M S G   +V +Y
Sbjct: 534 RKARALFLEMLSKGIFPSVVTY 555



 Score =  150 bits (380), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 156/337 (46%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + ML+ R + P + ++N +   L K         L   + +  L PDL +YN L
Sbjct: 290 EASRLGEEMLS-RGAVPTVVTYNTIMYGLCKWGRVSDARKLLDVMVNKNLMPDLVSYNTL 348

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  + ++G +   F++   +      P  V + +LI GLC    +  A  L  ++   G 
Sbjct: 349 IYGYTRLGNIGEAFLLFAELRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGP 408

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            P+V T++T + G C+ G+  +A  LF+EM N               G  K G   K   
Sbjct: 409 DPDVFTFTTFVRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFG 468

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY   IDGL K G + +A EL  +M    + PD VTY S+IH   
Sbjct: 469 MQEEMLARGFPPDLITYNVFIDGLHKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHL 528

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A    +A  L +EM+ +G+ P VVT+ V++      G++  A      M  +GV+PN  
Sbjct: 529 MAGHLRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVI 588

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ L++G C   +++ A   F  M++ G     ++Y
Sbjct: 589 TYNALINGLCKVRKMDQAYNFFAEMQAKGISPNKYTY 625



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 146/296 (49%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F   L  R   P + ++N L   L +    D  + L   +   G  PD++T+   
Sbjct: 360 EAFLLFAE-LRYRSLAPSVVTYNTLIDGLCRLGDLDVAMRLKDEMIKHGPDPDVFTFTTF 418

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  FCKMG +     +   +L     PD  A+ + I G        +A  +  ++ A G 
Sbjct: 419 VRGFCKMGNLPMAKELFDEMLNRGLQPDRFAYITRIVGELKLGDPSKAFGMQEEMLARGF 478

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ITY+  I+GL + G+   A  L ++M       G+V  P+ VTYT+II      G 
Sbjct: 479 PPDLITYNVFIDGLHKLGNLKEASELVKKMLYN----GLV--PDHVTYTSIIHAHLMAGH 532

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + KA+ LFL+M  K I P VVTY  LIH +        A     EM ++GV P+V+T+N 
Sbjct: 533 LRKARALFLEMLSKGIFPSVVTYTVLIHSYAVRGRLKLAILHFFEMHEKGVHPNVITYNA 592

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +++ LCK  KMD+A      M  +G++PN  T++ L++  C  G    A  L+  M
Sbjct: 593 LINGLCKVRKMDQAYNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDM 648



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 81/261 (31%), Positives = 128/261 (49%), Gaps = 8/261 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD MLN    P        + G L K         + + + + G  PDL TYN+ I+  
Sbjct: 434 LFDEMLNRGLQPDRFAYITRIVGEL-KLGDPSKAFGMQEEMLARGFPPDLITYNVFIDGL 492

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K+G +     ++ ++L +   PD V +TS+I        + +A ALF ++ + G  P+V
Sbjct: 493 HKLGNLKEASELVKKMLYNGLVPDHVTYTSIIHAHLMAGHLRKARALFLEMLSKGIFPSV 552

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ LI+     G   +A+  F EM            PN +TY  +I+GLCK   +D+A
Sbjct: 553 VTYTVLIHSYAVRGRLKLAILHFFEMHEKG------VHPNVITYNALINGLCKVRKMDQA 606

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
              F +M+ K I+P+  TY  LI+  C    W EA  L  +M+D+ +QPD  T   ++  
Sbjct: 607 YNFFAEMQAKGISPNKYTYTILINENCNLGHWQEALRLYKDMLDREIQPDSCTHRSLLKH 666

Query: 333 LCKNGKMDEASRLLELMILRG 353
           L K+ K+    R LE +I  G
Sbjct: 667 LNKDYKL-HVVRHLENVIAAG 686



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 103/235 (43%), Gaps = 45/235 (19%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN---GNGKFGVVCKPNT---------- 253
           G K + I+YS +++ L R G    A  + E++ +    NG   VV               
Sbjct: 76  GFKRSEISYSVILDILARNGLMRSAYCVMEKVVSVKMENGVIDVVSSSEVSMPSVKLILD 135

Query: 254 -----------------VTYTTIIDGLC---------------KEGFVDKAKELFLQMKD 281
                            V Y  +  GL                ++  +D A+E++  M +
Sbjct: 136 LLLWIYVKKSLLEKCLLVFYKMVSKGLLPDVKNCNRVLRLLRDRDNNIDVAREVYNVMVE 195

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             I P VVTYN+++  FC      EA  LL +M   G  P+ VT+NV+++ L  +G+M++
Sbjct: 196 CGICPTVVTYNTMLDSFCKKGMVQEALQLLFQMQAMGCSPNDVTYNVLVNGLSHSGEMEQ 255

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  L++ M+  G+  +  T+  L+ G+C  G++  A  L   M S G   TV +Y
Sbjct: 256 AKELIQDMLRLGLEVSVYTYDPLIRGYCEKGQIEEASRLGEEMLSRGAVPTVVTY 310


>gi|296085044|emb|CBI28459.3| unnamed protein product [Vitis vinifera]
          Length = 973

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/307 (31%), Positives = 155/307 (50%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF + D M   + +P  LT ++++   L +  +     ++ + +   GL P+   Y  L+
Sbjct: 400 AFELLDEMKKRKLAPTVLT-YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLM 458

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
               K GRV    ++L R+      PD   + SLI G C   R+ EA     ++     +
Sbjct: 459 TAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLR 518

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN  TY   I+G  + G   +A   F EM +     GV+  PN   YT +I+G CKEG V
Sbjct: 519 PNAHTYGAFIDGYSKAGEMEIADRYFNEMLS----CGVL--PNVGIYTALIEGHCKEGNV 572

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A  +F  +  + +  DV TY+ LIHG       +EA  +  E+ ++G+ P+  T+N +
Sbjct: 573 TEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFTYNSL 632

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   CK G +D+AS+LLE M ++G+NP+  T++ L+DG C  G +  AK LF  +E  G 
Sbjct: 633 ISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIEGRGL 692

Query: 390 KHTVFSY 396
                +Y
Sbjct: 693 TPNCVTY 699



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 161/318 (50%), Gaps = 13/318 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G++T     EAF +F ++L+ R     + ++++L   L++         +F  L   GL
Sbjct: 569 EGNVT-----EAFSVFRFILSRR-VLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGL 622

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ +TYN LI+  CK G V     +L  +      PD V +  LI GLC    I  A  
Sbjct: 623 LPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKN 682

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF  ++  G  PN +TY+ +++G C++ +   A  L EEM       GV   P+   Y  
Sbjct: 683 LFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEML----LRGV--PPDAFIYNV 736

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I++  CKE   +KA +LF +M +K      V++N+LI G+C +    EAN LL EM+++ 
Sbjct: 737 ILNFCCKEEKFEKALDLFQEMLEKGF-ASTVSFNTLIEGYCKSGKLQEANHLLEEMIEKQ 795

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             P+ VT+  ++D  CK G M EA RL   M  R V P   T+++L+ G+   G ++   
Sbjct: 796 FIPNHVTYTSLIDHNCKAGMMGEAKRLWLEMQERNVMPTAKTYTSLLHGYHNIGNMSEVS 855

Query: 379 ELFVSMESMGCKHTVFSY 396
            LF  M + G +    +Y
Sbjct: 856 ALFEEMVAKGIEPDKMTY 873



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 97/311 (31%), Positives = 149/311 (47%), Gaps = 27/311 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S N L G L K    +    +F  + +  + PD+YTY  +I+  CK+G V     V
Sbjct: 187 PSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRV 246

Query: 165 L------GRILRSC-----------FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L       R+L                PD   +  LI G C E R  EA  +  ++   G
Sbjct: 247 LLEMGEKARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVG 306

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC--KPNTVTYTTIIDGLCK 265
            KP  ITY+ LI+G  R G    A  + +EM        V C  + N + + T+++G+CK
Sbjct: 307 LKPEPITYNALIDGFMRQGDIEQAFRIKDEM--------VACGIEANLIIWNTLLNGVCK 358

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G ++KA E+  +M +K + PD  TY+ LI G C   +   A  LL EM  + + P V+T
Sbjct: 359 AGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLT 418

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++VI++ LC+ G +   + +L  M++ G+ PN   ++TLM      GRV  ++ +   M 
Sbjct: 419 YSVIINGLCRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMR 478

Query: 386 SMGCKHTVFSY 396
             G    VF Y
Sbjct: 479 EQGILPDVFCY 489



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 148/266 (55%), Gaps = 6/266 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K +  D  + L + +   GL PDLYTY+ILIN FC   R     ++L  ++     P+ +
Sbjct: 253 KARLLDEAIELKRSMVDKGLVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPI 312

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            + +LI G   +  I +A  +  ++ A G + N+I ++TL+NG+C+ G    AL + +EM
Sbjct: 313 TYNALIDGFMRQGDIEQAFRIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEM 372

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                  GV  +P++ TY+ +I+G C+   + +A EL  +MK + + P V+TY+ +I+G 
Sbjct: 373 MEK----GV--EPDSQTYSLLIEGHCRGQNMARAFELLDEMKKRKLAPTVLTYSVIINGL 426

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   +    N +L EM+  G++P+ V +  +M    K G+++E+  +LE M  +G+ P+ 
Sbjct: 427 CRCGNLQGTNAILREMVMNGLKPNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDV 486

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
             +++L+ GFC   R+  A+   + M
Sbjct: 487 FCYNSLIIGFCKAKRMEEARTYLMEM 512



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/318 (30%), Positives = 150/318 (47%), Gaps = 29/318 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +  L    AK    +    + +R+   G+ PD++ YN LI  FCK  R+      
Sbjct: 449 PNAVVYTTLMTAHAKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTY 508

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L     P+A  + + I G      +  A   F ++ + G  PNV  Y+ LI G C+
Sbjct: 509 LMEMLERRLRPNAHTYGAFIDGYSKAGEMEIADRYFNEMLSCGVLPNVGIYTALIEGHCK 568

Query: 225 TGHTIVALNLFE---------------EMANG---NGK----FGVVCK-------PNTVT 255
            G+   A ++F                 + +G   NGK    FG+  +       PN  T
Sbjct: 569 EGNVTEAFSVFRFILSRRVLQDVQTYSVLIHGLSRNGKMHEAFGIFSELQEKGLLPNAFT 628

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y ++I G CK+G VDKA +L  +M  K INPD+VTYN LI G C A +   A  L  ++ 
Sbjct: 629 YNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYNILIDGLCKAGEIERAKNLFDDIE 688

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +G+ P+ VT+  ++D  CK+     A +LLE M+LRGV P+   ++ +++  C   +  
Sbjct: 689 GRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLRGVPPDAFIYNVILNFCCKEEKFE 748

Query: 376 HAKELFVSMESMGCKHTV 393
            A +LF  M   G   TV
Sbjct: 749 KALDLFQEMLEKGFASTV 766



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/268 (27%), Positives = 136/268 (50%), Gaps = 11/268 (4%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+   +++L++ + KMG +     V        F P  ++  SL+  L   +++     +
Sbjct: 152 PNSVIFDMLMDSYRKMGFLVEAVNVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKV 211

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG--------KFGVVCK- 250
           F  + A    P+V TY+ +I+  C+ G+   A  +  EM             K  +V K 
Sbjct: 212 FDGMCAHKVLPDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKARLLDEAIELKRSMVDKG 271

Query: 251 --PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+  TY  +I+G C E    +AK + L+M D  + P+ +TYN+LI GF    D  +A 
Sbjct: 272 LVPDLYTYDILINGFCMEKRSREAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAF 331

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  EM+  G++ +++ +N +++ +CK GKM++A  +++ M+ +GV P++ T+S L++G 
Sbjct: 332 RIKDEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGH 391

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C    +  A EL   M+      TV +Y
Sbjct: 392 CRGQNMARAFELLDEMKKRKLAPTVLTY 419



 Score = 45.8 bits (107), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 66/147 (44%), Gaps = 9/147 (6%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           N+ P+    TS  LL G      +   V +LF+ + + G+ PD  TY ++I+ +C+ G V
Sbjct: 830 NVMPTAKTYTS--LLHG-YHNIGNMSEVSALFEEMVAKGIEPDKMTYYVMIDAYCREGNV 886

Query: 159 SHG------FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
                     +V G  ++S F       + + +G      + EAA +   +  FG   N 
Sbjct: 887 MEACKLKDEILVKGMPMKSGFRLGLPTCSVIARGFQIAGNMDEAAEVLRSMVKFGWVSNT 946

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMA 239
            +   L++G     ++  + NL ++MA
Sbjct: 947 TSLGDLVDGNQNGANSEDSDNLLKQMA 973


>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 950

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FNL+   L + + +   L+++ ++    L PD+ TY ILI+  CK  +     V+
Sbjct: 161 PDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVL 220

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      P+ + ++ ++ GLC   +I +A  LF+K++A GC  ++ITY+ L+NG C+
Sbjct: 221 FDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCK 280

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G+   A  L + +       GV+       Y  +I+GL +    ++A   + +M  +NI
Sbjct: 281 SGYLDDAFTLLQLLTKDGHILGVI------GYGCLINGLFRARRYEEAHMWYQKMLRENI 334

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+ Y  +I G        EA  LL EM ++G++PD + +N ++   C  G +DEA  
Sbjct: 335 KPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAES 394

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   +      PN  T+S L+ G C  G +N A+ +F  ME +GC  +V ++
Sbjct: 395 LRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTF 446



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 172/385 (44%), Gaps = 90/385 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +FD M + R   P    ++++   L + K       LF ++ ++G   DL TYN+
Sbjct: 215 QDALVLFDEMTD-RGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 148 LINCFCKMGRVSHGFVVLG-----------------------------------RILRSC 172
           L+N FCK G +   F +L                                    ++LR  
Sbjct: 274 LLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLREN 333

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD + +T +I+GL  E R+ EA  L  ++   G +P+ I Y+ LI G C  G+   A 
Sbjct: 334 IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAE 393

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L  E++  +      C PN  TY+ +I G+CK G ++KA+ +F +M+     P VVT+N
Sbjct: 394 SLRLEISKHD------CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFN 447

Query: 293 SLIHGFCYANDWNEANCL------------------------------------------ 310
           SLI+G C AN   EA  L                                          
Sbjct: 448 SLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMI 507

Query: 311 ------LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
                 L++++D GV PD+ T+N++++  CK G ++ A +L + M L+G  P++ T+ TL
Sbjct: 508 LKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTL 567

Query: 365 MDGFCLTGRVNHAKELFVSMESMGC 389
           +DG    GR   A E+F  M   GC
Sbjct: 568 IDGLYRAGRNEDALEIFEQMVKKGC 592



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 149/321 (46%), Gaps = 58/321 (18%)

Query: 114 FGCLA----KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +GCL     + + Y+     ++++    + PD+  Y I+I    + GRV+    +LG + 
Sbjct: 306 YGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMT 365

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD + + +LIKG C    + EA +L  ++    C PN  TYS LI G+C+ G   
Sbjct: 366 ERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLIN 425

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK------------------------ 265
            A ++F+EM     K G  C P+ VT+ ++I+GLCK                        
Sbjct: 426 KAQHIFKEME----KLG--CLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFL 479

Query: 266 ------------------------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                                    G + KA +L +Q+ D  + PD+ TYN LI+GFC  
Sbjct: 480 RLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKF 539

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            + N A  L  EM  +G  PD VT+  ++D L + G+ ++A  + E M+ +G  P +ST+
Sbjct: 540 GNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTY 599

Query: 362 STLMDGFCLTGRVNHAKELFV 382
            T+M   C    ++ A  +++
Sbjct: 600 KTIMTWSCRENNISLALSVWM 620



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/314 (25%), Positives = 149/314 (47%), Gaps = 41/314 (13%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           +L+ G L K   ++    + + L ++ +      +++LI  + + G           +  
Sbjct: 97  DLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRD 156

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD  AF  ++  L  +   + A A++ ++      P+V+TY  LI+GLC+T  T  
Sbjct: 157 FDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQD 216

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL LF+EM +     G++  PN + Y+ ++ GLC+   +  A+ LF +M+    N D++T
Sbjct: 217 ALVLFDEMTDR----GIL--PNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLIT 270

Query: 291 YNSLIHGFC---YAND--------------------------------WNEANCLLIEMM 315
           YN L++GFC   Y +D                                + EA+    +M+
Sbjct: 271 YNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKML 330

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            + ++PDV+ + +++  L + G++ EA  LL  M  RG+ P+T  ++ L+ GFC  G ++
Sbjct: 331 RENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLD 390

Query: 376 HAKELFVSMESMGC 389
            A+ L + +    C
Sbjct: 391 EAESLRLEISKHDC 404



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 111/235 (47%), Gaps = 6/235 (2%)

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           + VL  +  S     + AF+ LI+         +A   F+ ++ F CKP++  ++ +++ 
Sbjct: 113 WKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFSLMRDFDCKPDLFAFNLILHF 172

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L R    ++AL ++ +M   N        P+ VTY  +I GLCK      A  LF +M D
Sbjct: 173 LVRKEAFLLALAVYNQMLKCN------LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTD 226

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + I P+ + Y+ ++ G C A    +A  L  +M   G   D++T+NV+++  CK+G +D+
Sbjct: 227 RGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDD 286

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  LL+L+   G       +  L++G     R   A   +  M     K  V  Y
Sbjct: 287 AFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLY 341



 Score = 75.5 bits (184), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVL------------SLFKRLNS-TGLFPDLYTYNILINC 151
           P + +FN L   L K    +               SLF RL+  T    D+ +  +++  
Sbjct: 441 PSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMER 500

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            C+ G +   + +L +++ S   PD   +  LI G C    I  A  LF +++  G  P+
Sbjct: 501 LCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPD 560

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY TLI+GL R G    AL +FE+M          C P + TY TI+   C+E  +  
Sbjct: 561 SVTYGTLIDGLYRAGRNEDALEIFEQMVKKG------CVPESSTYKTIMTWSCRENNISL 614

Query: 272 AKELFLQ 278
           A  ++++
Sbjct: 615 ALSVWMK 621


>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
 gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
          Length = 724

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/320 (31%), Positives = 165/320 (51%), Gaps = 31/320 (9%)

Query: 88  NEAFC-IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA   ++D M+N     P + +F+ L   L K   + + L L   +++ G  P+L TY 
Sbjct: 363 NEATAFVYDKMIN-NGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYT 421

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI+ FCK G++    ++L  +L   F+ + V + +LI  LC   +I EA  +F ++ + 
Sbjct: 422 ILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMFGEMSSK 481

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM------ANG------------------- 241
           GCKP++ T+++LI GLCR      AL L+ +M      AN                    
Sbjct: 482 GCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRRGEIQEA 541

Query: 242 ----NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
               N      C  + +TY  +I  LCK G V+K   LF +M  K + P ++T N LI+G
Sbjct: 542 LKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNILING 601

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC A   + A   + +M+ +G  PD+VT+N +++ LCK G++ EA  L E +   G+ P+
Sbjct: 602 FCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPD 661

Query: 358 TSTFSTLMDGFCLTGRVNHA 377
           + T++TL+   C  G  + A
Sbjct: 662 SITYNTLICWLCREGAFDDA 681



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 107/325 (32%), Positives = 159/325 (48%), Gaps = 40/325 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +  L   L+K    D  L L + +   G  PD+ T+N +I  FC++ RV  G  +
Sbjct: 243 PNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKL 302

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--------------------- 203
           + R++   FTP+ + +  L+ GLC   RI EA AL +K+                     
Sbjct: 303 VDRMILKGFTPNDMTYGYLMHGLCKTCRIDEAQALLSKVPGPNVVHFNTLVNGFVRNGRL 362

Query: 204 ---KAF--------GCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKP 251
               AF        G  P+V T+STL+NGLC+ G    AL L  +M A G       CKP
Sbjct: 363 NEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG-------CKP 415

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N  TYT +IDG CK+G +++A  +  +M  K  + + V YN+LI   C     +EA  + 
Sbjct: 416 NLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALCKHGKIHEALDMF 475

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM  +G +PD+ TFN ++  LC+  +M++A  L   M+L GV  N+ TF+TL+  F   
Sbjct: 476 GEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFNTLIHAFLRR 535

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G +  A +L   M   GC     +Y
Sbjct: 536 GEIQEALKLVNDMLFRGCPLDEITY 560



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 12/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E   + D M+    +P  +T   L+ G L KT   D   +L  ++      P++  +N L
Sbjct: 298 EGAKLVDRMILKGFTPNDMTYGYLMHG-LCKTCRIDEAQALLSKVPG----PNVVHFNTL 352

Query: 149 INCFCKMGRVSHGFV-VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +N F + GR++     V  +++ + + PD   F++L+ GLC +     A  L   + A G
Sbjct: 353 VNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKG 412

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKPN+ TY+ LI+G C+ G    A  +  EM             NTV Y  +I  LCK G
Sbjct: 413 CKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSL------NTVGYNALISALCKHG 466

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +A ++F +M  K   PD+ T+NSLI G C  ++  +A  L  +M+ +GV  + VTFN
Sbjct: 467 KIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEGVIANSVTFN 526

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++    + G++ EA +L+  M+ RG   +  T++ L+   C TG V     LF  M   
Sbjct: 527 TLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRK 586

Query: 388 GCKHTVFS 395
           G   ++ +
Sbjct: 587 GLTPSIIT 594



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 82/293 (27%), Positives = 151/293 (51%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLS-LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P +  FN L     +    +   + ++ ++ + G  PD++T++ L+N  CK G       
Sbjct: 344 PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALE 403

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++  +      P+   +T LI G C + ++ EA  +  ++   G   N + Y+ LI+ LC
Sbjct: 404 LVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGYNALISALC 463

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    AL++F EM++        CKP+  T+ ++I GLC+   ++ A  L+  M  + 
Sbjct: 464 KHGKIHEALDMFGEMSSKG------CKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLEG 517

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  + VT+N+LIH F    +  EA  L+ +M+ +G   D +T+N ++  LCK G +++  
Sbjct: 518 VIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGAVEKGL 577

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L E MI +G+ P+  T + L++GFC  G+V++A E    M   G    + +Y
Sbjct: 578 GLFEEMIRKGLTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTY 630



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 125/261 (47%), Gaps = 6/261 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             +N L   L K       L +F  ++S G  PD++T+N LI   C++  +     +   
Sbjct: 453 VGYNALISALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRD 512

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++      ++V F +LI        I EA  L   +   GC  + ITY+ LI  LC+TG 
Sbjct: 513 MVLEGVIANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLDEITYNGLIKALCKTGA 572

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
               L LFEEM            P+ +T   +I+G C  G V  A E    M  +  +PD
Sbjct: 573 VEKGLGLFEEMIRKG------LTPSIITCNILINGFCTAGKVHNALEFMRDMIHRGFSPD 626

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +VTYNSLI+G C      EA  L  ++  +G+QPD +T+N ++  LC+ G  D+A  LL 
Sbjct: 627 IVTYNSLINGLCKRGRIQEALNLFEKLQAEGIQPDSITYNTLICWLCREGAFDDACFLLY 686

Query: 348 LMILRGVNPNTSTFSTLMDGF 368
             +  G  PN  T++ L+  F
Sbjct: 687 RGVENGFVPNDVTWNILVYNF 707



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 144/293 (49%), Gaps = 11/293 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L          ++F  + S G+ P+ YT+ +++   C +  V +  ++
Sbjct: 173 PSFRSYNVVLDVLVVGNCPSVASNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLL 232

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +    P+++ + +LI  L    R+ EA  L  ++   GC P+V T++T+I G CR
Sbjct: 233 LRDMTKHGCVPNSMIYQTLIDALSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCR 292

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               +    L + M            PN +TY  ++ GLCK   +D+A+ L      K  
Sbjct: 293 LNRVLEGAKLVDRMILKG------FTPNDMTYGYLMHGLCKTCRIDEAQALL----SKVP 342

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIE-MMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            P+VV +N+L++GF      NEA   + + M++ G  PDV TF+ +++ LCK G    A 
Sbjct: 343 GPNVVHFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSAL 402

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+  M  +G  PN +T++ L+DGFC  G++  A  +   M + G       Y
Sbjct: 403 ELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREMLTKGFSLNTVGY 455



 Score =  101 bits (251), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 67/180 (37%), Positives = 92/180 (51%), Gaps = 9/180 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + ML  R  P    ++N L   L KT   +  L LF+ +   GL P + T NI
Sbjct: 539 QEALKLVNDML-FRGCPLDEITYNGLIKALCKTGAVEKGLGLFEEMIRKGLTPSIITCNI 597

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN FC  G+V +    +  ++   F+PD V + SLI GLC   RI EA  LF KL+A G
Sbjct: 598 LINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFEKLQAEG 657

Query: 208 CKPNVITYSTLINGLCRTGHTIVA-LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            +P+ ITY+TLI  LCR G    A   L+  + NG         PN VT+  ++    K+
Sbjct: 658 IQPDSITYNTLICWLCREGAFDDACFLLYRGVENG-------FVPNDVTWNILVYNFGKQ 710



 Score = 89.0 bits (219), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/264 (28%), Positives = 123/264 (46%), Gaps = 16/264 (6%)

Query: 124 DTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV---- 178
           +T + +FK   +  G       Y +LI+   K+G  + GF V+ R+L        V    
Sbjct: 85  ETSMEIFKWAGAQKGYCHSFSVYYLLID---KLG-AAAGFKVIDRLLLQMKEEGIVFRES 140

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
            F  ++K         +A  L   +K  + C+P+  +Y+ +++ L       VA N+F +
Sbjct: 141 LFILIMKYYGRAGLPGQATRLLLDMKGVYCCEPSFRSYNVVLDVLVVGNCPSVASNVFYD 200

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M +     GV   PN  T+  ++  LC    VD A  L   M      P+ + Y +LI  
Sbjct: 201 MLSK----GV--SPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDA 254

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
               +  +EA  LL EM   G  PDV TFN ++   C+  ++ E ++L++ MIL+G  PN
Sbjct: 255 LSKRDRVDEALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVDRMILKGFTPN 314

Query: 358 TSTFSTLMDGFCLTGRVNHAKELF 381
             T+  LM G C T R++ A+ L 
Sbjct: 315 DMTYGYLMHGLCKTCRIDEAQALL 338


>gi|242046334|ref|XP_002461038.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
 gi|241924415|gb|EER97559.1| hypothetical protein SORBIDRAFT_02g039560 [Sorghum bicolor]
          Length = 595

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/340 (30%), Positives = 164/340 (48%), Gaps = 14/340 (4%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPP-LTSFNLLFGCLA 118
           V+D  S    L   C+  G     A +      + D      P+  P   S+  +   L 
Sbjct: 80  VRDAVSYNTVLAALCRRGGDHLRQARS-----LLVDMSREAHPAARPNAVSYTTVMRGLC 134

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
            ++     ++L + + ++G+  D+ TY  LI   C    +     +L  +  S   P+ V
Sbjct: 135 ASRRTGEAVALLRSMQASGVRADVVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVV 194

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            ++ L++G C   R  +   +F  +   G KP+VI ++ LI+ LC+ G T  A  + + M
Sbjct: 195 VYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMM 254

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      +PN VTY  +I+ LCKEG V +A  L  +M DK + PDVVTYN+LI G 
Sbjct: 255 VQRG------LEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGL 308

Query: 299 CYANDWNEANCLLIEMM--DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
               + +EA   L EM+  D  V+PDVVTFN ++  LCK G+M +A ++ E+M  RG   
Sbjct: 309 SGVLEMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMC 368

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  T++ L+ GF    +V  A  L   +   G +   F+Y
Sbjct: 369 NLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTY 408



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 158/327 (48%), Gaps = 44/327 (13%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  R   P + ++N+L   L K       L+L K ++  G+ PD+ TYN LI     + 
Sbjct: 253 MMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSGVL 312

Query: 157 RVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            +      L  +++  +   PD V F S+I GLC   R+ +A  +   +   GC  N++T
Sbjct: 313 EMDEAMSFLEEMIQGDTVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVT 372

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG------------ 262
           Y+ LI G  R     +A+NL +E+A          +P++ TY+ +I+G            
Sbjct: 373 YNYLIGGFLRVHKVKMAMNLMDELAISG------LEPDSFTYSILINGFSKMWEVDRAEK 426

Query: 263 -----------------------LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                                  +C++G +++A  LF +M DKN   D + Y+++IHG C
Sbjct: 427 FLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEM-DKNCGLDAIAYSTMIHGAC 485

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            + D      L+ +M+D+G+ PD VT++++++   K G ++EA R+L+ M   G  P+ +
Sbjct: 486 KSGDMKTVKQLIQDMLDEGLAPDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVA 545

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMES 386
            F +L+ G+   G+ +   +L   M +
Sbjct: 546 VFDSLIKGYSAEGQTDKVLKLIHEMRA 572



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 148/292 (50%), Gaps = 8/292 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L      D  L L   +  +G+ P++  Y+ L+  +C+ GR      V  
Sbjct: 158 VVTYGTLIRGLCDASELDAALELLDEMCGSGVQPNVVVYSCLLRGYCRSGRWQDVGKVFE 217

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    PD + FT LI  LC E +  +AA +   +   G +PNV+TY+ LIN LC+ G
Sbjct: 218 DMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKVKDMMVQRGLEPNVVTYNVLINSLCKEG 277

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNI 284
               AL L +EM +     GV   P+ VTY T+I GL     +D+A     +M   D  +
Sbjct: 278 SVREALTLRKEMDDK----GVA--PDVVTYNTLIAGLSGVLEMDEAMSFLEEMIQGDTVV 331

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVT+NS+IHG C      +A  +   M ++G   ++VT+N ++    +  K+  A  
Sbjct: 332 EPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMN 391

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L++ + + G+ P++ T+S L++GF     V+ A++   +M   G K  +F Y
Sbjct: 392 LMDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHY 443



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 79/281 (28%), Positives = 140/281 (49%), Gaps = 4/281 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L     ++  +  V  +F+ ++  G+ PD+  +  LI+  CK G+      V
Sbjct: 191 PNVVVYSCLLRGYCRSGRWQDVGKVFEDMSRRGIKPDVIMFTGLIDDLCKEGKTGKAAKV 250

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    P+ V +  LI  LC E  + EA  L  ++   G  P+V+TY+TLI GL  
Sbjct: 251 KDMMVQRGLEPNVVTYNVLINSLCKEGSVREALTLRKEMDDKGVAPDVVTYNTLIAGLSG 310

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A++  EEM  G+     V +P+ VT+ ++I GLCK G + +A ++   M ++  
Sbjct: 311 VLEMDEAMSFLEEMIQGD----TVVEPDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGC 366

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++VTYN LI GF   +    A  L+ E+   G++PD  T++++++   K  ++D A +
Sbjct: 367 MCNLVTYNYLIGGFLRVHKVKMAMNLMDELAISGLEPDSFTYSILINGFSKMWEVDRAEK 426

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            L  M  RG+      +  L+   C  G +  A  LF  M+
Sbjct: 427 FLCTMRQRGIKAELFHYIPLLAAMCQQGMMERAMGLFNEMD 467



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 68/261 (26%), Positives = 117/261 (44%), Gaps = 7/261 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L K       + + + +   G   +L TYN LI  F ++ +V     +
Sbjct: 333 PDVVTFNSVIHGLCKIGRMTQAVKVREMMAERGCMCNLVTYNYLIGGFLRVHKVKMAMNL 392

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +  S   PD+  ++ LI G      +  A      ++  G K  +  Y  L+  +C+
Sbjct: 393 MDELAISGLEPDSFTYSILINGFSKMWEVDRAEKFLCTMRQRGIKAELFHYIPLLAAMCQ 452

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ LF EM          C  + + Y+T+I G CK G +   K+L   M D+ +
Sbjct: 453 QGMMERAMGLFNEMDKN-------CGLDAIAYSTMIHGACKSGDMKTVKQLIQDMLDEGL 505

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTY+ LI+ +    D  EA  +L +M   G  PDV  F+ ++      G+ D+  +
Sbjct: 506 APDAVTYSMLINMYAKLGDLEEAERVLKQMTASGFVPDVAVFDSLIKGYSAEGQTDKVLK 565

Query: 345 LLELMILRGVNPNTSTFSTLM 365
           L+  M  + V  +    ST++
Sbjct: 566 LIHEMRAKNVAFDPKIISTII 586


>gi|255660782|gb|ACU25560.1| pentatricopeptide repeat-containing protein [Verbena halei]
          Length = 418

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++     G    LY +NIL++ F K G +     V   I +    P 
Sbjct: 111 LMKLKYFKLVWGFYEESLECGYPASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +L+ G      + E   L   ++A G + +V TYS LINGLC+      A  LF+
Sbjct: 171 VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFD 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+IDG CK   VD A E++ QM  ++++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQSLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  
Sbjct: 285 GLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 345 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTY 384



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/273 (33%), Positives = 147/273 (53%), Gaps = 11/273 (4%)

Query: 90  AFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           A  +FD +   ++RPS   + SFN L     K    D    L   + ++G+  D+YTY++
Sbjct: 155 AQSVFDAITKWSLRPS---VVSFNTLMNGYIKLGDLDEGFRLKNAMQASGVQSDVYTYSV 211

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   +L +   P+ V FT+LI G C   R+  A  ++ ++ +  
Sbjct: 212 LINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHCKNRRVDVAMEIYKQMLSQS 271

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ITY+TLI GLC+ G    A +L +EM+          KP+ +TYTT+IDG CKEG
Sbjct: 272 LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG------LKPDKITYTTLIDGNCKEG 325

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A E   +M  +NI  D V Y +LI G C      +A  +L EM+  G++P++ T+ 
Sbjct: 326 DLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPEIGTYT 385

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           +I++E C+ G +    +LL+ M   G  P+  T
Sbjct: 386 MIINEFCEKGDVWTGLKLLKEMQRDGYMPSVVT 418



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 147/285 (51%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +    L P + ++N L+N + K+G +  GF 
Sbjct: 133 PASLYFFNILMHSFVKEGEIRLAQSVFDAITKWSLRPSVVSFNTLMNGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S    D   ++ LI GLC  S++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKNAMQASGVQSDVYTYSVLINGLCKASKMDDANELFDEMLDNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +     VA+ ++++M + +        P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KNRRVDVAMEIYKQMLSQS------LSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGNCKEGDLETAFEYRKRMIKENIRLDDVAYTALISGLCQEGRSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P   T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPEIGTYTMIINEFCEKGDVWTGLKLLKEMQRDG 411


>gi|222623994|gb|EEE58126.1| hypothetical protein OsJ_09025 [Oryza sativa Japonica Group]
          Length = 1269

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/278 (32%), Positives = 143/278 (51%), Gaps = 6/278 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K + +DT   +   +   G   +  TYN+LI   C+ G V   F     +      PD  
Sbjct: 234 KVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGF 293

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            + +LI GLC   R  EA AL  ++     KPNV+ Y+ LI+G  R G+   A  + +EM
Sbjct: 294 TYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEM 353

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      +PN +TY  ++ GLCK G +D+A  L  QM   +  PD +TYN +I G 
Sbjct: 354 VAAG------VQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGH 407

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
              +   +A  LL EM + G+ P+V T+++++  LC++G+ ++AS LLE M  +G+ PN 
Sbjct: 408 FRHHSKKDAFRLLSEMENAGISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNA 467

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             ++ L+ G+C  G V+ A E+F  M  +     ++ Y
Sbjct: 468 FVYAPLISGYCREGNVSLACEIFDKMTKVNVLPDLYCY 505



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + D M      P  +   NL+ G + +  + D    + K + + G+ P+  TY+ 
Sbjct: 309 NEAKALLDEMSCAELKPNVVVYANLIDGFM-REGNADEAFKMIKEMVAAGVQPNKITYDN 367

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+   CKMG++    ++L +++R    PD + +  +I+G        +A  L ++++  G
Sbjct: 368 LVRGLCKMGQMDRASLLLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAG 427

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PNV TYS +I+GLC++G    A +L EEM           KPN   Y  +I G C+EG
Sbjct: 428 ISPNVYTYSIMIHGLCQSGEPEKASDLLEEMTTKG------LKPNAFVYAPLISGYCREG 481

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V  A E+F +M   N+ PD+  YNSLI G        E+     +M ++G+ P+  T++
Sbjct: 482 NVSLACEIFDKMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYS 541

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++    KNG ++ A +L++ M+  G+ PN   +  L++ +  +  +      F SM   
Sbjct: 542 GLIHGYLKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQ 601

Query: 388 G 388
           G
Sbjct: 602 G 602



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/268 (32%), Positives = 138/268 (51%), Gaps = 7/268 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K+   + V S FK +   G+  D   Y ILI+     G +   F VL  I ++   PD  
Sbjct: 584 KSDDIEKVSSTFKSMLDQGVMLDNRIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVH 643

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            ++SLI GLC  +   +A  +  ++   G  PN++ Y+ LI+GLC++G    A N+F  +
Sbjct: 644 VYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYARNVFNSI 703

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                  G+V  PN VTYT++IDG CK G +  A  L+ +M    I PD   Y+ L  G 
Sbjct: 704 LAK----GLV--PNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 757

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             A D  +A  L+ EM  +G    + +FN ++D  CK GKM E  +LL +++ RG+ PN 
Sbjct: 758 SSAGDLEQAMFLIEEMFLRG-HASISSFNNLVDGFCKRGKMQETLKLLHVIMGRGLVPNA 816

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            T   ++ G    G+++    +FV ++ 
Sbjct: 817 LTIENIISGLSEAGKLSEVHTIFVELQQ 844



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N+L   L ++   +      K +   GL PD +TY  LIN  CK  R +    +L  
Sbjct: 258 VTYNVLIAGLCRSGAVEEAFGFKKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDE 317

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +  +   P+ V + +LI G   E    EA  +  ++ A G +PN ITY  L+ GLC+ G 
Sbjct: 318 MSCAELKPNVVVYANLIDGFMREGNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQ 377

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  L ++M   + +      P+T+TY  II+G  +      A  L  +M++  I+P+
Sbjct: 378 MDRASLLLKQMVRDSHR------PDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPN 431

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V TY+ +IHG C + +  +A+ LL EM  +G++P+   +  ++   C+ G +  A  + +
Sbjct: 432 VYTYSIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFD 491

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M    V P+   +++L+ G    GRV  + + F  M+  G     F+Y
Sbjct: 492 KMTKVNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTY 540



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/381 (26%), Positives = 168/381 (44%), Gaps = 55/381 (14%)

Query: 62  DRASLEQFLKERCKSSGQGDITAI-----------TPNEAFCIFDYMLNMRPSPPPLTSF 110
           DRASL   LK+  + S + D               +  +AF +   M N   SP   T +
Sbjct: 379 DRASL--LLKQMVRDSHRPDTITYNLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYT-Y 435

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           +++   L ++   +    L + + + GL P+ + Y  LI+ +C+ G VS    +  ++ +
Sbjct: 436 SIMIHGLCQSGEPEKASDLLEEMTTKGLKPNAFVYAPLISGYCREGNVSLACEIFDKMTK 495

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD   + SLI GL    R+ E+   F +++  G  PN  TYS LI+G  + G    
Sbjct: 496 VNVLPDLYCYNSLIFGLSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGYLKNGDLES 555

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN----- 285
           A  L + M +         KPN V Y  +++   K   ++K    F  M D+ +      
Sbjct: 556 AEQLVQRMLDTG------LKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDNRI 609

Query: 286 ------------------------------PDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
                                         PDV  Y+SLI G C   D  +A  +L EM 
Sbjct: 610 YGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDEMS 669

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            +GV P++V +N ++D LCK+G +  A  +   ++ +G+ PN  T+++L+DG C  G ++
Sbjct: 670 KKGVDPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDGSCKVGDIS 729

Query: 376 HAKELFVSMESMGCKHTVFSY 396
           +A  L+  M + G     F Y
Sbjct: 730 NAFYLYNEMLATGITPDAFVY 750



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 158/324 (48%), Gaps = 43/324 (13%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M  +   P      +L+FG L+K    +     F ++   GL P+ +TY+ LI+ +
Sbjct: 489 IFDKMTKVNVLPDLYCYNSLIFG-LSKVGRVEESTKYFAQMQERGLLPNEFTYSGLIHGY 547

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI---------------------KGLCAES 191
            K G +     ++ R+L +   P+ V +  L+                     +G+  ++
Sbjct: 548 LKNGDLESAEQLVQRMLDTGLKPNDVIYIDLLESYFKSDDIEKVSSTFKSMLDQGVMLDN 607

Query: 192 RI-------------MEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           RI             MEAA  + + ++  G  P+V  YS+LI+GLC+T     A  + +E
Sbjct: 608 RIYGILIHNLSSSGNMEAAFRVLSGIEKNGSVPDVHVYSSLISGLCKTADREKAFGILDE 667

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M+    K GV   PN V Y  +IDGLCK G +  A+ +F  +  K + P+ VTY SLI G
Sbjct: 668 MS----KKGV--DPNIVCYNALIDGLCKSGDISYARNVFNSILAKGLVPNCVTYTSLIDG 721

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C   D + A  L  EM+  G+ PD   ++V+       G +++A  L+E M LRG + +
Sbjct: 722 SCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGCSSAGDLEQAMFLIEEMFLRG-HAS 780

Query: 358 TSTFSTLMDGFCLTGRVNHAKELF 381
            S+F+ L+DGFC  G++    +L 
Sbjct: 781 ISSFNNLVDGFCKRGKMQETLKLL 804



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 116/215 (53%), Gaps = 6/215 (2%)

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           S ++  C       A  +  +++  GC  N +TY+ LI GLCR+G    A    ++M + 
Sbjct: 227 SALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGFKKDMED- 285

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
              +G+V  P+  TY  +I+GLCK    ++AK L  +M    + P+VV Y +LI GF   
Sbjct: 286 ---YGLV--PDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVYANLIDGFMRE 340

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            + +EA  ++ EM+  GVQP+ +T++ ++  LCK G+MD AS LL+ M+     P+T T+
Sbjct: 341 GNADEAFKMIKEMVAAGVQPNKITYDNLVRGLCKMGQMDRASLLLKQMVRDSHRPDTITY 400

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +++G         A  L   ME+ G    V++Y
Sbjct: 401 NLIIEGHFRHHSKKDAFRLLSEMENAGISPNVYTY 435



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/306 (25%), Positives = 136/306 (44%), Gaps = 29/306 (9%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           S P +  ++ L   L KT   +    +   ++  G+ P++  YN LI+  CK G +S+  
Sbjct: 638 SVPDVHVYSSLISGLCKTADREKAFGILDEMSKKGVDPNIVCYNALIDGLCKSGDISYAR 697

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   IL     P+ V +TSLI G C    I  A  L+ ++ A G  P+   YS L  G 
Sbjct: 698 NVFNSILAKGLVPNCVTYTSLIDGSCKVGDISNAFYLYNEMLATGITPDAFVYSVLTTGC 757

Query: 223 CRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
              G    A+ L EEM   G+            ++  ++DG CK G + +  +L   +  
Sbjct: 758 SSAGDLEQAMFLIEEMFLRGHASIS--------SFNNLVDGFCKRGKMQETLKLLHVIMG 809

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------------------MMDQGVQPD 322
           + + P+ +T  ++I G   A   +E + + +E                   M++QG  P 
Sbjct: 810 RGLVPNALTIENIISGLSEAGKLSEVHTIFVELQQKTSESAARHFSSLFMDMINQGKIPL 869

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
            V  ++I D  CK G +D+A  L ++++ +      S++  ++D  C  G+++ A  L  
Sbjct: 870 DVVDDMIRDH-CKEGNLDKALMLRDVIVAKSAPMGCSSYLAIVDNLCRKGKLSEALNLLK 928

Query: 383 SMESMG 388
            M+  G
Sbjct: 929 EMDKRG 934



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 27/231 (11%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVA- 231
            P   AF  L   LCA S    A  L  K+ +A+   P V+  +++   L  +GH     
Sbjct: 119 APAPDAFAHLAMSLCAGSLFNLANGLLIKMIRAYPSPPVVL--ASIHRALSDSGHPFAGG 176

Query: 232 ----LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK--EGFVDKAKELFLQMKDKNIN 285
                   +E+  G G+ G         + +    L +  EG   + +            
Sbjct: 177 ARRPRGYLQEVWEGAGRRGGRPDDERSGHGSQHSVLQRAVEGSAARGR------------ 224

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
                + S +  +C   +++ A  +L+EM ++G   + VT+NV++  LC++G ++EA   
Sbjct: 225 -----HGSALEAYCKVREFDTAKKVLVEMRERGCGLNTVTYNVLIAGLCRSGAVEEAFGF 279

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + M   G+ P+  T+  L++G C + R N AK L   M     K  V  Y
Sbjct: 280 KKDMEDYGLVPDGFTYGALINGLCKSRRSNEAKALLDEMSCAELKPNVVVY 330


>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
          Length = 718

 Score =  167 bits (422), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L    A     +    L   ++ +G+ PD++ YN +I+C  K G++      
Sbjct: 183 PNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTY 242

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  I      PDAV F + I G     ++ EAA  F ++   G  PN   Y+ LING  +
Sbjct: 243 LLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFK 302

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+ + AL++F  +       GV+  P+  T +  I GL K G V +A ++F ++K+K +
Sbjct: 303 AGNLMEALSIFRHLH----ALGVL--PDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGL 356

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV TY+SLI GFC   +  +A  L  EM  +G+ P++  +N ++D LCK+G +  A +
Sbjct: 357 VPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARK 416

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  +G+ P++ T+ST++DG+C +  V  A  LF  M S G +   F Y
Sbjct: 417 LFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVY 468



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 90/284 (31%), Positives = 143/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +  CL+K    +   +    +   GL PD  T+   I  + K G+++     
Sbjct: 218 PDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKY 277

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+   +T LI G      +MEA ++F  L A G  P+V T S  I+GL +
Sbjct: 278 FDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLK 337

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL +F E+       G+V  P+  TY+++I G CK+G V+KA EL  +M  K I
Sbjct: 338 NGRVQEALKVFSELKEK----GLV--PDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGI 391

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++  YN+L+ G C + D   A  L   M ++G++PD VT++ ++D  CK+  + EA  
Sbjct: 392 APNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDSVTYSTMIDGYCKSENVAEAFS 451

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   M  +GV P++  ++ L+ G C  G +  A  LF  M   G
Sbjct: 452 LFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMNLFREMLQKG 495



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 164/380 (43%), Gaps = 81/380 (21%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF ++  +   P   T    + G L K       L +F  L   GL PD++TY+ L
Sbjct: 308 EALSIFRHLHALGVLPDVQTCSAFIHGLL-KNGRVQEALKVFSELKEKGLVPDVFTYSSL 366

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G V   F +   +      P+   + +L+ GLC    I  A  LF  +   G 
Sbjct: 367 ISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGL 426

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVCKPN------- 252
           +P+ +TYST+I+G C++ +   A +LF EM +          N      CK         
Sbjct: 427 EPDSVTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKAMN 486

Query: 253 ------------TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                       T+++ T+IDG CK   + +A +LF +M  K I PD VTY ++I   C 
Sbjct: 487 LFREMLQKGFATTLSFNTLIDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCK 546

Query: 301 ANDWNEANCLLIEMMD-----------------QGVQPDVVTFNVIM------------- 330
           A    EAN L  EM +                 +GV+PD VT+ +++             
Sbjct: 547 AGKMEEANLLFKEMQERNLIVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAF 606

Query: 331 ---DE-------------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
              DE                   LCK   + EAS+LL+ M   G+ P+ +  STL+  F
Sbjct: 607 KLRDEVVGKGMLTKGTIHDLLITALCKREDLTEASKLLDEMGELGLKPSLAACSTLVRSF 666

Query: 369 CLTGRVNHAKELFVSMESMG 388
              G+++ A  +F  ++S+G
Sbjct: 667 HEAGKMDEATRVFEGVKSLG 686



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 146/301 (48%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA   F+ M       P   + + L     +    D VL +   + S G+  +L TYN+
Sbjct: 27  NEAKLTFEEM-QKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNV 85

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G++     +L  ++     P++  F  LI+G C E  +  A  L  +++   
Sbjct: 86  LIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRN 145

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ ++Y  +INGLC      +A  L E+M           KPN V Y+T+I G   EG
Sbjct: 146 LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG------LKPNVVVYSTLIMGYASEG 199

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A+ L   M    + PD+  YN++I     A    EA+  L+E+  +G++PD VTF 
Sbjct: 200 RIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEASTYLLEIQGRGLKPDAVTFG 259

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
             +    K GKM EA++  + M+  G+ PN   ++ L++G    G +  A  +F  + ++
Sbjct: 260 AFILGYSKTGKMTEAAKYFDEMLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHAL 319

Query: 388 G 388
           G
Sbjct: 320 G 320



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++ ++   L + K  +     F+ +  TGL PD    + LI+ F + G +    + 
Sbjct: 8   PNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGDIDE-VLR 66

Query: 165 LGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++ SC  P + + +  LI GLC   ++ +AA +   +   GCKPN  T+  LI G C
Sbjct: 67  IKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILKGMITLGCKPNSRTFCLLIEGYC 126

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R  +   AL L +EM   N        P+ V+Y  +I+GLC    +  A +L  +M    
Sbjct: 127 REHNMGRALELLDEMEKRN------LVPSAVSYGAMINGLCHCKDLSLANKLLEKMTFSG 180

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+VV Y++LI G+       EA  LL  M   GV PD+  +N I+  L K GKM+EAS
Sbjct: 181 LKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAGKMEEAS 240

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             L  +  RG+ P+  TF   + G+  TG++  A + F  M   G
Sbjct: 241 TYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHG 285



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/264 (28%), Positives = 138/264 (52%), Gaps = 6/264 (2%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +   GL P+ YTY I+    C+  R++   +    + ++   PD  A ++LI G   E  
Sbjct: 1   MGEKGLVPNTYTYTIITAGLCRAKRMNEAKLTFEEMQKTGLKPDYNACSALIDGFMREGD 60

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           I E   +   + + G   N+ITY+ LI+GLC+ G    A  + +      G   + CKPN
Sbjct: 61  IDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFGKMEKAAEILK------GMITLGCKPN 114

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
           + T+  +I+G C+E  + +A EL  +M+ +N+ P  V+Y ++I+G C+  D + AN LL 
Sbjct: 115 SRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSYGAMINGLCHCKDLSLANKLLE 174

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           +M   G++P+VV ++ ++      G+++EA RLL+ M   GV P+   ++ ++      G
Sbjct: 175 KMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIFCYNAIISCLSKAG 234

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
           ++  A    + ++  G K    ++
Sbjct: 235 KMEEASTYLLEIQGRGLKPDAVTF 258



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 60/275 (21%), Positives = 110/275 (40%), Gaps = 52/275 (18%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF +F  M +    P       L+ GC  K    +  ++LF+ +   G F    ++N L
Sbjct: 448 EAFSLFHEMPSKGVQPHSFVYNALVHGC-CKEGDMEKAMNLFREMLQKG-FATTLSFNTL 505

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA----------- 197
           I+ +CK  ++     +   ++     PD V +T++I   C   ++ EA            
Sbjct: 506 IDGYCKSCKIQEASQLFQEMIAKQIMPDHVTYTTVIDWHCKAGKMEEANLLFKEMQERNL 565

Query: 198 ------ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN--------- 242
                 ALF K+ A G KP+ +TY  +I   C+  + + A  L +E+             
Sbjct: 566 IVDTVFALFEKMVAKGVKPDEVTYGLVIYAHCKEDNLVEAFKLRDEVVGKGMLTKGTIHD 625

Query: 243 ----------------------GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                                 G+ G+  KP+    +T++    + G +D+A  +F  +K
Sbjct: 626 LLITALCKREDLTEASKLLDEMGELGL--KPSLAACSTLVRSFHEAGKMDEATRVFEGVK 683

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
              + PD  T   L++G     D  +A  L+ +++
Sbjct: 684 SLGLVPDTTTLIDLVNGNLNDTDSEDARNLIKQLV 718


>gi|357142290|ref|XP_003572522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 669

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/293 (31%), Positives = 154/293 (52%), Gaps = 15/293 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +F++L  CL +    D  + + +++   G  PD+  YN LIN F + GRV    +
Sbjct: 344 PPNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALM 403

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +L     PD ++F + +K LC   R  +   L  ++    C    +T++ LI+ LC
Sbjct: 404 LLDSML---CNPDTISFNAALKALCRTERWYDVEELIAQMLREDCPLIEMTFNILIDSLC 460

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A+ +FE+M          C P+ VTY+++I+G  ++G V+ A ELF  M  K 
Sbjct: 461 QHGLVNHAIEVFEQMPKYR------CTPDIVTYSSLINGFSEQGLVESAIELFQSMPCK- 513

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD+ +YN+++ G C A  W +A  L+  M  +   P+ +TFN++++ LC+ G  D A 
Sbjct: 514 --PDIFSYNAVLKGLCRAARWEDAGELIANMARKDCPPNEITFNILINSLCQKGFADRAI 571

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + + M   G  P+  T++ L++GF   GR++ A  L   + +M CK    SY
Sbjct: 572 EVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNL---LSTMSCKPDAISY 621



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 145/327 (44%), Gaps = 44/327 (13%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N +   L   K ++    L + +      P+  T+   I  FC+ G + H 
Sbjct: 205 PVAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHA 264

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
             +L R+ R   TPD V +++L+ G   + R+ +A  L   L    CKPN + Y+  + G
Sbjct: 265 VQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVL---LNTMLCKPNTVCYNAALKG 321

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LC          L  EM   +      C PN  T++ +   LC+ G VD A E+  QM+ 
Sbjct: 322 LCMAERWKDVGELIAEMVRKD------CPPNEATFSMLTSCLCQHGLVDCAMEVVEQMQK 375

Query: 282 KNINPDVVTYNSLIHGF--------------------------------CYANDWNEANC 309
               PDVV YN+LI+ F                                C    W +   
Sbjct: 376 YGCRPDVVIYNTLINYFSEQGRVDDALMLLDSMLCNPDTISFNAALKALCRTERWYDVEE 435

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L+ +M+ +      +TFN+++D LC++G ++ A  + E M      P+  T+S+L++GF 
Sbjct: 436 LIAQMLREDCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFS 495

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G V  A ELF   +SM CK  +FSY
Sbjct: 496 EQGLVESAIELF---QSMPCKPDIFSY 519



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 88/285 (30%), Positives = 142/285 (49%), Gaps = 21/285 (7%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           S QG +     ++A  + D ML      P   SFN     L +T+ +  V  L  ++   
Sbjct: 393 SEQGRV-----DDALMLLDSML----CNPDTISFNAALKALCRTERWYDVEELIAQMLRE 443

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
                  T+NILI+  C+ G V+H   V  ++ +   TPD V ++SLI G   +  +  A
Sbjct: 444 DCPLIEMTFNILIDSLCQHGLVNHAIEVFEQMPKYRCTPDIVTYSSLINGFSEQGLVESA 503

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             LF   ++  CKP++ +Y+ ++ GLCR      A  L   MA  +      C PN +T+
Sbjct: 504 IELF---QSMPCKPDIFSYNAVLKGLCRAARWEDAGELIANMARKD------CPPNEITF 554

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I+ LC++GF D+A E+F QM +    PD+ TYN+LI+GF      ++A  LL  M  
Sbjct: 555 NILINSLCQKGFADRAIEVFKQMPEYGSTPDIFTYNALINGFSEQGRLDDALNLLSTM-- 612

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
              +PD +++N  +  LC+  +  EA  ++  M+ +   PN  TF
Sbjct: 613 -SCKPDAISYNSTLKGLCRAERWKEAEEIVAEMLRKKCPPNEVTF 656



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 75/244 (30%), Positives = 128/244 (52%), Gaps = 12/244 (4%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           ++ TY  LIN +C+ GR++    ++  +      PD   + +++KGLC   +  +A  L 
Sbjct: 177 NVVTYTALINGYCRSGRLADALNLIASMP---VAPDTYTYNTVLKGLCGAKQWEKAEELM 233

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++    C PN +T++T I   C+ G    A+ L E M     ++G  C P+ V Y+T++
Sbjct: 234 EEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMP----RYG--CTPDVVIYSTLV 287

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +G  ++G VD A  L   M  K   P+ V YN+ + G C A  W +   L+ EM+ +   
Sbjct: 288 NGFSEQGRVDDALVLLNTMLCK---PNTVCYNAALKGLCMAERWKDVGELIAEMVRKDCP 344

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+  TF+++   LC++G +D A  ++E M   G  P+   ++TL++ F   GRV+ A  L
Sbjct: 345 PNEATFSMLTSCLCQHGLVDCAMEVVEQMQKYGCRPDVVIYNTLINYFSEQGRVDDALML 404

Query: 381 FVSM 384
             SM
Sbjct: 405 LDSM 408



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 86/273 (31%), Positives = 131/273 (47%), Gaps = 15/273 (5%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L + +  D  L L   + S+   P +   NILI   C   R++    VL   L+   + D
Sbjct: 86  LVQLEDLDAALRLVGSMPSSEP-PAVIACNILIKKLCAHRRLADAERVLD-ALKESGSAD 143

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           AV+  +L+ G C + R+ +A  +    K  G   NV+TY+ LING CR+G    ALNL  
Sbjct: 144 AVSHNTLVAGYCRDGRLADAERVLEAAKVSGAA-NVVTYTALINGYCRSGRLADALNLIA 202

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            M            P+T TY T++ GLC     +KA+EL  +M   N +P+ VT+ + I 
Sbjct: 203 SMP---------VAPDTYTYNTVLKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIR 253

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            FC     + A  LL  M   G  PDVV ++ +++   + G++D+A  LL  M+ +   P
Sbjct: 254 SFCQNGLLDHAVQLLERMPRYGCTPDVVIYSTLVNGFSEQGRVDDALVLLNTMLCK---P 310

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           NT  ++  + G C+  R     EL   M    C
Sbjct: 311 NTVCYNAALKGLCMAERWKDVGELIAEMVRKDC 343



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 76/222 (34%), Positives = 110/222 (49%), Gaps = 14/222 (6%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P  +A   LIK LCA  R+ +A  +   LK  G   + ++++TL+ G CR G    A  +
Sbjct: 108 PAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLVAGYCRDGRLADAERV 166

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            E          V    N VTYT +I+G C+ G +  A  L   M    + PD  TYN++
Sbjct: 167 LEAAK-------VSGAANVVTYTALINGYCRSGRLADALNLIASMP---VAPDTYTYNTV 216

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           + G C A  W +A  L+ EM+     P+ VTF   +   C+NG +D A +LLE M   G 
Sbjct: 217 LKGLCGAKQWEKAEELMEEMIRNNCHPNEVTFATQIRSFCQNGLLDHAVQLLERMPRYGC 276

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            P+   +STL++GF   GRV+ A    V + +M CK     Y
Sbjct: 277 TPDVVIYSTLVNGFSEQGRVDDA---LVLLNTMLCKPNTVCY 315



 Score = 40.0 bits (92), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A   L+  M     P V+  N+++ +LC + ++ +A R+L+ +   G + +  + +TL+
Sbjct: 93  DAALRLVGSMPSSEPPAVIACNILIKKLCAHRRLADAERVLDALKESG-SADAVSHNTLV 151

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTV 393
            G+C  GR+  A+ +  + +  G  + V
Sbjct: 152 AGYCRDGRLADAERVLEAAKVSGAANVV 179


>gi|358346502|ref|XP_003637306.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
 gi|355503241|gb|AES84444.1| Pentatricopeptide repeat-containing protein, partial [Medicago
           truncatula]
          Length = 603

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 90/269 (33%), Positives = 144/269 (53%), Gaps = 7/269 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF+ +   G+ PD  +Y +++  +CK+G +      L  +L   F  D   FT +I    
Sbjct: 192 LFEEMCVRGVQPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFS 251

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            +     A   F +L   G +PN+I ++ +I GLC+ G    A  + EEM  G G     
Sbjct: 252 GKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMV-GKG----- 305

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEA 307
            KPN  T+T++IDGLCK+G+ +KA  LFL++ + +N  P+V+TY ++I G+C  +  N A
Sbjct: 306 WKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRA 365

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             LL  M +QG+ P+  T+  ++D  CK G  + A  L+ LM   G +PN  T++ +++G
Sbjct: 366 EMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNG 425

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GRV  A ++       G K   F+Y
Sbjct: 426 LCKRGRVQEAYKMLEDGFQNGLKPDKFTY 454



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/282 (31%), Positives = 148/282 (52%), Gaps = 7/282 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +F L+    +   +    L  F+RL   GL P+L  +  +I   CK G +   F +L  
Sbjct: 241 ATFTLIISRFSGKGYTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEE 300

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTG 226
           ++   + P+    TSLI GLC +    +A  LF KL ++   KPNV+TY+ +I+G CR  
Sbjct: 301 MVGKGWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCRED 360

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                LN  E + +   + G+V  PNT TYTT+IDG CK G  ++A +L   M  +  +P
Sbjct: 361 ----KLNRAEMLLSRMKEQGLV--PNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSP 414

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           ++ TYN++++G C      EA  +L +    G++PD  T+N++M E CK   + +A  L 
Sbjct: 415 NLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALF 474

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G+ P+  +++TL+  FC   R+  ++  F     +G
Sbjct: 475 NKMLKIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIG 516



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 13/321 (4%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           SG+G  T      A   F  +++M    P L +F  +   L K         + + +   
Sbjct: 251 SGKGYTT-----RALWYFRRLVDM-GLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGK 304

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIME 195
           G  P++YT+  LI+  CK G     F +  +++RS    P+ + +T++I G C E ++  
Sbjct: 305 GWKPNVYTHTSLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNR 364

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  L +++K  G  PN  TY+TLI+G C+ G+   A +L   M++          PN  T
Sbjct: 365 AEMLLSRMKEQGLVPNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEG------FSPNLCT 418

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  I++GLCK G V +A ++        + PD  TYN L+   C   +  +A  L  +M+
Sbjct: 419 YNAIVNGLCKRGRVQEAYKMLEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKML 478

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G+QPD+ ++  ++   C+  +M E+    E  +  G+ P   T+++++ G+C  G + 
Sbjct: 479 KIGIQPDIHSYTTLIAVFCRENRMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLT 538

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A + F  +   GC     +Y
Sbjct: 539 LAMKFFHRLSDHGCAPDSITY 559



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 131/282 (46%), Gaps = 6/282 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF +F  ++      P + ++  +     +    +    L  R+   GL P+  TY  
Sbjct: 327 EKAFRLFLKLVRSENHKPNVLTYTAMISGYCREDKLNRAEMLLSRMKEQGLVPNTNTYTT 386

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G     + ++  +    F+P+   + +++ GLC   R+ EA  +       G
Sbjct: 387 LIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKMLEDGFQNG 446

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+  TY+ L++  C+  +   AL LF +M     K G+  +P+  +YTT+I   C+E 
Sbjct: 447 LKPDKFTYNILMSEHCKQENIRQALALFNKML----KIGI--QPDIHSYTTLIAVFCREN 500

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + +++  F +     I P   TY S+I G+C   +   A      + D G  PD +T+ 
Sbjct: 501 RMKESEMFFEEAVRIGIIPTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGCAPDSITYG 560

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            I+  LCK  K DEA  L + MI +G+ P   T  TL   +C
Sbjct: 561 AIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYC 602



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 6/231 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L     K  +++    L   ++S G  P+L TYN ++N  CK GRV   + +
Sbjct: 379 PNTNTYTTLIDGHCKAGNFERAYDLMNLMSSEGFSPNLCTYNAIVNGLCKRGRVQEAYKM 438

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L    ++   PD   +  L+   C +  I +A ALF K+   G +P++ +Y+TLI   CR
Sbjct: 439 LEDGFQNGLKPDKFTYNILMSEHCKQENIRQALALFNKMLKIGIQPDIHSYTTLIAVFCR 498

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 +   FEE      + G++  P   TYT++I G C+EG +  A + F ++ D   
Sbjct: 499 ENRMKESEMFFEEAV----RIGII--PTNKTYTSMICGYCREGNLTLAMKFFHRLSDHGC 552

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
            PD +TY ++I G C  +  +EA  L   M+++G+ P  VT   +  E CK
Sbjct: 553 APDSITYGAIISGLCKQSKRDEARSLYDSMIEKGLVPCEVTRITLAYEYCK 603



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 101/215 (46%), Gaps = 7/215 (3%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +++      R+ EA  +  ++   G  PN  T + +I      G    A  LFEEM    
Sbjct: 141 MVESFSEVGRLKEAVEMVIEMHNQGLVPNTRTLNWIIKVTSEMGLVEYAELLFEEMCVR- 199

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              GV  +P++++Y  ++   CK G + +A +    M ++    D  T+  +I  F    
Sbjct: 200 ---GV--QPDSISYRVMVVMYCKIGNILEADKWLSVMLERGFVVDNATFTLIISRFSGKG 254

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
               A      ++D G++P+++ F  +++ LCK G + +A  +LE M+ +G  PN  T +
Sbjct: 255 YTTRALWYFRRLVDMGLEPNLINFTCMIEGLCKRGSIKQAFEMLEEMVGKGWKPNVYTHT 314

Query: 363 TLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
           +L+DG C  G    A  LF+ +  S   K  V +Y
Sbjct: 315 SLIDGLCKKGWTEKAFRLFLKLVRSENHKPNVLTY 349


>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
          Length = 895

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++       K + +D    +F+ +       +  TYN++I+  C+ G V   F  
Sbjct: 241 PDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFGF 300

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    +PDA  + +L+ GLC  SR+ EA AL  ++   G KPN++ Y TL++G  +
Sbjct: 301 KEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMK 360

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T  A ++ +EM +         +PN + Y  +I GLCK G + +A +L  +M    +
Sbjct: 361 EGKTAEAFDILKEMISAG------VQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGL 414

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TYN L+ G    +D + A  LL EM + G+ P+V ++ ++++ LC+NG+  EA  
Sbjct: 415 RPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGN 474

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LLE MI  G+ PN   ++ L+ G    G ++ A E    M        +F Y
Sbjct: 475 LLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCY 526



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 8/290 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           MLN    P   T  +LL G   K+  Y+ V S+ + +  +G  PD + Y I+I    +  
Sbjct: 584 MLNSGLKPNADTYTDLLEGYF-KSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSE 642

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +   F+VL  + ++   PD   ++SLI GLC  + + +A  L  ++   G +P ++ Y+
Sbjct: 643 NMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVCYN 702

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+G CR+G    A N+F+ +       G+V  PN VTYT +IDG CK G +  A +L+
Sbjct: 703 ALIDGFCRSGDISRARNVFDSILAK----GLV--PNCVTYTALIDGNCKNGDITDAFDLY 756

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M D+ I PD   YN L  G   A D  +A  L  EM ++G   +V  FN ++   CK 
Sbjct: 757 KEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHGFCKR 815

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           GK+ E  +LL +M+ R + PN  T   ++  F   G++  A  +F  ++ 
Sbjct: 816 GKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRVFAELQQ 865



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 151/338 (44%), Gaps = 42/338 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF   + M++   SP   T +  L   L K        +L   ++ +GL P++  Y  
Sbjct: 295 EEAFGFKEEMVDYGLSPDAFT-YGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGT 353

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ F K G+ +  F +L  ++ +   P+ + + +LI+GLC   ++  A+ L  ++   G
Sbjct: 354 LVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVG 413

Query: 208 CKP-----------------------------------NVITYSTLINGLCRTGHTIVAL 232
            +P                                   NV +Y  +INGLC+ G +  A 
Sbjct: 414 LRPDTFTYNPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAG 473

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           NL EEM +         KPN   Y  +I G  KEG +  A E   +M   N++PD+  YN
Sbjct: 474 NLLEEMISEG------LKPNAFMYAPLIIGHSKEGNISLACEALEKMTKANVHPDLFCYN 527

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI G        EA     ++  +G+ PD  T++ ++   CK G +++A +LL  M+  
Sbjct: 528 SLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQLLRQMLNS 587

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           G+ PN  T++ L++G+  +        +  SM   G K
Sbjct: 588 GLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDK 625



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/286 (29%), Positives = 128/286 (44%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L +    + +  L   +   G+ PD+YTY+  I   CK         V   + R
Sbjct: 212 NGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRR 271

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                + V +  +I GLC    + EA     ++  +G  P+  TY  L+NGLC+      
Sbjct: 272 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKE 331

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  L +EM+          KPN V Y T++DG  KEG   +A ++  +M    + P+ + 
Sbjct: 332 AKALLDEMSCSG------LKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIM 385

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y++LI G C       A+ LL EM+  G++PD  T+N +M    +    D A  LL  M 
Sbjct: 386 YDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEMR 445

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+ PN  ++  +++G C  G    A  L   M S G K   F Y
Sbjct: 446 NSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 491



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 153/340 (45%), Gaps = 43/340 (12%)

Query: 94  FDYMLNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           F+ +  MR S   P + S+ ++   L +        +L + + S GL P+ + Y  LI  
Sbjct: 438 FELLNEMRNSGILPNVYSYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIG 497

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
             K G +S     L ++ ++   PD   + SLIKGL    R+ EA   + +++  G  P+
Sbjct: 498 HSKEGNISLACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPD 557

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
             TYS LI+G C+TG+   A  L  +M N         KPN  TYT +++G  K    +K
Sbjct: 558 EFTYSGLIHGYCKTGNLEKADQLLRQMLNSG------LKPNADTYTDLLEGYFKSNDYEK 611

Query: 272 AKELFLQM---KDKNIN--------------------------------PDVVTYNSLIH 296
              +   M    DK  N                                PD+  Y+SLI 
Sbjct: 612 VSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLIS 671

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A  LL EM  +G++P +V +N ++D  C++G +  A  + + ++ +G+ P
Sbjct: 672 GLCKIADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVP 731

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  T++ L+DG C  G +  A +L+  M   G     F Y
Sbjct: 732 NCVTYTALIDGNCKNGDITDAFDLYKEMLDRGIAPDAFVY 771



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/315 (28%), Positives = 148/315 (46%), Gaps = 42/315 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L+     +     + ++   GL PD +TY+ LI+ +CK G +     +
Sbjct: 521 PDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEKADQL 580

Query: 165 LGRILRSCFTPDAVAFTSLIKGL----------------------------------CAE 190
           L ++L S   P+A  +T L++G                                    + 
Sbjct: 581 LRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 640

Query: 191 SRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           S  ME A  + T+++  G  P++  YS+LI+GLC+      A+ L +EMA    + G+VC
Sbjct: 641 SENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEMAKEGLEPGIVC 700

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
                 Y  +IDG C+ G + +A+ +F  +  K + P+ VTY +LI G C   D  +A  
Sbjct: 701 ------YNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAFD 754

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  EM+D+G+ PD   +NV+         +++A  L E M  RG   N S F+TL+ GFC
Sbjct: 755 LYKEMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGY-ANVSLFNTLVHGFC 813

Query: 370 LTGRVNHAKELFVSM 384
             G++   ++L   M
Sbjct: 814 KRGKLQETEKLLHVM 828



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/261 (31%), Positives = 125/261 (47%), Gaps = 14/261 (5%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P     ++L++ + K G V +   V+  +      P       L+K L       +A  L
Sbjct: 171 PSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLAPTRRCCNGLLKDLLR----ADAMEL 226

Query: 200 FTKLKAF----GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
             KLK F    G  P+V TYST I   C+      A  +FEEM   +      C  N VT
Sbjct: 227 LWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKVFEEMRRRD------CAMNEVT 280

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  +I GLC+ G V++A     +M D  ++PD  TY +L++G C  +   EA  LL EM 
Sbjct: 281 YNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMS 340

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G++P++V +  ++D   K GK  EA  +L+ MI  GV PN   +  L+ G C  G++ 
Sbjct: 341 CSGLKPNIVVYGTLVDGFMKEGKTAEAFDILKEMISAGVQPNKIMYDNLIRGLCKIGQLG 400

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A +L   M  +G +   F+Y
Sbjct: 401 RASKLLKEMIKVGLRPDTFTY 421


>gi|449451896|ref|XP_004143696.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 1032

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N   G L +T   D  L + K +   GL PD +TY +L++ FCK  R     ++
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S   P+   +T+LI G   E  I EA  +  ++   G K NV+TY+ +I G+ +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A++LF EM           +P+T TY  +IDG  K   + KA EL  +MK + +
Sbjct: 394 AGEMAKAMSLFNEMLMAG------LEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P   TY+ LI G C+++D  +AN +L +M+  GV+P+V  +  ++    +  + + A  
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL++MI  GV P+   ++ L+ G C   +V  AK L V M   G K    +Y
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 159/308 (51%), Gaps = 8/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   F  ML  +   P + +++ +   L+K       + +F +   TG+ PD++ YN L
Sbjct: 609 EALSTFKCMLE-KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSL 667

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G +     +   +L +   P+ V + +LI GLC    + +A  LF +++    
Sbjct: 668 ISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDL 727

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TYST+I+G C++G+   A  LF+EM +          P+   Y  +IDG  KEG 
Sbjct: 728 VPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKG------ISPDGYIYCILIDGCGKEGN 781

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           ++KA  LF + + K++   +  +NSLI  FC      EA  L  +M+D+ + P++VT+ +
Sbjct: 782 LEKALSLFHEAQQKSVGS-LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTI 840

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D   K   M+EA +L   M  R + PNT T+++L+  +   G       LF  ME+ G
Sbjct: 841 LIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARG 900

Query: 389 CKHTVFSY 396
                 +Y
Sbjct: 901 IACDAIAY 908



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 146/277 (52%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L + K  +    L   +   G+ P+ +TY   IN + K G +      
Sbjct: 519 PDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERY 578

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L S   P+ V +T LIKG C     +EA + F  +   G  P++  YS +I+ L +
Sbjct: 579 FKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSK 638

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T  A+ +F +      K GVV  P+   Y ++I G CKEG ++KA +L+ +M    I
Sbjct: 639 NGKTKEAMGVFLKFL----KTGVV--PDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGI 692

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NP++V YN+LI+G C   +  +A  L  E+ ++ + PDVVT++ I+D  CK+G + EA +
Sbjct: 693 NPNIVVYNTLINGLCKLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFK 752

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           L + MI +G++P+   +  L+DG    G +  A  LF
Sbjct: 753 LFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLF 789



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +  L     +   Y+  + L K + + G+ PDL+ YN LI   C+  +V    ++
Sbjct: 484 PNVFMYGTLIKAYVQESRYEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKML 543

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+A  + + I        I  A   F  + + G  PN + Y+ LI G C 
Sbjct: 544 LVDMGEKGIKPNAHTYGAFINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCD 603

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+T+ AL+ F+ M       G++  P+   Y+ II  L K G   +A  +FL+     +
Sbjct: 604 VGNTVEALSTFKCMLEK----GLI--PDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGV 657

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV  YNSLI GFC   D  +A+ L  EM+  G+ P++V +N +++ LCK G++ +A  
Sbjct: 658 VPDVFLYNSLISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINGLCKLGEVTKARE 717

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + +  + + P+  T+ST++DG+C +G +  A +LF  M S G     + Y
Sbjct: 718 LFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGYIY 769



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L   N L   L K         ++  +    + PD+YTY  +I   CK+G V  G +V
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + + C  P+   + + I GLC    + EA  +   +   G  P+  TY+ L++G C+
Sbjct: 265 LSEMEKEC-KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A  +FE M +          PN  TYT +IDG  KEG +++A  +  +M  + +
Sbjct: 324 QKRSKEAKLIFESMPSSG------LNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +VVTYN++I G   A +  +A  L  EM+  G++PD  T+N+++D   K+  M +A  
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACE 437

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M  R + P+  T+S L+ G C +  +  A E+   M   G K  VF Y
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMY 489



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 9/291 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           LT F++           +   S+F    S G FP L   N L+    K   +   + V G
Sbjct: 172 LTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYG 231

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++ +   PD   +T++IK  C    +++   + ++++   CKPN+ TY+  I GLC+TG
Sbjct: 232 SMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTG 290

Query: 227 HTIVALNLFE-EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
               AL + +  M  G G       P+  TYT ++DG CK+    +AK +F  M    +N
Sbjct: 291 AVDEALEVKKLMMEKGLG-------PDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN 343

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+  TY +LI GF    +  EA  +  EM+ +G++ +VVT+N ++  + K G+M +A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M++ G+ P+T T++ L+DG+  +  +  A EL   M++     + F+Y
Sbjct: 404 FNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 172/388 (44%), Gaps = 24/388 (6%)

Query: 3   FVSSTCSFHFTSISISALRCNFSSSF-PHTRKPKS---SISKNEPSDPTTTAKLKESLRL 58
            +   C    T  ++S  +C       P  R   +   S+SKN  +       LK     
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 59  TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
            V D       +   CK   +GDI      +A  ++D ML+     P +  +N L   L 
Sbjct: 657 VVPDVFLYNSLISGFCK---EGDI-----EKASQLYDEMLH-NGINPNIVVYNTLINGLC 707

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K         LF  +    L PD+ TY+ +I+ +CK G ++  F +   ++    +PD  
Sbjct: 708 KLGEVTKARELFDEIEEKDLVPDVVTYSTIIDGYCKSGNLTEAFKLFDEMISKGISPDGY 767

Query: 179 AFTSLIKGLCAESRIMEAAALF--TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            +  LI G   E  + +A +LF   + K+ G   ++  +++LI+  C+ G  I A  LF+
Sbjct: 768 IYCILIDGCGKEGNLEKALSLFHEAQQKSVG---SLSAFNSLIDSFCKHGKVIEARELFD 824

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M +          PN VTYT +ID   K   +++A++LFL M+ +NI P+ +TY SL+ 
Sbjct: 825 DMVDKK------LTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLL 878

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            +    +  +   L  +M  +G+  D + + V+    CK GK  EA +LL   ++ G+  
Sbjct: 879 SYNQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKL 938

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSM 384
               F  L+   C   +++   EL   M
Sbjct: 939 EDDVFDALIFHLCKEKQISTVLELLSEM 966



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 142/308 (46%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  IF+ M +   +P   T   L+ G + K  + +  L +   + + GL  ++ TYN +
Sbjct: 329 EAKLIFESMPSSGLNPNRFTYTALIDGFI-KEGNIEEALRIKDEMITRGLKLNVVTYNAM 387

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I    K G ++    +   +L +   PD   +  LI G      + +A  L  ++KA   
Sbjct: 388 IGGIAKAGEMAKAMSLFNEMLMAGLEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+  TYS LI+GLC +     A  + ++M   NG      KPN   Y T+I    +E  
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIR-NG-----VKPNVFMYGTLIKAYVQESR 501

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A EL   M    + PD+  YN LI G C A    EA  LL++M ++G++P+  T+  
Sbjct: 502 YEMAIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGA 561

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++   K+G++  A R  + M+  G+ PN   ++ L+ G C  G    A   F  M   G
Sbjct: 562 FINLYSKSGEIQVAERYFKDMLSSGIVPNNVIYTILIKGHCDVGNTVEALSTFKCMLEKG 621

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 622 LIPDIRAY 629



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 7/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           +L  ++I I+ F  +G ++    V    +   F P  +   +L++ L   + +     ++
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +      P+V TY+ +I   C+ G  I    +  EM          CKPN  TY   I
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-------CKPNLFTYNAFI 283

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC+ G VD+A E+   M +K + PD  TY  L+ GFC      EA  +   M   G+ 
Sbjct: 284 GGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN 343

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+  T+  ++D   K G ++EA R+ + MI RG+  N  T++ ++ G    G +  A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 381 FVSMESMGCKHTVFSY 396
           F  M   G +   ++Y
Sbjct: 404 FNEMLMAGLEPDTWTY 419


>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 925

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L +    D+ L +F  +   G  P+  +YN LI  +C +G       +
Sbjct: 398 PNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSM 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +L+   TP  V +  +IKG C       A  +   +KA GC+P+  +Y+ LI+G C+
Sbjct: 458 LTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGFCK 517

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                +A  +F EM +       +C PN VTYT +I G CK+  +D A  +  +MK    
Sbjct: 518 ISKMELASGMFNEMMDRG-----LC-PNEVTYTALISGYCKDEKLDCAARMLERMKRSGC 571

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TYN LIHG    N+++ A  L   M+++ + PDVVT++ +++ LC NG +  A  
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALE 631

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   M+  G  PN  T+S+L+      GRV  A+E+F  ++  G
Sbjct: 632 MFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQG 675



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 97/288 (33%), Positives = 146/288 (50%), Gaps = 9/288 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M + R     L ++  L   L K     TV+  + ++   GL P+L  YN +IN  CK G
Sbjct: 183 MFSQRGPKMGLFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQPNLLIYNSVINALCKDG 242

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            V     ++ ++ +S   PD   +TS+I G C    +  A  +F ++   GC+PN  TYS
Sbjct: 243 NVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYS 302

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLINGLC +G    AL+   EM     + GV+  P   T+T  I  LC  G ++ A ++F
Sbjct: 303 TLINGLCNSGRVNEALDFISEMT----RHGVL--PTVHTFTAPIVALCDMGRIEDAWKIF 356

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           + MK K   P+V TY SLI G   +     A  L   M   GV P+ VT+N +M+ L +N
Sbjct: 357 IDMKKKGCKPNVYTYTSLISGQRVS---RMAIGLFHRMSRDGVVPNTVTYNALMNVLMEN 413

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            ++D A  +  +M   G  PNTS+++ L+ G+C  G    A  +  +M
Sbjct: 414 MEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGDTEKAMSMLTNM 461



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 81/272 (29%), Positives = 141/272 (51%), Gaps = 8/272 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            + LF R++  G+ P+  TYN L+N   +   +    +V   + +    P+  ++  LI+
Sbjct: 384 AIGLFHRMSRDGVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIR 443

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGK 244
           G C      +A ++ T +      P ++TY+ +I G C +G T VA+ + E M ANG   
Sbjct: 444 GYCTIGDTEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANG--- 500

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
               C+P+  +YT +I G CK   ++ A  +F +M D+ + P+ VTY +LI G+C     
Sbjct: 501 ----CQPDEWSYTELISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKL 556

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           + A  +L  M   G +P+V T+NV++  L K      A  L ++M+   ++P+  T+ST+
Sbjct: 557 DCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTV 616

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++G C  G +  A E+F  M   GC   + +Y
Sbjct: 617 INGLCNNGAIPLALEMFNKMVKHGCLPNLHTY 648



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 143/281 (50%), Gaps = 9/281 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +   ML  RP+P  L ++N++      +   D  + + + + + G  PD ++Y  L
Sbjct: 453 KAMSMLTNMLKGRPTPT-LVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTEL 511

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK+ ++     +   ++     P+ V +T+LI G C + ++  AA +  ++K  GC
Sbjct: 512 ISGFCKISKMELASGMFNEMMDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGC 571

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +PNV TY+ LI+GL +  +   A  L + M            P+ VTY+T+I+GLC  G 
Sbjct: 572 RPNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEK------ISPDVVTYSTVINGLCNNGA 625

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  A E+F +M      P++ TY+SLI          EA  +  E+  QG+ PD VT+ V
Sbjct: 626 IPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTY-V 684

Query: 329 IMDELC-KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            M E+C  +GK+D A   L  MI  G  P   T+  L+ G 
Sbjct: 685 KMIEVCVMSGKVDRAFDFLGEMINAGCQPTLQTYDVLIKGL 725



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/235 (27%), Positives = 118/235 (50%), Gaps = 8/235 (3%)

Query: 164 VLGRILRSCFTPDAV--AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           V  R+L S   P AV  A   +IK    ++ + +A          G K  + TY+TL+  
Sbjct: 143 VAMRLLESRDRPAAVGRARIHMIKSCSNKAEMTQALNYLDMFSQRGPKMGLFTYTTLLIQ 202

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L +   T   ++ + ++           +PN + Y ++I+ LCK+G V  A+ +  ++  
Sbjct: 203 LNKLNMTSTVMDRYHQILREG------LQPNLLIYNSVINALCKDGNVRDAESIINKVFK 256

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD  TY S+I G+C   D + A  +   M ++G +P+  T++ +++ LC +G+++E
Sbjct: 257 SGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDEEGCEPNAATYSTLINGLCNSGRVNE 316

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A   +  M   GV P   TF+  +   C  GR+  A ++F+ M+  GCK  V++Y
Sbjct: 317 ALDFISEMTRHGVLPTVHTFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTY 371



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 129/304 (42%), Gaps = 28/304 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L   L K  ++     L K +    + PD+ TY+ +IN  C  G +     +
Sbjct: 573 PNVQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLALEM 632

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++++    P+   ++SLI+ L  E R+ EA  +F++LK  G  P+ +TY  +I     
Sbjct: 633 FNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVM 692

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL-----FLQM 279
           +G    A +   EM N        C+P   TY  +I GL  E    K   L         
Sbjct: 693 SGKVDRAFDFLGEMINAG------CQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTF 746

Query: 280 KDKNINPDVVT-----------------YNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            D+ IN DV++                 Y++L+     +  W EAN L   M+ Q   P+
Sbjct: 747 DDQIINKDVISVLSSKLAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQCPN 806

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
             T+   +  L +  K+D A  + + M  +    + + +  L+   C   R   A+ +F 
Sbjct: 807 QDTYKHFLISLLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFE 866

Query: 383 SMES 386
            M S
Sbjct: 867 KMLS 870



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 66/282 (23%), Positives = 110/282 (39%), Gaps = 28/282 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L +    +    +F  L   GL PD  TY  +I      G+V   F  
Sbjct: 643 PNLHTYSSLIQALGQEGRVEEAEEMFSELKKQGLIPDEVTYVKMIEVCVMSGKVDRAFDF 702

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL----------------------FTK 202
           LG ++ +   P    +  LIKGL  E    +  AL                       +K
Sbjct: 703 LGEMINAGCQPTLQTYDVLIKGLQNEMVYHKLVALPNAASTSTFDDQIINKDVISVLSSK 762

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           L     + +   Y  L++ L R+G    A NL+  M + +      C PN  TY   +  
Sbjct: 763 LAELDFELSRQLYDALLSRLSRSGRWFEANNLYRSMVSQSQ-----C-PNQDTYKHFLIS 816

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L +   VD A ++F  M D+     +  Y  LI   C  +   EA  +  +M+ + +  D
Sbjct: 817 LLRALKVDLAMDVFKHMSDQRCELHLTGYKELICTLCQLHRRKEARFVFEKMLSRALNAD 876

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            + + ++++ L   G  D     L +M     NP++   + L
Sbjct: 877 EIVWTILINGLLGAGYKDLCMEFLHIMETNRRNPSSHARTIL 918


>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 729

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 163/309 (52%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +   +F+ M+  R   P + + N +   L         L +++ +   G+ P + TYN +
Sbjct: 185 QCLLVFEKMMRNR-FLPDVKNCNRILKILRDKNLLVKALEVYRMMGEYGIRPTVTTYNTM 243

Query: 149 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++ FCK G V     ++ ++  R C+ P  V F  LI GL  +  + +A  L  ++   G
Sbjct: 244 LHSFCKGGEVQRALDLVPKMQERGCY-PSEVTFNVLINGLSKKGELQQAKGLIQEMAKAG 302

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + +  TY+ LI G C+ G  + AL L+EEM            P   ++ TI+ G CKEG
Sbjct: 303 LRVSPYTYNPLICGYCKKGLLVEALALWEEMVTRG------VSPTVASHNTIMYGFCKEG 356

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A++    M  KN+ PD+++YN+LI+GFC   +  EA  LL E+  + +  ++VT+N
Sbjct: 357 KMSDARQQLSDMLKKNLMPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYN 416

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LC+ G ++ A +L E MI RG++P+  T++ L++G C  G +  AKE F  M  +
Sbjct: 417 TLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHV 476

Query: 388 GCKHTVFSY 396
           G     F+Y
Sbjct: 477 GLAPDQFAY 485



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/270 (34%), Positives = 146/270 (54%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L+L++ + + G+ P + ++N ++  FCK G++S     L  +L+    PD +++ +LI G
Sbjct: 327 LALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKNLMPDIISYNTLIYG 386

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    I EA  L  +L+      N++TY+TLI+GLCR G    AL L E+M N      
Sbjct: 387 FCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRG---- 442

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+ VTYT +++G CK G +  AKE F +M    + PD   Y + I G     D  +
Sbjct: 443 --IHPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAK 500

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM+ +G  PDV+T+NV ++ LCK G ++EA  LL+ MI  G  P+  T+++ M 
Sbjct: 501 AFKLQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMH 560

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                G +   +E+F  M S G   TV +Y
Sbjct: 561 AHMENGHLREGREIFYDMLSRGQTPTVVTY 590



 Score =  153 bits (386), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/337 (27%), Positives = 158/337 (46%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M+    SP   +   +++G   + K  D    L   L    L PD+ +YN L
Sbjct: 325 EALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDMLKKN-LMPDIISYNTL 383

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FC++G +   F++L  +     + + V + +LI GLC    +  A  L   +   G 
Sbjct: 384 IYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGI 443

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCK--- 250
            P+V+TY+ L+NG C+ G+ ++A   F+EM +               G  K G   K   
Sbjct: 444 HPDVVTYTVLVNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFK 503

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P+ +TY   ++GLCK G +++A EL  +M      PD VTY S +H   
Sbjct: 504 LQEEMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHM 563

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 E   +  +M+ +G  P VVT+ V++     NG++D A      M  +GV PN  
Sbjct: 564 ENGHLREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVI 623

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ L++GFC   +++ A + F+ M+  G     ++Y
Sbjct: 624 TYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTY 660



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 148/296 (50%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + D  L  R     + ++N L   L +    +T L L + + + G+ PD+ TY +L
Sbjct: 395 EAFILLD-ELRFRNLSFNIVTYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVL 453

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N  CK+G +         +L     PD  A+T+ I G        +A  L  ++   G 
Sbjct: 454 VNGACKLGNMLMAKEFFDEMLHVGLAPDQFAYTARIVGELKLGDTAKAFKLQEEMLTKGF 513

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+VITY+  +NGLC+ G+   A  L ++M   +G       P+ VTYT+ +    + G 
Sbjct: 514 PPDVITYNVFVNGLCKLGNLEEAGELLQKMIR-DGHV-----PDHVTYTSFMHAHMENGH 567

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + + +E+F  M  +   P VVTY  LIH        + A    +EM ++GV P+V+T+NV
Sbjct: 568 LREGREIFYDMLSRGQTPTVVTYTVLIHAHALNGRLDWAMAYFLEMQEKGVVPNVITYNV 627

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +++  CK  KMD+A +    M  +G+ PN  T++ L++  C  G+   A  L+  M
Sbjct: 628 LINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQM 683



 Score =  127 bits (319), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD ML++  +P        + G L K         L + + + G  PD+ TYN+ +N  C
Sbjct: 470 FDEMLHVGLAPDQFAYTARIVGEL-KLGDTAKAFKLQEEMLTKGFPPDVITYNVFVNGLC 528

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K+G +     +L +++R    PD V +TS +        + E   +F  + + G  P V+
Sbjct: 529 KLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENGHLREGREIFYDMLSRGQTPTVV 588

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY+ LI+     G    A+  F EM       GVV  PN +TY  +I+G CK   +D+A 
Sbjct: 589 TYTVLIHAHALNGRLDWAMAYFLEMQEK----GVV--PNVITYNVLINGFCKVRKMDQAC 642

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           + F++M++K I P+  TY  LI+  C    W EA  L  +M+ + ++PD  T   ++ +L
Sbjct: 643 KFFIEMQEKGIFPNKYTYTILINENCNMGKWQEALRLYAQMLGKRIRPDSCTHGALLKKL 702

Query: 334 CKNGKMDEASRLLELMILRG---VNPNT 358
            K+ K+ +A + +E +IL G   ++ NT
Sbjct: 703 DKDYKV-QAVQFIESLILDGDRTIDANT 729


>gi|449507709|ref|XP_004163108.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Cucumis sativus]
          Length = 999

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/292 (32%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N   G L +T   D  L + K +   GL PD +TY +L++ FCK  R     ++
Sbjct: 274 PNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLI 333

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S   P+   +T+LI G   E  I EA  +  ++   G K NV+TY+ +I G+ +
Sbjct: 334 FESMPSSGLNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAK 393

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A++LF EM           +P+T TY  +IDG  K   + KA EL  +MK + +
Sbjct: 394 AGEMAKAMSLFNEMLMAG------IEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKL 447

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P   TY+ LI G C+++D  +AN +L +M+  GV+P+V  +  ++    +  + + A  
Sbjct: 448 TPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEMAIE 507

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL++MI  GV P+   ++ L+ G C   +V  AK L V M   G K    +Y
Sbjct: 508 LLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTY 559



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 141/272 (51%), Gaps = 9/272 (3%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           LS FK +   GL PD+  Y+ +I+   K G+      V  + L++   PD   + SLI G
Sbjct: 611 LSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISG 670

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN--GLCRTGHTIVALNLFEEMANGNGK 244
            C E  I +A+ L+ ++   G  PN++ Y+TLIN  G C++G+   A  LF+EM +    
Sbjct: 671 FCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKG-- 728

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 P+   Y  +IDG  KEG ++KA  LF + + K++   +  +NSLI  FC     
Sbjct: 729 ----ISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGS-LSAFNSLIDSFCKHGKV 783

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  L  +M+D+ + P++VT+ +++D   K   M+EA +L   M  R + PNT T+++L
Sbjct: 784 IEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSL 843

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  +   G       LF  ME+ G      +Y
Sbjct: 844 LLSYNQIGNRFKMISLFKDMEARGIACDAIAY 875



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L   N L   L K         ++  +    + PD+YTY  +I   CK+G V  G +V
Sbjct: 205 PTLICCNNLMRDLLKANMMGLFWKVYGSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMV 264

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + + C  P+   + + I GLC    + EA  +   +   G  P+  TY+ L++G C+
Sbjct: 265 LSEMEKEC-KPNLFTYNAFIGGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A  +FE M +          PN  TYT +IDG  KEG +++A  +  +M  + +
Sbjct: 324 QKRSKEAKLIFESMPSSG------LNPNRFTYTALIDGFIKEGNIEEALRIKDEMITRGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +VVTYN++I G   A +  +A  L  EM+  G++PD  T+N+++D   K+  M +A  
Sbjct: 378 KLNVVTYNAMIGGIAKAGEMAKAMSLFNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACE 437

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M  R + P+  T+S L+ G C +  +  A E+   M   G K  VF Y
Sbjct: 438 LLAEMKARKLTPSPFTYSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMY 489



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 146/298 (48%), Gaps = 9/298 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           + +P P T +++L   L  +        +  ++   G+ P+++ Y  LI  + +  R   
Sbjct: 446 KLTPSPFT-YSVLISGLCHSSDLQKANEVLDQMIRNGVKPNVFMYGTLIKAYVQESRYEM 504

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +L  ++ +   PD   +  LI GLC   ++ EA  L   +   G KPN  TY   IN
Sbjct: 505 AIELLKIMIANGVLPDLFCYNCLIIGLCRAKKVEEAKMLLVDMGEKGIKPNAHTYGAFIN 564

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
              ++G   VA   F++M +     G+V  PN V YT +I G C  G   +A   F  M 
Sbjct: 565 LYSKSGEIQVAERYFKDMLSS----GIV--PNNVIYTILIKGHCDVGNTVEALSTFKCML 618

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +K + PD+  Y+++IH         EA  + ++ +  GV PDV  +N ++   CK G ++
Sbjct: 619 EKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSLISGFCKEGDIE 678

Query: 341 EASRLLELMILRGVNPNTSTFSTLMD--GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +AS+L + M+  G+NPN   ++TL++  G+C +G +  A +LF  M S G     + Y
Sbjct: 679 KASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISKGISPDGYIY 736



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/291 (29%), Positives = 148/291 (50%), Gaps = 9/291 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           LT F++           +   S+F    S G FP L   N L+    K   +   + V G
Sbjct: 172 LTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVYG 231

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++ +   PD   +T++IK  C    +++   + ++++   CKPN+ TY+  I GLC+TG
Sbjct: 232 SMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEK-ECKPNLFTYNAFIGGLCQTG 290

Query: 227 HTIVALNLFE-EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
               AL + +  M  G G       P+  TYT ++DG CK+    +AK +F  M    +N
Sbjct: 291 AVDEALEVKKLMMEKGLG-------PDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN 343

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+  TY +LI GF    +  EA  +  EM+ +G++ +VVT+N ++  + K G+M +A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M++ G+ P+T T++ L+DG+  +  +  A EL   M++     + F+Y
Sbjct: 404 FNEMLMAGIEPDTWTYNLLIDGYLKSHDMAKACELLAEMKARKLTPSPFTY 454



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 148/326 (45%), Gaps = 31/326 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA   F  ML  +   P + +++ +   L+K       + +F +   TG+ PD++ YN L
Sbjct: 609 EALSTFKCMLE-KGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTGVVPDVFLYNSL 667

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK--GLCAESRIMEAAALFTKLKAF 206
           I+ FCK G +     +   +L +   P+ V + +LI   G C    + EA  LF ++ + 
Sbjct: 668 ISGFCKEGDIEKASQLYDEMLHNGINPNIVVYNTLINDYGYCKSGNLTEAFKLFDEMISK 727

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEE--------MANGNGKFGVVCK-------- 250
           G  P+   Y  LI+G  + G+   AL+LF E        ++  N      CK        
Sbjct: 728 GISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKSVGSLSAFNSLIDSFCKHGKVIEAR 787

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       PN VTYT +ID   K   +++A++LFL M+ +NI P+ +TY SL+  +
Sbjct: 788 ELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFLDMETRNIIPNTLTYTSLLLSY 847

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
               +  +   L  +M  +G+  D + + V+    CK GK  EA +LL   ++ G+    
Sbjct: 848 NQIGNRFKMISLFKDMEARGIACDAIAYGVMASAYCKEGKSLEALKLLNKSLVEGIKLED 907

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
             F  L+   C   +++   EL   M
Sbjct: 908 DVFDALIFHLCKEKQISTVLELLSEM 933



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 118/256 (46%), Gaps = 7/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           +L  ++I I+ F  +G ++    V    +   F P  +   +L++ L   + +     ++
Sbjct: 171 NLTVFDIFIDKFRVLGFLNEASSVFIASISEGFFPTLICCNNLMRDLLKANMMGLFWKVY 230

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +      P+V TY+ +I   C+ G  I    +  EM          CKPN  TY   I
Sbjct: 231 GSMVEAKIVPDVYTYTNVIKAHCKVGDVIKGKMVLSEMEKE-------CKPNLFTYNAFI 283

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC+ G VD+A E+   M +K + PD  TY  L+ GFC      EA  +   M   G+ 
Sbjct: 284 GGLCQTGAVDEALEVKKLMMEKGLGPDGHTYTLLVDGFCKQKRSKEAKLIFESMPSSGLN 343

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+  T+  ++D   K G ++EA R+ + MI RG+  N  T++ ++ G    G +  A  L
Sbjct: 344 PNRFTYTALIDGFIKEGNIEEALRIKDEMITRGLKLNVVTYNAMIGGIAKAGEMAKAMSL 403

Query: 381 FVSMESMGCKHTVFSY 396
           F  M   G +   ++Y
Sbjct: 404 FNEMLMAGIEPDTWTY 419



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 165/399 (41%), Gaps = 22/399 (5%)

Query: 3   FVSSTCSFHFTSISISALRCNFSSSF-PHTRKPKS---SISKNEPSDPTTTAKLKESLRL 58
            +   C    T  ++S  +C       P  R   +   S+SKN  +       LK     
Sbjct: 597 LIKGHCDVGNTVEALSTFKCMLEKGLIPDIRAYSAIIHSLSKNGKTKEAMGVFLKFLKTG 656

Query: 59  TVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
            V D       +   CK   +GDI      +A  ++D ML+     P +  +N L     
Sbjct: 657 VVPDVFLYNSLISGFCK---EGDI-----EKASQLYDEMLH-NGINPNIVVYNTLINDYG 707

Query: 119 --KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
             K+ +      LF  + S G+ PD Y Y ILI+   K G +     +     +      
Sbjct: 708 YCKSGNLTEAFKLFDEMISKGISPDGYIYCILIDGCGKEGNLEKALSLFHEAQQKS-VGS 766

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
             AF SLI   C   +++EA  LF  +      PN++TY+ LI+   +      A  LF 
Sbjct: 767 LSAFNSLIDSFCKHGKVIEARELFDDMVDKKLTPNIVTYTILIDAYGKAEMMEEAEQLFL 826

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M   N        PNT+TYT+++    + G   K   LF  M+ + I  D + Y  +  
Sbjct: 827 DMETRN------IIPNTLTYTSLLLSYNQIGNRFKMISLFKDMEARGIACDAIAYGVMAS 880

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            +C      EA  LL + + +G++ +   F+ ++  LCK  ++     LL  M    ++ 
Sbjct: 881 AYCKEGKSLEALKLLNKSLVEGIKLEDDVFDALIFHLCKEKQISTVLELLSEMGKEELSL 940

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           ++ T +TL+ GF  +G  + A ++   M+ +G   T  S
Sbjct: 941 SSKTCNTLLLGFYKSGNEDEASKVLGVMQRLGWVPTSLS 979


>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
          Length = 418

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 94/272 (34%), Positives = 145/272 (53%), Gaps = 6/272 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P  V
Sbjct: 113 KLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVV 172

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           +F +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF EM
Sbjct: 173 SFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEM 232

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
             GNG       PN VT+TT+IDG CK G +D A E + +M  +  +PD++TYN+LI+G 
Sbjct: 233 I-GNG-----LVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGL 286

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   D  +A  L+ EM  +G++PD +T+  ++D  CK G ++ A    + MI   +  + 
Sbjct: 287 CKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDD 346

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             ++ L+ G C  G+   A+++   M S+G K
Sbjct: 347 VAYTALISGLCREGQSVDAEKMLREMLSVGLK 378



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 87/285 (30%), Positives = 150/285 (52%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N L+N + ++G +  GF 
Sbjct: 133 PASLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +TG   +A+  ++EM            P+ +TY T+I GLCK+G + +A++L  +M  K 
Sbjct: 253 KTGSIDLAMETYKEMLRQG------FSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D   A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKITYTTLIDGSCKEGDLETALYYRKRMIKENIRLDDVAYTALISGLCREGQSVDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDG 411



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 71/221 (32%), Positives = 109/221 (49%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L   L K    +    LF  +   GL P+  T+  LI+  CK G +      
Sbjct: 204 PDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTFTTLIDGHCKTGSIDLAMET 263

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR  F+PD + + +LI GLC +  + +A  L  ++   G KP+ ITY+TLI+G C+
Sbjct: 264 YKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCK 323

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL   + M   N       + + V YT +I GLC+EG    A+++  +M    +
Sbjct: 324 EGDLETALYYRKRMIKEN------IRLDDVAYTALISGLCREGQSVDAEKMLREMLSVGL 377

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            PD  TY  +I+ FC   D    + LL EM   G  P VVT
Sbjct: 378 KPDNGTYTMIINEFCKKGDVKTGSKLLKEMQRDGHVPCVVT 418



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L++  C+ G   +A ++F+E+     K+G+  +P+ V++ T+++G  + 
Sbjct: 131 GYPASLYFFNILMHRFCKEGEMRLAQSVFDEIT----KWGL--RPSVVSFNTLMNGYIRL 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M    + PDV TY+ LI+G C  +  N+AN L  EM+  G+ P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHASGVQPDVYTYSVLINGLCKESKMNDANELFGEMIGNGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CK G +D A    + M+ +G +P+  T++TL+ G C  G +  A++L   M  
Sbjct: 245 TTLIDGHCKTGSIDLAMETYKEMLRQGFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSM 304

Query: 387 MGCKHTVFSY 396
            G K    +Y
Sbjct: 305 KGLKPDKITY 314



 Score = 54.7 bits (130), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 42/195 (21%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC       A NL + + +  GK      F  +       + +   ++ +I 
Sbjct: 15  SYCTMIHFLCTHQMLPEAKNLIQIVVSRKGKDSASAVFEAILEAKGAQRSDVYVFSGLIT 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E F   ++        T   ++  F     +        E+++ G   
Sbjct: 75  AYLESGFLHDALECFRLTREHKFWVPFDTCRKVLEHFMKLKYFKLVWGFYKEILECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +   G+ P+  +F+TLM+G+   G ++    L 
Sbjct: 135 SLYFFNILMHRFCKEGEMRLAQSVFDEITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHASGVQPDVYTY 209


>gi|449459086|ref|XP_004147277.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
 gi|449501214|ref|XP_004161309.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59900-like [Cucumis sativus]
          Length = 908

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/287 (33%), Positives = 152/287 (52%), Gaps = 7/287 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + D M+ +   P       L+ G L K    +    L  ++   G+ P+L+ YN +IN  
Sbjct: 317 MMDEMIELGYVPSEAAVSGLIEG-LIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSL 375

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G++    ++   +      P+ V +T LI G    +++  A   F K+   G    V
Sbjct: 376 CKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATV 435

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            +Y+++IN  C+ G   +A  LF+EM +         KP   TYT++I G CK+G V KA
Sbjct: 436 YSYNSMINCQCKFGKMKMAELLFKEMVDKG------LKPTVATYTSLISGYCKDGLVPKA 489

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            +L+ +M  K I P+ VT+ +LI G C  N   EA+ L  EM++  + P+ VT+NV+++ 
Sbjct: 490 FKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEG 549

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            C+ G    A  LL+ MI +G++P+T T+  L+ G C TGRV+ AKE
Sbjct: 550 HCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKE 596



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 152/315 (48%), Gaps = 33/315 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + + L   LA+ + +  VL LF  L + G+ PD Y Y +++ C C++   +    +
Sbjct: 188 PEVRTLSALLNALARIRKFRQVLELFDTLVNAGVKPDCYIYTVVVKCLCELKDFNKAKEI 247

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + +   +  +   V +   I GLC   R+ EA  +   L   G K +++TY TL+ GLCR
Sbjct: 248 INQAEGNGCSLSIVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCR 307

Query: 225 TGHTIVALNLFEEMA-------------------------------NGNGKFGVVCKPNT 253
                V + + +EM                                N  GK GVV  PN 
Sbjct: 308 IQEFEVGMEMMDEMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVV--PNL 365

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
             Y ++I+ LCK G +++A+ LF  M ++ +NP+ VTY  LI GF      + A     +
Sbjct: 366 FVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNK 425

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M++ G+   V ++N +++  CK GKM  A  L + M+ +G+ P  +T+++L+ G+C  G 
Sbjct: 426 MIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGL 485

Query: 374 VNHAKELFVSMESMG 388
           V  A +L+  M   G
Sbjct: 486 VPKAFKLYHEMTGKG 500



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 97/325 (29%), Positives = 144/325 (44%), Gaps = 41/325 (12%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N+    L K+K     + + + L   GL  DL TY  L+   C++     G  ++ 
Sbjct: 260 IVTYNVFINGLCKSKRVWEAVEVKRSLGEKGLKADLVTYCTLVLGLCRIQEFEVGMEMMD 319

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++   + P   A + LI+GL     I  A  L  K+   G  PN+  Y+++IN LC+TG
Sbjct: 320 EMIELGYVPSEAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTG 379

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL----------------------- 263
               A  LF  MA           PN VTYT +IDG                        
Sbjct: 380 KLEEAELLFSVMAERG------LNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISA 433

Query: 264 ------------CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
                       CK G +  A+ LF +M DK + P V TY SLI G+C      +A  L 
Sbjct: 434 TVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLY 493

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM  +G+ P+ VTF  ++  LC+  KM EAS+L + M+   + PN  T++ L++G C  
Sbjct: 494 HEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKILPNEVTYNVLIEGHCRE 553

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G    A EL   M   G     ++Y
Sbjct: 554 GNTTRAFELLDEMIKKGLSPDTYTY 578



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N +   L KT   +    LF  +   GL P+  TY ILI+ F +  ++   F  
Sbjct: 363 PNLFVYNSMINSLCKTGKLEEAELLFSVMAERGLNPNDVTYTILIDGFGRRAKLDVAFYY 422

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++    +    ++ S+I   C   ++  A  LF ++   G KP V TY++LI+G C+
Sbjct: 423 FNKMIECGISATVYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCK 482

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L+ EM  G G       PNTVT+T +I GLC+   + +A +LF +M +  I
Sbjct: 483 DGLVPKAFKLYHEMT-GKG-----IAPNTVTFTALICGLCQINKMAEASKLFDEMVELKI 536

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN LI G C   +   A  LL EM+ +G+ PD  T+  ++  LC  G++ EA  
Sbjct: 537 LPNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKE 596

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  +  +    +   ++ L+ GFC  GR+  A      M   G +  + SY
Sbjct: 597 FINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSY 648



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 151/324 (46%), Gaps = 31/324 (9%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF  F+ M+    S   + S+N +  C  K         LFK +   GL P + TY  LI
Sbjct: 419 AFYYFNKMIECGISAT-VYSYNSMINCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLI 477

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G V   F +   +      P+ V FT+LI GLC  +++ EA+ LF ++      
Sbjct: 478 SGYCKDGLVPKAFKLYHEMTGKGIAPNTVTFTALICGLCQINKMAEASKLFDEMVELKIL 537

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVVCKP--- 251
           PN +TY+ LI G CR G+T  A  L +EM                 G    G V +    
Sbjct: 538 PNEVTYNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEF 597

Query: 252 -----------NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                      + + YT ++ G CKEG + +A     +M  + +  D+V+Y  LI G   
Sbjct: 598 INDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISGALN 657

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
            ND      LL EM  +G+QPD V + +++D   K+G + +A     +MI  G  PN+ T
Sbjct: 658 QNDRILFE-LLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVT 716

Query: 361 FSTLMDGFCLTGRVNHAKELFVSM 384
           ++ L++G    G VN AK LF  M
Sbjct: 717 YTALVNGLFKAGYVNEAKLLFKRM 740



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 136/279 (48%), Gaps = 7/279 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M     +P  +T + +L     +    D     F ++   G+   +Y+YN +
Sbjct: 383 EAELLFSVMAERGLNPNDVT-YTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSYNSM 441

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INC CK G++    ++   ++     P    +TSLI G C +  + +A  L+ ++   G 
Sbjct: 442 INCQCKFGKMKMAELLFKEMVDKGLKPTVATYTSLISGYCKDGLVPKAFKLYHEMTGKGI 501

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN +T++ LI GLC+      A  LF+EM        +   PN VTY  +I+G C+EG 
Sbjct: 502 APNTVTFTALICGLCQINKMAEASKLFDEMVE------LKILPNEVTYNVLIEGHCREGN 555

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A EL  +M  K ++PD  TY  LI G C     +EA   + ++  +  + D + +  
Sbjct: 556 TTRAFELLDEMIKKGLSPDTYTYRPLIAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTA 615

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           ++   CK G++ EA    + M+ RG+  +  +++ L+ G
Sbjct: 616 LLQGFCKEGRIKEALVARQEMVGRGLQMDLVSYAVLISG 654



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/371 (28%), Positives = 163/371 (43%), Gaps = 65/371 (17%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD M+ ++  P  +T +N+L     +  +      L   +   GL PD YTY  L
Sbjct: 523 EASKLFDEMVELKILPNEVT-YNVLIEGHCREGNTTRAFELLDEMIKKGLSPDTYTYRPL 581

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C  GRVS     +  +       D + +T+L++G C E RI EA     ++   G 
Sbjct: 582 IAGLCSTGRVSEAKEFINDLHHKHQRLDELCYTALLQGFCKEGRIKEALVARQEMVGRGL 641

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM--------------------ANGNGK---- 244
           + ++++Y+ LI+G       I+   L  EM                     +GN K    
Sbjct: 642 QMDLVSYAVLISGALNQNDRIL-FELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFE 700

Query: 245 -----FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-------------------- 279
                 G    PN+VTYT +++GL K G+V++AK LF +M                    
Sbjct: 701 FWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLT 760

Query: 280 KDKNIN--------------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           K+ N+                + VTYN LI G+C    + EA  LL  M+  G+ PD +T
Sbjct: 761 KEGNMENALQLHNAMLQGSFANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCIT 820

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++  + E CK G +D A  + E M+ RG+ P+   F+ L+   CL G ++ A +L   M 
Sbjct: 821 YSTFIYEYCKRGNVDAAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMM 880

Query: 386 SMGCKHTVFSY 396
             G K T  +Y
Sbjct: 881 LRGLKPTQSTY 891



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 127/253 (50%), Gaps = 7/253 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
           +  L + ++  G+ PD   Y ILI+ F K G +   F     ++   + P++V +T+L+ 
Sbjct: 663 LFELLREMHGKGMQPDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVN 722

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           GL     + EA  LF ++      PN ITY   ++ L + G+   AL L   M  G+   
Sbjct: 723 GLFKAGYVNEAKLLFKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQGSF-- 780

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
                 NTVTY  +I G C+ G   +A +L   M    + PD +TY++ I+ +C   + +
Sbjct: 781 -----ANTVTYNILIRGYCQIGKFQEAAKLLDVMIGIGMVPDCITYSTFIYEYCKRGNVD 835

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            A  +   M+ +G++PD V FN ++   C NG++D A +L   M+LRG+ P  ST+ +LM
Sbjct: 836 AAMDMWECMLQRGLKPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLM 895

Query: 366 DGFCLTGRVNHAK 378
                  R+   +
Sbjct: 896 VQLAQRARLTQVQ 908



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           + F++L     + K     + +   +   GL P++ T + L+N   ++ +      +   
Sbjct: 156 SGFDMLIQHYVQNKRVMDGVLVVNLMRDYGLLPEVRTLSALLNALARIRKFRQVLELFDT 215

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++ +   PD   +T ++K LC      +A  +  + +  GC  +++TY+  INGLC++  
Sbjct: 216 LVNAGVKPDCYIYTVVVKCLCELKDFNKAKEIINQAEGNGCSLSIVTYNVFINGLCKSKR 275

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+    E+    G+ G+  K + VTY T++ GLC+    +   E+  +M +    P 
Sbjct: 276 VWEAV----EVKRSLGEKGL--KADLVTYCTLVLGLCRIQEFEVGMEMMDEMIELGYVPS 329

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
               + LI G         A  LL ++   GV P++  +N +++ LCK GK++EA  L  
Sbjct: 330 EAAVSGLIEGLIKMGSIEGAFELLNKVGKLGVVPNLFVYNSMINSLCKTGKLEEAELLFS 389

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +M  RG+NPN  T++ L+DGF    +++ A   F  M   G   TV+SY
Sbjct: 390 VMAERGLNPNDVTYTILIDGFGRRAKLDVAFYYFNKMIECGISATVYSY 438



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 107/239 (44%), Gaps = 7/239 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    + +L     K+ +       +  +   G  P+  TY  L+N   K G V+   ++
Sbjct: 677 PDNVIYTILIDGFIKSGNLKKAFEFWYIMIGEGYVPNSVTYTALVNGLFKAGYVNEAKLL 736

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+L     P+ + +   +  L  E  +  A  L   +   G   N +TY+ LI G C+
Sbjct: 737 FKRMLVGEAIPNHITYGCFLDHLTKEGNMENALQLHNAMLQ-GSFANTVTYNILIRGYCQ 795

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L + M       G+   P+ +TY+T I   CK G VD A +++  M  + +
Sbjct: 796 IGKFQEAAKLLDVM------IGIGMVPDCITYSTFIYEYCKRGNVDAAMDMWECMLQRGL 849

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            PD V +N LIH  C   + + A  L  +MM +G++P   T++ +M +L +  ++ +  
Sbjct: 850 KPDRVVFNFLIHACCLNGELDRALQLRNDMMLRGLKPTQSTYHSLMVQLAQRARLTQVQ 908


>gi|410109931|gb|AFV61045.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           macrophylla]
          Length = 431

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 145/263 (55%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G      +L +EM+          KP+ +TYTT+IDG CKEG +D A E   QM  +NI
Sbjct: 295 KGDLKQVHHLIDEMSMKG------LKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM++ G++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHVPSVVTYNVLMNG 431



 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 95/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   +K +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYKEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN V +TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVIFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  + + L+ EM  +G++PD +T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M ++G K    +Y
Sbjct: 351 DEVAYTALISGLCQEGRSVDAEKMLREMLNVGLKPDARTY 390



 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN + ++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLVPNGVIFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +   L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQVHHLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A     +M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIDGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLNVGLKPDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K      V  L   ++  GL PD  TY  LI
Sbjct: 266 AMEIYKQMLSQSLLPDLITYNTLIYG-LCKKGDLKQVHHLIDEMSMKGLKPDKITYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    ++++     D VA+T+LI GLC E R ++A  +  ++   G K
Sbjct: 325 DGCCKEGDLDTAFEHRKQMIQENIRLDEVAYTALISGLCQEGRSVDAEKMLREMLNVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDARTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431


>gi|242069951|ref|XP_002450252.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
 gi|241936095|gb|EES09240.1| hypothetical protein SORBIDRAFT_05g002606 [Sorghum bicolor]
          Length = 406

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/335 (33%), Positives = 165/335 (49%), Gaps = 44/335 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCL--------AKTKHYDTVLSLFKRLN---ST 136
           ++A  +FD ML    SP  +T+FN LF  L        + T   + V+SLF R+    S 
Sbjct: 51  DDALKLFDEMLP-HASPASVTAFNQLFTVLFCASSRRSSSTSESELVVSLFNRMVRDCSN 109

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
            + P+LYTY+ILI CFC MG + HGF   G IL++ +  + +  T LIKGLC   R+ EA
Sbjct: 110 KVAPNLYTYSILIGCFCCMGFLEHGFAAFGLILKTGWRVNDIVITHLIKGLCDAKRVDEA 169

Query: 197 A----------ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
                       +    +   C  +V++Y+T+I G    G    A +LF EM        
Sbjct: 170 MNRAEEALELLQMMADCQGRSCPRDVVSYNTVIKGFFNEGQVDKAYSLFLEMG------- 222

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKEL-------------FLQMKDKNINPDVVTYNS 293
               PN VTYTTIIDGLCK   VDKA  +             +L  + K I PDV  Y+ 
Sbjct: 223 --VSPNVVTYTTIIDGLCKAQSVDKADGVKPDHDTYNCLIHGYLSTRQKGIKPDVTIYSI 280

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           ++HG+      +E +  L  M+  G+ P+   FN ++    K   +DEA  +   M  +G
Sbjct: 281 MLHGYGTKGALSEMHDRLNLMVANGISPNHRIFNTMIYAYAKEAMIDEAMHIFIKMKQQG 340

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++P+  +++ L+D  C  GRV+ A   F  M + G
Sbjct: 341 LSPDAVSYAELIDALCKLGRVDDAVLQFKQMINEG 375



 Score = 62.0 bits (149), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 46/93 (49%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN +    AK    D  + +F ++   GL PD  +Y  LI+  CK+GRV    +   +++
Sbjct: 313 FNTMIYAYAKEAMIDEAMHIFIKMKQQGLSPDAVSYAELIDALCKLGRVDDAVLQFKQMI 372

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
               TPD V F SL+ GLC   +  +    F+K
Sbjct: 373 NEGVTPDNVVFNSLVYGLCTVDKWEKVENYFSK 405


>gi|224113511|ref|XP_002316516.1| predicted protein [Populus trichocarpa]
 gi|222865556|gb|EEF02687.1| predicted protein [Populus trichocarpa]
          Length = 761

 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/276 (35%), Positives = 140/276 (50%), Gaps = 6/276 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K  +         +L + GL PD +TYN LI+ +CKMG + +   +
Sbjct: 284 PDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYNTLIDGYCKMGMLQNAEKI 343

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L   +   F PD   + SLI GLC    I  A ALF      G KP VI Y+ LI GLC+
Sbjct: 344 LQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGKGLKPTVILYNMLIKGLCQ 403

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + AL +  EM+  NG     C  +  TY  +I+GLCK G V  A  L      K  
Sbjct: 404 EGLILQALQMMNEMSE-NG-----CSSDIWTYNLVINGLCKMGCVSDANNLMNDAIAKGY 457

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV T+N+LI G+C          +L +M   GV PDV+T+N +++ L K  K ++   
Sbjct: 458 VPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVITYNSVLNGLSKAVKNEDLME 517

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             E M+ +G  PN  T++ L +  C  G+VN A +L
Sbjct: 518 TFETMVEKGCVPNKITYNILTESLCKAGKVNEALDL 553



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 98/337 (29%), Positives = 162/337 (48%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ +F+ ML +   P  +++FN L   L K         L  ++   G+  +L+T+NI 
Sbjct: 199 EAYELFNDMLRIGIFPD-VSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIF 257

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C+ G +S    +L  ++R   TPD V + +LI GLC  S ++EA     KL   G 
Sbjct: 258 IQGLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGL 317

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFE---------------EMANG------------ 241
           +P+  TY+TLI+G C+ G    A  + +                + NG            
Sbjct: 318 EPDGFTYNTLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALA 377

Query: 242 --NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
             N   G   KP  + Y  +I GLC+EG + +A ++  +M +   + D+ TYN +I+G C
Sbjct: 378 LFNAALGKGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNLVINGLC 437

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                ++AN L+ + + +G  PDV TFN ++D  CK  KM+   ++L  M   GV P+  
Sbjct: 438 KMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHGVTPDVI 497

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++++++G     +     E F +M   GC     +Y
Sbjct: 498 TYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITY 534



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 160/309 (51%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L ++ ++     +F R+ + G+ PD+YT+ I
Sbjct: 93  QEAVDVFERM-DFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPDVYTFTI 151

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I  FC+  R      +L  ++      +AVA+ +++ G   E+  +EA  LF  +   G
Sbjct: 152 RIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEENYRVEAYELFNDMLRIG 211

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V T++ L++ LC+ G    +    E + N   K G+    N  T+   I GLC++G
Sbjct: 212 IFPDVSTFNKLLHTLCKKGEVQES----ERLLNKVLKKGMC--SNLFTFNIFIQGLCRKG 265

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +  A  +   +  + + PDVVTYN+LI G C  ++  EA   L ++++ G++PD  T+N
Sbjct: 266 MLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEPDGFTYN 325

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK G +  A ++L+  I +G  P+  T+ +L++G C    ++ A  LF +    
Sbjct: 326 TLIDGYCKMGMLQNAEKILQGAICKGFVPDEFTYCSLINGLCQNDEIDRALALFNAALGK 385

Query: 388 GCKHTVFSY 396
           G K TV  Y
Sbjct: 386 GLKPTVILY 394



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 87/330 (26%), Positives = 147/330 (44%), Gaps = 43/330 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F+  L  +   P +  +N+L   L +       L +   ++  G   D++TYN+
Sbjct: 373 DRALALFNAALG-KGLKPTVILYNMLIKGLCQEGLILQALQMMNEMSENGCSSDIWTYNL 431

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CKMG VS    ++   +   + PD   F +LI G C + ++     +  K+ + G
Sbjct: 432 VINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILNKMWSHG 491

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+VITY++++NGL +       +  FE M          C PN +TY  + + LCK G
Sbjct: 492 VTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKG------CVPNKITYNILTESLCKAG 545

Query: 268 FVDKAKELFLQMKDKNINPDVV------------------------------------TY 291
            V++A +L  ++ +K I PD V                                    TY
Sbjct: 546 KVNEALDLVDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATY 605

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N +I+ F    D +    L +EM   G  PD  T+ V++D  C  G  D   + L  MI 
Sbjct: 606 NIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIE 665

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +G  P+ +TF  +++  C+  RV+ A ++ 
Sbjct: 666 KGFIPSLTTFGRVINCLCVQHRVHEAVDII 695



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/286 (26%), Positives = 128/286 (44%), Gaps = 42/286 (14%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++NL+   L K        +L     + G  PD++T+N LI+ +CK  ++     +L 
Sbjct: 426 IWTYNLVINGLCKMGCVSDANNLMNDAIAKGYVPDVFTFNTLIDGYCKQLKMETTIQILN 485

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++     TPD + + S++ GL    +  +    F  +   GC PN ITY+ L   LC+ G
Sbjct: 486 KMWSHGVTPDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAG 545

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG------------------- 267
               AL+L +E+ N     G+   P+TV++ TII G    G                   
Sbjct: 546 KVNEALDLVDEILNK----GIT--PDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVS 599

Query: 268 ------------FVDK-----AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
                       F +K      ++LFL+M      PD  TY  +I GFC   + +     
Sbjct: 600 HTTATYNIMINAFAEKLDLHMGEKLFLEMGAGGCAPDTYTYRVMIDGFCITGNTDSGYKF 659

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           L+EM+++G  P + TF  +++ LC   ++ EA  ++  M+  G+ P
Sbjct: 660 LLEMIEKGFIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVP 705



 Score =  111 bits (277), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 67/245 (27%), Positives = 120/245 (48%), Gaps = 6/245 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G+V     V  R+      P  +++ +++  L       +A  +F ++K  G  P+
Sbjct: 86  YGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFLRMKNVGIVPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V T++  I   CRT     AL L   M +        C+ N V Y T++ G  +E +  +
Sbjct: 146 VYTFTIRIKSFCRTKRPHSALRLLNNMVSQG------CQLNAVAYCTVVAGFYEENYRVE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A ELF  M    I PDV T+N L+H  C   +  E+  LL +++ +G+  ++ TFN+ + 
Sbjct: 200 AYELFNDMLRIGIFPDVSTFNKLLHTLCKKGEVQESERLLNKVLKKGMCSNLFTFNIFIQ 259

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G +  A  +L+ +I  G+ P+  T++TL+ G C    V  A++    + + G + 
Sbjct: 260 GLCRKGMLSGAMSMLDSVIREGLTPDVVTYNTLICGLCKNSNVVEAEKYLHKLVNGGLEP 319

Query: 392 TVFSY 396
             F+Y
Sbjct: 320 DGFTY 324



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 7/221 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L+K    + ++  F+ +   G  P+  TYNIL    CK G+V+    +
Sbjct: 494 PDVITYNSVLNGLSKAVKNEDLMETFETMVEKGCVPNKITYNILTESLCKAGKVNEALDL 553

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
           +  IL    TPD V+F ++I G      +  A  LF ++ + +       TY+ +IN   
Sbjct: 554 VDEILNKGITPDTVSFATIISGFANNGDLKGAYQLFRRMGEQYKVSHTTATYNIMINAFA 613

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                 +   LF EM  G       C P+T TY  +IDG C  G  D   +  L+M +K 
Sbjct: 614 EKLDLHMGEKLFLEMGAGG------CAPDTYTYRVMIDGFCITGNTDSGYKFLLEMIEKG 667

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
             P + T+  +I+  C  +  +EA  ++  M+  G+ P+VV
Sbjct: 668 FIPSLTTFGRVINCLCVQHRVHEAVDIIHFMVHNGIVPEVV 708



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 93/196 (47%), Gaps = 6/196 (3%)

Query: 194 MEAAALFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           ++A  +F K+K   G K +++TY  +I  L   G+ +   N+  E      +  +     
Sbjct: 21  LKALEMFNKVKREDGFKHSLLTYKCIIQKLGFHGNFVAMENVLAET-----RMDIDNSLL 75

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
              Y   +    ++G V +A ++F +M   N  P V++YN++++    +  + +A+ + +
Sbjct: 76  EGVYIGAMKSYGRKGKVQEAVDVFERMDFYNCEPSVLSYNAIMNILVESGYFKQAHKVFL 135

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M + G+ PDV TF + +   C+  +   A RLL  M+ +G   N   + T++ GF    
Sbjct: 136 RMKNVGIVPDVYTFTIRIKSFCRTKRPHSALRLLNNMVSQGCQLNAVAYCTVVAGFYEEN 195

Query: 373 RVNHAKELFVSMESMG 388
               A ELF  M  +G
Sbjct: 196 YRVEAYELFNDMLRIG 211


>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
          Length = 466

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 158/292 (54%), Gaps = 15/292 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +F++L   L +    D+ + + +++   G  PD   YNI+IN   + GRV     +
Sbjct: 142 PNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNIIINSLSERGRVDDALRL 201

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     PDA+ F +++KG C   R  +A+ L  ++    C    +T++ LI+ LC+
Sbjct: 202 LNSMV---CKPDALGFNAVLKGFCRAERWHDASELIAQMFRDDCPLIEMTFNILIDMLCQ 258

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +FE+M          C P+ VTY+++++G  ++G V+ A +LF  M  K  
Sbjct: 259 NGLVNYATQVFEQMPRYR------CTPDIVTYSSLLNGFSEQGLVEVAIQLFRSMPCK-- 310

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+ +YN+++ G C A  W +A  L+ EM+ +   P+ VTFN++++ LC+ G +D A  
Sbjct: 311 -PDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIE 369

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +LE M   G  P+  T++ L++GF   GR++ A +L   + +M CK    SY
Sbjct: 370 VLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKL---LSTMSCKPDAISY 418



 Score =  141 bits (356), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 124/245 (50%), Gaps = 12/245 (4%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD YTYN ++   C   +      ++  ++R+   P+ V F + I+  C    +  A  L
Sbjct: 5   PDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRAVQL 64

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++  +GC P+V+ YSTLING    GH   AL+L   M         +CKPNTV Y   
Sbjct: 65  LDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTM---------LCKPNTVCYNAA 115

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GLC     +   EL  +M  K  +P+  T++ LI   C  N  + A  +L +M   G 
Sbjct: 116 LKGLCIAERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGC 175

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PD V +N+I++ L + G++D+A RLL  M+ +   P+   F+ ++ GFC   R + A E
Sbjct: 176 EPDTVNYNIIINSLSERGRVDDALRLLNSMVCK---PDALGFNAVLKGFCRAERWHDASE 232

Query: 380 LFVSM 384
           L   M
Sbjct: 233 LIAQM 237



 Score =  139 bits (349), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 96/327 (29%), Positives = 153/327 (46%), Gaps = 44/327 (13%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P  P   ++N +   L   K ++    L   +      P+  T+   I  FC+ G +   
Sbjct: 2   PVAPDTYTYNTVLKGLCIAKKWEEAEELMAEMIRNRCPPNEVTFATQIRSFCQNGLLDRA 61

Query: 162 FVVLGRILRSCFTPDAVAFTSLI--------------------------------KGLCA 189
             +L ++ R   TPD V +++LI                                KGLC 
Sbjct: 62  VQLLDQMPRYGCTPDVVIYSTLINGFSEQGHVDQALDLLNTMLCKPNTVCYNAALKGLCI 121

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             R  +   L  ++   GC PN  T+S LI+ LC+      A+ + E+M     K+G  C
Sbjct: 122 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQME----KYG--C 175

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+TV Y  II+ L + G VD A  L   M  K   PD + +N+++ GFC A  W++A+ 
Sbjct: 176 EPDTVNYNIIINSLSERGRVDDALRLLNSMVCK---PDALGFNAVLKGFCRAERWHDASE 232

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L+ +M         +TFN+++D LC+NG ++ A+++ E M      P+  T+S+L++GF 
Sbjct: 233 LIAQMFRDDCPLIEMTFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFS 292

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G V  A +LF    SM CK  +FSY
Sbjct: 293 EQGLVEVAIQLF---RSMPCKPDIFSY 316



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 114/219 (52%), Gaps = 14/219 (6%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN+L   L +    +    +F+++      PD+ TY+ L+N F + G V     V  ++
Sbjct: 248 TFNILIDMLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGFSEQGLVE----VAIQL 303

Query: 169 LRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
            RS    PD  ++ +++KGLC  +R  +A  L  ++    C PN +T++ LIN LC+ G 
Sbjct: 304 FRSMPCKPDIFSYNAVLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGL 363

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ + E+M N    +G    P+  TY  +I+G  ++G +D A +L   M  K   PD
Sbjct: 364 VDRAIEVLEQMPN----YGST--PDIFTYNALINGFSEQGRLDDALKLLSTMSCK---PD 414

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            ++YNS + G C A  W +A  L+ EM+     P+ VTF
Sbjct: 415 AISYNSTLKGLCRAERWQDAEELVAEMLRNKCTPNEVTF 453



 Score = 88.6 bits (218), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/209 (26%), Positives = 96/209 (45%), Gaps = 13/209 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  +F+ M   R +P  +T  +LL G  ++    +  + LF+   S    PD+++YN 
Sbjct: 263 NYATQVFEQMPRYRCTPDIVTYSSLLNG-FSEQGLVEVAIQLFR---SMPCKPDIFSYNA 318

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   C+  R      ++  ++     P+ V F  LI  LC +  +  A  +  ++  +G
Sbjct: 319 VLKGLCRAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYG 378

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ TY+ LING    G    AL L   M+         CKP+ ++Y + + GLC+  
Sbjct: 379 STPDIFTYNALINGFSEQGRLDDALKLLSTMS---------CKPDAISYNSTLKGLCRAE 429

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH 296
               A+EL  +M      P+ VT+    H
Sbjct: 430 RWQDAEELVAEMLRNKCTPNEVTFKYANH 458


>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
          Length = 542

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 147/292 (50%), Gaps = 7/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S N+L   L      ++ L +   +   G+ PD+ TY  ++  +C  G +     +
Sbjct: 198 PNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQL 257

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+ S   PDA  +T LI G C   ++ +AA +  ++ A G +PN +TYS +I   C+
Sbjct: 258 FDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCK 317

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A +L  EM       G    P+T     ++D LC++G   +A E++ QM  K++
Sbjct: 318 ERKSTEARDLTREM------LGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSV 371

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD    ++LI+  C      EA  L  E +++G  P ++T+N ++  LC+NG++ EA R
Sbjct: 372 PPDNTVVSTLIYWLCKKGMVQEARKLFDE-LERGFLPSLLTYNSLIIGLCENGELQEAGR 430

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + M+ R   PN  T+  L+ GFC  G+ N    LF  M S GC  + F Y
Sbjct: 431 VWDDMVERRYEPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTPSKFLY 482



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 8/214 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
            TP+ V+   L+KGL     +  A  +  ++  +G  P+V+TY+T++   C  G    A 
Sbjct: 196 ITPNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQ 255

Query: 233 NLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
            LF+++ A+G        +P+   YT +IDG C    +  A  +  +M    + P+ VTY
Sbjct: 256 QLFDDIIASGR-------RPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTY 308

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           + +I   C      EA  L  EM+  G  PD      ++D LC++GK  EA+ +   M+ 
Sbjct: 309 SVVIEACCKERKSTEARDLTREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVK 368

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           + V P+ +  STL+   C  G V  A++LF  +E
Sbjct: 369 KSVPPDNTVVSTLIYWLCKKGMVQEARKLFDELE 402



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 123/278 (44%), Gaps = 23/278 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T + +L       +       +   + + G+ P+  TY+++I   CK  + +    +
Sbjct: 268 PDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEARDL 327

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L + + PD      ++  LC + +  EA  ++ ++      P+    STLI  LC+
Sbjct: 328 TREMLGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIYWLCK 387

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF+E+  G         P+ +TY ++I GLC+ G + +A  ++  M ++  
Sbjct: 388 KGMVQEARKLFDELERG-------FLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRY 440

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TY +LI GFC     NE   L  EMM +G  P    +  ++D L K    D    
Sbjct: 441 EPNAMTYEALIKGFCKIGKSNEGYALFKEMMSRGCTPSKFLYQALVDSLSKPSHDDTVCT 500

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           ++E   LRG +         +DG        H+ E+F+
Sbjct: 501 IVEAAALRGQD--------FLDG--------HSWEIFI 522



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 93/190 (48%), Gaps = 5/190 (2%)

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF  L +F  +P+  +++ L++ L       +A  LF           +   PN V+   
Sbjct: 151 LFLSLPSFNSRPSTRSFNALLHSLVSARRLRLAAALFRAAPTK-----LYITPNLVSCNI 205

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ GL   G ++ A ++  +M    I PDVVTY +++  +C   D   A  L  +++  G
Sbjct: 206 LLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQQLFDDIIASG 265

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +PD   + V++D  C + K+ +A+R+++ M   GV PN  T+S +++  C   +   A+
Sbjct: 266 RRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEAR 325

Query: 379 ELFVSMESMG 388
           +L   M   G
Sbjct: 326 DLTREMLGAG 335



 Score = 71.2 bits (173), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 60/113 (53%)

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P++V+ N L+ G     D N A  +L EM+  G+ PDVVT+  ++   C  G ++ A 
Sbjct: 196 ITPNLVSCNILLKGLVGIGDLNSALKVLDEMIGWGIVPDVVTYTTVLTAYCAKGDLEGAQ 255

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L + +I  G  P+ + ++ L+DG+C   ++  A  +   M + G +    +Y
Sbjct: 256 QLFDDIIASGRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTY 308


>gi|356564752|ref|XP_003550612.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 544

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A C+F  ++         T FN+L   L      D    L   + S G  PD+ TYNI
Sbjct: 195 DDAICLFRELMRSHSCLDAFT-FNILIRGLCTAGDVDEAFELLGDMGSFGCSPDIVTYNI 253

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           L++  C++ +V     +L  +   C F P+ V++T++I G C  S++ EA++LF ++   
Sbjct: 254 LLHGLCRIDQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRS 313

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KPNV T+S L++G  + G    AL + +++          C PN +T T++I+G C+ 
Sbjct: 314 GTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHG------CAPNVITLTSLINGYCRA 367

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G+V+   +L+ +M  +NI  ++ TY+ LI   C +N   EA  LL  +    + P    +
Sbjct: 368 GWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVY 427

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK+G +DEA+ ++  M  +   P+  TF+ L+ G C+ GR   A  +F  M +
Sbjct: 428 NPVIDGYCKSGNIDEANAIVAEMEEK-CKPDKLTFTILIIGHCMKGRTPEAIGIFYKMLA 486

Query: 387 MGC 389
            GC
Sbjct: 487 SGC 489



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 144/311 (46%), Gaps = 10/311 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  ++D M +     P       L    A    +D    L      +G+  D+  YN 
Sbjct: 125 NSAKLLYDSMRS-DGQLPDSRLLGFLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNN 183

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +N   K  R+     +   ++RS    DA  F  LI+GLC    + EA  L   + +FG
Sbjct: 184 FLNILIKHNRLDDAICLFRELMRSHSCLDAFTFNILIRGLCTAGDVDEAFELLGDMGSFG 243

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK--PNTVTYTTIIDGLCK 265
           C P+++TY+ L++GLCR      A +L EE+        + C+  PN V+YTT+I G C+
Sbjct: 244 CSPDIVTYNILLHGLCRIDQVDRARDLLEEVC-------LKCEFAPNVVSYTTVISGYCR 296

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              +D+A  LF +M      P+V T+++L+ GF  A D   A  +  +++  G  P+V+T
Sbjct: 297 LSKMDEASSLFYEMVRSGTKPNVFTFSALVDGFVKAGDMASALGMHKKILFHGCAPNVIT 356

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
              +++  C+ G ++    L   M  R +  N  T+S L+   C + R+  A+ L   ++
Sbjct: 357 LTSLINGYCRAGWVNHGLDLWREMNARNIPANLYTYSVLISALCKSNRLQEARNLLRILK 416

Query: 386 SMGCKHTVFSY 396
                   F Y
Sbjct: 417 QSDIVPLAFVY 427



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 86/311 (27%), Positives = 149/311 (47%), Gaps = 7/311 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           PN  F  F +            ++N+L   L +   +++   L+  + S G  PD     
Sbjct: 88  PNLGFKFFRFTRERLSMSHSFWTYNMLLRSLCQAGLHNSAKLLYDSMRSDGQLPDSRLLG 147

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            L++ F    R      +L     S    D + + + +  L   +R+ +A  LF +L   
Sbjct: 148 FLVSSFALADRFDVSKELLAEAQCSGVQVDVIVYNNFLNILIKHNRLDDAICLFRELMRS 207

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
               +  T++ LI GLC  G    A  L  +M    G FG  C P+ VTY  ++ GLC+ 
Sbjct: 208 HSCLDAFTFNILIRGLCTAGDVDEAFELLGDM----GSFG--CSPDIVTYNILLHGLCRI 261

Query: 267 GFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
             VD+A++L  ++  K    P+VV+Y ++I G+C  +  +EA+ L  EM+  G +P+V T
Sbjct: 262 DQVDRARDLLEEVCLKCEFAPNVVSYTTVISGYCRLSKMDEASSLFYEMVRSGTKPNVFT 321

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F+ ++D   K G M  A  + + ++  G  PN  T ++L++G+C  G VNH  +L+  M 
Sbjct: 322 FSALVDGFVKAGDMASALGMHKKILFHGCAPNVITLTSLINGYCRAGWVNHGLDLWREMN 381

Query: 386 SMGCKHTVFSY 396
           +      +++Y
Sbjct: 382 ARNIPANLYTY 392



 Score = 73.6 bits (179), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 1/129 (0%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N R  P  L ++++L   L K+       +L + L  + + P  + YN +I+ +CK G 
Sbjct: 380 MNARNIPANLYTYSVLISALCKSNRLQEARNLLRILKQSDIVPLAFVYNPVIDGYCKSGN 439

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     ++  +   C  PD + FT LI G C + R  EA  +F K+ A GC P+ IT  T
Sbjct: 440 IDEANAIVAEMEEKC-KPDKLTFTILIIGHCMKGRTPEAIGIFYKMLASGCTPDDITIRT 498

Query: 218 LINGLCRTG 226
           L + L ++G
Sbjct: 499 LSSCLLKSG 507


>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g16880-like [Vitis vinifera]
          Length = 778

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 110/338 (32%), Positives = 177/338 (52%), Gaps = 19/338 (5%)

Query: 56  LRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFG 115
           LRLT   +A L+  +    +S GQ       P+ AF IF  M  +R  P  LT   LL  
Sbjct: 128 LRLTSPSKALLDTAIGAYVQS-GQ-------PHHAFQIFKKMKRLRLRPNLLTCNTLLNS 179

Query: 116 CLAKTKHYDTVLS--LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCF 173
            +     +    S   F      G+ P++ T+NI+I  +C   +       L  + +   
Sbjct: 180 LVRYPSSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKDAVEFLNVMGKYNC 239

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           +PD V + +++  LC + R+ +A  L   +K+ G  PN  TY+ L+ G C+ G    A N
Sbjct: 240 SPDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAAN 299

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           + E M   N        P+  TY  +I+GLC EG +++A +L  +M++  + PDVV+YN+
Sbjct: 300 VIELMTQNN------LLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNT 353

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI+G    +  +EA  LL EM ++GV+P+ VT N+++   CK GKMD+AS  +  M   G
Sbjct: 354 LINGCLEWSKISEAFKLLEEMSEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESG 413

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            +P+  T++TL++G+C  G +  A   F +M+ MG K+
Sbjct: 414 FSPDCVTYNTLINGYCKAGNMGEA---FRTMDEMGRKN 448



 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/282 (34%), Positives = 147/282 (52%), Gaps = 6/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +   L K         L   + S GL P+  TYNIL+  +CKMG +     V
Sbjct: 241 PDNVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANV 300

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  + ++   PD   +  LI GLC E RI EA  L  +++     P+V++Y+TLING   
Sbjct: 301 IELMTQNNLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLE 360

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L EEM+      GV  KPN VT+  ++   CKEG +D A     +M++   
Sbjct: 361 WSKISEAFKLLEEMSEK----GV--KPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGF 414

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD VTYN+LI+G+C A +  EA   + EM  + ++ D VT N I+  LC+  K++EA +
Sbjct: 415 SPDCVTYNTLINGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYK 474

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           LL     RG   +  ++ TL+ G+   G V+ A +L+  M+ 
Sbjct: 475 LLSSARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKE 516



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 155/309 (50%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF + + M + +   P   + N++     K    D   +   ++  +G  PD  TYN L
Sbjct: 366 EAFKLLEEM-SEKGVKPNAVTHNIMVKWYCKEGKMDDASNTITKMEESGFSPDCVTYNTL 424

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN +CK G +   F  +  + R     D+V   ++++ LC E ++ EA  L +  +  G 
Sbjct: 425 INGYCKAGNMGEAFRTMDEMGRKNMKMDSVTLNTILRTLCREKKLEEAYKLLSSARKRGY 484

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + ++Y TLI G  + G+   AL L++EM            P+TVTY  II GLC+ G 
Sbjct: 485 FIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKE------IIPSTVTYNCIIGGLCQCGK 538

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++A     ++ +  + PD  TYN+++HG+C   D  +A     +M++   +PDV T N+
Sbjct: 539 TEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNI 598

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME--S 386
           ++  LC  G +++A +L    + +G   +T T++TL+   C  GR++ A  L   ME   
Sbjct: 599 LLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEKE 658

Query: 387 MGCKHTVFS 395
           +G  H  ++
Sbjct: 659 LGPDHYTYN 667



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/283 (27%), Positives = 123/283 (43%), Gaps = 29/283 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+  L     K  + D  L L+  +    + P   TYN +I   C+ G+       L  +
Sbjct: 490 SYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCGKTEQAISKLNEL 549

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L S   PD   + +++ G C E  + +A     K+     KP+V T + L+ GLC  G  
Sbjct: 550 LESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVL 609

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL LF    +           +TVTY T+I  LCKEG +D A  L  +M++K + PD 
Sbjct: 610 EKALKLFNTWVSKGKAI------DTVTYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDH 663

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD-----------------------VVT 325
            TYN++I     +    EA   + +M+++G  PD                        V 
Sbjct: 664 YTYNAIITALTDSGRIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVA 723

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           ++  + ELC  GK  +A R+      +G+  + ST+  LMDG 
Sbjct: 724 YSEWIKELCTEGKYKDAMRIFGESKQKGITVDKSTYINLMDGL 766



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 124/286 (43%), Gaps = 19/286 (6%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK 131
           CK+   G        EAF   D M   NM+       + N +   L + K  +    L  
Sbjct: 429 CKAGNMG--------EAFRTMDEMGRKNMKMDS---VTLNTILRTLCREKKLEEAYKLLS 477

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
                G F D  +Y  LI  + K G V     +   +      P  V +  +I GLC   
Sbjct: 478 SARKRGYFIDEVSYGTLIVGYFKDGNVDRALKLWDEMKEKEIIPSTVTYNCIIGGLCQCG 537

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           +  +A +   +L   G  P+  TY+T+++G CR G    A     +M   +       KP
Sbjct: 538 KTEQAISKLNELLESGLLPDETTYNTILHGYCREGDVEKAFQFHNKMVENS------FKP 591

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +  T   ++ GLC EG ++KA +LF     K    D VTYN+LI   C     ++A  LL
Sbjct: 592 DVFTCNILLRGLCMEGVLEKALKLFNTWVSKGKAIDTVTYNTLITSLCKEGRLDDAFNLL 651

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            EM ++ + PD  T+N I+  L  +G++ EA   +  M+ +G  P+
Sbjct: 652 SEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKMLEKGNLPD 697



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 117/274 (42%), Gaps = 30/274 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  ++D M      P  +T +N + G L +    +  +S    L  +GL PD  TYN 
Sbjct: 505 DRALKLWDEMKEKEIIPSTVT-YNCIIGGLCQCGKTEQAISKLNELLESGLLPDETTYNT 563

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ +C+ G V   F    +++ + F PD      L++GLC E  + +A  LF    + G
Sbjct: 564 ILHGYCREGDVEKAFQFHNKMVENSFKPDVFTCNILLRGLCMEGVLEKALKLFNTWVSKG 623

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              + +TY+TLI  LC+ G    A NL  EM     + G    P+  TY  II  L   G
Sbjct: 624 KAIDTVTYNTLITSLCKEGRLDDAFNLLSEMEEK--ELG----PDHYTYNAIITALTDSG 677

Query: 268 FVDKAKELFLQMKDKNINPD-----------------------VVTYNSLIHGFCYANDW 304
            + +A+E   +M +K   PD                        V Y+  I   C    +
Sbjct: 678 RIREAEEFMSKMLEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKY 737

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
            +A  +  E   +G+  D  T+  +MD L K  K
Sbjct: 738 KDAMRIFGESKQKGITVDKSTYINLMDGLIKRRK 771



 Score = 55.1 bits (131), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 36/144 (25%), Positives = 56/144 (38%), Gaps = 23/144 (15%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L   L K    D   +L   +    L PD YTYN +I      GR+      + ++
Sbjct: 630 TYNTLITSLCKEGRLDDAFNLLSEMEEKELGPDHYTYNAIITALTDSGRIREAEEFMSKM 689

Query: 169 LRSCFTPDAV-----------------------AFTSLIKGLCAESRIMEAAALFTKLKA 205
           L     PD V                       A++  IK LC E +  +A  +F + K 
Sbjct: 690 LEKGNLPDQVLQLDKNETVVTSETSEESDSSSVAYSEWIKELCTEGKYKDAMRIFGESKQ 749

Query: 206 FGCKPNVITYSTLINGLCRTGHTI 229
            G   +  TY  L++GL +   +I
Sbjct: 750 KGITVDKSTYINLMDGLIKRRKSI 773


>gi|115479179|ref|NP_001063183.1| Os09g0417500 [Oryza sativa Japonica Group]
 gi|50253027|dbj|BAD29277.1| putative fertility restorer homologue A [Oryza sativa Japonica
           Group]
 gi|113631416|dbj|BAF25097.1| Os09g0417500 [Oryza sativa Japonica Group]
          Length = 618

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 161/310 (51%), Gaps = 10/310 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+EA  +F  +  +    P L + N +   L K      V  LF  +   G+ P + TYN
Sbjct: 122 PDEALSVFGRLREL----PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYN 177

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LIN     G V+  + V  +++     P+ V +T++I  LC E  I +A  LF ++K  
Sbjct: 178 TLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMICALCEEDCIGDAEGLFLEMKEA 237

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PN+ TY+ L++   +  +   AL  + ++     K G+V  PN V +TT+IDGLC+ 
Sbjct: 238 GMRPNLYTYNALMSSHFKRDNIKHALVFYYDLL----KCGLV--PNDVIFTTLIDGLCQA 291

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             + +AK +FL M    + P V  YNSLIHG   +    EA     E++ +G++PD  T 
Sbjct: 292 NRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKGLRPDEFTC 351

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++++  LC  G+M  A+R LE+M   G+  N + ++ L+D +C +G ++ A      M  
Sbjct: 352 SIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSE 411

Query: 387 MGCKHTVFSY 396
           +G +  V +Y
Sbjct: 412 VGVEPNVVTY 421



 Score =  154 bits (390), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 12/310 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD+      +A+ ++D M+  R  P  +T +  +   L +         LF  +   G+
Sbjct: 186 QGDVA-----KAWEVWDQMVARRIDPNVVT-YTTMICALCEEDCIGDAEGLFLEMKEAGM 239

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+LYTYN L++   K   + H  V    +L+    P+ V FT+LI GLC  +RI EA  
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCQANRITEAKN 299

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F  +  +   P V  Y++LI+G  R+G+   AL  F+E+           +P+  T + 
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKG------LRPDEFTCSI 353

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ GLC  G +  A      M+   I  +   YN LI  +C + + +EA      M + G
Sbjct: 354 VVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVG 413

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V+P+VVT++ ++D   KNG+M+ A  +   M+ +GV PN  T++ L+ G    G ++ A 
Sbjct: 414 VEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAF 473

Query: 379 ELFVSMESMG 388
            L   ME  G
Sbjct: 474 WLQKEMEEKG 483



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 12/230 (5%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +  +G+  +   YN+LI+ +CK G +    V   R+      P+ V ++SLI G      
Sbjct: 374 MQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGE 433

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           +  A A++T++ A G +PNV+TY+ LI+G  + G    A  L +EM    G +      N
Sbjct: 434 MEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEE-KGIYS-----N 487

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQ---MKDKNINPDV---VTYNSLIHGFCYANDWNE 306
            +T + ++DGLC+E  V  A    ++    K    NP +   VTY +LI+G      +NE
Sbjct: 488 AITVSVLVDGLCRENRVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNE 547

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           A      M D G+ PD  T+ +++  LC  G +  A  L   M+  GV P
Sbjct: 548 ACHFFSCMRDSGMVPDRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 60/214 (28%), Positives = 98/214 (45%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N+L     K+ + D  L    R++  G+ P++ TY+ LI+   K G +     +   
Sbjct: 384 AAYNVLIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTE 443

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P+ V +T+LI G      +  A  L  +++  G   N IT S L++GLCR   
Sbjct: 444 MVAKGVEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEEKGIYSNAITVSVLVDGLCRENR 503

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+    E +            N+VTY T+I GL  +G  ++A   F  M+D  + PD
Sbjct: 504 VQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVPD 563

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
             TY  +I G C       A  L  +M+  GV+P
Sbjct: 564 RFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597


>gi|297796945|ref|XP_002866357.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312192|gb|EFH42616.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 907

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  +N+L   L K +     + + K L    L PD+ TY  L+   CK+     G  ++ 
Sbjct: 262 IVPYNVLIDGLCKKQKVWEAVGIKKDLAGKELKPDVVTYCTLVCGLCKVQEFEVGLEMID 321

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +LR  F+P   A +SL++GL    ++ EA  L  ++  FG  PN+  Y+ LI+ LC+  
Sbjct: 322 EMLRLRFSPSEAAVSSLVEGLRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSLCKGR 381

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  LF+ M    GK G+   PN VTY+ +ID  C+ G +D A     +M D  + P
Sbjct: 382 NFDEAELLFDRM----GKIGLC--PNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKP 435

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V  YNSLI+G C   D + A  L+ EM+++ ++P VVT+  +M   C  GK+++A RL 
Sbjct: 436 SVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLY 495

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  +G+ P+  TF+TL+ G    G +  A +LF  M     K    +Y
Sbjct: 496 HEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTY 545



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + D ML +R SP      +L+ G L K    +  L+L KR+   G+ P+++ YN LI+  
Sbjct: 319 MIDEMLRLRFSPSEAAVSSLVEG-LRKRGKVEEALNLVKRVAEFGVSPNIFVYNALIDSL 377

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK        ++  R+ +    P+ V ++ LI   C   ++  A +   ++   G KP+V
Sbjct: 378 CKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSFLGEMIDMGLKPSV 437

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             Y++LING C+ G    A +L  EM N         +P  VTYT+++ G C +G ++KA
Sbjct: 438 YPYNSLINGHCKFGDISAAESLMAEMINKK------LEPTVVTYTSLMGGYCSKGKINKA 491

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L+ +M  K I P + T+ +L+ G   A    +A  L  EM +  V+P+ VT+NV+++ 
Sbjct: 492 LRLYHEMTGKGIVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNVKPNRVTYNVMIEG 551

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C+ G M +A   L  MI +G+ P+T ++  L+ G CLTG+ + AK     +    C+  
Sbjct: 552 YCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELN 611

Query: 393 VFSY 396
              Y
Sbjct: 612 EICY 615



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/273 (31%), Positives = 145/273 (53%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L K +++D    LF R+   GL P+  TY+ILI+ FC+ G++      
Sbjct: 365 PNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMFCRRGKLDTALSF 424

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG ++     P    + SLI G C    I  A +L  ++     +P V+TY++L+ G C 
Sbjct: 425 LGEMIDMGLKPSVYPYNSLINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCS 484

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL L+ EM    GK G+V  P+  T+TT++ GL + G +  A +LF +M + N+
Sbjct: 485 KGKINKALRLYHEMT---GK-GIV--PSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWNV 538

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN +I G+C   + ++A   L EM+++G+ PD  ++  ++  LC  G+  EA  
Sbjct: 539 KPNRVTYNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKV 598

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++ +       N   ++ L+ GFC  G++  A
Sbjct: 599 FVDGLHKGNCELNEICYTGLLHGFCREGKLEEA 631



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/367 (29%), Positives = 160/367 (43%), Gaps = 77/367 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD M  +   P  +T +++L     +    DT LS    +   GL P +Y YN 
Sbjct: 384 DEAELLFDRMGKIGLCPNDVT-YSILIDMFCRRGKLDTALSFLGEMIDMGLKPSVYPYNS 442

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK G +S    ++  ++     P  V +TSL+ G C++ +I +A  L+ ++   G
Sbjct: 443 LINGHCKFGDISAAESLMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKG 502

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++ T++TL++GL R G    A+ LF EMA  N       KPN VTY  +I+G C+EG
Sbjct: 503 IVPSIYTFTTLLSGLFRAGLIRDAVKLFTEMAEWN------VKPNRVTYNVMIEGYCEEG 556

Query: 268 FVDKAKELFLQMKDKNINPDV-----------------------------------VTYN 292
            + KA E   +M +K I PD                                    + Y 
Sbjct: 557 NMSKAFEFLNEMIEKGIVPDTYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYT 616

Query: 293 SLIHGFCYANDWNEANC-----------------------------------LLIEMMDQ 317
            L+HGFC      EA                                     LL EM D+
Sbjct: 617 GLLHGFCREGKLEEALSVCQDMGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDR 676

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD V +  ++D   K G   EA  + +LMI  G  PN  T++ +++G C  G VN A
Sbjct: 677 GLKPDDVIYTSMIDAKSKTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEA 736

Query: 378 KELFVSM 384
           + L   M
Sbjct: 737 EILCSKM 743



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 153/366 (41%), Gaps = 65/366 (17%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  M      P  +T +N++     +  +          +   G+ PD Y+Y  L
Sbjct: 525 DAVKLFTEMAEWNVKPNRVT-YNVMIEGYCEEGNMSKAFEFLNEMIEKGIVPDTYSYRPL 583

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G+ S   V +  + +     + + +T L+ G C E ++ EA ++   +   G 
Sbjct: 584 IHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQDMGLRGV 643

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK----------------------FG 246
             +++ Y  LI+G  +     V L L +EM +   K                      FG
Sbjct: 644 DLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGDFKEAFG 703

Query: 247 VV-------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY-------- 291
           +        C PN VTYT +I+GLCK GFV++A+ L  +M+  N  P+ VTY        
Sbjct: 704 IWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGCFLDILT 763

Query: 292 ---------------------------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
                                      N LI GFC      EA+ L+  M+  GV PD +
Sbjct: 764 KGVGDMKKAVELHNAILKGLLANTATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCI 823

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+  ++ ELC+   + +A  L   M  +G+ P+   ++TL+ G C+ G +  A EL   M
Sbjct: 824 TYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEM 883

Query: 385 ESMGCK 390
              G K
Sbjct: 884 LRQGLK 889



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 8/267 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + +R     L  + +L     K K     L L K ++  GL PD   Y  +I+   K G 
Sbjct: 638 MGLRGVDLDLVCYGVLIDGSLKHKDRKVFLGLLKEMHDRGLKPDDVIYTSMIDAKSKTGD 697

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
               F +   ++     P+ V +T++I GLC    + EA  L +K++     PN +TY  
Sbjct: 698 FKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEILCSKMRPGNSVPNQVTYGC 757

Query: 218 LINGLCR-TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            ++ L +  G    A+ L   +  G          NT TY  +I G C++G +++A EL 
Sbjct: 758 FLDILTKGVGDMKKAVELHNAILKG-------LLANTATYNMLIRGFCRQGRMEEASELI 810

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M    ++PD +TY ++I   C  ND  +A  L   M ++G++PD V +N ++   C  
Sbjct: 811 TRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNSMTEKGIRPDRVAYNTLIHGCCVA 870

Query: 337 GKMDEASRLLELMILRGVNPNTSTFST 363
           G+M +A+ L   M+ +G+ PNT T  T
Sbjct: 871 GEMGKATELRNEMLRQGLKPNTETSET 897



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/328 (26%), Positives = 135/328 (41%), Gaps = 61/328 (18%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P   F+ LF C  K K                      ++++LI  + +  RV  G +V 
Sbjct: 137 PSEVFDALFSCYEKCK-----------------LSSSSSFDLLIQHYVRSRRVLDGVLVF 179

Query: 166 GRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ +    P+    ++L+ GL        A  LF  +   G +P+V  Y+ +I  LC 
Sbjct: 180 KMMMTKVSLLPEVRTLSALLHGLVKFRHFGLAMELFDDMINVGIRPDVYIYTGVIRSLCE 239

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                 A  +  +M A G       C  N V Y  +IDGLCK+  V +A  +   +  K 
Sbjct: 240 LKDLSRAKEMIVQMEATG-------CDVNIVPYNVLIDGLCKKQKVWEAVGIKKDLAGKE 292

Query: 284 INPDVVTYNSLIHGFCYANDW-----------------------------------NEAN 308
           + PDVVTY +L+ G C   ++                                    EA 
Sbjct: 293 LKPDVVTYCTLVCGLCKVQEFEVGLEMIDEMLRLRFSPSEAAVSSLVEGLRKRGKVEEAL 352

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L+  + + GV P++  +N ++D LCK    DEA  L + M   G+ PN  T+S L+D F
Sbjct: 353 NLVKRVAEFGVSPNIFVYNALIDSLCKGRNFDEAELLFDRMGKIGLCPNDVTYSILIDMF 412

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G+++ A      M  MG K +V+ Y
Sbjct: 413 CRRGKLDTALSFLGEMIDMGLKPSVYPY 440



 Score = 82.4 bits (202), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 96/208 (46%), Gaps = 9/208 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EAF I+D M+N    P  +T   ++ G L K    +    L  ++      P+  TY   
Sbjct: 700 EAFGIWDLMINEGCVPNEVTYTAVING-LCKAGFVNEAEILCSKMRPGNSVPNQVTYGCF 758

Query: 149 INCFCK-MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++   K +G +     +   IL+      A  +  LI+G C + R+ EA+ L T++   G
Sbjct: 759 LDILTKGVGDMKKAVELHNAILKGLLANTA-TYNMLIRGFCRQGRMEEASELITRMIGDG 817

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ ITY+T+I+ LCR      A+ L+  M           +P+ V Y T+I G C  G
Sbjct: 818 VSPDCITYTTMISELCRRNDVKKAIELWNSMTEKG------IRPDRVAYNTLIHGCCVAG 871

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLI 295
            + KA EL  +M  + + P+  T  + I
Sbjct: 872 EMGKATELRNEMLRQGLKPNTETSETTI 899



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 48/113 (42%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N+L     +    +    L  R+   G+ PD  TY  +I+  C+   V     +   
Sbjct: 788 ATYNMLIRGFCRQGRMEEASELITRMIGDGVSPDCITYTTMISELCRRNDVKKAIELWNS 847

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           +      PD VA+ +LI G C    + +A  L  ++   G KPN  T  T I+
Sbjct: 848 MTEKGIRPDRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLKPNTETSETTIS 900


>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Cucumis sativus]
          Length = 783

 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 153/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FNL+   L + + +   L+++ ++    L PD+ TY ILI+  CK  +     V+
Sbjct: 161 PDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCKTQDALVL 220

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      P+ + ++ ++ GLC   +I +A  LF+K++A GC  ++ITY+ L+NG C+
Sbjct: 221 FDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCK 280

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G+   A  L + +       GV+       Y  +I+GL +    ++A   + +M  +NI
Sbjct: 281 SGYLDDAFTLLQLLTKDGHILGVI------GYGCLINGLFRARRYEEAHMWYQKMLRENI 334

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+ Y  +I G        EA  LL EM ++G++PD + +N ++   C  G +DEA  
Sbjct: 335 KPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAES 394

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   +      PN  T+S L+ G C  G +N A+ +F  ME +GC  +V ++
Sbjct: 395 LRLEISKHDCFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTF 446



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 172/385 (44%), Gaps = 90/385 (23%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +FD M + R   P    ++++   L + K       LF ++ ++G   DL TYN+
Sbjct: 215 QDALVLFDEMTD-RGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNV 273

Query: 148 LINCFCKMGRVSHGFVVLG-----------------------------------RILRSC 172
           L+N FCK G +   F +L                                    ++LR  
Sbjct: 274 LLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLREN 333

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PD + +T +I+GL  E R+ EA  L  ++   G +P+ I Y+ LI G C  G+   A 
Sbjct: 334 IKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMGYLDEAE 393

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +L  E++  +      C PN  TY+ +I G+CK G ++KA+ +F +M+     P VVT+N
Sbjct: 394 SLRLEISKHD------CFPNNHTYSILICGMCKNGLINKAQHIFKEMEKLGCLPSVVTFN 447

Query: 293 SLIHGFCYANDWNEANCL------------------------------------------ 310
           SLI+G C AN   EA  L                                          
Sbjct: 448 SLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMERLCESGMI 507

Query: 311 ------LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
                 L++++D GV PD+ T+N++++  CK G ++ A +L + M L+G  P++ T+ TL
Sbjct: 508 LKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPDSVTYGTL 567

Query: 365 MDGFCLTGRVNHAKELFVSMESMGC 389
           +DG    GR   A E+F  M   GC
Sbjct: 568 IDGLYRAGRNEDALEIFEQMVKKGC 592



 Score =  142 bits (358), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 149/321 (46%), Gaps = 58/321 (18%)

Query: 114 FGCLA----KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +GCL     + + Y+     ++++    + PD+  Y I+I    + GRV+    +LG + 
Sbjct: 306 YGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMT 365

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD + + +LIKG C    + EA +L  ++    C PN  TYS LI G+C+ G   
Sbjct: 366 ERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMCKNGLIN 425

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK------------------------ 265
            A ++F+EM     K G  C P+ VT+ ++I+GLCK                        
Sbjct: 426 KAQHIFKEME----KLG--CLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFL 479

Query: 266 ------------------------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                                    G + KA +L +Q+ D  + PD+ TYN LI+GFC  
Sbjct: 480 RLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKF 539

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            + N A  L  EM  +G  PD VT+  ++D L + G+ ++A  + E M+ +G  P +ST+
Sbjct: 540 GNINGAFKLFKEMQLKGHMPDSVTYGTLIDGLYRAGRNEDALEIFEQMVKKGCVPESSTY 599

Query: 362 STLMDGFCLTGRVNHAKELFV 382
            T+M   C    ++ A  +++
Sbjct: 600 KTIMTWSCRENNISLALSVWM 620



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 81/317 (25%), Positives = 151/317 (47%), Gaps = 41/317 (12%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T  +L+ G L K   ++    + + L ++ +      +++LI  + + G         G 
Sbjct: 94  TVQDLIIGKLIKENAFELYWKVLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGL 153

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      PD  AF  ++  L  +   + A A++ ++      P+V+TY  LI+GLC+T  
Sbjct: 154 MRDFDCKPDLFAFNLILHFLVRKEAFLLALAVYNQMLKCNLNPDVVTYGILIHGLCKTCK 213

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
           T  AL LF+EM +     G++  PN + Y+ ++ GLC+   +  A+ LF +M+    N D
Sbjct: 214 TQDALVLFDEMTDR----GIL--PNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRD 267

Query: 288 VVTYNSLIHGFC---YAND--------------------------------WNEANCLLI 312
           ++TYN L++GFC   Y +D                                + EA+    
Sbjct: 268 LITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQ 327

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           +M+ + ++PDV+ + +++  L + G++ EA  LL  M  RG+ P+T  ++ L+ GFC  G
Sbjct: 328 KMLRENIKPDVMLYTIMIRGLSQEGRVTEALTLLGEMTERGLRPDTICYNALIKGFCDMG 387

Query: 373 RVNHAKELFVSMESMGC 389
            ++ A+ L + +    C
Sbjct: 388 YLDEAESLRLEISKHDC 404



 Score = 98.2 bits (243), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 6/233 (2%)

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL  +  S     + AF+ LI+         +A   F  ++ F CKP++  ++ +++ L 
Sbjct: 115 VLQELKNSAIKISSEAFSVLIEAYSEAGMDEKAVESFGLMRDFDCKPDLFAFNLILHFLV 174

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R    ++AL ++ +M   N        P+ VTY  +I GLCK      A  LF +M D+ 
Sbjct: 175 RKEAFLLALAVYNQMLKCN------LNPDVVTYGILIHGLCKTCKTQDALVLFDEMTDRG 228

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+ + Y+ ++ G C A    +A  L  +M   G   D++T+NV+++  CK+G +D+A 
Sbjct: 229 ILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRASGCNRDLITYNVLLNGFCKSGYLDDAF 288

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL+L+   G       +  L++G     R   A   +  M     K  V  Y
Sbjct: 289 TLLQLLTKDGHILGVIGYGCLINGLFRARRYEEAHMWYQKMLRENIKPDVMLY 341



 Score = 75.1 bits (183), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 85/187 (45%), Gaps = 19/187 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVL------------SLFKRLNS-TGLFPDLYTYNILINC 151
           P + +FN L   L K    +               SLF RL+  T    D+ +  +++  
Sbjct: 441 PSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLFLRLSQGTDKVFDIASLQVMMER 500

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            C+ G +   + +L +++ S   PD   +  LI G C    I  A  LF +++  G  P+
Sbjct: 501 LCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGHMPD 560

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY TLI+GL R G    AL +FE+M          C P + TY TI+   C+E  +  
Sbjct: 561 SVTYGTLIDGLYRAGRNEDALEIFEQMVKKG------CVPESSTYKTIMTWSCRENNISL 614

Query: 272 AKELFLQ 278
           A  ++++
Sbjct: 615 ALSVWMK 621


>gi|326525168|dbj|BAK07854.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 500

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/309 (32%), Positives = 155/309 (50%), Gaps = 15/309 (4%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +F    +    P    S+  +   L    H     SL   + ++G  P   TYN
Sbjct: 130 PLDALQLFRSAPSALSLPHSARSYTAVLAGLVAHSHLPLAHSLLADMRASGFGPTTATYN 189

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +L+   C          V  R+ R+   PDA ++ +LI GLC  SR +EA  LF+++   
Sbjct: 190 VLLKAHCSDAAAHIDDAV--RLFRNIPKPDACSYNTLIDGLCRRSRRVEAQELFSEMVEN 247

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P V+TY+T+IN L R G    AL +F+EM    G+ G+   PN VTY+++IDGLCK 
Sbjct: 248 GIAPTVVTYTTIINWLAREGCLDDALEMFDEM----GRRGIA--PNVVTYSSLIDGLCKG 301

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A +L  ++  +   P+ + Y+S+I+G C      EA  +L  M  QG +PD   F
Sbjct: 302 GRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQGRKPDAGLF 361

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNHAKE 379
             ++  LC  G+  EA+  L+ M+L GV PN  T+S        ++   C+ G V  A +
Sbjct: 362 GKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTWSLHVRINVAVVTALCVKGEVGRAFQ 421

Query: 380 LFVSMESMG 388
           ++ SM + G
Sbjct: 422 VYQSMRTRG 430



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 149/294 (50%), Gaps = 19/294 (6%)

Query: 105 PPLTSFNLLFG--CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P   ++N+L    C     H D  + LF+ +      PD  +YN LI+  C+  R     
Sbjct: 183 PTTATYNVLLKAHCSDAAAHIDDAVRLFRNIPK----PDACSYNTLIDGLCRRSRRVEAQ 238

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +   ++ +   P  V +T++I  L  E  + +A  +F ++   G  PNV+TYS+LI+GL
Sbjct: 239 ELFSEMVENGIAPTVVTYTTIINWLAREGCLDDALEMFDEMGRRGIAPNVVTYSSLIDGL 298

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    AL+L E +A        V  PNT+ Y+++I+GLCKEG + +A E+  +M+ +
Sbjct: 299 CKGGRAASALDLLERLAKE------VKLPNTIIYSSVINGLCKEGLLREAMEVLDRMRLQ 352

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV-------IMDELCK 335
              PD   +  LI G C A    EA   L EM+  GVQP+ VT+++       ++  LC 
Sbjct: 353 GRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTWSLHVRINVAVVTALCV 412

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            G++  A ++ + M  RG++   STF  L++ F     +  A  + + M S  C
Sbjct: 413 KGEVGRAFQVYQSMRTRGISTEPSTFHLLVEFFSKKNHLEKAAHVVLDMLSERC 466



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/355 (27%), Positives = 153/355 (43%), Gaps = 19/355 (5%)

Query: 45  DPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSP 104
           D  T A +  S+   +         L  R  S+G   +     + +  +F    ++ P  
Sbjct: 58  DAATAAPVSTSVPTQILPSPDTVSLLTSRLASAGLLPLATSLLSRSRALFPSNADLEPP- 116

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP-DLYTYNILINCFCKMGRVSHGFV 163
                F  L     +T      L LF+   S    P    +Y  ++        +     
Sbjct: 117 -----FLTLLRAFCRTHRPLDALQLFRSAPSALSLPHSARSYTAVLAGLVAHSHLPLAHS 171

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLC--AESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           +L  +  S F P    +  L+K  C  A + I +A  LF  +     KP+  +Y+TLI+G
Sbjct: 172 LLADMRASGFGPTTATYNVLLKAHCSDAAAHIDDAVRLFRNIP----KPDACSYNTLIDG 227

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           LCR    + A  LF EM   NG       P  VTYTTII+ L +EG +D A E+F +M  
Sbjct: 228 LCRRSRRVEAQELFSEMVE-NG-----IAPTVVTYTTIINWLAREGCLDDALEMFDEMGR 281

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           + I P+VVTY+SLI G C       A  LL  +  +   P+ + ++ +++ LCK G + E
Sbjct: 282 RGIAPNVVTYSSLIDGLCKGGRAASALDLLERLAKEVKLPNTIIYSSVINGLCKEGLLRE 341

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A  +L+ M L+G  P+   F  L+ G C  GR   A      M   G +    ++
Sbjct: 342 AMEVLDRMRLQGRKPDAGLFGKLIVGLCDAGRAVEAANYLDEMVLAGVQPNRVTW 396


>gi|302780731|ref|XP_002972140.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
 gi|300160439|gb|EFJ27057.1| hypothetical protein SELMODRAFT_450859 [Selaginella moellendorffii]
          Length = 482

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 107/340 (31%), Positives = 164/340 (48%), Gaps = 45/340 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTS-FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +F  M    P   P TS +N L G L + +        ++RL S+G      TYN
Sbjct: 118 DEAIQLFGEM--KAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYN 175

Query: 147 ILINCFCKMGRV-----------SHGFVV------------------------LGRILRS 171
           IL++ FCK  RV           + G VV                          R+ + 
Sbjct: 176 ILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGKIHEAELFFNRMEKD 235

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
              P  V FT LI GLC  +R+  A  +F      G  P+V+  S L++G C+ G    A
Sbjct: 236 GVRPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEA 295

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             +FE M N        C PN V+   +I+GLCK   + +A+E+F ++  +   PDVVTY
Sbjct: 296 WRIFELMTNRG------CTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTY 349

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL-MI 350
           ++ + G C A+  ++A  +L  ++D+G  PDVV +  ++  LC  G++DEA ++ E+ M 
Sbjct: 350 STFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMYTALISGLCSLGRLDEARKVFEVDMR 409

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             G  PN  T + L++GF L GR++ A+ELF      G +
Sbjct: 410 AAGCAPNNFTCNVLVNGFGLAGRLDEARELFQRFVERGVQ 449



 Score =  155 bits (391), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 139/286 (48%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N+    L K+   D   S F+ L       +  +YNILIN FCK  R+     + G +  
Sbjct: 70  NITIDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDEAIQLFGEMKA 129

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P    + +LI GLC   R+ EA   + +L + G   + ITY+ L++G C+      
Sbjct: 130 PGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVDGFCKADRVPE 189

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A+ L  E+     + GVV    +  Y  IID L K+G + +A+  F +M+   + P  VT
Sbjct: 190 AVELLNELV---ARGGVV---TSAPYNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVT 243

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +  LI G C AN    A  +    ++ G  P VV  + +MD  CK G +DEA R+ ELM 
Sbjct: 244 FTVLIDGLCKANRVARAKEIFFSYLESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMT 303

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RG  PN  + + L++G C   R++ A+E+F  +     K  V +Y
Sbjct: 304 NRGCTPNDVSCNILINGLCKAKRLSQAREVFEEVVKRQAKPDVVTY 349



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/289 (31%), Positives = 140/289 (48%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+N+L     KTK  D  + LF  + + G  P   TYN LI   C++ R+        R
Sbjct: 102 VSYNILINAFCKTKRIDEAIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYER 161

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L S      + +  L+ G C   R+ EA  L  +L A G       Y+ +I+ L + G 
Sbjct: 162 LLSSGAGASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAPYNCIIDTLFKKGK 221

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A   F  M     K GV  +P  VT+T +IDGLCK   V +AKE+F    +   +P 
Sbjct: 222 IHEAELFFNRME----KDGV--RPQEVTFTVLIDGLCKANRVARAKEIFFSYLESGGSPS 275

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VV  + L+ GFC     +EA  +   M ++G  P+ V+ N++++ LCK  ++ +A  + E
Sbjct: 276 VVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLSQAREVFE 335

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++ R   P+  T+ST MDG C   RV+ A+++   +   G    V  Y
Sbjct: 336 EVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVVMY 384



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 147/316 (46%), Gaps = 20/316 (6%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPN---EAFCIFDYM---------LNMRPSPPPLTS 109
           +R    Q   ER  SSG G  + IT N   + FC  D +         L  R        
Sbjct: 150 ERLGEAQQFYERLLSSGAG-ASFITYNILVDGFCKADRVPEAVELLNELVARGGVVTSAP 208

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K          F R+   G+ P   T+ +LI+  CK  RV+    +    L
Sbjct: 209 YNCIIDTLFKKGKIHEAELFFNRMEKDGVRPQEVTFTVLIDGLCKANRVARAKEIFFSYL 268

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S  +P  V  + L+ G C    + EA  +F  +   GC PN ++ + LINGLC+     
Sbjct: 269 ESGGSPSVVICSCLMDGFCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGLCKAKRLS 328

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  +FEE+     K      P+ VTY+T +DGLC+   VD+A+++   + DK   PDVV
Sbjct: 329 QAREVFEEVVKRQAK------PDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDVV 382

Query: 290 TYNSLIHGFCYANDWNEANCLL-IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            Y +LI G C     +EA  +  ++M   G  P+  T NV+++     G++DEA  L + 
Sbjct: 383 MYTALISGLCSLGRLDEARKVFEVDMRAAGCAPNNFTCNVLVNGFGLAGRLDEARELFQR 442

Query: 349 MILRGVNPNTSTFSTL 364
            + RGV P+  TFS +
Sbjct: 443 FVERGVQPDCRTFSAM 458



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 60/213 (28%), Positives = 100/213 (46%), Gaps = 6/213 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF   L    SP  +    L+ G   K    D    +F+ + + G  P+  + NILIN  
Sbjct: 263 IFFSYLESGGSPSVVICSCLMDG-FCKYGGVDEAWRIFELMTNRGCTPNDVSCNILINGL 321

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  R+S    V   +++    PD V +++ + GLC   R+ +A  +   L   G  P+V
Sbjct: 322 CKAKRLSQAREVFEEVVKRQAKPDVVTYSTFMDGLCRAHRVDQARQVLCMLVDKGGTPDV 381

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           + Y+ LI+GLC  G    A  +FE      G     C PN  T   +++G    G +D+A
Sbjct: 382 VMYTALISGLCSLGRLDEARKVFEVDMRAAG-----CAPNNFTCNVLVNGFGLAGRLDEA 436

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           +ELF +  ++ + PD  T++++ +       W+
Sbjct: 437 RELFQRFVERGVQPDCRTFSAMANNTAKTEGWD 469



 Score = 85.5 bits (210), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC   ++ EA  LF  L + GC    +    L+  L + G     L + + M +      
Sbjct: 9   LCHVGKLDEALELFHSLVSDGCG---LPADLLVRELSKAGRAEECLKVVKLMLDRQQ--- 62

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
            + + + V  T  ID LCK   +DKA+  F ++KD     + V+YN LI+ FC     +E
Sbjct: 63  -LRERHLVNIT--IDSLCKSDMIDKAESWFQELKDFRGLVNTVSYNILINAFCKTKRIDE 119

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L  EM   G  P   T+N ++  LC+  ++ EA +  E ++  G   +  T++ L+D
Sbjct: 120 AIQLFGEMKAPGCAPSTSTYNTLIGGLCRVERLGEAQQFYERLLSSGAGASFITYNILVD 179

Query: 367 GFCLTGRVNHAKELFVSMESMG 388
           GFC   RV  A EL   + + G
Sbjct: 180 GFCKADRVPEAVELLNELVARG 201


>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
          Length = 948

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/308 (29%), Positives = 145/308 (47%), Gaps = 10/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  ++  M++    PP   +F +    L +    +  L+L + +   G  PD   Y  +
Sbjct: 157 DALALYRRMVHRDRVPPTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTV 216

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C  G V+    +L  +L      D   F  +++G+C   R+ EAA L  ++   GC
Sbjct: 217 IHALCDQGGVTEAATLLNEMLLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGC 276

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V+TY  L+ GLCR            +        G V + N V + T+I G   EG 
Sbjct: 277 MPGVMTYGFLLQGLCRV----------RQADEARAMLGRVPELNVVLFNTVIGGCLAEGK 326

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A EL+  M  K   PD  TY+ L+HG C     + A  LL EM  +G  P+VVT+ +
Sbjct: 327 LAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTI 386

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   CKNG  D+   LLE M  +G+  N+  ++ ++   C  GR++ A  L   M S G
Sbjct: 387 VLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQG 446

Query: 389 CKHTVFSY 396
           C   + SY
Sbjct: 447 CNPDICSY 454



 Score =  158 bits (399), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 94/298 (31%), Positives = 141/298 (47%), Gaps = 23/298 (7%)

Query: 112 LLFGCLAKTKHYDTVLS-------------LFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           LL GC A    +D V+              L  R+ + G  P + TY  L+   C++ + 
Sbjct: 237 LLMGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQA 296

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                +LGR+       + V F ++I G  AE ++ EA  L+  +   GC+P+  TYS L
Sbjct: 297 DEARAMLGRVPEL----NVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSIL 352

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           ++GLC+ G    A+ L  EM     K G    PN VTYT ++   CK G  D  + L  +
Sbjct: 353 MHGLCKLGRISSAVRLLREME----KKGFA--PNVVTYTIVLHSFCKNGMWDDTRALLEE 406

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  K +  +   YN +I+  C     +EA  L+ EM  QG  PD+ ++N I+  LC N +
Sbjct: 407 MSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQ 466

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+EA  + E ++  GV  N  T++T++      GR   A  L   M   GC   V SY
Sbjct: 467 MEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSY 524



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 86/288 (29%), Positives = 149/288 (51%), Gaps = 8/288 (2%)

Query: 110 FN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           FN ++ GCLA+ K  +    L++ +   G  PD +TY+IL++  CK+GR+S    +L  +
Sbjct: 314 FNTVIGGCLAEGKLAEAT-ELYETMGLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREM 372

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +  F P+ V +T ++   C      +  AL  ++ A G   N   Y+ +I  LC+ G  
Sbjct: 373 EKKGFAPNVVTYTIVLHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRM 432

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ L +EM +        C P+  +Y TII  LC    +++A+ +F  + ++ +  + 
Sbjct: 433 DEAMGLIQEMRSQG------CNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANG 486

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           +TYN++IH       W +A  L  EM+  G   DVV++N ++  +CK+G +D +  LLE 
Sbjct: 487 ITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEE 546

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M  +G+ PN  +++ L+   C   RV  A EL   M + G    + +Y
Sbjct: 547 MAEKGIKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTY 594



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 161/308 (52%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M  ++   P   ++++L   L K     + + L + +   G  P++ TY I+
Sbjct: 329 EATELYETM-GLKGCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIV 387

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FCK G       +L  +     T ++  +  +I  LC + R+ EA  L  ++++ GC
Sbjct: 388 LHSFCKNGMWDDTRALLEEMSAKGLTLNSQGYNGMIYALCKDGRMDEAMGLIQEMRSQGC 447

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P++ +Y+T+I  LC       A ++FE +     + GVV   N +TY TII  L ++G 
Sbjct: 448 NPDICSYNTIIYHLCNNEQMEEAEHMFENLL----EEGVVA--NGITYNTIIHALLRDGR 501

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              A  L  +M     + DVV+YN LI   C   + + +  LL EM ++G++P+ V++N+
Sbjct: 502 WQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNI 561

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++ ELCK  ++ +A  L + M+ +G+ P+  T++TL++G C  G ++ A  L   + +  
Sbjct: 562 LISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEN 621

Query: 389 CKHTVFSY 396
               + +Y
Sbjct: 622 VHPDIITY 629



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 73/238 (30%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            +N +   L K    D  + L + + S G  PD+ +YN +I   C   ++     +   +
Sbjct: 418 GYNGMIYALCKDGRMDEAMGLIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENL 477

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L      + + + ++I  L  + R  +A  L  ++   GC  +V++Y+ LI  +C+ G+ 
Sbjct: 478 LEEGVVANGITYNTIIHALLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNV 537

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             +L L EEMA          KPN V+Y  +I  LCKE  V  A EL  QM ++ + PD+
Sbjct: 538 DRSLVLLEEMAEKG------IKPNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDI 591

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           VTYN+LI+G C     + A  LL ++ ++ V PD++T+N+++   CK   +D+A+ LL
Sbjct: 592 VTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLL 649



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 106/211 (50%), Gaps = 6/211 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +   L   +  +    +F+ L   G+  +  TYN +I+   + GR      +
Sbjct: 449 PDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    + D V++  LIK +C +  +  +  L  ++   G KPN ++Y+ LI+ LC+
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPNNVSYNILISELCK 568

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L ++M N          P+ VTY T+I+GLCK G++  A  L  ++ ++N+
Sbjct: 569 ERRVRDALELSKQMLNQG------LAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENV 622

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           +PD++TYN LI   C     ++A  LL   M
Sbjct: 623 HPDIITYNILISWHCKVRLLDDAAMLLNRAM 653



 Score = 59.7 bits (143), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 50/104 (48%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N+L   L K +     L L K++ + GL PD+ TYN LIN  CKMG +     +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNL 613

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           L ++      PD + +  LI   C    + +AA L  +  A  C
Sbjct: 614 LEKLHNENVHPDIITYNILISWHCKVRLLDDAAMLLNRAMAAVC 657


>gi|410109891|gb|AFV61025.1| pentatricopeptide repeat-containing protein 11, partial [Lantana
           cujabensis]
          Length = 409

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 147/272 (54%), Gaps = 6/272 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 113 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 172

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G  P+V TYS LINGLC+      A  LF+
Sbjct: 173 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFD 232

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 233 EMLVK----GLV--PNXVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 286

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 287 GLCKKGDLKQAHDLIDEMSXKGLKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRL 346

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   ++ L+ G C  GR   A+++   M S+G
Sbjct: 347 DDVAYTALISGLCQEGRSVDAEKMLREMLSVG 378



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 86/281 (30%), Positives = 149/281 (53%), Gaps = 6/281 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 135 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 194

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++  A  LF ++   G  PN +T++TLI+G C
Sbjct: 195 LKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTFTTLIDGHC 254

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 255 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSXKG 308

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 309 LKPDKFTYTTLIDGCCKEGDLDTAFXHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 368

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M
Sbjct: 369 KMLREMLSVGLXPDAGTYTMIINEFCKKGDVWKGSKLLKEM 409



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 59/190 (31%), Positives = 105/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L++  C+ G   VA ++F+ +     K+G+  +P+ V+Y T+++G  + 
Sbjct: 133 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT----KWGL--RPSVVSYNTLMNGYIRL 186

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M      PDV TY+ LI+G C  +  + AN L  EM+ +G+ P+ VTF
Sbjct: 187 GDLDEGFRLKSAMLASGXXPDVYTYSVLINGLCKESKMDGANELFDEMLVKGLVPNXVTF 246

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D A  + + M+ + + P+  T++TL+ G C  G +  A +L   M  
Sbjct: 247 TTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSX 306

Query: 387 MGCKHTVFSY 396
            G K   F+Y
Sbjct: 307 KGLKPDKFTY 316



 Score = 46.6 bits (109), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 39/195 (20%), Positives = 82/195 (42%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC       A +L E + +  GK      F  V       + +   ++ +I 
Sbjct: 17  SYCTMIHFLCTHQMLSEAKSLIEVVVSRKGKGSASAVFAAVLETKGNQRSDIYVFSGLIT 76

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E +    +  +     T   ++        +        E+++ G   
Sbjct: 77  AYLESGFLRDAIECYRLTXEHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 136

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK+G +  A  + + +   G+ P+  +++TLM+G+   G ++    L 
Sbjct: 137 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFRLK 196

Query: 382 VSMESMGCKHTVFSY 396
            +M + G    V++Y
Sbjct: 197 SAMLASGXXPDVYTY 211


>gi|242069107|ref|XP_002449830.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
 gi|241935673|gb|EES08818.1| hypothetical protein SORBIDRAFT_05g024080 [Sorghum bicolor]
          Length = 676

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 152/298 (51%), Gaps = 13/298 (4%)

Query: 95  DYMLNMRPSPPPL---TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           D +L +R    PL   T+  +L   L +  H+      F   +  G+ PD  ++  L+  
Sbjct: 134 DMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAF---DGMGVRPDARSFRALVLG 190

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            C+ GR      +L  + R  F+ D+   T +++  C + R  +   LF ++   G  PN
Sbjct: 191 CCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPGLFGRMVEMGNPPN 250

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+ Y+  ++GLC+ G+   A ++ EEM  G G      KPN  T+T++IDGLCK G+ ++
Sbjct: 251 VVNYTAWVDGLCKRGYVKQAFHVLEEMV-GKG-----LKPNVYTHTSLIDGLCKIGWTER 304

Query: 272 AKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           A  LFL++ K  +  P+V TY  +I G+C       A  LL  M++QG+ P+  T+  ++
Sbjct: 305 AFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLI 364

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           D  C+ G  D A  L+  M L G  PN  T++ ++ GFC  G++  A ++     S G
Sbjct: 365 DGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQG 422



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 153/293 (52%), Gaps = 7/293 (2%)

Query: 105 PPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P   SF  L+ GC  + + ++   +L   +   G   D  T  +++  FC+ GR      
Sbjct: 179 PDARSFRALVLGCCQEGR-FEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + GR++     P+ V +T+ + GLC    + +A  +  ++   G KPNV T+++LI+GLC
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T  A  LF ++   +       KPN  TYT +I G CKEG + +A+ L  +M ++ 
Sbjct: 298 KIGWTERAFRLFLKLVKSSSY-----KPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQG 352

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P+  TY +LI G C    ++ A  L+ +M  +G  P++ T+N I+   CK GK+ +A 
Sbjct: 353 LAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAY 412

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L +   +G+ P+  T++ L+   C  G + +A +LF  M    C   + +Y
Sbjct: 413 KVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTY 465



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 92/307 (29%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYN 146
            +AF + + M+     P   T  +L+ G L K    +    LF +L  S+   P+++TY 
Sbjct: 268 KQAFHVLEEMVGKGLKPNVYTHTSLIDG-LCKIGWTERAFRLFLKLVKSSSYKPNVHTYT 326

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ++I  +CK G+++   ++LGR++     P+   +T+LI G C       A  L  K+K  
Sbjct: 327 VMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLE 386

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN+ TY+ +I G C+ G    A  +   MA   G    +C P+ VTYT +I   CK+
Sbjct: 387 GFLPNIYTYNAIIGGFCKKGKIQQAYKVLR-MATSQG----LC-PDKVTYTMLITEHCKQ 440

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +  A +LF QM + + +PD+ TY ++I  +C      ++  L  + +  G+ P   T+
Sbjct: 441 GHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTY 500

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++   C+ GK   A ++ E M+  G  P+  T+  L+ G C   R+  A+ LF   E+
Sbjct: 501 TSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYGALISGLCKESRLEEARALF---ET 557

Query: 387 MGCKHTV 393
           M  KH V
Sbjct: 558 MLDKHMV 564



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 137/279 (49%), Gaps = 7/279 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           +   +  V  LF R+   G  P++  Y   ++  CK G V   F VL  ++     P+  
Sbjct: 228 RQGRFRDVPGLFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVY 287

Query: 179 AFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
             TSLI GLC       A  LF KL K+   KPNV TY+ +I G C+ G    A  L   
Sbjct: 288 THTSLIDGLCKIGWTERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGR 347

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M            PNT TYTT+IDG C+ G  D+A EL  +MK +   P++ TYN++I G
Sbjct: 348 MVEQG------LAPNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGG 401

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           FC      +A  +L     QG+ PD VT+ +++ E CK G +  A  L   M     +P+
Sbjct: 402 FCKKGKIQQAYKVLRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPD 461

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++T++  +C   ++  +++LF    S+G   T  +Y
Sbjct: 462 IDTYTTIIAMYCQQRQMEQSQQLFDKCLSIGLVPTKQTY 500



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 161/349 (46%), Gaps = 19/349 (5%)

Query: 42  EPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMR 101
           E +D    A  +E   L   D A+    ++  C+     D+  +        F  M+ M 
Sbjct: 198 EEADALLAAMWREGFSL---DSATCTVVVRAFCRQGRFRDVPGL--------FGRMVEM- 245

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
            +PP + ++      L K  +      + + +   GL P++YT+  LI+  CK+G     
Sbjct: 246 GNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLCKIGWTERA 305

Query: 162 FVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           F +  ++++S  + P+   +T +I G C E ++  A  L  ++   G  PN  TY+TLI+
Sbjct: 306 FRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTTLID 365

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR G    A  L  +M       G +  PN  TY  II G CK+G + +A ++     
Sbjct: 366 GHCRGGSFDRAFELMNKMKLE----GFL--PNIYTYNAIIGGFCKKGKIQQAYKVLRMAT 419

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            + + PD VTY  LI   C       A  L  +M +    PD+ T+  I+   C+  +M+
Sbjct: 420 SQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQQRQME 479

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ +L +  +  G+ P   T+++++ G+C  G+   A ++F  M   GC
Sbjct: 480 QSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGC 528



 Score =  127 bits (320), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 135/282 (47%), Gaps = 6/282 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             AF +F  ++      P + ++ ++ G   K         L  R+   GL P+  TY  
Sbjct: 303 ERAFRLFLKLVKSSSYKPNVHTYTVMIGGYCKEGKLARAEMLLGRMVEQGLAPNTNTYTT 362

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G     F ++ ++    F P+   + ++I G C + +I +A  +     + G
Sbjct: 363 LIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKVLRMATSQG 422

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+ LI   C+ GH   AL+LF +MA  +      C P+  TYTTII   C++ 
Sbjct: 423 LCPDKVTYTMLITEHCKQGHITYALDLFNQMAENS------CHPDIDTYTTIIAMYCQQR 476

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++++++LF +     + P   TY S+I G+C       A  +   M+  G  PD +T+ 
Sbjct: 477 QMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYG 536

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            ++  LCK  +++EA  L E M+ + + P   T  TL   +C
Sbjct: 537 ALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYC 578



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 112/243 (46%), Gaps = 6/243 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L     +   +D    L  ++   G  P++YTYN +I  FCK G++   + V
Sbjct: 355 PNTNTYTTLIDGHCRGGSFDRAFELMNKMKLEGFLPNIYTYNAIIGGFCKKGKIQQAYKV 414

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L         PD V +T LI   C +  I  A  LF ++    C P++ TY+T+I   C+
Sbjct: 415 LRMATSQGLCPDKVTYTMLITEHCKQGHITYALDLFNQMAENSCHPDIDTYTTIIAMYCQ 474

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 +  LF++  +     G+V  P   TYT++I G C+ G    A ++F +M     
Sbjct: 475 QRQMEQSQQLFDKCLS----IGLV--PTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGC 528

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +TY +LI G C  +   EA  L   M+D+ + P  VT   +  E C+  K   A  
Sbjct: 529 LPDPITYGALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVS 588

Query: 345 LLE 347
            L+
Sbjct: 589 FLD 591



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 101/208 (48%), Gaps = 11/208 (5%)

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLIN-GLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           +R+ EA  +  +L++ G    V T + ++  GL +  H   A   F+         G+  
Sbjct: 127 NRLREATDMLLELRSHGLPLVVETANWVLRVGLRQRHHFAHARQAFD---------GMGV 177

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+  ++  ++ G C+EG  ++A  L   M  +  + D  T   ++  FC    + +   
Sbjct: 178 RPDARSFRALVLGCCQEGRFEEADALLAAMWREGFSLDSATCTVVVRAFCRQGRFRDVPG 237

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   M++ G  P+VV +   +D LCK G + +A  +LE M+ +G+ PN  T ++L+DG C
Sbjct: 238 LFGRMVEMGNPPNVVNYTAWVDGLCKRGYVKQAFHVLEEMVGKGLKPNVYTHTSLIDGLC 297

Query: 370 LTGRVNHAKELFVSM-ESMGCKHTVFSY 396
             G    A  LF+ + +S   K  V +Y
Sbjct: 298 KIGWTERAFRLFLKLVKSSSYKPNVHTY 325



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 19/242 (7%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D+ +    + E CK   QG IT      A  +F+ M       P + ++  +     + +
Sbjct: 426 DKVTYTMLITEHCK---QGHITY-----ALDLFNQMAE-NSCHPDIDTYTTIIAMYCQQR 476

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
             +    LF +  S GL P   TY  +I  +C++G+ +    V  R+++    PD + + 
Sbjct: 477 QMEQSQQLFDKCLSIGLVPTKQTYTSMIAGYCRVGKSTSALKVFERMVQHGCLPDPITYG 536

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           +LI GLC ESR+ EA ALF  +      P  +T  TL    CR   T +A++  +     
Sbjct: 537 ALISGLCKESRLEEARALFETMLDKHMVPCDVTCVTLAYEYCRRDKTTIAVSFLD----- 591

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
               G+  +        ++  L     +D A      + DK+   D  TY S I+  CY 
Sbjct: 592 ----GLDKRQQAHAADALVRKLSAVDNLDAASLFLKNVLDKHYAVDHATYTSFINS-CYE 646

Query: 302 ND 303
           ++
Sbjct: 647 SN 648


>gi|15231438|ref|NP_187385.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75204605|sp|Q9SFV9.1|PP218_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g07290, mitochondrial; Flags: Precursor
 gi|6642636|gb|AAF20217.1|AC012395_4 hypothetical protein [Arabidopsis thaliana]
 gi|332641002|gb|AEE74523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 880

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 99/308 (32%), Positives = 149/308 (48%), Gaps = 9/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD M       P   S+++L   L +    +    L  ++   G  P   TY +L
Sbjct: 248 DALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQMGEKGCQPSTRTYTVL 307

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C  G +   F +   ++     P+   +T LI GLC + +I EA  +  K+     
Sbjct: 308 IKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRI 367

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+VITY+ LING C+ G  + A  L   M          CKPN  T+  +++GLC+ G 
Sbjct: 368 FPSVITYNALINGYCKDGRVVPAFELLTVMEKR------ACKPNVRTFNELMEGLCRVGK 421

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             KA  L  +M D  ++PD+V+YN LI G C     N A  LL  M    ++PD +TF  
Sbjct: 422 PYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFTA 481

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA---KELFVSME 385
           I++  CK GK D AS  L LM+ +G++ +  T +TL+DG C  G+   A    E  V M 
Sbjct: 482 IINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMR 541

Query: 386 SMGCKHTV 393
            +   H++
Sbjct: 542 ILTTPHSL 549



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/268 (33%), Positives = 137/268 (51%), Gaps = 7/268 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           ++R+ + G    +  Y  ++N  CK G      + + +IL+  F  D+   TSL+ G C 
Sbjct: 183 YRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKILKIGFVLDSHIGTSLLLGFCR 242

Query: 190 ESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              + +A  +F  + K   C PN ++YS LI+GLC  G    A  L ++M    G+ G  
Sbjct: 243 GLNLRDALKVFDVMSKEVTCAPNSVSYSILIHGLCEVGRLEEAFGLKDQM----GEKG-- 296

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C+P+T TYT +I  LC  G +DKA  LF +M  +   P+V TY  LI G C      EAN
Sbjct: 297 CQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTVLIDGLCRDGKIEEAN 356

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  +M+   + P V+T+N +++  CK+G++  A  LL +M  R   PN  TF+ LM+G 
Sbjct: 357 GVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGL 416

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G+   A  L   M   G    + SY
Sbjct: 417 CRVGKPYKAVHLLKRMLDNGLSPDIVSY 444



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 166/344 (48%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF + D M   +   P   ++ +L   L      D   +LF  +   G  P+++TY +
Sbjct: 283 EEAFGLKDQM-GEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVHTYTV 341

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G++     V  ++++    P  + + +LI G C + R++ A  L T ++   
Sbjct: 342 LIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVMEKRA 401

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CKPNV T++ L+ GLCR G    A++L + M + NG       P+ V+Y  +IDGLC+EG
Sbjct: 402 CKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLD-NG-----LSPDIVSYNVLIDGLCREG 455

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A +L   M   +I PD +T+ ++I+ FC     + A+  L  M+ +G+  D VT  
Sbjct: 456 HMNTAYKLLSSMNCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVTGT 515

Query: 328 VIMDELCKNGKMDEASRLLELMI-LR---------------------------------- 352
            ++D +CK GK  +A  +LE ++ +R                                  
Sbjct: 516 TLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKINKL 575

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+ P+  T++TL+DG   +G +  +  +   M+  GC   V+ Y
Sbjct: 576 GLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPY 619



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 164/344 (47%), Gaps = 42/344 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +FD M+  R   P + ++ +L   L +    +    + +++    +FP + TYN 
Sbjct: 318 DKAFNLFDEMIP-RGCKPNVHTYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNA 376

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN +CK GRV   F +L  + +    P+   F  L++GLC   +  +A  L  ++   G
Sbjct: 377 LINGYCKDGRVVPAFELLTVMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNG 436

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P++++Y+ LI+GLCR GH   A  L   M      F +  +P+ +T+T II+  CK+G
Sbjct: 437 LSPDIVSYNVLIDGLCREGHMNTAYKLLSSM----NCFDI--EPDCLTFTAIINAFCKQG 490

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL---------------- 311
             D A      M  K I+ D VT  +LI G C      +A  +L                
Sbjct: 491 KADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLN 550

Query: 312 --IEMMDQGVQ-----------------PDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
             ++M+ +G +                 P VVT+  ++D L ++G +  + R+LELM L 
Sbjct: 551 VILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGSFRILELMKLS 610

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G  PN   ++ +++G C  GRV  A++L  +M+  G      +Y
Sbjct: 611 GCLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 93/321 (28%), Positives = 153/321 (47%), Gaps = 38/321 (11%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + +FN L   L +       + L KR+   GL PD+ +YN+LI+  C+ G
Sbjct: 396 VMEKRACKPNVRTFNELMEGLCRVGKPYKAVHLLKRMLDNGLSPDIVSYNVLIDGLCREG 455

Query: 157 RVSHGFVVLGRILRSCF--TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            ++  + +L  +  +CF   PD + FT++I   C + +   A+A    +   G   + +T
Sbjct: 456 HMNTAYKLLSSM--NCFDIEPDCLTFTAIINAFCKQGKADVASAFLGLMLRKGISLDEVT 513

Query: 215 YSTLINGLCRTGHTIVALNLFE-------------------------------EMANGNG 243
            +TLI+G+C+ G T  AL + E                                M     
Sbjct: 514 GTTLIDGVCKVGKTRDALFILETLVKMRILTTPHSLNVILDMLSKGCKVKEELAMLGKIN 573

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           K G+V  P+ VTYTT++DGL + G +  +  +   MK     P+V  Y  +I+G C    
Sbjct: 574 KLGLV--PSVVTYTTLVDGLIRSGDITGSFRILELMKLSGCLPNVYPYTIIINGLCQFGR 631

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  LL  M D GV P+ VT+ V++     NGK+D A   +  M+ RG   N   +S+
Sbjct: 632 VEEAEKLLSAMQDSGVSPNHVTYTVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSS 691

Query: 364 LMDGFCLTGR-VNHAKELFVS 383
           L+ GF L+ + +++++E  VS
Sbjct: 692 LLQGFVLSQKGIDNSEESTVS 712



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 73/252 (28%), Positives = 122/252 (48%), Gaps = 40/252 (15%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV--------- 230
           ++SL+  L        A   + +++A G    +I Y T++N LC+ G+T           
Sbjct: 163 YSSLLMSLAKLDLGFLAYVTYRRMEADGFVVGMIDYRTIVNALCKNGYTEAAEMFMSKIL 222

Query: 231 --------------------------ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
                                     AL +F+ M+       V C PN+V+Y+ +I GLC
Sbjct: 223 KIGFVLDSHIGTSLLLGFCRGLNLRDALKVFDVMSK-----EVTCAPNSVSYSILIHGLC 277

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           + G +++A  L  QM +K   P   TY  LI   C     ++A  L  EM+ +G +P+V 
Sbjct: 278 EVGRLEEAFGLKDQMGEKGCQPSTRTYTVLIKALCDRGLIDKAFNLFDEMIPRGCKPNVH 337

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+ V++D LC++GK++EA+ +   M+   + P+  T++ L++G+C  GRV  A EL   M
Sbjct: 338 TYTVLIDGLCRDGKIEEANGVCRKMVKDRIFPSVITYNALINGYCKDGRVVPAFELLTVM 397

Query: 385 ESMGCKHTVFSY 396
           E   CK  V ++
Sbjct: 398 EKRACKPNVRTF 409



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 155/373 (41%), Gaps = 100/373 (26%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +   ML+   SP  + S+N+L   L +  H +T   L   +N   + PD  T+ 
Sbjct: 422 PYKAVHLLKRMLDNGLSPD-IVSYNVLIDGLCREGHMNTAYKLLSSMNCFDIEPDCLTFT 480

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC---------------AES 191
            +IN FCK G+       LG +LR   + D V  T+LI G+C                + 
Sbjct: 481 AIINAFCKQGKADVASAFLGLMLRKGISLDEVTGTTLIDGVCKVGKTRDALFILETLVKM 540

Query: 192 RIM--------------------EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
           RI+                    E  A+  K+   G  P+V+TY+TL++GL R+G    +
Sbjct: 541 RILTTPHSLNVILDMLSKGCKVKEELAMLGKINKLGLVPSVVTYTTLVDGLIRSGDITGS 600

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             + E M          C PN   YT II+GLC+ G V++A++L   M+D  ++P+ VTY
Sbjct: 601 FRILELMKLSG------CLPNVYPYTIIINGLCQFGRVEEAEKLLSAMQDSGVSPNHVTY 654

Query: 292 -----------------------------------NSLIHGFCYANDW------------ 304
                                              +SL+ GF  +               
Sbjct: 655 TVMVKGYVNNGKLDRALETVRAMVERGYELNDRIYSSLLQGFVLSQKGIDNSEESTVSDI 714

Query: 305 ----NEANCL--LIEMMDQ--GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
                +  C+  LI +++Q  G    +  F  ++  LCK G+ DE++ L++ ++ RGV  
Sbjct: 715 ALRETDPECINELISVVEQLGGCISGLCIF--LVTRLCKEGRTDESNDLVQNVLERGVFL 772

Query: 357 NTSTFSTLMDGFC 369
             +    +M+ +C
Sbjct: 773 EKA-MDIIMESYC 784


>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
 gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
          Length = 454

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 144/292 (49%), Gaps = 12/292 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+  L   L +T   D   S    +    L PD++TYN++I+  CK  R+S     
Sbjct: 8   PNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAI-- 65

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
                 +   PD V + +L+ GLC   R+ +A +LF  ++  G  P+ +TY+TLI+  C+
Sbjct: 66  --EFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCK 123

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L + MA+        C P   +Y +II+GLCK   VD+A +LF +MK    
Sbjct: 124 MCQFETAYGLLQLMASRK------CSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGC 177

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD VTYN+LIHG C     +EA  LL  M++   QPD +TF  +++ LC   ++ EA  
Sbjct: 178 KPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFV 237

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L + M  +G  P+  T + L+   C+  ++  A  L V      C   V  Y
Sbjct: 238 LFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPA--LSVVRNYPACPEAVILY 287



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 153/312 (49%), Gaps = 35/312 (11%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + S+  +   L K +  D    LF+ +   G  PD  TYN LI+  C   
Sbjct: 136 LMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKLAGCKPDRVTYNTLIHGLCVKQ 195

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R+     +L  ++ + F PD + FT+LI+GLC   RI EA  LF  +   GC P+++T++
Sbjct: 196 RLHEAKDLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHT 255

Query: 217 TLINGLCRTGHTIVALN-----------------LFEEMANGNG------------KFGV 247
            L++ LC       AL+                 +F E+    G            + GV
Sbjct: 256 VLVSKLCIRRKLRPALSVVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGV 315

Query: 248 VCKPNTVTYTTIIDGL--CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
              PN VTYT    GL   KEG   +A   F +M ++ I PD+V YN L+ GFC AN  +
Sbjct: 316 A--PNVVTYTAFFKGLGDWKEGM--RAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLD 371

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            A  ++  M   G+ P++VT+N ++   C+ GK++    LL  M+ RG  P+ +T+STL+
Sbjct: 372 MAEKMVRYMDQSGLPPNIVTYNTLVGHHCRKGKVEAIGELLHTMVSRGRQPDVATWSTLV 431

Query: 366 DGFCLTGRVNHA 377
            G    G+V+ A
Sbjct: 432 AGLFRVGQVDAA 443



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 153/360 (42%), Gaps = 78/360 (21%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N++   L K +     +  F+ +      PD+ TYN L+   CK GRV+    +
Sbjct: 43  PDVFTYNVVIDTLCKARRISRAIEFFETMPE----PDVVTYNTLLGGLCKNGRVAQACSL 98

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +  +  TP  V +T+LI   C   +   A  L   + +  C P V +Y ++INGLC+
Sbjct: 99  FGSMEGAGITPSDVTYTTLIDVFCKMCQFETAYGLLQLMASRKCSPTVYSYCSIINGLCK 158

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  LFEEM          CKP+ VTY T+I GLC +  + +AK+L   M + + 
Sbjct: 159 NRKVDQAYQLFEEMKLAG------CKPDRVTYNTLIHGLCVKQRLHEAKDLLTVMVENSF 212

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM----- 339
            PD +T+ +LI G C  +   EA  L   M  QG  PD+VT  V++ +LC   K+     
Sbjct: 213 QPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKLCIRRKLRPALS 272

Query: 340 ----------------------------DEASRLLELMILRGVNPNTSTFST-------- 363
                                       D A+RLL+ M  RGV PN  T++         
Sbjct: 273 VVRNYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAPNVVTYTAFFKGLGDW 332

Query: 364 ---------------------------LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                                      L+DGFC   R++ A+++   M+  G    + +Y
Sbjct: 333 KEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMAEKMVRYMDQSGLPPNIVTY 392



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/152 (36%), Positives = 82/152 (53%), Gaps = 4/152 (2%)

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           F   CKPN ++Y  ++  LC+ G +DKA     +M  + + PDV TYN +I   C A   
Sbjct: 2   FSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRI 61

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           + A    IE  +   +PDVVT+N ++  LCKNG++ +A  L   M   G+ P+  T++TL
Sbjct: 62  SRA----IEFFETMPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTL 117

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +D FC   +   A  L   M S  C  TV+SY
Sbjct: 118 IDVFCKMCQFETAYGLLQLMASRKCSPTVYSY 149



 Score = 42.7 bits (99), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 18/71 (25%), Positives = 39/71 (54%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           +  Q  +P+ +++  ++  LC+ GK+D+A   +  M    + P+  T++ ++D  C   R
Sbjct: 1   IFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARR 60

Query: 374 VNHAKELFVSM 384
           ++ A E F +M
Sbjct: 61  ISRAIEFFETM 71


>gi|225464138|ref|XP_002265372.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46100
           [Vitis vinifera]
 gi|296087974|emb|CBI35257.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 160/308 (51%), Gaps = 16/308 (5%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAK-TKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           A   + YM  M   PP + S N+L   L K +   D  L +F+ + + G  PD YTY  L
Sbjct: 139 ALRFYRYMREM-GIPPSVASLNVLIKALCKNSGTMDAALRIFREMPNRGCPPDSYTYGTL 197

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  C++G++     +   +     +P  V +TSLI GLC    +  A  L  ++ + G 
Sbjct: 198 INGLCRLGKIGEAKELFKEMETKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGI 257

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPNV TYS+L++G C++G +  AL L + M +          PN +TY+T++ GLCKEG 
Sbjct: 258 KPNVFTYSSLMDGHCKSGCSSRALELLDMMVSRRH------LPNMITYSTLVHGLCKEGK 311

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-- 326
           + +A E+  +MK + + PD   Y  +I GFC    ++EA   L EM+  G+ P+ +T+  
Sbjct: 312 LQEAVEILDRMKLQGLRPDAGLYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSL 371

Query: 327 -----NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
                N+++  LC     + A +L   M  RG++ +  TF +L++ FC  G ++ A  L 
Sbjct: 372 HVRIHNIVVQGLCTEHP-NRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLV 430

Query: 382 VSMESMGC 389
             M   GC
Sbjct: 431 DEMVLDGC 438



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/311 (31%), Positives = 156/311 (50%), Gaps = 18/311 (5%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +F  M      P    S+  +F  L         L  ++ +   G+ P + + N
Sbjct: 101 PLDAVRVFRKMKEYECEPSQ-KSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLN 159

Query: 147 ILINCFCKMGRVSHGFVVLGRIL--RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           +LI   CK        + + R +  R C  PD+  + +LI GLC   +I EA  LF +++
Sbjct: 160 VLIKALCKNSGTMDAALRIFREMPNRGC-PPDSYTYGTLINGLCRLGKIGEAKELFKEME 218

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
              C P V+TY++LI+GLC++     A+ L EEMA+         KPN  TY++++DG C
Sbjct: 219 TKACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKG------IKPNVFTYSSLMDGHC 272

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G   +A EL   M  +   P+++TY++L+HG C      EA  +L  M  QG++PD  
Sbjct: 273 KSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLRPDAG 332

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNHA 377
            +  I+   C   K  EA+  L+ M+L G++PN  T+S        ++ G C T   N A
Sbjct: 333 LYGKIISGFCDICKFHEAANFLDEMVLGGISPNRLTWSLHVRIHNIVVQGLC-TEHPNRA 391

Query: 378 KELFVSMESMG 388
            +L++SM + G
Sbjct: 392 FQLYLSMRTRG 402



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 150/288 (52%), Gaps = 17/288 (5%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +F+L+   L    H+     L  R+          T +I ++     GRV H  +   R+
Sbjct: 52  TFSLMISRLVSANHFRLAEELLCRMKEEKCN---ITEDIFLSICRAYGRV-HKPLDAVRV 107

Query: 169 LR-----SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            R      C  P   ++ ++   L  E+++  A   +  ++  G  P+V + + LI  LC
Sbjct: 108 FRKMKEYEC-EPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALC 166

Query: 224 RTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           +   T+  AL +F EM N        C P++ TY T+I+GLC+ G + +AKELF +M+ K
Sbjct: 167 KNSGTMDAALRIFREMPNRG------CPPDSYTYGTLINGLCRLGKIGEAKELFKEMETK 220

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
             +P VVTY SLIHG C + D + A  LL EM  +G++P+V T++ +MD  CK+G    A
Sbjct: 221 ACSPTVVTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTYSSLMDGHCKSGCSSRA 280

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             LL++M+ R   PN  T+STL+ G C  G++  A E+   M+  G +
Sbjct: 281 LELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGLR 328



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 148/281 (52%), Gaps = 18/281 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M     SP  +T  +L+ G L ++K  D+ + L + + S G+ P+++TY+ L
Sbjct: 209 EAKELFKEMETKACSPTVVTYTSLIHG-LCQSKDLDSAIRLLEEMASKGIKPNVFTYSSL 267

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  CK G  S    +L  ++     P+ + +++L+ GLC E ++ EA  +  ++K  G 
Sbjct: 268 MDGHCKSGCSSRALELLDMMVSRRHLPNMITYSTLVHGLCKEGKLQEAVEILDRMKLQGL 327

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT-------TIID 261
           +P+   Y  +I+G C       A N  +EM  G         PN +T++        ++ 
Sbjct: 328 RPDAGLYGKIISGFCDICKFHEAANFLDEMVLGG------ISPNRLTWSLHVRIHNIVVQ 381

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC E   ++A +L+L M+ + I+ D  T++SL++ FC   D ++A  L+ EM+  G  P
Sbjct: 382 GLCTE-HPNRAFQLYLSMRTRGISIDAKTFDSLVNYFCNKGDLHKAAHLVDEMVLDGCIP 440

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMIL---RGVNPNTS 359
           D VT+N ++       K+ E++ L+++ ++   R + P+ +
Sbjct: 441 DEVTWNAVVCAFWDRRKVRESAELVQVELMVEHRKMGPDNT 481



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/218 (25%), Positives = 99/218 (45%), Gaps = 7/218 (3%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           F+ +I  L + +    A  L  ++K   C      + ++     R    + A+ +F +M 
Sbjct: 53  FSLMISRLVSANHFRLAEELLCRMKEEKCNITEDIFLSICRAYGRVHKPLDAVRVFRKMK 112

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C+P+  +Y T+   L  E  +  A   +  M++  I P V + N LI   C
Sbjct: 113 EYE------CEPSQKSYITVFAILVGENQLKLALRFYRYMREMGIPPSVASLNVLIKALC 166

Query: 300 Y-ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             +   + A  +  EM ++G  PD  T+  +++ LC+ GK+ EA  L + M  +  +P  
Sbjct: 167 KNSGTMDAALRIFREMPNRGCPPDSYTYGTLINGLCRLGKIGEAKELFKEMETKACSPTV 226

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+++L+ G C +  ++ A  L   M S G K  VF+Y
Sbjct: 227 VTYTSLIHGLCQSKDLDSAIRLLEEMASKGIKPNVFTY 264


>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
          Length = 864

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 6/310 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA CIFD M+   P P  ++   +L G    T      V ++F  + + G+ P+ + +N
Sbjct: 347 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 406

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILIN + + G +    ++   +      PD V F ++I  LC   R+ +A   F  +   
Sbjct: 407 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 466

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+   Y  LI G C  G  + A  L  EM N +     +  P    +++II+ LCKE
Sbjct: 467 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKE 521

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V + K++   M      P+VVT+NSL+ G+C   +  EA  LL  M   G++P+   +
Sbjct: 522 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 581

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D+A  +   M+ +GV P +  +S ++ G     R   AK++F  M  
Sbjct: 582 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 641

Query: 387 MGCKHTVFSY 396
            G   ++ +Y
Sbjct: 642 SGTTVSIHTY 651



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 146/277 (52%), Gaps = 18/277 (6%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTGLF----PDLYTYNILINC 151
           +P P  + N +   LA+              + LFKR++         P ++TYNILI+C
Sbjct: 106 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 165

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  LF ++   G  P 
Sbjct: 166 YRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPK 224

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           ++  +++I  LC+      A ++ ++M +          P+  TY+ IIDGLCK   +DK
Sbjct: 225 ILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLIIDGLCKSKAMDK 278

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A+ +  QM +    P+ +TYNSLIHG+  +  WNE+  +  +M   GV P V   N  + 
Sbjct: 279 AERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIH 338

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L K+G+ +EA  + + M+L+G  P+  ++ST++ G+
Sbjct: 339 ALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 375



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 43/340 (12%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF+ ML  +   P    FN+L    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 389 IFNLMLT-KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 447

Query: 153 CKMGRVS---HGF------------VVLGRILRSCFT---------------------PD 176
           C++GR+    H F             V G +++ C                       P 
Sbjct: 448 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 507

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F+S+I  LC E R+ E   +   +   G +PNV+T+++L+ G C  G+   A  L +
Sbjct: 508 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 567

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            MA+      +  +PN   Y T++DG CK G +D A  +F  M  K + P  V Y+ ++H
Sbjct: 568 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 621

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A     A  +  EM++ G    + T+ V++  LC+N   DEA+ LLE +    V  
Sbjct: 622 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 681

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  TF+ ++      GR   AKELF ++ + G    + +Y
Sbjct: 682 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTY 721



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 149/301 (49%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++M+++   P       L+ GC    +       + + +N     P +  ++ 
Sbjct: 454 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 513

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK GRV+ G  ++  ++++   P+ V F SL++G C    + EA AL   + + G
Sbjct: 514 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 573

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN   Y TL++G C+ G    AL +F +M +         KP +V Y+ I+ GL +  
Sbjct: 574 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG------VKPTSVLYSIILHGLFQAR 627

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AK++F +M +      + TY  ++ G C  N  +EAN LL ++    V+ D++TFN
Sbjct: 628 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 687

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  + K G+  EA  L + +   G+ PN  T+S ++           A  LF+S+E  
Sbjct: 688 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKS 747

Query: 388 G 388
           G
Sbjct: 748 G 748



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 163/350 (46%), Gaps = 45/350 (12%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           S+  GD  A+   E F   D     R SPP + ++N+L  C  +    D  L++  RL  
Sbjct: 126 SAACGDAPALAI-ELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK 184

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            GL PD ++Y+ LI  F K G V     +   ++     P  +   S+IK LC    + +
Sbjct: 185 NGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDK 243

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A ++  K+   G  P++ TYS +I+GLC++     A  + E+M           +PN++T
Sbjct: 244 AESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAG------TRPNSIT 297

Query: 256 YTTIIDG-----------------------------------LCKEGFVDKAKELFLQMK 280
           Y ++I G                                   L K G  ++AK +F  M 
Sbjct: 298 YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMV 357

Query: 281 DKNINPDVVTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
            K   PD+++Y++++HG+  A D    + + +   M+ +G+ P+   FN++++   + G 
Sbjct: 358 LKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGM 417

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           MD+A  + E M  +G+ P+T TF+T++   C  GR++ A   F  M  +G
Sbjct: 418 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 467



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 114/203 (56%), Gaps = 13/203 (6%)

Query: 196 AAALFTKLKAFGCK----PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCK 250
           A  LF ++  + C     P + TY+ LI+   R     + L +   +  NG G       
Sbjct: 136 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLG------- 188

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+  +Y+ +I G  K+G VDKA  LFL+M ++ + P ++  NS+I   C   + ++A  +
Sbjct: 189 PDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESI 247

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           + +M+D G+ PD+ T+++I+D LCK+  MD+A R+LE M+  G  PN+ T+++L+ G+ +
Sbjct: 248 VQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSI 307

Query: 371 TGRVNHAKELFVSMESMGCKHTV 393
           +G  N +  +F  M S G   TV
Sbjct: 308 SGMWNESVRVFKQMSSCGVIPTV 330



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 7/282 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+     P  +T FN L        + +   +L   + S G+ P+ Y Y  L++ +
Sbjct: 530 IMDMMVQTGQRPNVVT-FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 588

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   ++
Sbjct: 589 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 648

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  ++ GLCR   T  A  L E++   N KF ++      T+  +I  + K G   +A
Sbjct: 649 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII------TFNIVISAMFKVGRRQEA 702

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           KELF  +    + P++ TY+ +I        + EA+ L I +   G   D    N I+  
Sbjct: 703 KELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRM 762

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           L    ++ +AS  L ++    +    ST S L   F   G +
Sbjct: 763 LLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGMI 804


>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
          Length = 660

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 150/286 (52%), Gaps = 8/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFNL+   + K    D  + +F+ +      PD++TY  L++  CK  R+    ++
Sbjct: 186 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 245

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  + +  CF P +V F  LI GLC +  ++    L   +   GC PN +TY+T+INGLC
Sbjct: 246 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A++L + M          C PN VTY T+I+GL K+G       L   ++++ 
Sbjct: 305 LKGKLDKAVSLLDRMVASK------CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 358

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            + +   Y++LI G        EA  L  +M+++G QP++V ++ ++D LC+ GK+DEA 
Sbjct: 359 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 418

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            +L  M+ +G  PN  T+S+L+ GF  TG    A  ++  M    C
Sbjct: 419 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNC 464



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK--RLNSTGLFPD 141
           A  P +A  +F  M++       + SFN +   + +   +   L  ++      T + P+
Sbjct: 128 AHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPN 187

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + ++N++I   CK+G V     V   +      PD   + +L+ GLC E RI EA  L  
Sbjct: 188 VLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLD 247

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           +++  GC P+ +T++ LINGLC+ G  +    L + M      F   C PN VTY TII+
Sbjct: 248 EMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM------FLKGCVPNEVTYNTIIN 301

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC +G +DKA  L  +M      P+ VTY +LI+G        +   LL  + ++G   
Sbjct: 302 GLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHA 361

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +   ++ ++  L K  K +EA  L + M+ +G  PN   +S L+DG C  G+++ AKE+ 
Sbjct: 362 NEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEIL 421

Query: 382 VSMESMGCKHTVFSY 396
             M + GC    F+Y
Sbjct: 422 CEMVNKGCTPNAFTY 436



 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 154/297 (51%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M  +    P   +FN+L   L K      V  L   +   G  P+  TYN 
Sbjct: 240 DEAVLLLDEM-QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 298

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  C  G++     +L R++ S   P+ V + +LI GL  + R ++   L + L+  G
Sbjct: 299 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 358

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N   YSTLI+GL +   +  A+ L+++M          C+PN V Y+ +IDGLC+EG
Sbjct: 359 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG------CQPNIVVYSALIDGLCREG 412

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+AKE+  +M +K   P+  TY+SLI GF    +  +A  +  EM      P+ + ++
Sbjct: 413 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 472

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           V++  LC++GK+ EA  +   M+ RG+ P+   +S+++ G C  G V    +LF  M
Sbjct: 473 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 529



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 14/313 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+  +T      + D M  ++   P   ++N +   L      D  +SL  R+ ++  
Sbjct: 271 KGDMVRVTK-----LVDNMF-LKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKC 324

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TY  LIN   K GR   G  +L  +       +  A+++LI GL  E +  EA  
Sbjct: 325 VPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMG 384

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L+ K+   GC+PN++ YS LI+GLCR G    A  +  EM N        C PN  TY++
Sbjct: 385 LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG------CTPNAFTYSS 438

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I G  K G   KA  ++ +M   N  P+ + Y+ LIHG C      EA  +   M+ +G
Sbjct: 439 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 498

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFSTLMDGFCLTGRVNH 376
           ++PDVV ++ ++  LC  G ++   +L   M+ +  +  P+  T++ L+   C    ++H
Sbjct: 499 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 558

Query: 377 AKELFVSMESMGC 389
           A +L  SM   GC
Sbjct: 559 AIDLLNSMLDRGC 571



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 154/312 (49%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  M   +  P   T   L+ G L K    D  + L   +   G FP   T+N+
Sbjct: 205 DRAIEVFREMAIQKCEPDVFTYCTLMDG-LCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 263

Query: 148 LINCFCKMG---RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LIN  CK G   RV+   +V    L+ C  P+ V + ++I GLC + ++ +A +L  ++ 
Sbjct: 264 LINGLCKKGDMVRVTK--LVDNMFLKGC-VPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 320

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A  C PN +TY TLINGL + G ++  ++L   +             N   Y+T+I GL 
Sbjct: 321 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH------ANEYAYSTLISGLF 374

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KE   ++A  L+ +M +K   P++V Y++LI G C     +EA  +L EM+++G  P+  
Sbjct: 375 KEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAF 434

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ ++    K G   +A R+ + M      PN   +S L+ G C  G++  A  ++  M
Sbjct: 435 TYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHM 494

Query: 385 ESMGCKHTVFSY 396
              G +  V +Y
Sbjct: 495 LGRGLRPDVVAY 506



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 29/290 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ L   L K +  +  + L+K++   G  P++  Y+ LI+  C+ G++     +L  +
Sbjct: 365 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 424

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +    TP+A  ++SLIKG        +A  ++ ++    C PN I YS LI+GLC  G  
Sbjct: 425 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 484

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNINP 286
             A+ ++  M       G   +P+ V Y+++I GLC  G V+   +LF +M  ++ +  P
Sbjct: 485 REAMMMWTHM------LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQP 538

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV-----------------I 329
           DVVTYN L+   C  N  + A  LL  M+D+G  PD++T N+                  
Sbjct: 539 DVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREF 598

Query: 330 MDELC----KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           +DEL     K  ++  A++++E+M+ + + PN ST+  ++   C   +V 
Sbjct: 599 LDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQ 648


>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
 gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
          Length = 844

 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 6/310 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA CIFD M+   P P  ++   +L G    T      V ++F  + + G+ P+ + +N
Sbjct: 367 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 426

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILIN + + G +    ++   +      PD V F ++I  LC   R+ +A   F  +   
Sbjct: 427 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 486

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+   Y  LI G C  G  + A  L  EM N +     +  P    +++II+ LCKE
Sbjct: 487 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKE 541

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V + K++   M      P+VVT+NSL+ G+C   +  EA  LL  M   G++P+   +
Sbjct: 542 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 601

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D+A  +   M+ +GV P +  +S ++ G     R   AK++F  M  
Sbjct: 602 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 661

Query: 387 MGCKHTVFSY 396
            G   ++ +Y
Sbjct: 662 SGTTVSIHTY 671



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/277 (29%), Positives = 146/277 (52%), Gaps = 18/277 (6%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTGLF----PDLYTYNILINC 151
           +P P  + N +   LA+              + LFKR++         P ++TYNILI+C
Sbjct: 126 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 185

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  LF ++   G  P 
Sbjct: 186 YRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPK 244

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           ++  +++I  LC+      A ++ ++M +          P+  TY+ IIDGLCK   +DK
Sbjct: 245 ILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLIIDGLCKSKAMDK 298

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A+ +  QM +    P+ +TYNSLIHG+  +  WNE+  +  +M   GV P V   N  + 
Sbjct: 299 AERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIH 358

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L K+G+ +EA  + + M+L+G  P+  ++ST++ G+
Sbjct: 359 ALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 395



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 43/340 (12%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF+ ML  +   P    FN+L    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 409 IFNLMLT-KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 467

Query: 153 CKMGRVS---HGF------------VVLGRILRSCFT---------------------PD 176
           C++GR+    H F             V G +++ C                       P 
Sbjct: 468 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 527

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F+S+I  LC E R+ E   +   +   G +PNV+T+++L+ G C  G+   A  L +
Sbjct: 528 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 587

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            MA+      +  +PN   Y T++DG CK G +D A  +F  M  K + P  V Y+ ++H
Sbjct: 588 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 641

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A     A  +  EM++ G    + T+ V++  LC+N   DEA+ LLE +    V  
Sbjct: 642 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 701

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  TF+ ++      GR   AKELF ++ + G    + +Y
Sbjct: 702 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTY 741



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++M+++   P       L+ GC    +       + + +N     P +  ++ 
Sbjct: 474 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 533

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK GRV+ G  ++  ++++   P+ V F SL++G C    + EA AL   + + G
Sbjct: 534 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 593

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN   Y TL++G C+ G    AL +F +M +     GV  KP +V Y+ I+ GL +  
Sbjct: 594 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSIILHGLFQAR 647

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AK++F +M +      + TY  ++ G C  N  +EAN LL ++    V+ D++TFN
Sbjct: 648 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 707

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  + K G+  EA  L + +   G+ PN  T+S ++           A  LF+S+E  
Sbjct: 708 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKS 767

Query: 388 G 388
           G
Sbjct: 768 G 768



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 163/350 (46%), Gaps = 45/350 (12%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           S+  GD  A+   E F   D     R SPP + ++N+L  C  +    D  L++  RL  
Sbjct: 146 SAACGDAPALAI-ELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK 204

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            GL PD ++Y+ LI  F K G V     +   ++     P  +   S+IK LC    + +
Sbjct: 205 NGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDK 263

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A ++  K+   G  P++ TYS +I+GLC++     A  + E+M           +PN++T
Sbjct: 264 AESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAG------TRPNSIT 317

Query: 256 YTTIIDG-----------------------------------LCKEGFVDKAKELFLQMK 280
           Y ++I G                                   L K G  ++AK +F  M 
Sbjct: 318 YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMV 377

Query: 281 DKNINPDVVTYNSLIHGFCYAND--WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
            K   PD+++Y++++HG+  A D    + + +   M+ +G+ P+   FN++++   + G 
Sbjct: 378 LKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFNILINAYARCGM 437

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           MD+A  + E M  +G+ P+T TF+T++   C  GR++ A   F  M  +G
Sbjct: 438 MDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 487



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 114/203 (56%), Gaps = 13/203 (6%)

Query: 196 AAALFTKLKAFGCK----PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCK 250
           A  LF ++  + C     P + TY+ LI+   R     + L +   +  NG G       
Sbjct: 156 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLG------- 208

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+  +Y+ +I G  K+G VDKA  LFL+M ++ + P ++  NS+I   C   + ++A  +
Sbjct: 209 PDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESI 267

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           + +M+D G+ PD+ T+++I+D LCK+  MD+A R+LE M+  G  PN+ T+++L+ G+ +
Sbjct: 268 VQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSI 327

Query: 371 TGRVNHAKELFVSMESMGCKHTV 393
           +G  N +  +F  M S G   TV
Sbjct: 328 SGMWNESVRVFKQMSSCGVIPTV 350



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 7/281 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+     P  +T FN L        + +   +L   + S G+ P+ Y Y  L++ +
Sbjct: 550 IMDMMVQTGQRPNVVT-FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 608

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   ++
Sbjct: 609 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 668

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  ++ GLCR   T  A  L E++   N KF ++      T+  +I  + K G   +A
Sbjct: 669 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII------TFNIVISAMFKVGRRQEA 722

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           KELF  +    + P++ TY+ +I        + EA+ L I +   G   D    N I+  
Sbjct: 723 KELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRM 782

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           L    ++ +AS  L ++    +    ST S L   F   G+
Sbjct: 783 LLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 823


>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            +A+ +F  M N+  +P   T FN+L     K+     +  L+K + S    PD  TYNI+
Sbjct: 806  KAWDLFKDMKNVGCAPDAFT-FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            I+   K   +         ++ S F P    +  LI GL    R+ EA  LF ++  +GC
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            KPN   ++ LING  + G T  A  LF+ M N         +P+  +YT ++D LC  G 
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFKRMVNEG------IRPDLKSYTILVDCLCLAGR 978

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            VD+A   F ++K   ++PD + YN +I+G   +    EA  L  EM ++G+ PD+ T+N 
Sbjct: 979  VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNS 1038

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +M  L   G +++A R+ E + L G+ P+  T++ L+ G+ L+    HA  ++ +M   G
Sbjct: 1039 LMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDG 1098

Query: 389  CKHTVFSY 396
            C   + +Y
Sbjct: 1099 CNPNIGTY 1106



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 152/306 (49%), Gaps = 8/306 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF  FD M   +   P L ++N L   L +    +  L L   + S G+ P  YTYNI
Sbjct: 384 DEAFATFDVM-RKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNI 442

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+ F K G          ++      P+ VA  + +  L    R+ EA  +F  L+  G
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+ ++    + G    A+NL  EM   NG     C+P+ +   ++ID L K G
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR-NG-----CEPDVIVVNSLIDSLYKAG 556

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A ++F +MKD  ++P VVTYN+L+ G        +A  L   M+++   P+ ++FN
Sbjct: 557 RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFN 616

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ES 386
            ++D  CKN +++ A ++   M +    P+  T++T++ G     +VNHA   F  + +S
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS 676

Query: 387 MGCKHT 392
           M   H 
Sbjct: 677 MHPDHV 682



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F +L   L K + +D   + F  +   G+ P+L+TYN LI    + GR+     +
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG +      P A  +   I          +A   F K+KA G  PN++  +  +  L  
Sbjct: 425 LGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F    NG  + G+   P++VTY  ++    K G VD+A  L  +M     
Sbjct: 485 MGRLREAKTMF----NGLRENGLA--PDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+  NSLI     A   +EA  +   M D  + P VVT+N ++  L K G++ +A  
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E MI +  +PNT +F+TL+D FC    V  A ++F  M  M CK  V +Y
Sbjct: 599 LFESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++  +F  L+       + ++  ++   G   + Y+YN LI+   + G       V  
Sbjct: 157 LDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYR 216

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R++     P    +++L+  L  +        L  +++  G +PNV T++  I  L R G
Sbjct: 217 RMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAG 276

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  +F  M +        C P+ VTYT +ID LC  G ++ AKELF++MK     P
Sbjct: 277 KIDEAYEIFRRMDDEG------CGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D V Y +L+  F    D +       +M   G  PDVVTF +++D LCK    DEA    
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++M  +G+ PN  T++TL+ G    GR+  A +L  +MES+G + T ++Y
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTY 440



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 142/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L K +  + V+ L K +   GL P++YT+ I I    + G++   + +
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+      PD V +T LI  LC   ++  A  LF K+KA G KP+ + Y TL++    
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G     L+ F+E  +     G +  P+ VT+T ++D LCK    D+A   F  M+ + I
Sbjct: 345 FGD----LDTFKEFWSQMEADGYM--PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGI 398

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ TYN+LI G   A    +A  LL  M   GVQP   T+N+ +D   K+G+  +A  
Sbjct: 399 LPNLHTYNTLICGLLRAGRIEDALKLLGTMESVGVQPTAYTYNIFIDYFGKSGETGKAVE 458

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             E M  +G+ PN    +  +      GR+  AK +F  +   G      +Y
Sbjct: 459 TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY 510



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N L   L ++      L +++R+ S GL P L TY+ L+    K        V+L  +
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+   FT  I+ L    +I EA  +F ++   GC P+++TY+ LI+ LC  G  
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 229 IVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
             A  LF +M ANG+       KP+ V Y T++D     G +D  KE + QM+     PD
Sbjct: 314 ENAKELFVKMKANGH-------KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPD 366

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVT+  L+   C A D++EA      M  QG+ P++ T+N ++  L + G++++A +LL 
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLG 426

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M   GV P   T++  +D F  +G    A E F  M++ G
Sbjct: 427 TMESVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKMKAKG 467



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 138/329 (41%), Gaps = 44/329 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N L   L K    D    +F R+    L P + TYN L++   K GRV     +
Sbjct: 540 PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    +P+ ++F +L+   C    +  A  +F+K+    CKP+V+TY+T+I GL +
Sbjct: 600 FESMIEKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIK 659

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK----AKELFLQMK 280
                 A   F ++            P+ VT  T++ GL K G +      A++   Q++
Sbjct: 660 ENKVNHAFWFFHQLKKS-------MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 281 -----------------DKNINPDVVTYNSLI-HGFCYANDW----------NEANCLLI 312
                            +  ++  ++    L+ +G C  + +          ++      
Sbjct: 713 FRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAY 772

Query: 313 EMMDQ-----GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           ++ D+     G+ P + ++N ++ EL +    ++A  L + M   G  P+  TF+ L+  
Sbjct: 773 QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +G++    EL+  M S  CK    +Y
Sbjct: 833 HGKSGKITELFELYKEMISRRCKPDAITY 861



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P   ++N +   L K++  +  L+L+  + + G+ PDLYTYN L+      G V     +
Sbjct: 996  PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               +  +   PD   + +LI+G         A  ++  +   GC PN+ TY+ L N
Sbjct: 1056 YEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111


>gi|326510773|dbj|BAJ91734.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 711

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 98/292 (33%), Positives = 153/292 (52%), Gaps = 9/292 (3%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           MR +PP + ++ ++     + +  +  L+ F RL  TGL  D    N ++ C C   R  
Sbjct: 1   MRVAPPTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTD 60

Query: 160 HGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFG-CKPNVITYS 216
               V+L R+      PDA ++  ++K LC ++R  +A  L   + K  G C P+V+TY+
Sbjct: 61  DAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEGVCSPDVVTYN 120

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I+G  + G    A NL+ EM     + G V  P+ VT+ +II+ LCK   VD A+ L 
Sbjct: 121 TVIHGFFKEGKIGKACNLYHEMM----QQGFV--PDVVTHNSIINALCKARAVDNAELLL 174

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            QM D  + P+ VTY S+IHG+     W EA  +  EM  +G+ PD+V++N  MD LCK+
Sbjct: 175 RQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKH 234

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           G+  EA+ +   M  +G  PN  T+  L+ G+   G        F +M+  G
Sbjct: 235 GRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMSFFNTMKGDG 286



 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 139/258 (53%), Gaps = 5/258 (1%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-A 198
           P ++TY +++N  C+  R   G    GR+LR+    D  A  +++K LC   R  +A   
Sbjct: 6   PTIFTYGVVMNGCCRARRPELGLAFFGRLLRTGLKADKTAANTVLKCLCCTKRTDDAVKV 65

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L  ++   GC P+  +Y+ ++  LC    +  AL+L   MA   G    VC P+ VTY T
Sbjct: 66  LLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLRMMAKEEG----VCSPDVVTYNT 121

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I G  KEG + KA  L+ +M  +   PDVVT+NS+I+  C A   + A  LL +M+D G
Sbjct: 122 VIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCKARAVDNAELLLRQMVDNG 181

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V P+ VT+  ++      G+ +EA+++   M  RG+ P+  ++++ MD  C  GR   A 
Sbjct: 182 VPPNKVTYTSMIHGYSTLGRWEEATKMFREMTGRGLIPDIVSWNSFMDSLCKHGRSKEAA 241

Query: 379 ELFVSMESMGCKHTVFSY 396
           E+F SM + G +  + +Y
Sbjct: 242 EIFYSMAAKGHRPNIVTY 259



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 161/337 (47%), Gaps = 16/337 (4%)

Query: 57  RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           R  + D  S   F+   CK             EA  IF Y +  +   P + ++ +L   
Sbjct: 215 RGLIPDIVSWNSFMDSLCKHG--------RSKEAAEIF-YSMAAKGHRPNIVTYGILLHG 265

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
            A    +  ++S F  +   G+  +   + ILI+ + K G +    ++L  +     +PD
Sbjct: 266 YATEGCFADMMSFFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPD 325

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              +++LI  LC   R+ +A   F ++   G +PN + Y +LI G C  G  + A  L  
Sbjct: 326 VFTYSTLISALCRMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVY 385

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM N NG    + +PN   + +I+  +CKEG V  A  +F  +KD     D++ +N+LI 
Sbjct: 386 EMMN-NG----IPRPNIAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLID 440

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+C   +  +A  +L  M+  G+ PD  T+N +++   K+G++D+   L   M  + + P
Sbjct: 441 GYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKP 500

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            T T++ ++DG    GR   A+++   M  +GC  TV
Sbjct: 501 TTVTYNIILDGLFRAGRTVAAQKMLHEM--IGCGTTV 535



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/354 (29%), Positives = 153/354 (43%), Gaps = 79/354 (22%)

Query: 108 TSFNLLFGCLAKTKHYD-TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR--------- 157
           T+ N +  CL  TK  D  V  L +R+   G  PD ++Y I++   C   R         
Sbjct: 44  TAANTVLKCLCCTKRTDDAVKVLLRRMTELGCVPDAFSYAIVLKRLCDDNRSQQALDLLR 103

Query: 158 ------------------VSHGFVVLGRILRSC----------FTPDAVAFTSLIKGLCA 189
                             V HGF   G+I ++C          F PD V   S+I  LC 
Sbjct: 104 MMAKEEGVCSPDVVTYNTVIHGFFKEGKIGKACNLYHEMMQQGFVPDVVTHNSIINALCK 163

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
              +  A  L  ++   G  PN +TY+++I+G    G    A  +F EM  G G      
Sbjct: 164 ARAVDNAELLLRQMVDNGVPPNKVTYTSMIHGYSTLGRWEEATKMFREMT-GRGLI---- 218

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF----CYAN--- 302
            P+ V++ + +D LCK G   +A E+F  M  K   P++VTY  L+HG+    C+A+   
Sbjct: 219 -PDIVSWNSFMDSLCKHGRSKEAAEIFYSMAAKGHRPNIVTYGILLHGYATEGCFADMMS 277

Query: 303 -------DWNEANCL---------------------LIEMMDQGVQPDVVTFNVIMDELC 334
                  D   ANCL                     L EM  QG+ PDV T++ ++  LC
Sbjct: 278 FFNTMKGDGIVANCLVFTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALC 337

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + G++ +A      MI  GV PNT  + +L+ GFC  G +  AKEL   M + G
Sbjct: 338 RMGRLADAVDKFNQMIGTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNG 391



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 42/315 (13%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F +L    AK    D  + +   +   GL PD++TY+ LI+  C+MGR++       +++
Sbjct: 294 FTILIDAYAKRGMMDEAMLILSEMQGQGLSPDVFTYSTLISALCRMGRLADAVDKFNQMI 353

Query: 170 RSCFTPDAVAFTSLIKG------------------------------------LCAESRI 193
            +   P+ V + SLI+G                                    +C E R+
Sbjct: 354 GTGVQPNTVVYHSLIQGFCTHGDLVKAKELVYEMMNNGIPRPNIAFFNSIVHSICKEGRV 413

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
           M+A  +F  +K  G + ++I ++TLI+G C  G    A ++ + M +          P+T
Sbjct: 414 MDAHHIFDLVKDIGERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAG------IGPDT 467

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
            TY T+++G  K G +D    LF +M DK I P  VTYN ++ G   A     A  +L E
Sbjct: 468 FTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHE 527

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+  G    + T+N+I+  LC+N   DEA  + + +    V  N +T +T+++      R
Sbjct: 528 MIGCGTTVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQR 587

Query: 374 VNHAKELFVSMESMG 388
              AK+LF ++   G
Sbjct: 588 REEAKDLFSAISDSG 602



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 120/264 (45%), Gaps = 7/264 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +++ M N  P P  +  FN +   + K         +F  +   G   D+  +N LI+ +
Sbjct: 384 VYEMMNNGIPRPN-IAFFNSIVHSICKEGRVMDAHHIFDLVKDIGERSDIIMFNTLIDGY 442

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C +G +   F VL  ++ +   PD   + +L+ G     RI +   LF ++     KP  
Sbjct: 443 CLVGEMGKAFSVLDAMISAGIGPDTFTYNTLVNGYFKSGRIDDGLNLFREMSDKKIKPTT 502

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ +++GL R G T+ A  +  EM       G     +  TY  I+ GLC+    D+A
Sbjct: 503 VTYNIILDGLFRAGRTVAAQKMLHEM------IGCGTTVSLPTYNIILKGLCRNNCTDEA 556

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F ++   N+  ++ T N++I+         EA  L   + D G+ P+  T+ +++  
Sbjct: 557 IVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFSAISDSGLVPNASTYGIMIRN 616

Query: 333 LCKNGKMDEASRLLELMILRGVNP 356
           L K G ++EA  +   M   G  P
Sbjct: 617 LLKEGSVEEADNMFSSMEKSGCAP 640



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 111/258 (43%), Gaps = 7/258 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  IFD + ++      +  FN L              S+   + S G+ PD +TYN L
Sbjct: 415 DAHHIFDLVKDI-GERSDIIMFNTLIDGYCLVGEMGKAFSVLDAMISAGIGPDTFTYNTL 473

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +N + K GR+  G  +   +      P  V +  ++ GL    R + A  +  ++   G 
Sbjct: 474 VNGYFKSGRIDDGLNLFREMSDKKIKPTTVTYNIILDGLFRAGRTVAAQKMLHEMIGCGT 533

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ TY+ ++ GLCR   T  A+ +F+++   N KF      N  T  T+I+ +     
Sbjct: 534 TVSLPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKF------NITTLNTMINSMYTVQR 587

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            ++AK+LF  + D  + P+  TY  +I          EA+ +   M   G  P     N 
Sbjct: 588 REEAKDLFSAISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLND 647

Query: 329 IMDELCKNGKMDEASRLL 346
            +  L + G++ +A   +
Sbjct: 648 TIRTLLEKGEIVKAGNYM 665



 Score = 44.3 bits (103), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/132 (21%), Positives = 58/132 (43%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N++   L +    D  + +F++L +  +  ++ T N +IN    + R      +  
Sbjct: 537 LPTYNIILKGLCRNNCTDEAIVMFQKLCTMNVKFNITTLNTMINSMYTVQRREEAKDLFS 596

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            I  S   P+A  +  +I+ L  E  + EA  +F+ ++  GC P     +  I  L   G
Sbjct: 597 AISDSGLVPNASTYGIMIRNLLKEGSVEEADNMFSSMEKSGCAPCSRLLNDTIRTLLEKG 656

Query: 227 HTIVALNLFEEM 238
             + A N   ++
Sbjct: 657 EIVKAGNYMSKV 668


>gi|326529783|dbj|BAK04838.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 490

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 112/340 (32%), Positives = 166/340 (48%), Gaps = 20/340 (5%)

Query: 68  QFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT-- 125
           + L E     G G    + P  A  +FD +L  +P P        LF  LA+ +      
Sbjct: 18  ELLHEFKHHLGSG---TLWPELAHQLFDELLR-QPVPVSARPLGGLFSALARAQPSTACA 73

Query: 126 -----VLSLFKRLNSTG----LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
                 + LF R+        + PD YTYNILI+C  +  R   G    GR+L++  TPD
Sbjct: 74  DGPALAIDLFNRMTRARRRRVIAPDTYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPD 133

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            + ++SL++  C   R  EA  L    +  G  P+ I+YS ++   C  G +  AL+L  
Sbjct: 134 VITYSSLLQCFCDMKRTEEALDLLLH-RVSGDLPDAISYSVILKSFCDDGRSQCALDLLR 192

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            MA      G    P+ V+Y  +I G  KEG + KA  LF  M  +   PDVVTYNS+I+
Sbjct: 193 MMAEK----GAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTYNSVIN 248

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C A   ++A  +L  M+   VQPD VT+N ++      G++ E  RLL++M  +GV P
Sbjct: 249 ALCKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMP 308

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  T S++MD  C  G++  A+E+F S    G K  +  Y
Sbjct: 309 SLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLY 348



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/271 (33%), Positives = 143/271 (52%), Gaps = 11/271 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF-V 163
           P   ++N+L  C  +    D   + F RL  TG+ PD+ TY+ L+ CFC M R      +
Sbjct: 97  PDTYTYNILIDCCHRACRPDLGPAFFGRLLKTGITPDVITYSSLLQCFCDMKRTEEALDL 156

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK--PNVITYSTLING 221
           +L R+  S   PDA++++ ++K  C + R   A  L   +   G +  P+V++Y+ +I+G
Sbjct: 157 LLHRV--SGDLPDAISYSVILKSFCDDGRSQCALDLLRMMAEKGAEHSPSVVSYNLVIHG 214

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             + G    A +LF  M       G V  P+ VTY ++I+ LCK   +DKA+ +   M  
Sbjct: 215 FFKEGEISKACHLFHGMIQQ----GYV--PDVVTYNSVINALCKARAMDKAEVVLRSMVH 268

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
            ++ PD VTYNSLIHG+       E   LL  M  QGV P +VT + +MD LCK+GK+ E
Sbjct: 269 NSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCKHGKIKE 328

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           A  +     + G  P+   +S ++ G+ + G
Sbjct: 329 AEEMFYSRAVNGRKPDIVLYSIMLHGYAIEG 359



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 44/321 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR------- 157
           P + +++ L  C    K  +  L L      +G  PD  +Y++++  FC  GR       
Sbjct: 132 PDVITYSSLLQCFCDMKRTEEALDLLLH-RVSGDLPDAISYSVILKSFCDDGRSQCALDL 190

Query: 158 --------------------VSHGFVVLGRILRSC----------FTPDAVAFTSLIKGL 187
                               V HGF   G I ++C          + PD V + S+I  L
Sbjct: 191 LRMMAEKGAEHSPSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINAL 250

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    + +A  +   +     +P+ +TY++LI+G    G       L + M +     GV
Sbjct: 251 CKARAMDKAEVVLRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQ----GV 306

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +  P+ VT ++++D LCK G + +A+E+F         PD+V Y+ ++HG+       + 
Sbjct: 307 M--PSLVTCSSVMDYLCKHGKIKEAEEMFYSRAVNGRKPDIVLYSIMLHGYAIEGSLVKM 364

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L   M   GV PD+  FN++++   K G MD A    E M+ +GV PN  T+ T++  
Sbjct: 365 IDLCEVMARDGVVPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISA 424

Query: 368 FCLTGRVNHAKELFVSMESMG 388
           FC  GR++ A E F  M  MG
Sbjct: 425 FCKMGRMDDAMEKFSEMIDMG 445



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+NL+     K         LF  +   G  PD+ TYN +IN  CK   +    VV
Sbjct: 203 PSVVSYNLVIHGFFKEGEISKACHLFHGMIQQGYVPDVVTYNSVINALCKARAMDKAEVV 262

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++ +   PDAV + SLI G     ++ E   L   +++ G  P+++T S++++ LC+
Sbjct: 263 LRSMVHNSVQPDAVTYNSLIHGYLILGQLKETFRLLKVMRSQGVMPSLVTCSSVMDYLCK 322

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F   A  NG+     KP+ V Y+ ++ G   EG + K  +L   M    +
Sbjct: 323 HGKIKEAEEMFYSRAV-NGR-----KPDIVLYSIMLHGYAIEGSLVKMIDLCEVMARDGV 376

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD+  +N LI+ +      + A     +M+ QGV+P+  T+  ++   CK G+MD+A  
Sbjct: 377 VPDLPCFNILINAYAKYGMMDVAMLFFEDMLKQGVKPNEFTYLTVISAFCKMGRMDDAME 436

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
               MI  GV  +T  +  +++G+   G    A+E    M++M   H
Sbjct: 437 KFSEMIDMGVPLDTEVYMCMVEGYLNHGDSMKAEEFITKMKNMDIHH 483


>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g31850, chloroplastic-like [Cucumis sativus]
          Length = 1113

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            +A+ +F  M N+  +P   T FN+L     K+     +  L+K + S    PD  TYNI+
Sbjct: 806  KAWDLFKDMKNVGCAPDAFT-FNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNIV 864

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            I+   K   +         ++ S F P    +  LI GL    R+ EA  LF ++  +GC
Sbjct: 865  ISSLAKSNNLDKALDFFYDLVSSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDYGC 924

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            KPN   ++ LING  + G T  A  LF+ M N         +P+  +YT ++D LC  G 
Sbjct: 925  KPNCAIFNILINGYGKIGDTETACQLFKRMVNEG------IRPDLKSYTILVDCLCLAGR 978

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            VD+A   F ++K   ++PD + YN +I+G   +    EA  L  EM ++G+ PD+ T+N 
Sbjct: 979  VDEALYYFNELKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNS 1038

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +M  L   G +++A R+ E + L G+ P+  T++ L+ G+ L+    HA  ++ +M   G
Sbjct: 1039 LMLNLGLAGMVEQAKRMYEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDG 1098

Query: 389  CKHTVFSY 396
            C   + +Y
Sbjct: 1099 CNPNIGTY 1106



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 141/290 (48%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++  +F  L+       + ++  ++   G   + Y+YN LI+   + G       V  
Sbjct: 157 LDTYLTIFKALSIRGGLRQMTTVLNKMRKAGFVLNAYSYNGLIHLLIQSGFCGEALEVYR 216

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R++     P    +++L+  L  +        L  +++  G +PNV T++  I  L R G
Sbjct: 217 RMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAG 276

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  +F  M +        C P+ VTYT +ID LC  G ++ AKELF++MK     P
Sbjct: 277 KIDEAYEIFRRMDDEG------CGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKP 330

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D V Y +L+  F    D +       +M   G  PDVVTF +++D LCK    DEA    
Sbjct: 331 DQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATF 390

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++M  +G+ PN  T++TL+ G    GR+  A +L  +MES+G + T ++Y
Sbjct: 391 DVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTY 440



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F +L   L K + +D   + F  +   G+ P+L+TYN LI    + GR+     +
Sbjct: 365 PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKL 424

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P A  + + I          +A   F K+KA G  PN++  +  +  L  
Sbjct: 425 LDTMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAE 484

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +F    NG  + G+   P++VTY  ++    K G VD+A  L  +M     
Sbjct: 485 MGRLREAKTMF----NGLRENGLA--PDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGC 538

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+  NSLI     A   +EA  +   M D  + P VVT+N ++  L K G++ +A  
Sbjct: 539 EPDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIE 598

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L E MI +  +PNT +F+TL+D FC    V  A ++F  M  M CK  V +Y
Sbjct: 599 LFESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTY 650



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 143/281 (50%), Gaps = 8/281 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N L   L ++      L +++R+ S GL P L TY+ L+    K        V+L  +
Sbjct: 194 SYNGLIHLLIQSGFCGEALEVYRRMVSEGLKPSLKTYSALMVALGKKRDSEMVMVLLKEM 253

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+   FT  I+ L    +I EA  +F ++   GC P+++TY+ LI+ LC  G  
Sbjct: 254 EDLGLRPNVYTFTICIRVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQL 313

Query: 229 IVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
             A  LF +M ANG+       KP+ V Y T++D     G +D  KE + QM+     PD
Sbjct: 314 ENAKELFVKMKANGH-------KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPD 366

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVT+  L+   C A D++EA      M  QG+ P++ T+N ++  L + G++++A +LL+
Sbjct: 367 VVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHTYNTLICGLLRAGRIEDALKLLD 426

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M   GV P   T+ T +D F  +G    A E F  M++ G
Sbjct: 427 TMESVGVQPTAYTYITFIDYFGKSGETGKAVETFEKMKAKG 467



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/306 (29%), Positives = 149/306 (48%), Gaps = 8/306 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF  FD M   +   P L ++N L   L +    +  L L   + S G+ P  YTY  
Sbjct: 384 DEAFATFDVM-RKQGILPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYIT 442

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+ F K G          ++      P+ VA  + +  L    R+ EA  +F  L+  G
Sbjct: 443 FIDYFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENG 502

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+ ++    + G    A+NL  EM   NG     C+P+ +   ++ID L K G
Sbjct: 503 LAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIR-NG-----CEPDVIVVNSLIDSLYKAG 556

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A ++F +MKD  ++P VVTYN+L+ G        +A  L   M+ +   P+ ++FN
Sbjct: 557 RVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFN 616

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM-ES 386
            ++D  CKN +++ A ++   M +    P+  T++T++ G     +VNHA   F  + +S
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIKENKVNHAFWFFHQLKKS 676

Query: 387 MGCKHT 392
           M   H 
Sbjct: 677 MHPDHV 682



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L K +  + V+ L K +   GL P++YT+ I I    + G++   + +
Sbjct: 225 PSLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEI 284

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+      PD V +T LI  LC   ++  A  LF K+KA G KP+ + Y TL++    
Sbjct: 285 FRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFND 344

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G     L+ F+E  +     G +  P+ VT+T ++D LCK    D+A   F  M+ + I
Sbjct: 345 FGD----LDTFKEFWSQMEADGYM--PDVVTFTILVDVLCKARDFDEAFATFDVMRKQGI 398

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P++ TYN+LI G   A    +A  LL  M   GVQP   T+   +D   K+G+  +A  
Sbjct: 399 LPNLHTYNTLICGLLRAGRIEDALKLLDTMESVGVQPTAYTYITFIDYFGKSGETGKAVE 458

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             E M  +G+ PN    +  +      GR+  AK +F  +   G      +Y
Sbjct: 459 TFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTY 510



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 72/329 (21%), Positives = 138/329 (41%), Gaps = 44/329 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N L   L K    D    +F R+    L P + TYN L++   K GRV     +
Sbjct: 540 PDVIVVNSLIDSLYKAGRVDEAWQMFDRMKDMKLSPTVVTYNTLLSGLGKEGRVQKAIEL 599

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++    +P+ ++F +L+   C    +  A  +F+K+    CKP+V+TY+T+I GL +
Sbjct: 600 FESMIXKKCSPNTISFNTLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGLIK 659

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK----AKELFLQMK 280
                 A   F ++            P+ VT  T++ GL K G +      A++   Q++
Sbjct: 660 ENKVNHAFWFFHQLKKS-------MHPDHVTICTLLPGLVKCGQIGDAISIARDFMYQVR 712

Query: 281 -----------------DKNINPDVVTYNSLI-HGFCYANDW----------NEANCLLI 312
                            +  ++  ++    L+ +G C  + +          ++      
Sbjct: 713 FRVNRSFWEDLMGGTLVEAEMDKAIIFAEELVLNGICREDSFLIPLVRVLCKHKRELYAY 772

Query: 313 EMMDQ-----GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           ++ D+     G+ P + ++N ++ EL +    ++A  L + M   G  P+  TF+ L+  
Sbjct: 773 QIFDKFTKKLGISPTLASYNCLIGELLEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAV 832

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +G++    EL+  M S  CK    +Y
Sbjct: 833 HGKSGKITELFELYKEMISRRCKPDAITY 861



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 54/116 (46%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P   ++N +   L K++  +  L+L+  + + G+ PDLYTYN L+      G V     +
Sbjct: 996  PDFIAYNRIINGLGKSQRMEEALALYNEMRNRGIVPDLYTYNSLMLNLGLAGMVEQAKRM 1055

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               +  +   PD   + +LI+G         A  ++  +   GC PN+ TY+ L N
Sbjct: 1056 YEELQLAGLEPDVFTYNALIRGYSLSENPEHAYTVYKNMMVDGCNPNIGTYAQLPN 1111


>gi|147834641|emb|CAN60904.1| hypothetical protein VITISV_016343 [Vitis vinifera]
          Length = 580

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/279 (32%), Positives = 150/279 (53%), Gaps = 7/279 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF   D M+  +   P ++++NLL   L           + K +   G+ PD  TYNILI
Sbjct: 297 AFSYRDEMVK-KGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 355

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N + + G     F +   +L     P  V +TSLI  L   +R+ EA  LF K+   G  
Sbjct: 356 NGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+VI ++ +I+G C  G+   A  L +EM   +        P+ VT+ T++ G C+EG V
Sbjct: 416 PDVIMFNAMIDGHCANGNVERAFMLLKEMDRKS------VPPDEVTFNTLMQGRCREGKV 469

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A+ L  +MK + I PD ++YN+LI G+    D  +A  +  EM+  G  P ++T+N +
Sbjct: 470 EEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKDAFXVRDEMLSIGFNPTLLTYNAL 529

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +  LCKN + D A  LL+ M+ +G++P+ ST+ +L++G 
Sbjct: 530 IKCLCKNQEGDLAEELLKEMVNKGISPDDSTYLSLIEGM 568



 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/316 (31%), Positives = 150/316 (47%), Gaps = 35/316 (11%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F+LL G L K + +         +   G  P++ +YN +I+ +   G +     +L  + 
Sbjct: 182 FDLLEGKLKKAREF------IGFMEGLGFKPNVVSYNTIIHGYSSRGNIEGARRILDAMR 235

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD+  + SLI G+C E R+ EA+ LF K+   G  PN +TY+TLI+G C  G   
Sbjct: 236 VKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEIGLVPNAVTYNTLIDGYCNKGDLE 295

Query: 230 VALNLFEEMANG------------------NGKFGVVCK-----------PNTVTYTTII 260
            A +  +EM                      G+ G               P+ +TY  +I
Sbjct: 296 RAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEADDMIKEMRKKGIIPDAITYNILI 355

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +G  + G   +A +L  +M  K I P  VTY SLI+     N   EA+ L  +++DQGV 
Sbjct: 356 NGYSRCGNAKRAFDLHNEMLSKGIEPTHVTYTSLIYVLSRRNRMKEADDLFEKILDQGVS 415

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PDV+ FN ++D  C NG ++ A  LL+ M  + V P+  TF+TLM G C  G+V  A+ L
Sbjct: 416 PDVIMFNAMIDGHCANGNVERAFMLLKEMDRKSVPPDEVTFNTLMQGRCREGKVEEARML 475

Query: 381 FVSMESMGCKHTVFSY 396
              M+  G K    SY
Sbjct: 476 LDEMKXRGIKPDHISY 491



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 161/320 (50%), Gaps = 12/320 (3%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           S +G+I       A  I D M  ++   P   ++  L   + K    +    LF ++   
Sbjct: 219 SSRGNIEG-----ARRILDAM-RVKGIEPDSYTYGSLISGMCKEGRLEEASGLFDKMVEI 272

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           GL P+  TYN LI+ +C  G +   F     +++    P    +  L+  L  E R+ EA
Sbjct: 273 GLVPNAVTYNTLIDGYCNKGDLERAFSYRDEMVKKGIMPSVSTYNLLVHALFMEGRMGEA 332

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +  +++  G  P+ ITY+ LING  R G+   A +L  EM +         +P  VTY
Sbjct: 333 DDMIKEMRKKGIIPDAITYNILINGYSRCGNAKRAFDLHNEMLSKG------IEPTHVTY 386

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T++I  L +   + +A +LF ++ D+ ++PDV+ +N++I G C   +   A  LL EM  
Sbjct: 387 TSLIYVLSRRNRMKEADDLFEKILDQGVSPDVIMFNAMIDGHCANGNVERAFMLLKEMDR 446

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + V PD VTFN +M   C+ GK++EA  LL+ M  RG+ P+  +++TL+ G+   G +  
Sbjct: 447 KSVPPDEVTFNTLMQGRCREGKVEEARMLLDEMKXRGIKPDHISYNTLISGYGRRGDIKD 506

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  +   M S+G   T+ +Y
Sbjct: 507 AFXVRDEMLSIGFNPTLLTY 526


>gi|222640310|gb|EEE68442.1| hypothetical protein OsJ_26820 [Oryza sativa Japonica Group]
          Length = 621

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 144/291 (49%), Gaps = 29/291 (9%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  P++  YN LI+ +C  G + H   V   +  +  +P+   +T LI GLC   ++ 
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANG----NGKFGVV- 248
            A  LF+++   G +PNV+TY+ LI G C  GH   A  L   M  NG    +  F V+ 
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324

Query: 249 -----------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                                   K N V YT++IDGLCK G +D A EL  +M  +   
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFV 384

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  +Y+SLI G C     ++A  +L +MM++G+Q   VT+ +I+DEL +    +   ++
Sbjct: 385 PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + MI  G+NP+  T++  +  +C  GR+  A+ + V M   G    + +Y
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTY 495



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 161/355 (45%), Gaps = 66/355 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----------------------------- 135
           PPL   N L   LA+ + +  + SL  R+ +                             
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSL 98

Query: 136 --TGLFPDLYTYNILINCFCKMGRVSHG---FVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
              GL PD Y Y   +  +C+ G ++H    FV++   LR C    A  +T+L+ GL   
Sbjct: 99  LHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMP--LRGCLR-TAFTYTALLHGLLGA 155

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT------------------IVAL 232
             + EA A+F  ++A  C P+   Y+T+++GLC  G T                  IV  
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 233 NLF-------EEMANG----NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           N          EM +      G  G  C PN  TYT +I GLCK G V++A  LF +M +
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VVTY +LI G C       A  LL  M   G+ P+  TF+V++D LCK  K++E
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A   L  ++ +GV  N   +++L+DG C TG+++ A EL   M S G      SY
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           +++F  + +    PD + Y  +++  C+ GR     V+L   + + F P+ V + +LI G
Sbjct: 162 MAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    +  A  +F  +    C PNV TY+ LI+GLC++G    A+ LF  M        
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG---- 277

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
              +PN VTYT +I G C EG +  A  L   M+   + P+  T++ LI   C      E
Sbjct: 278 --LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   L  ++ +GV+ + V +  ++D LCK GK+D A  L++ MI  G  P+  ++S+L+D
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C   +++ A  +   M   G + +  +Y
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKGIQASPVTY 425



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  +F  M+     P  +T   L+ G      H      L   + + GL P+ +T+++
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQG-QCNEGHLQCAFRLLHLMETNGLVPNDWTFSV 322

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  +V    + LG +++     + V +TSLI GLC   +I  A  L  K+ + G
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +YS+LI+GLCR      A  + E+M       G+   P  VTYT IID L +E 
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK----GIQASP--VTYTIIIDELVREV 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             +  K++F +M    INPD+VTY   +  +C      +A  ++++M+D+GV P++VT+N
Sbjct: 437 GSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++      G + +A    E+M+ +G  PN  +++ L+
Sbjct: 497 TLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score = 88.2 bits (217), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/273 (24%), Positives = 116/273 (42%), Gaps = 44/273 (16%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL---- 165
           +  L   L KT   D    L +++ S G  PD ++Y+ LI+  C+  ++S   ++L    
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 166 -------------------------------GRILRSCFTPDAVAFTSLIKGLCAESRIM 194
                                           +++ +   PD V +T  ++  C E R+ 
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           +A ++  ++   G  PN++TY+TLI G    G    A + FE M  G G      KPN  
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMV-GKG-----WKPNED 528

Query: 255 TYTTIIDGLCKEGFVDKAKELF--LQMKD-KNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +YT ++  + K+   D + +++    MKD +  N D + +  LI+G        E + LL
Sbjct: 529 SYTVLLRLVVKKSSSDNSVDIWKIADMKDLQESNYDEIVWKILIYGLLQKGSVAEFSSLL 588

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             M + G QP      +I  E+    ++ E +R
Sbjct: 589 SVMKEHGYQPSNTINAMITGEITVTNEVQEIAR 621


>gi|297809453|ref|XP_002872610.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318447|gb|EFH48869.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 575

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 146/270 (54%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
             +++++   G+FP+LYTYN ++N  CK GR    F V   +     + + V + +LI G
Sbjct: 253 FEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGG 312

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           LC E +  EA  +  ++K++   PN+ITY+TLI+G C  G    AL+L  ++ +      
Sbjct: 313 LCREMKANEANKVMDQMKSYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRG---- 368

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+ VTY  ++ G C++G    A ++  +M+++ I P  VTY  LI  F  +++   
Sbjct: 369 --LSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMET 426

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L   M + G+ PDV T++V++   C  G+M+EASRL + M+ + + PN   ++T++ 
Sbjct: 427 AIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKMLEPNEVIYNTMIL 486

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C  G    A  LF  ME       V SY
Sbjct: 487 GYCKEGSSYRALRLFRDMEEKELAPNVASY 516



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/294 (31%), Positives = 154/294 (52%), Gaps = 10/294 (3%)

Query: 94  FDYMLNMRP---SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           FD ++ +R    SP  +    L+ GC  K    +    LF  +   GL  + +TY +LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGC-CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
              K G    GF +  ++      P+   +  ++  LC + R  +A  +F +++  G   
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLYTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N++TY+TLI GLCR      A  + ++M +       V  PN +TY T+IDG C  G + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANKVMDQMKS------YVINPNLITYNTLIDGFCSVGKLG 355

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA  L   +K + ++P +VTYN L+ GFC   D + A  ++ EM ++G++P  VT+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILI 415

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           D   ++  M+ A +L   M   G+ P+  T+S L+ GFC+ G++N A  LF SM
Sbjct: 416 DTFARSDNMETAIQLRSSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSM 469



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 144/256 (56%), Gaps = 6/256 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI G C +  I +A  LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++  FG   N  TY+ LI+GL + G       ++E+M   +G F     PN  TY  ++
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQE-HGVF-----PNLYTYNCVM 275

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           + LCK+G    A ++F +M+++ ++ ++VTYN+LI G C     NEAN ++ +M    + 
Sbjct: 276 NQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVIN 335

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+++T+N ++D  C  GK+ +A  L   +  RG++P+  T++ L+ GFC  G  + A ++
Sbjct: 336 PNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKM 395

Query: 381 FVSMESMGCKHTVFSY 396
              ME  G K +  +Y
Sbjct: 396 VKEMEERGIKPSKVTY 411



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 141/286 (49%), Gaps = 40/286 (13%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTP----------------------------- 175
           Y ++IN + +   +         ++   F P                             
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 176 -----DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                D  +F  +IKG C    I ++  L  +L+ FG  PNV+ Y+TLI+G C+ G    
Sbjct: 157 IKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A +LF EM    GKFG+V   N  TYT +I GL K G   +  E++ +M++  + P++ T
Sbjct: 217 AKDLFFEM----GKFGLVA--NEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLYT 270

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN +++  C      +A  +  EM ++GV  ++VT+N ++  LC+  K +EA+++++ M 
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANKVMDQMK 330

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +NPN  T++TL+DGFC  G++  A  L   ++S G   ++ +Y
Sbjct: 331 SYVINPNLITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVTY 376



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 141/271 (52%), Gaps = 7/271 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M   R     + ++N L G L +    +    +  ++ S  + P+L TYN L
Sbjct: 286 DAFKVFDEMRE-RGVSCNIVTYNTLIGGLCREMKANEANKVMDQMKSYVINPNLITYNTL 344

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC +G++     +   +     +P  V +  L+ G C +     AA +  +++  G 
Sbjct: 345 IDGFCSVGKLGKALSLCRDLKSRGLSPSLVTYNVLVSGFCRKGDTSGAAKMVKEMEERGI 404

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+ LI+   R+ +   A+ L   M     + G+V  P+  TY+ +I G C +G 
Sbjct: 405 KPSKVTYTILIDTFARSDNMETAIQLRSSME----ELGLV--PDVHTYSVLIHGFCIKGQ 458

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A  LF  M +K + P+ V YN++I G+C       A  L  +M ++ + P+V +++ 
Sbjct: 459 MNEASRLFKSMVEKMLEPNEVIYNTMILGYCKEGSSYRALRLFRDMEEKELAPNVASYSY 518

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTS 359
           ++  LCK  K+ EA  L+E MI  G++P+ +
Sbjct: 519 LIRVLCKERKLKEAEDLVEKMIDSGIDPSDT 549



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 79/245 (32%), Positives = 116/245 (47%), Gaps = 7/245 (2%)

Query: 85  ITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           +  NEA  + D M +   +P  L ++N L             LSL + L S GL P L T
Sbjct: 317 MKANEANKVMDQMKSYVINPN-LITYNTLIDGFCSVGKLGKALSLCRDLKSRGLSPSLVT 375

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           YN+L++ FC+ G  S    ++  +      P  V +T LI        +  A  L + ++
Sbjct: 376 YNVLVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMETAIQLRSSME 435

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G  P+V TYS LI+G C  G    A  LF+ M         + +PN V Y T+I G C
Sbjct: 436 ELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEK------MLEPNEVIYNTMILGYC 489

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG   +A  LF  M++K + P+V +Y+ LI   C      EA  L+ +M+D G+ P   
Sbjct: 490 KEGSSYRALRLFRDMEEKELAPNVASYSYLIRVLCKERKLKEAEDLVEKMIDSGIDPSDT 549

Query: 325 TFNVI 329
             N+I
Sbjct: 550 ICNLI 554



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K  +  Y  II+   +   +D +   F +M DK   P    +N+L+     ++ +N+  C
Sbjct: 91  KTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWC 150

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
              E   + V  DV +F +++   C+ G+++++  LL  +   G +PN   ++TL+DG C
Sbjct: 151 FFNESKIK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCC 209

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  AK+LF  M   G     ++Y
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTY 236


>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 532

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 165/303 (54%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F   L    SPP   +FN+L   L +    +    LF  + S G  PD+ TYN 
Sbjct: 180 HEAIFLFKENLAFH-SPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNT 238

Query: 148 LINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK   +     +L  +  R+  +PD + +TS+I G     ++  A+ LF ++   
Sbjct: 239 LISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRS 298

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P V+T++ LI+G  + G+ + A  + E+MA+ +      C P+ VT+T++IDG C+ 
Sbjct: 299 GIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYS------CIPDVVTFTSLIDGYCRT 352

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +    +++  MK +N++P++ TY+ +I+  C  N  +EA  LL ++    V P    +
Sbjct: 353 GDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIY 412

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++D  CK G +DEA+ ++  M  +   P+  TF+ L+ G C+ GR+  A ++F  M +
Sbjct: 413 NPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLA 472

Query: 387 MGC 389
           +GC
Sbjct: 473 IGC 475



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 146/274 (53%), Gaps = 7/274 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS-TGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + ++N L   L K    D    L K + S     PD+ TY  +I+ F K+G++    V
Sbjct: 231 PDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASV 290

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++RS   P  V F  LI G      ++ A A+  K+ ++ C P+V+T+++LI+G C
Sbjct: 291 LFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYC 350

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           RTG   + L +++ M   N        PN  TY+ II+ LCK+  + +A++L  Q+K  +
Sbjct: 351 RTGDIRLGLKVWDVMKARN------VSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSD 404

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P    YN +I GFC A + +EAN ++ EM ++  +PD VTF +++   C  G+M EA 
Sbjct: 405 VFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEAL 464

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            + + M+  G  P+  T S+L+      G+ + A
Sbjct: 465 DIFKKMLAIGCAPDNITISSLVACLLKAGKPSEA 498



 Score =  145 bits (367), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 142/282 (50%), Gaps = 7/282 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L K       + LFK   +    P+ +T+NILI   C++G V  GF +   + 
Sbjct: 166 YNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQ 225

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHT 228
                PD V + +LI GLC  + +  A  L  ++++   C P+V+TY+++I+G  + G  
Sbjct: 226 SFGCLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKL 285

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  LFEEM           +P  VT+  +IDG  K G +  A+ +  +M   +  PDV
Sbjct: 286 EAASVLFEEMIRSG------IEPTVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDV 339

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT+ SLI G+C   D      +   M  + V P++ T++VI++ LCK+ ++ EA  LL  
Sbjct: 340 VTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTYSVIINALCKDNRIHEARDLLRQ 399

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +    V P    ++ ++DGFC  G V+ A  +   ME   C+
Sbjct: 400 LKCSDVFPKPFIYNPVIDGFCKAGNVDEANVIVTEMEEKRCR 441



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 88/291 (30%), Positives = 143/291 (49%), Gaps = 7/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
            +++ LL   L +   +D V  +   + S G   D      L+  F + G+      ++ 
Sbjct: 93  FSTYELLIRSLCQMGLHDLVEMVIGYMRSDGHLIDSRVLGFLVTSFAQAGKFDLAKKLII 152

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +        +  +  L+  L    ++ EA  LF +  AF   PN  T++ LI GLCR G
Sbjct: 153 EVQGEEARISSFVYNYLLNELVKGGKVHEAIFLFKENLAFHSPPNTWTFNILIRGLCRVG 212

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-IN 285
                  LF  M +    FG  C P+ VTY T+I GLCK   +D+A +L  +++ +N  +
Sbjct: 213 EVEKGFELFNAMQS----FG--CLPDVVTYNTLISGLCKANELDRACDLLKEVQSRNDCS 266

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDV+TY S+I GF        A+ L  EM+  G++P VVTFNV++D   K G M  A  +
Sbjct: 267 PDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEPTVVTFNVLIDGFGKIGNMVAAEAM 326

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            E M      P+  TF++L+DG+C TG +    +++  M++      +++Y
Sbjct: 327 HEKMASYSCIPDVVTFTSLIDGYCRTGDIRLGLKVWDVMKARNVSPNIYTY 377



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 1/144 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++D M   R   P + +++++   L K         L ++L  + +FP  + YN +I+ F
Sbjct: 361 VWDVM-KARNVSPNIYTYSVIINALCKDNRIHEARDLLRQLKCSDVFPKPFIYNPVIDGF 419

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G V    V++  +      PD V FT LI G C + R++EA  +F K+ A GC P+ 
Sbjct: 420 CKAGNVDEANVIVTEMEEKRCRPDKVTFTILIIGHCMKGRMVEALDIFKKMLAIGCAPDN 479

Query: 213 ITYSTLINGLCRTGHTIVALNLFE 236
           IT S+L+  L + G    A ++ +
Sbjct: 480 ITISSLVACLLKAGKPSEAFHIVQ 503


>gi|413922209|gb|AFW62141.1| hypothetical protein ZEAMMB73_911481 [Zea mays]
          Length = 700

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 92/317 (29%), Positives = 163/317 (51%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A      F + D ML+  P P  +T +N+L   L +T   D   +L   + S  + 
Sbjct: 243 GDLEA-----GFRLRDQMLHDGPKPNVVT-YNVLLSGLCRTGRMDETRALMDEMASHSML 296

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TY+IL +   + G       +    L+      A   + L+ GLC + ++ +A  +
Sbjct: 297 PDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAKQV 356

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F  L   G  P  + Y+TLING C+      A  +FE+M + +       +P+ +TY  +
Sbjct: 357 FEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH------IRPDHITYNAL 410

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLCK   V KA++L ++M+   ++P V T+N+LI  +  A    +   +L +M  +G+
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + DV++F  ++   CKNGK+ EA  +L+ MI + V PN   +++++D +  +G    A  
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQALL 530

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M++ G   ++ +Y
Sbjct: 531 LVEKMKNSGVSASIVTY 547



 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 167/326 (51%), Gaps = 14/326 (4%)

Query: 72  ERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLF 130
           + C ++G  D+       A  +   M     +PPP   S+N++   L ++      L +F
Sbjct: 165 QACVAAGDLDV-------ALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVF 217

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
             +   G+ P+  TYN +I+   K G +  GF +  ++L     P+ V +  L+ GLC  
Sbjct: 218 DEMVDMGVAPNRITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRT 277

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            R+ E  AL  ++ +    P+  TYS L +GL RTG +   L+LF E    + K GV+  
Sbjct: 278 GRMDETRALMDEMASHSMLPDGFTYSILFDGLTRTGESQTMLSLFAE----SLKKGVML- 332

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
               T + +++GLCK+G V KAK++F  +    + P  V YN+LI+G+C   D   A C+
Sbjct: 333 -GAYTCSILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             +M  + ++PD +T+N +++ LCK   + +A  L+  M   GV+P+  TF+TL+D +  
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            G++     +   M+  G K  V S+
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSDVISF 477



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 159/309 (51%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   + D M +    P   T +++LF  L +T    T+LSLF      G+    YT +I
Sbjct: 281 DETRALMDEMASHSMLPDGFT-YSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSI 339

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  CK G+V+    V   ++ +   P  V + +LI G C    +  A  +F ++K+  
Sbjct: 340 LLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+ ITY+ LINGLC+      A +L  EM     K GV   P+  T+ T+ID     G
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEME----KSGV--DPSVETFNTLIDAYGTAG 453

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++K   +   M+ K I  DV+++ S++  FC      EA  +L +M+ + V P+   +N
Sbjct: 454 QLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYN 513

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+D   ++G  ++A  L+E M   GV+ +  T++ L+ G C + +++ A+EL  ++ + 
Sbjct: 514 SIIDAYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQ 573

Query: 388 GCKHTVFSY 396
           G +  V SY
Sbjct: 574 GLRPDVVSY 582



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 79/279 (28%), Positives = 143/279 (51%), Gaps = 7/279 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AFCIF+ M +    P  +T +N L   L K +       L   +  +G+ P + T+N LI
Sbjct: 388 AFCIFEQMKSRHIRPDHIT-YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +   G++   F VL  + +     D ++F S++K  C   +I EA A+   +      
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 506

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN   Y+++I+    +G T  AL L E+M N           + VTY  ++ GLC+   +
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQALLLVEKMKNSG------VSASIVTYNLLLKGLCRSSQI 560

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A+EL   ++++ + PDVV+YN++I   C   D ++A  LL EM   G++P + T + +
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTL 620

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +  L   G++ +   L + M+ + V P++S +  ++D +
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 143/289 (49%), Gaps = 11/289 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L+S NLL   L     +  V + F  L + G  PD + +N ++      G +     +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 165 LGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           L R+ RS     PDA ++  +I GL    +  +A  +F ++   G  PN ITY+T+I+G 
Sbjct: 180 LRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVAPNRITYNTMIDGH 239

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            + G       L ++M +         KPN VTY  ++ GLC+ G +D+ + L  +M   
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGP------KPNVVTYNVLLSGLCRTGRMDETRALMDEMASH 293

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           ++ PD  TY+ L  G     +      L  E + +GV     T +++++ LCK+GK+ +A
Sbjct: 294 SMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKA 353

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            ++ E+++  G+ P T  ++TL++G+C   +V   +  F   E M  +H
Sbjct: 354 KQVFEMLVHTGLVPTTVIYNTLINGYC---QVRDLRGAFCIFEQMKSRH 399



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 138/303 (45%), Gaps = 29/303 (9%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           ++L   L K         +F+ L  TGL P    YN LIN +C++  +   F +  ++  
Sbjct: 338 SILLNGLCKDGKVAKAKQVFEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKS 397

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD + + +LI GLC    + +A  L  +++  G  P+V T++TLI+     G    
Sbjct: 398 RHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEK 457

Query: 231 ALNLFEEMANGNGK-----FGVVCK------------------------PNTVTYTTIID 261
              +  +M     K     FG V K                        PN   Y +IID
Sbjct: 458 CFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIID 517

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + G  ++A  L  +MK+  ++  +VTYN L+ G C ++  +EA  L+  + +QG++P
Sbjct: 518 AYIESGDTEQALLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRP 577

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           DVV++N I+   C  G  D+A  LL+ M   G+ P   T  TL+      GRV+  + L+
Sbjct: 578 DVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTCHTLVSALASAGRVHDMECLY 637

Query: 382 VSM 384
             M
Sbjct: 638 QQM 640



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 76/260 (29%), Positives = 125/260 (48%), Gaps = 8/260 (3%)

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P L + N+L+     +GR +      G ++ +   PD  A+  +++   A   +  A A
Sbjct: 119 LPSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALA 178

Query: 199 LFTKL-KAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           +  ++ ++ G  P +  +Y+ +I GL R+G    AL +F+EM +     GV   PN +TY
Sbjct: 179 MLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVD----MGVA--PNRITY 232

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            T+IDG  K G ++    L  QM      P+VVTYN L+ G C     +E   L+ EM  
Sbjct: 233 NTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNVVTYNVLLSGLCRTGRMDETRALMDEMAS 292

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
             + PD  T++++ D L + G+      L    + +GV     T S L++G C  G+V  
Sbjct: 293 HSMLPDGFTYSILFDGLTRTGESQTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAK 352

Query: 377 AKELFVSMESMGCKHTVFSY 396
           AK++F  +   G   T   Y
Sbjct: 353 AKQVFEMLVHTGLVPTTVIY 372


>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
          Length = 808

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 6/310 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA CIFD M+   P P  ++   +L G    T      V ++F  + + G+ P+ + +N
Sbjct: 291 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 350

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILIN + + G +    ++   +      PD V F ++I  LC   R+ +A   F  +   
Sbjct: 351 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 410

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+   Y  LI G C  G  + A  L  EM N +     +  P    +++II+ LCKE
Sbjct: 411 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKE 465

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V + K++   M      P+VVT+NSL+ G+C   +  EA  LL  M   G++P+   +
Sbjct: 466 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 525

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D+A  +   M+ +GV P +  +S ++ G     R   AK++F  M  
Sbjct: 526 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 585

Query: 387 MGCKHTVFSY 396
            G   ++ +Y
Sbjct: 586 SGTTVSIHTY 595



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 43/340 (12%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF+ ML  +   P    FN+L    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 333 IFNLMLT-KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 391

Query: 153 CKMGRVS---HGF------------VVLGRILRSCFT---------------------PD 176
           C++GR+    H F             V G +++ C                       P 
Sbjct: 392 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 451

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F+S+I  LC E R+ E   +   +   G +PNV+T+++L+ G C  G+   A  L +
Sbjct: 452 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 511

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            MA+      +  +PN   Y T++DG CK G +D A  +F  M  K + P  V Y+ ++H
Sbjct: 512 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 565

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A     A  +  EM++ G    + T+ V++  LC+N   DEA+ LLE +    V  
Sbjct: 566 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 625

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  TF+ ++      GR   AKELF ++ + G    + +Y
Sbjct: 626 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTY 665



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 130/230 (56%), Gaps = 7/230 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P ++TYNILI+C+ ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  L
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 156

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++   G  P ++  +++I  LC+      A ++ ++M +          P+  TY+ I
Sbjct: 157 FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLI 210

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLCK   +DKA+ +  QM +    P+ +TYNSLIHG+  +  WNE+  +  +M   GV
Sbjct: 211 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 270

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            P V   N  +  L K+G+ +EA  + + M+L+G  P+  ++ST++ G+ 
Sbjct: 271 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYA 320



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 80/382 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A C+F  M+     P  L   N +   L K K  D   S+ +++  +G+ PDL+TY++
Sbjct: 151 DKAHCLFLEMMEQGVLPKILIC-NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSL 209

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG--------------------- 186
           +I+  CK   +     VL +++ +   P+++ + SLI G                     
Sbjct: 210 IIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 269

Query: 187 --------------LCAESRIMEAAALFTKLKAFGCKPNVITYST--------------- 217
                         L    R  EA  +F  +   G KP++I+YST               
Sbjct: 270 VIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD 329

Query: 218 ----------------------LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
                                 LIN   R G    A+ +FE+M N     G++  P+TVT
Sbjct: 330 VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVT 383

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+I  LC+ G +D A   F  M D  + P    Y  LI G C   +  +A  L+ EMM
Sbjct: 384 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 443

Query: 316 DQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           ++ +  P V  F+ I++ LCK G++ E   ++++M+  G  PN  TF++LM+G+CL G +
Sbjct: 444 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 503

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  L  +M S+G +   + Y
Sbjct: 504 EEAFALLDAMASIGIEPNCYIY 525



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/301 (27%), Positives = 149/301 (49%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++M+++   P       L+ GC    +       + + +N     P +  ++ 
Sbjct: 398 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 457

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK GRV+ G  ++  ++++   P+ V F SL++G C    + EA AL   + + G
Sbjct: 458 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 517

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN   Y TL++G C+ G    AL +F +M +         KP +V Y+ I+ GL +  
Sbjct: 518 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKG------VKPTSVLYSIILHGLFQAR 571

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AK++F +M +      + TY  ++ G C  N  +EAN LL ++    V+ D++TFN
Sbjct: 572 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 631

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  + K G+  EA  L + +   G+ PN  T+S ++           A  LF+S+E  
Sbjct: 632 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKS 691

Query: 388 G 388
           G
Sbjct: 692 G 692



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 44/325 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R SPP + ++N+L  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V  
Sbjct: 94  RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 152

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   ++     P  +   S+IK LC    + +A ++  K+   G  P++ TYS +I+
Sbjct: 153 AHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIID 212

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG------------------ 262
           GLC++     A  + E+M           +PN++TY ++I G                  
Sbjct: 213 GLCKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMS 266

Query: 263 -----------------LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-- 303
                            L K G  ++AK +F  M  K   PD+++Y++++HG+  A D  
Sbjct: 267 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSC 326

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             + + +   M+ +G+ P+   FN++++   + G MD+A  + E M  +G+ P+T TF+T
Sbjct: 327 LADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 386

Query: 364 LMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C  GR++ A   F  M  +G
Sbjct: 387 VISSLCRIGRLDDALHKFNHMVDIG 411



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 9/185 (4%)

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           P + TY+ LI+   R     + L +   +  NG G       P+  +Y+ +I G  K+G 
Sbjct: 98  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLG-------PDDFSYS-LIYGFVKDGE 149

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VDKA  LFL+M ++ + P ++  NS+I   C   + ++A  ++ +M+D G+ PD+ T+++
Sbjct: 150 VDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSL 209

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+D LCK+  MD+A R+LE M+  G  PN+ T+++L+ G+ ++G  N +  +F  M S G
Sbjct: 210 IIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 269

Query: 389 CKHTV 393
              TV
Sbjct: 270 VIPTV 274



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 7/282 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+     P  +T FN L        + +   +L   + S G+ P+ Y Y  L++ +
Sbjct: 474 IMDMMVQTGQRPNVVT-FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 532

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   ++
Sbjct: 533 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 592

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  ++ GLCR   T  A  L E++   N KF ++      T+  +I  + K G   +A
Sbjct: 593 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII------TFNIVISAMFKVGRRQEA 646

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           KELF  +    + P++ TY+ +I        + EA+ L I +   G   D    N I+  
Sbjct: 647 KELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRM 706

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           L    ++ +AS  L ++    +    ST S L   F   G +
Sbjct: 707 LLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGMI 748


>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g46100-like [Glycine max]
          Length = 479

 Score =  165 bits (418), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 96/294 (32%), Positives = 152/294 (51%), Gaps = 14/294 (4%)

Query: 104 PPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P  + S N+L   L K K   D+ L +F+ + + G  PD YTY  LIN  C++G +S   
Sbjct: 152 PSSVVSLNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAK 211

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +   + +  F+   V +TSLI GLC  + + EA  L  ++K    +PNV TYS+L++GL
Sbjct: 212 ELFKEMEQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGL 271

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ GH+  A+ L E M   +        PN VTY+T+I+GLCKE  + +A E+  +M+ +
Sbjct: 272 CKGGHSSQAMQLLEVMDKKHH------LPNMVTYSTLINGLCKERKLREAVEILDRMRIQ 325

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF-------NVIMDELCK 335
            + P+   Y  +I G C A  + EA   + EM+  G+ P+  ++       N+++  LC 
Sbjct: 326 GLKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCN 385

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           N     A +L   M  R ++    TF  L+  FC  G ++ A  +   M   GC
Sbjct: 386 NVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGC 439



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/219 (36%), Positives = 127/219 (57%), Gaps = 7/219 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI-VA 231
             P   A+ +++  L  E+ +  A   + +++  G   +V++ + LI  LC+   T+  A
Sbjct: 116 LRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLNILIKALCKNKETVDSA 175

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           L +F+EM N        C+P++ TY T+I+GLC+ G + +AKELF +M+ K  +  VVTY
Sbjct: 176 LRIFQEMPNRG------CQPDSYTYGTLINGLCRLGNISEAKELFKEMEQKGFSASVVTY 229

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            SLIHG C +N+ +EA  LL EM    ++P+V T++ +MD LCK G   +A +LLE+M  
Sbjct: 230 TSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDK 289

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   PN  T+STL++G C   ++  A E+   M   G K
Sbjct: 290 KHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLK 328



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 156/310 (50%), Gaps = 19/310 (6%)

Query: 87  PNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           P +A  +F  M    +RP+     ++  +   L +  H    +  ++ +   G+   + +
Sbjct: 101 PLDAIRVFHKMEGFQLRPTQ---KAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVS 157

Query: 145 YNILINCFCKMGR-VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            NILI   CK    V     +   +      PD+  + +LI GLC    I EA  LF ++
Sbjct: 158 LNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEM 217

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
           +  G   +V+TY++LI+GLC++ +   A+ L EEM   +       +PN  TY++++DGL
Sbjct: 218 EQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRND------IEPNVFTYSSLMDGL 271

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           CK G   +A +L   M  K+  P++VTY++LI+G C      EA  +L  M  QG++P+ 
Sbjct: 272 CKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNA 331

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNH 376
             +  I+  LC  G   EA+  ++ M+L G++PN +++S        ++ G C       
Sbjct: 332 GLYGKIISGLCAAGSYQEAANFIDEMVLGGISPNRASWSLHVRMHNMVVQGLCNNVDPPR 391

Query: 377 AKELFVSMES 386
           A +L++SM +
Sbjct: 392 AFQLYLSMRT 401



 Score =  119 bits (297), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/266 (27%), Positives = 133/266 (50%), Gaps = 14/266 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M     S   +T  +L+ G L ++ + D  + L + +    + P+++TY+ 
Sbjct: 208 SEAKELFKEMEQKGFSASVVTYTSLIHG-LCQSNNLDEAIGLLEEMKRNDIEPNVFTYSS 266

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  CK G  S    +L  + +    P+ V +++LI GLC E ++ EA  +  +++  G
Sbjct: 267 LMDGLCKGGHSSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQG 326

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT-------TII 260
            KPN   Y  +I+GLC  G    A N  +EM  G         PN  +++        ++
Sbjct: 327 LKPNAGLYGKIISGLCAAGSYQEAANFIDEMVLGG------ISPNRASWSLHVRMHNMVV 380

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC      +A +L+L M+ + I+ ++ T++ L+  FC   D ++A  +L EM+  G  
Sbjct: 381 QGLCNNVDPPRAFQLYLSMRTRCISVEIDTFDCLVKCFCKRGDLHKAARILEEMVLDGCI 440

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLL 346
           PD   +NV++  L    K+ EA+  L
Sbjct: 441 PDEGVWNVVIGGLWDRKKVREATEQL 466



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 7/225 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F  D   F  +I  L   ++   A  +  ++K   C      + ++  G  R    + A+
Sbjct: 46  FRHDHETFGLIISRLVTVNQFRPAEGMLERMKQEKCMVTEDIFLSICRGYGRVHRPLDAI 105

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            +F +M       G   +P    Y TI+D L +E  V +A   + +M++  I   VV+ N
Sbjct: 106 RVFHKME------GFQLRPTQKAYLTILDILVEENHVKRAIGFYREMRELGIPSSVVSLN 159

Query: 293 SLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            LI   C   +  + A  +  EM ++G QPD  T+  +++ LC+ G + EA  L + M  
Sbjct: 160 ILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEMEQ 219

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +G + +  T+++L+ G C +  ++ A  L   M+    +  VF+Y
Sbjct: 220 KGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRNDIEPNVFTY 264


>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 647

 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M      P P+ +FN+L   L K         L   +   G  P+  TYN 
Sbjct: 227 DEAVSLLDEMQVEGTFPNPV-AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNS 285

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C  G++     +L R++ +   P+ + F +L+ G     R ++   +   L+  G
Sbjct: 286 LVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKG 345

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N  +YS+LI+GL + G     + L++EM          CKPNT+ Y+ +IDGLC+EG
Sbjct: 346 YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKG------CKPNTIVYSALIDGLCREG 399

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AKE  ++MK+K   P+  TY+SL+ G+  A D ++A  +  EM D       V ++
Sbjct: 400 KPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYS 459

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++++ LCKNGK+ EA  + + M+ RG+  +   +S+++ GFC    V    +LF  M
Sbjct: 460 ILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQM 516



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 143/292 (48%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   SFNL+   L +  + D  + +F+ ++      D YTY+ L++  C  GR+     +
Sbjct: 173 PNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSL 232

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ VAF  LI  LC +  +  A+ L   +   GC PN +TY++L++GLC 
Sbjct: 233 LDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCL 292

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A++L   M          C PN +T+ T++DG  K G       + + +++K  
Sbjct: 293 KGKLDKAMSLLNRMVANK------CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGY 346

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +  +Y+SLI G            L  EM+++G +P+ + ++ ++D LC+ GK DEA  
Sbjct: 347 RGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKE 406

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M  +G  PN+ T+S+LM G+   G ++ A  ++  M    C H    Y
Sbjct: 407 YLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCY 458



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 9/288 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +T  +L+ G   K K  D  +SL  R+ +    P+  T+  L++ F K GR   G  
Sbjct: 278 PNEVTYNSLVHGLCLKGK-LDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVR 336

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL  +    +  +  +++SLI GL  E +      L+ ++   GCKPN I YS LI+GLC
Sbjct: 337 VLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLC 396

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G    A     EM N          PN+ TY++++ G  + G + KA  ++ +M D +
Sbjct: 397 REGKPDEAKEYLIEMKNKGH------TPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDND 450

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            N   V Y+ LI+G C      EA  +  +M+ +G++ DVV ++ ++   C    +++  
Sbjct: 451 CNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGM 510

Query: 344 RLLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +L   M+     + P+  T++ L++ FC    V+ A ++  +M   GC
Sbjct: 511 KLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGC 558



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/212 (33%), Positives = 118/212 (55%), Gaps = 3/212 (1%)

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           +F  + K         +A  LF ++ A F CK  V +++T++N + + G   +AL  +  
Sbjct: 102 SFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNH 161

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           + + N    +  +PN +++  +I  LC+ G VD+A E+F  M D+N   D  TY++L+HG
Sbjct: 162 VIDSNSFSNI--QPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHG 219

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C     +EA  LL EM  +G  P+ V FNV++  LCK G +  AS+L++ M L+G  PN
Sbjct: 220 LCNEGRIDEAVSLLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPN 279

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             T+++L+ G CL G+++ A  L   M +  C
Sbjct: 280 EVTYNSLVHGLCLKGKLDKAMSLLNRMVANKC 311



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 137/293 (46%), Gaps = 11/293 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           SF ++F    K       L LF R+ +       + ++N ++N   + G           
Sbjct: 102 SFIIMFKAYGKAHLPQKALDLFHRMGAEFHCKQTVKSFNTVLNVVIQEGCFDLALEFYNH 161

Query: 168 ILRSC----FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           ++ S       P+ ++F  +IK LC    + +A  +F  +    C  +  TYSTL++GLC
Sbjct: 162 VIDSNSFSNIQPNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLC 221

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A++L +EM    G F     PN V +  +I  LCK+G + +A +L   M  K 
Sbjct: 222 NEGRIDEAVSLLDEM-QVEGTF-----PNPVAFNVLISALCKKGDLSRASKLVDNMFLKG 275

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ VTYNSL+HG C     ++A  LL  M+     P+ +TF  ++D   K+G+  +  
Sbjct: 276 CVPNEVTYNSLVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGV 335

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+L  +  +G   N  ++S+L+ G    G+  H  +L+  M   GCK     Y
Sbjct: 336 RVLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVY 388



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 139/289 (48%), Gaps = 29/289 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S++ L   L K    +  + L+K +   G  P+   Y+ LI+  C+ G+       L  +
Sbjct: 352 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 411

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                TP++  ++SL+ G      I +A  ++ ++    C  + + YS LINGLC+ G  
Sbjct: 412 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 471

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNINP 286
             AL ++++M +   K  VV       Y+++I G C    V++  +LF QM   +  + P
Sbjct: 472 KEALIVWKQMLSRGIKLDVV------AYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQP 525

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN------GK-- 338
           DVVTYN L++ FC  N  + A  +L  M+DQG  PD +T ++ +  L  N      G+  
Sbjct: 526 DVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREF 585

Query: 339 MDE-------------ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           +DE             AS ++E+M+ + + P  ST++  +   C   +V
Sbjct: 586 LDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLCKPMKV 634


>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
          Length = 726

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  +   L K K  + V  L +R+ N  GLFPD  TYN+LI+   K G      
Sbjct: 264 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEAL 323

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             L       F  D V +++++   C   R+ EA  +  ++ + GC+P+V+TYST+++G 
Sbjct: 324 EFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A  + + M   +      CKPNTVT+T +++GLCK G   +A EL  + +++
Sbjct: 384 CRIGELDQARKMMKHMYKND------CKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEE 437

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P  +TY+ ++HGF       E+  ++++M+ +G  P  V  N+++  LCK+ K  EA
Sbjct: 438 WWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEA 497

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              +E    +G   N   F+T++ GF   G +  A  L   M
Sbjct: 498 KDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 539



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 5/273 (1%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            F  L    ++     + + +   +   G  PD+   N+ +N     GRV        R+
Sbjct: 164 QFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERM 223

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            R    PD   +  LIKGLC   R+++A  +   +   GC P+ I+Y T+++ LC+    
Sbjct: 224 RRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRV 283

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                L + M N  G F     P+ VTY  +I GL K G  D+A E   + + K    D 
Sbjct: 284 EEVRGLLQRMRNDAGLF-----PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDE 338

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y++++H FC      EA  ++ EM+ +G QPDVVT++ ++D  C+ G++D+A ++++ 
Sbjct: 339 VGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKH 398

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           M      PNT T + L++G C  G+ + A EL 
Sbjct: 399 MYKNDCKPNTVTHTALLNGLCKVGKTSEAWELL 431



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++  N+    L      D  L   +R+   G+ PD+YTYN LI   C   RV     +
Sbjct: 195 PDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEM 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLC 223
           +G +L++   PD +++ +++  LC E R+ E   L  +++   G  P+ +TY+ LI+GL 
Sbjct: 255 IGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 314

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + GH   AL    E  +   +F V    + V Y+ I+   C  G + +AKE+  +M  K 
Sbjct: 315 KHGHADEALEFLRE--SEGKRFRV----DEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG 368

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVTY++++ GFC   + ++A  ++  M     +P+ VT   +++ LCK GK  EA 
Sbjct: 369 CQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAW 428

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            LL         P+  T+S +M GF   G++  + ++ V M   G
Sbjct: 429 ELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG 473



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 164/353 (46%), Gaps = 22/353 (6%)

Query: 41  NEPSDPTTTAKLKESLRLTV--KDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
            E   P   A+L++ LR+    + RA L        ++  +GD+      E F   D   
Sbjct: 72  RESWSPKLEAQLRQLLRVLSPPQVRAVL--------RAQARGDVRRAF--EFFRWADRQW 121

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             R +P     F+ +   L+ T+ +D    + + +   G+      +  L+  + + G++
Sbjct: 122 RYRHAP---EVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKL 178

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                VL  + +    PD       +  L    R+ +A     +++  G +P+V TY+ L
Sbjct: 179 RSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCL 238

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I GLC     + A+ +   M   NG     C P+ ++Y T++  LCKE  V++ + L  +
Sbjct: 239 IKGLCGARRVVDAMEMIGVMLQ-NG-----CPPDKISYYTVMSFLCKEKRVEEVRGLLQR 292

Query: 279 MK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           M+ D  + PD VTYN LIHG       +EA   L E   +  + D V ++ I+   C NG
Sbjct: 293 MRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNG 352

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +M EA  ++  MI +G  P+  T+ST++DGFC  G ++ A+++   M    CK
Sbjct: 353 RMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCK 405



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  PD+ TY+ +++ FC++G +     ++  + ++   P+ V  T+L+ GLC   +  
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  L  K +     P+ ITYS +++G  R G    + ++  +M    G F     P TV
Sbjct: 426 EAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQ-KGFF-----PTTV 479

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
               +I  LCK+    +AK+   Q + K    +VV + ++IHGF    D   A  L+ +M
Sbjct: 480 EINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 539

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
                 PDVVT+ V++D L K G++ EA+ L+E M+ RGV P   T+ T++  +C  G
Sbjct: 540 YLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 98.6 bits (244), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 135/365 (36%), Gaps = 97/365 (26%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L   LAK  H D  L   +         D   Y+ +++ FC  GR++    +
Sbjct: 301 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 360

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +G ++     PD V +++++ G C    + +A  +   +    CKPN +T++ L+NGLC+
Sbjct: 361 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCK 420

Query: 225 TGHTIVALNLF----EEMA--------------NGNGKFGVVCK-----------PNTVT 255
            G T  A  L     EE                   GK    C            P TV 
Sbjct: 421 VGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVE 480

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN---------- 305
              +I  LCK+    +AK+   Q + K    +VV + ++IHGF    D            
Sbjct: 481 INLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMY 540

Query: 306 -------------------------EANCLLIEMMDQGVQPDVVTF-------------- 326
                                    EA  L+ +M+++GV P  VT+              
Sbjct: 541 LSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLE 600

Query: 327 -------------------NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                              N ++++LC  GK++EA  LL  ++      +  T   LM+ 
Sbjct: 601 DLLNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMES 660

Query: 368 FCLTG 372
           F   G
Sbjct: 661 FLNRG 665



 Score = 91.3 bits (225), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 8/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     +    D    + K +      P+  T+  L+N  CK+G+ S  + +
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +     +TP  + ++ ++ G   E ++ E+  +  ++   G  P  +  + LI+ LC+
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 490

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A +  E+  +        C  N V +TT+I G  ++G ++ A  L   M   N 
Sbjct: 491 DRKPAEAKDFMEQCQSKG------CTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNR 544

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDVVTY  ++          EA  L+ +M+++GV P  VT+  ++   C+ G +++   
Sbjct: 545 HPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLN 604

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LLE M+ R      S ++ +++  C  G++N A  L 
Sbjct: 605 LLEKMLAR--QEMKSAYNQVVEKLCAFGKLNEAYSLL 639



 Score = 74.7 bits (182), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 65/279 (23%), Positives = 114/279 (40%), Gaps = 32/279 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +  +M      P  +T   LL G L K         L  +       P   TY++
Sbjct: 390 DQARKMMKHMYKNDCKPNTVTHTALLNG-LCKVGKTSEAWELLNKSEEEWWTPSDITYSV 448

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ F + G++     V+ ++L+  F P  V    LI  LC + +  EA     + ++ G
Sbjct: 449 VMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKG 508

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVVCK-- 250
           C  NV+ ++T+I+G  R G    AL+L ++M   N               GK G + +  
Sbjct: 509 CTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEAT 568

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P  VTY T+I   C++G ++    L  +M  +        YN ++   
Sbjct: 569 GLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKL 626

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           C     NEA  LL +++      D  T +++M+     G
Sbjct: 627 CAFGKLNEAYSLLYKILRTASVRDAQTCHILMESFLNRG 665



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A+ +   M  + +      +  L+  +  A     A  +L  M   G  PD+   N+ 
Sbjct: 144 DPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMA 203

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ L   G++D+A    E M   GV P+  T++ L+ G C   RV  A E+   M   GC
Sbjct: 204 VNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGC 263

Query: 390 KHTVFSY 396
                SY
Sbjct: 264 PPDKISY 270


>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
 gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
          Length = 735

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 144/291 (49%), Gaps = 29/291 (9%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  P++  YN LI+ +C  G + H   V   +  +  +P+   +T LI GLC   ++ 
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANG----NGKFGVV- 248
            A  LF+++   G +PNV+TY+ LI G C  GH   A  L   M  NG    +  F V+ 
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324

Query: 249 -----------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                                   K N V YT++IDGLCK G +D A EL  +M  +   
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFV 384

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  +Y+SLI G C     ++A  +L +MM++G+Q   VT+ +I+DEL +    +   ++
Sbjct: 385 PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + MI  G+NP+  T++  +  +C  GR+  A+ + V M   G    + +Y
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTY 495



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 110/355 (30%), Positives = 161/355 (45%), Gaps = 66/355 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----------------------------- 135
           PPL   N L   LA+ + +  + SL  R+ +                             
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSL 98

Query: 136 --TGLFPDLYTYNILINCFCKMGRVSHG---FVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
              GL PD Y Y   +  +C+ G ++H    FV++   LR C    A  +T+L+ GL   
Sbjct: 99  LHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMP--LRGCLR-TAFTYTALLHGLLGA 155

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT------------------IVAL 232
             + EA A+F  ++A  C P+   Y+T+++GLC  G T                  IV  
Sbjct: 156 GMVREAMAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 233 NLF-------EEMANG----NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           N          EM +      G  G  C PN  TYT +I GLCK G V++A  LF +M +
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VVTY +LI G C       A  LL  M   G+ P+  TF+V++D LCK  K++E
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A   L  ++ +GV  N   +++L+DG C TG+++ A EL   M S G      SY
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           +++F  + +    PD + Y  +++  C+ GR     V+L   + + F P+ V + +LI G
Sbjct: 162 MAVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    +  A  +F  +    C PNV TY+ LI+GLC++G    A+ LF  M        
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG---- 277

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
              +PN VTYT +I G C EG +  A  L   M+   + P+  T++ LI   C      E
Sbjct: 278 --LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   L  ++ +GV+ + V +  ++D LCK GK+D A  L++ MI  G  P+  ++S+L+D
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C   +++ A  +   M   G + +  +Y
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKGIQASPVTY 425



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  +F  M+     P  +T   L+ G      H      L   + + GL P+ +T+++
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQG-QCNEGHLQCAFRLLHLMETNGLVPNDWTFSV 322

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  +V    + LG +++     + V +TSLI GLC   +I  A  L  K+ + G
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +YS+LI+GLCR      A  + E+M       G+   P  VTYT IID L +E 
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK----GIQASP--VTYTIIIDELVREV 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             +  K++F +M    INPD+VTY   +  +C      +A  ++++M+D+GV P++VT+N
Sbjct: 437 GSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++      G + +A    E+M+ +G  PN  +++ L+
Sbjct: 497 TLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 78/361 (21%), Positives = 134/361 (37%), Gaps = 88/361 (24%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL---- 165
           +  L   L KT   D    L +++ S G  PD ++Y+ LI+  C+  ++S   ++L    
Sbjct: 355 YTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLIDGLCRQKKLSQATLMLEDMM 414

Query: 166 -------------------------------GRILRSCFTPDAVAFTSLIKGLCAESRIM 194
                                           +++ +   PD V +T  ++  C E R+ 
Sbjct: 415 EKGIQASPVTYTIIIDELVREVGSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRME 474

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           +A ++  ++   G  PN++TY+TLI G    G    A + FE M  G G      KPN  
Sbjct: 475 DAESMIVQMVDRGVFPNLVTYNTLIRGYANLGLVSQAFSTFEVMV-GKG-----WKPNED 528

Query: 255 TYTTI-----------------------------------------------IDGLCKEG 267
           +YT +                                               I  LC+  
Sbjct: 529 SYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVD 588

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++AK  F+ M++ N+ P    Y S+I   C      +A  LL  M   G  P + ++ 
Sbjct: 589 RLEEAKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYR 648

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+  LC+ G    A  +   ++L+  N +   +  L+ G    G V     L   M+  
Sbjct: 649 IIISSLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKGSVAEFSSLLSVMKEH 708

Query: 388 G 388
           G
Sbjct: 709 G 709



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 64/296 (21%), Positives = 121/296 (40%), Gaps = 19/296 (6%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M+    +P  + ++ +      +    +   S+  ++   G+FP+L TYN LI  +
Sbjct: 444 IFDKMIATGINPD-IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF--TKLKAFGCKP 210
             +G VS  F     ++   + P+  ++T L++ +  +S    +  ++    +K      
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLL 562

Query: 211 NVIT----------YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             IT          YS  I  LCR      A + F  M N N        P+   YT+II
Sbjct: 563 EDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNAN------LTPSEDVYTSII 616

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           D  C+   +  A  L   M      P + +Y  +I   C   ++  A  +  +++ +   
Sbjct: 617 DCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIISSLCEGGNFRTAKEVFGDLLLKESN 676

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
            D + + +++  L + G + E S LL +M   G  P+ +  + +     +T  V  
Sbjct: 677 YDEIVWKILIYGLLQKGSVAEFSSLLSVMKEHGYQPSNTINAMITGEITVTNEVQE 732



 Score = 42.0 bits (97), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 31/161 (19%), Positives = 61/161 (37%)

Query: 66  LEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT 125
           L + + ++  S    DI  I   +   +    +  R  P     ++    CL +    + 
Sbjct: 533 LLRLVVKKSSSDNSVDIWKIADMKDLQVLLEDITERQLPLAADIYSCFIRCLCRVDRLEE 592

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
               F  + +  L P    Y  +I+C C++  ++    +L  + +S + P   ++  +I 
Sbjct: 593 AKHFFMGMQNANLTPSEDVYTSIIDCCCRLKILTDALTLLDSMTKSGYLPHLESYRIIIS 652

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            LC       A  +F  L       + I +  LI GL + G
Sbjct: 653 SLCEGGNFRTAKEVFGDLLLKESNYDEIVWKILIYGLLQKG 693


>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
 gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
          Length = 727

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 151/321 (47%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N +   L K++  +     F  + + GL PDL TYN ++N +CK G +     +
Sbjct: 347 PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWL 406

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG + R+   P  + + +LI G C    + EA  L  ++   GC P+V TY+ L+NG  +
Sbjct: 407 LGDLRRAGLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHK 466

Query: 225 TGHTIVALNLFEEMANGNGK---------------FGVVCK--------------PNTVT 255
             +  +A   F+EM +   +                G   K              P+TVT
Sbjct: 467 VRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVT 526

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  IIDGLCK G +  AK+L ++M    + PD +TY  LIH  C     +EA  LL  M+
Sbjct: 527 YNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMV 586

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G+QP VVT+ +++   C+ G +  A      M+  G+ PN  T++ L+   C TGR  
Sbjct: 587 SDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTL 646

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A   F  M   G     ++Y
Sbjct: 647 LAYHHFHEMLERGLAPNKYTY 667



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/295 (30%), Positives = 146/295 (49%), Gaps = 11/295 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N +   L     +D V ++++ +    + P + TYN L++ F K GR     ++
Sbjct: 206 PDVRDCNCVLRVLRDAARWDDVRAVYREMLQLEIEPTIVTYNTLLDSFLKEGRKDEASML 265

Query: 165 LGRILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           L  +      C   D V +  +I  L  E  +  AA L   ++    K +  TY+ LI  
Sbjct: 266 LKEMETQGGGCLLND-VTYNVVISFLAREGHLENAAKLVDSMR-LSKKASSFTYNPLITA 323

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           L   G       L  EM N     G++  P  VTY  II GL K   V+ A+  F +M+ 
Sbjct: 324 LLERGFVQKVEALQMEMENE----GIM--PTLVTYNAIIHGLLKSEQVEAAQLKFAEMRA 377

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + PD++TYNS+++G+C A +  EA  LL ++   G+ P V+T+N ++D  C+ G ++E
Sbjct: 378 MGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGGLEE 437

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A RL E M+ +G  P+  T++ LM+G      +  A+E F  M S G +   F+Y
Sbjct: 438 ARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAY 492



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/275 (29%), Positives = 126/275 (45%), Gaps = 7/275 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L     K ++       F  + S GL PD + YN  I     +G     F +
Sbjct: 452 PDVCTYTILMNGSHKVRNLPMAREFFDEMLSKGLQPDCFAYNTRICAELILGDTHKAFQL 511

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD V +  +I GLC    + +A  L  K+ + G +P+ ITY+ LI+  C 
Sbjct: 512 REVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCE 571

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L       NG      +P+ VTYT +I   C+ G +  A   F +M D  I
Sbjct: 572 RGLLSEARKLL------NGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGI 625

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TYN LIH  C       A     EM+++G+ P+  T+ +++D  C+ G   +A R
Sbjct: 626 EPNEITYNVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIR 685

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           L   M   G+ P+  T + L  GF   G + HA E
Sbjct: 686 LYFEMHQNGIPPDYCTHNALFKGFD-KGHMYHAIE 719



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 68/215 (31%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G++PD  TYN++I+  CK G +     +  +++     PD + +T LI   C    + EA
Sbjct: 519 GIYPDTVTYNVIIDGLCKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEA 578

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L   + + G +P+V+TY+ LI+  CR G+   A   F +M +      V  +PN +TY
Sbjct: 579 RKLLNGMVSDGLQPSVVTYTILIHTCCRRGNLYSAYGWFRKMLD------VGIEPNEITY 632

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I  LC+ G    A   F +M ++ + P+  TY  LI G C   +W +A  L  EM  
Sbjct: 633 NVLIHALCRTGRTLLAYHHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQ 692

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            G+ PD  T N +     K G M  A   LE ++L
Sbjct: 693 NGIPPDYCTHNALFKGFDK-GHMYHAIEYLENIVL 726



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 1/137 (0%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L     +  +  +    F+++   G+ P+  TYN+LI+  C+ GR    +  
Sbjct: 592 PSVVTYTILIHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCRTGRTLLAYHH 651

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+   +T LI G C E    +A  L+ ++   G  P+  T++ L  G  +
Sbjct: 652 FHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGFDK 711

Query: 225 TGHTIVALNLFEEMANG 241
            GH   A+   E +  G
Sbjct: 712 -GHMYHAIEYLENIVLG 727


>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
 gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
          Length = 740

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 153/310 (49%), Gaps = 6/310 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYN 146
           NEA CIFD M+   P P  ++   +L G    T      V ++F  + + G+ P+ + +N
Sbjct: 205 NEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLADVHNIFNLMLTKGIAPNKHVFN 264

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILIN + + G +    ++   +      PD V F ++I  LC   R+ +A   F  +   
Sbjct: 265 ILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDI 324

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+   Y  LI G C  G  + A  L  EM N +     +  P    +++II+ LCKE
Sbjct: 325 GVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIINNLCKE 379

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G V + K++   M      P+VVT+NSL+ G+C   +  EA  LL  M   G++P+   +
Sbjct: 380 GRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIY 439

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D+A  +   M+ +GV P +  +S ++ G     R   AK++F  M  
Sbjct: 440 GTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIE 499

Query: 387 MGCKHTVFSY 396
            G   ++ +Y
Sbjct: 500 SGTTVSIHTY 509



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 43/340 (12%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF+ ML  +   P    FN+L    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 247 IFNLMLT-KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 305

Query: 153 CKMGRVS---HGF------------VVLGRILRSCFT---------------------PD 176
           C++GR+    H F             V G +++ C                       P 
Sbjct: 306 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 365

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F+S+I  LC E R+ E   +   +   G +PNV+T+++L+ G C  G+   A  L +
Sbjct: 366 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 425

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            MA+      +  +PN   Y T++DG CK G +D A  +F  M  K + P  V Y+ ++H
Sbjct: 426 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 479

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A     A  +  EM++ G    + T+ V++  LC+N   DEA+ LLE +    V  
Sbjct: 480 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 539

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  TF+ ++      GR   AKELF ++ + G    + +Y
Sbjct: 540 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTY 579



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/229 (32%), Positives = 130/229 (56%), Gaps = 7/229 (3%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P ++TYNILI+C+ ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  L
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCL 70

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++   G  P ++  +++I  LC+      A ++ ++M +          P+  TY+ I
Sbjct: 71  FLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLI 124

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDGLCK   +DKA+ +  QM +    P+ +TYNSLIHG+  +  WNE+  +  +M   GV
Sbjct: 125 IDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGV 184

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            P V   N  +  L K+G+ +EA  + + M+L+G  P+  ++ST++ G+
Sbjct: 185 IPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGY 233



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 103/382 (26%), Positives = 169/382 (44%), Gaps = 80/382 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A C+F  M+     P  L   N +   L K K  D   S+ +++  +G+ PDL+TY++
Sbjct: 65  DKAHCLFLEMMEQGVLPKILIC-NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSL 123

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG--------------------- 186
           +I+  CK   +     VL +++ +   P+++ + SLI G                     
Sbjct: 124 IIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 183

Query: 187 --------------LCAESRIMEAAALFTKLKAFGCKPNVITYST--------------- 217
                         L    R  EA  +F  +   G KP++I+YST               
Sbjct: 184 VIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSCLAD 243

Query: 218 ----------------------LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
                                 LIN   R G    A+ +FE+M N     G++  P+TVT
Sbjct: 244 VHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTVT 297

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           + T+I  LC+ G +D A   F  M D  + P    Y  LI G C   +  +A  L+ EMM
Sbjct: 298 FATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMM 357

Query: 316 DQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
           ++ +  P V  F+ I++ LCK G++ E   ++++M+  G  PN  TF++LM+G+CL G +
Sbjct: 358 NKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNM 417

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A  L  +M S+G +   + Y
Sbjct: 418 EEAFALLDAMASIGIEPNCYIY 439



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++M+++   P       L+ GC    +       + + +N     P +  ++ 
Sbjct: 312 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 371

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK GRV+ G  ++  ++++   P+ V F SL++G C    + EA AL   + + G
Sbjct: 372 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 431

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN   Y TL++G C+ G    AL +F +M +     GV  KP +V Y+ I+ GL +  
Sbjct: 432 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSIILHGLFQAR 485

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AK++F +M +      + TY  ++ G C  N  +EAN LL ++    V+ D++TFN
Sbjct: 486 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 545

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  + K G+  EA  L + +   G+ PN  T+S ++           A  LF+S+E  
Sbjct: 546 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKS 605

Query: 388 G 388
           G
Sbjct: 606 G 606



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 87/325 (26%), Positives = 154/325 (47%), Gaps = 44/325 (13%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R SPP + ++N+L  C  +    D  L++  RL   GL PD ++Y+ LI  F K G V  
Sbjct: 8   RHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYS-LIYGFVKDGEVDK 66

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   ++     P  +   S+IK LC    + +A ++  K+   G  P++ TYS +I+
Sbjct: 67  AHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLIID 126

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG------------------ 262
           GLC++     A  + E+M           +PN++TY ++I G                  
Sbjct: 127 GLCKSKAMDKAERVLEQMVEAG------TRPNSITYNSLIHGYSISGMWNESVRVFKQMS 180

Query: 263 -----------------LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND-- 303
                            L K G  ++AK +F  M  K   PD+++Y++++HG+  A D  
Sbjct: 181 SCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTMLHGYATATDSC 240

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             + + +   M+ +G+ P+   FN++++   + G MD+A  + E M  +G+ P+T TF+T
Sbjct: 241 LADVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFAT 300

Query: 364 LMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C  GR++ A   F  M  +G
Sbjct: 301 VISSLCRIGRLDDALHKFNHMVDIG 325



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 62/185 (33%), Positives = 107/185 (57%), Gaps = 9/185 (4%)

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           P + TY+ LI+   R     + L +   +  NG G       P+  +Y+ +I G  K+G 
Sbjct: 12  PTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLG-------PDDFSYS-LIYGFVKDGE 63

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VDKA  LFL+M ++ + P ++  NS+I   C   + ++A  ++ +M+D G+ PD+ T+++
Sbjct: 64  VDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSL 123

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+D LCK+  MD+A R+LE M+  G  PN+ T+++L+ G+ ++G  N +  +F  M S G
Sbjct: 124 IIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 183

Query: 389 CKHTV 393
              TV
Sbjct: 184 VIPTV 188



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/293 (26%), Positives = 128/293 (43%), Gaps = 8/293 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+     P  +T FN L        + +   +L   + S G+ P+ Y Y  L++ +
Sbjct: 388 IMDMMVQTGQRPNVVT-FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 446

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   ++
Sbjct: 447 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 506

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  ++ GLCR   T  A  L E++   N KF ++      T+  +I  + K G   +A
Sbjct: 507 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII------TFNIVISAMFKVGRRQEA 560

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           KELF  +    + P++ TY+ +I        + EA+ L I +   G   D    N I+  
Sbjct: 561 KELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRM 620

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV-NHAKELFVSM 384
           L    ++ +AS  L ++    +    ST S L   F   G+   H K L  +M
Sbjct: 621 LLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGKYREHIKLLPANM 673


>gi|125561029|gb|EAZ06477.1| hypothetical protein OsI_28715 [Oryza sativa Indica Group]
          Length = 621

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 91/291 (31%), Positives = 144/291 (49%), Gaps = 29/291 (9%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  P++  YN LI+ +C  G + H   V   +  +  +P+   +T LI GLC   ++ 
Sbjct: 205 SNGFEPNIVVYNALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVE 264

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANG----NGKFGVV- 248
            A  LF+++   G +PNV+TY+ LI G C  GH   A  L   M  NG    +  F V+ 
Sbjct: 265 RAMVLFSRMVEAGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLI 324

Query: 249 -----------------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                                   K N V YT++IDGLCK G +D A EL  +M  +   
Sbjct: 325 DALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFV 384

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  +Y+SLI G C     ++A  +L +MM++G+Q   VT+ +I+DEL +    +   ++
Sbjct: 385 PDAHSYSSLIDGLCRQKKLSQATLMLEDMMEKGIQASPVTYTIIIDELVREVGSEGPKKI 444

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + MI  G+NP+  T++  +  +C  GR+  A+ + V M   G    + +Y
Sbjct: 445 FDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTY 495



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 109/355 (30%), Positives = 160/355 (45%), Gaps = 66/355 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS----------------------------- 135
           PPL   N L   LA+ + +  + SL  R+ +                             
Sbjct: 39  PPLRCLNTLLMALARHRMFPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSL 98

Query: 136 --TGLFPDLYTYNILINCFCKMGRVSHG---FVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
              GL PD Y Y   +  +C+ G ++H    FV++   LR C    A  +T+L+ GL   
Sbjct: 99  LHAGLAPDSYAYTSFVLGYCRAGMLTHACRVFVLMP--LRGCLR-TAFTYTALLHGLLGA 155

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT------------------IVAL 232
             + EA  +F  ++A  C P+   Y+T+++GLC  G T                  IV  
Sbjct: 156 GMVREAMTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVY 215

Query: 233 NLF-------EEMANG----NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
           N          EM +      G  G  C PN  TYT +I GLCK G V++A  LF +M +
Sbjct: 216 NALIDGYCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVE 275

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             + P+VVTY +LI G C       A  LL  M   G+ P+  TF+V++D LCK  K++E
Sbjct: 276 AGLEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           A   L  ++ +GV  N   +++L+DG C TG+++ A EL   M S G      SY
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSY 390



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 81/270 (30%), Positives = 136/270 (50%), Gaps = 6/270 (2%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           +++F  + +    PD + Y  +++  C+ GR     V+L   + + F P+ V + +LI G
Sbjct: 162 MTVFVGMRADSCAPDTHVYATMVHGLCEAGRTEEAEVLLEEAMSNGFEPNIVVYNALIDG 221

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
            C    +  A  +F  +    C PNV TY+ LI+GLC++G    A+ LF  M        
Sbjct: 222 YCNAGEMEHALKVFEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMVEAG---- 277

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
              +PN VTYT +I G C EG +  A  L   M+   + P+  T++ LI   C      E
Sbjct: 278 --LEPNVVTYTALIQGQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCKREKVEE 335

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   L  ++ +GV+ + V +  ++D LCK GK+D A  L++ MI  G  P+  ++S+L+D
Sbjct: 336 AQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEGFVPDAHSYSSLID 395

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C   +++ A  +   M   G + +  +Y
Sbjct: 396 GLCRQKKLSQATLMLEDMMEKGIQASPVTY 425



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 84/278 (30%), Positives = 142/278 (51%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  +F  M+     P  +T   L+ G      H      L   + + GL P+ +T+++
Sbjct: 264 ERAMVLFSRMVEAGLEPNVVTYTALIQG-QCNEGHLQCAFRLLHLMETNGLVPNDWTFSV 322

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  +V    + LG +++     + V +TSLI GLC   +I  A  L  K+ + G
Sbjct: 323 LIDALCKREKVEEAQLFLGSLVKKGVKVNEVVYTSLIDGLCKTGKIDAADELMQKMISEG 382

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +YS+LI+GLCR      A  + E+M       G+   P  VTYT IID L +E 
Sbjct: 383 FVPDAHSYSSLIDGLCRQKKLSQATLMLEDMMEK----GIQASP--VTYTIIIDELVREV 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             +  K++F +M    INPD+VTY   +  +C      +A  ++++M+D+GV P++VT+N
Sbjct: 437 GSEGPKKIFDKMIATGINPDIVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++      G + +A    E+M+ +G  PN  +++ L+
Sbjct: 497 TLIRGYANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLL 534



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 75/181 (41%), Gaps = 19/181 (10%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IFD M+    +P  + ++ +      +    +   S+  ++   G+FP+L TYN LI  +
Sbjct: 444 IFDKMIATGINPD-IVTYTVFVRSYCEEGRMEDAESMIVQMVDRGVFPNLVTYNTLIRGY 502

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF--TKLKAFGCKP 210
             +G VS  F     ++   + P+  ++T L++ +  +S    +  ++    +K      
Sbjct: 503 ANLGLVSQAFSTFEVMVGKGWKPNEDSYTVLLRLVVKKSSSDNSVDIWKIADMKDLQVLL 562

Query: 211 NVIT----------YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             IT          YS  I  LCR      A + F  M N N        P+   YT+II
Sbjct: 563 EDITERQLPLAADIYSCFIRCLCRVDRLEEAKHFFMGMQNAN------LTPSEDVYTSII 616

Query: 261 D 261
           D
Sbjct: 617 D 617


>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Vitis vinifera]
          Length = 644

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 92/286 (32%), Positives = 150/286 (52%), Gaps = 8/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFNL+   + K    D  + +F+ +      PD++TY  L++  CK  R+    ++
Sbjct: 170 PNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLL 229

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  + +  CF P +V F  LI GLC +  ++    L   +   GC PN +TY+T+INGLC
Sbjct: 230 LDEMQIEGCF-PSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    A++L + M          C PN VTY T+I+GL K+G       L   ++++ 
Sbjct: 289 LKGKLDKAVSLLDRMVASK------CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 342

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            + +   Y++LI G        EA  L  +M+++G QP++V ++ ++D LC+ GK+DEA 
Sbjct: 343 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAK 402

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            +L  M+ +G  PN  T+S+L+ GF  TG    A  ++  M    C
Sbjct: 403 EILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNC 448



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/315 (30%), Positives = 157/315 (49%), Gaps = 8/315 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK--RLNSTGLFPD 141
           A  P +A  +F  M++       + SFN +   + +   +   L  ++      T + P+
Sbjct: 112 AHLPEKAIELFGRMVDEFQCRRTVRSFNSVLNVIIQEGLFHRALEFYECGVGGKTNISPN 171

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           + ++N++I   CK+G V     V   +      PD   + +L+ GLC E RI EA  L  
Sbjct: 172 VLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVLLLD 231

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           +++  GC P+ +T++ LINGLC+ G  +    L + M      F   C PN VTY TII+
Sbjct: 232 EMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNM------FLKGCVPNEVTYNTIIN 285

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GLC +G +DKA  L  +M      P+ VTY +LI+G        +   LL  + ++G   
Sbjct: 286 GLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHA 345

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +   ++ ++  L K  K +EA  L + M+ +G  PN   +S L+DG C  G+++ AKE+ 
Sbjct: 346 NEYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEIL 405

Query: 382 VSMESMGCKHTVFSY 396
             M + GC    F+Y
Sbjct: 406 CEMVNKGCTPNAFTY 420



 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 154/297 (51%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M  +    P   +FN+L   L K      V  L   +   G  P+  TYN 
Sbjct: 224 DEAVLLLDEM-QIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNT 282

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  C  G++     +L R++ S   P+ V + +LI GL  + R ++   L + L+  G
Sbjct: 283 IINGLCLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERG 342

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N   YSTLI+GL +   +  A+ L+++M          C+PN V Y+ +IDGLC+EG
Sbjct: 343 HHANEYAYSTLISGLFKEEKSEEAMGLWKKMVEKG------CQPNIVVYSALIDGLCREG 396

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+AKE+  +M +K   P+  TY+SLI GF    +  +A  +  EM      P+ + ++
Sbjct: 397 KLDEAKEILCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYS 456

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           V++  LC++GK+ EA  +   M+ RG+ P+   +S+++ G C  G V    +LF  M
Sbjct: 457 VLIHGLCEDGKLREAMMMWTHMLGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEM 513



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 14/313 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+  +T      + D M  ++   P   ++N +   L      D  +SL  R+ ++  
Sbjct: 255 KGDMVRVTK-----LVDNMF-LKGCVPNEVTYNTIINGLCLKGKLDKAVSLLDRMVASKC 308

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TY  LIN   K GR   G  +L  +       +  A+++LI GL  E +  EA  
Sbjct: 309 VPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANEYAYSTLISGLFKEEKSEEAMG 368

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L+ K+   GC+PN++ YS LI+GLCR G    A  +  EM N        C PN  TY++
Sbjct: 369 LWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKG------CTPNAFTYSS 422

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I G  K G   KA  ++ +M   N  P+ + Y+ LIHG C      EA  +   M+ +G
Sbjct: 423 LIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHMLGRG 482

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFSTLMDGFCLTGRVNH 376
           ++PDVV ++ ++  LC  G ++   +L   M+ +  +  P+  T++ L+   C    ++H
Sbjct: 483 LRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQPDVVTYNILLRALCKQNSISH 542

Query: 377 AKELFVSMESMGC 389
           A +L  SM   GC
Sbjct: 543 AIDLLNSMLDRGC 555



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/312 (29%), Positives = 154/312 (49%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  M   +  P   T   L+ G L K    D  + L   +   G FP   T+N+
Sbjct: 189 DRAIEVFREMAIQKCEPDVFTYCTLMDG-LCKEDRIDEAVLLLDEMQIEGCFPSSVTFNV 247

Query: 148 LINCFCKMG---RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LIN  CK G   RV+   +V    L+ C  P+ V + ++I GLC + ++ +A +L  ++ 
Sbjct: 248 LINGLCKKGDMVRVTK--LVDNMFLKGC-VPNEVTYNTIINGLCLKGKLDKAVSLLDRMV 304

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A  C PN +TY TLINGL + G ++  ++L   +             N   Y+T+I GL 
Sbjct: 305 ASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHH------ANEYAYSTLISGLF 358

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KE   ++A  L+ +M +K   P++V Y++LI G C     +EA  +L EM+++G  P+  
Sbjct: 359 KEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMVNKGCTPNAF 418

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T++ ++    K G   +A R+ + M      PN   +S L+ G C  G++  A  ++  M
Sbjct: 419 TYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLREAMMMWTHM 478

Query: 385 ESMGCKHTVFSY 396
              G +  V +Y
Sbjct: 479 LGRGLRPDVVAY 490



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 146/290 (50%), Gaps = 29/290 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ L   L K +  +  + L+K++   G  P++  Y+ LI+  C+ G++     +L  +
Sbjct: 349 AYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEM 408

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +    TP+A  ++SLIKG        +A  ++ ++    C PN I YS LI+GLC  G  
Sbjct: 409 VNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKL 468

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNINP 286
             A+ ++  M       G   +P+ V Y+++I GLC  G V+   +LF +M  ++ +  P
Sbjct: 469 REAMMMWTHM------LGRGLRPDVVAYSSMIHGLCNAGSVEVGLKLFNEMLCQESDSQP 522

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV-----------------I 329
           DVVTYN L+   C  N  + A  LL  M+D+G  PD++T N+                  
Sbjct: 523 DVVTYNILLRALCKQNSISHAIDLLNSMLDRGCNPDLITCNIFLNALREKLNPPQDGREF 582

Query: 330 MDELC----KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           +DEL     K  ++  A++++E+M+ + + PN ST+  ++   C   +V 
Sbjct: 583 LDELVVRLHKRQRIVGAAKIIEVMLQKFLPPNASTWERIIPELCKPKKVQ 632


>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
 gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
          Length = 802

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 104/358 (29%), Positives = 174/358 (48%), Gaps = 58/358 (16%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF I   M+  +   P  ++++ +   L +    +    LF+ + S G+ PD+YTY ILI
Sbjct: 272 AFQIIKVMMG-KGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILI 330

Query: 150 NCFCKMGRVS-------------------------HGFV----------VLGRILRSCFT 174
           + FCK G +                          H ++          +  R++ +   
Sbjct: 331 DSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCP 390

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKA----------FGCK------PNVITYSTL 218
           P+ + +++L+ GLC    I +A  ++TKL            F  K      PNV+TY  L
Sbjct: 391 PNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGAL 450

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+GLC+    + A  L + M + NG     C+PN + Y  +IDG CK G +D A+E+FL+
Sbjct: 451 IDGLCKAHKVVDAQELLDAMLS-NG-----CEPNHIIYDALIDGFCKVGKIDNAQEVFLR 504

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M      P V TY SLI         + A  +L +M++    P+VVT+  ++D LC+ G+
Sbjct: 505 MSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGE 564

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +A +LL +M  +G +PN  T++ L+DG   +G+V+ + +LF+ M + GC     +Y
Sbjct: 565 CQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTY 622



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/332 (26%), Positives = 145/332 (43%), Gaps = 57/332 (17%)

Query: 116 CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
           CL     +D    + K +   G  PD  TY+ +I   C+  +V   F++   +      P
Sbjct: 262 CLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNP 321

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D   +T LI   C    I +A + F ++++ GC  NV+TY+ L++   +      A ++F
Sbjct: 322 DVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKAKQLPQASDIF 381

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM---------------- 279
             M +        C PNT+TY+ ++DGLCK G + KA E++ ++                
Sbjct: 382 NRMIDAG------CPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGK 435

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
              +I P+VVTY +LI G C A+   +A  LL  M+  G +P+ + ++ ++D  CK GK+
Sbjct: 436 HTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKI 495

Query: 340 DEAS-----------------------------------RLLELMILRGVNPNTSTFSTL 364
           D A                                    ++L  M+     PN  T++ +
Sbjct: 496 DNAQEVFLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAM 555

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DG C  G    A +L   ME  GC   V +Y
Sbjct: 556 IDGLCRIGECQKALKLLSMMEEKGCSPNVVTY 587



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 133/280 (47%), Gaps = 8/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   L K         L   + S G  P+   Y+ LI+ FCK+G++ +   V
Sbjct: 442 PNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEV 501

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+ +  + P    +TSLI  +  + R+  A  + +++    C PNV+TY+ +I+GLCR
Sbjct: 502 FLRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCR 561

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL L   M          C PN VTYT +IDGL K G VD + +LF+QM  K  
Sbjct: 562 IGECQKALKLLSMMEEKG------CSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGC 615

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTY  LI+  C A   +EA+ LL EM        +  +  ++    K  K   +  
Sbjct: 616 APNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSK--KFIASLG 673

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LLE +   G  P    +  L+D F   GR+  A EL   M
Sbjct: 674 LLEELESHGTVPIAPVYGLLIDNFSKAGRLEEALELHKEM 713



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 133/304 (43%), Gaps = 37/304 (12%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +   +D  +S   R+      P++ TY  L+  F K  ++     ++  +++    P+
Sbjct: 117 LMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQLGWCKRIINMMMKEGCNPN 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI------- 229
              F SL+   C       A  L  ++   GC P  + Y+  I  +C  G  +       
Sbjct: 177 PSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSIC-GGEELPSPDLLA 235

Query: 230 VALNLFEEM------------AN------GNGKFGVVCK-----------PNTVTYTTII 260
           +A  ++EEM            AN      G GKF +  +           P+T TY+ +I
Sbjct: 236 LAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKGFVPDTSTYSKVI 295

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
             LC+   V+KA  LF +MK   +NPDV TY  LI  FC A    +A     EM   G  
Sbjct: 296 TFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCS 355

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +VVT+  ++    K  ++ +AS +   MI  G  PNT T+S L+DG C  G +  A E+
Sbjct: 356 ANVVTYTALLHAYLKAKQLPQASDIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEV 415

Query: 381 FVSM 384
           +  +
Sbjct: 416 YTKL 419



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/378 (26%), Positives = 148/378 (39%), Gaps = 63/378 (16%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           V   A+L   L+  C SS        T +     F Y    RPS     ++N L   LA 
Sbjct: 6   VAATAALRSSLRRACSSSSH------TADPELKDFGY----RPSG---ATYNALVQVLAT 52

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
               D    + K ++ +G   D +T        CK GR S   V+   I R  F  D V 
Sbjct: 53  AGQMDMGFRVQKEMSESGFCMDKFTVGCFAQALCKEGRWSDALVM---IEREDFKLDTVL 109

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            T +I GL   S   EA +   +++   C PNV+TY TL+ G  +       L   + + 
Sbjct: 110 CTQMISGLMEASLFDEAISFLHRMRCNSCIPNVVTYRTLLTGFLKKKQ----LGWCKRII 165

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           N   K G  C PN   + +++   C       A +L  +M D    P  V YN  I   C
Sbjct: 166 NMMMKEG--CNPNPSLFNSLVHSYCNARDYPYAYKLLKRMADCGCPPGYVAYNIFIGSIC 223

Query: 300 -----------------------------YANDWNEANCL------------LIEMMDQG 318
                                          N  N A CL            +  MM +G
Sbjct: 224 GGEELPSPDLLALAEKVYEEMLASSCVLNKVNTANFARCLCGMGKFDMAFQIIKVMMGKG 283

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PD  T++ ++  LC+  K+++A  L + M   GVNP+  T++ L+D FC  G +  A+
Sbjct: 284 FVPDTSTYSKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQAR 343

Query: 379 ELFVSMESMGCKHTVFSY 396
             F  M S+GC   V +Y
Sbjct: 344 SWFDEMRSIGCSANVVTY 361



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 125/287 (43%), Gaps = 42/287 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L   + K +  D  + +  ++  +   P++ TY  +I+  C++G       +
Sbjct: 512 PTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKL 571

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     +P+ V +T+LI GL    ++  +  LF ++   GC PN +TY  LIN  C 
Sbjct: 572 LSMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCA 631

Query: 225 TG-----HT----------------------------IVALNLFEEMANGNGKFGVVCKP 251
            G     H+                            I +L L EE+ +     G V  P
Sbjct: 632 AGLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFSKKFIASLGLLEELES----HGTV--P 685

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT---YNSLIHGFCYANDWNEAN 308
               Y  +ID   K G +++A EL  +M + + + ++ +   Y SLI   C A+   +A 
Sbjct: 686 IAPVYGLLIDNFSKAGRLEEALELHKEMMELSSSLNITSKDMYTSLIQALCLASQLEKAF 745

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            L  E+  +GV P++  F  ++  L K  K +EA +L   +   GVN
Sbjct: 746 ELYSEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGVN 792



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 5/223 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +   P + ++  L   L K+   D  L LF ++++ G  P+  TY +LIN  C  G
Sbjct: 574 MMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAAG 633

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     +L  + ++ +      + S+++G     + + +  L  +L++ G  P    Y 
Sbjct: 634 LLDEAHSLLSEMKQTYWPKYLQGYCSVVQGF--SKKFIASLGLLEELESHGTVPIAPVYG 691

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+   + G    AL L +EM   +    +  K     YT++I  LC    ++KA EL+
Sbjct: 692 LLIDNFSKAGRLEEALELHKEMMELSSSLNITSKD---MYTSLIQALCLASQLEKAFELY 748

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            ++  K + P++  +  LI G    N WNEA  L   + D+GV
Sbjct: 749 SEITRKGVVPELSVFVCLIKGLIKVNKWNEALQLCYSICDEGV 791


>gi|125563733|gb|EAZ09113.1| hypothetical protein OsI_31378 [Oryza sativa Indica Group]
          Length = 618

 Score =  165 bits (417), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 160/310 (51%), Gaps = 10/310 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P+EA  +F  +  +    P L + N +   L K      V  LF  +   G+ P + TYN
Sbjct: 122 PDEALSVFGRLREL----PALPACNAILDGLVKAHMLARVWELFDEMLGRGMVPSVVTYN 177

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LIN     G V+  + V  +++     P+ V +T++I  LC E  I +A  LF ++K  
Sbjct: 178 TLINACRHQGDVAKAWEVWDQMVARRIDPNVVTYTTMIYALCEEDCIGDAEGLFLEMKEA 237

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +PN+ TY+ L++   +  +   AL  + ++     K G+V  PN V +TT+IDGLCK 
Sbjct: 238 GMRPNLYTYNALMSSHFKRDNIKHALVFYYDLL----KCGLV--PNDVIFTTLIDGLCKA 291

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             + +AK +FL M    + P V  YNSLIHG   +    EA     E++ + ++PD  T 
Sbjct: 292 NRITEAKNIFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKELRPDEFTC 351

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           ++++  LC  G+M  A+R LE+M   G+  N + ++ L+D +C +G ++ A      M  
Sbjct: 352 SIVVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSE 411

Query: 387 MGCKHTVFSY 396
           +G +  V +Y
Sbjct: 412 VGVEPNVVTY 421



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 93/310 (30%), Positives = 154/310 (49%), Gaps = 12/310 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD+      +A+ ++D M+  R  P  +T   +++  L +         LF  +   G+
Sbjct: 186 QGDVA-----KAWEVWDQMVARRIDPNVVTYTTMIYA-LCEEDCIGDAEGLFLEMKEAGM 239

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+LYTYN L++   K   + H  V    +L+    P+ V FT+LI GLC  +RI EA  
Sbjct: 240 RPNLYTYNALMSSHFKRDNIKHALVFYYDLLKCGLVPNDVIFTTLIDGLCKANRITEAKN 299

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F  +  +   P V  Y++LI+G  R+G+   AL  F+E+           +P+  T + 
Sbjct: 300 IFLDMPRYEVAPTVPVYNSLIHGAFRSGYAQEALAFFQEIIRKE------LRPDEFTCSI 353

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ GLC  G +  A      M+   I  +   YN LI  +C + + +EA      M + G
Sbjct: 354 VVRGLCDGGQMQVATRFLEVMQQSGIALNAAAYNVLIDEYCKSGNLDEALVTCTRMSEVG 413

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V+P+VVT++ ++D   KNG+M+ A  +   M+ +GV PN  T++ L+ G    G ++ A 
Sbjct: 414 VEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKGVEPNVVTYTALIHGHAKNGDMDAAF 473

Query: 379 ELFVSMESMG 388
            L   ME  G
Sbjct: 474 WLQKEMEEKG 483



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/275 (28%), Positives = 125/275 (45%), Gaps = 13/275 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F  ++     P   T   ++ G L             + +  +G+  +   YN+
Sbjct: 330 QEALAFFQEIIRKELRPDEFTCSIVVRG-LCDGGQMQVATRFLEVMQQSGIALNAAAYNV 388

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CK G +    V   R+      P+ V ++SLI G      +  A A++T++ A G
Sbjct: 389 LIDEYCKSGNLDEALVTCTRMSEVGVEPNVVTYSSLIDGHSKNGEMEIAMAIYTEMVAKG 448

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PNV+TY+ LI+G  + G    A  L +EM    G +      N +T + ++DGLC+E 
Sbjct: 449 VEPNVVTYTALIHGHAKNGDMDAAFWLQKEMEE-KGIYS-----NAITVSVLVDGLCREN 502

Query: 268 FVDKAKELFLQ---MKDKNINPDV---VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            V  A    ++    K    NP +   VTY +LI+G      +NEA      M D G+ P
Sbjct: 503 RVQDAVRFIMEYSGQKKSEKNPSIANSVTYMTLIYGLYIDGQYNEACHFFSCMRDSGMVP 562

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           D  T+ +++  LC  G +  A  L   M+  GV P
Sbjct: 563 DRFTYTLVIRGLCMLGYVLNAMMLYADMVKVGVKP 597


>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 726

 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  +   L K K  + V  L +R+ N  GLFPD  TYN+LI+   K G      
Sbjct: 264 PPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEAL 323

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             L       F  D V +++++   C   R+ EA  +  ++ + GC+P+V+TYST+++G 
Sbjct: 324 EFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGF 383

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A  + + M   +      CKPNTVT+T +++GLCK G   +A EL  + +++
Sbjct: 384 CRIGELDQARKMMKHMYKND------CKPNTVTHTALLNGLCKVGKTSEAWELLNKSEEE 437

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P  +TY+ ++HGF       E+  ++++M+ +G  P  V  N+++  LCK+ K  EA
Sbjct: 438 WWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEA 497

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              +E    +G   N   F+T++ GF   G +  A  L   M
Sbjct: 498 KDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 539



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 5/273 (1%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            F  L    ++     + + +   +   G  PD+   N+ +N     GRV        R+
Sbjct: 164 QFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERM 223

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            R    PD   +  LIKGLC   R+++A  +   +   GC P+ I+Y T+++ LC+    
Sbjct: 224 RRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKRV 283

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                L + M N  G F     P+ VTY  +I GL K G  D+A E   + + K    D 
Sbjct: 284 EEVRGLLQRMRNDAGLF-----PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDE 338

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V Y++++H FC      EA  ++ EM+ +G QPDVVT++ ++D  C+ G++D+A ++++ 
Sbjct: 339 VGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKH 398

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           M      PNT T + L++G C  G+ + A EL 
Sbjct: 399 MYKNDCKPNTVTHTALLNGLCKVGKTSEAWELL 431



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 144/285 (50%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P ++  N+    L      D  L   +R+   G+ PD+YTYN LI   C   RV     +
Sbjct: 195 PDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEM 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLC 223
           +G +L++   PD +++ +++  LC E R+ E   L  +++   G  P+ +TY+ LI+GL 
Sbjct: 255 IGVMLQNGCPPDKISYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLA 314

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + GH   AL    E  +   +F V    + V Y+ I+   C  G + +AKE+  +M  K 
Sbjct: 315 KHGHADEALEFLRE--SEGKRFRV----DEVGYSAIVHSFCLNGRMAEAKEIVGEMISKG 368

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVTY++++ GFC   + ++A  ++  M     +P+ VT   +++ LCK GK  EA 
Sbjct: 369 CQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAW 428

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            LL         P+  T+S +M GF   G++  + ++ V M   G
Sbjct: 429 ELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKG 473



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 163/353 (46%), Gaps = 22/353 (6%)

Query: 41  NEPSDPTTTAKLKESLRLTV--KDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYML 98
            E   P   A+L+  LR+    + RA L        ++  +GD+      E F   D   
Sbjct: 72  RESWSPKLEAQLRHLLRVLSPPQVRAVL--------RAQARGDVRRAF--EFFRWADRQW 121

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             R +P     F+ +   L+ T+ +D    + + +   G+      +  L+  + + G++
Sbjct: 122 RYRHAP---EVFDEMLSLLSNTRLHDPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKL 178

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                VL  + +    PD       +  L    R+ +A     +++  G +P+V TY+ L
Sbjct: 179 RSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCL 238

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I GLC     + A+ +   M   NG     C P+ ++Y T++  LCKE  V++ + L  +
Sbjct: 239 IKGLCGARRVVDAMEMIGVMLQ-NG-----CPPDKISYYTVMSFLCKEKRVEEVRGLLQR 292

Query: 279 MK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           M+ D  + PD VTYN LIHG       +EA   L E   +  + D V ++ I+   C NG
Sbjct: 293 MRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNG 352

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +M EA  ++  MI +G  P+  T+ST++DGFC  G ++ A+++   M    CK
Sbjct: 353 RMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCK 405



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 75/238 (31%), Positives = 124/238 (52%), Gaps = 6/238 (2%)

Query: 135 STGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIM 194
           S G  PD+ TY+ +++ FC++G +     ++  + ++   P+ V  T+L+ GLC   +  
Sbjct: 366 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTS 425

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
           EA  L  K +     P+ ITYS +++G  R G    + ++  +M    G F     P TV
Sbjct: 426 EAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQ-KGFF-----PTTV 479

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
               +I  LCK+    +AK+   Q + K    +VV + ++IHGF    D   A  L+ +M
Sbjct: 480 EINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDM 539

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
                 PDVVT+ V++D L K G++ EA+ L+E M+ RGV P   T+ T++  +C  G
Sbjct: 540 YLSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKG 597



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 135/365 (36%), Gaps = 97/365 (26%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N+L   LAK  H D  L   +         D   Y+ +++ FC  GR++    +
Sbjct: 301 PDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEI 360

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +G ++     PD V +++++ G C    + +A  +   +    CKPN +T++ L+NGLC+
Sbjct: 361 VGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCK 420

Query: 225 TGHTIVALNLF----EEMA--------------NGNGKFGVVCK-----------PNTVT 255
            G T  A  L     EE                   GK    C            P TV 
Sbjct: 421 VGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVE 480

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN---------- 305
              +I  LCK+    +AK+   Q + K    +VV + ++IHGF    D            
Sbjct: 481 INLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHGFSRQGDLESALSLMDDMY 540

Query: 306 -------------------------EANCLLIEMMDQGVQPDVVTF-------------- 326
                                    EA  L+ +M+++GV P  VT+              
Sbjct: 541 LSNRHPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLE 600

Query: 327 -------------------NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                              N ++++LC  GK++EA  LL  ++      +  T   LM+ 
Sbjct: 601 DLLNLLEKMLARQEMKSAYNQVVEKLCAFGKLNEAYSLLYKILRTASVRDAQTCHILMES 660

Query: 368 FCLTG 372
           F   G
Sbjct: 661 FLNRG 665



 Score = 91.3 bits (225), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 65/277 (23%), Positives = 129/277 (46%), Gaps = 8/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     +    D    + K +      P+  T+  L+N  CK+G+ S  + +
Sbjct: 371 PDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGLCKVGKTSEAWEL 430

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +     +TP  + ++ ++ G   E ++ E+  +  ++   G  P  +  + LI+ LC+
Sbjct: 431 LNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCK 490

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A +  E+  +        C  N V +TT+I G  ++G ++ A  L   M   N 
Sbjct: 491 DRKPAEAKDFMEQCQSKG------CTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNR 544

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDVVTY  ++          EA  L+ +M+++GV P  VT+  ++   C+ G +++   
Sbjct: 545 HPDVVTYTVVVDALGKKGRLKEATGLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLN 604

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LLE M+ R      S ++ +++  C  G++N A  L 
Sbjct: 605 LLEKMLAR--QEMKSAYNQVVEKLCAFGKLNEAYSLL 639



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 122/300 (40%), Gaps = 32/300 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +  +M      P  +T   LL G L K         L  +       P   TY++
Sbjct: 390 DQARKMMKHMYKNDCKPNTVTHTALLNG-LCKVGKTSEAWELLNKSEEEWWTPSDITYSV 448

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ F + G++     V+ ++L+  F P  V    LI  LC + +  EA     + ++ G
Sbjct: 449 VMHGFRREGKLKESCDVVVQMLQKGFFPTTVEINLLIHALCKDRKPAEAKDFMEQCQSKG 508

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVVCK-- 250
           C  NV+ ++T+I+G  R G    AL+L ++M   N               GK G + +  
Sbjct: 509 CTINVVNFTTVIHGFSRQGDLESALSLMDDMYLSNRHPDVVTYTVVVDALGKKGRLKEAT 568

Query: 251 ------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                       P  VTY T+I   C++G ++    L  +M  +        YN ++   
Sbjct: 569 GLVEKMLNRGVLPTPVTYRTVIHRYCEKGNLEDLLNLLEKMLARQEMKS--AYNQVVEKL 626

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C     NEA  LL +++      D  T +++M+     G   +A  +   M  R + P+ 
Sbjct: 627 CAFGKLNEAYSLLYKILRTASVRDAQTCHILMESFLNRGLGLQAYNVACRMFRRNLIPDV 686



 Score = 51.2 bits (121), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 54/127 (42%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A+ +   M  + +      +  L+  +  A     A  +L  M   G  PD+   N+ 
Sbjct: 144 DPARRVVRLMIRRGVRRGTEQFAQLMLSYSRAGKLRSAMRVLHLMQKDGCAPDISICNMA 203

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ L   G++D+A    E M   GV P+  T++ L+ G C   RV  A E+   M   GC
Sbjct: 204 VNVLVVAGRVDKALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGC 263

Query: 390 KHTVFSY 396
                SY
Sbjct: 264 PPDKISY 270


>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
 gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 670

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 144/289 (49%), Gaps = 6/289 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++NL+   L K    D  +  F+ +      PD++TY+ L+N  CK  RV     +
Sbjct: 196 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 255

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ V F  LI  L     +  AA L   +   GC PN +TY+TLI+GLC 
Sbjct: 256 LDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 315

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL+L E+M +        C PN VTY TII+GL K+   +    + + M+++  
Sbjct: 316 KGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 369

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +   Y+SLI G         A  L  EM ++G +P+VV +   +D LC++ K DEA  
Sbjct: 370 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 429

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           +L+ M+ +G  PN  T+S+LM GF   G    A  ++  M S   +H V
Sbjct: 430 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNV 478



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M      P P+T FN+L   L+K         L   +   G  P+  TYN 
Sbjct: 250 DEAVFLLDEMQAEGCLPNPVT-FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNT 308

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  G++     +L +++ S   P+ V + ++I GL  + R  +   +   ++  G
Sbjct: 309 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 368

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K N   YS+LI+GL + G +  A+ L++EMA         CKPN V Y   IDGLC++ 
Sbjct: 369 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG------CKPNVVVYGAFIDGLCRDE 422

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A+++  +M  K   P+  TY+SL+ GF    D  +A  +  EMM Q ++ +VV  +
Sbjct: 423 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 482

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           V+++ LC++G++ EA  +   M+  G+ P+   +S+++ G C  G V+   +LF  M+
Sbjct: 483 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 540



 Score =  135 bits (341), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           T F L+F    K       ++ F R+ N       + ++N ++N   + G  S+ F    
Sbjct: 125 TIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYL 184

Query: 167 RILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +  +    F P+ + +  +IK LC   +I  A   F ++    C P+V TYSTL+NGLC
Sbjct: 185 HVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLC 244

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           +      A+ L +EM A G       C PN VT+  +ID L K G + +A +L   M  K
Sbjct: 245 KERRVDEAVFLLDEMQAEG-------CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK 297

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+ VTYN+LIHG C     ++A  LL +M+     P+ VT+  I++ L K  + ++ 
Sbjct: 298 GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDG 357

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +L  M  RG   N   +S+L+ G    G+  +A  L+  M   GCK  V  Y
Sbjct: 358 VHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVY 411



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 142/290 (48%), Gaps = 29/290 (10%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ L   L K    +  + L+K +   G  P++  Y   I+  C+  +      +L  +L
Sbjct: 376 YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 435

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
              F P+A  ++SL+KG   +    +A  ++ ++ +   + NV+  S L+NGLC +G   
Sbjct: 436 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLR 495

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK--DKNINPD 287
            AL ++  M       G   KP+ V Y+++I GLC  G VDK  +LF +M+  +    PD
Sbjct: 496 EALTVWTHM------LGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPD 549

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL------CKNGK--M 339
           VVTYN L +  C  ++   A  LL  M+D+G  PD +T N+ ++ L       ++G+  +
Sbjct: 550 VVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFL 609

Query: 340 DE-------------ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           DE             A R++E M+LR + P  ST+S ++   C   R+  
Sbjct: 610 DELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRE 659


>gi|297800058|ref|XP_002867913.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313749|gb|EFH44172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 724

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/300 (33%), Positives = 162/300 (54%), Gaps = 14/300 (4%)

Query: 93  IFDYMLNMRPSPPPLTSFNLL-FGCL--AKTKHYDTVLS-LFKRLNSTGLFPDLYTYNIL 148
           +FD M ++R   P  +SF L+  GC    K +  D  LS + +R    G  PD  T  ++
Sbjct: 227 VFDEM-SVRGVCPDSSSFKLMVIGCFRDGKIQEADRWLSGMIQR----GFIPDNATCTLI 281

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C+ G V+       +++   F P+ + FTSLI GLC +  I +A  +  ++   G 
Sbjct: 282 LSALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 341

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPNV T++ LI+GLC+ G T  A  LF ++   +     + KPN  TYT++I G CKE  
Sbjct: 342 KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----IYKPNVHTYTSMIGGYCKEDK 396

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A+ LF +MK++ + P+V TY +LI+G C A +++ A  L+  M D+G +P++ T+N 
Sbjct: 397 LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNA 456

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK  +  EA  LL      G+  +  T++ L+   C    +  A   F  M   G
Sbjct: 457 VIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTG 516



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/314 (32%), Positives = 159/314 (50%), Gaps = 15/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +   M N   SP  +T  N +     ++   D   ++F  ++  G+ PD  ++ +
Sbjct: 187 NEAVGMVMDMQNQGLSPSSIT-MNCVLEIAIESGLIDYAENVFDEMSVRGVCPDSSSFKL 245

Query: 148 L-INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           + I CF + G++      L  +++  F PD    T ++  LC    +  A   F K+   
Sbjct: 246 MVIGCF-RDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWYFRKMIDL 304

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KPN+I +++LI+GLC+ G    A  + EEM   NG      KPN  T+T +IDGLCK 
Sbjct: 305 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG-----WKPNVYTHTALIDGLCKR 358

Query: 267 GFVDKAKELFLQMKDKNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           G+ +KA  LFL++   +I  P+V TY S+I G+C  +  N A  L   M +QG+ P+V T
Sbjct: 359 GWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 418

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF---- 381
           +  +++  CK G  D A  L+ LM   G  PN  T++ ++D  C   R   A EL     
Sbjct: 419 YTTLINGHCKAGNFDRAYELMNLMDDEGFRPNIYTYNAVIDSLCKKSRAPEAYELLNKAF 478

Query: 382 -VSMESMGCKHTVF 394
              +E+ G  +T+ 
Sbjct: 479 SCGLEADGVTYTIL 492



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A   F  M+++    P L +F  L   L K         + + +   G  P++YT+  
Sbjct: 292 NRAIWYFRKMIDL-GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 350

Query: 148 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK G     F +  +++RS  + P+   +TS+I G C E ++  A  LF+++K  
Sbjct: 351 LIDGLCKRGWTEKAFRLFLKLVRSDIYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 410

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNV TY+TLING C+ G+   A  L   M +         +PN  TY  +ID LCK+
Sbjct: 411 GLFPNVNTYTTLINGHCKAGNFDRAYELMNLMDDEG------FRPNIYTYNAVIDSLCKK 464

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
               +A EL  +     +  D VTY  LI   C  +D  +A      M   G + D+   
Sbjct: 465 SRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLN 524

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++   C+  KM E+ RL +L++  G+ P   T+++++ G+C  G  + A + F +M+ 
Sbjct: 525 NILIAAFCRQKKMKESERLFQLVVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKR 584

Query: 387 MGCKHTVFSY 396
            GC    F+Y
Sbjct: 585 HGCVPDSFTY 594



 Score = 83.2 bits (204), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/231 (26%), Positives = 109/231 (47%), Gaps = 17/231 (7%)

Query: 182 SLIKGLCAESRIMEA------AALFTKLKAFGCKPNVITYSTLI-NGLCRTGHTIVA--L 232
           +++  L +ES  M A      A  F K + F  +  ++T  +LI NG  +  H ++   L
Sbjct: 119 TVVASLASESGSMVALCFFYWAVGFEKFRHF-MRLYLVTADSLIANGNLQKAHEVMRCML 177

Query: 233 NLFEEMANGNGKFGVV-------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
             F E+   N   G+V         P+++T   +++   + G +D A+ +F +M  + + 
Sbjct: 178 RNFSEIGRLNEAVGMVMDMQNQGLSPSSITMNCVLEIAIESGLIDYAENVFDEMSVRGVC 237

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD  ++  ++ G        EA+  L  M+ +G  PD  T  +I+  LC+NG ++ A   
Sbjct: 238 PDSSSFKLMVIGCFRDGKIQEADRWLSGMIQRGFIPDNATCTLILSALCENGLVNRAIWY 297

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              MI  G  PN   F++L+DG C  G +  A E+   M   G K  V+++
Sbjct: 298 FRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 348



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 102/248 (41%), Gaps = 12/248 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++ +L     K       L+ F R+N TG   D+   NILI  FC+  ++     +   
Sbjct: 487 VTYTILIQEQCKQSDIKQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQL 546

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P    +TS+I G C E     A   F  +K  GC P+  TY +LI+GLC+   
Sbjct: 547 VVSLGLVPTKETYTSMISGYCKEGDFDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 606

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF-LQMKDKNINP 286
              A  L+E M +          P  VT  T+    CK    D A  +  L+  DK +  
Sbjct: 607 VDEACKLYEAMIDRG------LSPPEVTRVTLAYEYCKRN--DSASAMIVLEPLDKKLW- 657

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            + T  +L+   C       A     +++++    D VT         ++GK +  + L 
Sbjct: 658 -IRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVADLT 716

Query: 347 ELMILRGV 354
           E  I RGV
Sbjct: 717 E-RISRGV 723



 Score = 38.9 bits (89), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 61/151 (40%), Gaps = 7/151 (4%)

Query: 96  YMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           Y  NM+     P   T  +L+ G L K    D    L++ +   GL P   T   L   +
Sbjct: 578 YFHNMKRHGCVPDSFTYGSLISG-LCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEY 636

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK    +   +VL  + +  +        +L++ LC+E ++  AA  F KL       + 
Sbjct: 637 CKRNDSASAMIVLEPLDKKLWIR---TVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADR 693

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           +T +        +G   +  +L E ++ G G
Sbjct: 694 VTLAAFTTACSESGKNNLVADLTERISRGVG 724


>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Cucumis sativus]
          Length = 646

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/289 (33%), Positives = 144/289 (49%), Gaps = 6/289 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++NL+   L K    D  +  F+ +      PD++TY+ L+N  CK  RV     +
Sbjct: 172 PNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFL 231

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ V F  LI  L     +  AA L   +   GC PN +TY+TLI+GLC 
Sbjct: 232 LDEMQAEGCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCL 291

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL+L E+M +        C PN VTY TII+GL K+   +    + + M+++  
Sbjct: 292 KGKLDKALSLLEKMVSSK------CVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQ 345

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +   Y+SLI G         A  L  EM ++G +P+VV +   +D LC++ K DEA  
Sbjct: 346 KANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAED 405

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           +L+ M+ +G  PN  T+S+LM GF   G    A  ++  M S   +H V
Sbjct: 406 ILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNV 454



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/298 (30%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M      P P+T FN+L   L+K         L   +   G  P+  TYN 
Sbjct: 226 DEAVFLLDEMQAEGCLPNPVT-FNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNT 284

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  G++     +L +++ S   P+ V + ++I GL  + R  +   +   ++  G
Sbjct: 285 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERG 344

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            K N   YS+LI+GL + G +  A+ L++EMA         CKPN V Y   IDGLC++ 
Sbjct: 345 QKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKG------CKPNVVVYGAFIDGLCRDE 398

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+A+++  +M  K   P+  TY+SL+ GF    D  +A  +  EMM Q ++ +VV  +
Sbjct: 399 KPDEAEDILQEMLSKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCS 458

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           V+++ LC++G++ EA  +   M+  G+ P+   +S+++ G C  G V+   +LF  M+
Sbjct: 459 VLLNGLCESGRLREALTVWTHMLGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQ 516



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 141/294 (47%), Gaps = 12/294 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           T F L+F    K       ++ F R+ N       + ++N ++N   + G  S+ F    
Sbjct: 101 TIFILIFKACGKAHLPGEAVNFFHRMANDLHCKQTVKSFNSVLNVIIQEGDFSYAFKFYL 160

Query: 167 RILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +  +    F P+ + +  +IK LC   +I  A   F ++    C P+V TYSTL+NGLC
Sbjct: 161 HVFGANSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLC 220

Query: 224 RTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           +      A+ L +EM A G       C PN VT+  +ID L K G + +A +L   M  K
Sbjct: 221 KERRVDEAVFLLDEMQAEG-------CLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLK 273

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+ VTYN+LIHG C     ++A  LL +M+     P+ VT+  I++ L K  + ++ 
Sbjct: 274 GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAEDG 333

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +L  M  RG   N   +S+L+ G    G+  +A  L+  M   GCK  V  Y
Sbjct: 334 VHILMSMEERGQKANEYIYSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVY 387



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/290 (28%), Positives = 142/290 (48%), Gaps = 29/290 (10%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           ++ L   L K    +  + L+K +   G  P++  Y   I+  C+  +      +L  +L
Sbjct: 352 YSSLISGLFKEGKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEML 411

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
              F P+A  ++SL+KG   +    +A  ++ ++ +   + NV+  S L+NGLC +G   
Sbjct: 412 SKGFLPNAFTYSSLMKGFFKKGDSQKAILVWKEMMSQDMRHNVVCCSVLLNGLCESGRLR 471

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK--DKNINPD 287
            AL ++  M       G   KP+ V Y+++I GLC  G VDK  +LF +M+  +    PD
Sbjct: 472 EALTVWTHM------LGEGLKPDVVAYSSMIKGLCDVGSVDKGLKLFYEMQCQEPKSRPD 525

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL------CKNGK--M 339
           VVTYN L +  C  ++   A  LL  M+D+G  PD +T N+ ++ L       ++G+  +
Sbjct: 526 VVTYNILFNALCRQDNLTRAIDLLNSMLDEGCDPDSLTCNIFLETLRERINPPQDGRLFL 585

Query: 340 DE-------------ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           DE             A R++E M+LR + P  ST+S ++   C   R+  
Sbjct: 586 DELVVRLLKRERKLSALRIVEEMLLRFLPPEPSTWSRVIQRTCKPKRIRE 635


>gi|410109925|gb|AFV61042.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hermannioides]
          Length = 417

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 125 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 184

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 185 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGRC 244

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++ M + +        P+ +TY T+I GLCK+G + +A +L  +M  K 
Sbjct: 245 KNGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKG 298

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 299 LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 358

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+   + P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 359 KMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTY 411



 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 103 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 162

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 163 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 222

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G++  PN VT+TT+IDG CK G VD A E++ +M  +++ PD++TYN+LI+
Sbjct: 223 EMLVK----GLI--PNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIY 276

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 277 GLCKKGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRL 336

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+  K    +Y
Sbjct: 337 DDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTY 376



 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 143/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 161 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 220

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 221 FDEMLVKGLIPNGVTFTTLIDGRCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 280

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 281 KGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENI 334

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+   ++PD  T+ +I++E CK G + + S+
Sbjct: 335 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSK 394

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 395 LLKEMQRDGHAPSVVTYNVLMNG 417



 Score = 60.5 bits (145), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 44/184 (23%)

Query: 73  RCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
           RCK+ G+ D+       A  I+  ML+    P  +T   L++G L K         L   
Sbjct: 243 RCKN-GRVDL-------AMEIYKRMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHDLIDE 293

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           ++  GL PD +TY  LI+  CK G +   F    R+++     D VA+T+LI GLC E R
Sbjct: 294 MSMKGLKPDKFTYTTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGR 353

Query: 193 IMEA-----------------------------------AALFTKLKAFGCKPNVITYST 217
            ++A                                   + L  +++  G  P+V+TY+ 
Sbjct: 354 SVDAEKMLREMLSVDLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTYNV 413

Query: 218 LING 221
           L+NG
Sbjct: 414 LMNG 417


>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
 gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
          Length = 428

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 88/225 (39%), Positives = 126/225 (56%), Gaps = 7/225 (3%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F  DA  + +LI GLC   +   A  L   + A G   +V+TY+TLI+GLC++G    A 
Sbjct: 6   FRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQ 65

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L ++MA+        C PN VTYT +IDGLCK      A +   +M      PD+VTYN
Sbjct: 66  ALLQKMADAG------CAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYN 119

Query: 293 SLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           SLIHG C AN  ++A  +L E+M + G  PDVVT+N  +  LCK GK+D+   +LE M  
Sbjct: 120 SLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDR 179

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G++P+  TF +++ G C   R++ A ++F  M   GC     +Y
Sbjct: 180 GGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTY 224



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 148/287 (51%), Gaps = 5/287 (1%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L K +     L L   + + G    + TY  LI+  CK G +     +L ++ 
Sbjct: 13  YNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMA 72

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +   P+ V +T+LI GLC   R  +A     ++   GC+P+++TY++LI+GLC      
Sbjct: 73  DAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMD 132

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  + +E+   +G+      P+ VTY T I GLCK G +DK  E+  +M    I+PDVV
Sbjct: 133 DAGLVLQELMIESGRI-----PDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVV 187

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+ S+I G C AN  ++A  +   M+++G  PD +T+++++D L +  ++D    +LE M
Sbjct: 188 TFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHM 247

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  G    ++T++ L+      G +  A   +      GC   V+++
Sbjct: 248 VKSGHYALSATYAPLIHALIRAGDIESASWAYEQAMEAGCVMEVYTH 294



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/315 (29%), Positives = 160/315 (50%), Gaps = 8/315 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A  P++A      ML     P  +T  +L+ G     +  D  L L + +  +G  PD+ 
Sbjct: 93  ARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVV 152

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TYN  I+  CK G++  G  +L  + R   +PD V F S+I GLC  +RI +A  +F  +
Sbjct: 153 TYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGM 212

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              GC P+ +TYS +++ L R         + E M   +G + +     + TY  +I  L
Sbjct: 213 LERGCVPDSLTYSIMLDNLSRANRLDTVEEVLEHMVK-SGHYAL-----SATYAPLIHAL 266

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            + G ++ A   + Q  +     +V T+N+ I   C +  +  A  +L+ M++ G  P++
Sbjct: 267 IRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNL 326

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           +++N ++D LCK+G +D+A +L   M+  G   P+   F+TL+ GFC  GR++ A++L  
Sbjct: 327 LSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLSQAQQLLK 386

Query: 383 SMESMG-CKHTVFSY 396
            M++   C   V +Y
Sbjct: 387 EMKAKNICVPDVVTY 401



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/250 (34%), Positives = 130/250 (52%), Gaps = 9/250 (3%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D   YN LI   CK  +  H   +L  +  + +    V +T+LI GLC    +  A AL 
Sbjct: 9   DAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGDLDAAQALL 68

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            K+   GC PNV+TY+ LI+GLC+      A+   + M          C+P+ VTY ++I
Sbjct: 69  QKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSG------CEPDLVTYNSLI 122

Query: 261 DGLCKEGFVDKAKELFLQ--MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            GLC    +D A  L LQ  M +    PDVVTYN+ I G C A   ++   +L EM   G
Sbjct: 123 HGLCMANRMDDAG-LVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGG 181

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           + PDVVTF  I+  LCK  ++D+A ++ + M+ RG  P++ T+S ++D      R++  +
Sbjct: 182 ISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNLSRANRLDTVE 241

Query: 379 ELFVSMESMG 388
           E+   M   G
Sbjct: 242 EVLEHMVKSG 251



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/319 (29%), Positives = 146/319 (45%), Gaps = 42/319 (13%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++  L   L K+   D   +L +++   G  P++ TY  LI+  CK  R       + 
Sbjct: 45  VVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVK 104

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLCRT 225
           R+LRS   PD V + SLI GLC  +R+ +A  +  +L    G  P+V+TY+T I+GLC+ 
Sbjct: 105 RMLRSGCEPDLVTYNSLIHGLCMANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKA 164

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G     L + EEM  G         P+ VT+ +II GLCK   +D A ++F  M ++   
Sbjct: 165 GKLDKGLEMLEEMDRGG------ISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCV 218

Query: 286 PDVVTYN-----------------------------------SLIHGFCYANDWNEANCL 310
           PD +TY+                                    LIH    A D   A+  
Sbjct: 219 PDSLTYSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAGDIESASWA 278

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             + M+ G   +V T N  +  LC++GK   A  +L  MI  G  PN  +++ ++DG C 
Sbjct: 279 YEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCK 338

Query: 371 TGRVNHAKELFVSMESMGC 389
           +G V+ A +L   M   GC
Sbjct: 339 SGNVDDAWKLSRKMLDSGC 357



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 7/232 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF +F  ML     P  LT ++++   L++    DTV  + + +  +G +    TY  
Sbjct: 203 DDAFQVFKGMLERGCVPDSLT-YSIMLDNLSRANRLDTVEEVLEHMVKSGHYALSATYAP 261

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   + G +        + + +    +     + I  LC   +   A  +   +   G
Sbjct: 262 LIHALIRAGDIESASWAYEQAMEAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESG 321

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN+++Y+ +I+GLC++G+   A  L  +M +        CKP+ + + T+I G CK G
Sbjct: 322 SLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSG-----CCKPDVIFFNTLISGFCKAG 376

Query: 268 FVDKAKELFLQMKDKNI-NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
            + +A++L  +MK KNI  PDVVTYN++I G        +A  LL EM   G
Sbjct: 377 RLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLEEMQAVG 428



 Score = 74.7 bits (182), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 58/118 (49%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  ++   D   YN+LI G C A     A  LL  M   G    VVT+  ++D LCK+G 
Sbjct: 1   MASRHFRLDAAIYNTLIAGLCKARKPRHALELLHVMAANGYDASVVTYTTLIDGLCKSGD 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +D A  LL+ M   G  PN  T++ L+DG C   R + A +    M   GC+  + +Y
Sbjct: 61  LDAAQALLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTY 118


>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 630

 Score =  164 bits (416), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 96/308 (31%), Positives = 157/308 (50%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +++FN+L   L K       + + + ++S GL PD  T+  L+  F + G +   F V
Sbjct: 191 PDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQGFIEEGNMDGAFRV 250

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA----------------LFTKLKAFGC 208
             ++L +      V    L+ G C E RI EA +                L+ ++K  GC
Sbjct: 251 KEQMLDAGCPVTNVTVNVLVHGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGC 310

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+  TY+ LI+ LC  G    AL L  EM          C  N +TY T+IDG CK   
Sbjct: 311 QPDEFTYNMLIDSLCYRGKLQEALGLLREMEISG------CARNVITYNTLIDGFCKNKK 364

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A+E+F QM+ + ++ + VTYN+LI G C +    EA  L+ +M+ +G++PD  T+N 
Sbjct: 365 IEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNS 424

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C+ G + +A+ +++ M   G  P+  T+ TL+ G C  GRV  A  L  S++  G
Sbjct: 425 MLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKG 484

Query: 389 CKHTVFSY 396
              T  +Y
Sbjct: 485 MVLTPHAY 492



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/283 (30%), Positives = 137/283 (48%), Gaps = 12/283 (4%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +++ M N    P   T +N+L   L         L L + +  +G   ++ TYN LI
Sbjct: 298 AIELYNEMKNKGCQPDEFT-YNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLI 356

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + FCK  ++     +  ++     + ++V + +LI GLC   R+ EAA L  ++   G K
Sbjct: 357 DGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLK 416

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+  TY++++   CR G    A ++ + M + NG     C+P+ VTY T+I GLCK G V
Sbjct: 417 PDKFTYNSMLTYFCREGDIQKAADIVQTMTS-NG-----CEPDIVTYGTLIGGLCKAGRV 470

Query: 270 DKAKELF--LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           + A  L   +Q+K   + P    YN +I          EA  L  EM ++G  PD  T+ 
Sbjct: 471 EVASRLLRSIQLKGMVLTPH--AYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYK 528

Query: 328 VIMDELCKNG-KMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++   L  +G  + EA   +  MI +G  P  S+F  L +G C
Sbjct: 529 IVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLC 571



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 127/264 (48%), Gaps = 7/264 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            + L+  + + G  PD +TYN+LI+  C  G++     +L  +  S    + + + +LI 
Sbjct: 298 AIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLID 357

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C   +I EA  +F +++  G   N +TY+TLI+GLC++     A  L ++M       
Sbjct: 358 GFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEG--- 414

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
               KP+  TY +++   C+EG + KA ++   M      PD+VTY +LI G C A    
Sbjct: 415 ---LKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVE 471

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            A+ LL  +  +G+      +N ++  L K  +  EA RL   M  +G  P+  T+  + 
Sbjct: 472 VASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGNTPDAFTYKIVF 531

Query: 366 DGFCLTGR-VNHAKELFVSMESMG 388
            G   +G  +  A +  + M   G
Sbjct: 532 RGLSNSGGPIGEAVDFVIEMIEKG 555



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/245 (28%), Positives = 119/245 (48%), Gaps = 7/245 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L     K K  +    +F ++   GL  +  TYN LI+  CK  RV     ++ 
Sbjct: 349 VITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTLIDGLCKSRRVQEAAQLMD 408

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +++     PD   + S++   C E  I +AA +   + + GC+P+++TY TLI GLC+ G
Sbjct: 409 QMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAG 468

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              VA  L   +       G+V  P+   Y  +I  L K     +A  LF +M++K   P
Sbjct: 469 RVEVASRLLRSIQLK----GMVLTPHA--YNPVIQALFKRKRTKEAMRLFREMEEKGNTP 522

Query: 287 DVVTYNSLIHGFCYAND-WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           D  TY  +  G   +     EA   +IEM+++G  P+  +F ++ + LC     D   +L
Sbjct: 523 DAFTYKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLCSLSMEDTLIKL 582

Query: 346 LELMI 350
           ++L++
Sbjct: 583 VDLVM 587



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 79/272 (29%), Positives = 128/272 (47%), Gaps = 57/272 (20%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D + +  L+  L   +++     + + + + G KP+V T++ LI  LC+      A+ + 
Sbjct: 157 DTLLYNFLLNVLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVM 216

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIID---------------------------------- 261
           EEM++    +G+V  P+  T+TT++                                   
Sbjct: 217 EEMSS----YGLV--PDEKTFTTLMQGFIEEGNMDGAFRVKEQMLDAGCPVTNVTVNVLV 270

Query: 262 -GLCKEG-------FVDK---------AKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G CKEG       F+D+         A EL+ +MK+K   PD  TYN LI   CY    
Sbjct: 271 HGFCKEGRIEEALSFIDEMSNEGKHTMAIELYNEMKNKGCQPDEFTYNMLIDSLCYRGKL 330

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  LL EM   G   +V+T+N ++D  CKN K++EA  + + M ++G++ N+ T++TL
Sbjct: 331 QEALGLLREMEISGCARNVITYNTLIDGFCKNKKIEEAEEIFDQMEIQGLSRNSVTYNTL 390

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DG C + RV  A +L   M   G K   F+Y
Sbjct: 391 IDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTY 422



 Score = 81.6 bits (200), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 95/214 (44%), Gaps = 10/214 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  IFD M     S   +T +N L   L K++       L  ++   GL PD +TYN 
Sbjct: 366 EEAEEIFDQMEIQGLSRNSVT-YNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNS 424

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++  FC+ G +     ++  +  +   PD V + +LI GLC   R+  A+ L   ++  G
Sbjct: 425 MLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQLKG 484

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKE 266
                  Y+ +I  L +   T  A+ LF EM   GN        P+  TY  +  GL   
Sbjct: 485 MVLTPHAYNPVIQALFKRKRTKEAMRLFREMEEKGN-------TPDAFTYKIVFRGLSNS 537

Query: 267 GF-VDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           G  + +A +  ++M +K   P+  ++  L  G C
Sbjct: 538 GGPIGEAVDFVIEMIEKGFLPEFSSFYMLAEGLC 571



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 8/177 (4%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T + L++ L R      AL L    A+    F    +PN+  Y  I+  L K G  +  K
Sbjct: 53  TPAQLLDTLRRQNDETAALRLLS-WASKQPNF----RPNSSIYEEILRKLGKVGSFNSMK 107

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GVQPDVVTFNVIMD 331
           ++  +MK  +   D       I  +     + E  C+ +E+M+   G+  D + +N +++
Sbjct: 108 DILQEMKGLDCQIDRGVLLIFIDSYAKFELYEEILCI-VEVMEVEFGLALDTLLYNFLLN 166

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L    K+     +   M+ +G+ P+ STF+ L+   C   ++  A  +   M S G
Sbjct: 167 VLVDGNKLKLVENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYG 223


>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
           chloroplastic-like [Glycine max]
          Length = 793

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 154/310 (49%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            E  C+ + M+      P   ++N L   L+K  H D  L+  K     G   D   Y+ 
Sbjct: 357 EEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSA 416

Query: 148 LINCFCKMGRVSHG-FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++ FC+ GR+     +V+    R C  PD V +T+++ G C   RI EA  +  ++   
Sbjct: 417 IVHSFCQKGRMDEAKSLVIDMYSRGC-NPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKH 475

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GCKPN ++Y+ L+NGLC +G ++ A     EM N + +      PN +TY  ++ GL +E
Sbjct: 476 GCKPNTVSYTALLNGLCHSGKSLEA----REMINVSEEHWWT--PNAITYGAVMHGLRRE 529

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G + +A +L  +M +K   P  V  N LI   C      EA   L E +++G   +VV F
Sbjct: 530 GKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNF 589

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++   C+ G M+ A  +L+ M L G +P+  T++ L D     GR++ A EL V M S
Sbjct: 590 TTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYTALFDALGKKGRLDEAAELIVKMLS 649

Query: 387 MGCKHTVFSY 396
            G   T  +Y
Sbjct: 650 KGLDPTPVTY 659



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 91/289 (31%), Positives = 150/289 (51%), Gaps = 8/289 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  + G L K K  + V  L +++  ++ L PD  TYN LI+   K G      
Sbjct: 337 PPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDAL 396

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             L       F  D V +++++   C + R+ EA +L   + + GC P+V+TY+ +++G 
Sbjct: 397 AFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGF 456

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A  + ++M     K G  CKPNTV+YT +++GLC  G   +A+E+    ++ 
Sbjct: 457 CRLGRIDEAKKILQQMY----KHG--CKPNTVSYTALLNGLCHSGKSLEAREMINVSEEH 510

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+ +TY +++HG       +EA  L  EM+++G  P  V  N+++  LC+N K+ EA
Sbjct: 511 WWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEA 570

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            + LE  + +G   N   F+T++ GFC  G +  A  +   M   G KH
Sbjct: 571 KKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYLSG-KH 618



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 138/276 (50%), Gaps = 5/276 (1%)

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           P  +F  +    ++       L +   +   G+ P L   N  I    K G++      L
Sbjct: 234 PPEAFGYVMVSYSRAGKLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFL 293

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
            R+  +   PD V + SLIKG C  +RI +A  L   L + GC P+ ++Y T++  LC+ 
Sbjct: 294 ERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKE 353

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                   L E+M   +        P+ VTY T+I  L K G  D A     + +DK  +
Sbjct: 354 KKIEEVKCLMEKMVWNSNLI-----PDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFH 408

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            D V Y++++H FC     +EA  L+I+M  +G  PDVVT+  I+D  C+ G++DEA ++
Sbjct: 409 IDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKI 468

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           L+ M   G  PNT +++ L++G C +G+   A+E+ 
Sbjct: 469 LQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 504



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/301 (28%), Positives = 150/301 (49%), Gaps = 12/301 (3%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF--PDLYTYNILINCFCKMG 156
             R S  P+  + +L   L+KTK       + + +   G+   P+ + Y ++   + + G
Sbjct: 193 QWRYSHHPVVYYTML-DVLSKTKLCQGARRVLRLMTRRGIECPPEAFGYVMV--SYSRAG 249

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++ +   VL  + ++   P      + I  L    ++ +A     +++  G KP+++TY+
Sbjct: 250 KLRNALRVLTLMQKAGVEPSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYN 309

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +LI G C       AL L   + +        C P+ V+Y T++  LCKE  +++ K L 
Sbjct: 310 SLIKGYCDLNRIEDALELIAGLPSKG------CPPDKVSYYTVMGFLCKEKKIEEVKCLM 363

Query: 277 LQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
            +M  + N+ PD VTYN+LIH        ++A   L E  D+G   D V ++ I+   C+
Sbjct: 364 EKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQ 423

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            G+MDEA  L+  M  RG NP+  T++ ++DGFC  GR++ AK++   M   GCK    S
Sbjct: 424 KGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVS 483

Query: 396 Y 396
           Y
Sbjct: 484 Y 484



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 145/322 (45%), Gaps = 30/322 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L+  N     L K    +  L   +R+  TG+ PD+ TYN LI  +C + R+     +
Sbjct: 268 PSLSICNTTIYVLVKGGKLEKALKFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALEL 327

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLC 223
           +  +      PD V++ +++  LC E +I E   L  K+       P+ +TY+TLI+ L 
Sbjct: 328 IAGLPSKGCPPDKVSYYTVMGFLCKEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLS 387

Query: 224 RTGHTIVALNLFEEMANGN------GKFGVV-----------------------CKPNTV 254
           + GH   AL   +E  +        G   +V                       C P+ V
Sbjct: 388 KHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVV 447

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYT I+DG C+ G +D+AK++  QM      P+ V+Y +L++G C++    EA  ++   
Sbjct: 448 TYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVS 507

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            +    P+ +T+  +M  L + GK+ EA  L   M+ +G  P     + L+   C   +V
Sbjct: 508 EEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKV 567

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             AK+      + GC   V ++
Sbjct: 568 VEAKKYLEECLNKGCAINVVNF 589



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 79/359 (22%), Positives = 138/359 (38%), Gaps = 74/359 (20%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR--- 157
           R   P + ++  +     +    D    + +++   G  P+  +Y  L+N  C  G+   
Sbjct: 440 RGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNGLCHSGKSLE 499

Query: 158 ----------------------VSHGFVVLGRILRSC----------FTPDAVAFTSLIK 185
                                 V HG    G++  +C          F P  V    LI+
Sbjct: 500 AREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFPTPVEINLLIQ 559

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
            LC   +++EA     +    GC  NV+ ++T+I+G C+ G    AL++ ++M   +GK 
Sbjct: 560 SLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLDDMYL-SGKH 618

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY-------------- 291
                P+ VTYT + D L K+G +D+A EL ++M  K ++P  VTY              
Sbjct: 619 -----PDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVD 673

Query: 292 -------------------NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
                              N +I   C   +  EA  LL +++    + D  T +V+M+ 
Sbjct: 674 DMLNLLEKMLKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMES 733

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             K G    A ++   M  R + P+      +     L G++  A  L +     G + 
Sbjct: 734 YLKKGVAISAYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNLMLRFVERGIQQ 792


>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 624

 Score =  164 bits (416), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 150/300 (50%), Gaps = 6/300 (2%)

Query: 102 PSPP-PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           P PP   T F ++ G   + +  D  L++   + S    P    Y+++I   C+ G  S 
Sbjct: 111 PVPPNAYTYFPVVRGLCGRGRIADA-LAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSS 169

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              VL  +     T D      +I  +C +  + E   +  KL  FGC+ ++++Y+ ++ 
Sbjct: 170 ALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLK 229

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           GLC          L +EM   +     +    C P+   Y TIIDG+CKEG  + A E+ 
Sbjct: 230 GLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEIL 289

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M    + P+VV YN+++ G C A+ W +A  LL EM  +    D VTFN+++D  C+N
Sbjct: 290 SRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQN 349

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G +D    LLE M+  G  P+  T++T+++GFC  G ++ A  L  +M S GCK    SY
Sbjct: 350 GLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISY 409



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 149/300 (49%), Gaps = 16/300 (5%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSL----------FKRLNSTGLFPDLYTYNILINCFCKMG 156
           + S+N +   L   K +  V  L            ++   G  PD+  Y  +I+  CK G
Sbjct: 221 IVSYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEG 280

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
                  +L R+      P+ V + +++KG+C+  R  +A  L T++    C  + +T++
Sbjct: 281 HHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFN 340

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            L++  C+ G     + L E+M          C P+ +TYTT+I+G CKEG +D+A  L 
Sbjct: 341 ILVDFFCQNGLVDRVIELLEQMLEHG------CMPDVITYTTVINGFCKEGLIDEAVMLL 394

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M      P+ ++Y  ++ G C    W +A  L+  M+ QG  P+ VTFN I++ LCK 
Sbjct: 395 KNMPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKK 454

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G +++A  LL+ M++ G NP+  ++ST++DG    G+   A EL   M + G    V +Y
Sbjct: 455 GLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITY 514



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 164/323 (50%), Gaps = 24/323 (7%)

Query: 78  GQGDITAITPNEAFCIFDYMLNMRPSP-PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           G+G I      +A  + D M +    P PP+  ++++     ++  Y + L + + L++ 
Sbjct: 128 GRGRIA-----DALAVLDEMTSRSCVPIPPM--YHVIIESACRSGGYSSALRVLEALHAK 180

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G   D    N++IN  C  G V  G  +L ++       D V++ +++KGLCA  R  + 
Sbjct: 181 GSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDV 240

Query: 197 AAL----------FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
             L           +++   GC P++  Y+T+I+G+C+ GH  VA  +   M +    +G
Sbjct: 241 EELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRMPS----YG 296

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
           +  KPN V Y T++ G+C     +KA+EL  +M  KN   D VT+N L+  FC     + 
Sbjct: 297 L--KPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVTFNILVDFFCQNGLVDR 354

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
              LL +M++ G  PDV+T+  +++  CK G +DEA  LL+ M   G  PNT +++ ++ 
Sbjct: 355 VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNTISYTIVLK 414

Query: 367 GFCLTGRVNHAKELFVSMESMGC 389
           G C T R   A+EL   M   GC
Sbjct: 415 GLCSTERWVDAEELMSRMIQQGC 437



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 85/275 (30%), Positives = 147/275 (53%), Gaps = 8/275 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++   G  PD+ TY  +IN FCK G +    ++L  
Sbjct: 337 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKN 396

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC+  R ++A  L +++   GC PN +T++T+IN LC+ G 
Sbjct: 397 MPSCGCKPNTISYTIVLKGLCSTERWVDAEELMSRMIQQGCLPNPVTFNTIINFLCKKGL 456

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I P
Sbjct: 457 VEQAIELLKQMLVNG-------CNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 509

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +V+TY+S+          ++   +   + D  ++ D V +N ++  LCK  + D A   L
Sbjct: 510 NVITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFL 569

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             M+  G  PN ST++ L+ G    G +  A++L 
Sbjct: 570 AYMVSNGCMPNESTYTALIKGLASEGLLCEAQDLL 604



 Score =  151 bits (382), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 165/338 (48%), Gaps = 11/338 (3%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAK 119
           D  S    LK  C +   GD+  +  +E   + + +  M      P +  +  +   + K
Sbjct: 220 DIVSYNAVLKGLCAAKRWGDVEELM-DEMVKVHEALSQMAQHGCTPDIRMYATIIDGICK 278

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
             H++    +  R+ S GL P++  YN ++   C   R      +L  + +     D V 
Sbjct: 279 EGHHEVANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKAEELLTEMYQKNCPLDDVT 338

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           F  L+   C    +     L  ++   GC P+VITY+T+ING C+ G    A+ L + M 
Sbjct: 339 FNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMP 398

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           +        CKPNT++YT ++ GLC  E +VD A+EL  +M  +   P+ VT+N++I+  
Sbjct: 399 SCG------CKPNTISYTIVLKGLCSTERWVD-AEELMSRMIQQGCLPNPVTFNTIINFL 451

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C      +A  LL +M+  G  PD+++++ ++D L K GK +EA  LL +MI +G+ PN 
Sbjct: 452 CKKGLVEQAIELLKQMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNV 511

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T+S++       GR++   ++F +++    +     Y
Sbjct: 512 ITYSSMAFALAREGRIDKVIQMFDNIQDATIRSDAVLY 549



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 101/262 (38%), Gaps = 57/262 (21%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
            ++LI+ LC   R  +A      L A G    V+ Y+ ++ G CR G    A  L     
Sbjct: 55  LSALIRSLCVAGRTADA---VRALDAAGNAAGVVDYNAMVAGYCRVGQVEAARRL----- 106

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                  V   PN  TY  ++ GLC  G +  A  +  +M  ++  P    Y+ +I   C
Sbjct: 107 ----AAAVPVPPNAYTYFPVVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESAC 162

Query: 300 YANDWNEA-----------------NCLLI--------------EMMDQ----GVQPDVV 324
            +  ++ A                 NC L+              EM+ +    G + D+V
Sbjct: 163 RSGGYSSALRVLEALHAKGSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIV 222

Query: 325 TFNVIMDELCKNGKMDEASRLLELMI----------LRGVNPNTSTFSTLMDGFCLTGRV 374
           ++N ++  LC   +  +   L++ M+            G  P+   ++T++DG C  G  
Sbjct: 223 SYNAVLKGLCAAKRWGDVEELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHH 282

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
             A E+   M S G K  V  Y
Sbjct: 283 EVANEILSRMPSYGLKPNVVCY 304



 Score = 58.5 bits (140), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/151 (25%), Positives = 64/151 (42%), Gaps = 7/151 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S++ +   L K    +  L L   + + G+ P++ TY+ +     + GR+     +
Sbjct: 474 PDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREGRIDKVIQM 533

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I  +    DAV + ++I  LC       A      + + GC PN  TY+ LI GL  
Sbjct: 534 FDNIQDATIRSDAVLYNAVISSLCKRRETDLAIDFLAYMVSNGCMPNESTYTALIKGLAS 593

Query: 225 TGHTIVALNLFEEMANGNG-------KFGVV 248
            G    A +L  E+ +          +FG+V
Sbjct: 594 EGLLCEAQDLLSELCSRRAVRKHLTRRFGIV 624


>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           turbinata]
          Length = 413

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + + G+ PD+YTY++LIN  CK  ++     +
Sbjct: 157 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANEL 216

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 217 FDEMLVKGLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIYGLCK 276

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          KP+  TYTT+IDG CKEG +D A +   +M  +NI
Sbjct: 277 NGDLKQAHDLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENI 330

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD+ T+ +I++E CK G + + S+
Sbjct: 331 RLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 390

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 391 LLKEMQRNGHAPSVVTYNVLMNG 413



 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 153/280 (54%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K +++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 99  LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 158

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 159 VVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFD 218

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G++  PN VT+TT+IDG CK G VD A E++ +M  +++ PD++TYN+LI+
Sbjct: 219 EMLVK----GLI--PNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQSLLPDLITYNTLIY 272

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A +  + MI   +  
Sbjct: 273 GLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRL 332

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  G+   A+++   M S+G K  + +Y
Sbjct: 333 DDVAYTALISGLCQEGQSVDAEKMLREMLSVGLKPDIGTY 372



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 121 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 180

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L +   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 181 LKSAMLANGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 240

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++ M + +        P+ +TY T+I GLCK G + +A +L  +M  K 
Sbjct: 241 KNGRVDLAMEIYKRMLSQS------LLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKG 294

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 295 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAE 354

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 355 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTY 407



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 248 AMEIYKRMLSQSLLPDLITYNTLIYG-LCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLI 306

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E + ++A  +  ++ + G K
Sbjct: 307 DGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREMLSVGLK 366

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 367 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413


>gi|357438771|ref|XP_003589662.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478710|gb|AES59913.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 988

 Score =  164 bits (415), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S+N L    ++  ++   L LF  L S  L P + TYN LI+  C+ G +     +
Sbjct: 345 PDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGM 404

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +++    PD V FT L++G C    +  A  LF ++ + G KP+ I Y+T I G  +
Sbjct: 405 KDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKELFDEMLSRGLKPDCIAYTTRIVGELK 464

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G+   A  + EEM A G         P+ +TY  +I+GLCK G  D A EL  +M+ + 
Sbjct: 465 LGNPSKAFGMKEEMKAEG-------FPPDLITYNVLINGLCKLGNFDDANELVQKMRLEG 517

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I PD VTY S+IH    +    +A  +  +M+ +G+ P VVT+ V++      G++D A 
Sbjct: 518 IVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVVTYTVLIHSYAVRGRLDFAK 577

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  + M  +GV+PN  T++ L+ G C    ++ A  LF  MES G     ++Y
Sbjct: 578 KYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYNLFAEMESKGVSPNKYTY 630



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/362 (29%), Positives = 176/362 (48%), Gaps = 50/362 (13%)

Query: 70  LKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSL 129
           +  RCK    G         A  + D M  M    P   S+N+L   L+    +D    L
Sbjct: 214 MDSRCKEGEVG--------RAVEVLDVM-RMFGCDPNDVSYNVLVNGLSGKGEFDRAKEL 264

Query: 130 FKRLNSTGLFPDLYTYNILINCFCK----------------------------------- 154
            ++++  GL    +TYN LI  FCK                                   
Sbjct: 265 IEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALPTVVTYNTIMYSLCR 324

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           +GRVS     L  ++     PD V++ +LI G        EA  LF++L++    P+V+T
Sbjct: 325 LGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLFSELRSKNLVPSVVT 384

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TLI+G CRTG+  +A  + ++M     K G +C P+ VT+T ++ G C+ G +  AKE
Sbjct: 385 YNTLIDGGCRTGNLDIAKGMKDDMI----KHG-LC-PDVVTFTILVRGFCQMGNLPMAKE 438

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF +M  + + PD + Y + I G     + ++A  +  EM  +G  PD++T+NV+++ LC
Sbjct: 439 LFDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLC 498

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G  D+A+ L++ M L G+ P+  T+++++    ++G +  A+E+F  M   G   +V 
Sbjct: 499 KLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSVV 558

Query: 395 SY 396
           +Y
Sbjct: 559 TY 560



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 90/262 (34%), Positives = 139/262 (53%), Gaps = 6/262 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +T + D    +   +   GL PD+ T+ IL+  FC+MG +     +
Sbjct: 380 PSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQMGNLPMAKEL 439

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD +A+T+ I G        +A  +  ++KA G  P++ITY+ LINGLC+
Sbjct: 440 FDEMLSRGLKPDCIAYTTRIVGELKLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGLCK 499

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  L ++M       G+V  P+ VTYT+II      G + KA+E+F  M  K I
Sbjct: 500 LGNFDDANELVQKMRLE----GIV--PDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGI 553

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P VVTY  LIH +      + A     EM D+GV P+V+T+N ++  LCK   MD A  
Sbjct: 554 HPSVVTYTVLIHSYAVRGRLDFAKKYFDEMQDKGVSPNVITYNALIYGLCKENMMDVAYN 613

Query: 345 LLELMILRGVNPNTSTFSTLMD 366
           L   M  +GV+PN  T++ L++
Sbjct: 614 LFAEMESKGVSPNKYTYTILIN 635



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 94/325 (28%), Positives = 151/325 (46%), Gaps = 29/325 (8%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R S   +   +LL    AK    +  L +F ++ + GL PD+   N ++        V+ 
Sbjct: 131 RNSEVSVKLLDLLIQVFAKKLILEKCLMVFYKMVNNGLLPDVRNCNRVLKLLKDKSMVNE 190

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V   +++    P  V F +++   C E  +  A  +   ++ FGC PN ++Y+ L+N
Sbjct: 191 VEEVYSVMIKCQIRPTIVTFNTMMDSRCKEGEVGRAVEVLDVMRMFGCDPNDVSYNVLVN 250

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGV---------VCK--------------------P 251
           GL   G    A  L E+M+    K             CK                    P
Sbjct: 251 GLSGKGEFDRAKELIEQMSMLGLKVSAHTYNPLIRGFCKKEMFEEANDLRREMLGRGALP 310

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
             VTY TI+  LC+ G V  A+     M ++++ PD+V+YN+LI+G+    ++ EA  L 
Sbjct: 311 TVVTYNTIMYSLCRLGRVSDARRYLDVMVNEDLMPDLVSYNTLIYGYSRLGNFAEALLLF 370

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            E+  + + P VVT+N ++D  C+ G +D A  + + MI  G+ P+  TF+ L+ GFC  
Sbjct: 371 SELRSKNLVPSVVTYNTLIDGGCRTGNLDIAKGMKDDMIKHGLCPDVVTFTILVRGFCQM 430

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
           G +  AKELF  M S G K    +Y
Sbjct: 431 GNLPMAKELFDEMLSRGLKPDCIAY 455



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/253 (30%), Positives = 123/253 (48%), Gaps = 7/253 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML+    P  +     + G L K  +      + + + + G  PDL TYN+LIN  
Sbjct: 439 LFDEMLSRGLKPDCIAYTTRIVGEL-KLGNPSKAFGMKEEMKAEGFPPDLITYNVLINGL 497

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK+G       ++ ++      PD V +TS+I        + +A  +F+ +   G  P+V
Sbjct: 498 CKLGNFDDANELVQKMRLEGIVPDHVTYTSIIHAHLISGLLRKAEEVFSDMLKKGIHPSV 557

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY+ LI+     G    A   F+EM +          PN +TY  +I GLCKE  +D A
Sbjct: 558 VTYTVLIHSYAVRGRLDFAKKYFDEMQDKG------VSPNVITYNALIYGLCKENMMDVA 611

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             LF +M+ K ++P+  TY  LI+       W +A  L  +M+D+ ++PD  T + +M  
Sbjct: 612 YNLFAEMESKGVSPNKYTYTILINENSNLQYWQDALKLYKDMLDREIKPDSCTHSALMKH 671

Query: 333 LCKNGKMDEASRL 345
           L K+ K+    RL
Sbjct: 672 LSKDYKLLAVLRL 684


>gi|357470109|ref|XP_003605339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506394|gb|AES87536.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 472

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 92/297 (30%), Positives = 155/297 (52%), Gaps = 7/297 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M      P P+ +FN+L   L K         L   +   G  P+  TYN 
Sbjct: 52  DEAVSLLDEMQVEGTFPNPV-AFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNS 110

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C  G++     +L R++ +   P+ + F +L+ G     R ++   +   L+  G
Sbjct: 111 LVHGLCLKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKG 170

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N  +YS+LI+GL + G     + L++EM          CKPNT+ Y+ +IDGLC+EG
Sbjct: 171 YRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKG------CKPNTIVYSALIDGLCREG 224

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D+AKE  ++MK+K   P+  TY+SL+ G+  A D ++A  +  EM D       V ++
Sbjct: 225 KPDEAKEYLIEMKNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYS 284

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++++ LCKNGK+ EA  + + M+ RG+  +   +S+++ GFC    V    +LF  M
Sbjct: 285 ILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGMKLFNQM 341



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 137/280 (48%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L +  + D  + +F+ ++      D YTY+ L++  C  GR+     +L  +      P+
Sbjct: 10  LCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEMQVEGTFPN 69

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            VAF  LI  LC +  +  A+ L   +   GC PN +TY++L++GLC  G    A++L  
Sbjct: 70  PVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKGKLDKAMSLLN 129

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            M          C PN +T+ T++DG  K G       + + +++K    +  +Y+SLI 
Sbjct: 130 RMVANK------CVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYSSLIS 183

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G            L  EM+++G +P+ + ++ ++D LC+ GK DEA   L  M  +G  P
Sbjct: 184 GLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEMKNKGHTP 243

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N+ T+S+LM G+   G ++ A  ++  M    C H    Y
Sbjct: 244 NSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCY 283



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 83/288 (28%), Positives = 142/288 (49%), Gaps = 9/288 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +T  +L+ G   K K  D  +SL  R+ +    P+  T+  L++ F K GR   G  
Sbjct: 103 PNEVTYNSLVHGLCLKGK-LDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVR 161

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           VL  +    +  +  +++SLI GL  E +      L+ ++   GCKPN I YS LI+GLC
Sbjct: 162 VLVSLEEKGYRGNEFSYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLC 221

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G    A     EM N          PN+ TY++++ G  + G + KA  ++ +M D +
Sbjct: 222 REGKPDEAKEYLIEMKNKGH------TPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDND 275

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            N   V Y+ LI+G C      EA  +  +M+ +G++ DVV ++ ++   C    +++  
Sbjct: 276 CNHHEVCYSILINGLCKNGKLKEALIVWKQMLSRGIKLDVVAYSSMIHGFCNAQLVEQGM 335

Query: 344 RLLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +L   M+     + P+  T++ L++ FC    V+ A ++  +M   GC
Sbjct: 336 KLFNQMLCHNPKLQPDVVTYNILLNAFCTKNSVSRAIDILNTMLDQGC 383



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 29/284 (10%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S++ L   L K    +  + L+K +   G  P+   Y+ LI+  C+ G+       L  +
Sbjct: 177 SYSSLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGKPDEAKEYLIEM 236

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                TP++  ++SL+ G      I +A  ++ ++    C  + + YS LINGLC+ G  
Sbjct: 237 KNKGHTPNSFTYSSLMWGYFEAGDIHKAILVWKEMTDNDCNHHEVCYSILINGLCKNGKL 296

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNINP 286
             AL ++++M +   K  VV       Y+++I G C    V++  +LF QM   +  + P
Sbjct: 297 KEALIVWKQMLSRGIKLDVV------AYSSMIHGFCNAQLVEQGMKLFNQMLCHNPKLQP 350

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN------GK-- 338
           DVVTYN L++ FC  N  + A  +L  M+DQG  PD +T ++ +  L  N      G+  
Sbjct: 351 DVVTYNILLNAFCTKNSVSRAIDILNTMLDQGCDPDFITCDIFLKTLRDNMDPPQDGREF 410

Query: 339 MDE-------------ASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +DE             AS ++E+M+ + + P  ST++  +   C
Sbjct: 411 LDELVVRLIKRQRTVGASNIIEVMLQKFLLPKPSTWALAVQQLC 454



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 6/214 (2%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           ++  LC    + +A  +F  +    C  +  TYSTL++GLC  G    A++L +EM    
Sbjct: 6   IVLALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSLLDEM-QVE 64

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G F     PN V +  +I  LCK+G + +A +L   M  K   P+ VTYNSL+HG C   
Sbjct: 65  GTF-----PNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLCLKG 119

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             ++A  LL  M+     P+ +TF  ++D   K+G+  +  R+L  +  +G   N  ++S
Sbjct: 120 KLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRALDGVRVLVSLEEKGYRGNEFSYS 179

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+ G    G+  H  +L+  M   GCK     Y
Sbjct: 180 SLISGLFKEGKGEHGMQLWKEMVEKGCKPNTIVY 213


>gi|356499327|ref|XP_003518493.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Glycine max]
          Length = 725

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 91/292 (31%), Positives = 155/292 (53%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN++   L K  +  + L L   + +    P++ TY ILIN FCK GR+     +
Sbjct: 375 PDAYTFNIMIDGLVKKGYLVSALELLNEMVAKRFEPNVITYTILINGFCKQGRLEEAAEI 434

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +     + + V +  LI  LC +  I EA  LF ++   GCKP++ T+++LINGLC+
Sbjct: 435 VNSMSAKGLSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCK 494

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL+L+ +M       GV+   NTVTY T++        + +A +L  +M  +  
Sbjct: 495 NHKMEEALSLYHDMF----LEGVIA--NTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGC 548

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D +TYN LI   C      +   L  EM+ +G+ P +++ N+++  LC+ GK+++A +
Sbjct: 549 PLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNILISGLCRTGKVNDALK 608

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+ MI RG+ P+  T+++L++G C  G V  A  LF  ++S G +    +Y
Sbjct: 609 FLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITY 660



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 96/319 (30%), Positives = 154/319 (48%), Gaps = 16/319 (5%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            GD   + PN    +F  ML+ R   P + +F ++   L      D+  SL + +   G 
Sbjct: 182 DGDCPRVAPN----VFYDMLS-RGVSPTVYTFGVVMKALCMVSEVDSACSLLRDMAKHGC 236

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+   Y  LI+  C+  RVS    +L  +   C  PD   F  +I GLC   RI EAA 
Sbjct: 237 VPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRIHEAAK 296

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L  ++   G   + +TY  L++GLCR G    A  L  ++ N          PNTV Y T
Sbjct: 297 LLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARALLNKIPN----------PNTVLYNT 346

Query: 259 IIDGLCKEGFVDKAKELFL-QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           +I G    G  ++AK+L    M      PD  T+N +I G         A  LL EM+ +
Sbjct: 347 LISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLNEMVAK 406

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
             +P+V+T+ ++++  CK G+++EA+ ++  M  +G++ NT  ++ L+   C  G +  A
Sbjct: 407 RFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGYNCLICALCKDGNIEEA 466

Query: 378 KELFVSMESMGCKHTVFSY 396
            +LF  M   GCK  ++++
Sbjct: 467 LQLFGEMSGKGCKPDIYTF 485



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 11/293 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN +   L +         L  R+   G   D  TY  L++  C+MG+V     +
Sbjct: 273 PDVQTFNDVIHGLCRAGRIHEAAKLLDRMLLRGFSTDALTYGYLMHGLCRMGQVDEARAL 332

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA-ALFTKLKAFGCKPNVITYSTLINGLC 223
           L +I      P+ V + +LI G  A  R  EA   L+  +   G +P+  T++ +I+GL 
Sbjct: 333 LNKIP----NPNTVLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLV 388

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+ + AL L  EM     +F    +PN +TYT +I+G CK+G +++A E+   M  K 
Sbjct: 389 KKGYLVSALELLNEMVAK--RF----EPNVITYTILINGFCKQGRLEEAAEIVNSMSAKG 442

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++ + V YN LI   C   +  EA  L  EM  +G +PD+ TFN +++ LCKN KM+EA 
Sbjct: 443 LSLNTVGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEAL 502

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L   M L GV  NT T++TL+  F +   +  A +L   M   GC     +Y
Sbjct: 503 SLYHDMFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITY 555



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 101/349 (28%), Positives = 166/349 (47%), Gaps = 17/349 (4%)

Query: 51  KLKESLRLTVKDRASL--EQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLT 108
           K+ E L   +KD   L  E       K  G+  +    P +A  +   M  +    P   
Sbjct: 116 KVIEKLLKQMKDEGLLFKESLFILIMKHYGKAGL----PGQATRLLLDMWGVYSCDPTFK 171

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N++   L          ++F  + S G+ P +YT+ +++   C +  V     +L  +
Sbjct: 172 SYNVVLDILVDGDCPRVAPNVFYDMLSRGVSPTVYTFGVVMKALCMVSEVDSACSLLRDM 231

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +    P++V + +LI  LC  +R+ EA  L   +    C+P+V T++ +I+GLCR G  
Sbjct: 232 AKHGCVPNSVIYQTLIHALCENNRVSEALQLLEDMFLMCCEPDVQTFNDVIHGLCRAGRI 291

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  L + M             + +TY  ++ GLC+ G VD+A+ L     +K  NP+ 
Sbjct: 292 HEAAKLLDRMLLRG------FSTDALTYGYLMHGLCRMGQVDEARALL----NKIPNPNT 341

Query: 289 VTYNSLIHGFCYANDWNEANCLLI-EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V YN+LI G+  +  + EA  LL   M+  G +PD  TFN+++D L K G +  A  LL 
Sbjct: 342 VLYNTLISGYVASGRFEEAKDLLYNNMVIAGYEPDAYTFNIMIDGLVKKGYLVSALELLN 401

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M+ +   PN  T++ L++GFC  GR+  A E+  SM + G       Y
Sbjct: 402 EMVAKRFEPNVITYTILINGFCKQGRLEEAAEIVNSMSAKGLSLNTVGY 450



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 129/259 (49%), Gaps = 6/259 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             +N L   L K  + +  L LF  ++  G  PD+YT+N LIN  CK  ++     +   
Sbjct: 448 VGYNCLICALCKDGNIEEALQLFGEMSGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHD 507

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +       + V + +L+        I +A  L  ++   GC  + ITY+ LI  LC+TG 
Sbjct: 508 MFLEGVIANTVTYNTLVHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGA 567

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
               L LFEEM  G G F     P  ++   +I GLC+ G V+ A +    M  + + PD
Sbjct: 568 VEKGLGLFEEML-GKGIF-----PTIISCNILISGLCRTGKVNDALKFLQDMIHRGLTPD 621

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +VTYNSLI+G C      EA+ L  ++  +G++PD +T+N ++   C  G  ++A  LL 
Sbjct: 622 IVTYNSLINGLCKMGHVQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLY 681

Query: 348 LMILRGVNPNTSTFSTLMD 366
             +  G  PN  T+S L++
Sbjct: 682 KGVDSGFIPNEVTWSILIN 700



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/247 (30%), Positives = 129/247 (52%), Gaps = 7/247 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M + +   P + +FN L   L K    +  LSL+  +   G+  +  TYN L
Sbjct: 465 EALQLFGEM-SGKGCKPDIYTFNSLINGLCKNHKMEEALSLYHDMFLEGVIANTVTYNTL 523

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ F     +   F ++  +L      D + +  LIK LC    + +   LF ++   G 
Sbjct: 524 VHAFLMRDSIQQAFKLVDEMLFRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGI 583

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P +I+ + LI+GLCRTG    AL   ++M +          P+ VTY ++I+GLCK G 
Sbjct: 584 FPTIISCNILISGLCRTGKVNDALKFLQDMIHRG------LTPDIVTYNSLINGLCKMGH 637

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A  LF +++ + I PD +TYN+LI   C+   +N+A  LL + +D G  P+ VT+++
Sbjct: 638 VQEASNLFNKLQSEGIRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSGFIPNEVTWSI 697

Query: 329 IMDELCK 335
           +++ + K
Sbjct: 698 LINYIVK 704



 Score = 97.1 bits (240), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 61/180 (33%), Positives = 96/180 (53%), Gaps = 9/180 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF + D ML  R  P    ++N L   L KT   +  L LF+ +   G+FP + + NI
Sbjct: 534 QQAFKLVDEML-FRGCPLDNITYNGLIKALCKTGAVEKGLGLFEEMLGKGIFPTIISCNI 592

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G+V+     L  ++    TPD V + SLI GLC    + EA+ LF KL++ G
Sbjct: 593 LISGLCRTGKVNDALKFLQDMIHRGLTPDIVTYNSLINGLCKMGHVQEASNLFNKLQSEG 652

Query: 208 CKPNVITYSTLINGLCRTG-HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            +P+ ITY+TLI+  C  G      L L++ + +G         PN VT++ +I+ + K+
Sbjct: 653 IRPDAITYNTLISRHCHEGMFNDACLLLYKGVDSG-------FIPNEVTWSILINYIVKK 705


>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 101/354 (28%), Positives = 157/354 (44%), Gaps = 76/354 (21%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN     L +    +T L LF  + S G  PD+ +Y I+I+  C   R      V
Sbjct: 117 PDIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKV 176

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++    +PD  A  +L+ GLC+  R+  A  L   +   G K N + Y+ LI+G CR
Sbjct: 177 WRRLIDKGLSPDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCR 236

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ +   M+         C P+ VTY  +++  C+EG VD+A  L   M+   +
Sbjct: 237 MGRVDKAMKIKAFMSRTG------CVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGV 290

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMD---------------------------- 316
            PD+ +YN L+ GFC AN  + A+ +++E M                             
Sbjct: 291 EPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRKGYE 350

Query: 317 -------QGVQPDVVTFNV-----------------------------------IMDELC 334
                  +G++PD+VTFN+                                   ++D LC
Sbjct: 351 LFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLC 410

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           KNGK+D A  +   M+  GVNP+  +++ L++GFC T RV  A  LF  M+S G
Sbjct: 411 KNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKG 464



 Score =  150 bits (380), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 141/264 (53%), Gaps = 6/264 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N+L     +    D  + L + +  +G+ PDLY+YN L+  FCK   V    ++
Sbjct: 257 PDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHLM 316

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +   +++    D V++ ++I   C   R  +   LF ++   G +P+++T++ LI+   R
Sbjct: 317 MVERMQTKGMCDVVSYNTVITAFCKARRTRKGYELFEEMCGKGIRPDMVTFNILIDAFLR 376

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G T V   L +EM     K  V+  P+ + YT ++D LCK G VD A  +F  M +  +
Sbjct: 377 EGSTHVVKKLLDEMT----KMRVL--PDCIFYTAVVDHLCKNGKVDVAHSVFRDMVENGV 430

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           NPDV++YN+L++GFC  +   +A  L  EM  +G+ PD VT+ +I+  L +  K+  A R
Sbjct: 431 NPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACR 490

Query: 345 LLELMILRGVNPNTSTFSTLMDGF 368
           + + M+ RG   N     TL++  
Sbjct: 491 VWDQMMERGFTLNRHLSETLVNAI 514



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 136/279 (48%), Gaps = 6/279 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L     +    D  + +   ++ TG  PDL TYNIL+N  C+ G V     ++  + 
Sbjct: 227 YNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETME 286

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           RS   PD  ++  L+KG C  + +  A  +  +        +V++Y+T+I   C+   T 
Sbjct: 287 RSGVEPDLYSYNELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTR 346

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               LFEEM  G G      +P+ VT+  +ID   +EG     K+L  +M    + PD +
Sbjct: 347 KGYELFEEMC-GKG-----IRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCI 400

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            Y +++   C     + A+ +  +M++ GV PDV+++N +++  CK  ++ +A  L + M
Sbjct: 401 FYTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEM 460

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +G+ P+  T+  ++ G     +++ A  ++  M   G
Sbjct: 461 QSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERG 499



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/256 (27%), Positives = 119/256 (46%), Gaps = 8/256 (3%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
            Y   I+   K G ++    +  ++  S     +V +   I  L   SR+  A   + + 
Sbjct: 12  AYRSQISKLVKAGLINQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHYYRRH 71

Query: 204 ---KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
              + F   P   TYS  I+ LC   + I  L L   +       G V  P+   + T +
Sbjct: 72  VIPRGFSLLP--FTYSRFISALCSAPNNI-NLPLIHSLLLDMDSLGFV--PDIWAFNTYL 126

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           + LC++  ++ A ELF  M  K  +PDVV+Y  +I   C A  ++EA  +   ++D+G+ 
Sbjct: 127 NLLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLS 186

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD      ++  LC  G++D A  L+  +I  GV  N+  ++ L+DGFC  GRV+ A ++
Sbjct: 187 PDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKI 246

Query: 381 FVSMESMGCKHTVFSY 396
              M   GC   + +Y
Sbjct: 247 KAFMSRTGCVPDLVTY 262



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 1/130 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + D M  MR  P  +  +  +   L K    D   S+F+ +   G+ PD+ +YN L+N F
Sbjct: 386 LLDEMTKMRVLPDCIF-YTAVVDHLCKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGF 444

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK  RV     +   +      PD V +  ++ GL    +I  A  ++ ++   G   N 
Sbjct: 445 CKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLACRVWDQMMERGFTLNR 504

Query: 213 ITYSTLINGL 222
               TL+N +
Sbjct: 505 HLSETLVNAI 514


>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g74580-like [Brachypodium distachyon]
          Length = 841

 Score =  164 bits (415), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 149/300 (49%), Gaps = 40/300 (13%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +  FN L    +K    +  L ++  +N  GL P   T+N LI   C  GR+    +
Sbjct: 418 PVSVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGLCNQGRLDDAQL 477

Query: 164 VL------GRILRSCFT----------------------------PDAVAFTSLIKGLCA 189
           +L      G  + + FT                            PD +AF++ I GLC 
Sbjct: 478 LLEHMICKGYCVGTSFTIYMDSYFRSGNVEGALKCWDDMVKVGVQPDFIAFSAYISGLCR 537

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
              + EA   F ++   G  PN ITY++LI+  CR G+   AL L ++M       G++ 
Sbjct: 538 LDHVNEAYQAFVEMTGRGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQS----GLI- 592

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+  T   +IDG CKEG +D   + FL M +  + PDVVTYN++I+ +C A D + A  
Sbjct: 593 -PDVFTSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMI 651

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            + +M+  G +PD+ T+N+ M  LC N  ++ A ++L+ ++  G  PN+ T++TLMDG C
Sbjct: 652 FMNKMLADGCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVAMGCMPNSVTYNTLMDGIC 711



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 91/322 (28%), Positives = 148/322 (45%), Gaps = 45/322 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L++   L   L +         +F  + + G  P L  +N +I  FC  G V  G  +
Sbjct: 173 PSLSAIAALLRLLFRAGEVRPAWKVFVEMTARGPRPSLAIFNAMILGFCHRGLVHIGLGL 232

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG + R    PDA ++  LIKG     +  +A  L  +++  GC+P V+TY+ L+N LC 
Sbjct: 233 LGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRESGCQPTVVTYNILVNVLCH 292

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+ + A  LF+EM     K G+  + NT+T+  ++DG  K G +D+A     +MK + +
Sbjct: 293 DGNMVDARRLFDEMV----KVGI--EANTITFNVLVDGYAKAGRMDEAYAACREMKARGL 346

Query: 285 NPDVVTYN-------------SLIHG-----------------------FCYANDWNEAN 308
            PD  T+N              L HG                        C+    ++A 
Sbjct: 347 VPDCCTFNILSAGAYKFGKAVQLAHGQQELHEMFGSRISADSVDMVVCRLCWDGRLDDAW 406

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            L+   ++QGV   V  FN ++    K G  ++A  +  +M   G+ P++ TF+ L+ G 
Sbjct: 407 KLVCSAIEQGVPVSVAGFNALVAAYSKEGFDEQALEVYSVMNKIGLVPSSPTFNYLIMGL 466

Query: 369 CLTGRVNHAKELFVSMESMGCK 390
           C  GR++ A+ L   +E M CK
Sbjct: 467 CNQGRLDDAQLL---LEHMICK 485



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/242 (28%), Positives = 113/242 (46%), Gaps = 8/242 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+  F  M   R   P   ++N L     +  +    L L K++  +GL PD++T NI
Sbjct: 542 NEAYQAFVEMTG-RGFVPNNITYNSLISAFCRVGYVSEALKLEKKMRQSGLIPDVFTSNI 600

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ FCK GR+         +  S  TPD V + ++I   C    +  A     K+ A G
Sbjct: 601 LIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMIFMNKMLADG 660

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+P++ TY+  ++ LC       A+ + +E+        + C PN+VTY T++DG+C + 
Sbjct: 661 CEPDIFTYNIWMHSLCNNHLLNRAVKMLDELV------AMGCMPNSVTYNTLMDGICSD- 713

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A  L  ++      P+ VT N     FC       A     ++ +  V  D  T N
Sbjct: 714 VLDRAMILTGKLIKMAFQPNTVTVNVFFSHFCKQGFGKRALVWAEKLKEDSVAFDDATMN 773

Query: 328 VI 329
           ++
Sbjct: 774 IL 775



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 8/195 (4%)

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNT 253
           EA  +   ++  G  P++   + L+  L R G    A  +F EM A G        +P+ 
Sbjct: 158 EALVVLAHIRCGGNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTARGP-------RPSL 210

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
             +  +I G C  G V     L   M   N+ PD  +YN LI G+       +A  LL E
Sbjct: 211 AIFNAMILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDE 270

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M + G QP VVT+N++++ LC +G M +A RL + M+  G+  NT TF+ L+DG+   GR
Sbjct: 271 MRESGCQPTVVTYNILVNVLCHDGNMVDARRLFDEMVKVGIEANTITFNVLVDGYAKAGR 330

Query: 374 VNHAKELFVSMESMG 388
           ++ A      M++ G
Sbjct: 331 MDEAYAACREMKARG 345



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/130 (23%), Positives = 58/130 (44%)

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A  +   ++     P +    +L+     A +   A  + +EM  +G +P +  F
Sbjct: 154 GMASEALVVLAHIRCGGNTPSLSAIAALLRLLFRAGEVRPAWKVFVEMTARGPRPSLAIF 213

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++   C  G +     LL +M    V P+  +++ L+ G+ + G+   A +L   M  
Sbjct: 214 NAMILGFCHRGLVHIGLGLLGVMWRFNVIPDACSYNILIKGYSVFGQAGDAFQLLDEMRE 273

Query: 387 MGCKHTVFSY 396
            GC+ TV +Y
Sbjct: 274 SGCQPTVVTY 283


>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 527

 Score =  164 bits (415), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 155/302 (51%), Gaps = 9/302 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A  P+ AF +F+ + + R     + S N L   L K +  + +  +F  +++ G  PD  
Sbjct: 164 AHLPDRAFQVFERIPSFR-CKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDAC 221

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T+NILI+  C  G +   + V   + +    P+ V F +LI GL   S++ EA  L   +
Sbjct: 222 TFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDM 281

Query: 204 -KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
            K +  KPN   Y+TLI G C  G    A  L EEM   N K        +  Y+T+I  
Sbjct: 282 VKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLV------SAVYSTLISA 335

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L K G  ++  ++  +M +    PD VTYN++I+G C  ND   A+ ++ EM+++G +PD
Sbjct: 336 LFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPD 395

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN I+  LCK GK+D+A  LLE M  RG  P+  ++  + DG C   ++  A  +  
Sbjct: 396 VFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILD 455

Query: 383 SM 384
            M
Sbjct: 456 EM 457



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 11/261 (4%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A+     + +FD M      P  +T   L++G    +K  + +      +    + 
Sbjct: 234 GDLDAV-----WGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIK 288

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+   Y  LI  FC +G ++  F +   ++ S     +  +++LI  L    R  E + +
Sbjct: 289 PNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDI 348

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   GCKP+ +TY+ +ING C+      A  + +EM          CKP+  ++ TI
Sbjct: 349 LREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKG------CKPDVFSFNTI 402

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I  LCKEG +DKA +L   M  +   PDV++Y  +  G C      EA  +L EM+ +G 
Sbjct: 403 IGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGY 462

Query: 320 QPDVVTFNVIMDELCKNGKMD 340
            P   + N ++D LC+   M+
Sbjct: 463 VPRNESINKLVDRLCQECNME 483



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 62/138 (44%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +     K    ++   +   +   G  PD++++N +I   CK G++     +
Sbjct: 359 PDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDL 418

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + R    PD +++  +  GLC   ++ EA ++  ++   G  P   + + L++ LC+
Sbjct: 419 LEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQ 478

Query: 225 TGHTIVALNLFEEMANGN 242
             +  +   +   +  GN
Sbjct: 479 ECNMELLWMILNSLGRGN 496


>gi|219363731|ref|NP_001136745.1| hypothetical protein [Zea mays]
 gi|194696880|gb|ACF82524.1| unknown [Zea mays]
 gi|414875980|tpg|DAA53111.1| TPA: hypothetical protein ZEAMMB73_920038 [Zea mays]
          Length = 421

 Score =  164 bits (414), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 97/297 (32%), Positives = 164/297 (55%), Gaps = 11/297 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS---HG 161
           P L +FN++     KT        + K +++ G+ P + TYN LI+ +CK G+V    H 
Sbjct: 66  PDLFTFNIVISGFCKTGQLRKAGDVAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHV 125

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKG--LCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
             +L  ++++  +PD V F  LI G  LC E ++ ++  L  +++  G    + T ++++
Sbjct: 126 DALLKEMIQAGISPDVVTFNVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVL 185

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           NG C+ G  + A    E   +G  + G+  KPN +TY T++DG  + G + +A      M
Sbjct: 186 NGFCKKGMMVEA----EGWVDGIAQRGM--KPNVITYNTLVDGYRRLGKMKEAAAAKDAM 239

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             K I+P+V TYN LI GF  + DW   + LL EM ++GV+ DVVT+NV++  LC  G++
Sbjct: 240 AGKGISPNVKTYNCLITGFTTSRDWRSVSGLLDEMKEKGVKADVVTYNVLIGALCCKGEV 299

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +A +LL+ M+  G+ P    ++T+++GFC  G    A E+ + ME    +  V +Y
Sbjct: 300 RKAVKLLDEMVEVGLEPKHVAYNTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTY 356



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/207 (28%), Positives = 106/207 (51%), Gaps = 6/207 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ P++ TYN L++ + ++G++         +     +P+   +  LI G          
Sbjct: 208 GMKPNVITYNTLVDGYRRLGKMKEAAAAKDAMAGKGISPNVKTYNCLITGFTTSRDWRSV 267

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
           + L  ++K  G K +V+TY+ LI  LC  G    A+ L +EM        V  +P  V Y
Sbjct: 268 SGLLDEMKEKGVKADVVTYNVLIGALCCKGEVRKAVKLLDEMVE------VGLEPKHVAY 321

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            TII+G C++G    A E+ L+M+ +    +VVTYN  +  FC     +EAN +L EM++
Sbjct: 322 NTIINGFCEKGDAQGAHEIRLRMEKRKKRANVVTYNVFLKYFCKMGKMDEANVVLNEMLE 381

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +G+ P+ +T+ +I   + + G + + S
Sbjct: 382 KGLVPNRITYEIINSGMIEKGYVPDIS 408



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/201 (31%), Positives = 103/201 (51%), Gaps = 11/201 (5%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + P A +  +L+  L    R+  A   F         P++ T++ +I+G C+TG     L
Sbjct: 29  YRPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQ----L 84

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK---AKELFLQMKDKNINPDVV 289
               ++A     +GV   P+  TY T+IDG CK G V K      L  +M    I+PDVV
Sbjct: 85  RKAGDVAKNISAWGVA--PSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVV 142

Query: 290 TYNSLIHGF--CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           T+N LI+G+  C      ++  L+ EM + G+   + T N +++  CK G M EA   ++
Sbjct: 143 TFNVLINGYWLCREGKVEDSIKLVEEMEELGLACILSTMNSVLNGFCKKGMMVEAEGWVD 202

Query: 348 LMILRGVNPNTSTFSTLMDGF 368
            +  RG+ PN  T++TL+DG+
Sbjct: 203 GIAQRGMKPNVITYNTLVDGY 223



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 5/144 (3%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+  +   ++  L +   VD A   F     + ++PD+ T+N +I GFC      +A  
Sbjct: 30  RPSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGD 89

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKN---GKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +   +   GV P V T+N ++D  CK    GKM     LL+ MI  G++P+  TF+ L++
Sbjct: 90  VAKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTFNVLIN 149

Query: 367 GF--CLTGRVNHAKELFVSMESMG 388
           G+  C  G+V  + +L   ME +G
Sbjct: 150 GYWLCREGKVEDSIKLVEEMEELG 173



 Score = 55.5 bits (132), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 58/114 (50%), Gaps = 3/114 (2%)

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P   + N+L+     A+  + A+      + + V PD+ TFN+++   CK G++ +A  +
Sbjct: 31  PSAFSVNALLAALVRADRVDLADRAFRAALRRRVSPDLFTFNIVISGFCKTGQLRKAGDV 90

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVN---HAKELFVSMESMGCKHTVFSY 396
            + +   GV P+ +T++TL+DG+C  G+V    H   L   M   G    V ++
Sbjct: 91  AKNISAWGVAPSVATYNTLIDGYCKRGQVGKMYHVDALLKEMIQAGISPDVVTF 144


>gi|255583247|ref|XP_002532388.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527912|gb|EEF30000.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 676

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/273 (33%), Positives = 144/273 (52%), Gaps = 6/273 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           ++  S+F  +   G   +  +Y  LI+  C++GRV  G  +  ++      P    +T +
Sbjct: 21  NSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGINIFKKMREDDCYPTVRTYTVI 80

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           +  L    R MEA  LF++++  GC+PN+ TY+ +IN +C+         + +EM     
Sbjct: 81  VHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMV---- 136

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           + G+V  P+  TY  +IDG CKEG V+ A+E+   M   + NP+  TYN LI GFC   +
Sbjct: 137 EKGLV--PSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKN 194

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            + A  LL +M++  + P VVT+N ++   CK G +D A RLL LM   GV P+  T+S 
Sbjct: 195 VHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +D  C  GR+  A  LF S++  G K     Y
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIY 287



 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ ++   L ++      ++LF  +   G  P+++TY ++IN  CK  ++  G  +
Sbjct: 72  PTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRI 131

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P    + +LI G C E  +  A  +   + +  C PN  TY+ LI G CR
Sbjct: 132 LDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCR 191

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A+ L  +M            P+ VTY ++I G CK G++D A  L   M +  +
Sbjct: 192 KKNVHRAMALLSKMLESR------LTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGV 245

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY+  I   C      EAN L   + ++G++ + V +  ++D  CK GKMD+A+ 
Sbjct: 246 VPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANS 305

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M+     PN+ST++ L+DG C   +V  A  L  SM   G K TV +Y
Sbjct: 306 LLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTY 357



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 97/308 (31%), Positives = 157/308 (50%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   R   P + ++ ++   + K    +    +   +   GL P + TYN L
Sbjct: 92  EAINLFSEMRE-RGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNAL 150

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ +CK G V     +L  +  +   P+   +  LI G C +  +  A AL +K+     
Sbjct: 151 IDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGFCRKKNVHRAMALLSKMLESRL 210

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TY++LI+G C+ G+   A  L   M N NG   VV  P+  TY+  ID LCK+G 
Sbjct: 211 TPSVVTYNSLIHGQCKIGYLDSAYRLLNLM-NENG---VV--PDQWTYSVFIDTLCKKGR 264

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A  LF  +K+K I  + V Y +LI G+C A   ++AN LL  M+ +   P+  T+N 
Sbjct: 265 IEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTEDCLPNSSTYNA 324

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LCK  K+ EA  L+E MI +G+     T++ L+      G  ++A  +   M S G
Sbjct: 325 LIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSG 384

Query: 389 CKHTVFSY 396
            +  V+ Y
Sbjct: 385 YQPDVYIY 392



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 88/302 (29%), Positives = 153/302 (50%), Gaps = 7/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N AF +F+ M         ++  NL+ G L +    D  +++FK++     +P + TY +
Sbjct: 21  NSAFSVFNMMPKKGCRRNEVSYTNLIHG-LCEVGRVDEGINIFKKMREDDCYPTVRTYTV 79

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++   + GR      +   +      P+   +T +I  +C E+++ E   +  ++   G
Sbjct: 80  IVHALFESGRRMEAINLFSEMRERGCEPNIHTYTVMINAMCKETKLEEGRRILDEMVEKG 139

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TY+ LI+G C+ G    A  + + M + +      C PN  TY  +I G C++ 
Sbjct: 140 LVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNS------CNPNERTYNELICGFCRKK 193

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A  L  +M +  + P VVTYNSLIHG C     + A  LL  M + GV PD  T++
Sbjct: 194 NVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQWTYS 253

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           V +D LCK G+++EA+ L   +  +G+  N   ++ L+DG+C  G+++ A  L   M + 
Sbjct: 254 VFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTE 313

Query: 388 GC 389
            C
Sbjct: 314 DC 315



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     + K+    ++L  ++  + L P + TYN LI+  CK+G +   + +
Sbjct: 177 PNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRL 236

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   PD   ++  I  LC + RI EA  LF  LK  G K N + Y+ LI+G C+
Sbjct: 237 LNLMNENGVVPDQWTYSVFIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCK 296

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L + M   +      C PN+ TY  +IDGLCKE  V +A  L   M  K +
Sbjct: 297 AGKMDDANSLLDRMLTED------CLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGL 350

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              V TY  LI       D++ A+ +L +M+  G QPDV  +   +   C  G + EA  
Sbjct: 351 KCTVPTYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAED 410

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ +M  RGV P+  T++ ++D +   G +N A ++   M   GC  +  +Y
Sbjct: 411 MMSMMFERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTY 462



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 138/278 (49%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +   ML  R +P  +T  +L+ G   K  + D+   L   +N  G+ PD +TY++
Sbjct: 196 HRAMALLSKMLESRLTPSVVTYNSLIHG-QCKIGYLDSAYRLLNLMNENGVVPDQWTYSV 254

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+  CK GR+    V+   +       + V +T+LI G C   ++ +A +L  ++    
Sbjct: 255 FIDTLCKKGRIEEANVLFNSLKEKGIKANEVIYTALIDGYCKAGKMDDANSLLDRMLTED 314

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN  TY+ LI+GLC+      AL L E M     + G+ C     TYT +I  + KEG
Sbjct: 315 CLPNSSTYNALIDGLCKERKVQEALLLMESMI----QKGLKC--TVPTYTILIVAMLKEG 368

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A  +  QM      PDV  Y + IH FC   +  EA  ++  M ++GV PD +T+ 
Sbjct: 369 DFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPDALTYT 428

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +++D     G ++ A  +L+ M   G +P+  T+S L+
Sbjct: 429 LVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLI 466



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 89/304 (29%), Positives = 141/304 (46%), Gaps = 7/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+  +   P + ++N L     K    +    +   ++S    P+  TYN LI  F
Sbjct: 131 ILDEMVE-KGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNSCNPNERTYNELICGF 189

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+   V     +L ++L S  TP  V + SLI G C    +  A  L   +   G  P+ 
Sbjct: 190 CRKKNVHRAMALLSKMLESRLTPSVVTYNSLIHGQCKIGYLDSAYRLLNLMNENGVVPDQ 249

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TYS  I+ LC+ G    A  LF  +     + G+  K N V YT +IDG CK G +D A
Sbjct: 250 WTYSVFIDTLCKKGRIEEANVLFNSLK----EKGI--KANEVIYTALIDGYCKAGKMDDA 303

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L  +M  ++  P+  TYN+LI G C      EA  L+  M+ +G++  V T+ +++  
Sbjct: 304 NSLLDRMLTEDCLPNSSTYNALIDGLCKERKVQEALLLMESMIQKGLKCTVPTYTILIVA 363

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           + K G  D A R+L+ M+  G  P+   ++  +  FC  G +  A+++   M   G    
Sbjct: 364 MLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMMFERGVMPD 423

Query: 393 VFSY 396
             +Y
Sbjct: 424 ALTY 427



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 66/223 (29%), Positives = 112/223 (50%), Gaps = 15/223 (6%)

Query: 183 LIKGLCAESRIMEAA---------ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
           ++ G C    ++EA          ++F  +   GC+ N ++Y+ LI+GLC  G     +N
Sbjct: 1   MVNGYCKLGNLVEANLNNDVNSAFSVFNMMPKKGCRRNEVSYTNLIHGLCEVGRVDEGIN 60

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           +F++M   +      C P   TYT I+  L + G   +A  LF +M+++   P++ TY  
Sbjct: 61  IFKKMREDD------CYPTVRTYTVIVHALFESGRRMEAINLFSEMRERGCEPNIHTYTV 114

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           +I+  C      E   +L EM+++G+ P V T+N ++D  CK G ++ A  +L+LM    
Sbjct: 115 MINAMCKETKLEEGRRILDEMVEKGLVPSVPTYNALIDGYCKEGMVEAAQEILDLMHSNS 174

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            NPN  T++ L+ GFC    V+ A  L   M       +V +Y
Sbjct: 175 CNPNERTYNELICGFCRKKNVHRAMALLSKMLESRLTPSVVTY 217



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 133/311 (42%), Gaps = 35/311 (11%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L   + K   +D    +  ++ S+G  PD+Y Y   I+ FC  G +     ++  +
Sbjct: 356 TYTILIVAMLKEGDFDYAHRILDQMVSSGYQPDVYIYTAFIHAFCTRGNIKEAEDMMSMM 415

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 PDA+ +T +I        +  A  +  ++   GC P+  TYS LI  L +   T
Sbjct: 416 FERGVMPDALTYTLVIDAYGGLGLLNPAFDVLKRMFDTGCDPSHHTYSCLIKHLLKEELT 475

Query: 229 I-----------------------------VALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
                                          AL LFE+M          C PN  TY  +
Sbjct: 476 KKYKNVALCDSIPNVFFADVADVWKMMKFETALELFEKMLEHG------CSPNINTYAKL 529

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I GLCK G +  A++LF  M ++ ++P    YNSL++  C    + +A  L+  MM+ G 
Sbjct: 530 IIGLCKVGRLGVAQKLFDHMNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGH 589

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P + + NV+   L + G  ++A  +   ++  G N +   +  L+DG    G  +   E
Sbjct: 590 LPLLESLNVLFCGLYEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSE 649

Query: 380 LFVSMESMGCK 390
           L   ME+ GC+
Sbjct: 650 LLGVMEARGCQ 660



 Score = 55.8 bits (133), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 50/193 (25%), Positives = 78/193 (40%), Gaps = 13/193 (6%)

Query: 111 NLLFGCLA---KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           N+ F  +A   K   ++T L LF+++   G  P++ TY  LI   CK+GR+     +   
Sbjct: 489 NVFFADVADVWKMMKFETALELFEKMLEHGCSPNINTYAKLIIGLCKVGRLGVAQKLFDH 548

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +     +P    + SL+   C      +A  L   +   G  P + + + L  GL   G 
Sbjct: 549 MNERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGLYEEGS 608

Query: 228 TIVALNLFEEMANGNGKFGVVCKPN--TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
              A  +F  +        + C  N   V +  +IDGL K G  D   EL   M+ +   
Sbjct: 609 KEKAKVVFSNL--------LQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQ 660

Query: 286 PDVVTYNSLIHGF 298
               TY  LI G 
Sbjct: 661 IHPQTYRMLIEGL 673



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 1/130 (0%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD+M N R   P    +N L  C  +   Y   + L   +   G  P L + N+L    
Sbjct: 545 LFDHM-NERGVSPSEAIYNSLLNCCCELGIYGDAVRLVGAMMEHGHLPLLESLNVLFCGL 603

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            + G      VV   +L+  +  D VA+  LI GL         + L   ++A GC+ + 
Sbjct: 604 YEEGSKEKAKVVFSNLLQCGYNDDEVAWKILIDGLLKNGLSDGCSELLGVMEARGCQIHP 663

Query: 213 ITYSTLINGL 222
            TY  LI GL
Sbjct: 664 QTYRMLIEGL 673


>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]
          Length = 636

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/281 (32%), Positives = 142/281 (50%), Gaps = 8/281 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN L     K K Y  V  L   + +    PD++TY  ++N  CK G+   GF V
Sbjct: 295 PRNAAFNKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRV 354

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +    + PD V +T++I GLC    + +A  L+ ++   G  PN  TY+ +I+G  +
Sbjct: 355 FKDLKDRGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFK 414

Query: 225 TGHTIVALNLFEEMAN-GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G+   A  ++ EM + G G+        TV+Y  +I GLC  G + +A +LF +M  K 
Sbjct: 415 IGNLEEAWKMYREMCDKGYGE-------KTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKG 467

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  + +TYN+L+ GFC      E   LL E++DQG+QP   ++  ++D+LC+ G M  A 
Sbjct: 468 ILRNHITYNALVRGFCKEGKIVEGANLLYELLDQGIQPSAASYAPLIDKLCQEGDMQNAK 527

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            L + M  RG+ P   T   ++ GFC  G      E   +M
Sbjct: 528 ILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTM 568



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/333 (28%), Positives = 159/333 (47%), Gaps = 15/333 (4%)

Query: 64  ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY 123
           ASLE +++  CK             EA  +F  +  +       T  ++L G + +    
Sbjct: 193 ASLEAYIRCLCKGG--------LVEEAISVFGQLKGIGVCASIATWNSVLRGSV-RAGRI 243

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D V  L+  +  + +  D++T   L+  FC   R+S G  +L R+L     P   AF  L
Sbjct: 244 DFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAAFNKL 303

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           I G C +      + L   + A    P++ TY  ++NGLC+ G       +F+++ +   
Sbjct: 304 ISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKDRG- 362

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                  P+ V YTT+I GLC+  ++  A++L+ +M  K   P+  TYN++IHG+    +
Sbjct: 363 -----YAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGN 417

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
             EA  +  EM D+G     V++NV++  LC +GK+ EA  L E M  +G+  N  T++ 
Sbjct: 418 LEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNA 477

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ GFC  G++     L   +   G + +  SY
Sbjct: 478 LVRGFCKEGKIVEGANLLYELLDQGIQPSAASY 510



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 137/281 (48%), Gaps = 7/281 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E F +F  + +   +P  +    ++ G L + K       L+  +   G  P+ YTYN +
Sbjct: 350 EGFRVFKDLKDRGYAPDRVMYTTMIHG-LCRMKWLGDARKLWFEMIQKGFLPNEYTYNAM 408

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ + K+G +   + +   +    +    V++  +IKGLC+  +I EA  LF ++   G 
Sbjct: 409 IHGYFKIGNLEEAWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGI 468

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N ITY+ L+ G C+ G  +   NL  E+ +         +P+  +Y  +ID LC+EG 
Sbjct: 469 LRNHITYNALVRGFCKEGKIVEGANLLYELLDQG------IQPSAASYAPLIDKLCQEGD 522

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  AK L+  M+++ + P V T++ +I GFC      E    L  M+   ++P   +F  
Sbjct: 523 MQNAKILWDDMQNRGMEPAVCTHDFMITGFCKQGCAMEGMEWLTTMLRSKLRPQKKSFES 582

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++  L +  ++D+A  +L+ M+  G   + S  ++L+   C
Sbjct: 583 LIQCLSQIDRLDDALLVLDSMLKIGFRLSISICNSLVTKLC 623


>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
 gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Cucumis sativus]
          Length = 839

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 153/309 (49%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I  ++ +    P   T  +L+ G   K  + D    +F R+   G  P+  TY+ 
Sbjct: 219 QEAELIMGHIFHYGACPDTFTYTSLIIGH-CKNGNLDLAFEMFDRMVKDGCDPNSVTYSA 277

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C  GR+     +L  ++     P   A+T  I  LC   R  EA  L  K+K  G
Sbjct: 278 LINGLCSEGRLEEAMDMLEEMIDKGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRG 337

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PNV TY+ LI+GL R G   VA+ ++ +M       G+V  P  VTY+ +I+ L  EG
Sbjct: 338 CGPNVQTYTALISGLSRDGKFEVAIGVYHKMLAD----GLV--PTAVTYSALINQLYVEG 391

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             + A  +F  M   +  P+  TYN +I GFC      +A  +  +M+  G  P+V+T+N
Sbjct: 392 RFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYN 451

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +I+    K G M+ A RLLE+M   G+  +T T++ L+ GF   G++ HA  LF  M   
Sbjct: 452 IIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEH 511

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 512 GISPNVVTY 520



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/301 (31%), Positives = 159/301 (52%), Gaps = 11/301 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  IFD ML   PSP  +T +N++     K  + +  + L + +   GL  D +TY  
Sbjct: 429 QKATAIFDQMLKAGPSPNVIT-YNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYAN 487

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F + G++ H F +   ++    +P+ V + ++I G    +++ +A ALF K+   G
Sbjct: 488 LISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMVESG 547

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TY+ +I+G  +T     A N   +M     K G++  PN +TYT+ IDGLCK G
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMV----KQGLL--PNVITYTSFIDGLCKNG 601

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A ++F +MK ++  P++ TY+SLI G C      +A  LL    D G +P+V T+ 
Sbjct: 602 RTSLAFKIFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLL----DDGCEPNVDTYT 657

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LC  G+  EA +L+E M  +G+ P+   +  L+ G C    V  A ++F SM + 
Sbjct: 658 TLVRGLCGKGRCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTT 717

Query: 388 G 388
           G
Sbjct: 718 G 718



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 145/292 (49%), Gaps = 10/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +++ L   L     ++T L++F+ + S    P+  TYN++I  FC +G +     +
Sbjct: 375 PTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKGFCSIGYIQKATAI 434

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L++  +P+ + +  +I     +  +  A  L   +K  G K +  TY+ LI+G  R
Sbjct: 435 FDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLLEMMKGNGLKLDTWTYANLISGFSR 494

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +LF EM     + G+   PN VTY  II+G      VD A  LF +M +   
Sbjct: 495 GGKLEHAFSLFNEMV----EHGI--SPNVVTYNAIINGYLTVAKVDDALALFWKMVESGN 548

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P   TYN +I GF   N  +EA     +M+ QG+ P+V+T+   +D LCKNG+   A +
Sbjct: 549 VPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFK 608

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   M  R   PN  T+S+L+DG C  G+   A+ L       GC+  V +Y
Sbjct: 609 IFHEMKKRDYFPNLCTYSSLIDGLCQEGQAEDAERLLDD----GCEPNVDTY 656



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 91/301 (30%), Positives = 148/301 (49%), Gaps = 11/301 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            AF +F+ M+    SP  +T   ++ G L   K  D  L+LF ++  +G  P   TYN++
Sbjct: 500 HAFSLFNEMVEHGISPNVVTYNAIINGYLTVAK-VDDALALFWKMVESGNVPSSGTYNMM 558

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ F K  R+S      G++++    P+ + +TS I GLC   R   A  +F ++K    
Sbjct: 559 ISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHEMKKRDY 618

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+ TYS+LI+GLC+ G    A  L ++           C+PN  TYTT++ GLC +G 
Sbjct: 619 FPNLCTYSSLIDGLCQEGQAEDAERLLDDG----------CEPNVDTYTTLVRGLCGKGR 668

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A +L   MK K + P    Y +L+ G C   +   A  +   M+  G QP +  +  
Sbjct: 669 CYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQPCLSDYKA 728

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LCK     +A  + + M+ +  N +   ++ L+DG    G  + + EL   MES  
Sbjct: 729 LICALCKANFRQKAQCMFQTMLKKHWNSDEVVWTVLLDGLLKEGETDLSLELLHVMESRN 788

Query: 389 C 389
           C
Sbjct: 789 C 789



 Score =  108 bits (271), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 107/380 (28%), Positives = 166/380 (43%), Gaps = 32/380 (8%)

Query: 23  NFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDI 82
           NFSS  PH   P S IS N    P   +K+   L     +R+S    L           I
Sbjct: 27  NFSSQ-PHPSSPLS-ISSNTDPFPELVSKISIILSSPTWERSSELSHL-----------I 73

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLF----KRLNSTGL 138
             + P+    + D   N         S    F  +++T  +   +S F     RL    L
Sbjct: 74  PKLKPHHVVNLLDTHNNTE-------SVLRFFHWVSRTHFFKHDMSCFVSMLNRLVRDRL 126

Query: 139 FPDLYTYNILINCFCK-MGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEA 196
           F       IL+   C+  G V     VL  I  +  F     +F++L+  L         
Sbjct: 127 FVPADNVRILMIKSCRNEGEVKRVIQVLSEINTTYDFGYTLYSFSTLLIQLGKFDMDGLG 186

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             ++ ++   G +PN+ T++ +I  LC  G    A     E+  G+      C P+T TY
Sbjct: 187 RDVYIEMLNSGIRPNLFTFNAMIKILCNKGKVQEA-----ELIMGHIFHYGAC-PDTFTY 240

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T++I G CK G +D A E+F +M     +P+ VTY++LI+G C      EA  +L EM+D
Sbjct: 241 TSLIIGHCKNGNLDLAFEMFDRMVKDGCDPNSVTYSALINGLCSEGRLEEAMDMLEEMID 300

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G++P V  + + +  LC  G+  EA +LL  M  RG  PN  T++ L+ G    G+   
Sbjct: 301 KGIEPTVHAYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEV 360

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  ++  M + G   T  +Y
Sbjct: 361 AIGVYHKMLADGLVPTAVTY 380


>gi|116309903|emb|CAH66938.1| OSIGBa0116M22.5 [Oryza sativa Indica Group]
          Length = 568

 Score =  164 bits (414), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 86/262 (32%), Positives = 140/262 (53%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++NLL   L           L + +   GL  D++TYNILIN  CK G V     +  
Sbjct: 292 VATYNLLVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFE 351

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R       V +TSLI  L  + ++ E   LF +    G +P+++ Y+ LIN    +G
Sbjct: 352 NMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHSTSG 411

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   A  +  EM            P+ VTY T++ GLC  G VD+A++L  +M  + I P
Sbjct: 412 NIDRAFEIMGEMEKKR------IAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQP 465

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+VTYN+LI G+    D  +A  +  EMM++G  P ++T+N ++  LCKNG+ D+A  ++
Sbjct: 466 DLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMV 525

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
           + M+  G+ P+ ST+ +L++G 
Sbjct: 526 KEMVENGITPDDSTYISLIEGL 547



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 88/301 (29%), Positives = 146/301 (48%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +FD ML      P    +N L G        DT L    R+   G+   + TYN+
Sbjct: 238 DEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVATYNL 297

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++     GR +  + ++  +       D   +  LI G C E  + +A  +F  +   G
Sbjct: 298 LVHALFMDGRGTEAYELVEEMGGKGLALDVFTYNILINGHCKEGNVKKALEIFENMSRRG 357

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  V+TY++LI  L + G       LF+E      + G+  +P+ V Y  +I+     G
Sbjct: 358 VRATVVTYTSLIYALSKKGQVQETDKLFDEAV----RRGI--RPDLVLYNALINSHSTSG 411

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A E+  +M+ K I PD VTYN+L+ G C     +EA  L+ EM  +G+QPD+VT+N
Sbjct: 412 NIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYN 471

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++      G + +A R+   M+ +G NP   T++ L+ G C  G+ + A+ +   M   
Sbjct: 472 TLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVEN 531

Query: 388 G 388
           G
Sbjct: 532 G 532



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 149/302 (49%), Gaps = 9/302 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYNILINCFCKM 155
           +L   P P  +T +N +             L + + +   G + P+ YTY  +I+ +CK+
Sbjct: 176 LLRQMPRPNAVT-YNTVIAGFCSRGRVQAALDIMREMRERGGIAPNQYTYGTVISGWCKV 234

Query: 156 GRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           GRV     V   +L +    P+AV + +LI G C + ++  A     ++   G    V T
Sbjct: 235 GRVDEAVKVFDEMLTKGEVKPEAVMYNALIGGYCDQGKLDTALLYRDRMVERGVAMTVAT 294

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+ L++ L   G    A  L EEM    G  G+    +  TY  +I+G CKEG V KA E
Sbjct: 295 YNLLVHALFMDGRGTEAYELVEEM----GGKGLAL--DVFTYNILINGHCKEGNVKKALE 348

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  M  + +   VVTY SLI+         E + L  E + +G++PD+V +N +++   
Sbjct: 349 IFENMSRRGVRATVVTYTSLIYALSKKGQVQETDKLFDEAVRRGIRPDLVLYNALINSHS 408

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            +G +D A  ++  M  + + P+  T++TLM G CL GRV+ A++L   M   G +  + 
Sbjct: 409 TSGNIDRAFEIMGEMEKKRIAPDDVTYNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLV 468

Query: 395 SY 396
           +Y
Sbjct: 469 TY 470



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 93/185 (50%), Gaps = 12/185 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T++ ++  LC  G    AL L  +M           +PN VTY T+I G C  G V  A 
Sbjct: 156 TFNIMLRHLCSAGKPARALELLRQMP----------RPNAVTYNTVIAGFCSRGRVQAAL 205

Query: 274 ELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMD 331
           ++  +M+++  I P+  TY ++I G+C     +EA  +  EM+ +G V+P+ V +N ++ 
Sbjct: 206 DIMREMRERGGIAPNQYTYGTVISGWCKVGRVDEAVKVFDEMLTKGEVKPEAVMYNALIG 265

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             C  GK+D A    + M+ RGV    +T++ L+    + GR   A EL   M   G   
Sbjct: 266 GYCDQGKLDTALLYRDRMVERGVAMTVATYNLLVHALFMDGRGTEAYELVEEMGGKGLAL 325

Query: 392 TVFSY 396
            VF+Y
Sbjct: 326 DVFTY 330



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 1/135 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + AF I   M   R +P  +T +N L   L      D    L   +   G+ PDL TYN 
Sbjct: 414 DRAFEIMGEMEKKRIAPDDVT-YNTLMRGLCLLGRVDEARKLIDEMTKRGIQPDLVTYNT 472

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +   G V     +   ++   F P  + + +LI+GLC   +  +A  +  ++   G
Sbjct: 473 LISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNALIQGLCKNGQGDDAENMVKEMVENG 532

Query: 208 CKPNVITYSTLINGL 222
             P+  TY +LI GL
Sbjct: 533 ITPDDSTYISLIEGL 547



 Score = 47.8 bits (112), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 1/103 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M   R   P L ++N L    +        L +   + + G  P L TYN 
Sbjct: 449 DEARKLIDEMTK-RGIQPDLVTYNTLISGYSMKGDVKDALRIRNEMMNKGFNPTLLTYNA 507

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
           LI   CK G+      ++  ++ +  TPD   + SLI+GL  E
Sbjct: 508 LIQGLCKNGQGDDAENMVKEMVENGITPDDSTYISLIEGLTTE 550


>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 821

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 96/290 (33%), Positives = 146/290 (50%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L SFN L   L K     +  +++ ++ S+G+ P L T+N +IN  CK G+V    +V  
Sbjct: 162 LYSFNTLLLQLGKFDMVTSAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFN 221

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I +    PDA  +TSLI G C   ++ +A  +F ++   GC PN +TYSTLINGLC  G
Sbjct: 222 KIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEVFDRMVKDGCNPNSVTYSTLINGLCNEG 281

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+++ EEM           +P   TYT  I  LC  G VD A  L   M  K  +P
Sbjct: 282 RIGEAMDMLEEMTEKG------IEPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSP 335

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V TY ++I G   A     A  +  +M+ +G+ P+ VT+N +++ELC  G+   A ++ 
Sbjct: 336 SVQTYTAIISGLFRAGKMELAIGMYHKMLKEGLVPNTVTYNALINELCTEGRFGIALKIF 395

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M   G   N  T++ ++ G      +  A  +F  M   G   TV +Y
Sbjct: 396 DWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVVFNKMLKDGPSPTVVTY 445



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 101/362 (27%), Positives = 160/362 (44%), Gaps = 76/362 (20%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +FN +   L K       + +F ++    L PD +TY  LI   C+  ++   F V
Sbjct: 195 PSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLILGHCRNRKLDKAFEV 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R+++    P++V +++LI GLC E RI EA  +  ++   G +P V TY+  I+ LC 
Sbjct: 255 FDRMVKDGCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVYTYTVPISSLCD 314

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+NL   M    GK G  C P+  TYT II GL + G ++ A  ++ +M  + +
Sbjct: 315 IGRVDDAINLVRSM----GKKG--CSPSVQTYTAIISGLFRAGKMELAIGMYHKMLKEGL 368

Query: 285 NPDVVTYNSLIHGFCYAN---------DWNEANCLLI----------------------- 312
            P+ VTYN+LI+  C            DW E +  L                        
Sbjct: 369 VPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMV 428

Query: 313 ---EMMDQGVQPDVVTFNVIMDE-----------------------------------LC 334
              +M+  G  P VVT+N ++ E                                    C
Sbjct: 429 VFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFC 488

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K GK+D A+     M+  G++PN  T++ ++DG+C  G+++ A  LF  ME  GC  ++ 
Sbjct: 489 KGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASIE 548

Query: 395 SY 396
           +Y
Sbjct: 549 TY 550



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/291 (29%), Positives = 143/291 (49%), Gaps = 10/291 (3%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           F YM+      P   ++  L     K    D+  S F  +   G+ P+ +TY  +I+ +C
Sbjct: 464 FLYMMKESNCEPDERTYCELISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYC 523

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K G++     +  R+  +  +     + ++I GL   +R  EA     K+   G +PN I
Sbjct: 524 KEGKIDVALSLFERMEENGCSASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTI 583

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY++LINGLC+   T +A  +F EM   N      C PN  TYT++I GLC+EG VD A+
Sbjct: 584 TYTSLINGLCKNTATNLAFKIFHEMEKKN------CLPNAHTYTSLIYGLCQEGKVDAAE 637

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            L     +    P + TY++L+ G C     NEA+ L+  M ++G+ P +  +  ++   
Sbjct: 638 RL----TENGCEPTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAH 693

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           CK+ K+D A  +  LM ++G  P+   +  L+   C   R   A  +F S+
Sbjct: 694 CKSLKVDCALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSL 744



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 160/308 (51%), Gaps = 11/308 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F+ ML   PSP  +T +N L     K  + +        +  +   PD  TY  L
Sbjct: 425 KAMVVFNKMLKDGPSPTVVT-YNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCEL 483

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK G++         +L+   +P+   +T++I G C E +I  A +LF +++  GC
Sbjct: 484 ISGFCKGGKLDSATSFFYEMLKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGC 543

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             ++ TY+ +I+GL +      A     +M           +PNT+TYT++I+GLCK   
Sbjct: 544 SASIETYNAIISGLSKGNRFSEAEKFCAKMTEQG------LQPNTITYTSLINGLCKNTA 597

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A ++F +M+ KN  P+  TY SLI+G C     + A      + + G +P + T++ 
Sbjct: 598 TNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAE----RLTENGCEPTIDTYST 653

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++  LC+ G+ +EAS+L+E M  +G++P+   + +L+   C + +V+ A E+F  M   G
Sbjct: 654 LVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKG 713

Query: 389 CKHTVFSY 396
            +  +F Y
Sbjct: 714 FQPHLFIY 721



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L     +   L +F  +   G   +  TYN +I     M  +    VV
Sbjct: 370 PNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKGLFGMDDIEKAMVV 429

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+   +P  V + +LI        +  A      +K   C+P+  TY  LI+G C+
Sbjct: 430 FNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFCK 489

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A + F EM     K G+   PN  TYT +IDG CKEG +D A  LF +M++   
Sbjct: 490 GGKLDSATSFFYEML----KCGI--SPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGC 543

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +  + TYN++I G    N ++EA     +M +QG+QP+ +T+  +++ LCKN   + A +
Sbjct: 544 SASIETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFK 603

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   M  +   PN  T+++L+ G C  G+V+ A+ L       GC+ T+ +Y
Sbjct: 604 IFHEMEKKNCLPNAHTYTSLIYGLCQEGKVDAAERL----TENGCEPTIDTY 651



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 67/261 (25%), Positives = 107/261 (40%), Gaps = 33/261 (12%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N +   L+K   +        ++   GL P+  TY  LIN  CK    +  F +  
Sbjct: 547 IETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGLCKNTATNLAFKIFH 606

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + +    P+A  +TSLI GLC E ++  A     +L   GC+P + TYSTL++GLCR G
Sbjct: 607 EMEKKNCLPNAHTYTSLIYGLCQEGKVDAAE----RLTENGCEPTIDTYSTLVSGLCREG 662

Query: 227 HTIVALNLFEEMANGN----------------GKFGVVC-------------KPNTVTYT 257
            +  A  L E M                        V C             +P+   Y 
Sbjct: 663 RSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVKGFQPHLFIYK 722

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +I  LC     ++A  +F  +  K  N D++ +  L+ G     D +     L  M  +
Sbjct: 723 VLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCMKFLYLMESR 782

Query: 318 GVQPDVVTFNVIMDELCKNGK 338
              P + T+ ++  EL K GK
Sbjct: 783 NCTPSLHTYIILARELSKVGK 803



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 6/163 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L   L +    +    L + +   GL P +  Y  L+   CK  +V     +
Sbjct: 646 PTIDTYSTLVSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEI 705

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +    F P    +  LI  LC  SR  EA  +F  L       ++I ++ L++GL +
Sbjct: 706 FNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQ 765

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            G + + +     M + N      C P+  TY  +   L K G
Sbjct: 766 EGDSDLCMKFLYLMESRN------CTPSLHTYIILARELSKVG 802


>gi|414885390|tpg|DAA61404.1| TPA: hypothetical protein ZEAMMB73_280584 [Zea mays]
          Length = 645

 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 111/388 (28%), Positives = 177/388 (45%), Gaps = 67/388 (17%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLF------GCLAKTKH-YDTV 126
           C +   G + A  P  A+ +FD ML  R   P + ++N L       G +AK +  +D +
Sbjct: 154 CNAVLDGLVKARRPGCAWELFDEMLR-RGLVPSVVTYNTLINACRFQGTVAKAQEVWDQM 212

Query: 127 LS----------------------------LFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           ++                            LF  +   G+ P+ YTYN+L++  C+   V
Sbjct: 213 VAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDV 272

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
           +   V+   +L+S   P+AV FT+LI G C   R  EA  +F ++  FG  P V  Y++L
Sbjct: 273 NSAVVLYQELLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSL 332

Query: 219 INGLCRTGHTIVALNLFEEMAN------------------GNGKFGVVCK---------- 250
           ++G  R+G+   AL L++EM                      G+  V  +          
Sbjct: 333 MDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRFLQGVQEDGV 392

Query: 251 -PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
             N   Y  +ID  C+ G +++A     +M +  I P+VV+Y+SLI G         A  
Sbjct: 393 NLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSKRGKMQIAMA 452

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +  EM+ +G++P+VVT+  ++    KNG +D A RL + MI  G++PN  T S L+DG C
Sbjct: 453 IYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIENGISPNAITVSVLVDGLC 512

Query: 370 LTGRVNHAKELFVSMESMGCK--HTVFS 395
              RV  A    +    + C   H+VFS
Sbjct: 513 RENRVQEAVRFVMEYSGLKCSDIHSVFS 540



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 99/309 (32%), Positives = 153/309 (49%), Gaps = 10/309 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  +  +    P L + N +   L K +       LF  +   GL P + TYN 
Sbjct: 136 DEALYVFRRLRTL----PALPACNAVLDGLVKARRPGCAWELFDEMLRRGLVPSVVTYNT 191

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN     G V+    V  +++     P+ V +T++I  LC E  I +A  LF  +K  G
Sbjct: 192 LINACRFQGTVAKAQEVWDQMVAQQIDPNVVTYTTMICALCEEGCIGDAERLFDAMKEAG 251

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN  TY+ L++G C+      A+ L++E+     K G+   PN V +TT+IDG CK  
Sbjct: 252 MQPNQYTYNVLMSGHCQRDDVNSAVVLYQELL----KSGL--NPNAVIFTTLIDGFCKAK 305

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AK +FL+M    + P V  YNSL+ G   + +  EA  L  EM   G+ PD  T +
Sbjct: 306 RFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCS 365

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  LC  G+M  A R L+ +   GVN N + ++ L+D +C  G +  A      M  +
Sbjct: 366 IVVRGLCDGGQMHVADRFLQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEV 425

Query: 388 GCKHTVFSY 396
           G +  V SY
Sbjct: 426 GIEPNVVSY 434



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 80/243 (32%), Positives = 121/243 (49%), Gaps = 11/243 (4%)

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +L+    +MG +     V  R LR+   P   A  +++ GL    R   A  LF ++   
Sbjct: 124 VLVIALSQMGLLDEALYVFRR-LRT--LPALPACNAVLDGLVKARRPGCAWELFDEMLRR 180

Query: 207 GCKPNVITYSTLINGLCRTGHTIV-ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           G  P+V+TY+TLIN  CR   T+  A  ++++M            PN VTYTT+I  LC+
Sbjct: 181 GLVPSVVTYNTLINA-CRFQGTVAKAQEVWDQMVAQQ------IDPNVVTYTTMICALCE 233

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG +  A+ LF  MK+  + P+  TYN L+ G C  +D N A  L  E++  G+ P+ V 
Sbjct: 234 EGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQELLKSGLNPNAVI 293

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F  ++D  CK  +  EA  +   M   GV P    +++LMDG   +G    A  L+  M 
Sbjct: 294 FTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVYNSLMDGAFRSGNAQEALALYQEMT 353

Query: 386 SMG 388
            +G
Sbjct: 354 RLG 356



 Score =  117 bits (294), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 75/228 (32%), Positives = 119/228 (52%), Gaps = 9/228 (3%)

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           L S  T  A A   L+  L     + EA  +F +L+     P +   + +++GL +    
Sbjct: 111 LSSTSTTPAPALGVLVIALSQMGLLDEALYVFRRLRTL---PALPACNAVLDGLVKARRP 167

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  LF+EM     + G+V  P+ VTY T+I+    +G V KA+E++ QM  + I+P+V
Sbjct: 168 GCAWELFDEML----RRGLV--PSVVTYNTLINACRFQGTVAKAQEVWDQMVAQQIDPNV 221

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY ++I   C      +A  L   M + G+QP+  T+NV+M   C+   ++ A  L + 
Sbjct: 222 VTYTTMICALCEEGCIGDAERLFDAMKEAGMQPNQYTYNVLMSGHCQRDDVNSAVVLYQE 281

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++  G+NPN   F+TL+DGFC   R + AK +F+ M   G   TV  Y
Sbjct: 282 LLKSGLNPNAVIFTTLIDGFCKAKRFSEAKGMFLEMPRFGVAPTVPVY 329



 Score =  104 bits (259), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/304 (24%), Positives = 130/304 (42%), Gaps = 58/304 (19%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT-------------------- 144
           P +  +N L     ++ +    L+L++ +   GL PD +T                    
Sbjct: 324 PTVPVYNSLMDGAFRSGNAQEALALYQEMTRLGLCPDEFTCSIVVRGLCDGGQMHVADRF 383

Query: 145 ---------------YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
                          YN LI+ +C++G +        R+      P+ V+++SLI G   
Sbjct: 384 LQGVQEDGVNLNAAAYNALIDEYCRIGNLEEALATCTRMTEVGIEPNVVSYSSLIDGHSK 443

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
             ++  A A++T++ A G +PNV+TY+ LI+G  + G    A  L +EM   NG      
Sbjct: 444 RGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRLHKEMIE-NG-----I 497

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQ-----------------MKDKNINPDVVTYN 292
            PN +T + ++DGLC+E  V +A    ++                 ++++ + P+ V Y 
Sbjct: 498 SPNAITVSVLVDGLCRENRVQEAVRFVMEYSGLKCSDIHSVFSNFTIEEECLIPNSVIYM 557

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           +LI+G        EA  L   M   G+ PD  T+ +++   C  G +  A  L   M+  
Sbjct: 558 TLIYGLYLDGQHCEAGKLFSYMRKSGMIPDSFTYTLLIRGQCMLGYVLNAMMLYADMMKI 617

Query: 353 GVNP 356
           GV P
Sbjct: 618 GVKP 621


>gi|255660852|gb|ACU25595.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 147/274 (53%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L + +++  V   +K +   G    LY +NIL+  FCK G +     V   I +    P 
Sbjct: 111 LMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +LI G      + E   L + + A G +P+V TYS LINGLC+ G    A  LF 
Sbjct: 171 VVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+I G CK   VD A E++ QM  + ++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   +  + + L+ EM+  G++PD +++  ++D  CK G ++ A  L   MI   +  
Sbjct: 285 GLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+   C  GR + A+++   M S+G K
Sbjct: 345 DDVAYTALISCLCREGRASDAEKMLREMLSVGLK 378



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 139/257 (54%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   ++++G  PD+YTY+ILIN  CK G++     +
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   ++  A  ++ ++ + G  P++ITY+TLI GLC+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G      +L +EM  NG        KP+ ++YTT+IDG CKEG ++ A EL  +M  ++
Sbjct: 289 KGELKQVHDLIDEMIMNG-------LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQES 341

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D V Y +LI   C     ++A  +L EM+  G++PD  T+ +I++E CK      AS
Sbjct: 342 IRLDDVAYTALISCLCREGRASDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTAS 401

Query: 344 RLLELMILRGVNPNTST 360
           +LL  M   G  P   T
Sbjct: 402 KLLREMQRDGPLPGVVT 418



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 147/285 (51%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N LIN + K+G +  GF 
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC E ++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +     +A+ ++++M +          P+ +TY T+I GLCK+G + +  +L  +M    
Sbjct: 253 KNEKVDLAMEIYKQMLSQG------LSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD ++Y +LI G C   D   A  L  +M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRASDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC       A +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L+   C+ G   +A ++F+ +     K+G+  +P+ V++ T+I+G  K 
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAIT----KWGL--RPSVVSFNTLINGYIKL 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M      PDV TY+ LI+G C     +EAN L  EM+D G+ P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++   CKN K+D A  + + M+ +G++P+  T++TL+ G C  G +    +L   M  
Sbjct: 245 TTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIM 304

Query: 387 MGCKHTVFSY 396
            G K    SY
Sbjct: 305 NGLKPDKISY 314



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/195 (21%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC     I A +L + + +  GK      F  +       + +   ++ ++ 
Sbjct: 15  SYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQRSDFYVFSGLMI 74

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GFV  A + F   K   I     T   ++        +        E+++ G   
Sbjct: 75  AYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +   G+ P+  +F+TL++G+   G ++    L 
Sbjct: 135 SLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHASGAQPDVYTY 209


>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
 gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
 gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
 gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 704

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 100/327 (30%), Positives = 153/327 (46%), Gaps = 43/327 (13%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++ +L     K    D  +   K +   GL  DL  Y  LI  FC  G +  G  +  
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L    +P A+ + +LI+G C   ++ EA+ +F  +   G +PNV TY+ LI+GLC  G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVG 331

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T  AL L   M   +       +PN VTY  II+ LCK+G V  A E+   MK +   P
Sbjct: 332 KTKEALQLLNLMIEKDE------EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDELCKNGKMDEASR 344
           D +TYN L+ G C   D +EA+ LL  M+       PDV+++N ++  LCK  ++ +A  
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALD 445

Query: 345 LLELMILR--------------------GVNP---------------NTSTFSTLMDGFC 369
           + +L++ +                     VN                N+ T++ ++DGFC
Sbjct: 446 IYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFC 505

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            TG +N AK L   M     + +VF Y
Sbjct: 506 KTGMLNVAKGLLCKMRVSELQPSVFDY 532



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/271 (30%), Positives = 141/271 (52%), Gaps = 6/271 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L ++++++   S ++++  T  F +  + + L+ C+ +M +    F VL  +L+
Sbjct: 76  NNLMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLK 135

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
             F  +      L+KGLC      +A +L  +++     P+V +Y+T+I G C       
Sbjct: 136 RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEK 195

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           AL L  EM  G+G     C  + VT+  +ID  CK G +D+A     +MK   +  D+V 
Sbjct: 196 ALELANEM-KGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVV 249

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y SLI GFC   + +    L  E++++G  P  +T+N ++   CK G++ EAS + E MI
Sbjct: 250 YTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMI 309

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            RGV PN  T++ L+DG C  G+   A +L 
Sbjct: 310 ERGVRPNVYTYTGLIDGLCGVGKTKEALQLL 340



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 150/292 (51%), Gaps = 9/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +     + K  +  L L   +  +G    L T+ ILI+ FCK G++      
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       D V +TSLI+G C    +    ALF ++   G  P  ITY+TLI G C+
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +FE M     + GV  +PN  TYT +IDGLC  G   +A +L   M +K+ 
Sbjct: 295 LGQLKEASEIFEFMI----ERGV--RPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDE 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN +I+  C      +A  ++  M  +  +PD +T+N+++  LC  G +DEAS+
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408

Query: 345 LLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELF-VSMESMGCKHTV 393
           LL LM+      +P+  +++ L+ G C   R++ A +++ + +E +G    V
Sbjct: 409 LLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 148/296 (50%), Gaps = 9/296 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   ML  R     + + N+L   L +       +SL + +    L PD+++YN +I
Sbjct: 126 AFGVLALMLK-RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVI 184

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             FC+   +     +   +  S  +   V +  LI   C   ++ EA     ++K  G +
Sbjct: 185 RGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLE 244

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            +++ Y++LI G C  G       LF+E +  G+        P  +TY T+I G CK G 
Sbjct: 245 ADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCKLGQ 297

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A E+F  M ++ + P+V TY  LI G C      EA  LL  M+++  +P+ VT+N+
Sbjct: 298 LKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYNI 357

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           I+++LCK+G + +A  ++ELM  R   P+  T++ L+ G C  G ++ A +L   M
Sbjct: 358 IINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM 413



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 157/312 (50%), Gaps = 13/312 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EA  IF++M+     P   T   L+ G   + KTK    +L+L    +     P+  TYN
Sbjct: 300 EASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEE---PNAVTYN 356

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKA 205
           I+IN  CK G V+    ++  + +    PD + +  L+ GLCA+  + EA+ L +  LK 
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKD 416

Query: 206 FG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
                P+VI+Y+ LI+GLC+      AL++++ +     K G     + VT   +++   
Sbjct: 417 SSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE---KLGA---GDRVTTNILLNSTL 470

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G V+KA EL+ Q+ D  I  +  TY ++I GFC     N A  LL +M    +QP V 
Sbjct: 471 KAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVF 530

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +N ++  LCK G +D+A RL E M      P+  +F+ ++DG    G +  A+ L V M
Sbjct: 531 DYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM 590

Query: 385 ESMGCKHTVFSY 396
              G    +F+Y
Sbjct: 591 SRAGLSPDLFTY 602



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 143/278 (51%), Gaps = 6/278 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S + L  C  + +       +   +   G   ++Y +NIL+   C+         +L  
Sbjct: 108 VSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLRE 167

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + R+   PD  ++ ++I+G C    + +A  L  ++K  GC  +++T+  LI+  C+ G 
Sbjct: 168 MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGK 227

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+   +EM     KF +  + + V YT++I G C  G +D+ K LF ++ ++  +P 
Sbjct: 228 MDEAMGFLKEM-----KF-MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPC 281

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            +TYN+LI GFC      EA+ +   M+++GV+P+V T+  ++D LC  GK  EA +LL 
Sbjct: 282 AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLN 341

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           LMI +   PN  T++ +++  C  G V  A E+   M+
Sbjct: 342 LMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMK 379



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 153/324 (47%), Gaps = 34/324 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + + M+     P  +T +N++   L K       + + + +      PD  TYNIL
Sbjct: 335 EALQLLNLMIEKDEEPNAVT-YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 149 INCFCKMGRVSHGFVVLGRILR-SCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +   C  G +     +L  +L+ S +T PD +++ +LI GLC E+R+ +A  ++  L   
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------------NGK 244
               + +T + L+N   + G    A+ L++++++                       N  
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 245 FGVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
            G++CK       P+   Y  ++  LCKEG +D+A  LF +M+  N  PDVV++N +I G
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDG 573

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
              A D   A  LL+ M   G+ PD+ T++ +++   K G +DEA    + M+  G  P+
Sbjct: 574 SLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633

Query: 358 TSTFSTLMDGFCLT-GRVNHAKEL 380
                +++  +C++ G  +   EL
Sbjct: 634 AHICDSVLK-YCISQGETDKLTEL 656



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 6/267 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P + S+N L   L K       L ++  L       D  T NIL+N   K G V+   
Sbjct: 420 TDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAM 479

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +  +I  S    ++  +T++I G C    +  A  L  K++    +P+V  Y+ L++ L
Sbjct: 480 ELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSL 539

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A  LFEEM   N        P+ V++  +IDG  K G +  A+ L + M   
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNF------PDVVSFNIMIDGSLKAGDIKSAESLLVGMSRA 593

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            ++PD+ TY+ LI+ F      +EA     +M+D G +PD    + ++      G+ D+ 
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKL 653

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFC 369
           + L++ ++ + +  +     T+MD  C
Sbjct: 654 TELVKKLVDKDIVLDKELTCTVMDYMC 680



 Score = 84.3 bits (207), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/262 (23%), Positives = 128/262 (48%), Gaps = 8/262 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I+D ++    +   +T+ N+L     K    +  + L+K+++ + +  +  TY  
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G ++    +L ++  S   P    +  L+  LC E  + +A  LF +++   
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V++++ +I+G  + G    A    E +  G  + G+   P+  TY+ +I+   K G
Sbjct: 560 NFPDVVSFNIMIDGSLKAGDIKSA----ESLLVGMSRAGL--SPDLFTYSKLINRFLKLG 613

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           ++D+A   F +M D    PD    +S++       + ++   L+ +++D+ +  D     
Sbjct: 614 YLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTC 673

Query: 328 VIMDELCK-NGKMDEASRLLEL 348
            +MD +C  +  MD A RLL +
Sbjct: 674 TVMDYMCNSSANMDLAKRLLRV 695



 Score = 42.7 bits (99), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+ +G   +V   N+++  LC+N +  +A  LL  M    + P+  +++T++ GFC    
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           +  A EL   M+  GC  ++ ++
Sbjct: 193 LEKALELANEMKGSGCSWSLVTW 215


>gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa]
 gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa]
          Length = 745

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/282 (31%), Positives = 148/282 (52%), Gaps = 12/282 (4%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           G L+  + Y      F  L  + L PD+  YNI+I+ + K+G V     +  R+     T
Sbjct: 410 GMLSDARMY------FDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAIT 463

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P  V F SLI G C   +++EA  L   +K  G +P+ +TY+TL+N  C  G+      L
Sbjct: 464 PSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHEL 523

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
             EM   +       +P  VTYT +I GLCK+  ++++ +L   M+ K + PD +TYN++
Sbjct: 524 LLEMNLKD------IEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTI 577

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I  FC A D  +A  LL +M+   ++P   T+NV++D LC+ G +++A R+L  +  R +
Sbjct: 578 IQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNI 637

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N     ++T++   C+ G    A ++F  M   G + ++  Y
Sbjct: 638 NLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDY 679



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/316 (29%), Positives = 154/316 (48%), Gaps = 29/316 (9%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +++L   L K    D  L L   + +  L PDL TY+ILI+  CK G+V     +   + 
Sbjct: 329 YSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMC 388

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +   P++ A + ++KGLC +  + +A   F  L     +P+V  Y+ +I+G  + G   
Sbjct: 389 FNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVE 448

Query: 230 VALNLFEEMANGNGKFGVV---------CK--------------------PNTVTYTTII 260
            A+ L++ + +      +V         CK                    P+ VTYTT++
Sbjct: 449 EAVRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLM 508

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           +  C+EG ++K  EL L+M  K+I P VVTY  +I G C      E+  LL +M  +G+ 
Sbjct: 509 NAYCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLA 568

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD +T+N I+   CK   M +A  LL+ M++  + P  +T++ L+DG C  G V  A  +
Sbjct: 569 PDQITYNTIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRV 628

Query: 381 FVSMESMGCKHTVFSY 396
            VS++      T  +Y
Sbjct: 629 LVSLQDRNINLTKVAY 644



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/304 (27%), Positives = 150/304 (49%), Gaps = 6/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I   ML      P L ++ +L     +  + +  L L + L S+G   ++  Y++L++  
Sbjct: 277 IIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSSL 336

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G+V     +L  +  +   PD V ++ LI GLC + ++ +A  L+ ++      PN 
Sbjct: 337 CKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNS 396

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             +S ++ GLC  G    A   F+ +   N       +P+   Y  +IDG  K G V++A
Sbjct: 397 FAHSGILKGLCEKGMLSDARMYFDSLIMSN------LRPDVTLYNIMIDGYVKLGDVEEA 450

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L+ +++DK I P +VT+NSLI+GFC      EA  LL  +   G++P  VT+  +M+ 
Sbjct: 451 VRLYKRLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNA 510

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            C+ G +++   LL  M L+ + P   T++ ++ G C   ++  + +L   M + G    
Sbjct: 511 YCEEGNINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPD 570

Query: 393 VFSY 396
             +Y
Sbjct: 571 QITY 574



 Score =  144 bits (364), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 139/287 (48%), Gaps = 6/287 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L     K +       L + +   GL P   TY  L+N +C+ G ++    +
Sbjct: 464 PSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEGNINKLHEL 523

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P  V +T +IKGLC + ++ E+  L   ++A G  P+ ITY+T+I   C+
Sbjct: 524 LLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCK 583

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L ++M   N       +P   TY  +IDGLC+ G V+ A  + + ++D+NI
Sbjct: 584 AKDMRKAFELLDDMLIHN------LEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNI 637

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N   V Y ++I   C   D   A  +  +M+++G +  +  ++ +++ LCK   ++EA  
Sbjct: 638 NLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEAKY 697

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
              +M+  GV+P+   F  +++ F   G V+   EL   M   G  H
Sbjct: 698 YFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLH 744



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 149/329 (45%), Gaps = 42/329 (12%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P + SFN +     K    D   S F  +   G+ PD Y+YNILI+     G +     
Sbjct: 182 APSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALE 241

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGL 222
           +   + +    PD V +  + KG      +  A  +  K L   G KP+++TY+ LI G 
Sbjct: 242 LTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGH 301

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G+   AL L  ++ +   +       N + Y+ ++  LCK G VD+A +L  +M+  
Sbjct: 302 CQMGNIEEALRLRRDLLSSGFQL------NVILYSVLLSSLCKRGQVDEALQLLYEMEAN 355

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEM---------------------------- 314
           N+ PD+VTY+ LIHG C      +A  L  EM                            
Sbjct: 356 NLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDA 415

Query: 315 -------MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                  +   ++PDV  +N+++D   K G ++EA RL + +  + + P+  TF++L+ G
Sbjct: 416 RMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYKRLRDKAITPSIVTFNSLIYG 475

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           FC   +V  A+ L  S++  G + +  +Y
Sbjct: 476 FCKNRKVVEARRLLESIKLHGLEPSAVTY 504



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 174/373 (46%), Gaps = 26/373 (6%)

Query: 16  SISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKD-RASLEQFLKERC 74
           ++S    +F + F H  + +     +  S    +  L    R   KD R  L+Q L+E  
Sbjct: 37  NLSVQNADFVADFYHLSRNEFGFQHSRVSRFLVSHVLARKRRF--KDLRLVLDQMLQE-- 92

Query: 75  KSSGQGDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKR 132
                 ++ +   ++A  +   M   N+RPS   + ++N L   L   +H D +  ++  
Sbjct: 93  ------EVASRMVHDALFVLVKMKEQNLRPS---IQTYNSL---LYNLRHTDIMWDVYND 140

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           +  +G      T +I+++  C   R     + L +     F P  V+F +++   C    
Sbjct: 141 IKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGL 200

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
              A + F  +  +G  P+  +Y+ LI+GL   G    AL    E+ N   K G+  +P+
Sbjct: 201 ADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEAL----ELTNDMEKQGL--QPD 254

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
            VTY  +  G    G +  A+E+  +M  D+ + PD+VTY  LI G C   +  EA  L 
Sbjct: 255 MVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLR 314

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            +++  G Q +V+ ++V++  LCK G++DEA +LL  M    + P+  T+S L+ G C  
Sbjct: 315 RDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQ 374

Query: 372 GRVNHAKELFVSM 384
           G+V  A +L+  M
Sbjct: 375 GKVQQAIQLYKEM 387



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 81/296 (27%), Positives = 145/296 (48%), Gaps = 11/296 (3%)

Query: 93  IFDYMLNMRPSPPPL---TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNIL 148
           ++D   +++ S  P    TS  ++ G   +++  D VL  F R N    F P + ++N +
Sbjct: 134 MWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVL--FLRQNDGKEFAPSVVSFNTI 191

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ +CK+G           +L+    PD  ++  LI GL     + EA  L   ++  G 
Sbjct: 192 MSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGL 251

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+++TY  +  G    G    A  + ++M    G      KP+ VTYT +I G C+ G 
Sbjct: 252 QPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEG-----LKPDLVTYTVLICGHCQMGN 306

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A  L   +       +V+ Y+ L+   C     +EA  LL EM    +QPD+VT+++
Sbjct: 307 IEEALRLRRDLLSSGFQLNVILYSVLLSSLCKRGQVDEALQLLYEMEANNLQPDLVTYSI 366

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++  LCK GK+ +A +L + M    + PN+   S ++ G C  G ++ A+  F S+
Sbjct: 367 LIHGLCKQGKVQQAIQLYKEMCFNRIFPNSFAHSGILKGLCEKGMLSDARMYFDSL 422



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 57/225 (25%), Positives = 101/225 (44%), Gaps = 6/225 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N++   P + ++ ++   L K +  +  + L + + + GL PD  TYN +I CFCK   
Sbjct: 527 MNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYNTIIQCFCKAKD 586

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +   F +L  +L     P    +  LI GLC    + +A  +   L+        + Y+T
Sbjct: 587 MRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDRNINLTKVAYTT 646

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           +I   C  G    A+ +F +M      F V  K     Y+ +I+ LCK   +++AK  F 
Sbjct: 647 MIKAHCVKGDAQRAVKVFHQMVEKG--FEVSIKD----YSAVINRLCKRCLINEAKYYFC 700

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
            M    ++PD   +  +++ F  A   +    LL  M+  G+  D
Sbjct: 701 IMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745



 Score = 91.7 bits (226), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 117/269 (43%), Gaps = 38/269 (14%)

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           VSH   VL R  R  F    +    +++   A   + +A  +  K+K    +P++ TY++
Sbjct: 69  VSH---VLARKRR--FKDLRLVLDQMLQEEVASRMVHDALFVLVKMKEQNLRPSIQTYNS 123

Query: 218 LINGLCRTGHTIVALNLFEEMAN------------------GNGKF-----------GVV 248
           L+  L    HT +  +++ ++ +                  G  +F           G  
Sbjct: 124 LLYNL---RHTDIMWDVYNDIKDSGTPQSARTSSIIVDGLCGQSRFRDAVLFLRQNDGKE 180

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P+ V++ TI+   CK G  D AK  F  M    I PD  +YN LIHG   A    EA 
Sbjct: 181 FAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYGILPDTYSYNILIHGLIVAGSMEEAL 240

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL-RGVNPNTSTFSTLMDG 367
            L  +M  QG+QPD+VT+ ++       G M  A  +++ M+   G+ P+  T++ L+ G
Sbjct: 241 ELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAREIIQKMLTDEGLKPDLVTYTVLICG 300

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  G +  A  L   + S G +  V  Y
Sbjct: 301 HCQMGNIEEALRLRRDLLSSGFQLNVILY 329


>gi|356558657|ref|XP_003547620.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g55840-like [Glycine max]
          Length = 1078

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 97/328 (29%), Positives = 162/328 (49%), Gaps = 41/328 (12%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y++  R   P + + N++ G L K +  D   S FK + + G+ PD+ T+NIL+N  C+ 
Sbjct: 129 YLMGFRGLNPSVYTCNMVLGSLVKEQKVDMFWSFFKGMLAKGICPDVATFNILLNALCER 188

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+  +   +L ++  S   P AV + +L+   C + R   A+ L   + + G   +V TY
Sbjct: 189 GKFKNAGFLLRKMEESGVYPTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTY 248

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           +  I+ LCR   +     L + M         +  PN +TY T+I G  +EG ++ A ++
Sbjct: 249 NVFIDNLCRDSRSAKGYLLLKRMRRN------MVYPNEITYNTLISGFVREGKIEVATKV 302

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM----- 330
           F +M   N+ P+ +TYN+LI G C   +  EA  L+  M+  G++P+ VT+  ++     
Sbjct: 303 FDEMSLFNLLPNSITYNTLIAGHCTTGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYK 362

Query: 331 ------------------------------DELCKNGKMDEASRLLELMILRGVNPNTST 360
                                         D LCKNG ++EA +LL+ M+   VNP+  T
Sbjct: 363 NAEFGMVSSILERMRMGGVRVSHISYTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVT 422

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMG 388
           FS L++GF   G++N+AKE+   M   G
Sbjct: 423 FSVLINGFFRVGKINNAKEIMCKMYKTG 450



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 165/356 (46%), Gaps = 64/356 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     K   Y     L   + S G+  D+ TYN+ I+  C+  R + G+++
Sbjct: 208 PTAVTYNTLLNWYCKKGRYKAASQLIDCMASKGIGVDVCTYNVFIDNLCRDSRSAKGYLL 267

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+ R+   P+ + + +LI G   E +I  A  +F ++  F   PN ITY+TLI G C 
Sbjct: 268 LKRMRRNMVYPNEITYNTLISGFVREGKIEVATKVFDEMSLFNLLPNSITYNTLIAGHCT 327

Query: 225 TGHTIVALNLFEEMA---------------NG---NGKFGVV-----------CKPNTVT 255
           TG+   AL L + M                NG   N +FG+V            + + ++
Sbjct: 328 TGNIGEALRLMDVMVSHGLRPNEVTYGALLNGLYKNAEFGMVSSILERMRMGGVRVSHIS 387

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YT +IDGLCK G +++A +L   M   ++NPDVVT++ LI+GF      N A  ++ +M 
Sbjct: 388 YTAMIDGLCKNGMLEEAVQLLDDMLKVSVNPDVVTFSVLINGFFRVGKINNAKEIMCKMY 447

Query: 316 DQGVQPDVVTF-----------------------------------NVIMDELCKNGKMD 340
             G+ P+ + +                                   NV++   C+ GK++
Sbjct: 448 KTGLVPNGILYSTLIYNYCKMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLE 507

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           EA   +  M   G++PN+ TF  +++G+  +G    A  +F  M S G   ++F+Y
Sbjct: 508 EAEYFMNHMSRMGLDPNSVTFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTY 563



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 145/301 (48%), Gaps = 12/301 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M N     P L ++  L   L    H +  L  F RL       D   +N  
Sbjct: 543 KAFSVFDKM-NSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRLRCIPNAVDNVIFNTK 601

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+ G +S    ++  ++ + F PD   +T+LI GLC + +I+ A  L  K    G 
Sbjct: 602 LTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGL 661

Query: 209 -KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN   Y++L++GL + GH   AL +FEEM N +       +P+TV +  IID   ++G
Sbjct: 662 LSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKD------VEPDTVAFNVIIDQYSRKG 715

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI--EMMDQGVQPDVVT 325
              K  ++   MK KN+  ++ TYN L+HG  YA     A C ++  +M+  G  PD  +
Sbjct: 716 KTSKVNDILSTMKSKNLCFNLATYNILLHG--YAKRHAMARCFMLYKDMIRHGFLPDKFS 773

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++ ++   C++   D A ++L  + L G   +  TF+ L+  FC    +  A EL   M 
Sbjct: 774 WHSLILGYCQSKSFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMN 833

Query: 386 S 386
            
Sbjct: 834 Q 834



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 134/279 (48%), Gaps = 7/279 (2%)

Query: 91   FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
            F ++  M+     P   +  +L+ G   ++K +D  + + + +   G   D +T+N+LI 
Sbjct: 756  FMLYKDMIRHGFLPDKFSWHSLILG-YCQSKSFDVAIKILRWITLEGHVIDRFTFNMLIT 814

Query: 151  CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
             FC+   +   F ++ ++ +    P+   + +L  GL   S   +A  +   L   G  P
Sbjct: 815  KFCERNEMKKAFELVKQMNQFMVIPNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVP 874

Query: 211  NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
                Y TLING+CR G+   A+ L +EM       G+    + V  + I+ GL     ++
Sbjct: 875  TNKQYITLINGMCRVGNIKGAMKLQDEMKT----LGI--SSHNVAMSAIVRGLANSKKIE 928

Query: 271  KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
             A  +   M +  I P V T+ +L+H +C   +  +A  L   M    V+ DVV +NV++
Sbjct: 929  NAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHVKLDVVAYNVLI 988

Query: 331  DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
              LC NG ++ A +L E M  R + PNTS +  L+D FC
Sbjct: 989  SGLCANGDIEAAFKLYEEMKQRDLWPNTSIYIVLIDSFC 1027



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 131/280 (46%), Gaps = 30/280 (10%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K  +    L+ +  +N +G   D +T N+L+  FC+ G++      +  + R    P++V
Sbjct: 467 KMGYLKEALNAYAVMNHSGHVADHFTCNVLVATFCRYGKLEEAEYFMNHMSRMGLDPNSV 526

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            F  +I G       ++A ++F K+ +FG  P++ TY  L+ GLC  GH   AL  F  +
Sbjct: 527 TFDCIINGYGNSGDALKAFSVFDKMNSFGHFPSLFTYGGLLKGLCIGGHINEALKFFHRL 586

Query: 239 A---NG------NGKFGVVCK--------------------PNTVTYTTIIDGLCKEGFV 269
               N       N K    C+                    P+  TYT +I GLCK+G +
Sbjct: 587 RCIPNAVDNVIFNTKLTSTCRSGNLSDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKI 646

Query: 270 DKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             A  L  +  +K  ++P+   Y SL+ G         A  +  EM+++ V+PD V FNV
Sbjct: 647 VAALLLSGKAIEKGLLSPNPAVYTSLVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNV 706

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           I+D+  + GK  + + +L  M  + +  N +T++ L+ G+
Sbjct: 707 IIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILLHGY 746



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 83/307 (27%), Positives = 136/307 (44%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  IF+ MLN +   P   +FN++    ++      V  +   + S  L  +L TYNIL+
Sbjct: 685 ALYIFEEMLN-KDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKNLCFNLATYNILL 743

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + + K   ++  F++   ++R  F PD  ++ SLI G C       A  +   +   G  
Sbjct: 744 HGYAKRHAMARCFMLYKDMIRHGFLPDKFSWHSLILGYCQSKSFDVAIKILRWITLEGHV 803

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            +  T++ LI   C       A  L ++M     +F V+  PN  TY  + +GL +    
Sbjct: 804 IDRFTFNMLITKFCERNEMKKAFELVKQM----NQFMVI--PNVDTYNALFNGLIRTSDF 857

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA  +   + +    P    Y +LI+G C   +   A  L  EM   G+    V  + I
Sbjct: 858 HKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTLGISSHNVAMSAI 917

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +  L  + K++ A  +L+LM+   + P  +TF+TLM  +C    V  A EL   ME    
Sbjct: 918 VRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCKEANVAKALELRSIMEHCHV 977

Query: 390 KHTVFSY 396
           K  V +Y
Sbjct: 978 KLDVVAY 984



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 70/301 (23%), Positives = 135/301 (44%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + + M+     P   T  NL+ G   K K    +L   K +    L P+   Y  
Sbjct: 612 SDAIALINEMVTNDFLPDNFTYTNLIAGLCKKGKIVAALLLSGKAIEKGLLSPNPAVYTS 671

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K G       +   +L     PD VAF  +I     + +  +   + + +K+  
Sbjct: 672 LVDGLLKHGHARAALYIFEEMLNKDVEPDTVAFNVIIDQYSRKGKTSKVNDILSTMKSKN 731

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              N+ TY+ L++G  +         L+++M     + G +  P+  ++ ++I G C+  
Sbjct: 732 LCFNLATYNILLHGYAKRHAMARCFMLYKDMI----RHGFL--PDKFSWHSLILGYCQSK 785

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D A ++   +  +    D  T+N LI  FC  N+  +A  L+ +M    V P+V T+N
Sbjct: 786 SFDVAIKILRWITLEGHVIDRFTFNMLITKFCERNEMKKAFELVKQMNQFMVIPNVDTYN 845

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            + + L +     +A R+L++++  G  P    + TL++G C  G +  A +L   M+++
Sbjct: 846 ALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKLQDEMKTL 905

Query: 388 G 388
           G
Sbjct: 906 G 906



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 99/213 (46%), Gaps = 6/213 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + ++N LF  L +T  +     + + L  +G  P    Y  LIN  C++G +     +
Sbjct: 839  PNVDTYNALFNGLIRTSDFHKAHRVLQVLLESGSVPTNKQYITLINGMCRVGNIKGAMKL 898

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               +     +   VA +++++GL    +I  A  +   +      P V T++TL++  C+
Sbjct: 899  QDEMKTLGISSHNVAMSAIVRGLANSKKIENAIWVLDLMLEMQIIPTVATFTTLMHVYCK 958

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +   AL L   M + + K  VV       Y  +I GLC  G ++ A +L+ +MK +++
Sbjct: 959  EANVAKALELRSIMEHCHVKLDVV------AYNVLISGLCANGDIEAAFKLYEEMKQRDL 1012

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
             P+   Y  LI  FC  N   E+  LL ++ D+
Sbjct: 1013 WPNTSIYIVLIDSFCAGNYQIESEKLLRDIQDR 1045



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 5/152 (3%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +C  N   +  +I    +   V  A + F  M  + +NP V T N ++         +  
Sbjct: 100 ICNSNPAVFDLLIRVCLRNRMVGDAVQTFYLMGFRGLNPSVYTCNMVLGSLVKEQKVDMF 159

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
                 M+ +G+ PDV TFN++++ LC+ GK   A  LL  M   GV P   T++TL++ 
Sbjct: 160 WSFFKGMLAKGICPDVATFNILLNALCERGKFKNAGFLLRKMEESGVYPTAVTYNTLLNW 219

Query: 368 FCLTGRVNHAKELFVSMESMG-----CKHTVF 394
           +C  GR   A +L   M S G     C + VF
Sbjct: 220 YCKKGRYKAASQLIDCMASKGIGVDVCTYNVF 251


>gi|147798989|emb|CAN61637.1| hypothetical protein VITISV_008458 [Vitis vinifera]
          Length = 708

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 7/270 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F  +   G+ PD  ++ +++   C MGRV      L  ++   F  D    T +I   
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAF 269

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C +  +      F K+   G  PNVI ++ LINGLC+ G    A  L EEM         
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGW---- 325

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNE 306
             KPN  T+TT+IDGLCK+G+ +KA  LFL++ +     P+V TY ++I+G+C  +  N 
Sbjct: 326 --KPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  LL  M +QG+ P+  T+  ++D  CK G    A  L++LM   G +PN  T++ ++D
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G ++ A  L   +   G +    +Y
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTY 473



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/299 (32%), Positives = 155/299 (51%), Gaps = 11/299 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDLYTYNILINCFCKMGR 157
           R   P   SF L+   +    +   VL   K LN+    G   D  T  ++I+ FC+ G 
Sbjct: 218 RGVSPDCVSFKLM---VVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKGY 274

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V+       +++     P+ + FT+LI GLC +  I +A  L  ++   G KPNV T++T
Sbjct: 275 VNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC+ G T  A  LF ++   +G      KPN  TYT +I+G CKE  +++A+ L  
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGY-----KPNVHTYTAMINGYCKEDKLNRAEMLLS 389

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M+++ + P+  TY +LI G C   ++  A  L+  M  +G  P++ T+N I+D LCK G
Sbjct: 390 RMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKG 449

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +DEA RLL  + + G+  +  T++ LM   C     N +   F  M  +G    + SY
Sbjct: 450 SLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSY 508



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 148/293 (50%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L K         L + +   G  P++YT+  LI+  CK G     F +
Sbjct: 292 PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 165 LGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             +++RS  + P+   +T++I G C E ++  A  L ++++  G  PN  TY+TLI+G C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+ + A  L + M    GK G    PN  TY  IIDGLCK+G +D+A  L  ++    
Sbjct: 412 KVGNFVRAYELMDLM----GKEGF--SPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  D VTY  L+   C   D N +     +M+  G  PD+ ++  ++   C+  +M E+ 
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESE 525

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           RL E  +  G+ P   T+++++ G+C  G  + A +LF  M + GC     +Y
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITY 578



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K    D    L  +++  GL  D  TY IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+  FTPD  ++T+LI   C + ++ E+  LF +  + G  P   TY+++I G CR
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+T +A+ LF+ M+N        C P+++TY  +I GLCKE  +D A+ L+  M DK +
Sbjct: 553 YGNTSLAVKLFQRMSNHG------CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV-TFNVIMDELCKNGKMDEAS 343
           +P  VT  +L + +C  +D + A    I ++D+  +   + T N ++ +LC  GK+D A+
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTA----INVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAA 662

Query: 344 RLLELMILRGVNPNTSTFSTLMD 366
                ++ +  N N  T    M+
Sbjct: 663 LFFHKLLDKEPNVNRVTLLGFMN 685



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 137/281 (48%), Gaps = 6/281 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  ++      P + ++  +     K    +    L  R+   GL P+  TY  L
Sbjct: 347 KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTL 406

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK+G     + ++  + +  F+P+   + ++I GLC +  + EA  L  K+   G 
Sbjct: 407 IDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + + +TY+ L++  CR   T  +L  F +M     K G    P+  +YTT+I   C++  
Sbjct: 467 QADGVTYTILMSVHCRQADTNRSLVFFNKML----KVGFT--PDIHSYTTLISXFCRQKQ 520

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +++ LF +     + P   TY S+I G+C   + + A  L   M + G  PD +T+  
Sbjct: 521 MKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGA 580

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++  LCK  K+D+A  L + M+ +G++P   T  TL   +C
Sbjct: 581 LISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYC 621



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 13/311 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTG 137
           QG I      +AF + + M+     P   T   L+ G L K    +    LF +L  S G
Sbjct: 307 QGSI-----KQAFELLEEMVRRGWKPNVYTHTTLIDG-LCKKGWTEKAFRLFLKLVRSDG 360

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
             P+++TY  +IN +CK  +++   ++L R+      P+   +T+LI G C     + A 
Sbjct: 361 YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAY 420

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            L   +   G  PN+ TY+ +I+GLC+ G    A  L  +++          + + VTYT
Sbjct: 421 ELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG------LQADGVTYT 474

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++   C++   +++   F +M      PD+ +Y +LI  FC      E+  L  E +  
Sbjct: 475 ILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCRQKQMKESERLFEEAVSL 534

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G+ P   T+  ++   C+ G    A +L + M   G  P++ T+  L+ G C   +++ A
Sbjct: 535 GLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDA 594

Query: 378 KELFVSMESMG 388
           + L+ +M   G
Sbjct: 595 RNLYDAMMDKG 605



 Score =  118 bits (296), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 9/277 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L     K  ++     L   +   G  P++YTYN +I+  CK G +   + +
Sbjct: 398 PNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRL 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++       D V +T L+   C ++    +   F K+   G  P++ +Y+TLI+  CR
Sbjct: 458 LNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISXFCR 517

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 +  LFEE  +     G++  P   TYT++I G C+ G    A +LF +M +   
Sbjct: 518 QKQMKESERLFEEAVS----LGLI--PTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGC 571

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +TY +LI G C  +  ++A  L   MMD+G+ P  VT   +  E CK      A  
Sbjct: 572 APDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAIN 631

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +L+ +  R       T +TL+   C  G+++ A   F
Sbjct: 632 VLDRLEKRQW---IRTVNTLVRKLCSEGKLDMAALFF 665



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 10/203 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N +   F+ ML +  +P  + S+  L     + K       LF+   S GL P   TY  
Sbjct: 487 NRSLVFFNKMLKVGFTPD-IHSYTTLISXFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  +C+ G  S    +  R+      PD++ + +LI GLC ES++ +A  L+  +   G
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  +T  TL    C+   +  A+N+ + +           +    T  T++  LC EG
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEK---------RQWIRTVNTLVRKLCSEG 656

Query: 268 FVDKAKELFLQMKDKNINPDVVT 290
            +D A   F ++ DK  N + VT
Sbjct: 657 KLDMAALFFHKLLDKEPNVNRVT 679



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 84/179 (46%), Gaps = 6/179 (3%)

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           ++      G    A+N+  EM N     G+V   +T T   ++D     G V+ A+ +F+
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQ----GLV--XSTQTLNCVLDVAVGMGLVEIAENMFV 213

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M  + ++PD V++  ++   C      EA   L  M+++G   D  T  +I+D  C+ G
Sbjct: 214 EMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERGFIVDNATCTLIIDAFCQKG 273

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++        M+  G+ PN   F+ L++G C  G +  A EL   M   G K  V+++
Sbjct: 274 YVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTH 332



 Score = 43.9 bits (102), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 49/108 (45%)

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +KN+         ++  F       EA  +++EM +QG+     T N ++D     G ++
Sbjct: 147 NKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVXSTQTLNCVLDVAVGMGLVE 206

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            A  +   M  RGV+P+  +F  ++   C  GRV  A++   +M   G
Sbjct: 207 IAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAEKWLNAMVERG 254


>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08310, mitochondrial [Vitis vinifera]
 gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
          Length = 854

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  TSF+++   L  T   D  LSLF+ +   G   ++  YN LI+      R+   +++
Sbjct: 455 PDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 514

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S F P      S+   LC    +  A  +  +++  G +P +  Y+ L+  LC+
Sbjct: 515 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 574

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A N   EM     + G +  P+ V Y+  IDG  K   VD+A E+F  +  +  
Sbjct: 575 RKRSAEACNFLAEMV----REGFL--PDIVAYSAAIDGFVKIKAVDQALEIFRDICARGY 628

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV YN+LI+GFC     +EA+ +L EM+ +G+ P VVT+N+++D  CKNG +D+A  
Sbjct: 629 CPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFH 688

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M+ +   PN  T++TL+DG C  GR + A  L+  M   GC     S+
Sbjct: 689 CLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF 740



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 136/284 (47%), Gaps = 7/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   + N +FGCL + +     L + + +   G  P +  Y +L+   CK  R +     
Sbjct: 525 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 584

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R  F PD VA+++ I G      + +A  +F  + A G  P+V+ Y+TLING C+
Sbjct: 585 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCK 644

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++ +EM       G+V  P+ VTY  +IDG CK G +D+A     +M  K  
Sbjct: 645 VKRVSEAHDILDEMVAK----GLV--PSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKER 698

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V+TY +LI G C A   ++A  L  EM  +G  P+ ++F  ++  LCK G  D A  
Sbjct: 699 EPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALL 758

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
               M  R   P+T  +  L+  F        A E+   M + G
Sbjct: 759 YFREMGERET-PDTIVYVALITSFISNKNPTLAFEILKEMVAKG 801



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 7/253 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  + LL   L K K      +    +   G  PD+  Y+  I+ F K+  V     +
Sbjct: 560 PWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEI 619

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I    + PD VA+ +LI G C   R+ EA  +  ++ A G  P+V+TY+ LI+G C+
Sbjct: 620 FRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCK 679

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +    M       G   +PN +TYTT+IDGLC  G  D A  L+ +M+ K  
Sbjct: 680 NGDIDQAFHCLSRMV------GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGC 733

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+ +++ +LIHG C    W +A  L    M +   PD + +  ++     N     A  
Sbjct: 734 SPNRISFIALIHGLCKCG-WPDAALLYFREMGERETPDTIVYVALITSFISNKNPTLAFE 792

Query: 345 LLELMILRGVNPN 357
           +L+ M+ +G  P+
Sbjct: 793 ILKEMVAKGKFPD 805



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L+ +   +    L K +  +G  P  +T+N +  C C+   V+    ++  + 
Sbjct: 495 YNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMR 554

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P    +T L+K LC   R  EA     ++   G  P+++ YS  I+G  +     
Sbjct: 555 VHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVD 614

Query: 230 VALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            AL +F ++ A G       C P+ V Y T+I+G CK   V +A ++  +M  K + P V
Sbjct: 615 QALEIFRDICARG------YC-PDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSV 667

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN LI G+C   D ++A   L  M+ +  +P+V+T+  ++D LC  G+ D+A  L   
Sbjct: 668 VTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNE 727

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           M  +G +PN  +F  L+ G C  G  + A   F  M
Sbjct: 728 MRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREM 763



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++       K K  D  L +F+ + + G  PD+  YN LIN FCK+ RVS    +
Sbjct: 595 PDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDI 654

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P  V +  LI G C    I +A    +++     +PNVITY+TLI+GLC 
Sbjct: 655 LDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCN 714

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A++L+ EM  G G     C PN +++  +I GLCK G+ D A   F +M ++  
Sbjct: 715 AGRPDDAIHLWNEM-RGKG-----CSPNRISFIALIHGLCKCGWPDAALLYFREMGERE- 767

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            PD + Y +LI  F    +   A  +L EM+ +G  PD +  N
Sbjct: 768 TPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKN 810



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 164/424 (38%), Gaps = 99/424 (23%)

Query: 66  LEQFLKERCKSSGQGDITAITPN-EAFCIFDYMLNMRPSPPPLTSFNLLFG--------- 115
           +E  LKE C S  + D   +T   +A+C      N R     L+ FN ++G         
Sbjct: 218 VEMRLKEMCDSGWEPDKYTLTSVLQAYC------NSRKFDKALSVFNEIYGRGWVDGHVL 271

Query: 116 -----CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
                  +K    D    L +R+   G+  +  T+ +LI+ F +  RV     +  ++ +
Sbjct: 272 SILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQK 331

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV------------------ 212
           S F PD   + +LI GLCA+  I +A  L +++K  G  P++                  
Sbjct: 332 SGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIAYCSEEVDIYR 391

Query: 213 ---------------ITYSTLINGLCRTGHTIVALNLFEEMANGN-------GKFGVV-- 248
                          + Y++++NGL        A  L   M   N        KF +V  
Sbjct: 392 LIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKE 451

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             +P+T +++ +IDGLC  G +D A  LF  M       +V+ YN+LI     +N   E 
Sbjct: 452 MVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEEC 511

Query: 308 NCLLIEMMDQGVQPDVVTFN-----------------------------------VIMDE 332
             LL EM   G +P   T N                                   +++ +
Sbjct: 512 YLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQ 571

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK  +  EA   L  M+  G  P+   +S  +DGF     V+ A E+F  + + G    
Sbjct: 572 LCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPD 631

Query: 393 VFSY 396
           V +Y
Sbjct: 632 VVAY 635



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/326 (27%), Positives = 146/326 (44%), Gaps = 29/326 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +FD +  MR   P   SFN L   ++K+   D V    K +  +G  PD YT   +
Sbjct: 181 EANLLFDQVKMMRLCVPNSYSFNCLLEAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSV 240

Query: 149 INCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +  +C   +      V   I  R       ++   L    C E  + +A  L  +++  G
Sbjct: 241 LQAYCNSRKFDKALSVFNEIYGRGWVDGHVLSILVLTFSKCGE--VDKAFELIERMEDLG 298

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N  T+  LI+G  R      AL LF++M     K G    P+   Y  +I GLC + 
Sbjct: 299 IRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQ----KSGFA--PDVSVYDALIGGLCAKK 352

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTF 326
            ++KA  L  +MK+  I+PD+   + LI    Y ++  +   L+ E + D   +  ++ +
Sbjct: 353 EIEKALHLLSEMKELGIDPDIQILSKLI---AYCSEEVDIYRLIEERLEDLDTEAMLLLY 409

Query: 327 NVIMDELCKNGKMDEASRLLE----------------LMILRGVNPNTSTFSTLMDGFCL 370
           N +++ L     +D+A  LL                  M+   V P+T++FS ++DG C 
Sbjct: 410 NSVLNGLVNGKSVDKAYYLLRAMTGDNYTDNFEVNKFFMVKEMVRPDTTSFSIVIDGLCN 469

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
           TG+++ A  LF  M  +GCK  V  Y
Sbjct: 470 TGKLDLALSLFRDMVRVGCKQNVLLY 495



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K K       +   + + GL P + TYN+LI+ +CK G +   F  
Sbjct: 630 PDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHC 689

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R++     P+ + +T+LI GLC   R  +A  L+ +++  GC PN I++  LI+GLC+
Sbjct: 690 LSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCK 749

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL  F EM            P+T+ Y  +I           A E+  +M  K  
Sbjct: 750 CGWPDAALLYFREMGERE-------TPDTIVYVALITSFISNKNPTLAFEILKEMVAKGK 802

Query: 285 NPDVVTYNSL 294
            PD +  N L
Sbjct: 803 FPDPLDKNDL 812


>gi|410109935|gb|AFV61047.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           origanoides]
          Length = 431

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 94/280 (33%), Positives = 150/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+  +L+ G      + E   L + + A G +P+V TYS LINGLC+      A   F+
Sbjct: 177 VVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD AKE++ QM  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ +M  +G++PD +T+  ++B  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLKQAHDLIDDMSMKGLKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+  K    +Y
Sbjct: 351 DDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTY 390



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/263 (33%), Positives = 142/263 (53%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++      
Sbjct: 175 PSVVSXNTLMNGYIRLGDLDEGFRLKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEX 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAKEIYKQMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L ++M+          KP+ +TYTT+IBG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLKQAHDLIDDMSMKG------LKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+   ++PD  T+ +I++E CK G + + S+
Sbjct: 349 RLDDVVYTALISGLCQEGRSVDAEKMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRDGHAPSVVTYNVLMNG 431



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 153/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + + N L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSXNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A   F ++   G  PN +T++TLI+G C
Sbjct: 199 LKSVMLASGVQPDVYTYSVLINGLCKESKMDDANEXFDEMLVKGLVPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A  ++++M + +        P+ +TY T+I GLCK+G + +A +L   M  K 
Sbjct: 259 KNGRVDLAKEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKITYTTLIBGCCKEGDLDSAFEHRKRMIQENIRLDDVVYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+   + P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVRLKPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHAPSVVTY 425


>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 874

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 151/285 (52%), Gaps = 2/285 (0%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FNLL   L  +   D    LF  +   G  P+ +T+ IL+  +CK G    G  +
Sbjct: 145 PETYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ V + +++   C E R  ++  L  K++  G  P+++T+++ I+ LC+
Sbjct: 205 LNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCK 264

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  +F +M     ++  + +PN++TY  ++ G CK G ++ AK LF  +++ + 
Sbjct: 265 EGKVLDASRIFSDMELD--EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              + +YN  + G      + EA  +L +M+D+G+ P + ++N++MD LCK G + +A  
Sbjct: 323 LVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKT 382

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LM   GV+P+  T+  L+ G+C  G+V+ AK L   M    C
Sbjct: 383 IVGLMKRNGVSPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNC 427



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 97/329 (29%), Positives = 152/329 (46%), Gaps = 34/329 (10%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M      P   T F +L     K    D  L L   + S G+ P+   YN +++ F
Sbjct: 169 LFDEMPEKGCKPNEFT-FGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSF 227

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA---FGC- 208
           C+ GR      ++ ++      PD V F S I  LC E ++++A+ +F+ ++     G  
Sbjct: 228 CREGRNDDSEKLVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLP 287

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKF---GV 247
           +PN ITY+ ++ G C+ G    A  LFE +   +                  GKF     
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLVSLQSYNIWLQGLVRHGKFIEAET 347

Query: 248 VCK--------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           V K        P+  +Y  ++DGLCK G +  AK +   MK   ++PD VTY  L+HG+C
Sbjct: 348 VLKQMIDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVSPDAVTYGCLLHGYC 407

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                + A  LL EMM     P+  T N+++  L   G++ EA  LL  M  +G   +T 
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAEELLRKMNEKGYGLDTV 467

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           T + ++DG C +G ++ A E+   M   G
Sbjct: 468 TCNIIVDGLCGSGELDKAIEIVKGMRVHG 496



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 153/317 (48%), Gaps = 31/317 (9%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           SP  +T   LL G  +  K  D   SL + +      P+ YT NIL++    MGR+S   
Sbjct: 393 SPDAVTYGCLLHGYCSVGK-VDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISEAE 451

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--------------- 207
            +L ++    +  D V    ++ GLC    + +A  +   ++  G               
Sbjct: 452 ELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLV 511

Query: 208 --------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
                   C P++ITYSTL+NGLC+ G    A  LF EM       G   +P+++ Y   
Sbjct: 512 DDSLIENNCLPDLITYSTLLNGLCKAGRFAEAKTLFAEM------MGEKLQPDSLAYNIF 565

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I   CK+G +  A  +   M+ K  +  + TYNSLI G    N   E + L+ EM ++G+
Sbjct: 566 IHHFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKGI 625

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P++ T+N  +  LC+ GK+++A+ LL+ M+ + + PN  +F  L+  FC     + A+E
Sbjct: 626 SPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQE 685

Query: 380 LFVSMESM-GCKHTVFS 395
           +F +  S+ G K  ++S
Sbjct: 686 VFETAVSICGQKEGLYS 702



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 121/287 (42%), Gaps = 43/287 (14%)

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PDL TY+ L+N  CK GR +    +   ++     PD++A+   I   C + +I  A  
Sbjct: 521 LPDLITYSTLLNGLCKAGRFAEAKTLFAEMMGEKLQPDSLAYNIFIHHFCKQGKISSAFR 580

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +   ++  GC  ++ TY++LI GL           L +EM            PN  TY T
Sbjct: 581 VLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMREKG------ISPNICTYNT 634

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN------------- 305
            I  LC+ G V+ A  L  +M  KNI P+V ++  LI  FC   D++             
Sbjct: 635 AIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIGAFCKVPDFDMAQEVFETAVSIC 694

Query: 306 ---------------------EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
                                +A  LL  ++D+G +     +  ++  LCK  +++ AS 
Sbjct: 695 GQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVVSLCKKDELEVASG 754

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTG---RVNHAKELFVSMESMG 388
           +L  MI +G   + +    ++DG    G     N+  E  + M S+G
Sbjct: 755 ILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNFAEKMMEMASVG 801



 Score = 68.6 bits (166), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/139 (29%), Positives = 69/139 (49%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KP    Y  +++   +E  V+    L+  M    I+P+  T+N LI   C ++  + A  
Sbjct: 109 KPGIYLYNVLLESCIRERRVEFVSWLYKDMVLCGISPETYTFNLLIRALCDSSCVDAARE 168

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  EM ++G +P+  TF +++   CK G  D+   LL  M   GV PN   ++T++  FC
Sbjct: 169 LFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNSMESFGVLPNKVVYNTIVSSFC 228

Query: 370 LTGRVNHAKELFVSMESMG 388
             GR + +++L   M   G
Sbjct: 229 REGRNDDSEKLVEKMREEG 247


>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 95/292 (32%), Positives = 150/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  TSF+++   L  T   D  LSLF+ +   G   ++  YN LI+      R+   +++
Sbjct: 415 PXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEECYLL 474

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S F P      S+   LC    +  A  +  +++  G +P +  Y+ L+  LC+
Sbjct: 475 LKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCK 534

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A N   EM     + G +  P+ V Y+  IDG  K   VD+A E+F  +  +  
Sbjct: 535 RKRSAEACNFLAEMV----REGFL--PDIVAYSAAIDGFVKIKAVDQALEIFRDICARGY 588

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVV YN+LI+GFC     +EA+ +L EM+ +G+ P VVT+N+++D  CKNG +D+A  
Sbjct: 589 CPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFH 648

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M+ +   PN  T++TL+DG C  GR + A  L+  M   GC     S+
Sbjct: 649 CLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISF 700



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 136/284 (47%), Gaps = 7/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   + N +FGCL + +     L + + +   G  P +  Y +L+   CK  R +     
Sbjct: 485 PTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQLCKRKRSAEACNF 544

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++R  F PD VA+++ I G      + +A  +F  + A G  P+V+ Y+TLING C+
Sbjct: 545 LAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCK 604

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A ++ +EM       G+V  P+ VTY  +IDG CK G +D+A     +M  K  
Sbjct: 605 VKRVSEAHDILDEMVAK----GLV--PSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKER 658

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V+TY +LI G C A   ++A  L  EM  +G  P+ ++F  ++  LCK G  D A  
Sbjct: 659 EPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALL 718

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
               M  R   P+T  +  L+  F        A E+   M + G
Sbjct: 719 YFREMGERET-PDTIVYVALITSFISNKNPTLAFEILKEMVAKG 761



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 120/253 (47%), Gaps = 7/253 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  + LL   L K K      +    +   G  PD+  Y+  I+ F K+  V     +
Sbjct: 520 PWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEI 579

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I    + PD VA+ +LI G C   R+ EA  +  ++ A G  P+V+TY+ LI+G C+
Sbjct: 580 FRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCK 639

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +    M       G   +PN +TYTT+IDGLC  G  D A  L+ +M+ K  
Sbjct: 640 NGDIDQAFHCLSRMV------GKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGC 693

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+ +++ +LIHG C    W +A  L    M +   PD + +  ++     N     A  
Sbjct: 694 SPNRISFIALIHGLCKCG-WPDAALLYFREMGERETPDTIVYVALITSFISNKNPTLAFE 752

Query: 345 LLELMILRGVNPN 357
           +L+ M+ +G  P+
Sbjct: 753 ILKEMVAKGKFPD 765



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 8/276 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L+ +   +    L K +  +G  P  +T+N +  C C+   V+    ++  + 
Sbjct: 455 YNNLIDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMR 514

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P    +T L+K LC   R  EA     ++   G  P+++ YS  I+G  +     
Sbjct: 515 VHGHEPWIKHYTLLVKQLCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVD 574

Query: 230 VALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            AL +F ++ A G       C P+ V Y T+I+G CK   V +A ++  +M  K + P V
Sbjct: 575 QALEIFRDICARG------YC-PDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSV 627

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN LI G+C   D ++A   L  M+ +  +P+V+T+  ++D LC  G+ D+A  L   
Sbjct: 628 VTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNE 687

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           M  +G +PN  +F  L+ G C  G  + A   F  M
Sbjct: 688 MRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREM 723



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 7/223 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++       K K  D  L +F+ + + G  PD+  YN LIN FCK+ RVS    +
Sbjct: 555 PDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDI 614

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++     P  V +  LI G C    I +A    +++     +PNVITY+TLI+GLC 
Sbjct: 615 LDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHCLSRMVGKEREPNVITYTTLIDGLCN 674

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A++L+ EM  G G     C PN +++  +I GLCK G+ D A   F +M ++  
Sbjct: 675 AGRPDDAIHLWNEM-RGKG-----CSPNRISFIALIHGLCKCGWPDAALLYFREMGERE- 727

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            PD + Y +LI  F    +   A  +L EM+ +G  PD +  N
Sbjct: 728 TPDTIVYVALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKN 770



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 102/424 (24%), Positives = 163/424 (38%), Gaps = 99/424 (23%)

Query: 66  LEQFLKERCKSSGQGDITAITPN-EAFCIFDYMLNMRPSPPPLTSFNLLFG--------- 115
           +E  LKE C S  + D   +T   +A+C      N R     L+ FN ++G         
Sbjct: 178 VEMRLKEMCDSGWEPDKYTLTSVLQAYC------NSRKFDKALSVFNEIYGRGWVDGHVL 231

Query: 116 -----CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
                  +K    D    L +R+   G+  +  T+ +LI+ F +  RV     +  ++ +
Sbjct: 232 SILVLTFSKCGEVDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKALQLFKKMQK 291

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV------------------ 212
           S F PD   + +LI GLCA+  I +A  L +++K  G  P++                  
Sbjct: 292 SGFAPDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILSKLIPYCSEEVDIYR 351

Query: 213 ---------------ITYSTLINGLCRTGHTIVALNLFEEMANGN-------GKFGVV-- 248
                          + Y++++NGL        A  L   M   N        KF +V  
Sbjct: 352 LIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTGDNYTDNFEVNKFFMVKE 411

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
             +P T +++ +IDGLC  G +D A  LF  M       +V+ YN+LI     +N   E 
Sbjct: 412 MVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLLYNNLIDKLSNSNRLEEC 471

Query: 308 NCLLIEMMDQGVQPDVVTFN-----------------------------------VIMDE 332
             LL EM   G +P   T N                                   +++ +
Sbjct: 472 YLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGHEPWIKHYTLLVKQ 531

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK  +  EA   L  M+  G  P+   +S  +DGF     V+ A E+F  + + G    
Sbjct: 532 LCKRKRSAEACNFLAEMVREGFLPDIVAYSAAIDGFVKIKAVDQALEIFRDICARGYCPD 591

Query: 393 VFSY 396
           V +Y
Sbjct: 592 VVAY 595



 Score =  101 bits (252), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 79/301 (26%), Positives = 133/301 (44%), Gaps = 29/301 (9%)

Query: 114 FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSC 172
            G ++K+   D V    K +  +G  PD YT   ++  +C   +      V   I  R  
Sbjct: 166 LGAISKSGSIDLVEMRLKEMCDSGWEPDKYTLTSVLQAYCNSRKFDKALSVFNEIYGRGW 225

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                ++   L    C E  + +A  L  +++  G + N  T+  LI+G  R      AL
Sbjct: 226 VDGHVLSILVLTFSKCGE--VDKAFELIERMEDLGIRLNEKTFCVLIHGFVRQSRVDKAL 283

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            LF++M     K G    P+   Y  +I GLC +  ++KA  L  +MK+  I+PD+   +
Sbjct: 284 QLFKKMQ----KSGFA--PDVSVYDALIGGLCAKKEIEKALHLLSEMKELGIDPDIQILS 337

Query: 293 SLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLE---- 347
            LI    Y ++  +   L+ E + D   +  ++ +N +++ L     +D+A  LL     
Sbjct: 338 KLIP---YCSEEVDIYRLIEERLEDLDTEAMLLLYNSVLNGLVNGKSVDKAYYLLXAMTG 394

Query: 348 ------------LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
                        M+   V P T++FS ++DG C TG+++ A  LF  M  +GCK  V  
Sbjct: 395 DNYTDNFEVNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGCKQNVLL 454

Query: 396 Y 396
           Y
Sbjct: 455 Y 455



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 7/190 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K K       +   + + GL P + TYN+LI+ +CK G +   F  
Sbjct: 590 PDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLLIDGWCKNGDIDQAFHC 649

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R++     P+ + +T+LI GLC   R  +A  L+ +++  GC PN I++  LI+GLC+
Sbjct: 650 LSRMVGKEREPNVITYTTLIDGLCNAGRPDDAIHLWNEMRGKGCSPNRISFIALIHGLCK 709

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL  F EM            P+T+ Y  +I           A E+  +M  K  
Sbjct: 710 CGWPDAALLYFREMGERE-------TPDTIVYVALITSFISNKNPTLAFEILKEMVAKGK 762

Query: 285 NPDVVTYNSL 294
            PD +  N L
Sbjct: 763 FPDPLDKNDL 772


>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
 gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
 gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
 gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
          Length = 535

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/286 (30%), Positives = 145/286 (50%), Gaps = 7/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L S N+L   L      D  L +   +   G+ PD+ TY  +++ +C  G +     +
Sbjct: 191 PNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKL 250

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+ S   PD   +T LI G C    + +AA +  +++A   +PN +TYS +I   C+
Sbjct: 251 FDDIIASGRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCK 310

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               I A +   EM       G    P+T     ++D LC++G  ++A +L+  M+ KN+
Sbjct: 311 EEKPIEARDFMREM------LGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNV 364

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +  ++LI+  C      EA  L  E +++G +P ++T+N ++  LC+N ++ EA R
Sbjct: 365 PPDNMVTSTLIYWLCKNGMVREARNLFDE-LERGFKPSLLTYNSLISGLCENEELQEAGR 423

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           + + M+ RG  PN  T+  L+ G C TG+ N    +F  M S GCK
Sbjct: 424 VWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMVSRGCK 469



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 68/225 (30%), Positives = 113/225 (50%), Gaps = 9/225 (4%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
            TP+ V+   L+KGL     +  A  +  ++   G  P+V+TY+T+++  C  G    A 
Sbjct: 189 ITPNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQ 248

Query: 233 NLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
            LF+++ A+G        +P+   YT +IDG C+ G +  A  +  +M+   + P+ VTY
Sbjct: 249 KLFDDIIASGR-------RPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTY 301

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           + +I   C      EA   + EM+  G  PD      ++D LC++GK +EA +L   M  
Sbjct: 302 SVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEK 361

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + V P+    STL+   C  G V  A+ LF  +E  G K ++ +Y
Sbjct: 362 KNVPPDNMVTSTLIYWLCKNGMVREARNLFDELER-GFKPSLLTY 405



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 129/278 (46%), Gaps = 17/278 (6%)

Query: 78  GQGDITAITPNEAFCIFDYML--NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           G+GDI       A  +FD ++    RP    +T + +L     +  +      +   + +
Sbjct: 240 GKGDIEG-----AQKLFDDIIASGRRPD---VTMYTVLIDGYCQCGNLQDAARIMDEMEA 291

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
             + P+  TY+++I   CK  +       +  +L + + PD      ++  LC + +  E
Sbjct: 292 ARVQPNEVTYSVVIEACCKEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGKSEE 351

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  L+  ++     P+ +  STLI  LC+ G    A NLF+E+  G        KP+ +T
Sbjct: 352 AYQLWRWMEKKNVPPDNMVTSTLIYWLCKNGMVREARNLFDELERG-------FKPSLLT 404

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y ++I GLC+   + +A  ++  M ++   P+ +TY +LI G C     NE   +  EM+
Sbjct: 405 YNSLISGLCENEELQEAGRVWDDMVERGYEPNAMTYEALIKGLCKTGKPNEGATVFEEMV 464

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
            +G +P  + F V++D L +    D   ++LE   L G
Sbjct: 465 SRGCKPSSLLFQVLVDSLSEPRHEDTIRKILETAALYG 502


>gi|255555533|ref|XP_002518803.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223542184|gb|EEF43728.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 775

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/273 (35%), Positives = 140/273 (51%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S N     LAKT   D     F+ +   G+   ++TYNI+I   CK G +     +
Sbjct: 215 PKARSCNAFLYRLAKTGKGDLSNKFFRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSL 274

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++ +   TPD V + SLI G      + E+  LF ++K  GC+P+VITY+ LIN  C+
Sbjct: 275 FHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCK 334

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A +   EM N         KPN VTY+T+ID LCKE  + +A +  L M+   +
Sbjct: 335 YEQMPKAFHFLHEMKNSG------LKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGL 388

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+  TY SLI   C A   ++A  L  EM+   V  +VVT+  ++D LCK G+M EA  
Sbjct: 389 SPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQVGFNVVTYTTLLDGLCKEGRMMEAED 448

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           L   MI  GV PN  T++ L+ G     RV +A
Sbjct: 449 LFRAMIKAGVTPNLKTYTALVHGHIKNKRVENA 481



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/315 (31%), Positives = 143/315 (45%), Gaps = 41/315 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     K    D    LF+ +   G  PD+ TYN LINCFCK  ++   F  
Sbjct: 285 PDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHF 344

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S   P+ V +++LI  LC E  + +A      ++  G  PN  TY++LI+  C+
Sbjct: 345 LHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCK 404

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL L +EM      F      N VTYTT++DGLCKEG + +A++LF  M    +
Sbjct: 405 AGYLSDALKLADEMLQVQVGF------NVVTYTTLLDGLCKEGRMMEAEDLFRAMIKAGV 458

Query: 285 NPDVVTYNSLIH-----------------------------------GFCYANDWNEANC 309
            P++ TY +L+H                                   G C  N   E   
Sbjct: 459 TPNLKTYTALVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEF 518

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++ EM   G++ + V + + MD   K GK  EA  LL+ M   GV     TF  L+DG C
Sbjct: 519 VMSEMKACGIRANSVIYTIRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLC 578

Query: 370 LTGRVNHAKELFVSM 384
             G V  A + F  M
Sbjct: 579 KKGLVEEAIDYFARM 593



 Score =  124 bits (311), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/257 (29%), Positives = 132/257 (51%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P    ++ L + F ++G +        R+ R    P A +  + +  L    +   +   
Sbjct: 180 PGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARSCNAFLYRLAKTGKGDLSNKF 239

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F  +   G   +V TY+ +I  +C+ G  + A +LF +M     + G+   P+ VTY ++
Sbjct: 240 FRDMVGAGIAQSVFTYNIMIGYMCKEGDMVTAKSLFHQMK----QMGLT--PDIVTYNSL 293

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           IDG  K G +D++  LF +MKD    PDV+TYN+LI+ FC      +A   L EM + G+
Sbjct: 294 IDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFCKYEQMPKAFHFLHEMKNSGL 353

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P+VVT++ ++D LCK   + +A + L  M   G++PN  T+++L+D  C  G ++ A +
Sbjct: 354 KPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALK 413

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M  +     V +Y
Sbjct: 414 LADEMLQVQVGFNVVTY 430



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 149/302 (49%), Gaps = 8/302 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D ML ++     +T   LL G L K         LF+ +   G+ P+L TY  
Sbjct: 409 SDALKLADEMLQVQVGFNVVTYTTLLDG-LCKEGRMMEAEDLFRAMIKAGVTPNLKTYTA 467

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++   K  RV +   +L  I      PD + + ++I GLC+++++ E   + +++KA G
Sbjct: 468 LVHGHIKNKRVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACG 527

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N + Y+  ++   +TG T+ ALNL +EM +     GV  +   VT+  +IDGLCK+G
Sbjct: 528 IRANSVIYTIRMDAYFKTGKTVEALNLLQEMCD----LGV--EVTIVTFCVLIDGLCKKG 581

Query: 268 FVDKAKELFLQMKDKNINPD-VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            V++A + F +M D N+ P+ V    +LI G C  N    A  L  EM D+ + PD + +
Sbjct: 582 LVEEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAY 641

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D   K+    EA  +   M   G+  +   +++L+ G      V  A+     M  
Sbjct: 642 TALIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIG 701

Query: 387 MG 388
            G
Sbjct: 702 KG 703



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/242 (30%), Positives = 115/242 (47%), Gaps = 8/242 (3%)

Query: 157 RVSHGFVVLGRIL--RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           R+  GF V   +   R+   P    F +L         + EA   F+++  F   P   +
Sbjct: 160 RILPGFDVFEVLWSTRNVCVPGFGVFDALFSVFIELGMLEEAGQCFSRMTRFRVFPKARS 219

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
            +  +  L +TG   ++   F +M       G     +  TY  +I  +CKEG +  AK 
Sbjct: 220 CNAFLYRLAKTGKGDLSNKFFRDMV------GAGIAQSVFTYNIMIGYMCKEGDMVTAKS 273

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF QMK   + PD+VTYNSLI G+      +E+ CL  EM D G +PDV+T+N +++  C
Sbjct: 274 LFHQMKQMGLTPDIVTYNSLIDGYGKLGLLDESFCLFEEMKDVGCEPDVITYNALINCFC 333

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K  +M +A   L  M   G+ PN  T+STL+D  C    +  A +  + M  +G     F
Sbjct: 334 KYEQMPKAFHFLHEMKNSGLKPNVVTYSTLIDALCKEHMLQQAIKFLLDMRRVGLSPNEF 393

Query: 395 SY 396
           +Y
Sbjct: 394 TY 395



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/380 (25%), Positives = 159/380 (41%), Gaps = 78/380 (20%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E+FC+F+ M ++   P  +T +N L  C  K +           + ++GL P++ TY+ 
Sbjct: 304 DESFCLFEEMKDVGCEPDVIT-YNALINCFCKYEQMPKAFHFLHEMKNSGLKPNVVTYST 362

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK   +      L  + R   +P+   +TSLI   C    + +A  L  ++    
Sbjct: 363 LIDALCKEHMLQQAIKFLLDMRRVGLSPNEFTYTSLIDANCKAGYLSDALKLADEMLQVQ 422

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              NV+TY+TL++GLC+ G  + A +LF  M     K GV   PN  TYT ++ G  K  
Sbjct: 423 VGFNVVTYTTLLDGLCKEGRMMEAEDLFRAMI----KAGVT--PNLKTYTALVHGHIKNK 476

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE--------------ANC---- 309
            V+ A EL  ++K+K I PD++ Y ++I G C  N   E              AN     
Sbjct: 477 RVENALELLKEIKEKKIKPDLLLYGTIIWGLCSQNKLEECEFVMSEMKACGIRANSVIYT 536

Query: 310 -----------------LLIEMMDQGVQPDVVTFNVIMDE-------------------- 332
                            LL EM D GV+  +VTF V++D                     
Sbjct: 537 IRMDAYFKTGKTVEALNLLQEMCDLGVEVTIVTFCVLIDGLCKKGLVEEAIDYFARMADF 596

Query: 333 ----------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
                           LCKN  ++ A +L + M  + + P+   ++ L+DG         
Sbjct: 597 NLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTALIDGNLKHKDFQE 656

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  +   M  +G +  + +Y
Sbjct: 657 ALNIRSRMSELGMELDLHAY 676



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 33/151 (21%), Positives = 54/151 (35%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA   F  M +    P  +     L   L K  + +    LF  +    + PD   Y  
Sbjct: 584 EEAIDYFARMADFNLQPNNVAVCTALIDGLCKNNYIEAAKKLFDEMQDKNMVPDKIAYTA 643

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K         +  R+       D  A+TSL+ GL   + + +A     ++   G
Sbjct: 644 LIDGNLKHKDFQEALNIRSRMSELGMELDLHAYTSLVWGLSQGNLVQQARMFLNEMIGKG 703

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
             P+ I    L+      G    A+ L +E+
Sbjct: 704 IVPDEILCIRLLRKYYELGSIDEAIELHDEL 734


>gi|359472741|ref|XP_003631192.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g19890-like [Vitis vinifera]
          Length = 708

 Score =  163 bits (413), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 138/270 (51%), Gaps = 7/270 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F  +   G+ PD  ++ +++   C MGRV      L  ++   F  D    T +I   
Sbjct: 210 NMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAF 269

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C +  +      F K+   G  PNVI ++ LINGLC+ G    A  L EEM         
Sbjct: 270 CQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGW---- 325

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNE 306
             KPN  T+TT+IDGLCK+G+ +KA  LFL++ +     P+V TY ++I+G+C  +  N 
Sbjct: 326 --KPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNR 383

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  LL  M +QG+ P+  T+  ++D  CK G    A  L++LM   G +PN  T++ ++D
Sbjct: 384 AEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIID 443

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G ++ A  L   +   G +    +Y
Sbjct: 444 GLCKKGSLDEAYRLLNKVSVHGLQADGVTY 473



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/299 (32%), Positives = 155/299 (51%), Gaps = 11/299 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST---GLFPDLYTYNILINCFCKMGR 157
           R   P   SF L+   +    +   VL   + LN+    G   D  T  ++I+ FC+ G 
Sbjct: 218 RGVSPDCVSFKLM---VVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKGY 274

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V+       +++     P+ + FT+LI GLC +  I +A  L  ++   G KPNV T++T
Sbjct: 275 VNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTT 334

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+GLC+ G T  A  LF ++   +G      KPN  TYT +I+G CKE  +++A+ L  
Sbjct: 335 LIDGLCKKGWTEKAFRLFLKLVRSDGY-----KPNVHTYTAMINGYCKEDKLNRAEMLLS 389

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M+++ + P+  TY +LI G C   ++  A  L+  M  +G  P++ T+N I+D LCK G
Sbjct: 390 RMQEQGLVPNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKG 449

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +DEA RLL  + + G+  +  T++ LM   C     N +   F  M  +G    + SY
Sbjct: 450 SLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSY 508



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 148/293 (50%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F  L   L K         L + +   G  P++YT+  LI+  CK G     F +
Sbjct: 292 PNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHTTLIDGLCKKGWTEKAFRL 351

Query: 165 LGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
             +++RS  + P+   +T++I G C E ++  A  L ++++  G  PN  TY+TLI+G C
Sbjct: 352 FLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHC 411

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+ + A  L + M    GK G    PN  TY  IIDGLCK+G +D+A  L  ++    
Sbjct: 412 KVGNFVRAYELMDLM----GKEGF--SPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG 465

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  D VTY  L+   C   D N +     +M+  G  PD+ ++  ++   C+  +M E+ 
Sbjct: 466 LQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESE 525

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           RL E  +  G+ P   T+++++ G+C  G  + A +LF  M + GC     +Y
Sbjct: 526 RLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITY 578



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/286 (31%), Positives = 149/286 (52%), Gaps = 7/286 (2%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           L+     +  + + V+  F ++   GL P++  +  LIN  CK G +   F +L  ++R 
Sbjct: 264 LIIDAFCQKGYVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRR 323

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIV 230
            + P+    T+LI GLC +    +A  LF KL ++ G KPNV TY+ +ING C+      
Sbjct: 324 GWKPNVYTHTTLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTYTAMINGYCKED---- 379

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
            LN  E + +   + G+V  PNT TYTT+IDG CK G   +A EL   M  +  +P++ T
Sbjct: 380 KLNRAEMLLSRMQEQGLV--PNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYT 437

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN++I G C     +EA  LL ++   G+Q D VT+ ++M   C+    + +      M+
Sbjct: 438 YNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKML 497

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G  P+  +++TL+  FC   ++  ++ LF    S+G   T  +Y
Sbjct: 498 KVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTY 543



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 138/263 (52%), Gaps = 11/263 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K    D    L  +++  GL  D  TY IL++  C+    +   V 
Sbjct: 433 PNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVF 492

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++L+  FTPD  ++T+LI   C + ++ E+  LF +  + G  P   TY+++I G CR
Sbjct: 493 FNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTSMICGYCR 552

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+T +A+ LF+ M+N        C P+++TY  +I GLCKE  +D A+ L+  M DK +
Sbjct: 553 YGNTSLAVKLFQRMSNHG------CAPDSITYGALISGLCKESKLDDARNLYDAMMDKGL 606

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV-TFNVIMDELCKNGKMDEAS 343
           +P  VT  +L + +C  +D + A    I ++D+  +   + T N ++ +LC  GK+D A+
Sbjct: 607 SPCEVTRLTLAYEYCKKDDSSTA----INVLDRLEKRQWIRTVNTLVRKLCSEGKLDMAA 662

Query: 344 RLLELMILRGVNPNTSTFSTLMD 366
                ++ +  N N  T    M+
Sbjct: 663 LFFHKLLDKEPNVNRVTLLGFMN 685



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 75/281 (26%), Positives = 137/281 (48%), Gaps = 6/281 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +F  ++      P + ++  +     K    +    L  R+   GL P+  TY  L
Sbjct: 347 KAFRLFLKLVRSDGYKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTL 406

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK+G     + ++  + +  F+P+   + ++I GLC +  + EA  L  K+   G 
Sbjct: 407 IDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHGL 466

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + + +TY+ L++  CR   T  +L  F +M     K G    P+  +YTT+I   C++  
Sbjct: 467 QADGVTYTILMSVHCRQADTNRSLVFFNKML----KVGFT--PDIHSYTTLISTFCRQKQ 520

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +++ LF +     + P   TY S+I G+C   + + A  L   M + G  PD +T+  
Sbjct: 521 MKESERLFEEAVSLGLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGA 580

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++  LCK  K+D+A  L + M+ +G++P   T  TL   +C
Sbjct: 581 LISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYC 621



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 81/311 (26%), Positives = 144/311 (46%), Gaps = 13/311 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTG 137
           QG I      +AF + + M+     P   T   L+ G L K    +    LF +L  S G
Sbjct: 307 QGSI-----KQAFELLEEMVRRGWKPNVYTHTTLIDG-LCKKGWTEKAFRLFLKLVRSDG 360

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
             P+++TY  +IN +CK  +++   ++L R+      P+   +T+LI G C     + A 
Sbjct: 361 YKPNVHTYTAMINGYCKEDKLNRAEMLLSRMQEQGLVPNTNTYTTLIDGHCKVGNFVRAY 420

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            L   +   G  PN+ TY+ +I+GLC+ G    A  L  +++          + + VTYT
Sbjct: 421 ELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRLLNKVSVHG------LQADGVTYT 474

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++   C++   +++   F +M      PD+ +Y +LI  FC      E+  L  E +  
Sbjct: 475 ILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCRQKQMKESERLFEEAVSL 534

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G+ P   T+  ++   C+ G    A +L + M   G  P++ T+  L+ G C   +++ A
Sbjct: 535 GLIPTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDA 594

Query: 378 KELFVSMESMG 388
           + L+ +M   G
Sbjct: 595 RNLYDAMMDKG 605



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 128/277 (46%), Gaps = 9/277 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L     K  ++     L   +   G  P++YTYN +I+  CK G +   + +
Sbjct: 398 PNTNTYTTLIDGHCKVGNFVRAYELMDLMGKEGFSPNIYTYNAIIDGLCKKGSLDEAYRL 457

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++       D V +T L+   C ++    +   F K+   G  P++ +Y+TLI+  CR
Sbjct: 458 LNKVSVHGLQADGVTYTILMSVHCRQADTNRSLVFFNKMLKVGFTPDIHSYTTLISTFCR 517

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 +  LFEE  +     G++  P   TYT++I G C+ G    A +LF +M +   
Sbjct: 518 QKQMKESERLFEEAVS----LGLI--PTKKTYTSMICGYCRYGNTSLAVKLFQRMSNHGC 571

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +TY +LI G C  +  ++A  L   MMD+G+ P  VT   +  E CK      A  
Sbjct: 572 APDSITYGALISGLCKESKLDDARNLYDAMMDKGLSPCEVTRLTLAYEYCKKDDSSTAIN 631

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +L+ +  R       T +TL+   C  G+++ A   F
Sbjct: 632 VLDRLEKRQW---IRTVNTLVRKLCSEGKLDMAALFF 665



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 7/215 (3%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           ++       ++ EA  +  +++  G  P+  T + +++     G   +A N+F EM    
Sbjct: 160 MVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVEIAENMFVEMC--- 216

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            + GV   P+ V++  ++   C  G V +A+     M ++    D  T   +I  FC   
Sbjct: 217 -QRGV--SPDCVSFKLMVVACCNMGRVLEAERWLNAMVERGFIVDNATCTLIIDAFCQKG 273

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             N       +M++ G+ P+V+ F  +++ LCK G + +A  LLE M+ RG  PN  T +
Sbjct: 274 YVNRVVGYFWKMVEMGLAPNVINFTALINGLCKQGSIKQAFELLEEMVRRGWKPNVYTHT 333

Query: 363 TLMDGFCLTGRVNHAKELFVSM-ESMGCKHTVFSY 396
           TL+DG C  G    A  LF+ +  S G K  V +Y
Sbjct: 334 TLIDGLCKKGWTEKAFRLFLKLVRSDGYKPNVHTY 368



 Score = 77.8 bits (190), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 90/203 (44%), Gaps = 10/203 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N +   F+ ML +  +P  + S+  L     + K       LF+   S GL P   TY  
Sbjct: 487 NRSLVFFNKMLKVGFTPD-IHSYTTLISTFCRQKQMKESERLFEEAVSLGLIPTKKTYTS 545

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I  +C+ G  S    +  R+      PD++ + +LI GLC ES++ +A  L+  +   G
Sbjct: 546 MICGYCRYGNTSLAVKLFQRMSNHGCAPDSITYGALISGLCKESKLDDARNLYDAMMDKG 605

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  +T  TL    C+   +  A+N+ + +           +    T  T++  LC EG
Sbjct: 606 LSPCEVTRLTLAYEYCKKDDSSTAINVLDRLEK---------RQWIRTVNTLVRKLCSEG 656

Query: 268 FVDKAKELFLQMKDKNINPDVVT 290
            +D A   F ++ DK  N + VT
Sbjct: 657 KLDMAALFFHKLLDKEPNVNRVT 679



 Score = 47.0 bits (110), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 28/108 (25%), Positives = 49/108 (45%)

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           +KN+         ++  F       EA  +++EM +QG+ P   T N ++D     G ++
Sbjct: 147 NKNLERANEVMQCMVMNFAENGKLKEAVNMVVEMQNQGLVPSTQTLNCVLDVAVGMGLVE 206

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            A  +   M  RGV+P+  +F  ++   C  GRV  A+    +M   G
Sbjct: 207 IAENMFVEMCQRGVSPDCVSFKLMVVACCNMGRVLEAERWLNAMVERG 254


>gi|410109951|gb|AFV61055.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           velutina]
          Length = 406

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 155/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P   +YN L+N + ++G +  GF 
Sbjct: 114 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSAVSYNTLMNGYIRLGVLDEGFR 173

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 174 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHC 233

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L   M  K 
Sbjct: 234 KNGRVDLAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG 287

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI G C       A      ++ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 288 LKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAE 347

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+NP+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 348 KMLREMLSVGLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 400



 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/272 (34%), Positives = 149/272 (54%), Gaps = 6/272 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 92  LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 151

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           AV++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 152 AVSYNTLMNGYIRLGVLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDADELFD 211

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 212 EMLVK----GLV--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 265

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ +M  +G++PD +T+  ++D  CK G +  A    + +I   +  
Sbjct: 266 GLCKKGDLKQAHDLIDDMSRKGLKPDKITYTTLIDGCCKEGVLVSAFEHRKRLIQENIRL 325

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   ++ L+ G C  GR   A+++   M S+G
Sbjct: 326 DDVVYTALISGLCQEGRSVDAEKMLREMLSVG 357



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/290 (33%), Positives = 153/290 (52%), Gaps = 16/290 (5%)

Query: 80  GDITAITPNEAFCIFDYM--LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           GDI       A  +FD +    +RPS     S+N L     +    D    L   + ++G
Sbjct: 131 GDIRV-----AQSVFDAITKWGLRPSA---VSYNTLMNGYIRLGVLDEGFRLKSAMLASG 182

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD+YTY++LIN  CK  ++     +   +L     P+ V FT+LI G C   R+  A 
Sbjct: 183 VQPDVYTYSVLINGLCKESKMDDADELFDEMLVKGLVPNGVTFTTLIDGHCKNGRVDLAM 242

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            ++ ++ +    P++ITY+TLI GLC+ G    A +L ++M+          KP+ +TYT
Sbjct: 243 EIYKQMLSQSLLPDLITYNTLIYGLCKKGDLKQAHDLIDDMSRKG------LKPDKITYT 296

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDG CKEG +  A E   ++  +NI  D V Y +LI G C      +A  +L EM+  
Sbjct: 297 TLIDGCCKEGVLVSAFEHRKRLIQENIRLDDVVYTALISGLCQEGRSVDAEKMLREMLSV 356

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           G+ PD  T+ +I++E CK G + + S+LL+ M   G  P+  T++ LM+G
Sbjct: 357 GLNPDTGTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 406


>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
 gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
          Length = 826

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 101/319 (31%), Positives = 158/319 (49%), Gaps = 22/319 (6%)

Query: 94  FDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           FD  + M  +  P  L ++  L   L      D  L++  ++   G+ PD   YN+L+N 
Sbjct: 400 FDLFIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNG 459

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            CK GR+S   ++L  +L    + DA    +L+ G     ++ EA  LF    A G  P 
Sbjct: 460 LCKKGRLSAAKLLLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPG 519

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+ Y+ +I G C+ G    AL   + M +G+        P+  TY+TIIDG  K+  +  
Sbjct: 520 VVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHS------PDEFTYSTIIDGYVKQNDLHN 573

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A +LF QM  +   P+VVTY SLI+GFC   D + A     EM   G++P+VVT+ +++ 
Sbjct: 574 ALKLFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTYTILIG 633

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF------CLTGRVNHAKEL----- 380
             CK GK+ +A    ELM+L    PN  TF+ L++G        ++ + N + E+     
Sbjct: 634 CFCKEGKISKACSFFELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLM 693

Query: 381 ---FVSMESMGCKHTVFSY 396
              F +M S G +  V +Y
Sbjct: 694 MDFFRTMISDGWEQRVAAY 712



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 139/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +T++N L     +         L +     GL P+  +Y  LI+ +CK G+    F +
Sbjct: 343 PDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDL 402

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +       D VA+ +L+ GL A   +  A  +  K+   G  P+   Y+ L+NGLC+
Sbjct: 403 FIGMTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCK 462

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L  EM + N         +     T++DG  + G +D+AK+LF     K +
Sbjct: 463 KGRLSAAKLLLVEMLHQNLSL------DAFVSATLVDGFIRHGKLDEAKKLFELTIAKGM 516

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P VV YN++I G+C     N+A   +  M D    PD  T++ I+D   K   +  A +
Sbjct: 517 DPGVVGYNAMIKGYCKFGMMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALK 576

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L   M+ +   PN  T+++L++GFC TG  + A++ F  M S G K  V +Y
Sbjct: 577 LFGQMVKQKCKPNVVTYTSLINGFCRTGDSSRAEKTFEEMRSSGLKPNVVTY 628



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/296 (31%), Positives = 146/296 (49%), Gaps = 21/296 (7%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ML+   S     S  L+ G +   K  D    LF+   + G+ P +  YN +I  +CK G
Sbjct: 476 MLHQNLSLDAFVSATLVDGFIRHGK-LDEAKKLFELTIAKGMDPGVVGYNAMIKGYCKFG 534

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            ++     + R+     +PD   ++++I G   ++ +  A  LF ++    CKPNV+TY+
Sbjct: 535 MMNDALTCVQRMKDGDHSPDEFTYSTIIDGYVKQNDLHNALKLFGQMVKQKCKPNVVTYT 594

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +LING CRTG +  A   FEEM +         KPN VTYT +I   CKEG + KA   F
Sbjct: 595 SLINGFCRTGDSSRAEKTFEEMRSSG------LKPNVVTYTILIGCFCKEGKISKACSFF 648

Query: 277 LQMKDKNINPDVVTYNSLIHGF------CYANDWNEA----NCLLIE----MMDQGVQPD 322
             M      P+ VT+N LI+G         +N  NE+      L+++    M+  G +  
Sbjct: 649 ELMLLNRCIPNDVTFNYLINGLTNNLATAVSNKANESLEIKASLMMDFFRTMISDGWEQR 708

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V  +N ++  LC +  ++ A +L + M  +G+ P+  +F+ L+ G CL GR    K
Sbjct: 709 VAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVYGLCLEGRSKEWK 764



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 140/292 (47%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L     K    +    LFK L   G  P   TY I+IN  CK         +
Sbjct: 238 PNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTETYGIMINGLCKKCNFKAVDGL 297

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       +   + S++         +E       +   GC+P++ TY+TLI+G CR
Sbjct: 298 LVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDITTYNTLISGSCR 357

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L E       K G+   PN ++YT +I   CK+G   +A +LF+ M +K  
Sbjct: 358 DGKVHEAEELLEHAI----KRGL--SPNKLSYTPLIHVYCKQGKCLRAFDLFIGMTEKGH 411

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D+V Y +L+HG   A + + A  +  +M+++GV PD   +NV+M+ LCK G++  A  
Sbjct: 412 PLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGRLSAAKL 471

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M+ + ++ +    +TL+DGF   G+++ AK+LF    + G    V  Y
Sbjct: 472 LLVEMLHQNLSLDAFVSATLVDGFIRHGKLDEAKKLFELTIAKGMDPGVVGY 523



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 78/287 (27%), Positives = 135/287 (47%), Gaps = 11/287 (3%)

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   LA+ + +  V +L + +    L P     + ++  +   G V+   + L  I    
Sbjct: 105 LLKLLARCRVFVEVENLLETMKCKDLAPTREALSFVVGAYVDSGLVNRA-LELYHIAYDI 163

Query: 173 --FTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTI 229
             + PD +A  +L+  L  + ++  A  ++ ++ K  GC  N  +   ++ GLC+     
Sbjct: 164 HNYLPDVIACNALLNALIQQKKVEIARKVYEEMVKRDGCWDNY-SVCIMVRGLCKERKVE 222

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               L       N ++G  C PN V Y T++DG  K G V++A  LF ++K K   P   
Sbjct: 223 EGRKLI------NDRWGKGCIPNIVFYNTLVDGYWKRGDVERANGLFKELKMKGFLPTTE 276

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY  +I+G C   ++   + LL+EM ++GV  +V  +N I+D   K+G   E  + L  +
Sbjct: 277 TYGIMINGLCKKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWI 336

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              G  P+ +T++TL+ G C  G+V+ A+EL       G      SY
Sbjct: 337 TENGCEPDITTYNTLISGSCRDGKVHEAEELLEHAIKRGLSPNKLSY 383



 Score = 40.4 bits (93), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 12/122 (9%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
           ++  F+ + S G    +  YN ++ C C    V+    +  ++      PD V+F +L+ 
Sbjct: 693 MMDFFRTMISDGWEQRVAAYNSVLICLCHHKMVNAALQLRDKMTGKGIFPDPVSFAALVY 752

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPN------VITYSTLINGLCRTGHTIVALNLFEEMA 239
           GLC E R  E            CK N       + YS  +N     G T  A  +F  + 
Sbjct: 753 GLCLEGRSKEWK------NTISCKLNEWELQIAVKYSQKLNPFLPKGLTSEASKVFHTLL 806

Query: 240 NG 241
            G
Sbjct: 807 EG 808


>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
 gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
          Length = 353

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 150/284 (52%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L   + ++    L   +   G  P++ T+N+LI+  C+ G V     V
Sbjct: 60  PNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEV 119

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +I +   TP+++++  L+   C + ++ +A A    + + GC P++++Y+TL+  LCR
Sbjct: 120 LEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 179

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G   VA+ L  ++ +        C P  ++Y T+IDGL K G   +A EL  +M  K +
Sbjct: 180 SGEVDVAVELLHQLKDKG------CAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGL 233

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD++TY+++  G C  +   +A     ++ D G++P+ V +N I+  LCK  +   A  
Sbjct: 234 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAID 293

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L   MI  G  PN ST++ L++G    G +  A++L   + S G
Sbjct: 294 LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEARDLLDELCSRG 337



 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/311 (29%), Positives = 149/311 (47%), Gaps = 37/311 (11%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K   Y   + L   +   G  PD+ TYN+++N  C+ GRV      L  +      P+ V
Sbjct: 4   KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 63

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           ++  ++KGLC   R  +A  L  ++   GC PNV+T++ LI+ LCR G    AL + E++
Sbjct: 64  SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 123

Query: 239 ANGNGKFGVV---------------------------------CKPNTVTYTTIIDGLCK 265
                K+G                                   C P+ V+Y T++  LC+
Sbjct: 124 P----KYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCR 179

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G VD A EL  Q+KDK   P +++YN++I G   A    EA  LL EM+ +G+QPD++T
Sbjct: 180 SGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIIT 239

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++ I   LC+  ++++A R    +   G+ PNT  ++ ++ G C     + A +LF  M 
Sbjct: 240 YSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMI 299

Query: 386 SMGCKHTVFSY 396
             GC     +Y
Sbjct: 300 GNGCMPNESTY 310



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 137/258 (53%), Gaps = 8/258 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +  +  PP + +FN+L   L +    +  L + +++   G  P+  +YN L++ FCK  +
Sbjct: 88  MGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKK 147

Query: 158 VSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +      L  ++ R C+ PD V++ +L+  LC    +  A  L  +LK  GC P +I+Y+
Sbjct: 148 MDKAMAFLDLMVSRGCY-PDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYN 206

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I+GL + G T  AL L  EM +         +P+ +TY+TI  GLC+E  ++ A   F
Sbjct: 207 TVIDGLTKAGKTKEALELLNEMVSKG------LQPDIITYSTIAAGLCREDRIEDAIRAF 260

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +++D  I P+ V YN++I G C   + + A  L   M+  G  P+  T+ ++++ L   
Sbjct: 261 GKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYE 320

Query: 337 GKMDEASRLLELMILRGV 354
           G + EA  LL+ +  RGV
Sbjct: 321 GLIKEARDLLDELCSRGV 338



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 42/143 (29%), Positives = 63/143 (44%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + L  +   P L S+N +   L K       L L   + S GL PD+ TY+ +    C+ 
Sbjct: 191 HQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMVSKGLQPDIITYSTIAAGLCRE 250

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
            R+       G++      P+ V + ++I GLC       A  LF  +   GC PN  TY
Sbjct: 251 DRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTY 310

Query: 216 STLINGLCRTGHTIVALNLFEEM 238
           + LI GL   G    A +L +E+
Sbjct: 311 TILIEGLAYEGLIKEARDLLDEL 333


>gi|242043154|ref|XP_002459448.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
 gi|241922825|gb|EER95969.1| hypothetical protein SORBIDRAFT_02g004810 [Sorghum bicolor]
          Length = 316

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/258 (33%), Positives = 142/258 (55%), Gaps = 6/258 (2%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           ++  G  P++ TY++LINC CK G  +    +   +++S   P+A  + SL+ G   E  
Sbjct: 1   MSRDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN 60

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           +++   +   +   G +P+   ++  I   C+ G    A   F +M     + G +  P+
Sbjct: 61  LVDMNNVKDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQ----QLGFM--PD 114

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            VTYTT+IDGLCK G +D A   F QM D  ++P+++T+ +LIHGF     W +A  L  
Sbjct: 115 IVTYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFY 174

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EMMD+G+ P+V TFN ++D L K GK+ EA +L +LM   G  PN  +++T++ G+ + G
Sbjct: 175 EMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAG 234

Query: 373 RVNHAKELFVSMESMGCK 390
            V    +L   M  +G K
Sbjct: 235 EVGEVMKLLDDMLLIGLK 252



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/268 (30%), Positives = 138/268 (51%), Gaps = 6/268 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++++L  CL K+        +F  +  +G  P+  TY  L++ +   G +     V
Sbjct: 8   PNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGNLVDMNNV 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++++   PD   F   I   C   R+ EA+  F K++  G  P+++TY+T+I+GLC+
Sbjct: 68  KDLMVQNGMRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCK 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A++ F +M +          PN +T+TT+I G    G  +KA+ELF +M D+ I
Sbjct: 128 IGRLDDAMSRFCQMIDDG------LSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGI 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V T+NS+I          EA  L   M   G +P+VV++N ++      G++ E  +
Sbjct: 182 PPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIAGEVGEVMK 241

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTG 372
           LL+ M+L G+ PN    +TL+DG    G
Sbjct: 242 LLDDMLLIGLKPNAVNLNTLLDGMLSIG 269



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 70/227 (30%), Positives = 116/227 (51%), Gaps = 6/227 (2%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R    P+ V ++ LI  LC      EA  +F  +   G KPN  TY +L++G    G+ +
Sbjct: 3   RDGQGPNVVTYSMLINCLCKSGLRAEAREIFNSMIQSGQKPNAATYRSLLHGYATEGN-L 61

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           V +N  +++   NG      +P+   +   I   CK G +D+A   F +M+     PD+V
Sbjct: 62  VDMNNVKDLMVQNG-----MRPDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIV 116

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY ++I G C     ++A     +M+D G+ P+++TF  ++      GK ++A  L   M
Sbjct: 117 TYTTVIDGLCKIGRLDDAMSRFCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEM 176

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + RG+ PN +TF++++D     G+V  A++LF  M   G K  V SY
Sbjct: 177 MDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSY 223



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 103/243 (42%), Gaps = 25/243 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    FN+      K    D     F ++   G  PD+ TY  +I+  CK+GR+      
Sbjct: 78  PDRHVFNIEIYAYCKCGRLDEASLTFNKMQQLGFMPDIVTYTTVIDGLCKIGRLDDAMSR 137

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++    +P+ + FT+LI G     +  +A  LF ++   G  PNV T++++I+ L +
Sbjct: 138 FCQMIDDGLSPNIITFTTLIHGFSMYGKWEKAEELFYEMMDRGIPPNVNTFNSMIDRLFK 197

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM----- 279
            G    A  LF+ M     K      PN V+Y T+I G    G V +  +L   M     
Sbjct: 198 EGKVTEARKLFDLMPRAGAK------PNVVSYNTMIHGYFIAGEVGEVMKLLDDMLLIGL 251

Query: 280 KDKNIN--------------PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           K   +N              P+V T  +LI   C  +   +   L  EM+ +  + D +T
Sbjct: 252 KPNAVNLNTLLDGMLSIGLKPNVDTCKTLIDSCCEDDRIEDILTLFREMLSKADKTDTIT 311

Query: 326 FNV 328
            N+
Sbjct: 312 ENI 314



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 58/143 (40%), Gaps = 16/143 (11%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           Y +  R  PP + +FN +   L K         LF  +   G  P++ +YN +I+ +   
Sbjct: 174 YEMMDRGIPPNVNTFNSMIDRLFKEGKVTEARKLFDLMPRAGAKPNVVSYNTMIHGYFIA 233

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G V     +L  +L     P+AV   +L+ G+                 + G KPNV T 
Sbjct: 234 GEVGEVMKLLDDMLLIGLKPNAVNLNTLLDGML----------------SIGLKPNVDTC 277

Query: 216 STLINGLCRTGHTIVALNLFEEM 238
            TLI+  C        L LF EM
Sbjct: 278 KTLIDSCCEDDRIEDILTLFREM 300


>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1136

 Score =  163 bits (412), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 83  TAITPNEAFCIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           + +   E   ++ ++  M  R   P + +FN+L   L     ++    L +++  +G  P
Sbjct: 207 SVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 266

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            + TYN +++ +CK GR      +L  +       D   +  LI  LC  +RI +   L 
Sbjct: 267 TIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLL 326

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             ++     PN +TY+TLING    G  ++A  L  EM +    FG+   PN VT+  +I
Sbjct: 327 RDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS----FGL--SPNHVTFNALI 380

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG   EG   +A ++F  M+ K + P  V+Y  L+ G C   +++ A    + M   GV 
Sbjct: 381 DGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVC 440

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
              +T+  ++D LCKNG +DEA  LL  M   G++P+  T+S L++GFC  GR   AKE+
Sbjct: 441 VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 500

Query: 381 FVSMESMG 388
              +  +G
Sbjct: 501 VCRIYRVG 508



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 29/314 (9%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P + ++N +     K   +   + L   + S G+  D+ TYN+LI+  C+  R++ G++
Sbjct: 265 APTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYL 324

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  + +    P+ V + +LI G   E +++ A+ L  ++ +FG  PN +T++ LI+G  
Sbjct: 325 LLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHI 384

Query: 224 RTGHTIVALNLFEEM-ANG----NGKFGVV----CK--------------------PNTV 254
             G+   AL +F  M A G       +GV+    CK                       +
Sbjct: 385 SEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 444

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYT +IDGLCK GF+D+A  L  +M    I+PD+VTY++LI+GFC    +  A  ++  +
Sbjct: 445 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 504

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
              G+ P+ + ++ ++   C+ G + EA R+ E MIL G   +  TF+ L+   C  G+V
Sbjct: 505 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 564

Query: 375 NHAKELFVSMESMG 388
             A+E    M S G
Sbjct: 565 AEAEEFMRCMTSDG 578



 Score =  134 bits (337), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 8/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M  +   P   T  +LL G L K  H        K L++     D   YN L
Sbjct: 601 KAFSVFDEMTKVGHHPTFFTYGSLLKG-LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 659

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG- 207
           +   CK G ++    + G +++    PD+  +TSLI GLC + + + A     + +A G 
Sbjct: 660 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 719

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN + Y+  ++G+ + G     +   E+M N      +   P+ VT   +IDG  + G
Sbjct: 720 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIVTTNAMIDGYSRMG 773

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++K  +L  +M ++N  P++ TYN L+HG+    D + +  L   ++  G+ PD +T +
Sbjct: 774 KIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCH 833

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  +C++  ++   ++L+  I RGV  +  TF+ L+   C  G +N A +L   M S+
Sbjct: 834 SLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSL 893

Query: 388 G 388
           G
Sbjct: 894 G 894



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 9/307 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G I+     EA  +F YM+  +   P   S+ +L   L K   +D     + R+   G+
Sbjct: 381 DGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 439

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
                TY  +I+  CK G +    V+L  + +    PD V +++LI G C   R   A  
Sbjct: 440 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 499

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYT 257
           +  ++   G  PN I YSTLI   CR G    A+ ++E M   G+ +       +  T+ 
Sbjct: 500 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFN 552

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++  LCK G V +A+E    M    I P+ V+++ LI+G+  + +  +A  +  EM   
Sbjct: 553 VLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV 612

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P   T+  ++  LCK G + EA + L+ +       +T  ++TL+   C +G +  A
Sbjct: 613 GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKA 672

Query: 378 KELFVSM 384
             LF  M
Sbjct: 673 VSLFGEM 679



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 22/296 (7%)

Query: 117 LAKTKHYDTVLSLFKRLN-----STGLFPDLYT-----------YNILINCFCKMGRVSH 160
           L + + YD    + K L+     S+ +F  L T           Y+ILI  + + G +  
Sbjct: 122 LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 181

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +    F P      +++  +      +   +   ++      P+V T++ LIN
Sbjct: 182 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 241

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC  G    +  L ++M     K G    P  VTY T++   CK+G    A EL   MK
Sbjct: 242 VLCAEGSFEKSSYLMQKME----KSGYA--PTIVTYNTVLHWYCKKGRFKAAIELLDHMK 295

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K ++ DV TYN LIH  C +N   +   LL +M  + + P+ VT+N +++     GK+ 
Sbjct: 296 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 355

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            AS+LL  M+  G++PN  TF+ L+DG    G    A ++F  ME+ G   +  SY
Sbjct: 356 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 411



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + + ML+   SP  +T FN L        ++   L +F  + + GL P   +Y +L++  
Sbjct: 360 LLNEMLSFGLSPNHVT-FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 418

Query: 153 CKMGR--VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
           CK     ++ GF +  R+ R+      + +T +I GLC    + EA  L  ++   G  P
Sbjct: 419 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 476

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +++TYS LING C+ G    A  +   +      + V   PN + Y+T+I   C+ G + 
Sbjct: 477 DIVTYSALINGFCKVGRFKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 530

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           +A  ++  M  +    D  T+N L+   C A    EA   +  M   G+ P+ V+F+ ++
Sbjct: 531 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 590

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +    +G+  +A  + + M   G +P   T+ +L+ G C  G +  A++   S+ ++
Sbjct: 591 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV 647



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 12/295 (4%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + + N +    ++    +    L   + +    P+L TYNIL++ + K   VS  F++
Sbjct: 757  PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLL 816

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP---NVITYSTLING 221
               I+ +   PD +   SL+ G+C ES ++E       LKAF C+    +  T++ LI+ 
Sbjct: 817  YRSIILNGILPDKLTCHSLVLGIC-ESNMLEIG--LKILKAFICRGVEVDRYTFNMLISK 873

Query: 222  LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             C  G    A +L + M +     G+    +T     ++  L +     +++ +  +M  
Sbjct: 874  CCANGEINWAFDLVKVMTS----LGISLDKDTCD--AMVSVLNRNHRFQESRMVLHEMSK 927

Query: 282  KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
            + I+P+   Y  LI+G C   D   A  +  EM+   + P  V  + ++  L K GK DE
Sbjct: 928  QGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 987

Query: 342  ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A+ LL  M+   + P  ++F+TLM   C  G V  A EL V M + G K  + SY
Sbjct: 988  ATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSY 1042



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 7/265 (2%)

Query: 104  PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P  LT  +L+ G + ++   +  L + K     G+  D YT+N+LI+  C  G ++  F 
Sbjct: 827  PDKLTCHSLVLG-ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFD 885

Query: 164  VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            ++  +     + D     +++  L    R  E+  +  ++   G  P    Y  LINGLC
Sbjct: 886  LVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLC 945

Query: 224  RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            R G    A  + EEM         +C PN V  + ++  L K G  D+A  L   M    
Sbjct: 946  RVGDIKTAFVVKEEMIAHK-----ICPPN-VAESAMVRALAKCGKADEATLLLRFMLKMK 999

Query: 284  INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            + P + ++ +L+H  C   +  EA  L + M + G++ D+V++NV++  LC  G M  A 
Sbjct: 1000 LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1059

Query: 344  RLLELMILRGVNPNTSTFSTLMDGF 368
             L E M   G   N +T+  L+ G 
Sbjct: 1060 ELYEEMKGDGFLANATTYKALIRGL 1084



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 6/284 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P LT++N+L    +K K   T   L++ +   G+ PD  T + L+   C+   +  G  +
Sbjct: 792  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 851

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L   +      D   F  LI   CA   I  A  L   + + G   +  T   +++ L R
Sbjct: 852  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 911

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  +  +  EM+    K G+   P +  Y  +I+GLC+ G +  A  +  +M    I
Sbjct: 912  NHRFQESRMVLHEMS----KQGI--SPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 965

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             P  V  ++++         +EA  LL  M+   + P + +F  +M   CKNG + EA  
Sbjct: 966  CPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALE 1025

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L  +M   G+  +  +++ L+ G C  G +  A EL+  M+  G
Sbjct: 1026 LRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1069



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 90   AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            AF + + M+  +  PP +   + +   LAK    D    L + +    L P + ++  L+
Sbjct: 953  AFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 1011

Query: 150  NCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            +  CK G V    + L  ++ +C    D V++  LI GLCA+  +  A  L+ ++K  G 
Sbjct: 1012 HLCCKNGNVIEA-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGF 1070

Query: 209  KPNVITYSTLINGL 222
              N  TY  LI GL
Sbjct: 1071 LANATTYKALIRGL 1084



 Score = 47.0 bits (110), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 87   PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
             +EA  +  +ML M+   P + SF  L     K  +    L L   +++ GL  DL +YN
Sbjct: 985  ADEATLLLRFMLKMKL-VPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1043

Query: 147  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            +LI   C  G ++  F +   +    F  +A  + +LI+GL A       A +  K
Sbjct: 1044 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1099


>gi|410109871|gb|AFV61015.1| pentatricopeptide repeat-containing protein 11, partial [Aloysia
           barbata]
          Length = 429

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 87/287 (30%), Positives = 156/287 (54%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN+L     K        S+F  +   GL P + +YN L+N + ++G ++ GF +   +L
Sbjct: 143 FNILMHRFCKDGDIRIAQSVFDAIAKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLKSAML 202

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C+ G   
Sbjct: 203 ASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLXPNGVTFTTLIDGHCKNGRVD 262

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           +A+ ++++M + +        P+ +TY T+I GLCK+G + +A +L  +M  K +  D +
Sbjct: 263 LAMEIYKQMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHDLIDEMSMKGLKXDKI 316

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A ++L  M
Sbjct: 317 TYTTLIDGCCKEGDLDAAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREM 376

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  G+ P+T T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 377 LSVGLKPDTXTYTMIINEFCKKGDVWKGSKLLKDMQRNGHAPSVVTY 423



 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/263 (34%), Positives = 144/263 (54%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    +    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 173 PSVVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 232

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++ ++ +    P++ITY+TLI GLC+
Sbjct: 233 FDEMLVKGLXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIYGLCK 292

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A +L +EM+          K + +TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 293 KGDLKQAHDLIDEMSMKG------LKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENI 346

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + + S+
Sbjct: 347 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTYTMIINEFCKKGDVWKGSK 406

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 407 LLKDMQRNGHAPSVVTYNVLMNG 429



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/280 (32%), Positives = 144/280 (51%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V      +   G       +NIL++ FCK G +     V   I +    P 
Sbjct: 115 LMKLKYFKLVWGFXXXIXXXGXXXXXXFFNILMHRFCKDGDIRIAQSVFDAIAKWGLRPS 174

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 175 VVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 234

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM            PN VT+TT+IDG CK G VD A E++ QM  +++ PD++TYN+LI+
Sbjct: 235 EMLVKG------LXPNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQSLLPDLITYNTLIY 288

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++ D +T+  ++D  CK G +D A    + MI   +  
Sbjct: 289 GLCKKGDLKQAHDLIDEMSMKGLKXDKITYTTLIDGCCKEGDLDAAFEHRKRMIQENIRL 348

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 349 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDTXTY 388


>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1274

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 83  TAITPNEAFCIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           + +   E   ++ ++  M  R   P + +FN+L   L     ++    L +++  +G  P
Sbjct: 167 SVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 226

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            + TYN +++ +CK GR      +L  +       D   +  LI  LC  +RI +   L 
Sbjct: 227 TIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLL 286

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             ++     PN +TY+TLING    G  ++A  L  EM +    FG+   PN VT+  +I
Sbjct: 287 RDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS----FGL--SPNHVTFNALI 340

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG   EG   +A ++F  M+ K + P  V+Y  L+ G C   +++ A    + M   GV 
Sbjct: 341 DGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVC 400

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
              +T+  ++D LCKNG +DEA  LL  M   G++P+  T+S L++GFC  GR   AKE+
Sbjct: 401 VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 460

Query: 381 FVSMESMG 388
              +  +G
Sbjct: 461 VCRIYRVG 468



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 29/314 (9%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P + ++N +     K   +   + L   + S G+  D+ TYN+LI+  C+  R++ G++
Sbjct: 225 APTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYL 284

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  + +    P+ V + +LI G   E +++ A+ L  ++ +FG  PN +T++ LI+G  
Sbjct: 285 LLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHI 344

Query: 224 RTGHTIVALNLFEEM-ANG----NGKFGVV----CK--------------------PNTV 254
             G+   AL +F  M A G       +GV+    CK                       +
Sbjct: 345 SEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 404

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYT +IDGLCK GF+D+A  L  +M    I+PD+VTY++LI+GFC    +  A  ++  +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 464

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
              G+ P+ + ++ ++   C+ G + EA R+ E MIL G   +  TF+ L+   C  G+V
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 524

Query: 375 NHAKELFVSMESMG 388
             A+E    M S G
Sbjct: 525 AEAEEFMRCMTSDG 538



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 8/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M  +   P   T  +LL G L K  H        K L++     D   YN L
Sbjct: 561 KAFSVFDEMTKVGHHPTFFTYGSLLKG-LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG- 207
           +   CK G ++    + G +++    PD+  +TSLI GLC + + + A     + +A G 
Sbjct: 620 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 679

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN + Y+  ++G+ + G     +   E+M N      +   P+ VT   +IDG  + G
Sbjct: 680 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIVTTNAMIDGYSRMG 733

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++K  +L  +M ++N  P++ TYN L+HG+    D + +  L   ++  G+ PD +T +
Sbjct: 734 KIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCH 793

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  +C++  ++   ++L+  I RGV  +  TF+ L+   C  G +N A +L   M S+
Sbjct: 794 SLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSL 853

Query: 388 G 388
           G
Sbjct: 854 G 854



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 9/307 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G I+     EA  +F YM+  +   P   S+ +L   L K   +D     + R+   G+
Sbjct: 341 DGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 399

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
                TY  +I+  CK G +    V+L  + +    PD V +++LI G C   R   A  
Sbjct: 400 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 459

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYT 257
           +  ++   G  PN I YSTLI   CR G    A+ ++E M   G+ +       +  T+ 
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFN 512

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++  LCK G V +A+E    M    I P+ V+++ LI+G+  + +  +A  +  EM   
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV 572

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P   T+  ++  LCK G + EA + L+ +       +T  ++TL+   C +G +  A
Sbjct: 573 GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKA 632

Query: 378 KELFVSM 384
             LF  M
Sbjct: 633 VSLFGEM 639



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 22/296 (7%)

Query: 117 LAKTKHYDTVLSLFKRLN-----STGLFPDLYT-----------YNILINCFCKMGRVSH 160
           L + + YD    + K L+     S+ +F  L T           Y+ILI  + + G +  
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 141

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +    F P      +++  +      +   +   ++      P+V T++ LIN
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 201

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC  G    +  L ++M     K G    P  VTY T++   CK+G    A EL   MK
Sbjct: 202 VLCAEGSFEKSSYLMQKME----KSGYA--PTIVTYNTVLHWYCKKGRFKAAIELLDHMK 255

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K ++ DV TYN LIH  C +N   +   LL +M  + + P+ VT+N +++     GK+ 
Sbjct: 256 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            AS+LL  M+  G++PN  TF+ L+DG    G    A ++F  ME+ G   +  SY
Sbjct: 316 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371



 Score =  114 bits (285), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + + ML+   SP  +T FN L        ++   L +F  + + GL P   +Y +L++  
Sbjct: 320 LLNEMLSFGLSPNHVT-FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 153 CKMGR--VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
           CK     ++ GF +  R+ R+      + +T +I GLC    + EA  L  ++   G  P
Sbjct: 379 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 436

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +++TYS LING C+ G    A  +   +      + V   PN + Y+T+I   C+ G + 
Sbjct: 437 DIVTYSALINGFCKVGRFKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           +A  ++  M  +    D  T+N L+   C A    EA   +  M   G+ P+ V+F+ ++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +    +G+  +A  + + M   G +P   T+ +L+ G C  G +  A++   S+ ++
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV 607



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 12/295 (4%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + + N +    ++    +    L   + +    P+L TYNIL++ + K   VS  F++
Sbjct: 717  PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLL 776

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP---NVITYSTLING 221
               I+ +   PD +   SL+ G+C ES ++E       LKAF C+    +  T++ LI+ 
Sbjct: 777  YRSIILNGILPDKLTCHSLVLGIC-ESNMLEIG--LKILKAFICRGVEVDRYTFNMLISK 833

Query: 222  LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             C  G    A +L + M +     G+    +T     ++  L +     +++ +  +M  
Sbjct: 834  CCANGEINWAFDLVKVMTS----LGISLDKDTCD--AMVSVLNRNHRFQESRMVLHEMSK 887

Query: 282  KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
            + I+P+   Y  LI+G C   D   A  +  EM+   + P  V  + ++  L K GK DE
Sbjct: 888  QGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 947

Query: 342  ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A+ LL  M+   + P  ++F+TLM   C  G V  A EL V M + G K  + SY
Sbjct: 948  ATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSY 1002



 Score = 95.5 bits (236), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 7/265 (2%)

Query: 104  PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P  LT  +L+ G + ++   +  L + K     G+  D YT+N+LI+  C  G ++  F 
Sbjct: 787  PDKLTCHSLVLG-ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFD 845

Query: 164  VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            ++  +     + D     +++  L    R  E+  +  ++   G  P    Y  LINGLC
Sbjct: 846  LVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLC 905

Query: 224  RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            R G    A  + EEM         +C PN V  + ++  L K G  D+A  L   M    
Sbjct: 906  RVGDIKTAFVVKEEMIAHK-----ICPPN-VAESAMVRALAKCGKADEATLLLRFMLKMK 959

Query: 284  INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            + P + ++ +L+H  C   +  EA  L + M + G++ D+V++NV++  LC  G M  A 
Sbjct: 960  LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1019

Query: 344  RLLELMILRGVNPNTSTFSTLMDGF 368
             L E M   G   N +T+  L+ G 
Sbjct: 1020 ELYEEMKGDGFLANATTYKALIRGL 1044



 Score = 88.2 bits (217), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 6/284 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P LT++N+L    +K K   T   L++ +   G+ PD  T + L+   C+   +  G  +
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L   +      D   F  LI   CA   I  A  L   + + G   +  T   +++ L R
Sbjct: 812  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  +  +  EM+    K G+   P +  Y  +I+GLC+ G +  A  +  +M    I
Sbjct: 872  NHRFQESRMVLHEMS----KQGI--SPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 925

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             P  V  ++++         +EA  LL  M+   + P + +F  +M   CKNG + EA  
Sbjct: 926  CPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALE 985

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L  +M   G+  +  +++ L+ G C  G +  A EL+  M+  G
Sbjct: 986  LRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1029



 Score = 51.2 bits (121), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/144 (28%), Positives = 66/144 (45%), Gaps = 8/144 (5%)

Query: 80   GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
            GDI       AF + + M+  +  PP +   + +   LAK    D    L + +    L 
Sbjct: 908  GDIKT-----AFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKADEATLLLRFMLKMKLV 961

Query: 140  PDLYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + ++  L++  CK G V    + L  ++ +C    D V++  LI GLCA+  +  A  
Sbjct: 962  PTIASFTTLMHLCCKNGNVIEA-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFE 1020

Query: 199  LFTKLKAFGCKPNVITYSTLINGL 222
            L+ ++K  G   N  TY  LI GL
Sbjct: 1021 LYEEMKGDGFLANATTYKALIRGL 1044



 Score = 47.4 bits (111), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 87   PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
             +EA  +  +ML M+   P + SF  L     K  +    L L   +++ GL  DL +YN
Sbjct: 945  ADEATLLLRFMLKMKL-VPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1003

Query: 147  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            +LI   C  G ++  F +   +    F  +A  + +LI+GL A       A +  K
Sbjct: 1004 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1059


>gi|147797621|emb|CAN62945.1| hypothetical protein VITISV_002230 [Vitis vinifera]
          Length = 912

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/256 (32%), Positives = 145/256 (56%), Gaps = 9/256 (3%)

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           L++YN ++  F K  R+     V  +I++     PD   +T++I+G C    I  A  +F
Sbjct: 217 LFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVF 276

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   GCKPN++TY+T+ING C+ G    A+ + ++M          C P+TVTYTT+I
Sbjct: 277 DEM---GCKPNLVTYNTMINGFCKKGLMESAMKIVDQMTETED-----CMPDTVTYTTLI 328

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG CK G +++A +   +M  +N  P+V+TYN++I+G C   + +EA  ++  M   G++
Sbjct: 329 DGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLK 388

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +V T   I+  LC  GK+D+A+R L+ M+  G+  +   +  +++ +C  G+ + A  L
Sbjct: 389 DNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISL 448

Query: 381 FVSMESMGCKHTVFSY 396
              M+S G   +V S+
Sbjct: 449 LKEMKSRGINPSVSSF 464



 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 153/292 (52%), Gaps = 11/292 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFVVL 165
           L S+N + G   K        ++F ++   G+  PD+ TY  +I  +CKMG + +   V 
Sbjct: 217 LFSYNAILGVFVKANRIMLARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVF 276

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCR 224
             +   C  P+ V + ++I G C +  +  A  +  ++ +   C P+ +TY+TLI+G C+
Sbjct: 277 DEM--GC-KPNLVTYNTMINGFCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCK 333

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+   EEM + N      C+PN +TY  II GLC  G VD+AK +  +M+   +
Sbjct: 334 RGELEEAMKYMEEMVSRN------CEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGL 387

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             +V T+ S++ G C     ++A   L EM+  G++ D   + V+++E CK GK D+A  
Sbjct: 388 KDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAIS 447

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL+ M  RG+NP+ S+F+ +      +G+ + A  +   M+ +GC     SY
Sbjct: 448 LLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSY 499



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 147/299 (49%), Gaps = 15/299 (5%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +FD ++      P ++++  +     K    +   ++F  +   G  P+L TYN +I
Sbjct: 236 ARAVFDQIVKEGVVKPDVSTYTTIIRGYCKMGMIENAKNVFDEM---GCKPNLVTYNTMI 292

Query: 150 NCFCKMGRVSHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           N FCK G +     ++ ++  +  C  PD V +T+LI G C    + EA     ++ +  
Sbjct: 293 NGFCKKGLMESAMKIVDQMTETEDCM-PDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRN 351

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           C+PNV+TY+ +I GLC  G+   A  +   M  NG        K N  T+T+I+ GLC  
Sbjct: 352 CEPNVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNG-------LKDNVATHTSILKGLCVV 404

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D A     +M    +  D   Y  +++ +C     ++A  LL EM  +G+ P V +F
Sbjct: 405 GKLDDAARHLKEMVGLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSF 464

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHAKELFVSM 384
           N +   L ++GK D+A  +L  M   G  PN  ++ST++DG C   GR++  +E    M
Sbjct: 465 NAVFRILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDM 523



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 84/334 (25%), Positives = 153/334 (45%), Gaps = 16/334 (4%)

Query: 63  RASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMR------PSPPPLTSFNLLFGC 116
           RA  +Q +KE          T I     +C    + N +         P L ++N +   
Sbjct: 237 RAVFDQIVKEGVVKPDVSTYTTII--RGYCKMGMIENAKNVFDEMGCKPNLVTYNTMING 294

Query: 117 LAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP 175
             K    ++ + +  ++  T    PD  TY  LI+ +CK G +      +  ++     P
Sbjct: 295 FCKKGLMESAMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEP 354

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           + + + ++I GLC    + EA  + T+++  G K NV T+++++ GLC  G    A    
Sbjct: 355 NVLTYNAIIYGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHL 414

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           +EM       G+  + +   Y  +++  CK G  D A  L  +MK + INP V ++N++ 
Sbjct: 415 KEMV------GLGMEADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVF 468

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK-NGKMDEASRLLELMILRGV 354
                +   ++A  +L +M   G  P+ ++++ ++D LCK  G+M E    ++ M   G 
Sbjct: 469 RILVESGKTDKAGLILRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGH 528

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + + S +S L+ G+C  G  + A  LF  M  MG
Sbjct: 529 HLDASMYSWLVKGYCEDGNADMAMRLFCEMLDMG 562



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/307 (22%), Positives = 125/307 (40%), Gaps = 30/307 (9%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I D M       P   ++  L     K    +  +   + + S    P++ TYN +I
Sbjct: 304 AMKIVDQMTETEDCMPDTVTYTTLIDGYCKRGELEEAMKYMEEMVSRNCEPNVLTYNAII 363

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              C  G V     ++ R+  +    +    TS++KGLC   ++ +AA    ++   G +
Sbjct: 364 YGLCLNGNVDEAKRMMTRMRLNGLKDNVATHTSILKGLCVVGKLDDAARHLKEMVGLGME 423

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEM---------------------ANGNGKFGVV 248
            +   Y  ++N  C+ G    A++L +EM                     +    K G++
Sbjct: 424 ADAKAYGVVVNEYCKIGKADDAISLLKEMKSRGINPSVSSFNAVFRILVESGKTDKAGLI 483

Query: 249 --------CKPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                   C PN ++Y+T+IDGLCK +G + + +E    M     + D   Y+ L+ G+C
Sbjct: 484 LRQMKQLGCTPNFLSYSTVIDGLCKAKGRMHEVEEFVDDMCRNGHHLDASMYSWLVKGYC 543

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              + + A  L  EM+D G   ++ +F   +  L    K  E  +  E M  R    +  
Sbjct: 544 EDGNADMAMRLFCEMLDMGYVINLESFLAFVKGLSAKEKAFEVEKFFEEMSRRCPGIDIH 603

Query: 360 TFSTLMD 366
            +  ++D
Sbjct: 604 KYRRILD 610


>gi|388513011|gb|AFK44567.1| unknown [Medicago truncatula]
          Length = 348

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 148/272 (54%), Gaps = 6/272 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   + K KH +    L+  + S G+ P++ TY+ LI+ F  +G++     +  +I+
Sbjct: 80  YNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAIDLFNKII 139

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                PD   F  L+ G C + ++ E   +F  +   G  P+V+TY++L++G        
Sbjct: 140 LENIKPDGYTFNILVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVN 199

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A ++F  MA G         P+  +Y  +I+G CK   VDKA  LF +M  KNI P+VV
Sbjct: 200 TAKSIFNTMAQGG------VNPDIRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVV 253

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYNSLI G   +   + A  L+ +M D+GV P+++T+N I+D L K  ++D+A  L+   
Sbjct: 254 TYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKF 313

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             +G+ P+  T++ L+DG C  GR+  A+ +F
Sbjct: 314 KDQGIQPSMYTYTILIDGLCKGGRLKDARNIF 345



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/263 (32%), Positives = 142/263 (53%), Gaps = 13/263 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+AF ++  M++   SP  +T   L+ G     K  D +  LF ++    + PD YT+NI
Sbjct: 94  NDAFDLYSEMVSKGISPNVVTYSALISGFFVVGKLKDAI-DLFNKIILENIKPDGYTFNI 152

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ FCK  ++  G  V   +++    PD V + SL+ G      +  A ++F  +   G
Sbjct: 153 LVDGFCKDRKMKEGKTVFAMMMKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGG 212

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLC 264
             P++ +Y+ LING C+      A+NLF EM          CK   PN VTY ++IDGL 
Sbjct: 213 VNPDIRSYNILINGFCKIKKVDKAMNLFNEMH---------CKNIIPNVVTYNSLIDGLS 263

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G +  A +L  QM D+ + P+++TYNS+I      +  ++A  L+ +  DQG+QP + 
Sbjct: 264 KSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQGIQPSMY 323

Query: 325 TFNVIMDELCKNGKMDEASRLLE 347
           T+ +++D LCK G++ +A  + E
Sbjct: 324 TYTILIDGLCKGGRLKDARNIFE 346



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/297 (29%), Positives = 154/297 (51%), Gaps = 7/297 (2%)

Query: 100 MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS 159
           M   P  +T   L+ G   K + +   L    +L + G   D  +Y  LI+  CK+G   
Sbjct: 1   MGYHPNTITLNTLIKGLCLKGQIHQAFL-FHDKLVALGFHLDQVSYGTLIHGLCKVGETR 59

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
               +L R+       +AV + ++I G+C +  + +A  L++++ + G  PNV+TYS LI
Sbjct: 60  AALDLLQRVDGKLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALI 119

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +G    G    A++LF ++   N       KP+  T+  ++DG CK+  + + K +F  M
Sbjct: 120 SGFFVVGKLKDAIDLFNKIILEN------IKPDGYTFNILVDGFCKDRKMKEGKTVFAMM 173

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             + I PDVVTYNSL+ G+    + N A  +   M   GV PD+ ++N++++  CK  K+
Sbjct: 174 MKQGIIPDVVTYNSLVDGYRLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKV 233

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           D+A  L   M  + + PN  T+++L+DG   +GR+++A +L   M   G    + +Y
Sbjct: 234 DKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTY 290



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 1/151 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  IF+ M     +P  + S+N+L     K K  D  ++LF  ++   + P++ TYN 
Sbjct: 199 NTAKSIFNTMAQGGVNPD-IRSYNILINGFCKIKKVDKAMNLFNEMHCKNIIPNVVTYNS 257

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K GR+S+   ++ ++      P+ + + S+I  L    ++ +A AL TK K  G
Sbjct: 258 LIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIIDALFKTHQVDKAIALITKFKDQG 317

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            +P++ TY+ LI+GLC+ G    A N+FE++
Sbjct: 318 IQPSMYTYTILIDGLCKGGRLKDARNIFEDL 348


>gi|255660854|gb|ACU25596.1| pentatricopeptide repeat-containing protein [Stachytarpheta
           cayennensis]
          Length = 418

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/274 (33%), Positives = 146/274 (53%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L + +++  V   +K +   G    LY +NIL+  FCK G +     V   I +    P 
Sbjct: 111 LMEFRYFKLVWDFYKEVLECGYPASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPS 170

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V+F +LI G      + E   L + + A G +P+V TYS LINGLC+ G    A  LF 
Sbjct: 171 VVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFN 230

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM +     G+V  PN VT+TT+I G CK   VD A E++ QM  + ++PD++TYN+LI+
Sbjct: 231 EMLDN----GLV--PNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIY 284

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   +  + + L+ EM+  G++PD +++  ++D  CK G ++ A  L   MI   +  
Sbjct: 285 GLCKKGELKQVHDLIDEMIMNGLKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRL 344

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+   C  GR   A+++   M S+G K
Sbjct: 345 DDVAYTALISCLCREGRAGDAEKMLREMLSVGLK 378



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 138/257 (53%), Gaps = 8/257 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFN L     K    D    L   ++++G  PD+YTY+ILIN  CK G++     +
Sbjct: 169 PSVVSFNTLINGYIKLGDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANEL 228

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L +   P+ V FT+LI G C   ++  A  ++ ++ + G  P++ITY+TLI GLC+
Sbjct: 229 FNEMLDNGLVPNGVTFTTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCK 288

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G      +L +EM  NG        KP+ ++YTT+IDG CKEG ++ A EL  +M  ++
Sbjct: 289 KGELKQVHDLIDEMIMNG-------LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQES 341

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I  D V Y +LI   C      +A  +L EM+  G++PD  T+ +I++E CK      AS
Sbjct: 342 IRLDDVAYTALISCLCREGRAGDAEKMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTAS 401

Query: 344 RLLELMILRGVNPNTST 360
           +LL  M   G  P   T
Sbjct: 402 KLLREMQRDGPVPGVVT 418



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 83/285 (29%), Positives = 147/285 (51%), Gaps = 6/285 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + ++N LIN + K+G +  GF 
Sbjct: 133 PASLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFR 192

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GLC E ++ EA  LF ++   G  PN +T++TLI+G C
Sbjct: 193 LKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTFTTLIHGHC 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +     +A+ ++++M +          P+ +TY T+I GLCK+G + +  +L  +M    
Sbjct: 253 KNEKVDLAMEIYKQMLSQG------LSPDLITYNTLIYGLCKKGELKQVHDLIDEMIMNG 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD ++Y +LI G C   D   A  L  +M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 307 LKPDKISYTTLIDGSCKEGDLEIALELRNKMIQESIRLDDVAYTALISCLCREGRAGDAE 366

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++L  M+  G+ P+  T++ +++ FC       A +L   M+  G
Sbjct: 367 KMLREMLSVGLKPDNGTYTMIINEFCKKRDSKTASKLLREMQRDG 411



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 102/190 (53%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L+   C+ G   +A ++F+ +     K+G+  +P+ V++ T+I+G  K 
Sbjct: 131 GYPASLYFFNILMQRFCKEGEMRLAQSVFDAIT----KWGL--RPSVVSFNTLINGYIKL 184

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+   L   M      PDV TY+ LI+G C     +EAN L  EM+D G+ P+ VTF
Sbjct: 185 GDLDEGFRLKSAMHASGAQPDVYTYSILINGLCKEGKLDEANELFNEMLDNGLVPNGVTF 244

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++   CKN K+D A  + + M+ +G++P+  T++TL+ G C  G +    +L   M  
Sbjct: 245 TTLIHGHCKNEKVDLAMEIYKQMLSQGLSPDLITYNTLIYGLCKKGELKQVHDLIDEMIM 304

Query: 387 MGCKHTVFSY 396
            G K    SY
Sbjct: 305 NGLKPDKISY 314



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVV--CKPNTVTYTTIIDGL-- 263
           +Y T+I+ LC     I A +L + + +  GK      F  +   K   ++   +  GL  
Sbjct: 15  SYCTMIHLLCTHQMLIEAKSLIQVVVSRKGKDSASDVFEAILETKGTQISDFYVFSGLMI 74

Query: 264 --CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GFV  A + F   K   I     T   ++        +        E+++ G   
Sbjct: 75  AYLESGFVRDAVQCFRLTKQHKIRVPFDTCRKVLEHLMEFRYFKLVWDFYKEVLECGYPA 134

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK G+M  A  + + +   G+ P+  +F+TL++G+   G ++    L 
Sbjct: 135 SLYFFNILMQRFCKEGEMRLAQSVFDAITKWGLRPSVVSFNTLINGYIKLGDLDEGFRLK 194

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 195 SAMHASGAQPDVYTY 209


>gi|255563546|ref|XP_002522775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538013|gb|EEF39626.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 1071

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 154/285 (54%), Gaps = 8/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K   Y   L L  ++ S G+  D  TYN+L++  CK  R + G+++
Sbjct: 201 PSVVTYNTVLNWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLL 260

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++ +   +P+ + + S+I G   E +I  A  +F ++      PN +TY+ LI+G C 
Sbjct: 261 LKKMRKRMISPNEITYNSIINGFVKEGKIGAATRIFQEMSMLNLLPNCVTYNALIDGHCH 320

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G+   AL + E M A G        KPN V+Y+ +++GLC+    + +K +  +M+   
Sbjct: 321 DGNFEQALTILEMMEATGP-------KPNEVSYSALLNGLCRHAKFELSKSILERMRMNG 373

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +    + Y ++I G C     NE+  LL +M+  GV PDVVTF+V+++  C+ GK+    
Sbjct: 374 MIVGCIAYTAMIDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVK 433

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++  M   G+ PN+  ++TL+  +C TG V  A +++V+M  +G
Sbjct: 434 EIICKMYKAGLAPNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIG 478



 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 151/299 (50%), Gaps = 7/299 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            +  F  ML  R  P  +++FN+L   L           L K++  +G  P + TYN ++
Sbjct: 152 VWLFFKEMLARRVCPD-VSTFNILINVLCVEGKLKKAGYLLKKMEESGYVPSVVTYNTVL 210

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +CK GR      ++ ++       DA  +  L+  LC  +R  +   L  K++     
Sbjct: 211 NWYCKKGRYKAALELIDQMGSKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMIS 270

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN ITY+++ING  + G    A  +F+EM+  N        PN VTY  +IDG C +G  
Sbjct: 271 PNEITYNSIINGFVKEGKIGAATRIFQEMSMLN------LLPNCVTYNALIDGHCHDGNF 324

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A  +   M+     P+ V+Y++L++G C    +  +  +L  M   G+    + +  +
Sbjct: 325 EQALTILEMMEATGPKPNEVSYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAM 384

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +D LC+NG ++E+ +LL+ M+  GV P+  TFS L++GFC  G++ + KE+   M   G
Sbjct: 385 IDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAG 443



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 30/329 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  I + M    P P  + S++ L   L +   ++   S+ +R+   G+      Y  +
Sbjct: 326 QALTILEMMEATGPKPNEV-SYSALLNGLCRHAKFELSKSILERMRMNGMIVGCIAYTAM 384

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  C+ G ++    +L ++L+    PD V F+ LI G C   +I     +  K+   G 
Sbjct: 385 IDGLCRNGLLNESVKLLDKMLKDGVVPDVVTFSVLINGFCRVGKIKNVKEIICKMYKAGL 444

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMAN------------------GNGKFGVV-- 248
            PN I Y+TLI   C+TG  + A  ++  M+                    +GK GV   
Sbjct: 445 APNSIIYTTLIYNYCKTGDVVEAFKVYVAMSRIGYDANCFICNVLVSSLCKDGKVGVAEY 504

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      PN++T+  II+G    G   KA  +F +M     +P   TY  L+   C
Sbjct: 505 FFHHMSKIGNVPNSITFDCIINGYGNSGNGLKAFSMFDEMIKAGHHPSHFTYGGLLKALC 564

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
            A  + EA  LL ++       D VT+N I+ E  K+G + +A  L + M+ R V P++ 
Sbjct: 565 RAGKFKEAKRLLDKLHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSY 624

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           T++ +  G    G++  A   + ++   G
Sbjct: 625 TYAIIFAGLIRRGKMVAALHFYGNLLGKG 653



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 132/296 (44%), Gaps = 22/296 (7%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGL------------FP----DLYTYNILINCFCKMGRVSH 160
           L + + Y+   S+ K L+  G+            +P    +   +++LI  + + G V  
Sbjct: 57  LVRARLYENAKSILKHLSQMGVGSKSVFGALMNTYPLCKSNPSVFDLLIRVYLREGMVGD 116

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
                  +    F P       L+  L  E ++      F ++ A    P+V T++ LIN
Sbjct: 117 ALETFRLMGIRGFNPSVYTCNMLLGKLVKERKVGAVWLFFKEMLARRVCPDVSTFNILIN 176

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC  G    A  L ++M       G V  P+ VTY T+++  CK+G    A EL  QM 
Sbjct: 177 VLCVEGKLKKAGYLLKKMEES----GYV--PSVVTYNTVLNWYCKKGRYKAALELIDQMG 230

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K I  D  TYN L+   C  N   +   LL +M  + + P+ +T+N I++   K GK+ 
Sbjct: 231 SKGIEADACTYNMLVDDLCKNNRSAKGYLLLKKMRKRMISPNEITYNSIINGFVKEGKIG 290

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A+R+ + M +  + PN  T++ L+DG C  G    A  +   ME+ G K    SY
Sbjct: 291 AATRIFQEMSMLNLLPNCVTYNALIDGHCHDGNFEQALTILEMMEATGPKPNEVSY 346



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/311 (27%), Positives = 138/311 (44%), Gaps = 41/311 (13%)

Query: 93   IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
            IF  M +     P L ++N+L    AK K+     +L+  +  TG+FPD  T + LI  F
Sbjct: 716  IFTMMWSGITISPSLATYNILLHGYAKKKNLSKCSNLYNIMMRTGIFPDKLTCHSLILGF 775

Query: 153  CKMGRVSHGFVVLGR----------------ILRSCFT-------------------PDA 177
            CK   +  G  +L +                I++ C T                   PD 
Sbjct: 776  CKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCETDEVGKAFDLVNIMNLFDIFPDM 835

Query: 178  VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
                S+I  L   S + E+  L  ++   GC P+   Y  L+N +CR GH   A  L +E
Sbjct: 836  TTHDSIISVLSRVSTVQESHLLLHEMLERGCIPDRRQYIALVNRMCRMGHIHGAFKLKDE 895

Query: 238  MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
            M       G+      V  + ++ GL K G V++AK +   M  K++ P + T+ +L+H 
Sbjct: 896  ME----ALGI--SSGDVAESALVRGLAKCGKVEEAKLVLDFMLRKSLIPTIATFTTLMHM 949

Query: 298  FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            FC      EA  L   M    V+ DV+ +NV++  LC +G +  A +L + +  RG+ PN
Sbjct: 950  FCRNESLVEALKLKDTMDFCDVKLDVIAYNVLISGLCADGDVASALKLYKEIKQRGLWPN 1009

Query: 358  TSTFSTLMDGF 368
             +T+  L+D  
Sbjct: 1010 MTTYCILIDAI 1020



 Score = 90.9 bits (224), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 132/293 (45%), Gaps = 6/293 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           L+  PS     ++N +     K+      ++LF  +    + PD YTY I+     + G+
Sbjct: 579 LHYIPSAVDTVTYNTILVETFKSGMLTDAVALFDEMVQRNVLPDSYTYAIIFAGLIRRGK 638

Query: 158 VSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +       G +L +   +P+ V +T+ + GL    +   A      ++  G   ++I  +
Sbjct: 639 MVAALHFYGNLLGKGAVSPEKVMYTTFVDGLFRAGQSKAALYFCEDMEKNGLCADLIATN 698

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            ++NG  R G    A ++F  M +G     +   P+  TY  ++ G  K+  + K   L+
Sbjct: 699 VILNGYSRMGKMAKAGDIFTMMWSG-----ITISPSLATYNILLHGYAKKKNLSKCSNLY 753

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M    I PD +T +SLI GFC +   +    LL +M+  GV  D  TFN+++ + C+ 
Sbjct: 754 NIMMRTGIFPDKLTCHSLILGFCKSAMLDVGLKLLKKMLLDGVAVDQCTFNMLIMKYCET 813

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            ++ +A  L+ +M L  + P+ +T  +++        V  +  L   M   GC
Sbjct: 814 DEVGKAFDLVNIMNLFDIFPDMTTHDSIISVLSRVSTVQESHLLLHEMLERGC 866


>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20090-like [Glycine max]
          Length = 642

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/301 (31%), Positives = 159/301 (52%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M  +  + P L +FN+L   L K         L   +   G  P+  TYN 
Sbjct: 222 DEAVSLLDEM-QVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNA 280

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C  G++     +L +++ +   P+ V F +LI G   + R  +   +   L+A G
Sbjct: 281 LVHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARG 340

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + N   YS+LI+GLC+ G    A+ L++EM  G G     C PNT+ Y+ +IDGLC+EG
Sbjct: 341 HRGNEYVYSSLISGLCKEGKFNQAMELWKEMV-GKG-----CGPNTIVYSALIDGLCREG 394

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A+    +MK+K   P+  TY+SL+ G+  A D ++A  +  EM +     + V ++
Sbjct: 395 KLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYS 454

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ LCK+GK  EA  + + M+ RG+  +   +S+++ GFC    V    +LF  M   
Sbjct: 455 ILINGLCKDGKFMEALMVWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQ 514

Query: 388 G 388
           G
Sbjct: 515 G 515



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/317 (29%), Positives = 161/317 (50%), Gaps = 11/317 (3%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL---NSTGLFP 140
           A  P +A  +F  M         + SFN +   + +   ++  L  +  +    S  + P
Sbjct: 109 AHLPEKAVDLFHRMWGEFQCKQTVKSFNSVLNVIVQEGLFNRALEFYNHVVASKSLNIHP 168

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           +  T+N++I   C++G V     V   I LR+C  PD   +++L+ GLC E RI EA +L
Sbjct: 169 NALTFNLVIKAMCRLGLVDKAIEVFREIPLRNC-APDNYTYSTLMHGLCKEERIDEAVSL 227

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +++  G  PN++ ++ LI+ LC+ G    A  L + M      F   C PN VTY  +
Sbjct: 228 LDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNM------FLKGCVPNEVTYNAL 281

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + GLC +G ++KA  L  QM      P+ VT+ +LI+GF      ++   +L+ +  +G 
Sbjct: 282 VHGLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEARGH 341

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + +   ++ ++  LCK GK ++A  L + M+ +G  PNT  +S L+DG C  G+++ A+ 
Sbjct: 342 RGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARG 401

Query: 380 LFVSMESMGCKHTVFSY 396
               M++ G     F+Y
Sbjct: 402 FLSEMKNKGYLPNSFTY 418



 Score =  154 bits (390), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           LN+ P+     +FNL+   + +    D  + +F+ +      PD YTY+ L++  CK  R
Sbjct: 164 LNIHPNA---LTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEER 220

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           +     +L  +      P+ VAF  LI  LC +  +  AA L   +   GC PN +TY+ 
Sbjct: 221 IDEAVSLLDEMQVEGTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNA 280

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L++GLC  G    A++L  +M +        C PN VT+ T+I+G   +G       + +
Sbjct: 281 LVHGLCLKGKLEKAVSLLNQMVSNK------CVPNDVTFGTLINGFVMQGRASDGTRVLV 334

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            ++ +    +   Y+SLI G C    +N+A  L  EM+ +G  P+ + ++ ++D LC+ G
Sbjct: 335 SLEARGHRGNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREG 394

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+DEA   L  M  +G  PN+ T+S+LM G+   G  + A  ++  M +  C H    Y
Sbjct: 395 KLDEARGFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCY 453



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 157/341 (46%), Gaps = 53/341 (15%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + + M++ +  P  +T   L+ G + + +  D    L   L + G   + Y Y+ L
Sbjct: 293 KAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVS-LEARGHRGNEYVYSSL 351

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G+ +    +   ++     P+ + +++LI GLC E ++ EA    +++K  G 
Sbjct: 352 ISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGLCREGKLDEARGFLSEMKNKGY 411

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC------------------- 249
            PN  TYS+L+ G    G +  A+ +++EMAN N     VC                   
Sbjct: 412 LPNSFTYSSLMRGYFEAGDSHKAILVWKEMANNNCIHNEVCYSILINGLCKDGKFMEALM 471

Query: 250 ----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KDKNINPDVVTYNSLIHG 297
                     K + V Y+++I G C    V++  +LF QM  +   + PDV+TYN L++ 
Sbjct: 472 VWKQMLSRGIKLDVVAYSSMIHGFCNANLVEQGLKLFNQMLCQGPVVQPDVITYNILLNA 531

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN------GK--MDE-------- 341
           FC       A  +L  M+DQG  PD +T ++ +  L +N      G+  +DE        
Sbjct: 532 FCIQKSIFRAIDILNIMLDQGCDPDFITCDIFLKTLRENMNPPQDGREFLDELVVRLVKR 591

Query: 342 -----ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
                AS+++E+M+ + + P  ST++ ++   C    V  A
Sbjct: 592 QRTIGASKIIEVMMHKFLLPKASTWAMVVQQVCKPKNVRKA 632


>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Brachypodium distachyon]
          Length = 587

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 90/300 (30%), Positives = 152/300 (50%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D ML  R   P + ++N+L     K + Y   + L   +   G  P   TYN++
Sbjct: 170 DALVLLDNML-YRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVI 228

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C+ G V +   +L  +     TP+ V + +++KGL    R  +   L  ++ +  C
Sbjct: 229 MDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENC 288

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+  T S +I+ LC+ G    A+ L E+M+  +      C  N VTY  ++ GLC++G 
Sbjct: 289 PPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHD------CTANIVTYNAVVSGLCEQGH 342

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A  L   M+     P++ TYN L+ G C A  W +A  L+ +M      PD++TFN 
Sbjct: 343 VDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNT 402

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           I+  LC+ G   +A  + + M  +G  PN+ T+S++++G   TG++  + EL   M S G
Sbjct: 403 IIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKG 462



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 81/283 (28%), Positives = 149/283 (52%), Gaps = 7/283 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + +++   L +   +   + L ++++      ++ TYN +++  C+ G V     
Sbjct: 289 PPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALY 348

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +      P+   +  L+KGLC   R  +A  L  K+    C P+++T++T+I  LC
Sbjct: 349 LLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLC 408

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G T+ A+ +F++M          C PN+VTY+++I+GL K G ++++ EL  +M  K 
Sbjct: 409 QKGLTMQAVEVFKQMPEKG------CCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSKG 462

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            NP++  Y+ L       +   EA  ++ ++ D G+ P  V +N I+  LC+NGK D+A 
Sbjct: 463 FNPEI-NYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQAI 521

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +L  M+  G  P+ ST+S L+ G    G +  A+EL  ++ S
Sbjct: 522 DILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELLSTLSS 564



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 78/253 (30%), Positives = 125/253 (49%), Gaps = 9/253 (3%)

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           TY+ L + +C++GR+     V+  +      P A A+  L+  LC   ++ +A  L   +
Sbjct: 122 TYSALADGYCRVGRLDEARRVVDGMP---VLPSAYAYNPLMHALCVRGQVRDALVLLDNM 178

Query: 204 KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGL 263
              GC P+V+TY+ L+   C+      A+ L + M          C P  VTY  I+DG+
Sbjct: 179 LYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRVEG------CTPTNVTYNVIMDGM 232

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
           C+EG VD A+EL   +      P+ V YN+++ G   A  W +   L+ EM  +   P  
Sbjct: 233 CREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENCPPSE 292

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            T +V++  LC+ G    A RLLE M       N  T++ ++ G C  G V+ A  L  +
Sbjct: 293 ATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSN 352

Query: 384 MESMGCKHTVFSY 396
           M++ GCK  +F+Y
Sbjct: 353 MQTDGCKPNIFTY 365



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/311 (29%), Positives = 143/311 (45%), Gaps = 14/311 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M    P  P   ++N L   L         L L   +   G  PD+ TYNI
Sbjct: 137 DEARRVVDGM----PVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNI 192

Query: 148 LINCFCKMGRVSHGFVVLGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           L+   CK GR     + L  ++R   C TP  V +  ++ G+C E  +  A  L   L +
Sbjct: 193 LLEAACK-GRGYRQAMELIDLMRVEGC-TPTNVTYNVIMDGMCREGDVDYARELLNSLPS 250

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           +GC PN + Y+T++ GL   G       L  EM + N      C P+  T + +I  LC+
Sbjct: 251 YGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSEN------CPPSEATLSVVISSLCQ 304

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG   +A  L  +M   +   ++VTYN+++ G C     + A  LL  M   G +P++ T
Sbjct: 305 EGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFT 364

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N+++  LC   + ++A  L+  M      P+  TF+T++   C  G    A E+F  M 
Sbjct: 365 YNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMP 424

Query: 386 SMGCKHTVFSY 396
             GC     +Y
Sbjct: 425 EKGCCPNSVTY 435



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 126/248 (50%), Gaps = 7/248 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N +   L +  H D  L L   + + G  P+++TYNIL+   C   R      ++ 
Sbjct: 327 IVTYNAVVSGLCEQGHVDGALYLLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMA 386

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++ ++   PD + F ++I  LC +   M+A  +F ++   GC PN +TYS++I GL +TG
Sbjct: 387 KMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTG 446

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               +L L  EM  G+  F        + Y  + + L +E  + +A ++  +++D  I+P
Sbjct: 447 KMEQSLELLNEM--GSKGFN-----PEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISP 499

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
             V YN+++ G C     ++A  +L  M+  G  PD  T+++++  L   G M EA  LL
Sbjct: 500 QAVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEARELL 559

Query: 347 ELMILRGV 354
             +  R V
Sbjct: 560 STLSSRDV 567



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 13/224 (5%)

Query: 167 RILRSCFTPDAVAFTS-LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
           R++ S   P  VA  + L++ LC   R  +AA +   ++A G     +TYS L +G CR 
Sbjct: 77  RVVESSLCPPDVALANRLVRDLCRRGRPADAARV---VEACGSAATAVTYSALADGYCRV 133

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  + +         G+   P+   Y  ++  LC  G V  A  L   M  +   
Sbjct: 134 GRLDEARRVVD---------GMPVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCA 184

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDVVTYN L+   C    + +A  L+  M  +G  P  VT+NVIMD +C+ G +D A  L
Sbjct: 185 PDVVTYNILLEAACKGRGYRQAMELIDLMRVEGCTPTNVTYNVIMDGMCREGDVDYAREL 244

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L  +   G  PNT  ++T++ G    GR    +EL   M S  C
Sbjct: 245 LNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEMFSENC 288



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PDV   N L+   C      +A   ++E    G     VT++ + D  C+ G++DEA R+
Sbjct: 86  PDVALANRLVRDLCRRGRPADA-ARVVEAC--GSAATAVTYSALADGYCRVGRLDEARRV 142

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ M    V P+   ++ LM   C+ G+V  A  L  +M   GC   V +Y
Sbjct: 143 VDGM---PVLPSAYAYNPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTY 190


>gi|125582652|gb|EAZ23583.1| hypothetical protein OsJ_07284 [Oryza sativa Japonica Group]
          Length = 667

 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 148/304 (48%), Gaps = 11/304 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M  +R     + S+  L   L +    D  + LF  ++     PD++ Y  L+   
Sbjct: 32  LFDKM-PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGL 86

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C   R   G ++L R+    + P   A+ +++   C E +  EA  +  ++   G  P V
Sbjct: 87  CNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCV 146

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +T + +IN  C+ G    AL + E M          CKPN  TY  ++ G C EG V KA
Sbjct: 147 VTCTAVINAYCKEGRMSDALRVLELMKLRG------CKPNVWTYNALVQGFCNEGKVHKA 200

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L  +M+   +NPD VTYN LI G C       A  LL  M   G+  D  T+N +++ 
Sbjct: 201 MTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINA 260

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK+G+ D+A  L + +  RG+ PN  TF++L++G C +G+ + A +    M S GC   
Sbjct: 261 LCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPD 320

Query: 393 VFSY 396
            ++Y
Sbjct: 321 TYTY 324



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 8/279 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPDA 177
           K       L + + +   G  P+++TYN L+  FC  G+V     +L + +R+C   PDA
Sbjct: 158 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNK-MRACGVNPDA 216

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V +  LI+G C +  I  A  L   ++  G   +  TY+ LIN LC+ G T  A +LF+ 
Sbjct: 217 VTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDS 276

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +           KPN VT+ ++I+GLCK G  D A +   +M      PD  TY+S I  
Sbjct: 277 LETRG------IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEH 330

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C      E    + EM+ + V+P  V + +++ +L K       +R    M+  G NP+
Sbjct: 331 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 390

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++T M  +C+ GR+N A+ + + M   G      +Y
Sbjct: 391 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAY 429



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/229 (33%), Positives = 118/229 (51%), Gaps = 10/229 (4%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++RS + PDA  F SLI G C  +++  A  LF K+   G   +V++Y+TLI GLC  G 
Sbjct: 1   MVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYATLIEGLCEAGR 60

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+ LF EM           +P+   Y  ++ GLC     ++   +  +MK+    P 
Sbjct: 61  IDEAVELFGEMD----------QPDMHMYAALVKGLCNAERGEEGLLMLRRMKELGWRPS 110

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
              Y +++   C      EA  +L EM ++G+ P VVT   +++  CK G+M +A R+LE
Sbjct: 111 TRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKEGRMSDALRVLE 170

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LM LRG  PN  T++ L+ GFC  G+V+ A  L   M + G      +Y
Sbjct: 171 LMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 219



 Score =  110 bits (276), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 158/346 (45%), Gaps = 20/346 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +   F++  CK  G          E       ML  +   P   ++ ++   L K +
Sbjct: 320 DTYTYSSFIEHLCKMKGS--------QEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKER 370

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
           +Y  V   +  + S+G  PD+ TY   +  +C  GR++    VL  + ++  T D +A+ 
Sbjct: 371 NYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 430

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE----- 236
           +L+ G  +  +   A ++  ++ +    PN  TY  L+  L R       L L       
Sbjct: 431 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 490

Query: 237 --EMANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
             E+ +  G F V+ K    PN+ TY++I++G  ++G  ++A  L   MK+ +I+ +   
Sbjct: 491 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 550

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y +L+  FC +  + +A  L+  M+  G  P ++++  ++  L   G+ D+A  +     
Sbjct: 551 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSR 610

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  +P+   +  ++DG    G  + ++E+ + +E M C+ +  +Y
Sbjct: 611 WKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 656



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 24/326 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD  L  R   P   +FN L   L K+   D      +++ S G  PD YTY+ 
Sbjct: 268 DQACSLFDS-LETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSS 326

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   CKM     G   +G +L+    P  V +T +I  L  E      A  + ++ + G
Sbjct: 327 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 386

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+T +   C  G    A N+  EM+    K GV    +T+ Y T++DG    G
Sbjct: 387 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMS----KNGVTV--DTMAYNTLMDGHASIG 440

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH-----------------GFCYANDWNEANCL 310
             D A  +  QM      P+  TY  L+                  G   A +  +   L
Sbjct: 441 QTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGL 500

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
              M      P+  T++ I++   ++G+ +EA+ L+ LM    ++ N   ++ L+  FC 
Sbjct: 501 FDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCK 560

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
           + R   A  L  SM   G    + SY
Sbjct: 561 SKRYLDAWVLVCSMIQHGFIPQLMSY 586



 Score = 74.3 bits (181), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 109/242 (45%), Gaps = 23/242 (9%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV---------- 158
           ++N L    A     D  +S+ K++ S    P+ +TY IL+    +M  V          
Sbjct: 428 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 487

Query: 159 -------SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
                  +  F +   + ++ F P++  ++S+++G   + R  EA +L + +K      N
Sbjct: 488 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 547

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
              Y+ L+   C++   + A  L   M     + G +  P  ++Y  ++ GL  EG  DK
Sbjct: 548 EDIYTALVTCFCKSKRYLDAWVLVCSMI----QHGFI--PQLMSYQHLLSGLICEGQTDK 601

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           AKE+F+  + K+ +PD + +  +I G       + +  ++I +     +P   T+ ++ +
Sbjct: 602 AKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 661

Query: 332 EL 333
           EL
Sbjct: 662 EL 663


>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g53330-like [Cucumis sativus]
          Length = 394

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 155/302 (51%), Gaps = 9/302 (2%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
           A  P+ AF +F+ + + R     + S N L   L K +  + +  +F  +++ G  PD  
Sbjct: 31  AHLPDRAFQVFERIPSFR-CKRTVKSVNSLLAALLKNRQLEKMTQVFVDISNYG-SPDAC 88

Query: 144 TYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL 203
           T+NILI+  C  G +   + V   + +    P+ V F +LI GL   S++ EA  L   +
Sbjct: 89  TFNILIHAACLCGDLDAVWGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDM 148

Query: 204 -KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
            K +  KPN   Y+TLI G C  G    A  L EEM   N K        +  Y+T+I  
Sbjct: 149 VKVYMIKPNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLV------SAVYSTLISA 202

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L K G  ++  ++  +M +    PD VTYN++I+G C  ND   A+ ++ EM+++G +PD
Sbjct: 203 LFKHGRKEEVSDILREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPD 262

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN I+  LCK GK+D+A  LLE M  RG  P+  ++  + DG C   ++  A  +  
Sbjct: 263 VFSFNTIIGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILD 322

Query: 383 SM 384
            M
Sbjct: 323 EM 324



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 123/261 (47%), Gaps = 11/261 (4%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A+     + +FD M      P  +T   L++G    +K  + +      +    + 
Sbjct: 101 GDLDAV-----WGVFDEMQKRGVKPNVVTFGTLIYGLSLNSKLKEALRLKEDMVKVYMIK 155

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+   Y  LI  FC +G ++  F +   ++ S     +  +++LI  L    R  E + +
Sbjct: 156 PNASIYTTLIKGFCGVGELNFAFKLKEEMVTSNVKLVSAVYSTLISALFKHGRKEEVSDI 215

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   GCKP+ +TY+ +ING C+      A  + +EM          CKP+  ++ TI
Sbjct: 216 LREMGENGCKPDTVTYNAIINGHCKENDLESAHRVMDEMVEKG------CKPDVFSFNTI 269

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I  LCKEG +DKA +L   M  +   PDV++Y  +  G C      EA  +L EM+ +G 
Sbjct: 270 IGWLCKEGKLDKAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGY 329

Query: 320 QPDVVTFNVIMDELCKNGKMD 340
            P   + N ++D LC+   M+
Sbjct: 330 VPRNESINKLVDRLCQECNME 350



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/138 (19%), Positives = 62/138 (44%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +     K    ++   +   +   G  PD++++N +I   CK G++     +
Sbjct: 226 PDTVTYNAIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLDKAMDL 285

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + R    PD +++  +  GLC   ++ EA ++  ++   G  P   + + L++ LC+
Sbjct: 286 LEDMPRRGCPPDVLSYRIIFDGLCEMMQLKEATSILDEMIFKGYVPRNESINKLVDRLCQ 345

Query: 225 TGHTIVALNLFEEMANGN 242
             +  +   +   +  GN
Sbjct: 346 ECNMELLWMILNSLGRGN 363


>gi|356499433|ref|XP_003518545.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g06920-like [Glycine max]
          Length = 905

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 157/310 (50%), Gaps = 10/310 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  I + M     + P LTS+N+L   L K    +  L +   +   GLFP++ T NI
Sbjct: 394 EEALRILEAM--KMDAAPNLTSYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNI 451

Query: 148 LINCFCKMGRVSHG-FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +I+  CK  R+     + LG   + C TPD+V F SLI GL    ++ +A  L+ K+   
Sbjct: 452 MIDRLCKAQRLDEACSIFLGLDHKVC-TPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDS 510

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN + Y++LI    + G       +++EM +        C P+ +     +D + K 
Sbjct: 511 GQTPNAVVYTSLIRNFFKCGRKEDGHKIYKEMMHRG------CSPDLMLLNNYMDCVFKA 564

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G ++K + LF ++K + + PDV +Y+ LIHG        +   L  EM +QG+  D   +
Sbjct: 565 GEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAY 624

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D  CK+GK+++A +LLE M  +G+ P   T+ +++DG     R++ A  LF   +S
Sbjct: 625 NIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 684

Query: 387 MGCKHTVFSY 396
                 V  Y
Sbjct: 685 KAVDLNVVVY 694



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 152/312 (48%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLL---FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYT 144
           N+A+ +++ ML+   +P  +   +L+   F C  K   +     ++K +   G  PDL  
Sbjct: 498 NDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRKEDGH----KIYKEMMHRGCSPDLML 553

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
            N  ++C  K G +  G  +   I     TPD  +++ LI GL       +   LF ++K
Sbjct: 554 LNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGLVKGGFSKDTYKLFYEMK 613

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G   +   Y+ +I+G C++G    A  L EEM           +P  VTY ++IDGL 
Sbjct: 614 EQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKG------LQPTVVTYGSVIDGLA 667

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K   +D+A  LF + K K ++ +VV Y+SLI GF      +EA  +L E+M +G+ P+  
Sbjct: 668 KIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNTY 727

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           T+N ++D L K  ++DEA    + M      PN  T+S +++G C   + N A   +  M
Sbjct: 728 TWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNGLCKVRKFNKAFVFWQEM 787

Query: 385 ESMGCKHTVFSY 396
           +  G K    +Y
Sbjct: 788 QKQGLKPNTITY 799



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 83/286 (29%), Positives = 138/286 (48%), Gaps = 6/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+++L   L K         LF  +   GL  D   YNI+I+ FCK G+V+  + +
Sbjct: 584 PDVRSYSILIHGLVKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQL 643

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P  V + S+I GL    R+ EA  LF + K+     NV+ YS+LI+G  +
Sbjct: 644 LEEMKTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSSLIDGFGK 703

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  + EE+            PNT T+  ++D L K   +D+A   F  MK+   
Sbjct: 704 VGRIDEAYLILEELMQKG------LTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKC 757

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTY+ +++G C    +N+A     EM  QG++P+ +T+  ++  L + G + EA  
Sbjct: 758 PPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKD 817

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           L E     G  P+++ ++ +++G     +   A  LF      GC+
Sbjct: 818 LFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCR 863



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 147/296 (49%), Gaps = 7/296 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I+  M++ R   P L   N    C+ K    +   +LF+ + + GL PD+ +Y+ILI+  
Sbjct: 538 IYKEMMH-RGCSPDLMLLNNYMDCVFKAGEIEKGRALFEEIKAQGLTPDVRSYSILIHGL 596

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            K G     + +   +       D  A+  +I G C   ++ +A  L  ++K  G +P V
Sbjct: 597 VKGGFSKDTYKLFYEMKEQGLHLDTRAYNIVIDGFCKSGKVNKAYQLLEEMKTKGLQPTV 656

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +TY ++I+GL +      A  LFEE  +           N V Y+++IDG  K G +D+A
Sbjct: 657 VTYGSVIDGLAKIDRLDEAYMLFEEAKSK------AVDLNVVVYSSLIDGFGKVGRIDEA 710

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +  ++  K + P+  T+N L+     A + +EA      M +    P+ VT++++++ 
Sbjct: 711 YLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLKCPPNEVTYSIMVNG 770

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LCK  K ++A    + M  +G+ PNT T++T++ G    G V  AK+LF   +S G
Sbjct: 771 LCKVRKFNKAFVFWQEMQKQGLKPNTITYTTMISGLARVGNVLEAKDLFERFKSSG 826



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 139/315 (44%), Gaps = 42/315 (13%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F  L    A+    D  LSL   + S     DL  YN+ I+CF K+G+V   +     + 
Sbjct: 240 FTTLICVFAREGRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELK 299

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-------------------------- 203
                PD V FTS+I  LC   R+ EA  LF +L                          
Sbjct: 300 SQGLVPDDVTFTSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFN 359

Query: 204 ---------KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
                    K  GC P+VI Y+ ++  L R G    AL + E M        +   PN  
Sbjct: 360 EAYSLLERQKRKGCIPSVIAYNCILTCLGRKGKVEEALRILEAMK-------MDAAPNLT 412

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           +Y  +ID LCK G ++ A ++   MK+  + P+++T N +I   C A   +EA  + + +
Sbjct: 413 SYNILIDMLCKAGELEAALKVQDSMKEAGLFPNIITVNIMIDRLCKAQRLDEACSIFLGL 472

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
             +   PD VTF  ++D L ++GK+++A  L E M+  G  PN   +++L+  F   GR 
Sbjct: 473 DHKVCTPDSVTFCSLIDGLGRHGKVNDAYMLYEKMLDSGQTPNAVVYTSLIRNFFKCGRK 532

Query: 375 NHAKELFVSMESMGC 389
               +++  M   GC
Sbjct: 533 EDGHKIYKEMMHRGC 547



 Score =  125 bits (314), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/256 (30%), Positives = 130/256 (50%), Gaps = 7/256 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A+ + + M   +   P + ++  +   LAK    D    LF+   S  +  ++  Y+ 
Sbjct: 638 NKAYQLLEEM-KTKGLQPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKAVDLNVVVYSS 696

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ F K+GR+   +++L  +++   TP+   +  L+  L     I EA   F  +K   
Sbjct: 697 LIDGFGKVGRIDEAYLILEELMQKGLTPNTYTWNCLLDALVKAEEIDEALVCFQNMKNLK 756

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C PN +TYS ++NGLC+      A   ++EM     K G+  KPNT+TYTT+I GL + G
Sbjct: 757 CPPNEVTYSIMVNGLCKVRKFNKAFVFWQEMQ----KQGL--KPNTITYTTMISGLARVG 810

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +AK+LF + K     PD   YN++I G   AN   +A  L  E   +G +    T  
Sbjct: 811 NVLEAKDLFERFKSSGGIPDSACYNAMIEGLSNANKAMDAYILFEETRLKGCRIYSKTCV 870

Query: 328 VIMDELCKNGKMDEAS 343
           V++D L K   +++A+
Sbjct: 871 VLLDALHKADCLEQAA 886



 Score =  118 bits (295), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 145/309 (46%), Gaps = 30/309 (9%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++N L   +A+T++ + +  + + ++  G  P   T   ++  F K  ++   F V+  +
Sbjct: 134 AYNALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETM 193

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +  F P   A+T+LI  L A         L  +++  G +  V  ++TLI    R G  
Sbjct: 194 RKFKFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQEIGYEVTVHLFTTLICVFAREGRV 253

Query: 229 IVALNLFEEMANGN---------------GKFGVV--------------CKPNTVTYTTI 259
             AL+L +EM + +               GK G V                P+ VT+T++
Sbjct: 254 DAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTFTSM 313

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I  LCK   VD+A ELF ++      P V  YN++I G+     +NEA  LL     +G 
Sbjct: 314 IGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKRKGC 373

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P V+ +N I+  L + GK++EA R+LE M +    PN ++++ L+D  C  G +  A +
Sbjct: 374 IPSVIAYNCILTCLGRKGKVEEALRILEAMKMDAA-PNLTSYNILIDMLCKAGELEAALK 432

Query: 380 LFVSMESMG 388
           +  SM+  G
Sbjct: 433 VQDSMKEAG 441



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/310 (24%), Positives = 124/310 (40%), Gaps = 17/310 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN-STGLFPDLYTYN 146
            +A   FD M    P P       L+ G + + K     L  F+ +   T        YN
Sbjct: 87  EDALNTFDEM----PQP------ELVVGVIRRLKDVRVALHYFRWVERKTKQLHSPEAYN 136

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            L+    +   + +   +L  +  + F P       ++       ++ EA  +   ++ F
Sbjct: 137 ALLMLMARTRNLEYLEQILEEMSMAGFGPSNNTCIEMVASFVKSRKLREAFGVIETMRKF 196

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             +P    Y+TLI  L         L L  +M        +  +     +TT+I    +E
Sbjct: 197 KFRPAYSAYTTLIGALSAAHEADPMLTLLRQMQE------IGYEVTVHLFTTLICVFARE 250

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G VD A  L  +MK  + N D+V YN  I  F      + A     E+  QG+ PD VTF
Sbjct: 251 GRVDAALSLLDEMKSNSFNADLVLYNVCIDCFGKVGKVDMAWKFFHELKSQGLVPDDVTF 310

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++  LCK  ++DEA  L E +      P    ++T++ G+   G+ N A  L    + 
Sbjct: 311 TSMIGVLCKAERVDEAVELFEELDSNKSVPCVYAYNTMIMGYGSVGKFNEAYSLLERQKR 370

Query: 387 MGCKHTVFSY 396
            GC  +V +Y
Sbjct: 371 KGCIPSVIAY 380


>gi|225433712|ref|XP_002266503.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Vitis vinifera]
          Length = 746

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/296 (31%), Positives = 148/296 (50%), Gaps = 13/296 (4%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L         +   + +FK +   G+ P + T+N L++   K GR S    +   +L
Sbjct: 168 FNSLIRSYGWAGLFQESIKVFKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEML 227

Query: 170 RS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +   TPD   F  LI+G C  S + E    F ++  F C P+V+TY+TL++GLCR G  
Sbjct: 228 DTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGLCRAGKV 287

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            +A N+ + M   +        PN VTYTT+I G C +  + +A  L  +M  + + P+ 
Sbjct: 288 KIAHNVVKGMVKKSPNLS----PNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNK 343

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +TYN+LI G C A   ++   +L  M+ D G  PD  T N ++   C  GK++EA  + E
Sbjct: 344 ITYNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFE 403

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF-------VSMESMGCKHTVFSY 396
            M    V P+++T+S L+   C  G    A+E F       + +  +GCK  V +Y
Sbjct: 404 KMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLVAAY 459



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 146/301 (48%), Gaps = 15/301 (4%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD ML+     P   +FN+L          D     FK ++     PD+ TYN L++  
Sbjct: 222 LFDEMLDTYGVTPDTYTFNILIRGFCMNSMVDEGFWFFKEMSRFKCDPDVVTYNTLVDGL 281

Query: 153 CKMGRVSHGF-VVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
           C+ G+V     VV G + +S   +P+ V +T+LI+G C +  + EA +L  ++ + G KP
Sbjct: 282 CRAGKVKIAHNVVKGMVKKSPNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKP 341

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N ITY+TLI GLC          + E M  G+G F     P+T T  T+I   C  G ++
Sbjct: 342 NKITYNTLIQGLCEAQKLDKIKEILEGMV-GDGGF----IPDTCTLNTLIKAHCTMGKLE 396

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM-------DQGVQPDV 323
           +A  +F +M +  + PD  TY+ L+   C   D+  A     E+        D G +P V
Sbjct: 397 EAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKEILLHDVGCKPLV 456

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +N + + LC NGK  +A R+   ++ RG   +  ++ TL+ G C  G      +L V 
Sbjct: 457 AAYNPMFEYLCSNGKTKKAERVFRQLMKRGTQ-DPPSYKTLILGHCREGTPEAGFDLLVL 515

Query: 384 M 384
           M
Sbjct: 516 M 516



 Score =  134 bits (337), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 143/296 (48%), Gaps = 15/296 (5%)

Query: 109 SFNLLFGCLAKTKHYDT----VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           S+ L+   L ++++ +     V S+ K+        D + +N LI  +   G       V
Sbjct: 129 SYFLMIEILGRSRNLNAARNFVFSIEKKSGGAVKLGDRF-FNSLIRSYGWAGLFQESIKV 187

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLC 223
              +     +P  V F SL+  +    R   A  LF + L  +G  P+  T++ LI G C
Sbjct: 188 FKTMKEIGVSPSVVTFNSLLSIVLKRGRTSMAKQLFDEMLDTYGVTPDTYTFNILIRGFC 247

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM--KD 281
                      F+EM+         C P+ VTY T++DGLC+ G V  A  +   M  K 
Sbjct: 248 MNSMVDEGFWFFKEMSRFK------CDPDVVTYNTLVDGLCRAGKVKIAHNVVKGMVKKS 301

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
            N++P+VVTY +LI G+C   D  EA  LL EM+ +G++P+ +T+N ++  LC+  K+D+
Sbjct: 302 PNLSPNVVTYTTLIRGYCMKQDMAEALSLLAEMVSRGLKPNKITYNTLIQGLCEAQKLDK 361

Query: 342 ASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +LE M+   G  P+T T +TL+   C  G++  A  +F  M  +  +    +Y
Sbjct: 362 IKEILEGMVGDGGFIPDTCTLNTLIKAHCTMGKLEEAFSVFEKMSELRVQPDSATY 417



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 75/277 (27%), Positives = 122/277 (44%), Gaps = 16/277 (5%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNI 147
           EA  +   M++    P  +T +N L   L + +  D +  + + +   G F PD  T N 
Sbjct: 326 EALSLLAEMVSRGLKPNKIT-YNTLIQGLCEAQKLDKIKEILEGMVGDGGFIPDTCTLNT 384

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-- 205
           LI   C MG++   F V  ++      PD+  ++ L++ LC       A   F +L    
Sbjct: 385 LIKAHCTMGKLEEAFSVFEKMSELRVQPDSATYSVLVRSLCQRGDFRRAEEFFDELAEKE 444

Query: 206 -----FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
                 GCKP V  Y+ +   LC  G T  A  +F ++     K G    P   +Y T+I
Sbjct: 445 ILLHDVGCKPLVAAYNPMFEYLCSNGKTKKAERVFRQLM----KRGTQDPP---SYKTLI 497

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G C+EG  +   +L + M  ++  PD  TY  +I G     D   A+  L +M+     
Sbjct: 498 LGHCREGTPEAGFDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHL 557

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           P    F+ I+  L + G   E++ L++LM+ R +  N
Sbjct: 558 PTTAIFHSILAALVEKGCAHESASLVKLMLERRIRQN 594



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 60/267 (22%), Positives = 112/267 (41%), Gaps = 33/267 (12%)

Query: 105 PPLTSFNLLFGCL---AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P + ++N +F  L    KTK  + V   F++L   G   D  +Y  LI   C+ G    G
Sbjct: 454 PLVAAYNPMFEYLCSNGKTKKAERV---FRQLMKRGT-QDPPSYKTLILGHCREGTPEAG 509

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
           F +L  +LR  F PDA  +  +I GL  +   + A     K+      P    + +++  
Sbjct: 510 FDLLVLMLRRDFVPDAETYGLMIDGLLKKGDPVLAHKSLEKMLKSSHLPTTAIFHSILAA 569

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV-----------TYTTI----------- 259
           L   G    + +L + M     +  +    +TV            + TI           
Sbjct: 570 LVEKGCAHESASLVKLMLERRIRQNIDLSTHTVRLLYKSGLQDKAFMTIGLLYENGYLVK 629

Query: 260 ----IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
               +  LC+   + +A+++ L   +K  + D+   +++I G C A+  +EA  L  E++
Sbjct: 630 MEELVSFLCQSRKLLEAQKMLLFSLEKRQSVDIDMCSTVISGLCKAHKVSEAFALYYELV 689

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEA 342
           ++G+Q  +     +   L   G+++EA
Sbjct: 690 EKGMQHRLTCQEDLRISLEAEGRLNEA 716


>gi|222422989|dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFV 163
           P + ++N L     K+   +    +FK + S  +  PD+ TY  +I+ +CK G++     
Sbjct: 239 PDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASS 298

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +LR    P  V F  L+ G      ++ A  +  K+ +FGC P+V+T+++LI+G C
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G       L+EEM N  G F     PN  TY+ +I+ LC E  + KA+EL  Q+  K+
Sbjct: 359 RVGQVSQGFRLWEEM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQLASKD 412

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P    YN +I GFC A   NEAN ++ EM  +  +PD +TF +++   C  G+M EA 
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +   M+  G +P+  T S+L+      G    A  L
Sbjct: 473 SIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 8/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD  L  + S     +FN+L   L      +  L L   ++  G  PD+ TYN L
Sbjct: 189 DAMKLFDEHLRFQ-SCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 247

Query: 149 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I  FCK   ++    +   +   S  +PD V +TS+I G C   ++ EA++L   +   G
Sbjct: 248 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 307

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  +T++ L++G  + G  + A    EE+      FG  C P+ VT+T++IDG C+ G
Sbjct: 308 IYPTNVTFNVLVDGYAKAGEMLTA----EEIRGKMISFG--CFPDVVTFTSLIDGYCRVG 361

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +   L+ +M  + + P+  TY+ LI+  C  N   +A  LL ++  + + P    +N
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK GK++EA+ ++E M  +   P+  TF+ L+ G C+ GR+  A  +F  M ++
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 388 GC 389
           GC
Sbjct: 482 GC 483



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 99/324 (30%), Positives = 154/324 (47%), Gaps = 41/324 (12%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-------------- 141
           + LN+R S     ++NLL   L K   +D    +F+ + S G+ P+              
Sbjct: 95  FKLNIRHS---FWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEK 151

Query: 142 ----------LYTY---------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
                     L ++         N L+N   K+ RV     +    LR     D   F  
Sbjct: 152 GKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNI 211

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+GLC   +  +A  L   +  FGC+P+++TY+TLI G C++     A  +F+++    
Sbjct: 212 LIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDV---- 267

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            K G VC P+ VTYT++I G CK G + +A  L   M    I P  VT+N L+ G+  A 
Sbjct: 268 -KSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +   A  +  +M+  G  PDVVTF  ++D  C+ G++ +  RL E M  RG+ PN  T+S
Sbjct: 327 EMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYS 386

Query: 363 TLMDGFCLTGRVNHAKELFVSMES 386
            L++  C   R+  A+EL   + S
Sbjct: 387 ILINALCNENRLLKARELLGQLAS 410



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 40/289 (13%)

Query: 142 LYTYNILINCFCKMG---------------RVSHGFVVLGRILRSCFTPDAVAFT----- 181
            +TYN+L    CK G                VS    +LG ++ S      + F      
Sbjct: 103 FWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLL 162

Query: 182 -------------SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                        SL+  L    R+ +A  LF +   F    +  T++ LI GLC  G  
Sbjct: 163 QSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKA 222

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPD 287
             AL L   M+      G  C+P+ VTY T+I G CK   ++KA E+F  +K  ++ +PD
Sbjct: 223 EKALELLGVMS------GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTY S+I G+C A    EA+ LL +M+  G+ P  VTFNV++D   K G+M  A  +  
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            MI  G  P+  TF++L+DG+C  G+V+    L+  M + G     F+Y
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 3/168 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ F +++ M N R   P   ++++L   L           L  +L S  + P  + YN 
Sbjct: 364 SQGFRLWEEM-NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP 422

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G+V+   V++  + +    PD + FT LI G C + R+ EA ++F K+ A G
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           C P+ IT S+L++ L + G    A +L  ++A   G+   V  P T T
Sbjct: 483 CSPDKITVSSLLSCLLKAGMAKEAYHL-NQIAR-KGQSNNVVPPETKT 528


>gi|359474464|ref|XP_003631475.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
           mitochondrial-like [Vitis vinifera]
 gi|297742067|emb|CBI33854.3| unnamed protein product [Vitis vinifera]
          Length = 767

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 9/298 (3%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           NM PS   L S++ LF  L K +  D  L +F+ L + G   D   Y+ILI  FC  G +
Sbjct: 390 NMEPS---LVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDL 446

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                ++  ++R+   PD   F SL+ G C     + A   F  +   G  P++ T + +
Sbjct: 447 DSAHKLMEEMVRNNLAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIATCNVI 506

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+  CR G    ALNL  EM    G F     PN  TY  +I+ LCKE   ++A ELF  
Sbjct: 507 IDAHCREGRVEEALNLMNEMQT-QGIF-----PNLFTYNAVINRLCKERKSERALELFPL 560

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  +N+ P VV Y++LI GF   ++  +A  L   M+  GV PD+V + ++++ LC   +
Sbjct: 561 MLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCHRSR 620

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M EA  L + M   G+ P+  ++++++ GFC  G +  A  LF  M   G   TV +Y
Sbjct: 621 MCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGHLPTVVTY 678



 Score =  158 bits (399), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 94/287 (32%), Positives = 138/287 (48%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N +   L K    D  L + + + S G+ PD+YTY+ILI+ FCK G V  G  ++  + 
Sbjct: 328 YNAIIHGLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMK 387

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            S   P  V+++SL  GLC +     +  +F  L A G K +   YS LI G C  G   
Sbjct: 388 YSNMEPSLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAYSILIKGFCMQGDLD 447

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L EEM   N        P+   + +++ G CK G    A E F  M +  I P + 
Sbjct: 448 SAHKLMEEMVRNN------LAPDPSNFESLVHGFCKMGLWVNALEFFNMMLEGGILPSIA 501

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T N +I   C      EA  L+ EM  QG+ P++ T+N +++ LCK  K + A  L  LM
Sbjct: 502 TCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALELFPLM 561

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + R V P+   +STL+DGF        A  L+  M  +G    + +Y
Sbjct: 562 LKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAY 608



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 83/260 (31%), Positives = 139/260 (53%), Gaps = 6/260 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N++     +    +  L+L   + + G+FP+L+TYN +IN  CK  +      +
Sbjct: 498 PSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALEL 557

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+    P  V +++LI G   +S   +A  L+ ++   G  P+++ Y+ LIN LC 
Sbjct: 558 FPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARMLKIGVTPDMVAYTILINILCH 617

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A NLF++M   NG       P+ ++YT++I G C+ G + KA  LF +M  +  
Sbjct: 618 RSRMCEAYNLFKKMTE-NG-----MTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRGH 671

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P VVTY SL+ G+C  N  + A+ L+ EM  +G+ PDVVT+NV++    + G +D+A  
Sbjct: 672 LPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKALE 731

Query: 345 LLELMILRGVNPNTSTFSTL 364
           +L  M   GV P+  T+  L
Sbjct: 732 MLNEMKENGVLPDHMTYMML 751



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/310 (28%), Positives = 152/310 (49%), Gaps = 12/310 (3%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD+     + A  + + M+    +P P ++F  L     K   +   L  F  +   G+
Sbjct: 443 QGDL-----DSAHKLMEEMVRNNLAPDP-SNFESLVHGFCKMGLWVNALEFFNMMLEGGI 496

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + T N++I+  C+ GRV     ++  +      P+   + ++I  LC E +   A  
Sbjct: 497 LPSIATCNVIIDAHCREGRVEEALNLMNEMQTQGIFPNLFTYNAVINRLCKERKSERALE 556

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF  +      P+V+ YSTLI+G  +  ++  AL L+  M     K GV   P+ V YT 
Sbjct: 557 LFPLMLKRNVLPSVVVYSTLIDGFAKQSNSQKALMLYARML----KIGVT--PDMVAYTI 610

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+ LC    + +A  LF +M +  + PD ++Y S+I GFC   D  +A  L  EM+ +G
Sbjct: 611 LINILCHRSRMCEAYNLFKKMTENGMTPDKISYTSVIAGFCRIGDMRKAWALFNEMLQRG 670

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             P VVT+  ++D  CK  ++D A  L++ M  +G+ P+  T++ L+      G ++ A 
Sbjct: 671 HLPTVVTYTSLVDGYCKMNRIDIADMLIDEMKRKGITPDVVTYNVLIAAHRRRGNLDKAL 730

Query: 379 ELFVSMESMG 388
           E+   M+  G
Sbjct: 731 EMLNEMKENG 740



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/278 (30%), Positives = 136/278 (48%), Gaps = 39/278 (14%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S N L  CLA+    + + SLF+ + STG  P+++TY I++N +CK              
Sbjct: 216 SCNFLLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCK-------------- 261

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRI--MEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
                            G   E+ I   +A  +  +++  G  P V+TYST I GLCR G
Sbjct: 262 -----------------GNFGEADIDTRQATEILEEMERNGESPTVVTYSTYIYGLCRVG 304

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           +   AL+    + + NG   V C      Y  II GLCK+G +D+A ++  +MK   I+P
Sbjct: 305 YVESALDFVRSLISANGLVNVYC------YNAIIHGLCKKGELDEALKVLEEMKSCGISP 358

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV TY+ LIHGFC   D  +   L+ EM    ++P +V+++ +   LCK    D +  + 
Sbjct: 359 DVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEPSLVSYSSLFHGLCKKRLSDISLDIF 418

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             +   G   + + +S L+ GFC+ G ++ A +L   M
Sbjct: 419 RDLGAAGYKYDQTAYSILIKGFCMQGDLDSAHKLMEEM 456



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 114/220 (51%), Gaps = 12/220 (5%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG------HTIVALNLFE 236
           L+K L   +R     +LF ++K+ G  PNV TY+ ++N  C+         T  A  + E
Sbjct: 220 LLKCLAEANRREFLRSLFEEMKSTGPPPNVFTYTIMMNFYCKGNFGEADIDTRQATEILE 279

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM   NG+      P  VTY+T I GLC+ G+V+ A +    +   N   +V  YN++IH
Sbjct: 280 EMER-NGE-----SPTVVTYSTYIYGLCRVGYVESALDFVRSLISANGLVNVYCYNAIIH 333

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   + +EA  +L EM   G+ PDV T+++++   CK G +++   L+E M    + P
Sbjct: 334 GLCKKGELDEALKVLEEMKSCGISPDVYTYSILIHGFCKQGDVEKGLYLIEEMKYSNMEP 393

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  ++S+L  G C     + + ++F  + + G K+   +Y
Sbjct: 394 SLVSYSSLFHGLCKKRLSDISLDIFRDLGAAGYKYDQTAY 433


>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 735

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/315 (32%), Positives = 160/315 (50%), Gaps = 14/315 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ +F+ ML +   P  + +FN L   L K  H      L  ++   G+ P+L+T+NI 
Sbjct: 199 EAYELFNKMLRLGIFPH-IATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257

Query: 149 INCFCKMG-------RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           I   C+ G       +V      L +++     PD   + ++I G     +I +A+ +  
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
             K  G  P+  TY +LI G+C+ G    AL LFEE A G G      KP+ V Y T+I 
Sbjct: 318 DAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEE-ALGKG-----LKPSIVLYNTLIK 371

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
           GL ++G V KA +L   M  + ++PD+ TYN +I+G C     ++AN LL   + +G  P
Sbjct: 372 GLSQQGLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLP 431

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           D+ TFN ++D  CK  KMD A  +L+ M   GV P+  T++++++G C   +     E F
Sbjct: 432 DIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETF 491

Query: 382 VSMESMGCKHTVFSY 396
             +   GC   + +Y
Sbjct: 492 KMIMEKGCLPNIITY 506



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 157/310 (50%), Gaps = 13/310 (4%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GDI     + A  +F+  L  +   P +  +N L   L++       L L   ++  G+ 
Sbjct: 342 GDI-----DHALALFEEALG-KGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMS 395

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++TYN++IN  CKMG VS    +L   +   + PD   F +LI G C   ++  A  +
Sbjct: 396 PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGI 455

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              + + G  P+VITY++++NGLC+       +  F+ +          C PN +TY  +
Sbjct: 456 LDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKG------CLPNIITYNIL 509

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-G 318
           I+ LCK   V +A +L  +++++ + PD V++ ++I GFC   D +EA  L   M  Q  
Sbjct: 510 IESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYR 569

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +   V T+N++++   +   MD A +L   M  +G +P++ T+  ++DGFC  G VN   
Sbjct: 570 ICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGY 629

Query: 379 ELFVSMESMG 388
           +  +    +G
Sbjct: 630 DFLLKEIEIG 639



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 96/292 (32%), Positives = 149/292 (51%), Gaps = 15/292 (5%)

Query: 105 PPLTSFNLLFGCL--------AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           P L +FN+    L        A +K  +    L K +N  GL PD +TYN +I  + K+G
Sbjct: 249 PNLFTFNIFIQGLCRKGVLEGANSKVVEAENYLHKMVNK-GLEPDDFTYNTIIYGYSKVG 307

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           ++     +L       F PD   + SLI G+C +  I  A ALF +    G KP+++ Y+
Sbjct: 308 KIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYN 367

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLI GL + G  + AL L  +M+    K G+   P+  TY  +I+GLCK G V  A  L 
Sbjct: 368 TLIKGLSQQGLVLKALQLMNDMS----KEGM--SPDIWTYNLVINGLCKMGCVSDANNLL 421

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
                K   PD+ T+N+LI G+C     + A  +L  M   GV PDV+T+N I++ LCK 
Sbjct: 422 NAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKA 481

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            K ++     ++++ +G  PN  T++ L++  C   +V  A +L   + + G
Sbjct: 482 AKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEALDLLEEIRNRG 533



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 86/274 (31%), Positives = 143/274 (52%), Gaps = 7/274 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++NL+   L K        +L     + G  PD++T+N LI+ +CK  ++ +   +
Sbjct: 396 PDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGI 455

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +     TPD + + S++ GLC  ++  +    F  +   GC PN+ITY+ LI  LC+
Sbjct: 456 LDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCK 515

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-N 283
                 AL+L EE+ N     G++  P+ V++ T+I G C  G +D+A +LF +M+ +  
Sbjct: 516 ARKVTEALDLLEEIRNR----GLI--PDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYR 569

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I   V TYN +I+ F    D + A  L  EM D+G  PD  T+ V++D  CK G ++   
Sbjct: 570 ICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKVGNVNSGY 629

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
             L   I  G  P+ +TF  +++  C+  RV+ A
Sbjct: 630 DFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEA 663



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 99/380 (26%), Positives = 165/380 (43%), Gaps = 72/380 (18%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  +F+ M +     P + S+N +   L +  +++    ++ R+   G+ PD+ T+ I
Sbjct: 93  QEAVDVFERM-DFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPDVCTFTI 151

Query: 148 LINCFCKMGR-------------------------VSHGFV----------VLGRILRSC 172
            I  FC+  R                         V  GF           +  ++LR  
Sbjct: 152 RIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFYEENYQVEAYELFNKMLRLG 211

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG------ 226
             P    F  L+  LC +  + E   L  K+   G  PN+ T++  I GLCR G      
Sbjct: 212 IFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQGLCRKGVLEGAN 271

Query: 227 -HTIVALNLFEEMAN---------------GNGKFGVVCK--------------PNTVTY 256
              + A N   +M N               G  K G +                P+  TY
Sbjct: 272 SKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKGFVPDEFTY 331

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            ++I G+C++G +D A  LF +   K + P +V YN+LI G        +A  L+ +M  
Sbjct: 332 CSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSK 391

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G+ PD+ T+N++++ LCK G + +A+ LL   I +G  P+  TF+TL+DG+C   ++++
Sbjct: 392 EGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDN 451

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A  +  SM S G    V +Y
Sbjct: 452 AIGILDSMWSHGVTPDVITY 471



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 150/330 (45%), Gaps = 31/330 (9%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+N    P   T   +++G  +K         + K     G  PD +TY  LI   C+ G
Sbjct: 284 MVNKGLEPDDFTYNTIIYG-YSKVGKIQDASRILKDAKFKGFVPDEFTYCSLIIGVCQDG 342

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            + H   +    L     P  V + +LIKGL  +  +++A  L   +   G  P++ TY+
Sbjct: 343 DIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402

Query: 217 TLINGLCRTGHTIVALNL---------------FEEMANG-------NGKFGVV------ 248
            +INGLC+ G    A NL               F  + +G       +   G++      
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSMWSH 462

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+ +TY +I++GLCK    +   E F  + +K   P+++TYN LI   C A    EA
Sbjct: 463 GVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTEA 522

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMD 366
             LL E+ ++G+ PD V+F  ++   C NG +DEA +L   M  +  +    +T++ +++
Sbjct: 523 LDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQYRICHTVATYNIMIN 582

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            F     ++ A++LF  M   GC    ++Y
Sbjct: 583 AFSEKLDMDMAQKLFHEMGDKGCDPDSYTY 612



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 118/252 (46%), Gaps = 13/252 (5%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + G+V     V  R+      P   ++ +++  L       +A  ++ ++K  G  P+
Sbjct: 86  YGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRMKHEGIAPD 145

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V T++  I   CRT   + AL L   M +        C+ N V Y T+I G  +E +  +
Sbjct: 146 VCTFTIRIKSFCRTKRPLAALRLLNNMPSQG------CELNAVVYCTVISGFYEENYQVE 199

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A ELF +M    I P + T+N L+H  C      E   LL +++  GV P++ TFN+ + 
Sbjct: 200 AYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIFIQ 259

Query: 332 ELCKNG-------KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            LC+ G       K+ EA   L  M+ +G+ P+  T++T++ G+   G++  A  +    
Sbjct: 260 GLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDA 319

Query: 385 ESMGCKHTVFSY 396
           +  G     F+Y
Sbjct: 320 KFKGFVPDEFTY 331



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 112/239 (46%), Gaps = 8/239 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  I D M +   +P  +T +N +   L K    + V+  FK +   G  P++ TYNI
Sbjct: 450 DNAIGILDSMWSHGVTPDVIT-YNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNI 508

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           LI   CK  +V+    +L  I      PD V+F ++I G C    + EA  LF ++ + +
Sbjct: 509 LIESLCKARKVTEALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQQY 568

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
                V TY+ +IN         +A  LF EM +        C P++ TY  +IDG CK 
Sbjct: 569 RICHTVATYNIMINAFSEKLDMDMAQKLFHEMGDKG------CDPDSYTYRVMIDGFCKV 622

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           G V+   +  L+  +    P + T+  +I+  C  +  +EA  ++  M+  GV P+ V 
Sbjct: 623 GNVNSGYDFLLKEIEIGFVPSLTTFGRVINCLCVQHRVHEAVGIVHLMVRTGVVPEAVV 681



 Score = 88.6 bits (218), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 96/208 (46%), Gaps = 6/208 (2%)

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
            + S ++    + ++ EA  +F ++  + C+P++ +Y+ ++N L   G+   A  ++  M
Sbjct: 78  VYVSAMRNYGRKGKVQEAVDVFERMDFYNCEPSIFSYNAIMNILVEYGYFNQAHKVYLRM 137

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
            +          P+  T+T  I   C+      A  L   M  +    + V Y ++I GF
Sbjct: 138 KHEG------IAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGF 191

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
              N   EA  L  +M+  G+ P + TFN +M  LCK G + E  +LL  ++  GV PN 
Sbjct: 192 YEENYQVEAYELFNKMLRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNL 251

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMES 386
            TF+  + G C  G +  A    V  E+
Sbjct: 252 FTFNIFIQGLCRKGVLEGANSKVVEAEN 279


>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
           chloroplastic [Vitis vinifera]
          Length = 1022

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L + N L   L KT +    + L K++   G   D  TYN LI+  CK G+V  GF + G
Sbjct: 558 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 617

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++    PD   +  LI G+C   ++ EA  L+ + K+    PNV TY  +I+G C+  
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 677

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                  LF E+   N +       N+V Y T+I   C+ G   +A +L   M+ K I P
Sbjct: 678 KIEEGEKLFTELLTQNLEL------NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 731

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
              TY+SLIHG C      +A CL+ EM  +G+ P+VV +  ++   CK G+MD+   +L
Sbjct: 732 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 791

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M    ++PN  T++ ++DG+  +G +  A +L   M   G      +Y
Sbjct: 792 QEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 841



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++++L   L K + ++   S+ K     G  P+   YN LI+ +CKMG +     + G
Sbjct: 383 LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRG 442

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++     P++V   S+I+G C   ++ +A  +  ++ + G   N   ++T+I+ LC   
Sbjct: 443 DMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS 502

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL    EM   N       +PN    TT++ GLCKEG    A EL+ ++ +K    
Sbjct: 503 RFESALRFLREMLLRN------MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA 556

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           ++VT N+LIHG C   +  EA  LL +M+++G   D +T+N ++   CK GK++E  +L 
Sbjct: 557 NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLR 616

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M+ +G+ P+T T++ L+ G C  G+++ A  L+   +S      V++Y
Sbjct: 617 GEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTY 666



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F ++ N +   P + +   L   L K    +    +F+ +   G+ PD+Y ++  I
Sbjct: 263 AIGVFRFLAN-KGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAI 320

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N FCK G+V     +   + +   +P+ V + +LI GLC    + EA     K+   G  
Sbjct: 321 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 380

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
             +ITYS LINGL +      A ++ +E             PN V Y T+IDG CK G +
Sbjct: 381 ATLITYSVLINGLMKLEKFNEANSVLKETLEKG------FTPNEVVYNTLIDGYCKMGNL 434

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A  +   M  K INP+ VT NS+I GFC      +A C+L EM+ +G   +   F  I
Sbjct: 435 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTI 494

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  LC N + + A R L  M+LR + PN    +TL+ G C  G+ + A EL+  +   G
Sbjct: 495 IHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 553



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 153/308 (49%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A CI + ML+   S  P  +F  +   L     +++ L   + +    + P+      L
Sbjct: 471 QAECILEEMLSRGFSINP-GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTL 529

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   CK G+ S    +  R+L   F  + V   +LI GLC    + EA  L  K+   G 
Sbjct: 530 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 589

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + ITY+TLI+G C+ G       L  EM     K G+  +P+T TY  +I G+C+ G 
Sbjct: 590 VLDKITYNTLISGCCKEGKVEEGFKLRGEMV----KQGI--EPDTFTYNLLIHGMCRIGK 643

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  L+ + K +++ P+V TY  +I G+C A+   E   L  E++ Q ++ + V +N 
Sbjct: 644 LDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNT 703

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C+NG   EA +L + M  +G+ P T+T+S+L+ G C  GR+  AK L   M   G
Sbjct: 704 LIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 763

Query: 389 CKHTVFSY 396
               V  Y
Sbjct: 764 LLPNVVCY 771



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 158/321 (49%), Gaps = 27/321 (8%)

Query: 49  TAKLKESLRLTVK--------DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           T  ++E++RL  K        D+ +    +   CK   +G +      E F +   M+  
Sbjct: 571 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK---EGKV-----EEGFKLRGEMVKQ 622

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
              P   T +NLL   + +    D  ++L+    S  L P++YTY ++I+ +CK  ++  
Sbjct: 623 GIEPDTFT-YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 681

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +   +L      ++V + +LI+  C     +EA  L   +++ G  P   TYS+LI+
Sbjct: 682 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 741

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G+C  G    A  L +EM     K G++  PN V YT +I G CK G +DK   +  +M 
Sbjct: 742 GMCNIGRMEDAKCLIDEMR----KEGLL--PNVVCYTALIGGYCKLGQMDKVVNVLQEMS 795

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +I+P+ +TY  +I G+  + D   A  LL EM+ +G+ PD VT+NV+ +  CK GK++
Sbjct: 796 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 855

Query: 341 EASRLLELMILRGVNPNTSTF 361
           E   L E     GV  N+  F
Sbjct: 856 EGKLLAE----DGVGFNSPLF 872



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 43/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +++ +F+ M   +   P +  F+       K    +  + LF  +   G+ P++ TYN L
Sbjct: 297 KSYWVFETM--RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNL 354

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G +   F    ++++       + ++ LI GL    +  EA ++  +    G 
Sbjct: 355 IHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF 414

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN + Y+TLI+G C+ G+   AL +  +M +          PN+VT  +II G CK G 
Sbjct: 415 TPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKG------INPNSVTLNSIIQGFCKIGQ 468

Query: 269 VDKAKELFLQMKDK--NINPDVVT---------------------------------YNS 293
           +++A+ +  +M  +  +INP   T                                   +
Sbjct: 469 MEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTT 528

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+ G C     ++A  L   ++++G   ++VT N ++  LCK G M EA RLL+ M+ RG
Sbjct: 529 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 588

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +  T++TL+ G C  G+V    +L   M   G +   F+Y
Sbjct: 589 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY 631



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  + +K + P V T   L+     AN+  E +  + E M QGV PDV  F+  ++  C
Sbjct: 266 VFRFLANKGVFPTVKTCTFLLSSLVKANEL-EKSYWVFETMRQGVSPDVYLFSTAINAFC 324

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K GK+++A +L   M   GV+PN  T++ L+ G C  G ++ A      M   G   T+ 
Sbjct: 325 KGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLI 384

Query: 395 SY 396
           +Y
Sbjct: 385 TY 386


>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
          Length = 1096

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 153/308 (49%), Gaps = 8/308 (2%)

Query: 83  TAITPNEAFCIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFP 140
           + +   E   ++ ++  M  R   P + +FN+L   L     ++    L +++  +G  P
Sbjct: 167 SVVKSGEDVSVWSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAP 226

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            + TYN +++ +CK GR      +L  +       D   +  LI  LC  +RI +   L 
Sbjct: 227 TIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLL 286

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             ++     PN +TY+TLING    G  ++A  L  EM +    FG+   PN VT+  +I
Sbjct: 287 RDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLS----FGL--SPNHVTFNALI 340

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG   EG   +A ++F  M+ K + P  V+Y  L+ G C   +++ A    + M   GV 
Sbjct: 341 DGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVC 400

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
              +T+  ++D LCKNG +DEA  LL  M   G++P+  T+S L++GFC  GR   AKE+
Sbjct: 401 VGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEI 460

Query: 381 FVSMESMG 388
              +  +G
Sbjct: 461 VCRIYRVG 468



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 93/314 (29%), Positives = 159/314 (50%), Gaps = 29/314 (9%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P + ++N +     K   +   + L   + S G+  D+ TYN+LI+  C+  R++ G++
Sbjct: 225 APTIVTYNTVLHWYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYL 284

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  + +    P+ V + +LI G   E +++ A+ L  ++ +FG  PN +T++ LI+G  
Sbjct: 285 LLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHI 344

Query: 224 RTGHTIVALNLFEEM-ANG----NGKFGVV----CK--------------------PNTV 254
             G+   AL +F  M A G       +GV+    CK                       +
Sbjct: 345 SEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRI 404

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           TYT +IDGLCK GF+D+A  L  +M    I+PD+VTY++LI+GFC    +  A  ++  +
Sbjct: 405 TYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRI 464

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
              G+ P+ + ++ ++   C+ G + EA R+ E MIL G   +  TF+ L+   C  G+V
Sbjct: 465 YRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKV 524

Query: 375 NHAKELFVSMESMG 388
             A+E    M S G
Sbjct: 525 AEAEEFMRCMTSDG 538



 Score =  134 bits (336), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 149/301 (49%), Gaps = 8/301 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M  +   P   T  +LL G L K  H        K L++     D   YN L
Sbjct: 561 KAFSVFDEMTKVGHHPTFFTYGSLLKG-LCKGGHLREAEKFLKSLHAVPAAVDTVMYNTL 619

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG- 207
           +   CK G ++    + G +++    PD+  +TSLI GLC + + + A     + +A G 
Sbjct: 620 LTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKGKTVIAILFAKEAEARGN 679

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN + Y+  ++G+ + G     +   E+M N      +   P+ VT   +IDG  + G
Sbjct: 680 VLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDN------LGHTPDIVTTNAMIDGYSRMG 733

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++K  +L  +M ++N  P++ TYN L+HG+    D + +  L   ++  G+ PD +T +
Sbjct: 734 KIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCH 793

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  +C++  ++   ++L+  I RGV  +  TF+ L+   C  G +N A +L   M S+
Sbjct: 794 SLVLGICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSL 853

Query: 388 G 388
           G
Sbjct: 854 G 854



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 141/307 (45%), Gaps = 9/307 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G I+     EA  +F YM+  +   P   S+ +L   L K   +D     + R+   G+
Sbjct: 341 DGHISEGNFKEALKMF-YMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFYMRMKRNGV 399

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
                TY  +I+  CK G +    V+L  + +    PD V +++LI G C   R   A  
Sbjct: 400 CVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDPDIVTYSALINGFCKVGRFKTAKE 459

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYT 257
           +  ++   G  PN I YSTLI   CR G    A+ ++E M   G+ +       +  T+ 
Sbjct: 460 IVCRIYRVGLSPNGIIYSTLIYNCCRMGCLKEAIRIYEAMILEGHTR-------DHFTFN 512

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            ++  LCK G V +A+E    M    I P+ V+++ LI+G+  + +  +A  +  EM   
Sbjct: 513 VLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLINGYGNSGEGLKAFSVFDEMTKV 572

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P   T+  ++  LCK G + EA + L+ +       +T  ++TL+   C +G +  A
Sbjct: 573 GHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSGNLAKA 632

Query: 378 KELFVSM 384
             LF  M
Sbjct: 633 VSLFGEM 639



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 83/296 (28%), Positives = 135/296 (45%), Gaps = 22/296 (7%)

Query: 117 LAKTKHYDTVLSLFKRLN-----STGLFPDLYT-----------YNILINCFCKMGRVSH 160
           L + + YD    + K L+     S+ +F  L T           Y+ILI  + + G +  
Sbjct: 82  LVRARMYDPARHILKELSLMSGKSSFVFGALMTTYRLCNSNPSVYDILIRVYLREGMIQD 141

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   +    F P      +++  +      +   +   ++      P+V T++ LIN
Sbjct: 142 SLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKRKICPDVATFNILIN 201

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC  G    +  L ++M     K G    P  VTY T++   CK+G    A EL   MK
Sbjct: 202 VLCAEGSFEKSSYLMQKME----KSGYA--PTIVTYNTVLHWYCKKGRFKAAIELLDHMK 255

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K ++ DV TYN LIH  C +N   +   LL +M  + + P+ VT+N +++     GK+ 
Sbjct: 256 SKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVL 315

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            AS+LL  M+  G++PN  TF+ L+DG    G    A ++F  ME+ G   +  SY
Sbjct: 316 IASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSY 371



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/297 (25%), Positives = 141/297 (47%), Gaps = 11/297 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           + + ML+   SP  +T FN L        ++   L +F  + + GL P   +Y +L++  
Sbjct: 320 LLNEMLSFGLSPNHVT-FNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGL 378

Query: 153 CKMGR--VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
           CK     ++ GF +  R+ R+      + +T +I GLC    + EA  L  ++   G  P
Sbjct: 379 CKNAEFDLARGFYM--RMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLNEMSKDGIDP 436

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           +++TYS LING C+ G    A  +   +      + V   PN + Y+T+I   C+ G + 
Sbjct: 437 DIVTYSALINGFCKVGRFKTAKEIVCRI------YRVGLSPNGIIYSTLIYNCCRMGCLK 490

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           +A  ++  M  +    D  T+N L+   C A    EA   +  M   G+ P+ V+F+ ++
Sbjct: 491 EAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFDCLI 550

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +    +G+  +A  + + M   G +P   T+ +L+ G C  G +  A++   S+ ++
Sbjct: 551 NGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV 607



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 81/295 (27%), Positives = 138/295 (46%), Gaps = 12/295 (4%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + + N +    ++    +    L   + +    P+L TYNIL++ + K   VS  F++
Sbjct: 717  PDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLL 776

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP---NVITYSTLING 221
               I+ +   PD +   SL+ G+C ES ++E       LKAF C+    +  T++ LI+ 
Sbjct: 777  YRSIILNGILPDKLTCHSLVLGIC-ESNMLEIG--LKILKAFICRGVEVDRYTFNMLISK 833

Query: 222  LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             C  G    A +L + M +     G+    +T     ++  L +     +++ +  +M  
Sbjct: 834  CCANGEINWAFDLVKVMTS----LGISLDKDTCD--AMVSVLNRNHRFQESRMVLHEMSK 887

Query: 282  KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
            + I+P+   Y  LI+G C   D   A  +  EM+   + P  V  + ++  L K GK DE
Sbjct: 888  QGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPPNVAESAMVRALAKCGKADE 947

Query: 342  ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            A+ LL  M+   + P  ++F+TLM   C  G V  A EL V M + G K  + SY
Sbjct: 948  ATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSY 1002



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 73/265 (27%), Positives = 122/265 (46%), Gaps = 7/265 (2%)

Query: 104  PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P  LT  +L+ G + ++   +  L + K     G+  D YT+N+LI+  C  G ++  F 
Sbjct: 787  PDKLTCHSLVLG-ICESNMLEIGLKILKAFICRGVEVDRYTFNMLISKCCANGEINWAFD 845

Query: 164  VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            ++  +     + D     +++  L    R  E+  +  ++   G  P    Y  LINGLC
Sbjct: 846  LVKVMTSLGISLDKDTCDAMVSVLNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLC 905

Query: 224  RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            R G    A  + EEM         +C PN V  + ++  L K G  D+A  L   M    
Sbjct: 906  RVGDIKTAFVVKEEMIAHK-----ICPPN-VAESAMVRALAKCGKADEATLLLRFMLKMK 959

Query: 284  INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            + P + ++ +L+H  C   +  EA  L + M + G++ D+V++NV++  LC  G M  A 
Sbjct: 960  LVPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAF 1019

Query: 344  RLLELMILRGVNPNTSTFSTLMDGF 368
             L E M   G   N +T+  L+ G 
Sbjct: 1020 ELYEEMKGDGFLANATTYKALIRGL 1044



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 124/284 (43%), Gaps = 6/284 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P LT++N+L    +K K   T   L++ +   G+ PD  T + L+   C+   +  G  +
Sbjct: 752  PNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGILPDKLTCHSLVLGICESNMLEIGLKI 811

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L   +      D   F  LI   CA   I  A  L   + + G   +  T   +++ L R
Sbjct: 812  LKAFICRGVEVDRYTFNMLISKCCANGEINWAFDLVKVMTSLGISLDKDTCDAMVSVLNR 871

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  +  +  EM+    K G+   P +  Y  +I+GLC+ G +  A  +  +M    I
Sbjct: 872  NHRFQESRMVLHEMS----KQGI--SPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKI 925

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             P  V  ++++         +EA  LL  M+   + P + +F  +M   CKNG + EA  
Sbjct: 926  CPPNVAESAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLMHLCCKNGNVIEALE 985

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L  +M   G+  +  +++ L+ G C  G +  A EL+  M+  G
Sbjct: 986  LRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDG 1029



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 3/134 (2%)

Query: 90   AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            AF + + M+  +  PP +   + +   LAK    D    L + +    L P + ++  L+
Sbjct: 913  AFVVKEEMIAHKICPPNVAE-SAMVRALAKCGKADEATLLLRFMLKMKLVPTIASFTTLM 971

Query: 150  NCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            +  CK G V    + L  ++ +C    D V++  LI GLCA+  +  A  L+ ++K  G 
Sbjct: 972  HLCCKNGNVIEA-LELRVVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGF 1030

Query: 209  KPNVITYSTLINGL 222
              N  TY  LI GL
Sbjct: 1031 LANATTYKALIRGL 1044



 Score = 47.0 bits (110), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 52/116 (44%), Gaps = 1/116 (0%)

Query: 87   PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
             +EA  +  +ML M+   P + SF  L     K  +    L L   +++ GL  DL +YN
Sbjct: 945  ADEATLLLRFMLKMKL-VPTIASFTTLMHLCCKNGNVIEALELRVVMSNCGLKLDLVSYN 1003

Query: 147  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            +LI   C  G ++  F +   +    F  +A  + +LI+GL A       A +  K
Sbjct: 1004 VLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGLLARETAFSGADIILK 1059


>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
          Length = 826

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 92/290 (31%), Positives = 145/290 (50%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L + N L   L KT +    + L K++   G   D  TYN LI+  CK G+V  GF + G
Sbjct: 491 LVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLRG 550

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +++    PD   +  LI G+C   ++ EA  L+ + K+    PNV TY  +I+G C+  
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                  LF E+   N +       N+V Y T+I   C+ G   +A +L   M+ K I P
Sbjct: 611 KIEEGEKLFTELLTQNLEL------NSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPP 664

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
              TY+SLIHG C      +A CL+ EM  +G+ P+VV +  ++   CK G+MD+   +L
Sbjct: 665 TTATYSSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVL 724

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M    ++PN  T++ ++DG+  +G +  A +L   M   G      +Y
Sbjct: 725 QEMSSYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTY 774



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 166/328 (50%), Gaps = 23/328 (7%)

Query: 49  TAKLKESLRLTVK--------DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNM 100
           T  ++E++RL  K        D+ +    +   CK   +G +      E F +   M+  
Sbjct: 504 TGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCK---EGKV-----EEGFKLRGEMVKQ 555

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
              P   T +NLL   + +    D  ++L+    S  L P++YTY ++I+ +CK  ++  
Sbjct: 556 GIEPDTFT-YNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEE 614

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
           G  +   +L      ++V + +LI+  C     +EA  L   +++ G  P   TYS+LI+
Sbjct: 615 GEKLFTELLTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIH 674

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G+C  G    A  L +EM     K G++  PN V YT +I G CK G +DK   +  +M 
Sbjct: 675 GMCNIGRMEDAKCLIDEMR----KEGLL--PNVVCYTALIGGYCKLGQMDKVVNVLQEMS 728

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
             +I+P+ +TY  +I G+  + D   A  LL EM+ +G+ PD VT+NV+ +  CK GK++
Sbjct: 729 SYDIHPNKITYTVMIDGYSKSGDMKTAAKLLHEMVGKGIVPDTVTYNVLTNGFCKEGKIE 788

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGF 368
           E  ++ + M   G+  +  T++TL+ G+
Sbjct: 789 EGFKICDYMSQEGLPLDEITYTTLVHGW 816



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 152/290 (52%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++++L   L K + ++   S+ K     G  P+   YN LI+ +CKMG +     + G
Sbjct: 316 LITYSVLINGLMKLEKFNEANSVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIRG 375

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++     P++V   S+I+G C   ++ +A  +  ++ + G   N   ++T+I+ LC   
Sbjct: 376 DMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTIIHWLCMNS 435

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL    EM   N       +PN    TT++ GLCKEG    A EL+ ++ +K    
Sbjct: 436 RFESALRFLREMLLRN------MRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKGFGA 489

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           ++VT N+LIHG C   +  EA  LL +M+++G   D +T+N ++   CK GK++E  +L 
Sbjct: 490 NLVTTNALIHGLCKTGNMQEAVRLLKKMLERGFVLDKITYNTLISGCCKEGKVEEGFKLR 549

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M+ +G+ P+T T++ L+ G C  G+++ A  L+   +S      V++Y
Sbjct: 550 GEMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTY 599



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 94/299 (31%), Positives = 144/299 (48%), Gaps = 8/299 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F ++ N +   P + +   L   L K    +    +F+ +   G+ PD+Y ++  I
Sbjct: 196 AIGVFRFLAN-KGVFPTVKTCTFLLSSLVKANELEKSYWVFETMRQ-GVSPDVYLFSTAI 253

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N FCK G+V     +   + +   +P+ V + +LI GLC    + EA     K+   G  
Sbjct: 254 NAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVN 313

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
             +ITYS LINGL +      A ++ +E             PN V Y T+IDG CK G +
Sbjct: 314 ATLITYSVLINGLMKLEKFNEANSVLKETLEKG------FTPNEVVYNTLIDGYCKMGNL 367

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A  +   M  K INP+ VT NS+I GFC      +A C+L EM+ +G   +   F  I
Sbjct: 368 GDALRIRGDMVSKGINPNSVTLNSIIQGFCKIGQMEQAECILEEMLSRGFSINPGAFTTI 427

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  LC N + + A R L  M+LR + PN    +TL+ G C  G+ + A EL+  +   G
Sbjct: 428 IHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTLVGGLCKEGKHSDAVELWFRLLEKG 486



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 94/308 (30%), Positives = 153/308 (49%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A CI + ML+   S  P  +F  +   L     +++ L   + +    + P+      L
Sbjct: 404 QAECILEEMLSRGFSINP-GAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTTL 462

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   CK G+ S    +  R+L   F  + V   +LI GLC    + EA  L  K+   G 
Sbjct: 463 VGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERGF 522

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             + ITY+TLI+G C+ G       L  EM     K G+  +P+T TY  +I G+C+ G 
Sbjct: 523 VLDKITYNTLISGCCKEGKVEEGFKLRGEMV----KQGI--EPDTFTYNLLIHGMCRIGK 576

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D+A  L+ + K +++ P+V TY  +I G+C A+   E   L  E++ Q ++ + V +N 
Sbjct: 577 LDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKADKIEEGEKLFTELLTQNLELNSVVYNT 636

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C+NG   EA +L + M  +G+ P T+T+S+L+ G C  GR+  AK L   M   G
Sbjct: 637 LIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATYSSLIHGMCNIGRMEDAKCLIDEMRKEG 696

Query: 389 CKHTVFSY 396
               V  Y
Sbjct: 697 LLPNVVCY 704



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 43/343 (12%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +++ +F+ M   +   P +  F+       K    +  + LF  +   G+ P++ TYN L
Sbjct: 230 KSYWVFETM--RQGVSPDVYLFSTAINAFCKGGKVEDAIQLFFDMEKLGVSPNVVTYNNL 287

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+  CK G +   F    ++++       + ++ LI GL    +  EA ++  +    G 
Sbjct: 288 IHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEANSVLKETLEKGF 347

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN + Y+TLI+G C+ G+   AL +  +M +          PN+VT  +II G CK G 
Sbjct: 348 TPNEVVYNTLIDGYCKMGNLGDALRIRGDMVSKG------INPNSVTLNSIIQGFCKIGQ 401

Query: 269 VDKAKELFLQMKDK--NINPDVVT---------------------------------YNS 293
           +++A+ +  +M  +  +INP   T                                   +
Sbjct: 402 MEQAECILEEMLSRGFSINPGAFTTIIHWLCMNSRFESALRFLREMLLRNMRPNDGLLTT 461

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+ G C     ++A  L   ++++G   ++VT N ++  LCK G M EA RLL+ M+ RG
Sbjct: 462 LVGGLCKEGKHSDAVELWFRLLEKGFGANLVTTNALIHGLCKTGNMQEAVRLLKKMLERG 521

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +  T++TL+ G C  G+V    +L   M   G +   F+Y
Sbjct: 522 FVLDKITYNTLISGCCKEGKVEEGFKLRGEMVKQGIEPDTFTY 564



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 1/122 (0%)

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  + +K + P V T   L+     AN+  E +  + E M QGV PDV  F+  ++  C
Sbjct: 199 VFRFLANKGVFPTVKTCTFLLSSLVKANEL-EKSYWVFETMRQGVSPDVYLFSTAINAFC 257

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K GK+++A +L   M   GV+PN  T++ L+ G C  G ++ A      M   G   T+ 
Sbjct: 258 KGGKVEDAIQLFFDMEKLGVSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLI 317

Query: 395 SY 396
           +Y
Sbjct: 318 TY 319


>gi|115468576|ref|NP_001057887.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|113595927|dbj|BAF19801.1| Os06g0565000 [Oryza sativa Japonica Group]
 gi|125597608|gb|EAZ37388.1| hypothetical protein OsJ_21726 [Oryza sativa Japonica Group]
          Length = 687

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 154/337 (45%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M  M    P + +FN L     K    D V  L + +  +G   D+ TYN L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCFCK GR+   +     + R     + V F++ +   C E  + EA  LF +++  G 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK--------- 250
             N  TY+ LI+G C+ G    A+ L +EM        VV         CK         
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAED 384

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                       N + YTT+I G       +KA  L  +MK+K +  D+  Y +LI G C
Sbjct: 385 VLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
             +  +EA  LL +M + G++P+ + +  +MD   K+GK+ EA  +L+ ++  G  PN  
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVI 504

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+  L+DG C  G ++ A   F  M  +G    V +Y
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAY 541



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N +   LA+ +    V  LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+      PD V F SLI G      + E   L  +++  GCK +V+TY+ LIN  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A   F  M     + GV+   N VT++T +D  CKEG V +A +LF QM+ + 
Sbjct: 270 KFGRMETAYGYFAAMK----REGVM--ANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  +  TY  LI G C A   ++A  LL EM+ QGV  +VVT+ V++D LCK  K+ EA 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L +M   GV  N   ++TL+ G  +      A  L   M++ G +  +  Y
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 171/373 (45%), Gaps = 43/373 (11%)

Query: 65  SLEQFLKERCKSSGQGDITAITPN---EAFCIFDYM---------LNMRPSPPPLTSFNL 112
            +EQ ++E  +S  + D+  +T N     FC F  M         +        + +F+ 
Sbjct: 241 EVEQLVEEMRRSGCKADV--VTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFST 298

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
                 K       + LF ++   G+  + +TY  LI+  CK GR+    V+L  ++R  
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
              + V +T L+ GLC E ++ EA  +   ++  G + N + Y+TLI+G     ++  AL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 233 NLFEEMANGNGKFGV---------VC--------------------KPNTVTYTTIIDGL 263
            L  EM N   +  +         +C                    +PN + YTT++D  
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            K G V +A  +  ++ D    P+V+TY +LI G C A   +EA     +M D G+ P+V
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +  ++D LCKNG ++EA +L   M+ +G++ +   ++ L+DG+   G ++ A  L   
Sbjct: 539 QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK 598

Query: 384 MESMGCKHTVFSY 396
           M   G +  +F Y
Sbjct: 599 MIDSGLQLDLFCY 611



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 6/267 (2%)

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           K+ +  L L   + + GL  D+  Y  LI   C + ++     +L ++  S   P+ + +
Sbjct: 412 KNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIY 471

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           T+++       ++ EA A+  K+   G +PNVITY  LI+GLC+ G    A++ F +M +
Sbjct: 472 TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                G+   PN   YT ++DGLCK G +++A +LF +M  K ++ D V Y +L+ G+  
Sbjct: 532 ----LGL--DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             + ++A  L  +M+D G+Q D+  +   +   C    M EA  +   MI  G+ P+ + 
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 645

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++ L+  +   G +  A  L   ME +
Sbjct: 646 YNCLISKYQKLGNLEEAISLQDEMERV 672



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+  +  P  + ++ +L   L K +       + + +   G+  +   Y  
Sbjct: 345 DDAIVLLDEMVR-QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+             +L  +       D   + +LI+GLC   ++ EA +L TK+   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN I Y+T+++   ++G    A+ + +++ +         +PN +TY  +IDGLCK G
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG------FQPNVITYCALIDGLCKAG 517

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A   F +M+D  ++P+V  Y +L+ G C     NEA  L  EM+ +G+  D V + 
Sbjct: 518 SIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYT 577

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D   K G + +A  L   MI  G+  +   ++  + GFC    +  A+E+F  M   
Sbjct: 578 ALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGH 637

Query: 388 G 388
           G
Sbjct: 638 G 638



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 10/220 (4%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A    +L+  L     + +A     +++     PN  T + ++  L R     +   LFE
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           ++            PN  T+  +ID LCKEG + +A+ LF +MK+    PDVVT+NSLI 
Sbjct: 182 QLP----------APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+    + +E   L+ EM   G + DVVT+N +++  CK G+M+ A      M   GV  
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  TFST +D FC  G V  A +LF  M   G     F+Y
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTY 331



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA   F+ M ++    P + ++  L   L K    +  + LF  +   G+  D   Y  
Sbjct: 520 DEAISHFNKMRDL-GLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ + K G +   F +  +++ S    D   +T  I G C  + + EA  +F+++   G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
             P+   Y+ LI+   + G+   A++L +EM
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|15225031|ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|42570711|ref|NP_973429.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g06000
 gi|4006835|gb|AAC95177.1| hypothetical protein [Arabidopsis thaliana]
 gi|110736272|dbj|BAF00106.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250896|gb|AEC05990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|330250897|gb|AEC05991.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/277 (32%), Positives = 143/277 (51%), Gaps = 7/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMGRVSHGFV 163
           P + ++N L     K+   +    +FK + S  +  PD+ TY  +I+ +CK G++     
Sbjct: 239 PDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASS 298

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +LR    P  V F  L+ G      ++ A  +  K+ +FGC P+V+T+++LI+G C
Sbjct: 299 LLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRGKMISFGCFPDVVTFTSLIDGYC 358

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G       L+EEM N  G F     PN  TY+ +I+ LC E  + KA+EL  Q+  K+
Sbjct: 359 RVGQVSQGFRLWEEM-NARGMF-----PNAFTYSILINALCNENRLLKARELLGQLASKD 412

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P    YN +I GFC A   NEAN ++ EM  +  +PD +TF +++   C  G+M EA 
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAV 472

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            +   M+  G +P+  T S+L+      G    A  L
Sbjct: 473 SIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/302 (30%), Positives = 156/302 (51%), Gaps = 8/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD  L  + S     +FN+L   L      +  L L   ++  G  PD+ TYN L
Sbjct: 189 DAMKLFDEHLRFQ-SCNDTKTFNILIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTL 247

Query: 149 INCFCKMGRVSHGFVVLGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I  FCK   ++    +   +   S  +PD V +TS+I G C   ++ EA++L   +   G
Sbjct: 248 IQGFCKSNELNKASEMFKDVKSGSVCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLG 307

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P  +T++ L++G  + G  + A    EE+      FG  C P+ VT+T++IDG C+ G
Sbjct: 308 IYPTNVTFNVLVDGYAKAGEMLTA----EEIRGKMISFG--CFPDVVTFTSLIDGYCRVG 361

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +   L+ +M  + + P+  TY+ LI+  C  N   +A  LL ++  + + P    +N
Sbjct: 362 QVSQGFRLWEEMNARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYN 421

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK GK++EA+ ++E M  +   P+  TF+ L+ G C+ GR+  A  +F  M ++
Sbjct: 422 PVIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAI 481

Query: 388 GC 389
           GC
Sbjct: 482 GC 483



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 155/324 (47%), Gaps = 41/324 (12%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-------------- 141
           + LN+R S     ++NLL   L K   +D    +F+ + S G+ P+              
Sbjct: 95  FKLNIRHS---FWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEK 151

Query: 142 ----------LYTY---------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
                     L ++         N L+N   K+ RV     +    LR     D   F  
Sbjct: 152 GKLHFATALLLQSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNI 211

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+GLC   +  +A  L   +  FGC+P+++TY+TLI G C++     A  +F+++ +G+
Sbjct: 212 LIRGLCGVGKAEKALELLGVMSGFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGS 271

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                VC P+ VTYT++I G CK G + +A  L   M    I P  VT+N L+ G+  A 
Sbjct: 272 -----VCSPDVVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           +   A  +  +M+  G  PDVVTF  ++D  C+ G++ +  RL E M  RG+ PN  T+S
Sbjct: 327 EMLTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTYS 386

Query: 363 TLMDGFCLTGRVNHAKELFVSMES 386
            L++  C   R+  A+EL   + S
Sbjct: 387 ILINALCNENRLLKARELLGQLAS 410



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 137/289 (47%), Gaps = 40/289 (13%)

Query: 142 LYTYNILINCFCKMG---------------RVSHGFVVLGRILRSCFTPDAVAFT----- 181
            +TYN+L    CK G                VS    +LG ++ S      + F      
Sbjct: 103 FWTYNLLTRSLCKAGLHDLAGQMFECMKSDGVSPNNRLLGFLVSSFAEKGKLHFATALLL 162

Query: 182 -------------SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                        SL+  L    R+ +A  LF +   F    +  T++ LI GLC  G  
Sbjct: 163 QSFEVEGCCMVVNSLLNTLVKLDRVEDAMKLFDEHLRFQSCNDTKTFNILIRGLCGVGKA 222

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI-NPD 287
             AL L   M+      G  C+P+ VTY T+I G CK   ++KA E+F  +K  ++ +PD
Sbjct: 223 EKALELLGVMS------GFGCEPDIVTYNTLIQGFCKSNELNKASEMFKDVKSGSVCSPD 276

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTY S+I G+C A    EA+ LL +M+  G+ P  VTFNV++D   K G+M  A  +  
Sbjct: 277 VVTYTSMISGYCKAGKMREASSLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMLTAEEIRG 336

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            MI  G  P+  TF++L+DG+C  G+V+    L+  M + G     F+Y
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVSQGFRLWEEMNARGMFPNAFTY 385



 Score = 79.3 bits (194), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 77/147 (52%), Gaps = 1/147 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++ F +++ M N R   P   ++++L   L           L  +L S  + P  + YN 
Sbjct: 364 SQGFRLWEEM-NARGMFPNAFTYSILINALCNENRLLKARELLGQLASKDIIPQPFMYNP 422

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G+V+   V++  + +    PD + FT LI G C + R+ EA ++F K+ A G
Sbjct: 423 VIDGFCKAGKVNEANVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNL 234
           C P+ IT S+L++ L + G    A +L
Sbjct: 483 CSPDKITVSSLLSCLLKAGMAKEAYHL 509


>gi|357504477|ref|XP_003622527.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497542|gb|AES78745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 721

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 91/274 (33%), Positives = 147/274 (53%), Gaps = 6/274 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L     +   +   + LF+ +   G+ P + T+N ++    K GR +    V   +L
Sbjct: 158 FNSLIRSYGEAGLFKESVKLFENMKLIGVSPGVVTFNSVLLVLLKRGRTNMAKEVYDEML 217

Query: 170 RSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++    PD   +  LI+G C  S + E    F ++ +F C P+V+TY+TL++GLCR G  
Sbjct: 218 KTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNTLVDGLCRAGKI 277

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            VA NL     NG  K      P+ VTYTT+I G C++  VD+A ++  +M  + + P++
Sbjct: 278 KVAHNL----VNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNI 333

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VTYN+LI G C A  W++   +L +M  D G  PD  TFN +++  C  G +DEA ++ E
Sbjct: 334 VTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFE 393

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            M    V+ +++++S L+   C  G    A+ LF
Sbjct: 394 NMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLF 427



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/306 (28%), Positives = 146/306 (47%), Gaps = 15/306 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A  ++D ML      P   ++N+L     K    D     FK + S    PD+ TYN 
Sbjct: 207 NMAKEVYDEMLKTYGVKPDTYTYNILIRGFCKNSMVDEGFYFFKEMTSFDCDPDVVTYNT 266

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           L++  C+ G++     ++  + + C   +PD V +T+LI+G C +  + EA  +  ++  
Sbjct: 267 LVDGLCRAGKIKVAHNLVNGMSKKCKDLSPDVVTYTTLIRGYCRKQEVDEALDILEEMNG 326

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G KPN++TY+TLI GLC          + E+M    G       P+  T+ T+I+  C 
Sbjct: 327 RGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSI-----PDACTFNTLINSHCC 381

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-------G 318
            G +D+A ++F  MK   ++ D  +Y+ LI   C   D+ +A  L  E+ ++       G
Sbjct: 382 AGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYG 441

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P   ++  +   LC+NGK  +A R+L  ++ RG     S +  ++ G C  G   +  
Sbjct: 442 PKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQDPLS-YQIVILGHCKEGSYENGY 500

Query: 379 ELFVSM 384
            L V M
Sbjct: 501 GLLVWM 506



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 128/293 (43%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     + +  D  L + + +N  GL P++ TYN LI   C+  +      +
Sbjct: 296 PDVVTYTTLIRGYCRKQEVDEALDILEEMNGRGLKPNIVTYNTLIKGLCEAQKWDKMKEI 355

Query: 165 LGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L ++     + PDA  F +LI   C    + EA  +F  +K      +  +YS LI  LC
Sbjct: 356 LEQMKGDGGSIPDACTFNTLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLC 415

Query: 224 RTGHTIVALNLFEEMANGN---GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           + G    A  LF+E+         +G   KP   +Y  +   LC+ G   KA+ +  Q+ 
Sbjct: 416 QKGDYGKAEMLFDELFEKEILLSSYGP--KPLAASYKCMFQYLCENGKTKKAERVLRQLM 473

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            +    D ++Y  +I G C    +     LL+ M+ +   PD+  ++ ++D   +  K  
Sbjct: 474 KRGTQ-DPLSYQIVILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPL 532

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            A   LE M+     P TST+ ++++     G V+ +  + V M     +  +
Sbjct: 533 LAKETLEKMLKSSYKPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNI 585



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 134/284 (47%), Gaps = 17/284 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG-LFPDLYTYN 146
           +EA  I + M N R   P + ++N L   L + + +D +  + +++   G   PD  T+N
Sbjct: 315 DEALDILEEM-NGRGLKPNIVTYNTLIKGLCEAQKWDKMKEILEQMKGDGGSIPDACTFN 373

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--- 203
            LIN  C  G +   F V   + +   + D+ +++ LI+ LC +    +A  LF +L   
Sbjct: 374 TLINSHCCAGNLDEAFKVFENMKKLEVSADSASYSVLIRTLCQKGDYGKAEMLFDELFEK 433

Query: 204 ----KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
                ++G KP   +Y  +   LC  G T  A  +  ++     +       + ++Y  +
Sbjct: 434 EILLSSYGPKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-------DPLSYQIV 486

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G CKEG  +    L + M  ++  PD+  Y+ LI GF   +    A   L +M+    
Sbjct: 487 ILGHCKEGSYENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSY 546

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           +P   T++ I++ L + G + E++ ++ +M+ R +  N + FST
Sbjct: 547 KPQTSTWHSILNRLLEQGCVHESAGVIVMMLERNIRQNIN-FST 589



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 71/272 (26%), Positives = 111/272 (40%), Gaps = 38/272 (13%)

Query: 104 PPPLT-SFNLLFGCL---AKTKHYDTVL-SLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           P PL  S+  +F  L    KTK  + VL  L KR        D  +Y I+I   CK G  
Sbjct: 442 PKPLAASYKCMFQYLCENGKTKKAERVLRQLMKRGTQ-----DPLSYQIVILGHCKEGSY 496

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
            +G+ +L  +LR  F PD   +  LI G   + + + A     K+     KP   T+ ++
Sbjct: 497 ENGYGLLVWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSSYKPQTSTWHSI 556

Query: 219 INGLCRTG----HTIVALNLFEEMANGNGKFGVVC-----------KPNTVTYTTIIDGL 263
           +N L   G       V + + E     N  F   C           K   +T     +G 
Sbjct: 557 LNRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNGF 616

Query: 264 C------------KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           C            K   ++  K L   +K+ N N D+   N +I   C  N  +EA  L 
Sbjct: 617 CVKMDEVVQFLCNKRRALEACKLLLFSLKN-NENIDIGLCNIVILDLCKLNKASEAFSLC 675

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            E++D+G+  D++  N ++  L   G+ +EA+
Sbjct: 676 YELVDKGLHQDLICLNDLVAALEAGGRTEEAA 707



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 68/329 (20%), Positives = 129/329 (39%), Gaps = 47/329 (14%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-------NSTGLFP 140
           +EAF +F+ M  +  S     S+++L   L +   Y     LF  L       +S G  P
Sbjct: 386 DEAFKVFENMKKLEVSADS-ASYSVLIRTLCQKGDYGKAEMLFDELFEKEILLSSYGPKP 444

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
              +Y  +    C+ G+      VL ++++   T D +++  +I G C E        L 
Sbjct: 445 LAASYKCMFQYLCENGKTKKAERVLRQLMKRG-TQDPLSYQIVILGHCKEGSYENGYGLL 503

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +      P++  Y  LI+G  R    ++A    E+M   +       KP T T+ +I+
Sbjct: 504 VWMLRRDFLPDIDIYDYLIDGFLRKDKPLLAKETLEKMLKSS------YKPQTSTWHSIL 557

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDV-------------------------------- 288
           + L ++G V ++  + + M ++NI  ++                                
Sbjct: 558 NRLLEQGCVHESAGVIVMMLERNIRQNINFSTKCLQLLFDRGLQDKAFKITELIYKNGFC 617

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V  + ++   C      EA  LL+  +      D+   N+++ +LCK  K  EA  L   
Sbjct: 618 VKMDEVVQFLCNKRRALEACKLLLFSLKNNENIDIGLCNIVILDLCKLNKASEAFSLCYE 677

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++ +G++ +    + L+      GR   A
Sbjct: 678 LVDKGLHQDLICLNDLVAALEAGGRTEEA 706


>gi|413924892|gb|AFW64824.1| hypothetical protein ZEAMMB73_716034 [Zea mays]
          Length = 721

 Score =  162 bits (411), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 97/321 (30%), Positives = 149/321 (46%), Gaps = 29/321 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K +  +     F  + + GL PD+ TYN L+N +CK G +     +
Sbjct: 341 PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWL 400

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG + R+   P  + + +LI G C    + EA  L  ++   GC P+V TY+ L+NG  +
Sbjct: 401 LGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEARRLKEEMVEQGCFPDVCTYTILMNGSRK 460

Query: 225 TGHTIVALNLFEEMANGNGK---FGV---VCK-----------------------PNTVT 255
             +  +A   F+EM +   +   F     +C                        P+TVT
Sbjct: 461 VRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQLREVMMLKGIYPDTVT 520

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y  IIDGLCK G +  AK L  +M    + PD +TY  LIH  C      EA  LL  M+
Sbjct: 521 YNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREARKLLNGMV 580

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
             G+QP VVT+ +++   C+ G +  A      M+  G+ PN  T++ L+   C+TGR  
Sbjct: 581 SDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTP 640

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A   F  M   G     ++Y
Sbjct: 641 LAFRHFHEMLERGLAPNKYTY 661



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 83/272 (30%), Positives = 135/272 (49%), Gaps = 9/272 (3%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L+ F+ +   G+ PD+   N ++       R      V G +L+    P  V + +L+  
Sbjct: 187 LAAFRLVTCHGVAPDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDS 246

Query: 187 LCAESRIMEAAALFTKL--KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
              E R  EA+ L  ++  +  G   N +T++ +I+ L R GH   A+ L + M      
Sbjct: 247 FLKEGRKDEASMLLKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMR----- 301

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
             +  K ++ TY  +I  L + GFV KA+ L ++M+++ I P VVTYN++IHG       
Sbjct: 302 --LSKKASSFTYNPLITALLERGFVRKAEALQMEMENEGIMPTVVTYNAIIHGLLKCEQA 359

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A     EM   G+ PDV+T+N +++  CK G + EA  LL  +   G+ P   T++TL
Sbjct: 360 EAAQVKFAEMRAMGLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTL 419

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +DG+C  G +  A+ L   M   GC   V +Y
Sbjct: 420 IDGYCRLGDLAEARRLKEEMVEQGCFPDVCTY 451



 Score =  131 bits (329), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 143/294 (48%), Gaps = 9/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N +   L     +D V +++  +    + P + TYN L++ F K GR     ++
Sbjct: 200 PDVRDCNRVLRVLRDAARWDDVRAVYGEMLQLRVEPTIVTYNTLLDSFLKEGRKDEASML 259

Query: 165 LGRILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           L  +      F+ + V F  +I  L  E  +  A  L   ++    K +  TY+ LI  L
Sbjct: 260 LKEMETQGGGFSLNDVTFNVVISFLAREGHLENAVKLVDSMR-LSKKASSFTYNPLITAL 318

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
              G    A  L  EM N     G++  P  VTY  II GL K    + A+  F +M+  
Sbjct: 319 LERGFVRKAEALQMEMENE----GIM--PTVVTYNAIIHGLLKCEQAEAAQVKFAEMRAM 372

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            + PDV+TYNSL++ +C A +  EA  LL ++   G+ P V+T+N ++D  C+ G + EA
Sbjct: 373 GLLPDVITYNSLLNRYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGYCRLGDLAEA 432

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RL E M+ +G  P+  T++ LM+G      +  A+E F  M S G +   F+Y
Sbjct: 433 RRLKEEMVEQGCFPDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAY 486



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/275 (29%), Positives = 126/275 (45%), Gaps = 7/275 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L     K ++       F  + S GL PD + YN  I     +      F +
Sbjct: 446 PDVCTYTILMNGSRKVRNLAMAREFFDEMLSKGLQPDCFAYNTRICAELTLSSTPMAFQL 505

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     PD V +  +I GLC    + +A  L TK+ + G +P+ ITY+ LI+  C 
Sbjct: 506 REVMMLKGIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCE 565

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L       NG      +P+ VTYT ++   C+ G +  A   F +M D  I
Sbjct: 566 RGLLREARKLL------NGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGI 619

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ +TYN LIH  C       A     EM+++G+ P+  T+ +++D  C+ G   +A R
Sbjct: 620 EPNEITYNVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIR 679

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           L   M   G+ P+  T + L  GF   G + HA E
Sbjct: 680 LYFEMHQNGIPPDYCTHNALFKGFD-EGHMYHAIE 713



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 65/215 (30%), Positives = 104/215 (48%), Gaps = 7/215 (3%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G++PD  TYN++I+  CK G +     +  +++     PD + +T LI   C    + EA
Sbjct: 513 GIYPDTVTYNVIIDGLCKTGNLKDAKRLKTKMVSDGLQPDCITYTCLIHAHCERGLLREA 572

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             L   + + G +P+V+TY+ L++  CR G+   A   F +M +      V  +PN +TY
Sbjct: 573 RKLLNGMVSDGLQPSVVTYTILVHTCCRRGNLYSAYGWFRKMLD------VGIEPNEITY 626

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             +I  LC  G    A   F +M ++ + P+  TY  LI G C   +W +A  L  EM  
Sbjct: 627 NVLIHALCMTGRTPLAFRHFHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQ 686

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            G+ PD  T N +       G M  A   +E ++L
Sbjct: 687 NGIPPDYCTHNALFKGF-DEGHMYHAIEYMENIVL 720



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/137 (24%), Positives = 60/137 (43%), Gaps = 1/137 (0%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +L     +  +  +    F+++   G+ P+  TYN+LI+  C  GR    F  
Sbjct: 586 PSVVTYTILVHTCCRRGNLYSAYGWFRKMLDVGIEPNEITYNVLIHALCMTGRTPLAFRH 645

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+   +T LI G C E    +A  L+ ++   G  P+  T++ L  G   
Sbjct: 646 FHEMLERGLAPNKYTYTLLIDGNCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF-D 704

Query: 225 TGHTIVALNLFEEMANG 241
            GH   A+   E +  G
Sbjct: 705 EGHMYHAIEYMENIVLG 721


>gi|410109953|gb|AFV61056.1| pentatricopeptide repeat-containing protein 11, partial [Nashia
           inaguensis]
          Length = 431

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 151/280 (53%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K +++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G++  PN VT+TT+I G CK G VD A E++  M  +++ PD++TYN+LI+
Sbjct: 237 EMLVK----GLI--PNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A +  + MI   +  
Sbjct: 291 GLCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K  + +Y
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTY 390



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/263 (34%), Positives = 142/263 (53%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN  CK  ++     +
Sbjct: 175 PSVVSYNTLMNGYIRLGDLDEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P+ V FT+LI G C   R+  A  ++  + +    P++ITY+TLI GLC+
Sbjct: 235 FDEMLVKGLIPNGVTFTTLIXGHCKNGRVDLAMEIYKXMLSQSLLPDLITYNTLIYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM+          KP+  TYTT+IDG CKEG +D A +   +M   NI
Sbjct: 295 KGDLKQAHXLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD+ T+ +I++E CK G + + S+
Sbjct: 349 RLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
           LL+ M   G  P+  T++ LM+G
Sbjct: 409 LLKEMQRNGHVPSVVTYNVLMNG 431



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 152/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIXGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ +++ M + +        P+ +TY T+I GLCK+G + +A  L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKXMLSQS------LLPDLITYNTLIYGLCKKGDLKQAHXLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+   ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTY 425



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 70/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L++G L K         L   ++  GL PD +TY  LI
Sbjct: 266 AMEIYKXMLSQSLLPDLITYNTLIYG-LCKKGDLKQAHXLIDEMSMKGLKPDKFTYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R ++A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDTAFKHRKRMIQGNIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHVPSVVTYNVLMNG 431


>gi|53793262|dbj|BAD54485.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
          Length = 713

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 101/337 (29%), Positives = 154/337 (45%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M  M    P + +FN L     K    D V  L + +  +G   D+ TYN L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCFCK GR+   +     + R     + V F++ +   C E  + EA  LF +++  G 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------CK--------- 250
             N  TY+ LI+G C+ G    A+ L +EM        VV         CK         
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAED 384

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                       N + YTT+I G       +KA  L  +MK+K +  D+  Y +LI G C
Sbjct: 385 VLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLC 444

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
             +  +EA  LL +M + G++P+ + +  +MD   K+GK+ EA  +L+ ++  G  PN  
Sbjct: 445 NVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSGFQPNVI 504

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T+  L+DG C  G ++ A   F  M  +G    V +Y
Sbjct: 505 TYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNVQAY 541



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N +   LA+ +    V  LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+      PD V F SLI G      + E   L  +++  GCK +V+TY+ LIN  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A   F  M     + GV+   N VT++T +D  CKEG V +A +LF QM+ + 
Sbjct: 270 KFGRMETAYGYFAAMK----REGVM--ANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  +  TY  LI G C A   ++A  LL EM+ QGV  +VVT+ V++D LCK  K+ EA 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L +M   GV  N   ++TL+ G  +      A  L   M++ G +  +  Y
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 171/373 (45%), Gaps = 43/373 (11%)

Query: 65  SLEQFLKERCKSSGQGDITAITPN---EAFCIFDYM---------LNMRPSPPPLTSFNL 112
            +EQ ++E  +S  + D+  +T N     FC F  M         +        + +F+ 
Sbjct: 241 EVEQLVEEMRRSGCKADV--VTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFST 298

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
                 K       + LF ++   G+  + +TY  LI+  CK GR+    V+L  ++R  
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
              + V +T L+ GLC E ++ EA  +   ++  G + N + Y+TLI+G     ++  AL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 233 NLFEEMANGNGKFGV---------VC--------------------KPNTVTYTTIIDGL 263
            L  EM N   +  +         +C                    +PN + YTT++D  
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
            K G V +A  +  ++ D    P+V+TY +LI G C A   +EA     +M D G+ P+V
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRDLGLDPNV 538

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
             +  ++D LCKNG ++EA +L   M+ +G++ +   ++ L+DG+   G ++ A  L   
Sbjct: 539 QAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQGNLHDAFALKAK 598

Query: 384 MESMGCKHTVFSY 396
           M   G +  +F Y
Sbjct: 599 MIDSGLQLDLFCY 611



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 136/267 (50%), Gaps = 6/267 (2%)

Query: 121 KHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAF 180
           K+ +  L L   + + GL  D+  Y  LI   C + ++     +L ++  S   P+ + +
Sbjct: 412 KNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIY 471

Query: 181 TSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           T+++       ++ EA A+  K+   G +PNVITY  LI+GLC+ G    A++ F +M +
Sbjct: 472 TTMMDACFKSGKVPEAIAMLQKILDSGFQPNVITYCALIDGLCKAGSIDEAISHFNKMRD 531

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                G+   PN   YT ++DGLCK G +++A +LF +M  K ++ D V Y +L+ G+  
Sbjct: 532 ----LGL--DPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLK 585

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             + ++A  L  +M+D G+Q D+  +   +   C    M EA  +   MI  G+ P+ + 
Sbjct: 586 QGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAV 645

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++ L+  +   G +  A  L   ME +
Sbjct: 646 YNCLISKYQKLGNLEEAISLQDEMERV 672



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/301 (25%), Positives = 144/301 (47%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M+  +  P  + ++ +L   L K +       + + +   G+  +   Y  
Sbjct: 345 DDAIVLLDEMVR-QGVPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTT 403

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+             +L  +       D   + +LI+GLC   ++ EA +L TK+   G
Sbjct: 404 LIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESG 463

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN I Y+T+++   ++G    A+ + +++ +         +PN +TY  +IDGLCK G
Sbjct: 464 LEPNYIIYTTMMDACFKSGKVPEAIAMLQKILDSG------FQPNVITYCALIDGLCKAG 517

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D+A   F +M+D  ++P+V  Y +L+ G C     NEA  L  EM+ +G+  D V + 
Sbjct: 518 SIDEAISHFNKMRDLGLDPNVQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYT 577

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D   K G + +A  L   MI  G+  +   ++  + GFC    +  A+E+F  M   
Sbjct: 578 ALLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGH 637

Query: 388 G 388
           G
Sbjct: 638 G 638



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 10/220 (4%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A    +L+  L     + +A     +++     PN  T + ++  L R     +   LFE
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           ++            PN  T+  +ID LCKEG + +A+ LF +MK+    PDVVT+NSLI 
Sbjct: 182 QLP----------APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+    + +E   L+ EM   G + DVVT+N +++  CK G+M+ A      M   GV  
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  TFST +D FC  G V  A +LF  M   G     F+Y
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTY 331



 Score = 53.9 bits (128), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 70/151 (46%), Gaps = 1/151 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA   F+ M ++   P  + ++  L   L K    +  + LF  +   G+  D   Y  
Sbjct: 520 DEAISHFNKMRDLGLDPN-VQAYTALVDGLCKNGCLNEAVQLFNEMVHKGMSLDKVVYTA 578

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ + K G +   F +  +++ S    D   +T  I G C  + + EA  +F+++   G
Sbjct: 579 LLDGYLKQGNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHG 638

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
             P+   Y+ LI+   + G+   A++L +EM
Sbjct: 639 IAPDRAVYNCLISKYQKLGNLEEAISLQDEM 669


>gi|115446945|ref|NP_001047252.1| Os02g0582300 [Oryza sativa Japonica Group]
 gi|50253069|dbj|BAD29317.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113536783|dbj|BAF09166.1| Os02g0582300 [Oryza sativa Japonica Group]
          Length = 845

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 94/304 (30%), Positives = 148/304 (48%), Gaps = 11/304 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M  +R     + S+  L   L +    D  + LF  ++     PD++ Y  L+   
Sbjct: 210 LFDKM-PLRGFAQDVVSYATLIEGLCEAGRIDEAVELFGEMDQ----PDMHMYAALVKGL 264

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C   R   G ++L R+    + P   A+ +++   C E +  EA  +  ++   G  P V
Sbjct: 265 CNAERGEEGLLMLRRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCV 324

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
           +T + +IN  C+ G    AL + E M          CKPN  TY  ++ G C EG V KA
Sbjct: 325 VTCTAVINAYCKEGRMSDALRVLELMKLRG------CKPNVWTYNALVQGFCNEGKVHKA 378

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L  +M+   +NPD VTYN LI G C       A  LL  M   G+  D  T+N +++ 
Sbjct: 379 MTLLNKMRACGVNPDAVTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINA 438

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK+G+ D+A  L + +  RG+ PN  TF++L++G C +G+ + A +    M S GC   
Sbjct: 439 LCKDGRTDQACSLFDSLETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPD 498

Query: 393 VFSY 396
            ++Y
Sbjct: 499 TYTY 502



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 144/300 (48%), Gaps = 16/300 (5%)

Query: 103 SPPPLTS-----FNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FPDLYTYNILINCFCKMG 156
           SPPPL       F  L   L++       L LF  ++      P   TYN +I   C+  
Sbjct: 108 SPPPLRPLFDRPFASLLAHLSRFALAPLALRLFAHMHRHAPPAPTAPTYNAVIRSLCRRA 167

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            ++     L  ++RS + PDA  F SLI G C  +++  A  LF K+   G   +V++Y+
Sbjct: 168 DLARALRYLSLMVRSGWRPDAYTFNSLIVGYCRTNQVDVARDLFDKMPLRGFAQDVVSYA 227

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLI GLC  G    A+ LF EM           +P+   Y  ++ GLC     ++   + 
Sbjct: 228 TLIEGLCEAGRIDEAVELFGEMD----------QPDMHMYAALVKGLCNAERGEEGLLML 277

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +MK+    P    Y +++   C      EA  +L EM ++G+ P VVT   +++  CK 
Sbjct: 278 RRMKELGWRPSTRAYAAVVDFRCRERKAKEAEEMLQEMFEKGLAPCVVTCTAVINAYCKE 337

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+M +A R+LELM LRG  PN  T++ L+ GFC  G+V+ A  L   M + G      +Y
Sbjct: 338 GRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNKMRACGVNPDAVTY 397



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/279 (30%), Positives = 135/279 (48%), Gaps = 8/279 (2%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC-FTPDA 177
           K       L + + +   G  P+++TYN L+  FC  G+V     +L + +R+C   PDA
Sbjct: 336 KEGRMSDALRVLELMKLRGCKPNVWTYNALVQGFCNEGKVHKAMTLLNK-MRACGVNPDA 394

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V +  LI+G C +  I  A  L   ++  G   +  TY+ LIN LC+ G T  A +LF+ 
Sbjct: 395 VTYNLLIRGQCIDGHIESAFRLLRLMEGDGLIADQYTYNALINALCKDGRTDQACSLFDS 454

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           +           KPN VT+ ++I+GLCK G  D A +   +M      PD  TY+S I  
Sbjct: 455 LETRG------IKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSSFIEH 508

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C      E    + EM+ + V+P  V + +++ +L K       +R    M+  G NP+
Sbjct: 509 LCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSGCNPD 568

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             T++T M  +C+ GR+N A+ + + M   G      +Y
Sbjct: 569 VVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAY 607



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 158/346 (45%), Gaps = 20/346 (5%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +   F++  CK  G          E       ML  +   P   ++ ++   L K +
Sbjct: 498 DTYTYSSFIEHLCKMKGS--------QEGLSFIGEMLQ-KDVKPSTVNYTIVIHKLLKER 548

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
           +Y  V   +  + S+G  PD+ TY   +  +C  GR++    VL  + ++  T D +A+ 
Sbjct: 549 NYGLVARTWGEMVSSGCNPDVVTYTTSMRAYCIEGRLNEAENVLMEMSKNGVTVDTMAYN 608

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE----- 236
           +L+ G  +  +   A ++  ++ +    PN  TY  L+  L R       L L       
Sbjct: 609 TLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWK 668

Query: 237 --EMANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
             E+ +  G F V+ K    PN+ TY++I++G  ++G  ++A  L   MK+ +I+ +   
Sbjct: 669 AIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDI 728

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y +L+  FC +  + +A  L+  M+  G  P ++++  ++  L   G+ D+A  +     
Sbjct: 729 YTALVTCFCKSKRYLDAWVLVCSMIQHGFIPQLMSYQHLLSGLICEGQTDKAKEIFMNSR 788

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +  +P+   +  ++DG    G  + ++E+ + +E M C+ +  +Y
Sbjct: 789 WKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTY 834



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 139/326 (42%), Gaps = 24/326 (7%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD  L  R   P   +FN L   L K+   D      +++ S G  PD YTY+ 
Sbjct: 446 DQACSLFDS-LETRGIKPNAVTFNSLINGLCKSGKADIAWKFLEKMVSAGCTPDTYTYSS 504

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I   CKM     G   +G +L+    P  V +T +I  L  E      A  + ++ + G
Sbjct: 505 FIEHLCKMKGSQEGLSFIGEMLQKDVKPSTVNYTIVIHKLLKERNYGLVARTWGEMVSSG 564

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+V+TY+T +   C  G    A N+  EM+    K GV    +T+ Y T++DG    G
Sbjct: 565 CNPDVVTYTTSMRAYCIEGRLNEAENVLMEMS----KNGVTV--DTMAYNTLMDGHASIG 618

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIH-----------------GFCYANDWNEANCL 310
             D A  +  QM      P+  TY  L+                  G   A +  +   L
Sbjct: 619 QTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAGVWKAIELTDVFGL 678

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
              M      P+  T++ I++   ++G+ +EA+ L+ LM    ++ N   ++ L+  FC 
Sbjct: 679 FDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLNEDIYTALVTCFCK 738

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
           + R   A  L  SM   G    + SY
Sbjct: 739 SKRYLDAWVLVCSMIQHGFIPQLMSY 764



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 109/242 (45%), Gaps = 23/242 (9%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV---------- 158
           ++N L    A     D  +S+ K++ S    P+ +TY IL+    +M  V          
Sbjct: 606 AYNTLMDGHASIGQTDHAVSILKQMTSVASVPNQFTYFILLRHLVRMRLVEDVLPLTPAG 665

Query: 159 -------SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
                  +  F +   + ++ F P++  ++S+++G   + R  EA +L + +K      N
Sbjct: 666 VWKAIELTDVFGLFDVMKKNEFLPNSGTYSSILEGFSEDGRTEEATSLVSLMKEDSISLN 725

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
              Y+ L+   C++   + A  L   M     + G +  P  ++Y  ++ GL  EG  DK
Sbjct: 726 EDIYTALVTCFCKSKRYLDAWVLVCSMI----QHGFI--PQLMSYQHLLSGLICEGQTDK 779

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           AKE+F+  + K+ +PD + +  +I G       + +  ++I +     +P   T+ ++ +
Sbjct: 780 AKEIFMNSRWKDYSPDEIVWKVIIDGLIKKGHSDISREMIIMLERMNCRPSHQTYAMLTE 839

Query: 332 EL 333
           EL
Sbjct: 840 EL 841


>gi|302816541|ref|XP_002989949.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
 gi|300142260|gb|EFJ08962.1| hypothetical protein SELMODRAFT_130917 [Selaginella moellendorffii]
          Length = 447

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 26/304 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M       P + ++N+L     K        SL K +   G  P+++TY+I+
Sbjct: 145 EAHALFSAM----TCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSII 200

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INC+CK+ +V   + V  +++ S   P+AV F +LI G C    + +A  LF +++  GC
Sbjct: 201 INCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGC 260

Query: 209 KPNVITYSTLINGLCRT-GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           K  ++TY+TLI+ LC+  G    A++LF ++       G    P  VTY ++I     +G
Sbjct: 261 KATIVTYNTLIDSLCKKRGGVYTAVDLFNKLE------GAGLTPTIVTYNSLI-----QG 309

Query: 268 FVDKAKE---LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           F ++A +   L   M  +   PDV+TYN LI G C AN   +A  L   M      P+V 
Sbjct: 310 FSERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRLFNGM---ACAPNVT 366

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TFN ++  LC   K++EA  +L+    R   P+ +TF+T++  FC  G ++ A+E+   M
Sbjct: 367 TFNFLIRGLCAQKKVEEARNILD----RMTAPDMTTFNTIILAFCKAGAMHDAREVMKDM 422

Query: 385 ESMG 388
              G
Sbjct: 423 LKHG 426



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/278 (32%), Positives = 146/278 (52%), Gaps = 14/278 (5%)

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
            + +D  L LFK + +    P+ +TYN+LI  FCK G++     V   +  S   P+A  
Sbjct: 3   ARKHDQALRLFKEVLAGLFAPNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNAST 62

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM- 238
             +L+ GLC   ++  A  LF +++A    P   +++ L+ G    G    A+  F+EM 
Sbjct: 63  MNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHNILLRGFFMAGR---AIEFFKEMK 119

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
           A+G        +P+  +Y  ++  L   G + +A  LF  M     +PD++TYN L+ G+
Sbjct: 120 ASG-------VEPDLESYHILLSALSDSGRMAEAHALFSAM---TCSPDIMTYNVLMDGY 169

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C      EA  L+ E++  G +P+V T+++I++  CK  K++EA  +   MI     PN 
Sbjct: 170 CKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNA 229

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            TF+TL+ GFC  G +  A +LF  ME +GCK T+ +Y
Sbjct: 230 VTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTY 267



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/325 (30%), Positives = 156/325 (48%), Gaps = 44/325 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVS----- 159
           P   ++N+L     K       +S+F  + S+GL P+  T N L+   C++G++S     
Sbjct: 23  PNAHTYNVLIRGFCKGGQMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKL 82

Query: 160 --------------------HGFVVLGRILR-------SCFTPDAVAFTSLIKGLCAESR 192
                                GF + GR +        S   PD  ++  L+  L    R
Sbjct: 83  FREMQAGPFLPTSASHNILLRGFFMAGRAIEFFKEMKASGVEPDLESYHILLSALSDSGR 142

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + EA ALF+   A  C P+++TY+ L++G C+ G T  A +L +E+           +PN
Sbjct: 143 MAEAHALFS---AMTCSPDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAG------YEPN 193

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
             TY+ II+  CK   V++A E+F++M + N  P+ VT+N+LI GFC A    +A  L  
Sbjct: 194 VFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFA 253

Query: 313 EMMDQGVQPDVVTFNVIMDELCKN-GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
           EM   G +  +VT+N ++D LCK  G +  A  L   +   G+ P   T+++L+ GF  +
Sbjct: 254 EMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF--S 311

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            R N    L   M + GCK  V +Y
Sbjct: 312 ERANDGLRLLCHMHAEGCKPDVITY 336



 Score = 42.0 bits (97), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 4/91 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           + N     P +T+FN L   L   K  +   ++  R+ +    PD+ T+N +I  FCK G
Sbjct: 355 LFNGMACAPNVTTFNFLIRGLCAQKKVEEARNILDRMTA----PDMTTFNTIILAFCKAG 410

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
            +     V+  +L+  F P+     +L  G+
Sbjct: 411 AMHDAREVMKDMLKHGFYPNTYTTYALAHGI 441



 Score = 41.6 bits (96), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L      +    LF   N     P++ T+N LI   C   +V     +
Sbjct: 331 PDVITYNCLISGLCSANRVEDAQRLF---NGMACAPNVTTFNFLIRGLCAQKKVEEARNI 387

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           L R+      PD   F ++I   C    + +A  +   +   G  PN  T   L +G+
Sbjct: 388 LDRMT----APDMTTFNTIILAFCKAGAMHDAREVMKDMLKHGFYPNTYTTYALAHGI 441


>gi|326500244|dbj|BAK06211.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 600

 Score =  162 bits (410), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/310 (33%), Positives = 160/310 (51%), Gaps = 21/310 (6%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFK------RLNSTGLFPDLYTYNILIN 150
           +L+  PS     S+N +   L +    D  L L +      RL S    P+  +Y  L+ 
Sbjct: 46  LLSALPSVRDAVSYNTVLAALCRQGCLDAALFLLRVMSHEPRLASR---PNAISYTTLMR 102

Query: 151 CFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             C   R +    +L R ++ C   PD V + +LI+GLC  + +  A  L  ++   G +
Sbjct: 103 ALCADRRAAQAVGLL-RSMQDCGVRPDVVTYGTLIRGLCDAADVDTAVELLNEMCESGIE 161

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNV+ YS L++G C+TG       +FEEM+ G G      +P+ V YT +ID LC+ G V
Sbjct: 162 PNVVVYSCLLHGYCKTGRWESVGKVFEEMS-GRG-----IEPDVVMYTALIDSLCRHGKV 215

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA  +   M ++ + P+VVTYN LI+  C      EA  L   M ++GVQPDVVT+N +
Sbjct: 216 KKAARVMDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTL 275

Query: 330 MDELCKNGKMDEASRLLELMILRG---VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           +  L    +MDEA  LLE M ++G   V P+  TF++++ G C  G +  A ++   M  
Sbjct: 276 ITGLSSVLEMDEAMALLEEM-MQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAE 334

Query: 387 MGCKHTVFSY 396
            GC+  + ++
Sbjct: 335 NGCRCNLVAF 344



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 147/292 (50%), Gaps = 5/292 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L     KT  +++V  +F+ ++  G+ PD+  Y  LI+  C+ G+V     V
Sbjct: 162 PNVVVYSCLLHGYCKTGRWESVGKVFEEMSGRGIEPDVVMYTALIDSLCRHGKVKKAARV 221

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +      P+ V +  LI  +C E  + EA  L   +   G +P+V+TY+TLI GL  
Sbjct: 222 MDMMTERGLEPNVVTYNVLINSMCKEGSVREALDLRKNMSEKGVQPDVVTYNTLITGLSS 281

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L EEM  G  +     +P+ +T+ ++I GLCK G++ +A ++   M +   
Sbjct: 282 VLEMDEAMALLEEMMQGETRV----RPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGC 337

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++V +N LI G    +   +A  L+ EM   G+QPD  T++++++  CK  +++ A  
Sbjct: 338 RCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAES 397

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  M  +G+ P    +  L+   C  G +  A++LF  M+   CK    +Y
Sbjct: 398 YLSEMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAY 448



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 141/282 (50%), Gaps = 9/282 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P + ++N L   L+     D  ++L + +    T + PDL T+N +I+  CK+G +    
Sbjct: 267 PDVVTYNTLITGLSSVLEMDEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQAL 326

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            V   +  +    + VAF  LI GL    ++ +A  L  ++ + G +P+  TYS LING 
Sbjct: 327 QVRAMMAENGCRCNLVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGF 386

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+      A +   EM +         +P  V Y  ++  +C +G + +A++LF +M D+
Sbjct: 387 CKMRQVERAESYLSEMRHQG------MEPEPVHYIPLLKAMCDQGMMGQARDLFNEM-DR 439

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N   D   Y+++IHG   + +   A   L +M+D+G+ PD VT+++ ++   K+G +  A
Sbjct: 440 NCKLDAAAYSTMIHGAFKSGEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAA 499

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            R+L+ M   G  P+ + F +L+ G+   G      EL   M
Sbjct: 500 ERVLKQMTASGFVPDVAVFDSLIQGYGAKGDTEKILELTREM 541



 Score =  114 bits (286), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/241 (30%), Positives = 117/241 (48%), Gaps = 10/241 (4%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L +FNLL G L +       + L   + S+GL PD +TY+ILIN FCKM +V      L 
Sbjct: 341 LVAFNLLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLS 400

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      P+ V +  L+K +C +  + +A  LF ++    CK +   YST+I+G  ++G
Sbjct: 401 EMRHQGMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDR-NCKLDAAAYSTMIHGAFKSG 459

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              +A    ++M +     G++  P+ VTY+  I+   K G +  A+ +  QM      P
Sbjct: 460 EKKIAEEFLKDMIDE----GLI--PDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVP 513

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV  ++SLI G+    D  +   L  EM  + V  D    + I+  L   G   E  +LL
Sbjct: 514 DVAVFDSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIVTSL---GASIEGQKLL 570

Query: 347 E 347
           +
Sbjct: 571 Q 571



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 69/279 (24%), Positives = 121/279 (43%), Gaps = 8/279 (2%)

Query: 88  NEAFCIFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  + + M+       P L +FN +   L K       L +   +   G   +L  +N
Sbjct: 286 DEAMALLEEMMQGETRVRPDLMTFNSVIHGLCKIGWMRQALQVRAMMAENGCRCNLVAFN 345

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI    ++ +V     ++  +  S   PD+  ++ LI G C   ++  A +  ++++  
Sbjct: 346 LLIGGLLRVHKVKKAMELMDEMASSGLQPDSFTYSILINGFCKMRQVERAESYLSEMRHQ 405

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P  + Y  L+  +C  G    A +LF EM          CK +   Y+T+I G  K 
Sbjct: 406 GMEPEPVHYIPLLKAMCDQGMMGQARDLFNEMDRN-------CKLDAAAYSTMIHGAFKS 458

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A+E    M D+ + PD VTY+  I+ F  + D   A  +L +M   G  PDV  F
Sbjct: 459 GEKKIAEEFLKDMIDEGLIPDAVTYSIPINMFAKSGDLAAAERVLKQMTASGFVPDVAVF 518

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           + ++      G  ++   L   M  + V  +    ST++
Sbjct: 519 DSLIQGYGAKGDTEKILELTREMTAKDVALDPKIISTIV 557


>gi|226499896|ref|NP_001150085.1| EMB2745 [Zea mays]
 gi|195636584|gb|ACG37760.1| EMB2745 [Zea mays]
 gi|414879767|tpg|DAA56898.1| TPA: EMB2745 [Zea mays]
          Length = 410

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/317 (30%), Positives = 157/317 (49%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+      EA  +FD M  +  +P  +T   L+ G   +  H +   +LF  +   G+ 
Sbjct: 52  GDVA-----EARRVFDVMPRLGVAPNEVTYTALINGYFVRG-HREMGFALFAEMRRDGVE 105

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+LYTYN LI  +C+ G      ++   +       + V++  LI GLC  S++ +A  L
Sbjct: 106 PNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQL 165

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F  ++  G +P+++T++ LI+G  + G    AL+ F +M            P+ VTY  +
Sbjct: 166 FEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAG------LPPSVVTYNEL 219

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G C+   + +A   FL MK++ + P  VTY  LI  F   N+ + A  +L EM   G+
Sbjct: 220 ICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEKAGL 279

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + DV ++ V++  LC  GKM  A +L + M L+GV PN+  +  ++ G+   G    A  
Sbjct: 280 EVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKPNSVLYDMMIYGYGREGSSYKALR 339

Query: 380 LFVSMESMGCKHTVFSY 396
           L + M   G    V SY
Sbjct: 340 LIMEMRKNGLIPNVASY 356



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/279 (29%), Positives = 127/279 (45%), Gaps = 29/279 (10%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+     L++  C+ G V+    V   + R    P+ V +T+LI G           ALF
Sbjct: 37  DVAACTALVHVCCQSGDVAEARRVFDVMPRLGVAPNEVTYTALINGYFVRGHREMGFALF 96

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------ 248
            +++  G +PN+ TY+ LI   CRTG    A  LF+EM        VV            
Sbjct: 97  AEMRRDGVEPNLYTYNCLIGEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRH 156

Query: 249 -----------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
                             +P+ VT+  +IDG  K G +  A   F QMK   + P VVTY
Sbjct: 157 SKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTY 216

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           N LI GFC   D   A    ++M ++G+ P  VT+ +++    K  +MD A  +L  M  
Sbjct: 217 NELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKENEMDRAFMMLSEMEK 276

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            G+  +  ++  L+   C+ G++ HA++LF SM+  G K
Sbjct: 277 AGLEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVK 315



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 121/261 (46%), Gaps = 6/261 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S+N+L   L +       + LF+ +   G+ P + T+N+LI+ + K G++++      
Sbjct: 143 VVSYNILIAGLCRHSKLKDAVQLFEAMRREGIRPSIVTFNLLIDGYGKAGKMANALHFFN 202

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++  +   P  V +  LI G C    I  A   F  +K  G  P  +TY+ LI    +  
Sbjct: 203 QMKAAGLPPSVVTYNELICGFCRVRDIARAVRAFLDMKERGLAPTKVTYTILIAAFAKEN 262

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  +  EM           + +  +Y  ++  LC EG +  A++LF  M  K + P
Sbjct: 263 EMDRAFMMLSEMEKAG------LEVDVQSYGVLLHALCMEGKMMHARKLFQSMDLKGVKP 316

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + V Y+ +I+G+       +A  L++EM   G+ P+V ++ + +  LC  GK  EA  L+
Sbjct: 317 NSVLYDMMIYGYGREGSSYKALRLIMEMRKNGLIPNVASYCLTIRLLCNEGKCQEAEALI 376

Query: 347 ELMILRGVNPNTSTFSTLMDG 367
           + M   G+  + +    L+D 
Sbjct: 377 DDMEHAGLQTSETICRILLDA 397



 Score =  112 bits (280), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 64/221 (28%), Positives = 118/221 (53%), Gaps = 7/221 (3%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTK-LKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           A +  ++++ LC  + +  A A+  +  K+     +V   + L++  C++G    A  +F
Sbjct: 2   AASTAAVVRRLCVAAEVRSALAVLARGTKSGDAALDVAACTALVHVCCQSGDVAEARRVF 61

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           + M     + GV   PN VTYT +I+G    G  +    LF +M+   + P++ TYN LI
Sbjct: 62  DVMP----RLGVA--PNEVTYTALINGYFVRGHREMGFALFAEMRRDGVEPNLYTYNCLI 115

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
             +C   ++  A  L  EM  +GV  +VV++N+++  LC++ K+ +A +L E M   G+ 
Sbjct: 116 GEWCRTGEFKSARLLFDEMPVKGVVHNVVSYNILIAGLCRHSKLKDAVQLFEAMRREGIR 175

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P+  TF+ L+DG+   G++ +A   F  M++ G   +V +Y
Sbjct: 176 PSIVTFNLLIDGYGKAGKMANALHFFNQMKAAGLPPSVVTY 216


>gi|334182346|ref|NP_172156.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189906|gb|AEE28027.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 997

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 45/337 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     TP+ V +T+LI       ++  A  LF  + + GC PN++TYS LI+G C+
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 225 TGHTIVALNLFEEMANGNG---------------------KFGVV--------------- 248
            G    A  +FE M                           +G +               
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C+PN + Y  +IDGLCK G +D+A+E+  +M +      + TY+SLI  + 
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                + A+ +L +M++    P+VV +  ++D LCK GK DEA +L+++M  +G  PN  
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 780

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ ++DGF + G++    EL   M S G      +Y
Sbjct: 781 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 143/303 (47%), Gaps = 11/303 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D M +M    P    ++ L   L K    D    +   ++  G    LYTY+ 
Sbjct: 656 EEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K+ R      VL ++L +   P+ V +T +I GLC   +  EA  L   ++  G
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PNV+TY+ +I+G    G     L L E M    G  GV   PN VTY  +ID  CK G
Sbjct: 775 CQPNVVTYTAMIDGFGMIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNG 828

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  +MK  +       Y  +I GF    ++ E+  LL E+      P +  + 
Sbjct: 829 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYR 886

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +++D L K  +++ A RLLE +          +ST+++L++  CL  +V  A +LF  M 
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946

Query: 386 SMG 388
             G
Sbjct: 947 KKG 949



 Score =  120 bits (300), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 95  DYMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           D++  MR +   P  +T   LL GCL K K       +   +   G +P    +N L++ 
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME------AAALFTKLKA 205
           +C  G  S+ + +L ++++    P  V +  LI  +C +   +       A   ++++ A
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   N I  S+    LC  G    A ++  EM  G G       P+T TY+ +++ LC 
Sbjct: 442 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI-GQGFI-----PDTSTYSKVLNYLCN 495

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              ++ A  LF +MK   +  DV TY  ++  FC A    +A     EM + G  P+VVT
Sbjct: 496 ASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 555

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +  ++    K  K+  A+ L E M+  G  PN  T+S L+DG C  G+V  A ++F  M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 139/333 (41%), Gaps = 50/333 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 292

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST------- 217
              +    F PD V +T LI GLC  S   EA     +++A  C PNV+TYST       
Sbjct: 293 ---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 218 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                       L++  C +G    A  L ++M     K G + 
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV----KCGHM- 404

Query: 250 KPNTVTYTTIIDGLCKE------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
            P  V Y  +I  +C +        +D A++ + +M    +  + +  +S     C A  
Sbjct: 405 -PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           + +A  ++ EM+ QG  PD  T++ +++ LC   KM+ A  L E M   G+  +  T++ 
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++D FC  G +  A++ F  M  +GC   V +Y
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 127/325 (39%), Gaps = 81/325 (24%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK--- 202
           N+L+   C+ G  S     LGR+    F P    +  LI+      R+  A+ +  +   
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263

Query: 203 ---------LKAFG---CK-----------------PNVITYSTLINGLCRTGHTIVALN 233
                    L+ F    CK                 P+ + Y+ LI+GLC         +
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEA-------S 316

Query: 234 LFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           LFEE M   N      C PN VTY+T++ G   +  + + K +   M  +   P    +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE-------------------- 332
           SL+H +C + D + A  LL +M+  G  P  V +N+++                      
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAY 436

Query: 333 ---------------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
                                LC  GK ++A  ++  MI +G  P+TST+S +++  C  
Sbjct: 437 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 496

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            ++  A  LF  M+  G    V++Y
Sbjct: 497 SKMELAFLLFEEMKRGGLVADVYTY 521



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 7/224 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +          +T L L +R+ S G+ P+  TY +
Sbjct: 761 DEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G +     +L  + ++ +      +  +I+G   E   +E+  L  ++    
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDD 877

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  LI+ L +     +AL L EE+A     F       + TY ++I+ LC   
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLCLAN 933

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
            V+ A +LF +M  K + P++ ++ SLI G    +  +EA  LL
Sbjct: 934 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEALLLL 977


>gi|302784708|ref|XP_002974126.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
 gi|300158458|gb|EFJ25081.1| hypothetical protein SELMODRAFT_100773 [Selaginella moellendorffii]
          Length = 538

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 8/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ + + M+     P   T + +L   L ++        +F+ +   G  P+  TY  L
Sbjct: 106 DAYKVLEKMVEESIVPNVFT-YTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTL 164

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I    + G +     V+    RS   P D +  T+++ GLC  SR+ +A     +++  G
Sbjct: 165 IQHLSRAGEIDEALRVMIE-QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMG 223

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN +TYS L++G  + G     +  FEE     G            Y   +D LCK G
Sbjct: 224 VRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGG-----SLEAAAYPGYLDALCKAG 278

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           ++D+A++   +++   + PDVVTY+ LI+ F  A  ++ +  LL +M   GV+PDVVT++
Sbjct: 279 YLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYS 338

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK  K  +A RLLELM   G  PN  T++++MDG C +G+++    ++  M   
Sbjct: 339 TLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKS 398

Query: 388 GCKHTVFSY 396
            C   V +Y
Sbjct: 399 RCSPDVVTY 407



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 21/290 (7%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  + +   + G L K    D  L   + +   G+ P+  TY+ L++ F + G       
Sbjct: 190 PTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGE------ 243

Query: 164 VLGRILR--------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
            L R++R           + +A A+   +  LC    +  A     +L+  G  P+V+TY
Sbjct: 244 -LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTY 302

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           S LIN   R G    +L L E+M   NG      KP+ VTY+T+I+ LCKE     A  L
Sbjct: 303 SMLINTFARAGQFDASLELLEDMRR-NG-----VKPDVVTYSTLINVLCKERKFQDAFRL 356

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
              M+     P+VVTYNS++ G C +   +E + +   M+     PDVVT+++IM+ L K
Sbjct: 357 LELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSK 416

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            G +D A +L EL+      P+ + +S ++   C  G++  A  ++  ME
Sbjct: 417 AGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGME 466



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 107/234 (45%), Gaps = 28/234 (11%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D+ AFT L   L   S+  E   LFT L + G      TY  +++GLC  G    AL L 
Sbjct: 18  DSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALELV 77

Query: 236 EEMANG--------NGKFGVVCK--------------------PNTVTYTTIIDGLCKEG 267
            E++          NG    +C+                    PN  TYT +++GLC+  
Sbjct: 78  RELSGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGLCRSN 137

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               A+E+F +MK     P+ +TY +LI     A + +EA  ++IE     +  DV+T  
Sbjct: 138 KTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLELPTDVITCT 197

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            I+  LCK  ++D+A + +E M   GV PN  T+S L+ GF   G ++     F
Sbjct: 198 TIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIRFF 251



 Score = 65.1 bits (157), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 74/149 (49%), Gaps = 3/149 (2%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
            K ++  +T +   L +     +   LF  +  + +     TY  ++ G C A   N+A 
Sbjct: 15  AKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQAL 74

Query: 309 CLLIEMMDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
            L+ E+   GV  P V  +N I+  LC+  ++ +A ++LE M+   + PN  T++ L++G
Sbjct: 75  ELVREL--SGVYTPTVFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNG 132

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C + +   A+E+F  M+  GCK    +Y
Sbjct: 133 LCRSNKTKLAREVFQEMKRNGCKPNPITY 161



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF + + M     SPP + ++N +   L K+   D V  +++ +  +   PD+ TY+I
Sbjct: 351 QDAFRLLELM-EAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N   K G +     +   I  S   PDA A++ +I  LC   ++ EA  ++  ++   
Sbjct: 410 IMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTV 469

Query: 208 CKPNVI-TYSTLINGLCRTGHTIVALNLFE 236
              N+    + L+  LC    T  A  + E
Sbjct: 470 AGDNICRALAGLVAALCDAKRTDSARRIVE 499



 Score = 42.4 bits (98), Expect = 0.38,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 1/90 (1%)

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L   +++ G + D   F ++  +L +  K  E  RL  L+  RGV    +T+  ++D
Sbjct: 3   AKLLERSVVEAGAKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G C  G  N A EL   +  +    TVF Y
Sbjct: 63  GLCGAGMANQALELVRELSGV-YTPTVFIY 91


>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
          Length = 486

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 155/294 (52%), Gaps = 8/294 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           PNEA   F  ML     P     FN+L   L + K  +T LSLFK+L+  G+ P+  TYN
Sbjct: 184 PNEAIKAFHQMLEFGYEPLA-KHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYN 242

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           ILI   C   ++SH + +  ++ +    PD   ++ L++GLC +S++  A  +  ++   
Sbjct: 243 ILIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNK 302

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P+ +TY+TL+N LCR  +   A  L  +M        + C P+ + Y T+I G C+E
Sbjct: 303 GYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKV------MGCNPDVINYNTVITGFCRE 356

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G    A ++   M +    P+ ++Y +L++G C    ++EA   + EM+  G  P +  +
Sbjct: 357 GRALDACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNGFIPHISIY 416

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           ++++  LC  GK+ EA  +L +M  + + P+ ST+S L+   C   +   A+EL
Sbjct: 417 HLLITGLCNEGKVGEACEVLVMMTKQTLAPHESTWSVLLMRICEDSQTE-AREL 469



 Score =  124 bits (312), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 137/287 (47%), Gaps = 18/287 (6%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLN------STGLFPDLYTYNILINCFCKMGRVSHG 161
           ++++ L   L + + + T+  L +++       + GLF D+      I  + ++G  +  
Sbjct: 134 STYHTLICKLGRARQFKTMEGLIQQMRKDGCPYTPGLFVDI------IEIYGEVGMPNEA 187

Query: 162 FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
                ++L   + P A  F  L+  L     +  A +LF KL  FG  PN  TY+ LI  
Sbjct: 188 IKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLHEFGISPNTRTYNILIRA 247

Query: 222 LCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            C +     A  LF +M          C P+  TY+ ++ GLC++  V  A  +  +M +
Sbjct: 248 HCHSDKLSHAYFLFNKMHKQG------CIPDVETYSILMQGLCRKSQVKTALGVLDEMLN 301

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K   PD +TYN+L++  C   +  EA  LL +M   G  PDV+ +N ++   C+ G+  +
Sbjct: 302 KGYVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALD 361

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           A ++L  M   G  PN  ++ TL++G C  G+ + AK+    M S G
Sbjct: 362 ACQILRDMPENGCLPNALSYRTLVNGLCNEGKFDEAKDFVEEMISNG 408



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 123/258 (47%), Gaps = 16/258 (6%)

Query: 144 TYNILINCFCKMGRVSH-----GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           TY+ LI   CK+GR        G +   R     +TP    F  +I+         EA  
Sbjct: 135 TYHTLI---CKLGRARQFKTMEGLIQQMRKDGCPYTPGL--FVDIIEIYGEVGMPNEAIK 189

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            F ++  FG +P    ++ L+  L        AL+LF+++     +FG+   PNT TY  
Sbjct: 190 AFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALSLFKKLH----EFGI--SPNTRTYNI 243

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I   C    +  A  LF +M  +   PDV TY+ L+ G C  +    A  +L EM+++G
Sbjct: 244 LIRAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEMLNKG 303

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             PD +T+N +++ LC+   + EA RLL  M + G NP+   ++T++ GFC  GR   A 
Sbjct: 304 YVPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDAC 363

Query: 379 ELFVSMESMGCKHTVFSY 396
           ++   M   GC     SY
Sbjct: 364 QILRDMPENGCLPNALSY 381


>gi|302770855|ref|XP_002968846.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
 gi|300163351|gb|EFJ29962.1| hypothetical protein SELMODRAFT_90583 [Selaginella moellendorffii]
          Length = 538

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 156/309 (50%), Gaps = 8/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A+ + + M+     P   T + +L   L ++        +F+ +   G  P+  TY  L
Sbjct: 106 DAYKVLEKMVEESIVPNVFT-YTILLNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTL 164

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTP-DAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I    + G +     V+    RS   P D +  T+++ GLC  SR+ +A     +++  G
Sbjct: 165 IQHLSRAGEIDEALRVMIE-QRSLELPTDVITCTTIVGGLCKASRLDDALKFMEEMRQMG 223

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN +TYS L++G  + G     +  FEE     G            Y   +D LCK G
Sbjct: 224 VRPNEVTYSNLVHGFRQHGELDRVIRFFEEEKARKGG-----SLEAAAYPGYLDALCKAG 278

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           ++D+A++   +++   + PDVVTY+ LI+ F  A  ++ +  LL +M   GV+PDVVT++
Sbjct: 279 YLDRARKSVEELRQSGVVPDVVTYSMLINTFARAGQFDASLELLEDMRRNGVKPDVVTYS 338

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ LCK  K  +A RLLELM   G  PN  T++++MDG C +G+++    ++  M   
Sbjct: 339 TLINVLCKERKFQDAFRLLELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKS 398

Query: 388 GCKHTVFSY 396
            C   V +Y
Sbjct: 399 RCSPDVVTY 407



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 21/290 (7%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  + +   + G L K    D  L   + +   G+ P+  TY+ L++ F + G       
Sbjct: 190 PTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGE------ 243

Query: 164 VLGRILR--------SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
            L R++R           + +A A+   +  LC    +  A     +L+  G  P+V+TY
Sbjct: 244 -LDRVIRFFEEEKARKGGSLEAAAYPGYLDALCKAGYLDRARKSVEELRQSGVVPDVVTY 302

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           S LIN   R G    +L L E+M   NG      KP+ VTY+T+I+ LCKE     A  L
Sbjct: 303 SMLINTFARAGQFDASLELLEDMRR-NG-----VKPDVVTYSTLINVLCKERKFQDAFRL 356

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
              M+     P+VVTYNS++ G C +   +E + +   M+     PDVVT+++IM+ L K
Sbjct: 357 LELMEAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSIIMNGLSK 416

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            G +D A +L EL+      P+ + +S ++   C  G++  A  ++  ME
Sbjct: 417 AGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGME 466



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 71/242 (29%), Positives = 110/242 (45%), Gaps = 28/242 (11%)

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++ +    D+ AFT L   L   S+  E   LFT L + G      TY  +++GLC  G 
Sbjct: 10  VVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGM 69

Query: 228 TIVALNLFEEMANG--------NGKFGVVCK--------------------PNTVTYTTI 259
              AL L  E++          NG    +C+                    PN  TYT +
Sbjct: 70  ANQALELVRELSGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTIL 129

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           ++GLC+      A+E+F +MK     P+ +TY +LI     A + +EA  ++IE     +
Sbjct: 130 LNGLCRSNKTKLAREVFQEMKRNGCKPNPITYGTLIQHLSRAGEIDEALRVMIEQRSLEL 189

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
             DV+T   I+  LCK  ++D+A + +E M   GV PN  T+S L+ GF   G ++    
Sbjct: 190 PTDVITCTTIVGGLCKASRLDDALKFMEEMRQMGVRPNEVTYSNLVHGFRQHGELDRVIR 249

Query: 380 LF 381
            F
Sbjct: 250 FF 251



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 74/148 (50%), Gaps = 3/148 (2%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K ++  +T +   L +     +   LF  +  + +     TY  ++ G C A   N+A  
Sbjct: 16  KVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVDGLCGAGMANQALE 75

Query: 310 LLIEMMDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           L+ E+   GV  P +  +N I+  LC+  ++ +A ++LE M+   + PN  T++ L++G 
Sbjct: 76  LVREL--SGVYTPTLFIYNGIITGLCRASRVMDAYKVLEKMVEESIVPNVFTYTILLNGL 133

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C + +   A+E+F  M+  GCK    +Y
Sbjct: 134 CRSNKTKLAREVFQEMKRNGCKPNPITY 161



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 2/150 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF + + M     SPP + ++N +   L K+   D V  +++ +  +   PD+ TY+I
Sbjct: 351 QDAFRLLELM-EAAGSPPNVVTYNSVMDGLCKSGKMDEVHRVYEMMLKSRCSPDVVTYSI 409

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++N   K G +     +   I  S   PDA A++ +I  LC   ++ EA  ++  ++   
Sbjct: 410 IMNGLSKAGMLDSAVKLFELIKSSREGPDAAAYSMVITSLCRAGKLEEACGMYHGMEVTV 469

Query: 208 CKPNVI-TYSTLINGLCRTGHTIVALNLFE 236
              N+    + L+  LC    T  A  + E
Sbjct: 470 AGDNICRALAGLVAALCDAERTDSARRIVE 499



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%)

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  L   +++ GV+ D   F ++  +L +  K  E  RL  L+  RGV    +T+  ++D
Sbjct: 3   AKLLERSVVEAGVKVDSQAFTLLATKLFRRSKFSEVVRLFTLLASRGVVYGETTYKLVVD 62

Query: 367 GFCLTGRVNHAKEL 380
           G C  G  N A EL
Sbjct: 63  GLCGAGMANQALEL 76


>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 584

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 91/288 (31%), Positives = 151/288 (52%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L   L K         +++++   G+FP+L+TYN ++N  CK GR    F V   +
Sbjct: 235 TYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEM 294

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                + + V + +LI GLC E +  EA  +  ++K+ G  PN+ITY+TLI+G C     
Sbjct: 295 RERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKL 354

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL+L  ++ +          P+ VTY  ++ G CK+G    A ++  +M+++ I P  
Sbjct: 355 GKALSLCRDLKSRG------LSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSK 408

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTY  LI  F  +++  +A  L   M + G+ PDV T++V++   C  G+M+EASRL + 
Sbjct: 409 VTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKS 468

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M+ +   PN   ++T++ G+C  G    A  LF  ME       V SY
Sbjct: 469 MVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASY 516



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/294 (30%), Positives = 153/294 (52%), Gaps = 10/294 (3%)

Query: 94  FDYMLNMRP---SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           FD ++ +R    SP  +    L+ GC  K    +    LF  +   GL  + +TY +LI+
Sbjct: 183 FDLLVELREFGFSPNVVIYTTLIDGC-CKKGEIEKAKDLFFEMGKFGLVANEWTYTVLIH 241

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
              K G    GF +  ++      P+   +  ++  LC + R  +A  +F +++  G   
Sbjct: 242 GLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSC 301

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N++TY+TLI GLCR      A  + ++M +          PN +TY T+IDG C    + 
Sbjct: 302 NIVTYNTLIGGLCREMKANEANEVMDQMKSDG------INPNLITYNTLIDGFCGVRKLG 355

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           KA  L   +K + ++P +VTYN L+ GFC   D + A  ++ EM ++G++P  VT+ +++
Sbjct: 356 KALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILI 415

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           D   ++  M++A +L   M   G+ P+  T+S L+ GFC+ GR+N A  LF SM
Sbjct: 416 DTFARSDNMEKAIQLRSSMEELGLTPDVHTYSVLIHGFCIKGRMNEASRLFKSM 469



 Score =  156 bits (394), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 92/291 (31%), Positives = 147/291 (50%), Gaps = 41/291 (14%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+Y++ I+I   C+ G +   F +L  +    F+P+ V +T+LI G C +  I +A  LF
Sbjct: 162 DVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEKAKDLF 221

Query: 201 TKLKAFGCKPNVITYSTLING-----------------------------------LCRT 225
            ++  FG   N  TY+ LI+G                                   LC+ 
Sbjct: 222 FEMGKFGLVANEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHTYNCVMNQLCKD 281

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G T  A  +F+EM     + GV C  N VTY T+I GLC+E   ++A E+  QMK   IN
Sbjct: 282 GRTKDAFKVFDEMR----ERGVSC--NIVTYNTLIGGLCREMKANEANEVMDQMKSDGIN 335

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P+++TYN+LI GFC      +A  L  ++  +G+ P +VT+N+++   CK G    A ++
Sbjct: 336 PNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKV 395

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ M  RG+ P+  T++ L+D F  +  +  A +L  SME +G    V +Y
Sbjct: 396 VKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEELGLTPDVHTY 446



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 40/286 (13%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTP----------------------------- 175
           Y ++IN + +   +         ++   F P                             
Sbjct: 97  YEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWCFFNESK 156

Query: 176 -----DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                D  +F  +IKG C    I ++  L  +L+ FG  PNV+ Y+TLI+G C+ G    
Sbjct: 157 IKVVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCCKKGEIEK 216

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A +LF EM    GKFG+V   N  TYT +I GL K G   +  E++ +M++  + P++ T
Sbjct: 217 AKDLFFEM----GKFGLVA--NEWTYTVLIHGLFKNGIKKQGFEMYEKMQEHGVFPNLHT 270

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN +++  C      +A  +  EM ++GV  ++VT+N ++  LC+  K +EA+ +++ M 
Sbjct: 271 YNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREMKANEANEVMDQMK 330

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+NPN  T++TL+DGFC   ++  A  L   ++S G   ++ +Y
Sbjct: 331 SDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTY 376



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 138/276 (50%), Gaps = 7/276 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF +FD M   R     + ++N L G L +    +    +  ++ S G+ P+L TYN L
Sbjct: 286 DAFKVFDEMRE-RGVSCNIVTYNTLIGGLCREMKANEANEVMDQMKSDGINPNLITYNTL 344

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FC + ++     +   +     +P  V +  L+ G C +     A  +  +++  G 
Sbjct: 345 IDGFCGVRKLGKALSLCRDLKSRGLSPSLVTYNILVSGFCKKGDTSGAGKVVKEMEERGI 404

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY+ LI+   R+ +   A+ L   M     + G+   P+  TY+ +I G C +G 
Sbjct: 405 KPSKVTYTILIDTFARSDNMEKAIQLRSSME----ELGLT--PDVHTYSVLIHGFCIKGR 458

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A  LF  M +K   P+ V YN+++ G+C       A  L  EM ++ + P+V ++  
Sbjct: 459 MNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEGSSYRALRLFREMEEKELPPNVASYRY 518

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +++ LCK  K  EA  L+E MI  G+ P+ S  + +
Sbjct: 519 MIEVLCKERKSKEAEGLVEKMIDSGIGPSDSILNLI 554



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 72/147 (48%), Gaps = 1/147 (0%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           K  +  Y  II+   +   +D +   F +M DK   P    +N+L+     ++ +N+  C
Sbjct: 91  KTKSRLYEVIINAYVQSQSLDSSIYYFNEMVDKGFVPGSNCFNNLLTFVVGSSSFNQWWC 150

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
              E   + V  DV +F +++   C+ G+++++  LL  +   G +PN   ++TL+DG C
Sbjct: 151 FFNESKIK-VVLDVYSFGIVIKGCCEAGEIEKSFDLLVELREFGFSPNVVIYTTLIDGCC 209

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  AK+LF  M   G     ++Y
Sbjct: 210 KKGEIEKAKDLFFEMGKFGLVANEWTY 236


>gi|449449910|ref|XP_004142707.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Cucumis sativus]
          Length = 757

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L     +   +   + +F  + S G+ P + T+N L+    K GR +    V   +L
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211

Query: 170 RSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +   TPD   F  LI+G C    + +   +F  L  FGC+P+V+TY+TL++GLCR G  
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            VA N+      G GK  V   PN VTYTT+I G C +  ++KA  +F +M ++ +  + 
Sbjct: 272 TVAYNV----VKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANN 327

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +TYN+LI G C A  + +   +L      G   PD  TFN +M   C  G +D+A ++ E
Sbjct: 328 ITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFE 387

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF-------VSMESMGCKHTVFSY 396
            M    + P+++T+S L+   C  G    A++L        + +   GCK  V +Y
Sbjct: 388 RMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAY 443



 Score =  118 bits (296), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNI 147
           +A  +F+ M+N       +T +N L   L + + ++ +  + +     G F PD  T+N 
Sbjct: 310 KALAVFEEMVNQGLKANNIT-YNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNT 368

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL---- 203
           L++C C  G +     V  R+      PD+  +++L++ LC      +A  L  KL    
Sbjct: 369 LMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERK 428

Query: 204 ---KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
                 GCKP V  Y+ +   LC TG T  A   F ++     + G    P   +Y T+I
Sbjct: 429 ILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLM----RRGTQDPP---SYKTLI 481

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G CKEG  +   EL + M  K+  PD  TY SLI+G  + +    A   L +M+    +
Sbjct: 482 MGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHR 541

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           P+  TF+ I+ +L + G+  E++ L++LM+ + +  N S FST
Sbjct: 542 PNSSTFHSILAKLLEQGRTSESASLIQLMLDKNIRQNLS-FST 583



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 37/253 (14%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R     +A  F SL++         E+  +FT +K+ G  P+V+T+++L+  L + G T 
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTN 201

Query: 230 VALNLFEEMANGNG--------------------------------KFGVVCKPNTVTYT 257
           +A  +++EM +  G                                +FG  C+P+ VTY 
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFG--CEPDVVTYN 259

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNI--NPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           T++DGLC+ G V  A  +   M  K++  NP+VVTY +LI G+C   +  +A  +  EM+
Sbjct: 260 TLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMV 319

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV-NPNTSTFSTLMDGFCLTGRV 374
           +QG++ + +T+N ++  LC+  K ++   +LE     G  +P+T TF+TLM   C  G +
Sbjct: 320 NQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNL 379

Query: 375 NHAKELFVSMESM 387
           + A ++F  M  +
Sbjct: 380 DDALKVFERMSEL 392



 Score =  104 bits (259), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 14/289 (4%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           +P  +T   L+ G  AK +  +  L++F+ + + GL  +  TYN LI   C+  +     
Sbjct: 289 NPNVVTYTTLIRGYCAK-REIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIK 347

Query: 163 VVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            +L G      F+PD   F +L+   C    + +A  +F ++     +P+  TYS L+  
Sbjct: 348 DILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRS 407

Query: 222 LCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           LC+ GH   A +L +++       +G+G     CKP    Y  I   LC+ G   KA++ 
Sbjct: 408 LCQGGHYEKAEDLLDKLLERKILLSGDG-----CKPLVAAYNPIFKYLCETGKTKKAEKA 462

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F Q+  +    D  +Y +LI G C    +     LL+ M+ +   PD  T+  +++ L  
Sbjct: 463 FRQLMRRGTQ-DPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFLPDFETYESLINGLLH 521

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             K   A + LE M+     PN+STF +++      GR + +  L   M
Sbjct: 522 MDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRTSESASLIQLM 570



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 67/311 (21%), Positives = 122/311 (39%), Gaps = 47/311 (15%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-------NSTGLFP 140
           ++A  +F+ M  ++  P   T ++ L   L +  HY+    L  +L       +  G  P
Sbjct: 380 DDALKVFERMSELKIQPDSAT-YSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKP 438

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            +  YN +    C+ G+         +++R   T D  ++ +LI G C E        L 
Sbjct: 439 LVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELL 497

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +      P+  TY +LINGL      ++AL   E+M   + +      PN+ T+ +I+
Sbjct: 498 VLMLRKDFLPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHR------PNSSTFHSIL 551

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDV-------------------------------- 288
             L ++G   ++  L   M DKNI  ++                                
Sbjct: 552 AKLLEQGRTSESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGYS 611

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V    LI   C+     + + LL+  ++     D+   N ++ +LC+  K+ EA  L   
Sbjct: 612 VKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYK 671

Query: 349 MILRGVNPNTS 359
           ++  GV+   S
Sbjct: 672 LVEMGVHQQLS 682


>gi|410109927|gb|AFV61043.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           javanica]
          Length = 431

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/280 (33%), Positives = 147/280 (52%), Gaps = 6/280 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K +++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLRYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPX 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
             ++ +L+ G      + E   L + + A G +P+V TYS LINGL +         LF+
Sbjct: 177 VXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G+V  PN+VT+TT+IDG CK G VD A E++ QM  + + PD +TYN+L +
Sbjct: 237 EMLXK----GLV--PNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G C   D N+A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +   ++ L+ G C  GR   A+++   M S+G K    +Y
Sbjct: 351 DDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTY 390



 Score =  152 bits (383), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/263 (33%), Positives = 137/263 (52%), Gaps = 6/263 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N L     +    D    L   + ++G+ PD+YTY++LIN   K   +     +
Sbjct: 175 PXVXSYNTLMNGYIRLGXLDEGFRLKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNEL 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     P++V FT+LI G C   R+  A  ++ ++ +    P+ ITY+TL  GLC+
Sbjct: 235 FDEMLXKGLVPNSVTFTTLIDGHCKNGRVDLAMEIYKQMLSQXLXPDFITYNTLXYGLCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L +EM+          KP+  TYTT+IDG CKEG +D A E   +M  +NI
Sbjct: 295 KGDLNQAHGLIDEMSMKG------LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENI 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D V Y +LI G C      +A  +L EM+  G++PD  T+ +I++E CK G + +  +
Sbjct: 349 XLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXK 408

Query: 345 LLELMILRGVNPNTSTFSTLMDG 367
            L+ M   G  P   T++ LM+G
Sbjct: 409 XLKEMQRNGHVPXVVTYNVLMNG 431



 Score =  150 bits (380), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G +  GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPXVXSYNTLMNGYIRLGXLDEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +  S   PD   ++ LI GL  ES + +   LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMXASGVQPDVYTYSVLINGLXKESXMDDXNELFDEMLXKGLVPNSVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M            P+ +TY T+  GLCK+G +++A  L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQM------LSQXLXPDFITYNTLXYGLCKKGDLNQAHGLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + +  D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKFTYTTLIDGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +    M+  G    V +Y
Sbjct: 373 KMLREMLSVGLKPDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTY 425



 Score = 61.2 bits (147), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 45/167 (26%), Positives = 69/167 (41%), Gaps = 36/167 (21%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  I+  ML+    P  +T   L +G L K    +    L   ++  GL PD +TY  LI
Sbjct: 266 AMEIYKQMLSQXLXPDFITYNTLXYG-LCKKGDLNQAHGLIDEMSMKGLKPDKFTYTTLI 324

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           +  CK G +   F    R+++     D VA+T+LI GLC E R  +A  +  ++ + G K
Sbjct: 325 DGCCKEGDLDAAFEHRKRMIQENIXLDDVAYTALISGLCQEGRSXDAEKMLREMLSVGLK 384

Query: 210 PN-----------------------------------VITYSTLING 221
           P+                                   V+TY+ L+NG
Sbjct: 385 PDXGTYTMIINEFCKKGDVWKGXKXLKEMQRNGHVPXVVTYNVLMNG 431


>gi|302785562|ref|XP_002974552.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
 gi|300157447|gb|EFJ24072.1| hypothetical protein SELMODRAFT_101881 [Selaginella moellendorffii]
          Length = 495

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 166/345 (48%), Gaps = 38/345 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IFD ML  +   P + ++ ++   L      D  L L + + S  L P  +  N+
Sbjct: 54  SKARKIFDDML-YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNM 112

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++C CK G+V   + +  R+   C + D +++  L  GLC   +I  A A+F +++   
Sbjct: 113 LVSCLCKNGKVDAAYELYKRLSDEC-SLDRISYNMLTYGLCKADQIDRALAVFGEMEENA 171

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
             P+++TY+ L+ G CR G    A+ L EEM  G     VV                   
Sbjct: 172 VVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQL 231

Query: 249 --------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                         C PN VT+ T++DGLC  G +D+A  +F  M ++N  P  VTY  L
Sbjct: 232 PTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVL 291

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G   A   ++AN   ++M+ +GV+P+V T+  ++  LC   K+++A  +L+ M   G 
Sbjct: 292 ITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGR 351

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELF---VSMESMGCKHTVFSY 396
            PN  T++ ++   C  G++  A +LF   +   +  CK   ++Y
Sbjct: 352 EPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAY 396



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 148/283 (52%), Gaps = 13/283 (4%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L   L K    D  L++F  +    + P L TYN L+  +C+ GR+     +L  +
Sbjct: 143 SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM 202

Query: 169 LR----SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +     S   PD  ++ ++I G C   ++  A  +  ++   GC PNV+T++TL++GLC 
Sbjct: 203 IEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCL 262

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           TG    A  +FE M   N      C+P  VTYT +I G  +   +DKA + F+ M  + +
Sbjct: 263 TGKLDEANAMFEYMVERN------CEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV 316

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TY +LI G C AN   +A  +L  M   G +P+VVT+  ++  LCK G+++ A++
Sbjct: 317 EPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATK 376

Query: 345 LL-ELMILRGV--NPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L  + M  R     P++  +ST++   C   +   A E F+ M
Sbjct: 377 LFNDAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRM 419



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 38/346 (10%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +P  A  +F +          + ++N     L K  H      +F  +      P++YTY
Sbjct: 16  SPKLASRVFKWAARQEDFQHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTY 75

Query: 146 -----------------------------------NILINCFCKMGRVSHGFVVLGRILR 170
                                              N+L++C CK G+V   + +  R+  
Sbjct: 76  GIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD 135

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
            C + D +++  L  GLC   +I  A A+F +++     P+++TY+ L+ G CR G    
Sbjct: 136 EC-SLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQ 194

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A+ L EEM  G     VV  P+  +Y T+I G CK   +  A+ +  +M     +P+VVT
Sbjct: 195 AMTLLEEMIEGKKGSDVV--PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVT 252

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N+L+ G C     +EAN +   M+++  +P  VT+ V++    +  ++D+A+     M+
Sbjct: 253 FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDML 312

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RGV PN  T++ L+ G C   +V  A E+   M S G +  V +Y
Sbjct: 313 RRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 9/232 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +     K +   T   + +R+  +G  P++ T+N L++  C  G++     +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P AV +T LI G     RI +A   F  +   G +PNV TY+ LI GLC 
Sbjct: 273 FEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCD 332

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF---LQMKD 281
                 AL + + M++  G+     +PN VTYT +I  LCK G +++A +LF   +  + 
Sbjct: 333 ANKVEDALEILKRMSS-TGR-----EPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRT 386

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
               PD   Y+++++  C  + + EA    + M++  +      +  + D L
Sbjct: 387 AKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  T   D   ++F+ +      P   TY +LI    +  R+      
Sbjct: 248 PNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR    P+   +T+LI GLC  +++ +A  +  ++ + G +PNV+TY+ +I  LC+
Sbjct: 308 FVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCK 367

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF    +  G     CKP++  Y+TI+  LC++    +A E FL+M +  +
Sbjct: 368 GGQIERATKLFN---DAMGSRTAKCKPDSYAYSTIVYWLCRQSKFLEAYEYFLRMVESKL 424

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
                 Y ++  G     +  +   + +E    G++
Sbjct: 425 VAKPHIYKAMADGLELVQETEKVERVCLEASAHGIE 460


>gi|297848948|ref|XP_002892355.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297338197|gb|EFH68614.1| hypothetical protein ARALYDRAFT_311741 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  162 bits (410), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 94/338 (27%), Positives = 158/338 (46%), Gaps = 46/338 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ + G L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 481 PDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     TP+ V +T+LI       ++  A  LF  + + GC PN++TYS LI+G C+
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 225 TGHTIVALNLFEEMA----------------NGNGK------FGVV-------------- 248
            G    A  +FE M                 + N +      +G +              
Sbjct: 601 AGQMEKACQIFERMCGSKDVPDVDMYFKQYDDDNSERPNVVIYGALLDGFCKLHRVEEAR 660

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                     C+PN + Y  +IDGLCK G +D+A+E+  +M +      + TY+SLI  +
Sbjct: 661 KLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSSLIDRY 720

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                 + A+ +L +M++    P+VV +  ++D LCK GK DEA +L+++M  +G  PN 
Sbjct: 721 FKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNV 780

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            T++ ++DGF   G++    EL   M S G      +Y
Sbjct: 781 VTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTY 818



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 144/303 (47%), Gaps = 11/303 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D M +M    P    ++ L   L K    D    +   ++  G    LYTY+ 
Sbjct: 657 EEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKAEMSEHGFPATLYTYSS 715

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K+ R      VL ++L +   P+ V +T +I GLC   +  EA  L   ++  G
Sbjct: 716 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 775

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PNV+TY+ +I+G  R G     L L E M    G  GV   PN VTY  +ID  CK G
Sbjct: 776 CQPNVVTYTAMIDGFGRIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNG 829

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  +MK  +       Y  +I GF    ++ E+  LL E+      P +  + 
Sbjct: 830 ALDVAHNLLEEMKQTHWPTHAAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSLYR 887

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +++D L K  +++ A RLLE +          +ST+++L++  CL  +V+ A  LF  M 
Sbjct: 888 LLVDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVDKAFRLFSEMS 947

Query: 386 SMG 388
             G
Sbjct: 948 KKG 950



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 141/299 (47%), Gaps = 16/299 (5%)

Query: 95  DYMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           D++  MR +   P  +T   LL GCL K K       +   +   G +P    +N L++ 
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES-----RIME-AAALFTKLKA 205
           +C  G  S+ + +L ++++   TP  V +  LI  +C +       ++E A   ++++ A
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLA 441

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   N I  S+    LC  G    A ++  EM  G G       P+T TY+ ++  LC 
Sbjct: 442 TGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI-GQGFI-----PDTSTYSKVLGYLCN 495

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              ++ A  LF +MK   +  DV TY  ++  FC A    +A     EM + G  P+VVT
Sbjct: 496 ASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 555

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +  ++    K  K+  A+ L E M+  G  PN  T+S L+DG C  G++  A ++F  M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQMEKACQIFERM 614



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 84/336 (25%), Positives = 133/336 (39%), Gaps = 56/336 (16%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 233 PSRSTYNCLIQAFLKADCLDSASLVHREMSLANLRMDGFTLRCYAYSLCKVGKWREALTL 292

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC- 223
           +       F PD V +T LI GLC  S   EA     +++A  C PNV+TYSTL+ G   
Sbjct: 293 MET---ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 224 --RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             + G     LN+   M  G       C P+   + +++   C  G    A +L  +M  
Sbjct: 350 KKQLGRCKRVLNMM--MMEG-------CYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMVK 400

Query: 282 KNINPDVVTYNSLIHG-----------------------------------------FCY 300
               P  V YN LI                                            C 
Sbjct: 401 CGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKAYSEMLATGVVLNKINVSSFTRCLCS 460

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           A  + +A  ++ EM+ QG  PD  T++ ++  LC   KM+ A  L E M   G+  +  T
Sbjct: 461 AGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCNASKMELAFLLFEEMKRGGLVADVYT 520

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ ++D FC  G +  A++ F  M  +GC   V +Y
Sbjct: 521 YTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556



 Score = 85.1 bits (209), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 61/234 (26%), Positives = 111/234 (47%), Gaps = 8/234 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +     +    +T L L +R+ S G+ P+  TY +
Sbjct: 762 DEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGRIGKIETCLELLERMGSKGVAPNYVTYRV 820

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G +     +L  + ++ +   A  +  +I+G   E   +E+  L  ++    
Sbjct: 821 LIDHCCKNGALDVAHNLLEEMKQTHWPTHAAGYRKVIEGFNKE--FIESLGLLDEIGQDD 878

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  L++ L +     +AL L EE+A     F       + TY ++I+ LC   
Sbjct: 879 TAPFLSLYRLLVDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLCLAN 934

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            VDKA  LF +M  K + P++ T+ SLI G    +  +EA  LL++ +   V P
Sbjct: 935 KVDKAFRLFSEMSKKGVIPEMQTFCSLIKGLFRNSKISEA-LLLLDFISHMVCP 987



 Score = 79.0 bits (193), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/326 (25%), Positives = 130/326 (39%), Gaps = 83/326 (25%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL----CAES-----RIMEA 196
           N+L+  +C+ G  S     LGR+    F P    +  LI+      C +S     R M  
Sbjct: 204 NVLVRKYCRSGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADCLDSASLVHREMSL 263

Query: 197 AAL----FTKLKAFG---CK-----------------PNVITYSTLINGLCRTGHTIVAL 232
           A L    FT L+ +    CK                 P+ + Y+ LI+GLC         
Sbjct: 264 ANLRMDGFT-LRCYAYSLCKVGKWREALTLMETENFVPDTVFYTKLISGLCEA------- 315

Query: 233 NLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           +LFEE M   N      C PN VTY+T++ G   +  + + K +   M  +   P    +
Sbjct: 316 SLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIF 375

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE------------------- 332
           NSL+H +C + D + A  LL +M+  G  P  V +N+++                     
Sbjct: 376 NSLVHAYCTSGDHSYAYKLLKKMVKCGHTPGYVVYNILIGSICGDKDSLSCHLLELAEKA 435

Query: 333 ----------------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
                                 LC  GK ++A  ++  MI +G  P+TST+S ++   C 
Sbjct: 436 YSEMLATGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLGYLCN 495

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
             ++  A  LF  M+  G    V++Y
Sbjct: 496 ASKMELAFLLFEEMKRGGLVADVYTY 521


>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
          Length = 845

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 99/314 (31%), Positives = 155/314 (49%), Gaps = 49/314 (15%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +T FN L    +K   ++    L++ +N  GL P   T+N LI   C  GR+    +
Sbjct: 422 PLRVTGFNALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQL 481

Query: 164 VL------GRILRSCFT----------------------------PDAVAFTSLIKGLCA 189
           +L      G  L + FT                             D +AF++ I GLC 
Sbjct: 482 LLEHMVSKGYCLSTSFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCR 541

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
              + EA   F ++ + G  PN ITY+++I+ LC+ G+   AL L + M       G+V 
Sbjct: 542 LDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQS----GLV- 596

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+  T   +IDGLC+EG +     L L M    + PD VTYN++I+ +C A D N A  
Sbjct: 597 -PDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMN 655

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            + +M+  G +PD+ T+N+ M  LC+N  +++A +LL+ ++    +PN+ T++TLMDG C
Sbjct: 656 FMNKMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGIC 715

Query: 370 ---------LTGRV 374
                    LTGR+
Sbjct: 716 SDVLDRAMILTGRL 729



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/310 (29%), Positives = 148/310 (47%), Gaps = 39/310 (12%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           ++       ++F+ + + G  P L T+N ++  FC  G V     +LG + +S   PD  
Sbjct: 195 RSGEVRAAWNVFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVC 254

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           ++  LIKG C      +A  +F  +   GC+P V+TY+ L++ LC  G    A  LF+EM
Sbjct: 255 SYNILIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEM 314

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN------ 292
           A       V  + NT+T+  +IDG  K G +D+A   + +M+ + + PD  T+N      
Sbjct: 315 AQ------VGIQVNTITFNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNIIAARA 368

Query: 293 -------SLIHG-------------------FCYANDWNEANCLLIEMMDQGVQPDVVTF 326
                   L+H                     C+ +  ++A  LL+  ++QGV   V  F
Sbjct: 369 HKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLRVTGF 428

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++    K G  +EAS L  +M   G+ P++STF+ L+ G C  GR++ A+ L   M S
Sbjct: 429 NALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLEHMVS 488

Query: 387 MG-CKHTVFS 395
            G C  T F+
Sbjct: 489 KGYCLSTSFT 498



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 154/368 (41%), Gaps = 61/368 (16%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI- 147
           EA  +FD M  +      +T FN+L    AK+   D   + ++ + + GL PD  T+NI 
Sbjct: 306 EARRLFDEMAQVGIQVNTIT-FNVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNII 364

Query: 148 -------------------------------LINCFCKMGRVSHGFVVLGRILRSCFTPD 176
                                          L+   C   R+   + +L   +       
Sbjct: 365 AARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRLCWDHRLDDAWELLLGAIEQGVPLR 424

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F +LI     E    EA+ L+  +   G  P+  T++ LI GLC  G    A  L E
Sbjct: 425 VTGFNALIAAYSKEGLHEEASELYRIMNKLGLAPSSSTFNYLIMGLCNQGRLDEAQLLLE 484

Query: 237 EMA-------------------NGNGKFGVVC---------KPNTVTYTTIIDGLCKEGF 268
            M                    +GN    + C         + + + ++  I+GLC+   
Sbjct: 485 HMVSKGYCLSTSFTICLDAYFRDGNAVGALKCWDDMGNIGLQTDFIAFSAYINGLCRLDC 544

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V++A + F +M  + I P+ +TYNS+I   C A +  EA  L+  M   G+ PD+ T N+
Sbjct: 545 VNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNI 604

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D LC+ GK+     LL  M   G+ P+T T++T+++ +C    +N A      M   G
Sbjct: 605 LIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAG 664

Query: 389 CKHTVFSY 396
           C+  +F+Y
Sbjct: 665 CEPDIFTY 672



 Score =  109 bits (272), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 9/243 (3%)

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           + ++ F   G  +    VL R+ RS  TP   A ++L++ L     +  A  +F ++ A 
Sbjct: 153 LALHAFLAAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAE 212

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P++ T++ ++ G C  G   VA  L   M    GK G+   P+  +Y  +I G C  
Sbjct: 213 GPRPSLATFNAMLLGFCHRGMVRVASGLLGIM----GKSGIA--PDVCSYNILIKGHCVF 266

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G+   A ++F  M      P VVTYN L+   C+     EA  L  EM   G+Q + +TF
Sbjct: 267 GWSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITF 326

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL---MDGFCLTGRVNHAKELFVS 383
           NV++D   K+G+MD+AS     M  RG+ P++ TF+ +      F    ++ H  ++F S
Sbjct: 327 NVLIDGYAKSGQMDQASAAYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSS 386

Query: 384 MES 386
             S
Sbjct: 387 HMS 389



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/206 (32%), Positives = 103/206 (50%), Gaps = 8/206 (3%)

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGN 242
           +    A     EA  +  +++  G  P++   S L+  L R+G    A N+FEEM A G 
Sbjct: 155 LHAFLAAGMAAEALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAEGP 214

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
                  +P+  T+  ++ G C  G V  A  L   M    I PDV +YN LI G C   
Sbjct: 215 -------RPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFG 267

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              +A  +   M   G +P VVT+N+++D LC  G+M EA RL + M   G+  NT TF+
Sbjct: 268 WSRDAFKMFEGMHRSGCEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFN 327

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMG 388
            L+DG+  +G+++ A   +  M++ G
Sbjct: 328 VLIDGYAKSGQMDQASAAYREMQARG 353



 Score =  104 bits (260), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 125/295 (42%), Gaps = 38/295 (12%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            L +  R+  +G  P L   + L+    + G V   + V   +      P    F +++ 
Sbjct: 167 ALDVLARVRRSGNTPSLSALSALLRLLFRSGEVRAAWNVFEEMTAEGPRPSLATFNAMLL 226

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C    +  A+ L   +   G  P+V +Y+ LI G C  G +  A  +FE M       
Sbjct: 227 GFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMFEGMHRSG--- 283

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
              C+P  VTY  ++D LC EG + +A+ LF +M    I  + +T+N LI G+  +   +
Sbjct: 284 ---CEPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMD 340

Query: 306 EANCLLIEMMDQGVQPDVVTFNVI----------------------------MD----EL 333
           +A+    EM  +G+ PD  TFN+I                            +D     L
Sbjct: 341 QASAAYREMQARGLVPDSCTFNIIAARAHKFGYAAQLVHDHDMFSSHMSADGLDMLVCRL 400

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           C + ++D+A  LL   I +GV    + F+ L+  +   G    A EL+  M  +G
Sbjct: 401 CWDHRLDDAWELLLGAIEQGVPLRVTGFNALIAAYSKEGLHEEASELYRIMNKLG 455



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/313 (22%), Positives = 132/313 (42%), Gaps = 49/313 (15%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA+  F  M + R   P   ++N +   L K  +    L L + +  +GL PD+YT NI
Sbjct: 546 NEAYQAFAEMTS-RGIVPNNITYNSIISALCKAGNMTEALKLVQNMRQSGLVPDIYTSNI 604

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C+ G++     +L  +  +  TPD V + ++I   C    +  A     K+   G
Sbjct: 605 LIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMNKMLVAG 664

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------NGNGKFGVVC--------- 249
           C+P++ TY+  ++ LCR      A  L +E+            N     +C         
Sbjct: 665 CEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTYNTLMDGICSDVLDRAMI 724

Query: 250 ----------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL----- 294
                     KPNT+T    +   CK+GF ++A     ++++ +   D  T N +     
Sbjct: 725 LTGRLIKMAFKPNTITLNVFLSHFCKQGFGNRALMWAEKLREDSFVFDGATRNIIDWARR 784

Query: 295 -IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
            +     AN+ +   C+ +E +        +T+  +++          +S+   ++  +G
Sbjct: 785 EMEDDPKANNEDIGRCMFLEFL------MFMTYEAMLNS--------RSSKATHMLTEKG 830

Query: 354 VNPNTSTFSTLMD 366
            +P +S+   ++D
Sbjct: 831 FDPASSSMIRILD 843



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 49/93 (52%), Gaps = 4/93 (4%)

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           WN    +  EM  +G +P + TFN ++   C  G +  AS LL +M   G+ P+  +++ 
Sbjct: 203 WN----VFEEMTAEGPRPSLATFNAMLLGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNI 258

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ G C+ G    A ++F  M   GC+ TV +Y
Sbjct: 259 LIKGHCVFGWSRDAFKMFEGMHRSGCEPTVVTY 291


>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
 gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
          Length = 894

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 90/299 (30%), Positives = 147/299 (49%), Gaps = 6/299 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           + M+   P + ++  +   L +      + SL   +   GL P++  YN +I   CK   
Sbjct: 337 MEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRS 396

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
            S    VL +++ S F PD V F +LI   C E  + EA  L  +      +PN ++Y+ 
Sbjct: 397 ASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTP 456

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI+G C  G  +VA +L  EM  G G       P+ VT   +I GL   G VD+A  +  
Sbjct: 457 LIHGFCVRGEVMVASDLLVEMI-GRGH-----TPDVVTLGALIHGLVVSGQVDEALMVRE 510

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           +M ++ + PD   YN LI G C     + A  LL+EM++Q VQPD   +  ++D   ++ 
Sbjct: 511 KMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSD 570

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           K+ +A ++ E M  +G   +   ++ ++ G+C +G +N A     SM  +GC    F+Y
Sbjct: 571 KLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRKVGCIPDEFTY 629



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 154/330 (46%), Gaps = 29/330 (8%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + +  R   P +  +N +   L K +     L++  ++ ++   PD+ T+N LI  FC+ 
Sbjct: 370 WEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDPDVVTFNTLIAAFCRE 429

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G V     +L   +R    P+ +++T LI G C    +M A+ L  ++   G  P+V+T 
Sbjct: 430 GDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTL 489

Query: 216 STLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVCK---------------- 250
             LI+GL  +G    AL + E+MA           N     +CK                
Sbjct: 490 GALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLE 549

Query: 251 ----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P+   YTT+IDG  +   +  A+++F  M++K    D+V YN++I G+C +   NE
Sbjct: 550 QKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNE 609

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A   +  M   G  PD  T+  ++D   K G +  A R L  M+ R   PN  T+++L+ 
Sbjct: 610 AVMCMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRRCKPNIVTYASLIC 669

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G+C  G  + A+ LF SM+S G    V  Y
Sbjct: 670 GYCNIGNTDSAEVLFASMQSEGLFPNVVHY 699



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 6/260 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  P    YN+LI+ +C+ G V  G ++LG +      P  V + ++I  L  +S + + 
Sbjct: 306 GCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKI 365

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
            +L  ++K  G  PNV  Y+T+I  LC+      AL +  +M     +F     P+ VT+
Sbjct: 366 ESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVAS--RF----DPDVVTF 419

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
            T+I   C+EG V++A +L  +   + + P+ ++Y  LIHGFC   +   A+ LL+EM+ 
Sbjct: 420 NTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYTPLIHGFCVRGEVMVASDLLVEMIG 479

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           +G  PDVVT   ++  L  +G++DEA  + E M  R V P+ + ++ L+ G C    ++ 
Sbjct: 480 RGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIYNVLISGLCKKRMLSA 539

Query: 377 AKELFVSMESMGCKHTVFSY 396
           AK L V M     +   F Y
Sbjct: 540 AKNLLVEMLEQKVQPDKFVY 559



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/292 (28%), Positives = 137/292 (46%), Gaps = 10/292 (3%)

Query: 88  NEAFCIFDYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
            E     D ++ M  R   P + +   L   L  +   D  L + +++    + PD   Y
Sbjct: 465 GEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANIY 524

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N+LI+  CK   +S    +L  +L     PD   +T+LI G     ++ +A  +F  ++ 
Sbjct: 525 NVLISGLCKKRMLSAAKNLLVEMLEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFMEE 584

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   +++ Y+ +I G C++G    A+     M        V C P+  TYTT+IDG  K
Sbjct: 585 KGGYRDIVAYNAMIKGYCKSGMMNEAVMCMSSMRK------VGCIPDEFTYTTLIDGYAK 638

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +G +  A      M  +   P++VTY SLI G+C   + + A  L   M  +G+ P+VV 
Sbjct: 639 KGDIKAALRFLCDMMKRRCKPNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVH 698

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF--CLTGRVN 375
           + V++  L K  K  +A+   E M+L   +PN +T   L++G   C  G +N
Sbjct: 699 YTVLIGSLFKKDKAIQAAAYFEHMLLNHCSPNDATMHYLVNGLTNCRYGMIN 750



 Score =  132 bits (331), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/210 (34%), Positives = 113/210 (53%), Gaps = 8/210 (3%)

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +++GLC E R+ E   L       GC P  + Y+ LI+G CR G     L L  EM    
Sbjct: 282 MVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMK- 340

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
              G++  P  VTY  II  L ++  + K + L  +MK++ ++P+V  YN++I+  C   
Sbjct: 341 ---GIM--PTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCR 395

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
             ++A  +L +M+     PDVVTFN ++   C+ G ++EA +LL   I R + PN  +++
Sbjct: 396 SASQALAVLNQMVASRFDPDVVTFNTLIAAFCREGDVEEALKLLREAIRRELEPNQLSYT 455

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            L+ GFC+ G V  A +L V M  +G  HT
Sbjct: 456 PLIHGFCVRGEVMVASDLLVEM--IGRGHT 483



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 139/345 (40%), Gaps = 57/345 (16%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G + +   +EA  + + M   R   P    +N+L   L K +      +L   +    +
Sbjct: 494 HGLVVSGQVDEALMVREKMAE-RQVMPDANIYNVLISGLCKKRMLSAAKNLLVEMLEQKV 552

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD + Y  LI+ F +  ++S    +   +       D VA+ ++IKG C    + EA  
Sbjct: 553 QPDKFVYTTLIDGFIRSDKLSDARKIFEFMEEKGGYRDIVAYNAMIKGYCKSGMMNEAVM 612

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
             + ++  GC P+  TY+TLI+G  + G    AL    +M          CKPN VTY +
Sbjct: 613 CMSSMRKVGCIPDEFTYTTLIDGYAKKGDIKAALRFLCDMMKRR------CKPNIVTYAS 666

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF-------------------- 298
           +I G C  G  D A+ LF  M+ + + P+VV Y  LI                       
Sbjct: 667 LICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAYFEHMLLNH 726

Query: 299 CYANDWN----------------EANC--------------LLIEMMDQGVQPDVVTFNV 328
           C  ND                   +NC              +   ++  G+ P +  +N 
Sbjct: 727 CSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDGLDPRISAYNA 786

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           I+  LC++  + +A  L E M  +G  P+  TF +L+ GF   G+
Sbjct: 787 IIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGK 831



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 21/224 (9%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P++ TY  LI  +C +G      V+   +      P+ V +T LI  L  + + ++AAA 
Sbjct: 659 PNIVTYASLICGYCNIGNTDSAEVLFASMQSEGLFPNVVHYTVLIGSLFKKDKAIQAAAY 718

Query: 200 FTKLKAFGCKPNVITYSTLINGL--CRTG------------HTIVA-LNLFEEMANGNGK 244
           F  +    C PN  T   L+NGL  CR G            H   A L++F+ + +    
Sbjct: 719 FEHMLLNHCSPNDATMHYLVNGLTNCRYGMINSNCSDTDQAHKKSALLDVFKGLISDG-- 776

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
                 P    Y  II  LC+   + KA EL  +M +K   PD VT+ SL++GF      
Sbjct: 777 ----LDPRISAYNAIIFSLCRHNMLGKAMELKEKMSNKGCLPDPVTFLSLLYGFSSVGKS 832

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            +    L     Q     +  +  ++++   +   DE SR+L+L
Sbjct: 833 GKWRSALPNEFQQDEFEIICKYMTLLNQHVMSPVRDEVSRVLQL 876



 Score = 47.4 bits (111), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 49/113 (43%), Gaps = 2/113 (1%)

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMM--DQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           PD    N L+        W  A  L  EM+  D+    D  +  V++  LC  G+++E  
Sbjct: 237 PDAPHCNRLLRLLVDRRRWECARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGR 296

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           RL+E     G  P    ++ L+DG+C  G V     L   ME  G   TV +Y
Sbjct: 297 RLIEARWGEGCVPGAVFYNVLIDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTY 349



 Score = 46.6 bits (109), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 28/127 (22%), Positives = 52/127 (40%), Gaps = 2/127 (1%)

Query: 272 AKELFLQM--KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           A+ L+ +M  +D+    D  +   ++ G C      E   L+     +G  P  V +NV+
Sbjct: 258 ARRLYGEMLARDREGGADDYSTCVMVRGLCLEGRVEEGRRLIEARWGEGCVPGAVFYNVL 317

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D  C+ G +     LL  M ++G+ P   T+  ++        +   + L   M+  G 
Sbjct: 318 IDGYCRRGDVGRGLLLLGEMEMKGIMPTVVTYGAIIHWLGRKSDLTKIESLLWEMKERGL 377

Query: 390 KHTVFSY 396
              V  Y
Sbjct: 378 SPNVQIY 384


>gi|302759663|ref|XP_002963254.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
 gi|300168522|gb|EFJ35125.1| hypothetical protein SELMODRAFT_79771 [Selaginella moellendorffii]
          Length = 495

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 166/345 (48%), Gaps = 38/345 (11%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  IFD ML  +   P + ++ ++   L      D  L L + + S  L P  +  N+
Sbjct: 54  SKARKIFDDML-YKECLPNIYTYGIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNM 112

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++C CK G+V   + +  R+   C + D +++  L  GLC   +I  A A+F +++   
Sbjct: 113 LVSCLCKNGKVDAAYELYKRLSDEC-SLDRISYNMLTYGLCKADQIDRALAVFGEMEENA 171

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV------------------- 248
             P+++TY+ L+ G CR G    A+ L EEM  G     VV                   
Sbjct: 172 VVPSLLTYNGLLYGYCRAGRMEQAMTLLEEMIEGKKGSDVVPDMYSYNTVISGFCKARQL 231

Query: 249 --------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
                         C PN VT+ T++DGLC  G +D+A  +F  M ++N  P  VTY  L
Sbjct: 232 PTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVL 291

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           I G   A   ++AN   ++M+ +GV+P+V T+  ++  LC   K+++A  +L+ M   G 
Sbjct: 292 ITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGR 351

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELF---VSMESMGCKHTVFSY 396
            PN  T++ ++   C  G++  A +LF   +   +  CK   ++Y
Sbjct: 352 EPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRTAKCKPDSYAY 396



 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/283 (31%), Positives = 148/283 (52%), Gaps = 13/283 (4%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N+L   L K    D  L++F  +    + P L TYN L+  +C+ GR+     +L  +
Sbjct: 143 SYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQAMTLLEEM 202

Query: 169 LR----SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +     S   PD  ++ ++I G C   ++  A  +  ++   GC PNV+T++TL++GLC 
Sbjct: 203 IEGKKGSDVVPDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCL 262

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           TG    A  +FE M   N      C+P  VTYT +I G  +   +DKA + F+ M  + +
Sbjct: 263 TGKLDEANAMFEYMVERN------CEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGV 316

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+V TY +LI G C AN   +A  +L  M   G +P+VVT+  ++  LCK G+++ A++
Sbjct: 317 EPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCKGGQIERATK 376

Query: 345 LL-ELMILRGV--NPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L  + M  R     P++  +ST++   C   +   A E F+ M
Sbjct: 377 LFNDAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRM 419



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 157/346 (45%), Gaps = 38/346 (10%)

Query: 86  TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +P  A  +F +          + ++N     L K  H      +F  +      P++YTY
Sbjct: 16  SPKLASRVFKWAARQEDFEHTVFTYNAYLNALVKGGHGSKARKIFDDMLYKECLPNIYTY 75

Query: 146 -----------------------------------NILINCFCKMGRVSHGFVVLGRILR 170
                                              N+L++C CK G+V   + +  R+  
Sbjct: 76  GIVLRGLCDDAKTDAALELLQDMESKMLTPTTFIVNMLVSCLCKNGKVDAAYELYKRLSD 135

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
            C + D +++  L  GLC   +I  A A+F +++     P+++TY+ L+ G CR G    
Sbjct: 136 EC-SLDRISYNMLTYGLCKADQIDRALAVFGEMEENAVVPSLLTYNGLLYGYCRAGRMEQ 194

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A+ L EEM  G     VV  P+  +Y T+I G CK   +  A+ +  +M     +P+VVT
Sbjct: 195 AMTLLEEMIEGKKGSDVV--PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVT 252

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           +N+L+ G C     +EAN +   M+++  +P  VT+ V++    +  ++D+A+     M+
Sbjct: 253 FNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDML 312

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RGV PN  T++ L+ G C   +V  A E+   M S G +  V +Y
Sbjct: 313 RRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTY 358



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 111/232 (47%), Gaps = 9/232 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +     K +   T   + +R+  +G  P++ T+N L++  C  G++     +
Sbjct: 213 PDMYSYNTVISGFCKARQLPTARYVLRRMIKSGCSPNVVTFNTLLDGLCLTGKLDEANAM 272

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++     P AV +T LI G     RI +A   F  +   G +PNV TY+ LI GLC 
Sbjct: 273 FEYMVERNCEPTAVTYTVLITGHARALRIDKANDYFVDMLRRGVEPNVYTYTALIGGLCD 332

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF---LQMKD 281
                 AL + + M++  G+     +PN VTYT +I  LCK G +++A +LF   +  + 
Sbjct: 333 ANKVEDALEILKRMSS-TGR-----EPNVVTYTRVIGALCKGGQIERATKLFNDAMGSRT 386

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
               PD   Y+++I+  C  + + EA    + M++  +      +  + D L
Sbjct: 387 AKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKLVAKPHIYKAMADGL 438



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 100/216 (46%), Gaps = 3/216 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L  T   D   ++F+ +      P   TY +LI    +  R+      
Sbjct: 248 PNVVTFNTLLDGLCLTGKLDEANAMFEYMVERNCEPTAVTYTVLITGHARALRIDKANDY 307

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +LR    P+   +T+LI GLC  +++ +A  +  ++ + G +PNV+TY+ +I  LC+
Sbjct: 308 FVDMLRRGVEPNVYTYTALIGGLCDANKVEDALEILKRMSSTGREPNVVTYTRVIGALCK 367

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF    +  G     CKP++  Y+TII  LC++    +A E FL+M +  +
Sbjct: 368 GGQIERATKLFN---DAMGSRTAKCKPDSYAYSTIIYWLCRQSKFLEAYEYFLRMVESKL 424

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
                 Y ++  G     +  +   + +E    G++
Sbjct: 425 VAKPHIYKAMADGLELVQETEKVERVCLEASAHGIE 460


>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
 gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
          Length = 487

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 84/246 (34%), Positives = 134/246 (54%), Gaps = 7/246 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD++ YN +I+ FCK  R+     VL R+ R  F+PD V    +I   C + +I  A  +
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 200 FTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           F +L K   CKP +ITY+ LI      G    AL L +EM +         +P+T TY  
Sbjct: 102 FEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRG------LEPDTFTYNV 155

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I  GLCKEG VD+A E    +  +   PDV+TYN L+        W+E    + E+  +G
Sbjct: 156 ITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRG 215

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P+VVT+++++  LC++GK++E+  L+++M  +G+ P+   +  L+  FC  G+++ A 
Sbjct: 216 CEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAI 275

Query: 379 ELFVSM 384
           E    M
Sbjct: 276 EFLDCM 281



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/336 (27%), Positives = 160/336 (47%), Gaps = 29/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F+ +L      P L ++ +L          D  L L   + S GL PD +TYN++ 
Sbjct: 98  ALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVIT 157

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              CK G+V   F  +  +      PD + +  L++ L  + +  E     +++ + GC+
Sbjct: 158 RGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCE 217

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANG------------------NGKFGVVCK- 250
           PNV+TYS LI+ LCR G    ++NL + M                      GK  +  + 
Sbjct: 218 PNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEF 277

Query: 251 ----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     P+ V Y TI+  LCK G  D A E+F ++ +    P+V +YN+++     
Sbjct: 278 LDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWS 337

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           + D   A  ++ +M+ +G+ PDV+T+N ++  LC++G +DEA  LL  M+     PN  +
Sbjct: 338 SGDRYRALGMISQMLSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRFQPNIVS 397

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + T++ G C   R++ A E+  +M   GC+    +Y
Sbjct: 398 YKTVLLGLCKAHRIDDAIEVLAAMIENGCQPNETTY 433



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/294 (28%), Positives = 145/294 (49%), Gaps = 9/294 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +     K    ++  ++  R+   G  PD+ T+NI+I  FC  G++     V
Sbjct: 42  PDVFAYNAVISGFCKANRIESAKTVLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKV 101

Query: 165 LGRILR--SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
              +L+  +C  P  + +T LI+    E  I EA  L  ++ + G +P+  TY+ +  GL
Sbjct: 102 FEELLKDNNC-KPTLITYTILIEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGL 160

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A   F    N  G     CKP+ +TY  ++  L  +G  D+ ++   ++  +
Sbjct: 161 CKEGKVDRAFE-FVRTLNSRG-----CKPDVITYNILLRALLNQGKWDEGEKWMSEIFSR 214

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+VVTY+ LI   C      E+  L+  M ++G+ PD   ++ ++   C+ GK+D A
Sbjct: 215 GCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMA 274

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              L+ MI  G  P+   ++T+M   C  G  +HA E+F  ++ +GC   V SY
Sbjct: 275 IEFLDCMICDGFLPDIVNYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSY 328



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/257 (29%), Positives = 125/257 (48%), Gaps = 6/257 (2%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+     LI  F     +     V+G IL     PD  A+ ++I G C  +RI  A  +
Sbjct: 8   PDVILCTKLIKGFFNSRNIDKATRVMG-ILEKHGKPDVFAYNAVISGFCKANRIESAKTV 66

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++K  G  P+V+T++ +I   C  G   +AL +FEE+   N      CKP  +TYT +
Sbjct: 67  LDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNN-----CKPTLITYTIL 121

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+    EG +D+A +L  +M  + + PD  TYN +  G C     + A   +  +  +G 
Sbjct: 122 IEAYILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGC 181

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +PDV+T+N+++  L   GK DE  + +  +  RG  PN  T+S L+   C  G++  +  
Sbjct: 182 KPDVITYNILLRALLNQGKWDEGEKWMSEIFSRGCEPNVVTYSILISSLCRDGKIEESVN 241

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M+  G     + Y
Sbjct: 242 LVKVMKEKGLTPDAYCY 258



 Score = 90.5 bits (223), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/183 (30%), Positives = 86/183 (46%), Gaps = 37/183 (20%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +P+ +  T +I G      +DKA  + + + +K+  PDV  YN++I GFC AN    A  
Sbjct: 7   QPDVILCTKLIKGFFNSRNIDKATRV-MGILEKHGKPDVFAYNAVISGFCKANRIESAKT 65

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGK------------------------------- 338
           +L  M  +G  PDVVT N+++   C  GK                               
Sbjct: 66  VLDRMKRKGFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAY 125

Query: 339 -----MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
                +DEA +LL+ M+ RG+ P+T T++ +  G C  G+V+ A E   ++ S GCK  V
Sbjct: 126 ILEGGIDEALKLLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDV 185

Query: 394 FSY 396
            +Y
Sbjct: 186 ITY 188


>gi|413915825|gb|AFW21589.1| hypothetical protein ZEAMMB73_481763 [Zea mays]
 gi|413923991|gb|AFW63923.1| hypothetical protein ZEAMMB73_685382 [Zea mays]
          Length = 953

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 141/262 (53%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  +N L      +   D    + +R+ + G+ P + T+  LI  +CKM R+   F +  
Sbjct: 224 VVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYE 283

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++RS   PD V  ++L+ GLC + R  EA ALF ++   G  PN +TY T I+ L +  
Sbjct: 284 GMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQ 343

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               +L L  EM +     GV    + V YTT++D L KEG +++AK++       NI P
Sbjct: 344 RVNESLGLLGEMVS----RGVAM--DLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITP 397

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + VTY  L+   C A + + A  +L++M ++ V P+VVTF+ I++ L K G + +A+  +
Sbjct: 398 NCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYM 457

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
             M   G+ PN  T+ TL+DGF
Sbjct: 458 RKMKDSGIAPNVVTYGTLIDGF 479



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 151/327 (46%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N+   CL +   +    S  K + +TGL PD  TYN +I+  C+ G  S    +
Sbjct: 572 PDAVVYNVFINCLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKL 631

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP-------------- 210
           L  +  S   P+ + +T+L+ GL     + +A  L  ++ + G  P              
Sbjct: 632 LNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTYRRVLQACSG 691

Query: 211 ---------------------NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                ++  Y+TL++ LC  G T  A  + +EM       G   
Sbjct: 692 SRSPYVILEVHELMMGAGLHADITVYNTLVHVLCCHGMTRKATIVLDEM------LGRGI 745

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+T+T+  +I G CK   +D A   + QM  + ++P++ T+N+L+ G   A    EA+ 
Sbjct: 746 APDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPNIATFNTLLGGLESAGRIGEADT 805

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           ++ EM   G++P+ +T+++++    K     EA RL   M+ +G  P  ST+++L+  F 
Sbjct: 806 VICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLISDFA 865

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +N AKELF  M+  G  HT  +Y
Sbjct: 866 KAGMMNQAKELFSEMKRRGVLHTSSTY 892



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 158/340 (46%), Gaps = 34/340 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NE+  +   M++ R     L  +  +   L K    +    + +   S  + P+  TY +
Sbjct: 346 NESLGLLGEMVS-RGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTV 404

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++  C+ G +     +L ++     +P+ V F+S++ GL     I +AA    K+K  G
Sbjct: 405 LVDAHCRAGNIDGAEQMLLQMEEKSVSPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSG 464

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEM--------------------ANGN----- 242
             PNV+TY TLI+G  +      AL+++ +M                     NGN     
Sbjct: 465 IAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAE 524

Query: 243 ------GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
                 G+ G++   + V Y T++DGL K G +  A ++  ++ ++N++PD V YN  I+
Sbjct: 525 ALFKDMGERGLLL--DHVNYATLMDGLFKTGNMPAALKVGQELMERNLSPDAVVYNVFIN 582

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C    ++EA   L EM + G++PD  T+N ++   C+ G   +A +LL  M    + P
Sbjct: 583 CLCRLGKFSEAKSFLKEMRNTGLEPDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKP 642

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  T++TL+ G    G V  AK L   M S G   T  +Y
Sbjct: 643 NLITYTTLVVGLLEAGVVEKAKYLLNEMASAGFTPTPLTY 682



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 132/252 (52%), Gaps = 6/252 (2%)

Query: 145 YNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           +N LI+ +CK+  ++    V+ R+     + D V + +L+ G         A  +  ++K
Sbjct: 192 WNALIDGYCKVQDMAAALAVVERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMK 251

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
           A G +P+V+T++TLI   C+      A  L+E M     + GV+  P+ VT + ++DGLC
Sbjct: 252 ADGVEPSVVTHTTLIGEYCKMKRIEEAFTLYEGMV----RSGVL--PDVVTLSALVDGLC 305

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           ++G   +A  LF +M    + P+ VTY + I         NE+  LL EM+ +GV  D+V
Sbjct: 306 RDGRFSEAYALFREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLV 365

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +  +MD L K GK++EA  +L   +   + PN  T++ L+D  C  G ++ A+++ + M
Sbjct: 366 MYTTVMDRLGKEGKIEEAKDVLRHALSDNITPNCVTYTVLVDAHCRAGNIDGAEQMLLQM 425

Query: 385 ESMGCKHTVFSY 396
           E       V ++
Sbjct: 426 EEKSVSPNVVTF 437



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 9/300 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF +++ M+     P  +T   L+ G L +   +    +LF+ ++  G+ P+  TY  
Sbjct: 276 EEAFTLYEGMVRSGVLPDVVTLSALVDG-LCRDGRFSEAYALFREMDKIGVAPNHVTYCT 334

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+   K+ RV+    +LG ++      D V +T+++  L  E +I EA  +     +  
Sbjct: 335 FIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGKEGKIEEAKDVLRHALSDN 394

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN +TY+ L++  CR G+   A  +  +M   +        PN VT+++I++GL K G
Sbjct: 395 ITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKS------VSPNVVTFSSILNGLVKRG 448

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            + KA     +MKD  I P+VVTY +LI GF        A  +  +M+ +GV+ +    +
Sbjct: 449 CIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALDVYRDMLHEGVEANNFIVD 508

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +++ L KNG ++EA  L + M  RG+  +   ++TLMDG   TG  N    L V  E M
Sbjct: 509 SLVNGLRKNGNIEEAEALFKDMGERGLLLDHVNYATLMDGLFKTG--NMPAALKVGQELM 566



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/284 (25%), Positives = 144/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +   L G   K K  +   +L++ +  +G+ PD+ T + L++  C+ GR S  + +
Sbjct: 257 PSVVTHTTLIGEYCKMKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYAL 316

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ V + + I  L    R+ E+  L  ++ + G   +++ Y+T+++ L +
Sbjct: 317 FREMDKIGVAPNHVTYCTFIDSLAKVQRVNESLGLLGEMVSRGVAMDLVMYTTVMDRLGK 376

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A ++     + N        PN VTYT ++D  C+ G +D A+++ LQM++K++
Sbjct: 377 EGKIEEAKDVLRHALSDN------ITPNCVTYTVLVDAHCRAGNIDGAEQMLLQMEEKSV 430

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P+VVT++S+++G        +A   + +M D G+ P+VVT+  ++D   K    + A  
Sbjct: 431 SPNVVTFSSILNGLVKRGCIAKAAGYMRKMKDSGIAPNVVTYGTLIDGFFKCQGQEAALD 490

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   M+  GV  N     +L++G    G +  A+ LF  M   G
Sbjct: 491 VYRDMLHEGVEANNFIVDSLVNGLRKNGNIEEAEALFKDMGERG 534



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 137/301 (45%), Gaps = 20/301 (6%)

Query: 102 PSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           P+PPP      L   LA +       S F+ +       D  T N +I  +C +    H 
Sbjct: 46  PAPPPARLLRRLIPALASSGLVAAA-SRFRPVPG-----DPLTLNSIILSYCSL----HA 95

Query: 162 FVVLGRILRSCFTP------DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
                 +LRS   P      D V++   + GL  +     A  + +++   G   + +T 
Sbjct: 96  LRPALSLLRSSSGPQPQVAADTVSYNIFLAGLSEQGHGRLAPPVLSEMCKRGVPWDGVTM 155

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           ST + GL RTG    A  L E +  G G  G+      V +  +IDG CK   +  A  +
Sbjct: 156 STALVGLSRTGLVGEAAALAEMLVRGRGIDGL----GVVGWNALIDGYCKVQDMAAALAV 211

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +M  + ++ DVV YN+L+ GF Y+ D + A  +   M   GV+P VVT   ++ E CK
Sbjct: 212 VERMTTQGLSLDVVGYNTLVAGFFYSGDADAAWEVAERMKADGVEPSVVTHTTLIGEYCK 271

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
             +++EA  L E M+  GV P+  T S L+DG C  GR + A  LF  M+ +G      +
Sbjct: 272 MKRIEEAFTLYEGMVRSGVLPDVVTLSALVDGLCRDGRFSEAYALFREMDKIGVAPNHVT 331

Query: 396 Y 396
           Y
Sbjct: 332 Y 332



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 133/293 (45%), Gaps = 11/293 (3%)

Query: 96  YMLNMRPS----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           Y+LN   S    P PLT   +L  C      Y  +L + + +   GL  D+  YN L++ 
Sbjct: 665 YLLNEMASAGFTPTPLTYRRVLQACSGSRSPY-VILEVHELMMGAGLHADITVYNTLVHV 723

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            C  G      +VL  +L     PD + F +LI G C  S +  A A + ++   G  PN
Sbjct: 724 LCCHGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQGLSPN 783

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           + T++TL+ GL   G    A  +  EM     K G+  +PN +TY  ++ G  K+    +
Sbjct: 784 IATFNTLLGGLESAGRIGEADTVICEMK----KMGL--EPNNLTYDILVTGYAKKSNKVE 837

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  L+ +M  K   P   TYNSLI  F  A   N+A  L  EM  +GV     T++++++
Sbjct: 838 ALRLYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLN 897

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              K     E   LL+ M   G  P+  T S++   F   G    A+ L  ++
Sbjct: 898 GWSKLRNGTEVRILLKDMKELGFKPSKGTISSMSRAFSKPGMTWEARRLLKTL 950



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/321 (22%), Positives = 132/321 (41%), Gaps = 41/321 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N +     +  +    L L   +  + + P+L TY  L+    + G V     +
Sbjct: 607 PDQATYNTMISAQCREGNTSKALKLLNEMKWSSIKPNLITYTTLVVGLLEAGVVEKAKYL 666

Query: 165 LGRILRSCFTP-----------------------------------DAVAFTSLIKGLCA 189
           L  +  + FTP                                   D   + +L+  LC 
Sbjct: 667 LNEMASAGFTPTPLTYRRVLQACSGSRSPYVILEVHELMMGAGLHADITVYNTLVHVLCC 726

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                +A  +  ++   G  P+ IT++ LI G C++ H   A   + +M +         
Sbjct: 727 HGMTRKATIVLDEMLGRGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQG------L 780

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN  T+ T++ GL   G + +A  +  +MK   + P+ +TY+ L+ G+   ++  EA  
Sbjct: 781 SPNIATFNTLLGGLESAGRIGEADTVICEMKKMGLEPNNLTYDILVTGYAKKSNKVEALR 840

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L  EM+ +G  P   T+N ++ +  K G M++A  L   M  RGV   +ST+  L++G+ 
Sbjct: 841 LYCEMVSKGFIPKASTYNSLISDFAKAGMMNQAKELFSEMKRRGVLHTSSTYDILLNGWS 900

Query: 370 LTGRVNHAKELFVSMESMGCK 390
                   + L   M+ +G K
Sbjct: 901 KLRNGTEVRILLKDMKELGFK 921


>gi|147798083|emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
          Length = 722

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 11/293 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN     L K         L  R+   G  P+ +TY +L++  C+MG+V    ++
Sbjct: 285 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 344

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA-AALFTKLKAFGCKPNVITYSTLINGLC 223
           L ++      P+ V F +LI G  +  R+ EA A +   + + GC P++ TY+TLI GLC
Sbjct: 345 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 400

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+ + A  L  EM          C+PN +TYT +ID  CKEG +++A+ +  +M  K 
Sbjct: 401 KKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 454

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  + V YN LI   C      +A  +  +M  +G +PD+ TFN ++  LCK  K +EA 
Sbjct: 455 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 514

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L + M+L GV  NT T++TL+  F   G +  A +L   M   GC     +Y
Sbjct: 515 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITY 567



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K  +  +   L   +   G  P++ TY ILI+ FCK GR+     V
Sbjct: 387 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 446

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       +AV +  LI  LC + ++ +A  +F  + + GCKP++ T+++LI GLC+
Sbjct: 447 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 506

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L+++M       GV+   NT+TY T+I    + G + +A +L   M  +  
Sbjct: 507 VNKFEEALGLYQDML----LEGVIA--NTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 560

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D +TYN LI   C A +  +   L  +MM +G+ P+ ++ N++++ LC+ G +  A  
Sbjct: 561 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 620

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  MI RG+ P+  T+++L++G C TGR   A  LF  ++  G      +Y
Sbjct: 621 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 672



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 155/318 (48%), Gaps = 16/318 (5%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G+   + PN    +F  ML+   SP   T F ++   L      D+  +L K +   G  
Sbjct: 195 GNCPKVVPN----VFYEMLSKGISPTVYT-FGVVMKALCLVNEVDSACALLKDMTRHGCV 249

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+   Y  LI+   K+GRV+    +L  +L     PD   F   I GLC   RI EAA L
Sbjct: 250 PNAIVYQTLIHALXKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 309

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   G  PN  TY  L++GLCR G    A  L  ++ N          PN V + T+
Sbjct: 310 VDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----------PNVVLFNTL 359

Query: 260 IDGLCKEGFVDKAKELFLQ-MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I+G    G +D+AK +  + M      PD+ TYN+LI G C       A  L+ EM  +G
Sbjct: 360 INGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG 419

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P+V+T+ +++D  CK G+++EA  +L+ M  +G+  N   ++ L+   C   +V  A 
Sbjct: 420 CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDAL 479

Query: 379 ELFVSMESMGCKHTVFSY 396
            +F  M S GCK  +F++
Sbjct: 480 NMFGDMSSKGCKPDIFTF 497



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 6/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +LN  P+P  +    L+ G +++ +  +    + + + S G  PD++TYN LI   CK G
Sbjct: 344 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKG 403

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     ++  +      P+ + +T LI   C E R+ EA  +  ++   G   N + Y+
Sbjct: 404 YLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYN 463

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+ LC+      ALN+F +M++        CKP+  T+ ++I GLCK    ++A  L+
Sbjct: 464 CLISALCKDEKVQDALNMFGDMSSKG------CKPDIFTFNSLIFGLCKVNKFEEALGLY 517

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M  + +  + +TYN+LIH F       EA  L+ +M+ +G   D +T+N ++  LC+ 
Sbjct: 518 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 577

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G +++   L E M+ +G+NPN  + + L++G C TG + HA E    M   G    + +Y
Sbjct: 578 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTY 637



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 11/311 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +   M  +    P   S+N++   L        V ++F  + S G+ P +YT+ 
Sbjct: 162 PGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 221

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++   C +  V     +L  + R    P+A+ + +LI  L    R+ E   L  ++   
Sbjct: 222 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALXKVGRVNEVLKLLEEMLLM 281

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P+V T++  I+GLC+      A  L + M            PN+ TY  ++ GLC+ 
Sbjct: 282 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG------FTPNSFTYGVLMHGLCRM 335

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-MMDQGVQPDVVT 325
           G VD+A+ L     +K  NP+VV +N+LI+G+      +EA  ++ E M+  G  PD+ T
Sbjct: 336 GKVDEARMLL----NKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFT 391

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++  LCK G +  A  L+  M ++G  PN  T++ L+D FC  GR+  A+ +   M 
Sbjct: 392 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMS 451

Query: 386 SMGCKHTVFSY 396
             G       Y
Sbjct: 452 GKGLALNAVGY 462



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 6/265 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             +N L   L K +     L++F  ++S G  PD++T+N LI   CK+ +      +   
Sbjct: 460 VGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 519

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L      + + + +LI        + EA  L   +   GC  + ITY+ LI  LCR G+
Sbjct: 520 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 579

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
               L LFE+M +          PN ++   +I+GLC+ G +  A E    M  + + PD
Sbjct: 580 IEKGLALFEDMMSKG------LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 633

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +VTYNSLI+G C      EA  L  ++  +G+ PD +T+N ++   CK G  D+A  LL 
Sbjct: 634 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 693

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTG 372
             +  G  PN  T+  L+  F   G
Sbjct: 694 RGVDSGFIPNEVTWYILVSNFIKEG 718



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L K   ++  L L++ +   G+  +  TYN LI+ F + G +     +
Sbjct: 492 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 551

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L      D + +  LIK LC    I +  ALF  + + G  PN I+ + LINGLCR
Sbjct: 552 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 611

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           TG+   AL    +M +          P+ VTY ++I+GLCK G   +A  LF +++ + I
Sbjct: 612 TGNIQHALEFLRDMIHRG------LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 665

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            PD +TYN+LI   C    +++A+ LL   +D G  P+ VT+ +++    K G  +
Sbjct: 666 CPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 721


>gi|449500717|ref|XP_004161177.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g02060, chloroplastic-like [Cucumis sativus]
          Length = 720

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 149/296 (50%), Gaps = 13/296 (4%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L     +   +   + +F  + S G+ P + T+N L+    K GR +    V   +L
Sbjct: 152 FNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTNMAKKVYDEML 211

Query: 170 RSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +   TPD   F  LI+G C    + +   +F  L  FGC+P+V+TY+TL++GLCR G  
Sbjct: 212 STYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFGCEPDVVTYNTLVDGLCRAGKV 271

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            VA N+      G GK  V   PN VTYTT+I G C +  ++KA  +F +M ++ +  + 
Sbjct: 272 TVAYNV----VKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMVNQGLKANN 327

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +TYN+LI G C A  + +   +L      G   PD  TFN +M   C  G +D+A ++ E
Sbjct: 328 ITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFE 387

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF-------VSMESMGCKHTVFSY 396
            M    + P+++T+S L+   C  G    A++L        + +   GCK  V +Y
Sbjct: 388 RMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKPLVAAY 443



 Score =  119 bits (297), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 136/283 (48%), Gaps = 17/283 (6%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNI 147
           +A  +F+ M+N       +T +N L   L + + ++ +  + +     G F PD  T+N 
Sbjct: 310 KALAVFEEMVNQGLKANNIT-YNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNT 368

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL---- 203
           L++C C  G +     V  R+      PD+  +++L++ LC      +A  L  KL    
Sbjct: 369 LMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRSLCQGGHYEKAEDLLDKLLERK 428

Query: 204 ---KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
                 GCKP V  Y+ +   LC TG T  A   F ++     + G    P   +Y T+I
Sbjct: 429 ILLSGDGCKPLVAAYNPIFKYLCETGKTKKAEKAFRQLM----RRGTQDPP---SYKTLI 481

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G CKEG  +   EL + M  K+  PD  TY SLI+G  + +    A   L +M+    +
Sbjct: 482 MGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHR 541

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           P+  TF+ I+ +L + G+  E++ L++LM+ + +  N S FST
Sbjct: 542 PNSSTFHSILAKLLEQGRASESASLIQLMLDKNIRQNLS-FST 583



 Score =  115 bits (288), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 128/253 (50%), Gaps = 37/253 (14%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           R     +A  F SL++         E+  +FT +K+ G  P+V+T+++L+  L + G T 
Sbjct: 142 RGIVKLEARFFNSLMRNFNRAGLFQESIKVFTIMKSHGVSPSVVTFNSLLTILLKRGRTN 201

Query: 230 VALNLFEEMANGNG--------------------------------KFGVVCKPNTVTYT 257
           +A  +++EM +  G                                +FG  C+P+ VTY 
Sbjct: 202 MAKKVYDEMLSTYGVTPDTFTFNILIRGFCMNGMVDDGFRIFNDLSRFG--CEPDVVTYN 259

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNI--NPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           T++DGLC+ G V  A  +   M  K++  NP+VVTY +LI G+C   +  +A  +  EM+
Sbjct: 260 TLVDGLCRAGKVTVAYNVVKGMGKKSVDLNPNVVTYTTLIRGYCAKREIEKALAVFEEMV 319

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV-NPNTSTFSTLMDGFCLTGRV 374
           +QG++ + +T+N ++  LC+  K ++   +LE     G  +P+T TF+TLM   C  G +
Sbjct: 320 NQGLKANNITYNTLIKGLCEARKFEKIKDILEGTAGDGTFSPDTCTFNTLMHCHCHAGNL 379

Query: 375 NHAKELFVSMESM 387
           + A ++F  M  +
Sbjct: 380 DDALKVFERMSEL 392



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 133/289 (46%), Gaps = 14/289 (4%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           +P  +T   L+ G  AK +  +  L++F+ + + GL  +  TYN LI   C+  +     
Sbjct: 289 NPNVVTYTTLIRGYCAK-REIEKALAVFEEMVNQGLKANNITYNTLIKGLCEARKFEKIK 347

Query: 163 VVL-GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            +L G      F+PD   F +L+   C    + +A  +F ++     +P+  TYS L+  
Sbjct: 348 DILEGTAGDGTFSPDTCTFNTLMHCHCHAGNLDDALKVFERMSELKIQPDSATYSALVRS 407

Query: 222 LCRTGHTIVALNLFEEMA------NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           LC+ GH   A +L +++       +G+G     CKP    Y  I   LC+ G   KA++ 
Sbjct: 408 LCQGGHYEKAEDLLDKLLERKILLSGDG-----CKPLVAAYNPIFKYLCETGKTKKAEKA 462

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
           F Q+  +    D  +Y +LI G C    +     LL+ M+ +   PD  T+  +++ L  
Sbjct: 463 FRQLMRRGTQ-DPPSYKTLIMGHCKEGTFESGYELLVLMLRKDFXPDFETYESLINGLLH 521

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             K   A + LE M+     PN+STF +++      GR + +  L   M
Sbjct: 522 MDKPLLALQSLEKMLRSSHRPNSSTFHSILAKLLEQGRASESASLIQLM 570



 Score = 73.2 bits (178), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/337 (21%), Positives = 132/337 (39%), Gaps = 47/337 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-------NSTGLFP 140
           ++A  +F+ M  ++  P   T ++ L   L +  HY+    L  +L       +  G  P
Sbjct: 380 DDALKVFERMSELKIQPDSAT-YSALVRSLCQGGHYEKAEDLLDKLLERKILLSGDGCKP 438

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
            +  YN +    C+ G+         +++R   T D  ++ +LI G C E        L 
Sbjct: 439 LVAAYNPIFKYLCETGKTKKAEKAFRQLMRRG-TQDPPSYKTLIMGHCKEGTFESGYELL 497

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
             +      P+  TY +LINGL      ++AL   E+M   + +      PN+ T+ +I+
Sbjct: 498 VLMLRKDFXPDFETYESLINGLLHMDKPLLALQSLEKMLRSSHR------PNSSTFHSIL 551

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDV-------------------------------- 288
             L ++G   ++  L   M DKNI  ++                                
Sbjct: 552 AKLLEQGRASESASLIQLMLDKNIRQNLSFSTGCVRLLFGAGMNDKAFQLVHLLYGKGYS 611

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V    LI   C+     + + LL+  ++     D+   N ++ +LC+  K+ EA  L   
Sbjct: 612 VKMEELIRYLCHCRKVIQGSKLLLFSLESHQFVDMDLCNTVIFQLCEINKLSEAFSLYYK 671

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           ++  GV+   S  + L       G++  A+ +   ME
Sbjct: 672 LVEMGVHQQLSCQNQLKVSLKAGGKLEEAESVQKRME 708


>gi|297835856|ref|XP_002885810.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331650|gb|EFH62069.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 536

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 95/281 (33%), Positives = 143/281 (50%), Gaps = 20/281 (7%)

Query: 114 FGCLAKTKHYDTVLSLFKRLN--------------STGLFPDLYTYNILINCFCKMGRVS 159
           FGCL     Y+T++  F + N              S+G  PD+ TY  +I+ +CK G++ 
Sbjct: 235 FGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQ 294

Query: 160 HGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI 219
              V+L  +LR    P  V F  L+ G      +  A  +  K+ +FGC P+V+T+++LI
Sbjct: 295 EASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTSLI 354

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           +G CR G       L+EEM N  G F     PN  TY+ +I+ LCKE  + KA+EL  Q+
Sbjct: 355 DGYCRVGQVNQGFRLWEEM-NARGMF-----PNAFTYSILINALCKENRLLKARELLGQL 408

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
             K+I P    YN +I GFC A   NEA  ++ EM  +  +PD +TF +++   C  G+M
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRM 468

Query: 340 DEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            EA  +   M+  G +P+  T S+L+      G    A  L
Sbjct: 469 FEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEAYHL 509



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +FN+L   L      +  + L   ++  G  PD+ TYN LI  FCK   +     +   +
Sbjct: 208 TFNILIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDV 267

Query: 169 LRSCF-TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
             S   +PD V +TS+I G C   ++ EA+ L   +   G  P  +T++ L++G  + G 
Sbjct: 268 KSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGE 327

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A    EE+      FG  C P+ VT+T++IDG C+ G V++   L+ +M  + + P+
Sbjct: 328 MHTA----EEIRGKMISFG--CFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPN 381

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
             TY+ LI+  C  N   +A  LL ++  + + P    +N ++D  CK GK++EA  ++E
Sbjct: 382 AFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVE 441

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            M  +   P+  TF+ L+ G C+ GR+  A  +F  M ++GC
Sbjct: 442 EMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGC 483



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 98/324 (30%), Positives = 155/324 (47%), Gaps = 41/324 (12%)

Query: 96  YMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD-------------- 141
           + LN+R S     ++NLL   L K   +D    +F+ + S G+ P+              
Sbjct: 95  FKLNIRHS---FWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEK 151

Query: 142 ----------LYTY---------NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
                     L +Y         N L+N   K+ RV     +    LR     D   F  
Sbjct: 152 GKLHCATALLLQSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNI 211

Query: 183 LIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           LI+GLC   +  +A  L   +  FGC P+++TY+TLI G C++     A  +F+++ + +
Sbjct: 212 LIRGLCGVGKAEKAVELLGGMSGFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSS 271

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
           G     C P+ VTYT++I G CK G + +A  L   M    I P  VT+N L+ G+  A 
Sbjct: 272 G-----CSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAG 326

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           + + A  +  +M+  G  PDVVTF  ++D  C+ G++++  RL E M  RG+ PN  T+S
Sbjct: 327 EMHTAEEIRGKMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYS 386

Query: 363 TLMDGFCLTGRVNHAKELFVSMES 386
            L++  C   R+  A+EL   + S
Sbjct: 387 ILINALCKENRLLKARELLGQLAS 410



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/281 (30%), Positives = 145/281 (51%), Gaps = 7/281 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L K    +  + LF+         D  T+NILI   C +G+      +LG +  
Sbjct: 175 NSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKAEKAVELLGGMSG 234

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF-GCKPNVITYSTLINGLCRTGHTI 229
               PD V + +LIKG C  + + +A  +F  +K+  GC P+V+TY+++I+G C+ G   
Sbjct: 235 FGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQ 294

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L ++M     + G+   P  VT+  ++DG  K G +  A+E+  +M      PDVV
Sbjct: 295 EASVLLDDML----RLGIY--PTNVTFNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVV 348

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           T+ SLI G+C     N+   L  EM  +G+ P+  T++++++ LCK  ++ +A  LL  +
Sbjct: 349 TFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQL 408

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             + + P    ++ ++DGFC  G+VN A  +   ME   CK
Sbjct: 409 ASKDIIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKKCK 449



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/289 (32%), Positives = 135/289 (46%), Gaps = 40/289 (13%)

Query: 142 LYTYNILINCFCKMGR---------------VSHGFVVLGRILRS--------CFTPD-- 176
            +TYN+L    CK G                +S    +LG ++ S        C T    
Sbjct: 103 FWTYNLLTRSLCKAGMHDLAGQMFECMKSDGISPNSRLLGFLVSSFAEKGKLHCATALLL 162

Query: 177 --------AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                    +   SL+  L    R+ +A  LF +   F    +  T++ LI GLC  G  
Sbjct: 163 QSYEVEGCCMVVNSLLNTLVKLDRVEDAMKLFEEHLRFQSCNDTKTFNILIRGLCGVGKA 222

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPD 287
             A+ L   M+      G  C P+ VTY T+I G CK   + KA E+F  +K  +  +PD
Sbjct: 223 EKAVELLGGMS------GFGCLPDIVTYNTLIKGFCKSNELKKANEMFDDVKSSSGCSPD 276

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VVTY S+I G+C A    EA+ LL +M+  G+ P  VTFNV++D   K G+M  A  +  
Sbjct: 277 VVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGYAKAGEMHTAEEIRG 336

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            MI  G  P+  TF++L+DG+C  G+VN    L+  M + G     F+Y
Sbjct: 337 KMISFGCFPDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTY 385



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 122/257 (47%), Gaps = 8/257 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD + +     P + ++  +     K         L   +   G++P   T+N+L++ +
Sbjct: 263 MFDDVKSSSGCSPDVVTYTSMISGYCKAGKMQEASVLLDDMLRLGIYPTNVTFNVLVDGY 322

Query: 153 CKMGRVSHGFVVLGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
            K G +     + G+++   CF PD V FTSLI G C   ++ +   L+ ++ A G  PN
Sbjct: 323 AKAGEMHTAEEIRGKMISFGCF-PDVVTFTSLIDGYCRVGQVNQGFRLWEEMNARGMFPN 381

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
             TYS LIN LC+    + A  L  ++A+ +        P    Y  +IDG CK G V++
Sbjct: 382 AFTYSILINALCKENRLLKARELLGQLASKD------IIPQPFMYNPVIDGFCKAGKVNE 435

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  +  +M+ K   PD +T+  LI G C      EA  +  +M+  G  PD +T + ++ 
Sbjct: 436 AIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLS 495

Query: 332 ELCKNGKMDEASRLLEL 348
            L K G   EA  L ++
Sbjct: 496 CLLKAGMAKEAYHLNQI 512



 Score =  108 bits (269), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 67/220 (30%), Positives = 112/220 (50%), Gaps = 7/220 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D ML +   P  +T FN+L    AK     T   +  ++ S G FPD+ T+  
Sbjct: 294 QEASVLLDDMLRLGIYPTNVT-FNVLVDGYAKAGEMHTAEEIRGKMISFGCFPDVVTFTS 352

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +C++G+V+ GF +   +      P+A  ++ LI  LC E+R+++A  L  +L +  
Sbjct: 353 LIDGYCRVGQVNQGFRLWEEMNARGMFPNAFTYSILINALCKENRLLKARELLGQLASKD 412

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P    Y+ +I+G C+ G    A+ + EEM          CKP+ +T+T +I G C +G
Sbjct: 413 IIPQPFMYNPVIDGFCKAGKVNEAIVIVEEMEKKK------CKPDKITFTILIIGHCMKG 466

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            + +A  +F +M     +PD +T +SL+     A    EA
Sbjct: 467 RMFEAVSIFHKMVAIGCSPDKITVSSLLSCLLKAGMAKEA 506



 Score = 85.1 bits (209), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 84/170 (49%), Gaps = 1/170 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+ F +++ M N R   P   ++++L   L K         L  +L S  + P  + YN 
Sbjct: 364 NQGFRLWEEM-NARGMFPNAFTYSILINALCKENRLLKARELLGQLASKDIIPQPFMYNP 422

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G+V+   V++  + +    PD + FT LI G C + R+ EA ++F K+ A G
Sbjct: 423 VIDGFCKAGKVNEAIVIVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIG 482

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
           C P+ IT S+L++ L + G    A +L +    G    G   +  T   T
Sbjct: 483 CSPDKITVSSLLSCLLKAGMAKEAYHLNQIAHKGQINDGAPLETKTANVT 532


>gi|356509602|ref|XP_003523536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Glycine max]
          Length = 598

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 8/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +F  ++ +R  P   T  N+L   L +    D    L   L S G  PD+ TYN L
Sbjct: 159 DAVVLFRELIRLRYKPVTYT-VNILMRGLCRAGEIDEAFRLLNDLRSFGCLPDVITYNTL 217

Query: 149 INCFCKMGRVSHGFVVLGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           I+  C++  V     +L  + L   F PD V++T++I G C  S++ E   LF ++   G
Sbjct: 218 IHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSG 277

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN  T++ LI G  + G    AL L+E+M          C P+  T+T++I+G  + G
Sbjct: 278 TAPNTFTFNALIGGFGKLGDMASALALYEKMLVQG------CVPDVATFTSLINGYFRLG 331

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V +A +++ +M DKNI   + T++ L+ G C  N  ++A  +L  + +  + P    +N
Sbjct: 332 QVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARDILRLLNESDIVPQPFIYN 391

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D  CK+G +DEA++++  M +    P+  TF+ L+ G C+ GR+  A  +F  M ++
Sbjct: 392 PVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAIGIFHKMLAV 451

Query: 388 GC 389
           GC
Sbjct: 452 GC 453



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 154/311 (49%), Gaps = 7/311 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           PN  F   ++  +         +++LL   L ++  + T   ++  +   G  PD     
Sbjct: 51  PNLGFKFVEFCRHKLHMSHSYLTYSLLLRSLCRSNLHHTAKVVYDWMRCDGQIPDNRLLG 110

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            L+  +  +GR+     +L  +  +    +AV +  L   L  ++++++A  LF +L   
Sbjct: 111 FLVWSYAIVGRLDVSRELLADVQCNNVGVNAVVYNDLFNVLIRQNKVVDAVVLFRELIRL 170

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
             KP   T + L+ GLCR G    A  L  ++ +    FG  C P+ +TY T+I GLC+ 
Sbjct: 171 RYKPVTYTVNILMRGLCRAGEIDEAFRLLNDLRS----FG--CLPDVITYNTLIHGLCRI 224

Query: 267 GFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
             VD+A+ L  ++  +    PDVV+Y ++I G+C  +   E N L  EM+  G  P+  T
Sbjct: 225 NEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNLLFGEMIRSGTAPNTFT 284

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++    K G M  A  L E M+++G  P+ +TF++L++G+   G+V+ A +++  M 
Sbjct: 285 FNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYFRLGQVHQAMDMWHKMN 344

Query: 386 SMGCKHTVFSY 396
                 T++++
Sbjct: 345 DKNIGATLYTF 355



 Score =  135 bits (339), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 134/261 (51%), Gaps = 7/261 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNILINCFCKMGRVSHGFV 163
           P + ++N L   L +    D   SL K +   G F PD+ +Y  +I+ +CK  ++  G +
Sbjct: 209 PDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCKFSKMEEGNL 268

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + G ++RS   P+   F +LI G      +  A AL+ K+   GC P+V T+++LING  
Sbjct: 269 LFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGCVPDVATFTSLINGYF 328

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G    A++++ +M + N            T++ ++ GLC    + KA+++   + + +
Sbjct: 329 RLGQVHQAMDMWHKMNDKN------IGATLYTFSVLVSGLCNNNRLHKARDILRLLNESD 382

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P    YN +I G+C + + +EAN ++ EM     +PD +TF +++   C  G+M EA 
Sbjct: 383 IVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCKPDKLTFTILIIGHCMKGRMPEAI 442

Query: 344 RLLELMILRGVNPNTSTFSTL 364
            +   M+  G  P+  T + L
Sbjct: 443 GIFHKMLAVGCAPDEITVNNL 463



 Score =  131 bits (330), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 143/286 (50%), Gaps = 15/286 (5%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N LF  L +       + LF+ L      P  YT NIL+   C+ G +   F +L  + 
Sbjct: 144 YNDLFNVLIRQNKVVDAVVLFRELIRLRYKPVTYTVNILMRGLCRAGEIDEAFRLLNDLR 203

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLCRTGHT 228
                PD + + +LI GLC  + +  A +L  ++   G   P+V++Y+T+I+G C+    
Sbjct: 204 SFGCLPDVITYNTLIHGLCRINEVDRARSLLKEVCLNGEFAPDVVSYTTIISGYCK---- 259

Query: 229 IVALNLFEEMANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 F +M  GN  FG + +    PNT T+  +I G  K G +  A  L+ +M  +  
Sbjct: 260 ------FSKMEEGNLLFGEMIRSGTAPNTFTFNALIGGFGKLGDMASALALYEKMLVQGC 313

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV T+ SLI+G+      ++A  +  +M D+ +   + TF+V++  LC N ++ +A  
Sbjct: 314 VPDVATFTSLINGYFRLGQVHQAMDMWHKMNDKNIGATLYTFSVLVSGLCNNNRLHKARD 373

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +L L+    + P    ++ ++DG+C +G V+ A ++   ME   CK
Sbjct: 374 ILRLLNESDIVPQPFIYNPVIDGYCKSGNVDEANKIVAEMEVNRCK 419


>gi|222623943|gb|EEE58075.1| hypothetical protein OsJ_08937 [Oryza sativa Japonica Group]
          Length = 933

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 100/318 (31%), Positives = 160/318 (50%), Gaps = 12/318 (3%)

Query: 77  SGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST 136
           +G GD  A     A  + D M   +  P  +  +N L     +    D    +   +   
Sbjct: 180 AGFGDTPA-----ALSVADRM-TAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEA 233

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+ P++ TY   I  +C+   V   F +   ++R+    D V  ++L+ GLC + R  EA
Sbjct: 234 GVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEA 293

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
            ALF ++   G  PN +TY TLI+ L + G     L+L  EM +     GVV   + VTY
Sbjct: 294 YALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVS----RGVVM--DLVTY 347

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T ++D L K+G  D+ K+        N++P+ VTY  LI   C A++ +EA  +L+EM +
Sbjct: 348 TALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEE 407

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P+VVTF+ +++   K G +D+A+    +M  RG+NPN  T+ TL+DGF      + 
Sbjct: 408 KSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDA 467

Query: 377 AKELFVSMESMGCKHTVF 394
           A E++  M   G K   F
Sbjct: 468 ALEVYHDMLCEGVKVNKF 485



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 141/311 (45%), Gaps = 29/311 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++  L   L K    D V    +   S  L P+  TY +LI+  CK   V     VL 
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLL 403

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +     +P+ V F+S+I G      + +A      +K  G  PNV+TY TLI+G  +  
Sbjct: 404 EMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQ 463

Query: 227 HTIVALNLFEEM---------------ANG---NGKF-----------GVVCKPNTVTYT 257
               AL ++ +M                NG   NGK            G     + V YT
Sbjct: 464 GQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYT 523

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDGL K G +  A +   ++ D+N+ PD V YN  I+  C    + EA   L EM + 
Sbjct: 524 TLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNM 583

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD  T+N ++   C+ G+  +A +LL  M +  + PN  T++TL+ G   TG V  A
Sbjct: 584 GLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA 643

Query: 378 KELFVSMESMG 388
           K L   M S G
Sbjct: 644 KYLLNEMVSAG 654



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 142/327 (43%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N+   CL     +    S    + + GL PD  TYN +I   C+ G  +    +
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT---------- 214
           L  +  S   P+ + + +L+ GL     + +A  L  ++ + G  P+ +T          
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 215 -------------------------YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                    Y+TL+  LC  G T  A  + EEM       G   
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEM------LGSGI 725

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+T+T+  +I G CK   +D A   + QM  +NI+P++ T+N+L+ G        EA  
Sbjct: 726 APDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGT 785

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +LIEM   G++P+ +T++++     K     EA RL   M+ +G  P  ST++ L+  F 
Sbjct: 786 VLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFT 845

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  AKELF  M+  G   T  +Y
Sbjct: 846 KAGMMTQAKELFKDMQKRGVHPTSCTY 872



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 159/384 (41%), Gaps = 57/384 (14%)

Query: 47  TTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPP 106
            T+     ++R    D ASL   L   C+      +  + P  A         +R S P 
Sbjct: 57  ATSGLAAAAIRFRPADPASLNALLYSHCR------LRLLRPAIAL--------LRSSRPT 102

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH------ 160
             ++N+L   L+   H   VL+    +   G+  D  T N L+   C+ G+V        
Sbjct: 103 TVAYNILLAALSDHAHAPAVLA---EMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD 159

Query: 161 ---------------------GF-------VVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
                                GF        V  R+       D V + +L+ G C   +
Sbjct: 160 RAGGITPWMSSAGTLSLLDIAGFGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQ 219

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           +  A  +   +K  G  PNV TY+  I   CRT     A +L+E M     + GV+   +
Sbjct: 220 VDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFDLYEGMV----RNGVLL--D 273

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            VT + ++ GLC++G   +A  LF +M      P+ VTY +LI     A    E   LL 
Sbjct: 274 VVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLAKAGRGKELLSLLG 333

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
           EM+ +GV  D+VT+  +MD L K GK DE    L   +   ++PN  T++ L+D  C   
Sbjct: 334 EMVSRGVVMDLVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAH 393

Query: 373 RVNHAKELFVSMESMGCKHTVFSY 396
            V+ A+++ + ME       V ++
Sbjct: 394 NVDEAEQVLLEMEEKSISPNVVTF 417



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + + M++   SP  LT   +L  C ++++  D +L + + + + GL  D+  YN L
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQAC-SQSRRLDVILDIHEWMMNAGLHADITVYNTL 700

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  G      VVL  +L S   PD + F +LI G C  S +  A A + ++     
Sbjct: 701 LQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNI 760

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+ T++TL+ GL   G    A  +  EM     K G+  +PN +TY  +  G  K+  
Sbjct: 761 SPNIATFNTLLGGLESVGRIGEAGTVLIEME----KSGL--EPNNLTYDILATGHGKQSN 814

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A  L+ +M  K   P V TYN+LI  F  A    +A  L  +M  +GV P   T+++
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDI 874

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           ++    +     E  + L+ M  +G +P+  T S +   F   G    A+ L 
Sbjct: 875 LVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F+ +     K    D      + +   G+ P++ TY  LI+ F K         V
Sbjct: 412 PNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEV 471

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L      +     SL+ GL    +I EA ALF      G   + + Y+TLI+GL +
Sbjct: 472 YHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFK 531

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +E+ + N        P+ V Y   I+ LC  G   +AK    +M++  +
Sbjct: 532 AGDMPTAFKFGQELMDRN------MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGL 585

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TYN++I   C   +  +A  LL EM    ++P+++T+N ++  L   G +++A  
Sbjct: 586 KPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M+  G +P++ T   ++     + R++   ++   M + G    +  Y
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVY 697



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 41/326 (12%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           +  M+  R   P + ++  L     K +  D  L ++  +   G+  + +  + L+N   
Sbjct: 436 YKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLR 495

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           + G++     +      S  + D V +T+LI GL     +  A     +L      P+ +
Sbjct: 496 QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAV 555

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y+  IN LC  G    A +   EM N      +  KP+  TY T+I   C++G   KA 
Sbjct: 556 VYNVFINCLCMLGKFKEAKSFLTEMRN------MGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------------------- 313
           +L  +MK  +I P+++TYN+L+ G        +A  LL E                    
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 314 ---------------MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                          MM+ G+  D+  +N ++  LC +G   +A+ +LE M+  G+ P+T
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDT 729

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
            TF+ L+ G C +  +++A   +  M
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQM 755


>gi|75191658|sp|Q9M9X9.1|PPR18_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06710, mitochondrial; Flags: Precursor
 gi|7523709|gb|AAF63148.1|AC011001_18 Hypothetical protein [Arabidopsis thaliana]
          Length = 987

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 45/337 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 481 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 540

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     TP+ V +T+LI       ++  A  LF  + + GC PN++TYS LI+G C+
Sbjct: 541 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 600

Query: 225 TGHTIVALNLFEEMANGNG---------------------KFGVV--------------- 248
            G    A  +FE M                           +G +               
Sbjct: 601 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 660

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C+PN + Y  +IDGLCK G +D+A+E+  +M +      + TY+SLI  + 
Sbjct: 661 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 720

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                + A+ +L +M++    P+VV +  ++D LCK GK DEA +L+++M  +G  PN  
Sbjct: 721 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 780

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ ++DGF + G++    EL   M S G      +Y
Sbjct: 781 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 817



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 143/303 (47%), Gaps = 11/303 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D M +M    P    ++ L   L K    D    +   ++  G    LYTY+ 
Sbjct: 656 EEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K+ R      VL ++L +   P+ V +T +I GLC   +  EA  L   ++  G
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PNV+TY+ +I+G    G     L L E M    G  GV   PN VTY  +ID  CK G
Sbjct: 775 CQPNVVTYTAMIDGFGMIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNG 828

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  +MK  +       Y  +I GF    ++ E+  LL E+      P +  + 
Sbjct: 829 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYR 886

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +++D L K  +++ A RLLE +          +ST+++L++  CL  +V  A +LF  M 
Sbjct: 887 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 946

Query: 386 SMG 388
             G
Sbjct: 947 KKG 949



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 95  DYMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           D++  MR +   P  +T   LL GCL K K       +   +   G +P    +N L++ 
Sbjct: 323 DFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 381

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME------AAALFTKLKA 205
           +C  G  S+ + +L ++++    P  V +  LI  +C +   +       A   ++++ A
Sbjct: 382 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLA 441

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   N I  S+    LC  G    A ++  EM  G G       P+T TY+ +++ LC 
Sbjct: 442 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI-GQGFI-----PDTSTYSKVLNYLCN 495

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              ++ A  LF +MK   +  DV TY  ++  FC A    +A     EM + G  P+VVT
Sbjct: 496 ASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 555

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +  ++    K  K+  A+ L E M+  G  PN  T+S L+DG C  G+V  A ++F  M
Sbjct: 556 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 614



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 139/333 (41%), Gaps = 50/333 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 233 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 292

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST------- 217
              +    F PD V +T LI GLC  S   EA     +++A  C PNV+TYST       
Sbjct: 293 ---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 349

Query: 218 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                       L++  C +G    A  L ++M     K G + 
Sbjct: 350 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV----KCGHM- 404

Query: 250 KPNTVTYTTIIDGLCKE------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
            P  V Y  +I  +C +        +D A++ + +M    +  + +  +S     C A  
Sbjct: 405 -PGYVVYNILIGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 463

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           + +A  ++ EM+ QG  PD  T++ +++ LC   KM+ A  L E M   G+  +  T++ 
Sbjct: 464 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 523

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++D FC  G +  A++ F  M  +GC   V +Y
Sbjct: 524 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 556



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 127/325 (39%), Gaps = 81/325 (24%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK--- 202
           N+L+   C+ G  S     LGR+    F P    +  LI+      R+  A+ +  +   
Sbjct: 204 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 263

Query: 203 ---------LKAFG---CK-----------------PNVITYSTLINGLCRTGHTIVALN 233
                    L+ F    CK                 P+ + Y+ LI+GLC         +
Sbjct: 264 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEA-------S 316

Query: 234 LFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           LFEE M   N      C PN VTY+T++ G   +  + + K +   M  +   P    +N
Sbjct: 317 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 376

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE-------------------- 332
           SL+H +C + D + A  LL +M+  G  P  V +N+++                      
Sbjct: 377 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNCDLLDLAEKAY 436

Query: 333 ---------------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
                                LC  GK ++A  ++  MI +G  P+TST+S +++  C  
Sbjct: 437 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 496

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            ++  A  LF  M+  G    V++Y
Sbjct: 497 SKMELAFLLFEEMKRGGLVADVYTY 521



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 8/234 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +          +T L L +R+ S G+ P+  TY +
Sbjct: 761 DEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 819

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G +     +L  + ++ +      +  +I+G   E   +E+  L  ++    
Sbjct: 820 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDD 877

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  LI+ L +     +AL L EE+A     F       + TY ++I+ LC   
Sbjct: 878 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLCLAN 933

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            V+ A +LF +M  K + P++ ++ SLI G    +  +EA  LL++ +   V P
Sbjct: 934 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA-LLLLDFISHMVCP 986


>gi|55709857|gb|AAV58825.1| hypothetical protein [Arabidopsis thaliana]
          Length = 946

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 155/337 (45%), Gaps = 45/337 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  ++++ +   L      +    LF+ +   GL  D+YTY I+++ FCK G +      
Sbjct: 440 PDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKW 499

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +     TP+ V +T+LI       ++  A  LF  + + GC PN++TYS LI+G C+
Sbjct: 500 FNEMREVGCTPNVVTYTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCK 559

Query: 225 TGHTIVALNLFEEMANGNG---------------------KFGVV--------------- 248
            G    A  +FE M                           +G +               
Sbjct: 560 AGQVEKACQIFERMCGSKDVPDVDMYFKQYDDNSERPNVVTYGALLDGFCKSHRVEEARK 619

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C+PN + Y  +IDGLCK G +D+A+E+  +M +      + TY+SLI  + 
Sbjct: 620 LLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSSLIDRYF 679

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                + A+ +L +M++    P+VV +  ++D LCK GK DEA +L+++M  +G  PN  
Sbjct: 680 KVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKGCQPNVV 739

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           T++ ++DGF + G++    EL   M S G      +Y
Sbjct: 740 TYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTY 776



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 143/303 (47%), Gaps = 11/303 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + D M +M    P    ++ L   L K    D    +   ++  G    LYTY+ 
Sbjct: 615 EEARKLLDAM-SMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 673

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ + K+ R      VL ++L +   P+ V +T +I GLC   +  EA  L   ++  G
Sbjct: 674 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 733

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C+PNV+TY+ +I+G    G     L L E M    G  GV   PN VTY  +ID  CK G
Sbjct: 734 CQPNVVTYTAMIDGFGMIGKIETCLELLERM----GSKGVA--PNYVTYRVLIDHCCKNG 787

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +D A  L  +MK  +       Y  +I GF    ++ E+  LL E+      P +  + 
Sbjct: 788 ALDVAHNLLEEMKQTHWPTHTAGYRKVIEGF--NKEFIESLGLLDEIGQDDTAPFLSVYR 845

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +++D L K  +++ A RLLE +          +ST+++L++  CL  +V  A +LF  M 
Sbjct: 846 LLIDNLIKAQRLEMALRLLEEVATFSATLVDYSSTYNSLIESLCLANKVETAFQLFSEMT 905

Query: 386 SMG 388
             G
Sbjct: 906 KKG 908



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 139/299 (46%), Gaps = 16/299 (5%)

Query: 95  DYMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           D++  MR +   P  +T   LL GCL K K       +   +   G +P    +N L++ 
Sbjct: 282 DFLNRMRATSCLPNVVTYSTLLCGCLNK-KQLGRCKRVLNMMMMEGCYPSPKIFNSLVHA 340

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME------AAALFTKLKA 205
           +C  G  S+ + +L ++++    P  V +  LI  +C +   +       A   ++++ A
Sbjct: 341 YCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLA 400

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G   N I  S+    LC  G    A ++  EM  G G       P+T TY+ +++ LC 
Sbjct: 401 AGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMI-GQGFI-----PDTSTYSKVLNYLCN 454

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
              ++ A  LF +MK   +  DV TY  ++  FC A    +A     EM + G  P+VVT
Sbjct: 455 ASKMELAFLLFEEMKRGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVT 514

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +  ++    K  K+  A+ L E M+  G  PN  T+S L+DG C  G+V  A ++F  M
Sbjct: 515 YTALIHAYLKAKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERM 573



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 81/333 (24%), Positives = 139/333 (41%), Gaps = 50/333 (15%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  +++N L     K    D+   + + ++   L  D +T        CK+G+      +
Sbjct: 192 PSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKVGKWREALTL 251

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST------- 217
              +    F PD V +T LI GLC  S   EA     +++A  C PNV+TYST       
Sbjct: 252 ---VETENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLN 308

Query: 218 ----------------------------LINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                       L++  C +G    A  L ++M     K G + 
Sbjct: 309 KKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYKLLKKMV----KCGHM- 363

Query: 250 KPNTVTYTTIIDGLCKE------GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
            P  V Y  +I  +C +        +D A++ + +M    +  + +  +S     C A  
Sbjct: 364 -PGYVVYNILIGSICGDKDSLNFDLLDLAEKAYSEMLAAGVVLNKINVSSFTRCLCSAGK 422

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           + +A  ++ EM+ QG  PD  T++ +++ LC   KM+ A  L E M   G+  +  T++ 
Sbjct: 423 YEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRGGLVADVYTYTI 482

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++D FC  G +  A++ F  M  +GC   V +Y
Sbjct: 483 MVDSFCKAGLIEQARKWFNEMREVGCTPNVVTY 515



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 77/325 (23%), Positives = 127/325 (39%), Gaps = 81/325 (24%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK--- 202
           N+L+   C+ G  S     LGR+    F P    +  LI+      R+  A+ +  +   
Sbjct: 163 NVLVRKHCRNGSFSIALEELGRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSL 222

Query: 203 ---------LKAFG---CK-----------------PNVITYSTLINGLCRTGHTIVALN 233
                    L+ F    CK                 P+ + Y+ LI+GLC         +
Sbjct: 223 ANLRMDGFTLRCFAYSLCKVGKWREALTLVETENFVPDTVFYTKLISGLCEA-------S 275

Query: 234 LFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           LFEE M   N      C PN VTY+T++ G   +  + + K +   M  +   P    +N
Sbjct: 276 LFEEAMDFLNRMRATSCLPNVVTYSTLLCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFN 335

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE-------------------- 332
           SL+H +C + D + A  LL +M+  G  P  V +N+++                      
Sbjct: 336 SLVHAYCTSGDHSYAYKLLKKMVKCGHMPGYVVYNILIGSICGDKDSLNFDLLDLAEKAY 395

Query: 333 ---------------------LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
                                LC  GK ++A  ++  MI +G  P+TST+S +++  C  
Sbjct: 396 SEMLAAGVVLNKINVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNA 455

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            ++  A  LF  M+  G    V++Y
Sbjct: 456 SKMELAFLLFEEMKRGGLVADVYTY 480



 Score = 78.2 bits (191), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/234 (24%), Positives = 109/234 (46%), Gaps = 8/234 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA+ +   M+  +   P + ++  +          +T L L +R+ S G+ P+  TY +
Sbjct: 720 DEAYKLMQ-MMEEKGCQPNVVTYTAMIDGFGMIGKIETCLELLERMGSKGVAPNYVTYRV 778

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G +     +L  + ++ +      +  +I+G   E   +E+  L  ++    
Sbjct: 779 LIDHCCKNGALDVAHNLLEEMKQTHWPTHTAGYRKVIEGFNKE--FIESLGLLDEIGQDD 836

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P +  Y  LI+ L +     +AL L EE+A     F       + TY ++I+ LC   
Sbjct: 837 TAPFLSVYRLLIDNLIKAQRLEMALRLLEEVAT----FSATLVDYSSTYNSLIESLCLAN 892

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            V+ A +LF +M  K + P++ ++ SLI G    +  +EA  LL++ +   V P
Sbjct: 893 KVETAFQLFSEMTKKGVIPEMQSFCSLIKGLFRNSKISEA-LLLLDFISHMVCP 945


>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
          Length = 683

 Score =  162 bits (409), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 158/339 (46%), Gaps = 37/339 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            A  + D M       P   S+N++   LA+   +   L L++R+    + P  +T+ + 
Sbjct: 124 RALHLLDQMPRRFAVSPSFRSYNVVLSTLARADCHADALLLYRRMLRDRVPPTTFTFGVA 183

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
               C++GR      +L  + R    PDAV + ++I  L A+  + EAA L  ++   GC
Sbjct: 184 ARALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLLMGC 243

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK--- 265
             +V T++ L+ GLC  G    A  L + M          C P+ VTY  ++ GLC+   
Sbjct: 244 AADVNTFNDLVLGLCGLGRVREAARLVDRMMTQG------CMPSVVTYGFLLQGLCRTRQ 297

Query: 266 ----------------------------EGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                                       EG + +A EL+  M  K   PDV TY+ L+HG
Sbjct: 298 ADEACAMLGRLPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHG 357

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            C    +  A  +L EM ++G  P++VT++ ++   C+NG  D+A  +L+ M+ +G + N
Sbjct: 358 LCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMN 417

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  ++ ++   C  G+++ A  L   M+S GCK  + +Y
Sbjct: 418 SQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTY 456



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 85/282 (30%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           GCL + K       L++ + S G  PD++TY+IL++  CK+GR      +L  +      
Sbjct: 322 GCLTEGK-LARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCA 380

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P+ V +++L+   C      +A A+  ++ A G   N   Y+ +I  LC+ G    A  L
Sbjct: 381 PNIVTYSTLLHSFCRNGMWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRL 440

Query: 235 FEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            +EM +        CKP+  TY T+I  LC    +++A+ +F  + ++ +  + +TYN+L
Sbjct: 441 VQEMKSQG------CKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTL 494

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           IH       W E   L  EM+  G Q DV+++N ++  LCK G +D +  LLE M+ +G+
Sbjct: 495 IHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGI 554

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            PN  +++ L++  C  G+V  A EL   M + G    + +Y
Sbjct: 555 KPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTY 596



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 81/300 (27%), Positives = 159/300 (53%), Gaps = 6/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+  +  PP + ++++L   L K   + + + +   +   G  P++ TY+ L++ FC+ G
Sbjct: 338 MMGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNG 397

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
                  +L ++L   F+ ++  +  +I  LC + ++ +A  L  ++K+ GCKP++ TY+
Sbjct: 398 MWDDARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYN 457

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I  LC       A ++F  +     + GVV   N +TY T+I  L + G   +   L 
Sbjct: 458 TMIYHLCNNDLMEEAEHIFRNLI----EEGVVA--NGITYNTLIHALLRNGRWQEGLRLA 511

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M       DV++YN LI   C   + + +  LL EM+ +G++P+  ++N++++ELCK 
Sbjct: 512 SEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCKA 571

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK+ +A  L + M+ +G+ P+  T++TL++G C  G  + A  L   + +      + +Y
Sbjct: 572 GKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTY 631



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/261 (30%), Positives = 132/261 (50%), Gaps = 8/261 (3%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            +N +   L K    D    L + + S G  PD+ TYN +I   C    +     +   +
Sbjct: 420 GYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNL 479

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +      + + + +LI  L    R  E   L +++   GC+ +VI+Y+ LI  LC+ G+ 
Sbjct: 480 IEEGVVANGITYNTLIHALLRNGRWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNV 539

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             ++ L EEM           KPN  +Y  +I+ LCK G V  A EL  +M ++ + PD+
Sbjct: 540 DRSMALLEEMVTKG------IKPNNFSYNMLINELCKAGKVRDALELSKEMLNQGLTPDI 593

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           VTYN+LI+G C    W  A   L+E + ++ V PD+VT+N+++   CK   +D+A+ LL+
Sbjct: 594 VTYNTLINGLCKVG-WTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAMLLD 652

Query: 348 LMILRGVNPNTSTFSTLMDGF 368
             I  G+ PN  T+  ++  F
Sbjct: 653 KAISGGIVPNERTWGMMVQNF 673



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 6/232 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L      +    +F+ L   G+  +  TYN LI+   + GR   G  +
Sbjct: 451 PDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNGRWQEGLRL 510

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L      D +++  LIK LC E  +  + AL  ++   G KPN  +Y+ LIN LC+
Sbjct: 511 ASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVTKGIKPNNFSYNMLINELCK 570

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL L +EM N          P+ VTY T+I+GLCK G+   A  L  ++ ++N+
Sbjct: 571 AGKVRDALELSKEMLNQG------LTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENV 624

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           +PD+VTYN LI   C     ++A  LL + +  G+ P+  T+ +++    + 
Sbjct: 625 HPDIVTYNILISWHCKVRLLDDAAMLLDKAISGGIVPNERTWGMMVQNFVRQ 676



 Score = 43.5 bits (101), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 21/92 (22%), Positives = 45/92 (48%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K       L+L ++L +  + PD+ TYNILI+  CK+  +    ++
Sbjct: 591 PDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDIVTYNILISWHCKVRLLDDAAML 650

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           L + +     P+   +  +++    ++  +E 
Sbjct: 651 LDKAISGGIVPNERTWGMMVQNFVRQTVNLEG 682


>gi|357118215|ref|XP_003560853.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Brachypodium distachyon]
          Length = 597

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 106/337 (31%), Positives = 157/337 (46%), Gaps = 27/337 (8%)

Query: 69  FLKERCKSSGQGDITAI-----TPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHY 123
            +K  CK+   GD  ++      P    C    MLN           N++ G     +  
Sbjct: 178 LVKGLCKAGRVGDALSVLDGMSGPESDVCPDVVMLN-----------NIVDGLCKTGRLQ 226

Query: 124 DTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTS 182
             V  + +R+ S  G  P+  TYN L + FC+ G V     ++ ++ +   TP+AV   +
Sbjct: 227 QAVKFVEERMRSVHGCAPNTVTYNCLAHAFCRAGNVGMACELVAKMEKERVTPNAVTLNT 286

Query: 183 LIKGLCAESRIMEAAALFTKLKAFG--CKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
           ++ GLC   R+  A   F + +      + N +TYSTL+     T +  VA+ LF EM +
Sbjct: 287 IVGGLCWVGRVGAALEFFREKRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVD 346

Query: 241 -GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
            GN        P+ + Y T+I GL + G +D A  +   MK      D   YN LI GFC
Sbjct: 347 EGN-------SPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFC 399

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                NEA  LL EM + G+QPDV T+N ++  LCK G       LL  MI  G  P+  
Sbjct: 400 RRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCRPSVV 459

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           TF TL+ G+C  G+++ A  +F SM+  G +     Y
Sbjct: 460 TFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIY 496



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 94/303 (31%), Positives = 145/303 (47%), Gaps = 17/303 (5%)

Query: 103 SPPPLTS-FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHG 161
           +PPP TS FN L   LA+      +  LF  +    + P++ TY IL+   CK GRV   
Sbjct: 132 APPPDTSAFNTLLDALAQAGDLPGMTQLFASMRDASVRPNVVTYGILVKGLCKAGRVGDA 191

Query: 162 FVVLGRI--LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK--LKAFGCKPNVITYST 217
             VL  +    S   PD V   +++ GLC   R+ +A     +      GC PN +TY+ 
Sbjct: 192 LSVLDGMSGPESDVCPDVVMLNNIVDGLCKTGRLQQAVKFVEERMRSVHGCAPNTVTYNC 251

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           L +  CR G+  +A  L  +M            PN VT  TI+ GLC  G V  A E F 
Sbjct: 252 LAHAFCRAGNVGMACELVAKMEKER------VTPNAVTLNTIVGGLCWVGRVGAALEFFR 305

Query: 278 QMKDKNINPD----VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +   + + P+     VTY++L+  F + N+   A  L  EM+D+G  PD + +  ++  L
Sbjct: 306 E--KRTVWPEARGNAVTYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGL 363

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
            + G++D+A  +   M   G   +   ++ L+ GFC   R+N A EL   M+  G +  V
Sbjct: 364 TQAGRLDDAWSMATSMKKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDV 423

Query: 394 FSY 396
           ++Y
Sbjct: 424 YTY 426



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 82/271 (30%), Positives = 135/271 (49%), Gaps = 6/271 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           +++ L G    T +    + LF  +   G  PD   Y  +I+   + GR+   + +   +
Sbjct: 320 TYSTLVGAFLHTNNVGVAMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSM 379

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++ F  DA A+  LI G C   R+ EA  L  ++K  G +P+V TY+TL++GLC+ G  
Sbjct: 380 KKAGFQLDAKAYNILIGGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDF 439

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
           +    L  +M +G       C+P+ VT+ T+I G CK G +D+A  +F  M +  I P+ 
Sbjct: 440 LAVDELLGKMIDGG------CRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNT 493

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V YN+LI   C + D + A  L  EM ++ V  +V TFN ++  L      ++A  L++L
Sbjct: 494 VIYNTLIDFLCKSRDTSLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDL 553

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           M      P+  T   LM+   + G  +  K 
Sbjct: 554 MREGRCTPDYVTIDILMEWLPVIGETDRLKH 584



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 79/258 (30%), Positives = 128/258 (49%), Gaps = 7/258 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F  M++   SP  +  F ++ G L +    D   S+   +   G   D   YNILI
Sbjct: 337 AMELFHEMVDEGNSPDAIMYFTMISG-LTQAGRLDDAWSMATSMKKAGFQLDAKAYNILI 395

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             FC+  R++  + +LG +  +   PD   + +L+ GLC     +    L  K+   GC+
Sbjct: 396 GGFCRRKRLNEAYELLGEMKEAGLQPDVYTYNTLLSGLCKAGDFLAVDELLGKMIDGGCR 455

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           P+V+T+ TLI+G C+ G    AL +F  M           +PNTV Y T+ID LCK    
Sbjct: 456 PSVVTFGTLIHGYCKVGQIDEALRIFRSMDESG------IQPNTVIYNTLIDFLCKSRDT 509

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A ELF +M++K++  +V T+N+L+ G    N   +A  L+  M +    PD VT +++
Sbjct: 510 SLAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRCTPDYVTIDIL 569

Query: 330 MDELCKNGKMDEASRLLE 347
           M+ L   G+ D     ++
Sbjct: 570 MEWLPVIGETDRLKHFMQ 587



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 12/289 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL----YTYNILINCFCKMGRVSH 160
           P   + N + G L         L  F+   +  ++P+      TY+ L+  F     V  
Sbjct: 279 PNAVTLNTIVGGLCWVGRVGAALEFFREKRT--VWPEARGNAVTYSTLVGAFLHTNNVGV 336

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              +   ++    +PDA+ + ++I GL    R+ +A ++ T +K  G + +   Y+ LI 
Sbjct: 337 AMELFHEMVDEGNSPDAIMYFTMISGLTQAGRLDDAWSMATSMKKAGFQLDAKAYNILIG 396

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           G CR      A  L  EM           +P+  TY T++ GLCK G      EL  +M 
Sbjct: 397 GFCRRKRLNEAYELLGEMKEAG------LQPDVYTYNTLLSGLCKAGDFLAVDELLGKMI 450

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
           D    P VVT+ +LIHG+C     +EA  +   M + G+QP+ V +N ++D LCK+    
Sbjct: 451 DGGCRPSVVTFGTLIHGYCKVGQIDEALRIFRSMDESGIQPNTVIYNTLIDFLCKSRDTS 510

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            A  L + M  + V  N +TF+ L+ G         A EL   M    C
Sbjct: 511 LAIELFDEMREKHVPANVTTFNALLKGLRDKNMPEKAFELMDLMREGRC 559


>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
          Length = 376

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 95/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPN   Y+TLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C PN +TY T+I+GLCK     +A  L  ++ DK +NP
Sbjct: 179 KFEDAIRVFREMGT------MHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +   +A  L  ++  +G +PDV   NV++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 77/269 (28%), Positives = 133/269 (49%), Gaps = 6/269 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L     K  + D  L + +     G   D + Y+ +IN  CK   +     VL  +
Sbjct: 96  TYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGM 155

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           ++S   P+A  + +LI GL   S+  +A  +F ++    C PN+ITY+TLINGLC+    
Sbjct: 156 IKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIITYNTLINGLCKNEMF 215

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A NL +E+ +          P  +TY+ ++ GLC +  V+KA +L+ Q+  K   PDV
Sbjct: 216 GEAYNLVKELLDKG------LNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDV 269

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             +N LIHG C       A  L  +M      P++V+ N +M+   K+G +  A  +   
Sbjct: 270 QMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++  G+ P+  +++  + G C   R++ A
Sbjct: 330 ILRNGLEPDIISYNITLKGLCSCNRISDA 358



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 149/304 (49%), Gaps = 8/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  ++  + SP  +    +L G     K  D    L++ + S G    + ++NI++   
Sbjct: 12  VYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEG-NRSVSSFNIMMRGL 69

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G+V     +   + +S F  D++ +  L+ G C    I ++  +    +  G   + 
Sbjct: 70  FDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             YS +INGLC+  +   A+++       NG     CKPN   Y T+I+GL      + A
Sbjct: 130 FAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNAHVYNTLINGLVGASKFEDA 183

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F +M   + +P+++TYN+LI+G C    + EA  L+ E++D+G+ P V+T++++M  
Sbjct: 184 IRVFREMGTMHCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKG 243

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC + K+++A +L   +  +G  P+    + L+ G C  G++  A  L+  M    C   
Sbjct: 244 LCLDHKVEKALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPN 303

Query: 393 VFSY 396
           + S+
Sbjct: 304 LVSH 307



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 62  DRAS--LEQFLKERCKSSGQ-------GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           DRA   L   +K  CK +         G + A    +A  +F  M  M  SP  +T +N 
Sbjct: 146 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPNIIT-YNT 204

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K + +    +L K L   GL P + TY++L+   C   +V     +  ++    
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F PD      LI GLC+  ++  A +L+  +  + C PN+++++TL+ G  + G    AL
Sbjct: 265 FKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
            ++  +   NG      +P+ ++Y   + GLC
Sbjct: 325 VIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ ++ ++ +  ++PD V YN++++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN++M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             E  G     F+Y
Sbjct: 119 MAEQKGGVLDAFAY 132



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N+L   L         LSL+  +N     P+L ++N L+  F K G + +  V+
Sbjct: 267 PDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
             RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 327 WARILRNGLEPDIISYNITLKGLCSCNRISDA 358


>gi|226501158|ref|NP_001146427.1| uncharacterized protein LOC100280009 [Zea mays]
 gi|219887141|gb|ACL53945.1| unknown [Zea mays]
          Length = 522

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 161/317 (50%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A      F + D ML+  P P  +T +N+L   L +    D    L   + S  +F
Sbjct: 65  GDLEA-----GFRLRDQMLHDGPKPNIVT-YNVLLSGLCRAGRMDETRVLMDEMASHSMF 118

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TY+IL +   + G       +    L+      A   + L+ GLC + ++ +A  +
Sbjct: 119 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQV 178

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              L   G  P  + Y+TLING C+      A  +FE+M + +       +P+ +TY  +
Sbjct: 179 LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH------IRPDHITYNAL 232

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLCK   V KA++L ++M+   ++P V T+N+LI  +  A    +   +L +M  +G+
Sbjct: 233 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 292

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + DV++F  ++   CKNGK+ EA  +L+ MI + V PN   +++++D +  +G    A  
Sbjct: 293 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFL 352

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M++ G   ++ +Y
Sbjct: 353 LVEKMKNSGVSASIVTY 369



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 152/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   S+N++   L ++      L +F  +   G+ P+  TYN +I+   K G +  GF 
Sbjct: 13  PPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFR 72

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++L     P+ V +  L+ GLC   R+ E   L  ++ +    P+  TYS L +GL 
Sbjct: 73  LRDQMLHDGPKPNIVTYNVLLSGLCRAGRMDETRVLMDEMASHSMFPDGFTYSILFDGLT 132

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           RTG +   L+LF E      K GV+      T + +++GLCK+G V KA+++   +    
Sbjct: 133 RTGESRTMLSLFAESL----KKGVML--GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTG 186

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + P  V YN+LI+G+C   D   A C+  +M  + ++PD +T+N +++ LCK   + +A 
Sbjct: 187 LVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAE 246

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L+  M   GV+P+  TF+TL+D +   G++     +   M+  G K  V S+
Sbjct: 247 DLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISF 299



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 7/279 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AFCIF+ M +    P  +T +N L   L K +       L   +  +G+ P + T+N LI
Sbjct: 210 AFCIFEQMKSRHIRPDHIT-YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 268

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +   G++   F VL  + +     D ++F S++K  C   +I EA A+   +      
Sbjct: 269 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 328

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN   Y+++I+    +G T  A  L E+M N           + VTY  ++ GLC+   +
Sbjct: 329 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG------VSASIVTYNLLLKGLCRSSQI 382

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A+EL   ++++ + PDVV+YN++I   C   D ++A  LL EM   G++P + T++ +
Sbjct: 383 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 442

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +  L   G++ +   L + M+ + V P++S +  ++D +
Sbjct: 443 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 481



 Score =  144 bits (362), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 163/338 (48%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   + D M +    P   T +++LF  L +T    T+LSLF      G+    YT +I
Sbjct: 103 DETRVLMDEMASHSMFPDGFT-YSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 161

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  CK G+V+    VL  ++ +   P  V + +LI G C    +  A  +F ++K+  
Sbjct: 162 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 221

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVV---- 248
            +P+ ITY+ LINGLC+      A +L  EM                +  G  G +    
Sbjct: 222 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 281

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      K + +++ +++   CK G + +A  +   M  K++ P+   YNS+I  +
Sbjct: 282 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 341

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             + D  +A  L+ +M + GV   +VT+N+++  LC++ ++DEA  L+  +  +G+ P+ 
Sbjct: 342 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 401

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++T++   C  G  + A EL   M   G + T+ +Y
Sbjct: 402 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTY 439



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L     + +       +F+++ S  + PD  TYN LIN  CK+  V+    +
Sbjct: 189 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 248

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  + +S   P    F +LI       ++ +   + + ++  G K +VI++ +++   C+
Sbjct: 249 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 308

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + ++M   +        PN   Y +IID   + G  ++A  L  +MK+  +
Sbjct: 309 NGKIPEAVAILDDMIYKD------VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 362

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +  +VTYN L+ G C ++  +EA  L+  + +QG++PDVV++N I+   C  G  D+A  
Sbjct: 363 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 422

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LL+ M   G+ P   T+ TL+      GRV+  + L+  M
Sbjct: 423 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 462


>gi|414869870|tpg|DAA48427.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
 gi|414869871|tpg|DAA48428.1| TPA: hypothetical protein ZEAMMB73_860756 [Zea mays]
          Length = 741

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 101/327 (30%), Positives = 150/327 (45%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L      T   +  + +FK + S G  P++ TY  LI  FCK G+V    V+
Sbjct: 212 PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMVL 271

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++ +   P+ V +T+LI+G C+E  +  A  L   ++A G  PN  T   LI+ LC+
Sbjct: 272 YSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCK 331

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A      +           K N V YT++ID LCK G  D A  L  ++  +  
Sbjct: 332 HGRIEEAQQFLGSLVQKG------IKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEGF 385

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ------------------------ 320
            PD   Y+SLI G C  N   EA  LL +M++ GVQ                        
Sbjct: 386 VPDAHMYSSLIDGLCRENKLLEAISLLNDMIESGVQANAVPFTILIDKHLREFRSDSPKM 445

Query: 321 -----------PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
                      PDVVT+ V +   C++G+M++A  ++  MI  GV PN +T++TL+ G+ 
Sbjct: 446 ISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYA 505

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G V+ A     +M   GCK    SY
Sbjct: 506 NLGLVSQAFSSLKNMIDNGCKPNDESY 532



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 142/290 (48%), Gaps = 9/290 (3%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
            + P     TSF L +    +T  +     LF  +   G     +TY  L+   C  G V
Sbjct: 104 GLAPDSHAYTSFVLGY---CRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCGAGMV 160

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
                V   +      PD+  ++ ++ GLC   R  EA AL T     G  PNV  Y+ L
Sbjct: 161 REAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTDAMGKGFVPNVAVYNAL 220

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I+G C TG   +A+++F+ M +        C PN  TYT +I G CK G V++A  L+ +
Sbjct: 221 IDGYCSTGDLELAIDIFKGMQSKG------CLPNVRTYTQLICGFCKSGKVERAMVLYSR 274

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M +  + P+VVTY +LI G C       A  LL  M   G+ P+  T  V++D LCK+G+
Sbjct: 275 MIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALCKHGR 334

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++EA + L  ++ +G+  N   +++++D  C +G+ + A  L   + + G
Sbjct: 335 IEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEG 384



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/321 (29%), Positives = 142/321 (44%), Gaps = 45/321 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           PP+   N L   LA+      + SL  R+       +L+TY  LIN +C  G +      
Sbjct: 41  PPIRCLNTLLMALARHGMLSDMESLAARMP----VRNLHTYTTLINAYCHAGDLPAAKRH 96

Query: 165 LGRILRSCFTPDAVAFTS-----------------------------------LIKGLCA 189
           L  +LR+   PD+ A+TS                                   L++GLC 
Sbjct: 97  LSSLLRAGLAPDSHAYTSFVLGYCRTGLFAHACRLFLLMPQRGCARTPFTYAALLQGLCG 156

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
              + EA A+F  +   GC P+   YS +++GLC  G    A+ L  + A G G      
Sbjct: 157 AGMVREAMAVFAGMWPDGCAPDSHVYSIMVHGLCGAGRAGEAVALLTD-AMGKGFV---- 211

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            PN   Y  +IDG C  G ++ A ++F  M+ K   P+V TY  LI GFC +     A  
Sbjct: 212 -PNVAVYNALIDGYCSTGDLELAIDIFKGMQSKGCLPNVRTYTQLICGFCKSGKVERAMV 270

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   M++ G+ P+VVT+  ++   C  G ++ A RLL  M   G+ PN  T   L+D  C
Sbjct: 271 LYSRMIEAGLAPNVVTYTTLIQGQCSEGHLEHAFRLLHSMEACGLAPNEWTCLVLIDALC 330

Query: 370 LTGRVNHAKELFVSMESMGCK 390
             GR+  A++   S+   G K
Sbjct: 331 KHGRIEEAQQFLGSLVQKGIK 351



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 136/278 (48%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
             A  ++  M+    +P  +T   L+ G  ++  H +    L   + + GL P+ +T  +
Sbjct: 266 ERAMVLYSRMIEAGLAPNVVTYTTLIQGQCSE-GHLEHAFRLLHSMEACGLAPNEWTCLV 324

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK GR+      LG +++     + V +TS+I  LC   +   A  L  K+   G
Sbjct: 325 LIDALCKHGRIEEAQQFLGSLVQKGIKVNQVIYTSMIDALCKSGKFDGAHNLMQKIITEG 384

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+   YS+LI+GLCR    + A++L  +M       GV  + N V +T +ID   +E 
Sbjct: 385 FVPDAHMYSSLIDGLCRENKLLEAISLLNDMIES----GV--QANAVPFTILIDKHLREF 438

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D  K +  +M    + PDVVTY   I  +C      +A  ++I+M+D GV+P++ T+N
Sbjct: 439 RSDSPKMISDRMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYN 498

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++      G + +A   L+ MI  G  PN  +++ L+
Sbjct: 499 TLIKGYANLGLVSQAFSSLKNMIDNGCKPNDESYTVLL 536



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/271 (22%), Positives = 112/271 (41%), Gaps = 14/271 (5%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           R+ + G+ PD+ TY + I  +C+ GR+     ++ +++     P+   + +LIKG     
Sbjct: 449 RMAAAGVKPDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLG 508

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG--HTIVA----------LNLFEEMA 239
            + +A +    +   GCKPN  +Y+ L+  L +    H +VA          + + EE+ 
Sbjct: 509 LVSQAFSSLKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELL 568

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
               K    C   +  Y   I  L K   +++AK   + M+  N+ P    Y  +I    
Sbjct: 569 EEVIKLQ--CSSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCY 626

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                 EA   L  M+ +   P + ++  I+  LC+ G    A  +   ++ +  N +  
Sbjct: 627 RMKLLKEALRFLDSMVKRNYLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEI 686

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +  L+DG    G       L   ME   C+
Sbjct: 687 AWKILIDGLLQKGNTADCSRLLSFMEEQNCR 717



 Score = 52.8 bits (125), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 57/288 (19%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF-- 162
           P + ++ +      +    +   S+  ++   G+ P+L TYN LI  +  +G VS  F  
Sbjct: 457 PDVVTYTVFIRSYCQDGRMEDAESMMIQMIDHGVRPNLTTYNTLIKGYANLGLVSQAFSS 516

Query: 163 -----------------VVLGRILRSCFTPDAVA-------------------------- 179
                            V+LG +L+     D VA                          
Sbjct: 517 LKNMIDNGCKPNDESYTVLLGLLLKKNSYHDLVADSISLWKIVDMKVLEELLEEVIKLQC 576

Query: 180 ------FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
                 +   I+ L    R+ EA +    +++    P+   Y+ +I    R      AL 
Sbjct: 577 SSASYVYDCFIRCLSKVDRLEEAKSFLVGMQSANLTPSEDVYTCMIECCYRMKLLKEALR 636

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
             + M   N        P   +Y  II  LC+EG    AK +F  +  K  N D + +  
Sbjct: 637 FLDSMVKRN------YLPRLESYRFIICALCEEGSFHTAKSIFGDILSKEYNRDEIAWKI 690

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           LI G     +  + + LL  M +Q  +P    ++ +  E+    +  E
Sbjct: 691 LIDGLLQKGNTADCSRLLSFMEEQNCRPGSAIYSRLTGEITVTSEAQE 738


>gi|410109923|gb|AFV61041.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
           hederifolia]
          Length = 431

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 94/274 (34%), Positives = 147/274 (53%), Gaps = 6/274 (2%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L K K++  V   ++ +   G    LY +NIL++ FCK G +     V   I +    P 
Sbjct: 117 LMKLKYFKLVWGFYEEILECGYPASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPS 176

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
            V++ +L+ G      + E   L + + A G +P+V TYS LINGLC+      A  LF+
Sbjct: 177 VVSYNTLMNGYIRLGDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFD 236

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM       G++  PN VT+TT+IDG CK G VD A E++ QM  + + PD++TYN+LI+
Sbjct: 237 EMLVK----GLI--PNGVTFTTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIY 290

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G     D  +A+ L+ EM  +G++PD  T+  ++D  CK G +D A    + MI   +  
Sbjct: 291 GLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRL 350

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           +   ++ L+ G C  GR   A+++   M S+G K
Sbjct: 351 DDVAYTALISGLCQEGRSVDAEKMLREMLSVGLK 384



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 88/293 (30%), Positives = 154/293 (52%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  L  FN+L     K        S+F  +   GL P + +YN L+N + ++G ++ GF 
Sbjct: 139 PASLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFR 198

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +L S   PD   ++ LI GLC ES++ +A  LF ++   G  PN +T++TLI+G C
Sbjct: 199 LKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTFTTLIDGHC 258

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ ++++M            P+ +TY T+I GL K+G + +A +L  +M  K 
Sbjct: 259 KNGRVDLAMEIYKQM------LSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKG 312

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD  TY +LI G C   D + A      M+ + ++ D V +  ++  LC+ G+  +A 
Sbjct: 313 LKPDKFTYXTLIDGCCKEGDLDTAFEHRKRMIQENIRLDDVAYTALISGLCQEGRSVDAE 372

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M+  G+ P+  T++ +++ FC  G V    +L   M+  G   +V +Y
Sbjct: 373 KMLREMLSVGLKPDDRTYTMIINEFCKKGDVWKGSKLLKEMQRDGHVPSVVTY 425



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 106/190 (55%), Gaps = 6/190 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G   ++  ++ L++  C+ G   VA ++F+ +     K+G+  +P+ V+Y T+++G  + 
Sbjct: 137 GYPASLYFFNILMHRFCKDGDIRVAQSVFDAIT----KWGL--RPSVVSYNTLMNGYIRL 190

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +++   L   M    + PDV TY+ LI+G C  +  ++AN L  EM+ +G+ P+ VTF
Sbjct: 191 GDLNEGFRLKSAMLASGVQPDVYTYSVLINGLCKESKMDDANELFDEMLVKGLIPNGVTF 250

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             ++D  CKNG++D A  + + M+ + + P+  T++TL+ G    G +  A +L   M  
Sbjct: 251 TTLIDGHCKNGRVDLAMEIYKQMLSQCLLPDLITYNTLIYGLXKKGDLKQAHDLIDEMSM 310

Query: 387 MGCKHTVFSY 396
            G K   F+Y
Sbjct: 311 KGLKPDKFTY 320



 Score = 61.2 bits (147), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 63/152 (41%), Gaps = 35/152 (23%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L   L K         L   ++  GL PD +TY  LI+  CK G +   F  
Sbjct: 280 PDLITYNTLIYGLXKKGDLKQAHDLIDEMSMKGLKPDKFTYXTLIDGCCKEGDLDTAFEH 339

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN------------- 211
             R+++     D VA+T+LI GLC E R ++A  +  ++ + G KP+             
Sbjct: 340 RKRMIQENIRLDDVAYTALISGLCQEGRSVDAEKMLREMLSVGLKPDDRTYTMIINEFCK 399

Query: 212 ----------------------VITYSTLING 221
                                 V+TY+ L+NG
Sbjct: 400 KGDVWKGSKLLKEMQRDGHVPSVVTYNVLMNG 431



 Score = 48.9 bits (115), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 38/195 (19%), Positives = 84/195 (43%), Gaps = 12/195 (6%)

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGK------FGVVC------KPNTVTYTTIID 261
           +Y T+I+ LC     + A +L + + +  GK      F  +       + +    + +I 
Sbjct: 21  SYCTMIHFLCTHQMLLEAKSLIQVVVSRKGKGSASAVFATILETKGTQRSDIYVLSGLIT 80

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
              + GF+  A E +   ++  +     T   ++        +        E+++ G   
Sbjct: 81  AYLESGFLRDAIECYRLTREHKLWVPFDTCRKVLEHLMKLKYFKLVWGFYEEILECGYPA 140

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            +  FN++M   CK+G +  A  + + +   G+ P+  +++TLM+G+   G +N    L 
Sbjct: 141 SLYFFNILMHRFCKDGDIRVAQSVFDAITKWGLRPSVVSYNTLMNGYIRLGDLNEGFRLK 200

Query: 382 VSMESMGCKHTVFSY 396
            +M + G +  V++Y
Sbjct: 201 SAMLASGVQPDVYTY 215


>gi|357500143|ref|XP_003620360.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355495375|gb|AES76578.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 426

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 90/260 (34%), Positives = 143/260 (55%), Gaps = 20/260 (7%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G+  D+   +ILIN F  + ++++ F VL +IL+  + PD V  T+L+KGLC  + + +A
Sbjct: 5   GIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNEVKKA 64

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
                 + A G + + ++Y TLINGLC++G T                      P+   Y
Sbjct: 65  LHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKA--------------------PDQFMY 104

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + II+ LCK+  V  A +L+ +M  K I PDVVTYN+LI+GFC      +A  L  EM  
Sbjct: 105 SMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRL 164

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + + P+V +FN+++D LCK G +     +L +MI + V P+  T S+L+DG+ L  + N 
Sbjct: 165 KNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANK 224

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+ +F +M   G    + SY
Sbjct: 225 ARYIFNAMAQNGVTIDLRSY 244



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/309 (30%), Positives = 146/309 (47%), Gaps = 21/309 (6%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N AF +   +L +   P  +T   LL G L         L     + + G   D  +Y  
Sbjct: 27  NYAFSVLAKILKIGYQPDTVTLTTLLKG-LCINNEVKKALHFHDDVIAKGFRLDNVSYGT 85

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK G                  PD   ++ +I  LC +  +++A  L+ ++    
Sbjct: 86  LINGLCKSGETK--------------APDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKR 131

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V+TY+TLI G C  G    A+ LF EM   N        PN  ++  +IDGLCKEG
Sbjct: 132 IFPDVVTYNTLIYGFCIVGQLEDAIRLFNEMRLKN------IVPNVCSFNILIDGLCKEG 185

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V   K +   M  +++ PDVVT +SLI G+      N+A  +   M   GV  D+ ++N
Sbjct: 186 DVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNGVTIDLRSYN 245

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++++ L K   +DEA  L + M  + + P+T T+STL+DG    GR+++  +L   M + 
Sbjct: 246 IMINGLSKAKMVDEAVILFKEMQFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRAT 305

Query: 388 GCKHTVFSY 396
           G    V +Y
Sbjct: 306 GRSANVITY 314



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/290 (27%), Positives = 159/290 (54%), Gaps = 9/290 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A+ ++  M+  R  P  +T   L++G C+      +  + LF  +    + P++ ++NI
Sbjct: 119 DAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVG--QLEDAIRLFNEMRLKNIVPNVCSFNI 176

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK G V  G  VL  +++    PD V  +SLI G     +  +A  +F  +   G
Sbjct: 177 LIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYFLVKKANKARYIFNAMAQNG 236

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
              ++ +Y+ +INGL +      A+ LF+EM     +F  +  P+T+TY+T+IDGL K G
Sbjct: 237 VTIDLRSYNIMINGLSKAKMVDEAVILFKEM-----QFKSMT-PDTITYSTLIDGLGKLG 290

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +    +L  +M+    + +V+TY+SL++  C +  ++ A  +  ++ D+G +P++VT+N
Sbjct: 291 RISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAIRIFTKIKDKGFEPNMVTYN 350

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +++D LCKNG++ +A  +   ++++G   +   ++ +++G C     + A
Sbjct: 351 ILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVMINGLCREALFDEA 400



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 143/293 (48%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P    ++++   L K K       L+  +    +FPD+ TYN LI  FC +G++     
Sbjct: 98  APDQFMYSMIINRLCKDKLVVDAYDLYCEMVVKRIFPDVVTYNTLIYGFCIVGQLEDAIR 157

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   +      P+  +F  LI GLC E  +    ++   +     KP+V+T S+LI+G  
Sbjct: 158 LFNEMRLKNIVPNVCSFNILIDGLCKEGDVKGGKSVLAVMIKQSVKPDVVTCSSLIDGYF 217

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
                  A  +F  MA  NG        +  +Y  +I+GL K   VD+A  LF +M+ K+
Sbjct: 218 LVKKANKARYIFNAMAQ-NG-----VTIDLRSYNIMINGLSKAKMVDEAVILFKEMQFKS 271

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY++LI G       +    L+ EM   G   +V+T++ +++ LCK+G  D A 
Sbjct: 272 MTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHFDTAI 331

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R+   +  +G  PN  T++ L+DG C  GR+  A+E+F  +   G +  V  Y
Sbjct: 332 RIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLY 384



 Score = 92.0 bits (227), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 63/214 (29%), Positives = 101/214 (47%), Gaps = 25/214 (11%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           C S   G       N+A  IF+ M         L S+N++   L+K K  D  + LFK +
Sbjct: 209 CSSLIDGYFLVKKANKARYIFNAMAQ-NGVTIDLRSYNIMINGLSKAKMVDEAVILFKEM 267

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
               + PD  TY+ LI+   K+GR+S+ + ++  +  +  + + + ++SL+  LC     
Sbjct: 268 QFKSMTPDTITYSTLIDGLGKLGRISYVWDLIDEMRATGRSANVITYSSLLNVLCKSGHF 327

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE---------------M 238
             A  +FTK+K  G +PN++TY+ L++GLC+ G    A  +F +               M
Sbjct: 328 DTAIRIFTKIKDKGFEPNMVTYNILVDGLCKNGRLKDAQEIFHDLLIKGYRLDVRLYTVM 387

Query: 239 ANG-------NGKFGVVCKPNTVTYTTIIDGLCK 265
            NG       +  +G  C PN VTY  II  L K
Sbjct: 388 INGLCREALFDEAYG--CTPNAVTYEIIIRALFK 419



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 54/106 (50%)

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M+ + I  D++  + LI+ F +    N A  +L +++  G QPD VT   ++  LC N +
Sbjct: 1   MELRGIQRDIINLSILINSFYHLCQLNYAFSVLAKILKIGYQPDTVTLTTLLKGLCINNE 60

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + +A    + +I +G   +  ++ TL++G C +G      +   SM
Sbjct: 61  VKKALHFHDDVIAKGFRLDNVSYGTLINGLCKSGETKAPDQFMYSM 106


>gi|449440401|ref|XP_004137973.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Cucumis sativus]
          Length = 606

 Score =  161 bits (408), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +T++ +L    +++   +    LF  +   G+ PD+Y Y  +IN  CK G +   FV+  
Sbjct: 262 VTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFD 321

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      P+A  + +LI G C    +  A  +   +++ G   N + ++TL++G C+ G
Sbjct: 322 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 381

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L   M     +       +  T   I  G C+    ++AK L L M+++ + P
Sbjct: 382 MIDEALRLQNIMQQKGFEI------DAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 435

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +VV+++ LI  +C   ++ EA  L   M  +G  P VVT+N  ++  CK GKM+EA +L+
Sbjct: 436 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 495

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  RG+ P+T T+++L+DG   +G V+ A ELF  M  +G    V +Y
Sbjct: 496 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTY 545



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 7/276 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +FD M   R  P   T   L+ G   K         +   + S G+  +   +N L+
Sbjct: 316 AFVLFDEMTERRLVPNAYTYGALINGA-CKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 374

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G +     +   + +  F  DA     +  G C  +R  EA  L   ++  G  
Sbjct: 375 DGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA 434

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNV+++S LI+  C+  +   A  LF+ M    GK      P+ VTY   I+  CK+G +
Sbjct: 435 PNVVSFSILIDIYCKEQNFAEARRLFKVMEK-KGK-----APSVVTYNAFIERYCKKGKM 488

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A +L  +M+++ + PD  TY SLI G   + + + A  L  EM   G+  +VVT+ VI
Sbjct: 489 EEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVI 548

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +  L K+G+ DEA +L + M   G+ P+   +S+L+
Sbjct: 549 ISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 584



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 32/349 (9%)

Query: 50  AKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTS 109
           A++K  L+  V D         ER  SS  G+    +  E FC                 
Sbjct: 85  AEMKNVLKFIVNDGNLWSNV--ERIVSSIGGEFNEPSIVEKFC----------------- 125

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            ++LF      + +D+ L +F      G   D  +    +    + G +      L +++
Sbjct: 126 -DMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMV 184

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR---TG 226
            S       ++T+++ GLC +  ++ A AL  +L   G KP+VITY+TL+NG       G
Sbjct: 185 DSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVG 244

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                L+L E+          V   N  TYT +I+   +   +++A++LF +M  K I P
Sbjct: 245 GVNEILSLMEKN---------VVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEP 295

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV  Y S+I+  C   +   A  L  EM ++ + P+  T+  +++  CK G+M  A  ++
Sbjct: 296 DVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMV 355

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
             M  +GV+ N   F+TLMDG+C  G ++ A  L   M+  G +   F+
Sbjct: 356 NDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT 404



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 6/230 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L     K    D  L L   +   G   D +T NI+ + FC+  R      +L  + 
Sbjct: 370 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 429

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V+F+ LI   C E    EA  LF  ++  G  P+V+TY+  I   C+ G   
Sbjct: 430 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 489

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L  EM     + G++  P+T TYT++IDG    G VD+A ELF +M    +N +VV
Sbjct: 490 EAYKLINEMQ----ERGLM--PDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 543

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           TY  +I G       +EA  L  EM  +G+ PD   ++ ++  L K G +
Sbjct: 544 TYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 593



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 1/144 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   +   P + ++N       K    +    L   +   GL PD YTY  L
Sbjct: 455 EARRLFKVM-EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSL 513

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+     G V     +   + +     + V +T +I GL  + R  EA  L+ ++   G 
Sbjct: 514 IDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGI 573

Query: 209 KPNVITYSTLINGLCRTGHTIVAL 232
            P+   YS+LI  L + G  +  L
Sbjct: 574 VPDDGIYSSLIASLHKVGPLVSGL 597


>gi|224136626|ref|XP_002322376.1| predicted protein [Populus trichocarpa]
 gi|222869372|gb|EEF06503.1| predicted protein [Populus trichocarpa]
          Length = 715

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 139/270 (51%), Gaps = 7/270 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++F  +   G+ PD  +Y ++   +C+MGR+S     L  ++R  F  D    T +I   
Sbjct: 217 NVFDEMRVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTF 276

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C +         F K    G KPN+I +++LINGLC+ G    A  + EEM         
Sbjct: 277 CEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGW---- 332

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNE 306
             KPN  T+T +IDGLCK+G+ +KA  LFL++ +  +  P+V TY S+IHG+C  +  N 
Sbjct: 333 --KPNVYTHTALIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNR 390

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  LL  M +QG+ P+  T+  ++D   K G  ++A  L++LM   G + N  T++  +D
Sbjct: 391 AEMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFID 450

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             C  GR   A +L      +G +    +Y
Sbjct: 451 SLCKKGRFLEACKLLKKGFRLGLQADTVTY 480



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 6/304 (1%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M  +R   P   S+ L+     +           K +   G   D  T  ++I+ F
Sbjct: 218 VFDEM-RVRGVCPDSVSYKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTF 276

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           C+ G  S  F    + +     P+ + FTSLI GLC    I +A  +  ++   G KPNV
Sbjct: 277 CEKGFASRVFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNV 336

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            T++ LI+GLC+ G T  A  LF ++   +       KPN  TYT++I G CKE  +++A
Sbjct: 337 YTHTALIDGLCKKGWTEKAFRLFLKLVRSDDY-----KPNVHTYTSMIHGYCKEDKLNRA 391

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           + L  +MK++ + P+  TY  LI G   A ++ +A  L+  M  +G   ++ T+N  +D 
Sbjct: 392 EMLLSRMKEQGLVPNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDS 451

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK G+  EA +LL+     G+  +T T++ L+   C       A   F  M   G +  
Sbjct: 452 LCKKGRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPD 511

Query: 393 VFSY 396
           + +Y
Sbjct: 512 MHTY 515



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/272 (32%), Positives = 138/272 (50%), Gaps = 7/272 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
           V   F +    GL P+L  +  LIN  CK G +   F +L  +++  + P+    T+LI 
Sbjct: 285 VFWYFDKWVELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTALID 344

Query: 186 GLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
           GLC +    +A  LF KL ++   KPNV TY+++I+G C+       LN  E + +   +
Sbjct: 345 GLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDK----LNRAEMLLSRMKE 400

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G+V  PNT TYT +IDG  K G  +KA EL   M  +  + ++ TYN+ I   C    +
Sbjct: 401 QGLV--PNTKTYTCLIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRF 458

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            EA  LL +    G+Q D VT+ +++ ELC+     EA      M   GV P+  T++TL
Sbjct: 459 LEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTL 518

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  F    R+  +++LF     +G   T  +Y
Sbjct: 519 IAAFSRQRRMEESEKLFAEAVGLGLVPTKETY 550



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 90/310 (29%), Positives = 145/310 (46%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +  F  FD  + +    P L +F  L   L K         + + +   G  P++YT+  
Sbjct: 283 SRVFWYFDKWVEL-GLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTHTA 341

Query: 148 LINCFCKMGRVSHGFVVLGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK G     F +  +++RS  + P+   +TS+I G C E ++  A  L +++K  
Sbjct: 342 LIDGLCKKGWTEKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQ 401

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PN  TY+ LI+G  + G+   A  L + M    GK G     N  TY   ID LCK+
Sbjct: 402 GLVPNTKTYTCLIDGHSKAGNFEKAYELMDLM----GKEGF--SANIFTYNAFIDSLCKK 455

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A +L  +     +  D VTY  LI   C   D  EA     +M   GVQPD+ T+
Sbjct: 456 GRFLEACKLLKKGFRLGLQADTVTYTILISELCRRADTREALVFFSKMFKAGVQPDMHTY 515

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++    +  +M+E+ +L    +  G+ P   T+++++ G+C    V+ A + F  M  
Sbjct: 516 NTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSD 575

Query: 387 MGCKHTVFSY 396
            GC     +Y
Sbjct: 576 HGCTPDSLTY 585



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/282 (26%), Positives = 133/282 (47%), Gaps = 6/282 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +AF +F  ++      P + ++  +     K    +    L  R+   GL P+  TY  
Sbjct: 353 EKAFRLFLKLVRSDDYKPNVHTYTSMIHGYCKEDKLNRAEMLLSRMKEQGLVPNTKTYTC 412

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K G     + ++  + +  F+ +   + + I  LC + R +EA  L  K    G
Sbjct: 413 LIDGHSKAGNFEKAYELMDLMGKEGFSANIFTYNAFIDSLCKKGRFLEACKLLKKGFRLG 472

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            + + +TY+ LI+ LCR   T  AL  F +M      F    +P+  TY T+I    ++ 
Sbjct: 473 LQADTVTYTILISELCRRADTREALVFFSKM------FKAGVQPDMHTYNTLIAAFSRQR 526

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++++++LF +     + P   TY S+I G+C   + + A      M D G  PD +T+ 
Sbjct: 527 RMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYG 586

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            ++  LCK  K+DEA +L E M+ +G++P   T  TL   +C
Sbjct: 587 ALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYC 628



 Score = 79.7 bits (195), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 57/219 (26%), Positives = 93/219 (42%), Gaps = 11/219 (5%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ +L   L +       L  F ++   G+ PD++TYN LI  F +  R+     +    
Sbjct: 479 TYTILISELCRRADTREALVFFSKMFKAGVQPDMHTYNTLIAAFSRQRRMEESEKLFAEA 538

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           +     P    +TS+I G C +  +  A   F ++   GC P+ +TY  LI+GLC+    
Sbjct: 539 VGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSDHGCTPDSLTYGALISGLCKESKL 598

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL-FLQMKDKNINPD 287
             A  L+E M +          P  VT  T+    CK+   D A  +  L+  DK +   
Sbjct: 599 DEACQLYEAMVDKG------LSPCEVTRLTLAYEYCKQD--DSATAMVILERLDKKLW-- 648

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           + T N+LI   C       A     +++D+    D VT 
Sbjct: 649 IRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVTL 687



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/269 (25%), Positives = 110/269 (40%), Gaps = 20/269 (7%)

Query: 52  LKESLRLTVK-DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSF 110
           LK+  RL ++ D  +    + E C+ +           EA   F  M       P + ++
Sbjct: 465 LKKGFRLGLQADTVTYTILISELCRRAD--------TREALVFFSKMFKA-GVQPDMHTY 515

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L    ++ +  +    LF      GL P   TY  +I  +C+   VS       R+  
Sbjct: 516 NTLIAAFSRQRRMEESEKLFAEAVGLGLVPTKETYTSMICGYCRDRNVSLALKFFNRMSD 575

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
              TPD++ + +LI GLC ES++ EA  L+  +   G  P  +T  TL    C+   +  
Sbjct: 576 HGCTPDSLTYGALISGLCKESKLDEACQLYEAMVDKGLSPCEVTRLTLAYEYCKQDDSAT 635

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A+ + E +           K    T  T+I  LC E  V  A   F ++ DK+ N D VT
Sbjct: 636 AMVILERLDK---------KLWIRTVNTLIRKLCSERKVGMAVLFFHKLLDKDQNVDRVT 686

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGV 319
             +     CY ++       L E + +G+
Sbjct: 687 LTAFTTA-CYESNKYALVSDLSERISKGI 714



 Score = 64.3 bits (155), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A+N+  EM N     G+V    T+   T + G  + G V  A+ +F +M+ + + PD V+
Sbjct: 180 AVNMVIEMEN----HGLVLTVRTLNCVTGVAG--EMGLVGYAENVFDEMRVRGVCPDSVS 233

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y  +   +C     ++ +  L +M+ +G   D  T  +++   C+ G         +  +
Sbjct: 234 YKLMAIAYCRMGRISDTDRWLKDMVRRGFVVDNATCTLMISTFCEKGFASRVFWYFDKWV 293

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+ PN   F++L++G C  G +  A E+   M   G K  V+++
Sbjct: 294 ELGLKPNLINFTSLINGLCKRGSIKQAFEMLEEMVKKGWKPNVYTH 339


>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 607

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/300 (31%), Positives = 152/300 (50%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  +FD  +  R   P + SFN L     K  + D    L   +  +   PD++TY+ L
Sbjct: 258 DAQKVFDE-ITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSAL 316

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           IN  CK  ++     +   +      P+ V FT+LI G     +I      + K+ + G 
Sbjct: 317 INALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGL 376

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           +P+++ Y+TL+NG C+ G  + A N+ + M           +P+ VTYTT+IDG C+ G 
Sbjct: 377 QPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG------LRPDKVTYTTLIDGFCRGGD 430

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           VD A E+  +M    I  D V +++LI G C      +A   L EM+  G++PD VT+ +
Sbjct: 431 VDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTM 490

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +MD  CK G      +LL+ M   G  PN  T++ L++G C  G++ +A  L  +M ++G
Sbjct: 491 MMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNADMLLDAMLNVG 550



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 149/293 (50%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +  FN+L     K  +      +F  +    L P + ++N LIN +CK+G +  GF 
Sbjct: 237 PLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLINGYCKVGNLDVGFR 296

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   + +S   PD   +++LI  LC E+++  A  LF ++   G  PN + ++TLI+G  
Sbjct: 297 LKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGHS 356

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G   +    +++M +         +P+ V Y T+++G CK G +  A+ +   M  + 
Sbjct: 357 RNGQIDLMKESYQKMLSKG------LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD VTY +LI GFC   D + A  +  EM   G++ D V F+ ++  +CK G++ +A 
Sbjct: 411 LRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAE 470

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+  T++ +MD FC  G      +L   M+S G    V +Y
Sbjct: 471 RALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTY 523



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 136/272 (50%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           TV   +  +   G   ++Y +NIL+N FCK G +     V   I +    P  V+F +LI
Sbjct: 223 TVWGFYMEILDAGFPLNVYVFNILMNKFCKEGNICDAQKVFDEITKRSLRPTVVSFNTLI 282

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            G C    +     L   ++    +P+V TYS LIN LC+      A  LF EM     +
Sbjct: 283 NGYCKVGNLDVGFRLKHHMEKSRTRPDVFTYSALINALCKENKMDGAHRLFYEMC----E 338

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G++  PN V +TT+I G  + G +D  KE + +M  K + PD+V YN+L++GFC   D 
Sbjct: 339 RGLI--PNDVIFTTLIHGHSRNGQIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  ++  M+ +G++PD VT+  ++D  C+ G +D A  + + M   G+  +   FS L
Sbjct: 397 VAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSAL 456

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + G C  GRV  A+     M   G K    +Y
Sbjct: 457 ICGMCKEGRVIDAERALREMLRAGMKPDDVTY 488


>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 774

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/311 (33%), Positives = 164/311 (52%), Gaps = 14/311 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  + + M  M    P + +FN +   L +         L  R+   G  P+  TY +
Sbjct: 260 NEALKLLEEMFLM-GCLPDVDTFNDVIYGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGV 318

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA-LFTKLKAF 206
           L+N  C++G+V    V+L ++     TP+ V FT LI G     R+ EA A L+ K+   
Sbjct: 319 LMNGLCRVGKVDEAQVLLNKVP----TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKN 374

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           GC+P+V T++TLI+GLC+ G    A+++  +M ANG       C PN +TYTT++DG CK
Sbjct: 375 GCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANG-------CTPNLITYTTLLDGFCK 427

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           +  +++A  +  +M  K    +++ YN L+   C      +A  +L EM D+G +PD+ T
Sbjct: 428 KNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFT 487

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           FN ++  LCK  + ++A  L   M+L GV  NT T++TL+  F   G +  A +L   M 
Sbjct: 488 FNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDML 547

Query: 386 SMGCKHTVFSY 396
             GC     +Y
Sbjct: 548 FRGCPLDEITY 558



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 159/341 (46%), Gaps = 27/341 (7%)

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           ++A  P+ A  +F  ML+ +   P + +F ++   L      D   SL + +   G  P+
Sbjct: 184 VSANCPSVAANVFYEMLS-KGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPN 242

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
              Y  LI+   K  RV+    +L  +      PD   F  +I GLC  +RI E A L  
Sbjct: 243 SVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCRLNRIHEGAKLVD 302

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNL-----------FEEMANGNGKFGVV-- 248
           ++   G  PN ITY  L+NGLCR G    A  L           F  + NG  K G +  
Sbjct: 303 RMLFRGFTPNDITYGVLMNGLCRVGKVDEAQVLLNKVPTPNDVHFTILINGYVKSGRLDE 362

Query: 249 -------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
                        C+P+  T+ T+I GLCK+G +  A ++   M      P+++TY +L+
Sbjct: 363 ANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLL 422

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            GFC  N   EA  +L EM  +G + +++ +NV++  LCKNGK+ +A  +L  M  +G  
Sbjct: 423 DGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCK 482

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P+  TF+TL+ G C   R   A  L+  M   G      +Y
Sbjct: 483 PDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTY 523



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 151/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L K     + + +   +++ G  P+L TY  L++ FCK  ++     V
Sbjct: 378 PDVFTFNTLIHGLCKKGLMGSAVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYV 437

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +    F  + + +  L++ LC   ++ +A  +  ++   GCKP++ T++TLI GLC+
Sbjct: 438 LNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCK 497

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L+ +M       GV+   NTVTY T+I    + G + +A +L   M  +  
Sbjct: 498 VDRKEDALALYRDMLLD----GVIA--NTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGC 551

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D +TYN LI  FC      +A  L  EM+ + + P  ++ N++++ LC+ GK+  A  
Sbjct: 552 PLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCRVGKVCNALE 611

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  MI RG+ P+  T+++L++G C  G +  A  LF  +++ G +    +Y
Sbjct: 612 LLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITY 663



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 144/293 (49%), Gaps = 11/293 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+N++   L          ++F  + S G+ P +YT+ +++   C +  V +   +
Sbjct: 171 PTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSL 230

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +    P++V + +LI  L    R+ EA  L  ++   GC P+V T++ +I GLCR
Sbjct: 231 LRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGLCR 290

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                    L + M            PN +TY  +++GLC+ G VD+A+ L     +K  
Sbjct: 291 LNRIHEGAKLVDRMLFRG------FTPNDITYGVLMNGLCRVGKVDEAQVLL----NKVP 340

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIE-MMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            P+ V +  LI+G+  +   +EAN  L + M+  G +PDV TFN ++  LCK G M  A 
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGSAV 400

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++  M   G  PN  T++TL+DGFC   ++  A  +   M + G +  +  Y
Sbjct: 401 DMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGY 453



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/266 (31%), Positives = 130/266 (48%), Gaps = 14/266 (5%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  +N+L   L K       L +   ++  G  PD++T+N LI   CK+ R      +  
Sbjct: 450 IMGYNVLLRALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYR 509

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L      + V + +LI        I EA  L   +   GC  + ITY+ LI   C+ G
Sbjct: 510 DMLLDGVIANTVTYNTLIHAFLRGGAIQEALKLVNDMLFRGCPLDEITYNGLIKAFCKLG 569

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T  AL LF+EM   +        P+ ++   +I+GLC+ G V  A EL   M  + + P
Sbjct: 570 ATEKALGLFDEMVRKD------LVPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAP 623

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DVVTYNSLI+G C   +  EA  L  ++  +G+QPD +T+N ++   C+ G  D+A    
Sbjct: 624 DVVTYNSLINGLCKMGNIREAFNLFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAY--- 680

Query: 347 ELMILRGVN----PNTSTFSTLMDGF 368
            L++LRGV     PN  T+  L+  F
Sbjct: 681 -LLLLRGVENAFIPNDVTWYILVSNF 705



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 134/278 (48%), Gaps = 6/278 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++  L     K    +    +   +++ G   ++  YN+L+   CK G+V     +
Sbjct: 413 PNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNGKVPKALDM 472

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           LG +      PD   F +LI GLC   R  +A AL+  +   G   N +TY+TLI+   R
Sbjct: 473 LGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLR 532

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL L  +M          C  + +TY  +I   CK G  +KA  LF +M  K++
Sbjct: 533 GGAIQEALKLVNDMLFRG------CPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDL 586

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  ++ N LI+G C       A  LL +M+ +G+ PDVVT+N +++ LCK G + EA  
Sbjct: 587 VPSNISCNLLINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFN 646

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           L   +   G+ P+  T++TL+   C  G  + A  L +
Sbjct: 647 LFNKLQAEGIQPDAITYNTLICWHCRAGMFDDAYLLLL 684



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 6/231 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L K    +  L+L++ +   G+  +  TYN LI+ F + G +     +
Sbjct: 483 PDIFTFNTLIFGLCKVDRKEDALALYRDMLLDGVIANTVTYNTLIHAFLRGGAIQEALKL 542

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L      D + +  LIK  C      +A  LF ++      P+ I+ + LINGLCR
Sbjct: 543 VNDMLFRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNLLINGLCR 602

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL L  +M +          P+ VTY ++I+GLCK G + +A  LF +++ + I
Sbjct: 603 VGKVCNALELLRDMIHRG------LAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEGI 656

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
            PD +TYN+LI   C A  +++A  LL+  ++    P+ VT+ +++    K
Sbjct: 657 QPDAITYNTLICWHCRAGMFDDAYLLLLRGVENAFIPNDVTWYILVSNFIK 707



 Score = 84.7 bits (208), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 60/180 (33%), Positives = 84/180 (46%), Gaps = 9/180 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EA  + + ML  R  P    ++N L     K    +  L LF  +    L P   + N+
Sbjct: 537 QEALKLVNDML-FRGCPLDEITYNGLIKAFCKLGATEKALGLFDEMVRKDLVPSNISCNL 595

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  C++G+V +   +L  ++     PD V + SLI GLC    I EA  LF KL+A G
Sbjct: 596 LINGLCRVGKVCNALELLRDMIHRGLAPDVVTYNSLINGLCKMGNIREAFNLFNKLQAEG 655

Query: 208 CKPNVITYSTLINGLCRTGHTIVA-LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            +P+ ITY+TLI   CR G    A L L   + N          PN VT+  ++    KE
Sbjct: 656 IQPDAITYNTLICWHCRAGMFDDAYLLLLRGVENA-------FIPNDVTWYILVSNFIKE 708



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 67/136 (49%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C+P   +Y  ++D L        A  +F +M  K + P V T+  ++   C  N+ + A 
Sbjct: 169 CEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNAC 228

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            LL +M   G  P+ V +  ++  L K  +++EA +LLE M L G  P+  TF+ ++ G 
Sbjct: 229 SLLRDMTKHGCVPNSVVYQTLIHALSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVIYGL 288

Query: 369 CLTGRVNHAKELFVSM 384
           C   R++   +L   M
Sbjct: 289 CRLNRIHEGAKLVDRM 304



 Score = 47.4 bits (111), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 36/138 (26%), Positives = 63/138 (45%), Gaps = 5/138 (3%)

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
            Y  +ID L          +L LQ+K++ I      +  ++  +  AN   +A  +L++M
Sbjct: 104 VYHVLIDKLGAAKEFKVIDKLLLQIKEEGIAFRESLFICIMKYYGRANLPGQATRMLLDM 163

Query: 315 MDQGV---QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
             +GV   +P   ++NV++D L        A+ +   M+ +GV P   TF  +M   C+ 
Sbjct: 164 --KGVYCCEPTFKSYNVVLDILVSANCPSVAANVFYEMLSKGVIPTVYTFGVVMKALCMV 221

Query: 372 GRVNHAKELFVSMESMGC 389
             V++A  L   M   GC
Sbjct: 222 NEVDNACSLLRDMTKHGC 239


>gi|48716316|dbj|BAD22929.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|48717088|dbj|BAD22861.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
          Length = 933

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +  +N L     +    D    +   +   G+ P++ TY   I  +C+   V   F 
Sbjct: 201 PMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFD 260

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++R+    D V  ++L+ GLC + R  EA ALF ++   G  PN +TY TLI+ L 
Sbjct: 261 LYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLA 320

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G     L+L  EM +     GVV   + VTYT ++D L K+G  D+ K+        N
Sbjct: 321 KAGRGKELLSLLGEMVS----RGVVM--DLVTYTALMDWLGKQGKTDEVKDTLRFALSDN 374

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+ VTY  LI   C A++ +EA  +L+EM ++ + P+VVTF+ +++   K G +D+A+
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
               +M  RG+NPN  T+ TL+DGF      + A E++  M   G K   F
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKF 485



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 141/311 (45%), Gaps = 29/311 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++  L   L K    D V    +   S  L P+  TY +LI+  CK   V     VL 
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLL 403

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +     +P+ V F+S+I G      + +A      +K  G  PNV+TY TLI+G  +  
Sbjct: 404 EMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQ 463

Query: 227 HTIVALNLFEEM---------------ANG---NGKF-----------GVVCKPNTVTYT 257
               AL ++ +M                NG   NGK            G     + V YT
Sbjct: 464 GQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYT 523

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDGL K G +  A +   ++ D+N+ PD V YN  I+  C    + EA   L EM + 
Sbjct: 524 TLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNM 583

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD  T+N ++   C+ G+  +A +LL  M +  + PN  T++TL+ G   TG V  A
Sbjct: 584 GLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA 643

Query: 378 KELFVSMESMG 388
           K L   M S G
Sbjct: 644 KYLLNEMVSAG 654



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 135/296 (45%), Gaps = 7/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P    + N L   L +    D   +L  R        D+  +N LI  +C++G    
Sbjct: 129 RGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHAL-DVIGWNTLIAGYCRVGDTPA 187

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V  R+       D V + +L+ G C   ++  A  +   +K  G  PNV TY+  I 
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             CRT     A +L+E M     + GV+   + VT + ++ GLC++G   +A  LF +M 
Sbjct: 248 YYCRTKGVEEAFDLYEGMV----RNGVLL--DVVTLSALVAGLCRDGRFSEAYALFREMD 301

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P+ VTY +LI     A    E   LL EM+ +GV  D+VT+  +MD L K GK D
Sbjct: 302 KVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTD 361

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E    L   +   ++PN  T++ L+D  C    V+ A+++ + ME       V ++
Sbjct: 362 EVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 142/327 (43%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N+   CL     +    S    + + GL PD  TYN +I   C+ G  +    +
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT---------- 214
           L  +  S   P+ + + +L+ GL     + +A  L  ++ + G  P+ +T          
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 215 -------------------------YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                    Y+TL+  LC  G T  A  + EEM       G   
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEM------LGSGI 725

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+T+T+  +I G CK   +D A   + QM  +NI+P++ T+N+L+ G        EA  
Sbjct: 726 APDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGT 785

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +LIEM   G++P+ +T++++     K     EA RL   M+ +G  P  ST++ L+  F 
Sbjct: 786 VLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFT 845

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  AKELF  M+  G   T  +Y
Sbjct: 846 KAGMMTQAKELFKDMQKRGVHPTSCTY 872



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/293 (28%), Positives = 137/293 (46%), Gaps = 7/293 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + + M++   SP  LT   +L  C ++++  D +L + + + + GL  D+  YN L
Sbjct: 642 KAKYLLNEMVSAGFSPSSLTHRRVLQAC-SQSRRLDVILDIHEWMMNAGLHADITVYNTL 700

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C  G      VVL  +L S   PD + F +LI G C  S +  A A + ++     
Sbjct: 701 LQVLCYHGMTRKATVVLEEMLGSGIAPDTITFNALILGHCKSSHLDNAFATYAQMLHQNI 760

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            PN+ T++TL+ GL   G    A  +  EM     K G+  +PN +TY  +  G  K+  
Sbjct: 761 SPNIATFNTLLGGLESVGRIGEAGTVLIEME----KSGL--EPNNLTYDILATGHGKQSN 814

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A  L+ +M  K   P V TYN+LI  F  A    +A  L  +M  +GV P   T+++
Sbjct: 815 KVEAMRLYCEMVGKGFVPKVSTYNALISDFTKAGMMTQAKELFKDMQKRGVHPTSCTYDI 874

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           ++    +     E  + L+ M  +G +P+  T S +   F   G    A+ L 
Sbjct: 875 LVSGWSRIRNGTEVKKCLKDMKEKGFSPSKGTLSFICRAFSKPGMTWQAQRLL 927



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F+ +     K    D      + +   G+ P++ TY  LI+ F K         V
Sbjct: 412 PNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEV 471

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L      +     SL+ GL    +I EA ALF      G   + + Y+TLI+GL +
Sbjct: 472 YHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFK 531

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +E+ + N        P+ V Y   I+ LC  G   +AK    +M++  +
Sbjct: 532 AGDMPTAFKFGQELMDRN------MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGL 585

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TYN++I   C   +  +A  LL EM    ++P+++T+N ++  L   G +++A  
Sbjct: 586 KPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M+  G +P++ T   ++     + R++   ++   M + G    +  Y
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVY 697



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 41/326 (12%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           +  M+  R   P + ++  L     K +  D  L ++  +   G+  + +  + L+N   
Sbjct: 436 YKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLR 495

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           + G++     +      S  + D V +T+LI GL     +  A     +L      P+ +
Sbjct: 496 QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAV 555

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y+  IN LC  G    A +   EM N      +  KP+  TY T+I   C++G   KA 
Sbjct: 556 VYNVFINCLCMLGKFKEAKSFLTEMRN------MGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------------------- 313
           +L  +MK  +I P+++TYN+L+ G        +A  LL E                    
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 314 ---------------MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                          MM+ G+  D+  +N ++  LC +G   +A+ +LE M+  G+ P+T
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDT 729

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
            TF+ L+ G C +  +++A   +  M
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQM 755



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D  + N L+   C++ R+    + L R  R    P  VA+  L+  L   +    A A+ 
Sbjct: 72  DPASLNALLYSHCRL-RLLRPAIALLRSSR----PTTVAYNILLAALSDHA---HAPAVL 123

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   G   + +T +TL+ GLCR G    A  L +       + G +   + + + T+I
Sbjct: 124 AEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD-------RGGGIHALDVIGWNTLI 176

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G C+ G    A  +  +M  + +  DVV YN+L+ GFC A   + A  +L  M + GV 
Sbjct: 177 AGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVD 236

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+V T+   +   C+   ++EA  L E M+  GV  +  T S L+ G C  GR + A  L
Sbjct: 237 PNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYAL 296

Query: 381 FVSMESMGCKHTVFSY 396
           F  M+ +G      +Y
Sbjct: 297 FREMDKVGAAPNHVTY 312


>gi|168026089|ref|XP_001765565.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162683203|gb|EDQ69615.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 505

 Score =  161 bits (408), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 97/285 (34%), Positives = 147/285 (51%), Gaps = 9/285 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ +          D    +F+++   GL PD  TYNILI+ F K G++   F  
Sbjct: 168 PNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLERAFDF 227

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +G+     FT + V + SL+  L  +  I     LF ++KA G   N +TY+ LI  L  
Sbjct: 228 VGK--SRSFT-NEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLGW 284

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G       L+ EM + + K+ +V      T   ++D L K G V+ A ELF  MK K +
Sbjct: 285 AGRVEDVWQLYLEMVDNDIKYDIV------TINNVLDCLSKAGRVEAAFELFQDMKFKGL 338

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           N D VTYN LI+G   A   + A  LL+EM + G  P+++T+N ++    K   +  A+R
Sbjct: 339 NADTVTYNILINGLGRAGKLDAAGALLLEMEENGCAPNIITYNTLISSYGKWSNLSAATR 398

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           L   M  RGV PN  ++S+L++GF   GR + A  LF  M++ GC
Sbjct: 399 LFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGC 443



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 7/256 (2%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           FD++   R     +T +N L   L +      ++ LF ++ + GL  +  TY ILI    
Sbjct: 225 FDFVGKSRSFTNEVT-YNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTYAILIERLG 283

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
             GRV   + +   ++ +    D V   +++  L    R+  A  LF  +K  G   + +
Sbjct: 284 WAGRVEDVWQLYLEMVDNDIKYDIVTINNVLDCLSKAGRVEAAFELFQDMKFKGLNADTV 343

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           TY+ LINGL R G    A  L  EM   NG     C PN +TY T+I    K   +  A 
Sbjct: 344 TYNILINGLGRAGKLDAAGALLLEMEE-NG-----CAPNIITYNTLISSYGKWSNLSAAT 397

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
            LFL+MK++ + P+VV+Y+SLI GF  A   + A  L  EM  +G  P+ VT+N+++D L
Sbjct: 398 RLFLEMKERGVAPNVVSYSSLIEGFGKAGRTDAAISLFREMKAEGCPPNHVTYNLLIDCL 457

Query: 334 CKNGKMDEASRLLELM 349
            + G+   A   L  M
Sbjct: 458 IRAGRFGAAMEYLREM 473



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 127/288 (44%), Gaps = 13/288 (4%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L     +    +  L         G  P  YTY+ +I  F K G V +G ++  ++L
Sbjct: 33  FNTLIHIYGEANMMEKALQTLAAFTKEGGRPTAYTYSSMIQVFMKGGDVQNGLLMYKQML 92

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           ++ F PD   F  LI  L    ++ EA  +F  +      P+V TY+ LI  L   G   
Sbjct: 93  KAKFVPDHTTFNILIDSLAKADQVEEACNVFGDMFKLNVSPDVYTYTILIRSLGTIGRID 152

Query: 230 VALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             + LFE M A G       C+PN  TY +++      G VD+A ++F QM  K + PD 
Sbjct: 153 AVMKLFESMTAQG-------CQPNLFTYHSVMHAFGSAGRVDEACDIFQQMVQKGLQPDA 205

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ-PDVVTFNVIMDELCKNGKMDEASRLLE 347
           VTYN LI  F        A     + + +     + VT+N ++  L + G +     L  
Sbjct: 206 VTYNILIDAFGKTGQLERA----FDFVGKSRSFTNEVTYNSLLSSLGRKGDIQGLMELFG 261

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
            M  +G+  N  T++ L++     GRV    +L++ M     K+ + +
Sbjct: 262 QMKAKGLVSNELTYAILIERLGWAGRVEDVWQLYLEMVDNDIKYDIVT 309



 Score =  102 bits (253), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 66/280 (23%), Positives = 125/280 (44%), Gaps = 9/280 (3%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
           L   + YD V  L + +       D   +N LI+ + +   +      L    +    P 
Sbjct: 5   LGAARRYDDVQRLVESMQKDRTKLDTQLFNTLIHIYGEANMMEKALQTLAAFTKEGGRPT 64

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A  ++S+I+       +     ++ ++      P+  T++ LI+ L +      A N+F 
Sbjct: 65  AYTYSSMIQVFMKGGDVQNGLLMYKQMLKAKFVPDHTTFNILIDSLAKADQVEEACNVFG 124

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           +M      F +   P+  TYT +I  L   G +D   +LF  M  +   P++ TY+S++H
Sbjct: 125 DM------FKLNVSPDVYTYTILIRSLGTIGRIDAVMKLFESMTAQGCQPNLFTYHSVMH 178

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            F  A   +EA  +  +M+ +G+QPD VT+N+++D   K G+++   R  + +       
Sbjct: 179 AFGSAGRVDEACDIFQQMVQKGLQPDAVTYNILIDAFGKTGQLE---RAFDFVGKSRSFT 235

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  T+++L+      G +    ELF  M++ G      +Y
Sbjct: 236 NEVTYNSLLSSLGRKGDIQGLMELFGQMKAKGLVSNELTY 275


>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
 gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
          Length = 695

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 89/317 (28%), Positives = 162/317 (51%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A      F + D ML      P + ++N+L   L +    D   +L   + S  + 
Sbjct: 244 GDLEA-----GFRLRDQMLQ-DGRKPNVVTYNVLLSGLCRAGRMDETRALMDEMTSYSML 297

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TY+IL +   + G       + G  L+      A   + L+ GLC + ++ +A  +
Sbjct: 298 PDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKDGKVAKAEQV 357

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              L   G  P    Y+TLING C+      A ++FE+M + +       +P+ +TY  +
Sbjct: 358 LEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH------IRPDHITYNAL 411

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLCK   + +A++L ++M+   ++P V T+N+LI  +  A    +   +L +M D+G+
Sbjct: 412 INGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGI 471

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + +V++F  ++   CKNGK+ EA  +L+ MI + V PN   +++++D +  +G    A  
Sbjct: 472 KSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAFL 531

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M+S G   ++F+Y
Sbjct: 532 LVEKMKSSGVSASIFTY 548



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 161/309 (52%), Gaps = 7/309 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   + D M +    P   T +++LF  L +T    T+LSLF      G+    YT +I
Sbjct: 282 DETRALMDEMTSYSMLPDGFT-YSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSI 340

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  CK G+V+    VL  ++ +   P    + +LI G C    +  A ++F ++K+  
Sbjct: 341 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRH 400

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+ ITY+ LINGLC+      A +L  EM     K GV   P+  T+ T+ID   + G
Sbjct: 401 IRPDHITYNALINGLCKMEMITEAEDLVMEME----KSGV--DPSVETFNTLIDAYGRAG 454

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++K   +   M+DK I  +V+++ S++  FC      EA  +L +M+ + V P+   +N
Sbjct: 455 QLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYN 514

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+D   ++G  ++A  L+E M   GV+ +  T++ L+ G C   +++ A+EL  ++ + 
Sbjct: 515 SIIDAYIESGGTEQAFLLVEKMKSSGVSASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQ 574

Query: 388 GCKHTVFSY 396
           G +  V SY
Sbjct: 575 GLRPDVVSY 583



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 151/300 (50%), Gaps = 8/300 (2%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           ++R   P L+S NLL   L     +  V + F  L + G  PD + +N  +      G +
Sbjct: 115 SVRSPLPSLSSCNLLLESLLSVGRHADVRAAFGLLVAAGARPDTFAWNKAVQACVAAGDL 174

Query: 159 SHGFVVLGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
                +L R+ RS     PDA ++  +I GL    +  +A  +F ++   G  PN ITY+
Sbjct: 175 DEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDRGVAPNQITYN 234

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           T+I+G  + G       L ++M   +G+     KPN VTY  ++ GLC+ G +D+ + L 
Sbjct: 235 TMIDGHVKGGDLEAGFRLRDQMLQ-DGR-----KPNVVTYNVLLSGLCRAGRMDETRALM 288

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M   ++ PD  TY+ L  G     D      L  E + +GV     T +++++ LCK+
Sbjct: 289 DEMTSYSMLPDGFTYSILFDGLTRTGDSRTMLSLFGESLKKGVIIGAYTCSILLNGLCKD 348

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           GK+ +A ++LE+++  G+ P T+ ++TL++G+C    +  A  +F  M+S   +    +Y
Sbjct: 349 GKVAKAEQVLEMLVHTGLVPTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITY 408



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 76/280 (27%), Positives = 136/280 (48%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L     + +      S+F+++ S  + PD  TYN LIN  CKM  ++    +
Sbjct: 368 PTTAIYNTLINGYCQVRDLQGAFSIFEQMKSRHIRPDHITYNALINGLCKMEMITEAEDL 427

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  + +S   P    F +LI       ++ +   + + ++  G K NVI++ +++   C+
Sbjct: 428 VMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCK 487

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + ++M + +    VV  PN   Y +IID   + G  ++A  L  +MK   +
Sbjct: 488 NGKIPEAVAILDDMIHKD----VV--PNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSGV 541

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +  + TYN L+ G C  +  +EA  L+  + +QG++PDVV++N I+   C  G  D A  
Sbjct: 542 SASIFTYNLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALE 601

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LL+ M    + P   T+  L+      GRV+  + L+  M
Sbjct: 602 LLQEMHKYDIRPTLRTYHPLLSALGSAGRVHDMECLYQHM 641



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 74/274 (27%), Positives = 135/274 (49%), Gaps = 7/274 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF IF+ M +    P  +T +N L   L K +       L   +  +G+ P + T+N LI
Sbjct: 389 AFSIFEQMKSRHIRPDHIT-YNALINGLCKMEMITEAEDLVMEMEKSGVDPSVETFNTLI 447

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + + + G++   F VL  +       + ++F S++K  C   +I EA A+   +      
Sbjct: 448 DAYGRAGQLEKCFTVLSDMQDKGIKSNVISFGSVVKAFCKNGKIPEAVAILDDMIHKDVV 507

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN   Y+++I+    +G T  A  L E+M +           +  TY  ++ GLCK   +
Sbjct: 508 PNAQVYNSIIDAYIESGGTEQAFLLVEKMKSSG------VSASIFTYNLLLKGLCKNSQI 561

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A+EL   + ++ + PDVV+YN++I   C   D + A  LL EM    ++P + T++ +
Sbjct: 562 DEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEMHKYDIRPTLRTYHPL 621

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
           +  L   G++ +   L + M+ + V P++S + T
Sbjct: 622 LSALGSAGRVHDMECLYQHMVHKNVEPSSSIYGT 655


>gi|413920484|gb|AFW60416.1| hypothetical protein ZEAMMB73_230014 [Zea mays]
          Length = 700

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 90/317 (28%), Positives = 161/317 (50%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A      F + D ML+  P P  + ++N+L   L +    D    L   + S  +F
Sbjct: 243 GDLEA-----GFRLRDQMLHDGPKPN-IVTYNVLLSGLCRAGRMDETRVLMDEMASHSMF 296

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TY+IL +   + G       +    L+      A   + L+ GLC + ++ +A  +
Sbjct: 297 PDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKAEQV 356

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              L   G  P  + Y+TLING C+      A  +FE+M + +       +P+ +TY  +
Sbjct: 357 LEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH------IRPDHITYNAL 410

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLCK   V KA++L ++M+   ++P V T+N+LI  +  A    +   +L +M  +G+
Sbjct: 411 INGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGI 470

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           + DV++F  ++   CKNGK+ EA  +L+ MI + V PN   +++++D +  +G    A  
Sbjct: 471 KSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAYIESGDTEQAFL 530

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M++ G   ++ +Y
Sbjct: 531 LVEKMKNSGVSASIVTY 547



 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 165/326 (50%), Gaps = 14/326 (4%)

Query: 72  ERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLF 130
           + C ++G  D+       A  +   M     +PPP   S+N++   L ++      L +F
Sbjct: 165 QACVAAGDLDV-------ALAMVRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVF 217

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
             +   G+ P+  TYN +I+   K G +  GF +  ++L     P+ V +  L+ GLC  
Sbjct: 218 DEMVDMGVVPNWITYNTMIDGHVKGGDLEAGFRLRDQMLHDGPKPNIVTYNVLLSGLCRA 277

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
            R+ E   L  ++ +    P+  TYS L +GL RTG +   L+LF E    + K GV+  
Sbjct: 278 GRMDETRVLMDEMASHSMFPDGFTYSILFDGLTRTGESRTMLSLFAE----SLKKGVML- 332

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
               T + +++GLCK+G V KA+++   +    + P  V YN+LI+G+C   D   A C+
Sbjct: 333 -GAYTCSILLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCI 391

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
             +M  + ++PD +T+N +++ LCK   + +A  L+  M   GV+P+  TF+TL+D +  
Sbjct: 392 FEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGT 451

Query: 371 TGRVNHAKELFVSMESMGCKHTVFSY 396
            G++     +   M+  G K  V S+
Sbjct: 452 AGQLEKCFTVLSDMQQKGIKSDVISF 477



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 143/279 (51%), Gaps = 7/279 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AFCIF+ M +    P  +T +N L   L K +       L   +  +G+ P + T+N LI
Sbjct: 388 AFCIFEQMKSRHIRPDHIT-YNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLI 446

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +   G++   F VL  + +     D ++F S++K  C   +I EA A+   +      
Sbjct: 447 DAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVA 506

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN   Y+++I+    +G T  A  L E+M N           + VTY  ++ GLC+   +
Sbjct: 507 PNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSG------VSASIVTYNLLLKGLCRSSQI 560

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A+EL   ++++ + PDVV+YN++I   C   D ++A  LL EM   G++P + T++ +
Sbjct: 561 DEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTYHTL 620

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +  L   G++ +   L + M+ + V P++S +  ++D +
Sbjct: 621 VSALASAGRVHDMECLYQQMLHKNVEPSSSIYGIMVDAY 659



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 163/338 (48%), Gaps = 30/338 (8%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E   + D M +    P   T +++LF  L +T    T+LSLF      G+    YT +I
Sbjct: 281 DETRVLMDEMASHSMFPDGFT-YSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSI 339

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N  CK G+V+    VL  ++ +   P  V + +LI G C    +  A  +F ++K+  
Sbjct: 340 LLNGLCKDGKVAKAEQVLEMLVHTGLVPTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRH 399

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMA---------------NGNGKFGVV---- 248
            +P+ ITY+ LINGLC+      A +L  EM                +  G  G +    
Sbjct: 400 IRPDHITYNALINGLCKLEMVTKAEDLVMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCF 459

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                      K + +++ +++   CK G + +A  +   M  K++ P+   YNS+I  +
Sbjct: 460 TVLSDMQQKGIKSDVISFGSVVKAFCKNGKIPEAVAILDDMIYKDVAPNAQVYNSIIDAY 519

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
             + D  +A  L+ +M + GV   +VT+N+++  LC++ ++DEA  L+  +  +G+ P+ 
Sbjct: 520 IESGDTEQAFLLVEKMKNSGVSASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDV 579

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +++T++   C  G  + A EL   M   G + T+ +Y
Sbjct: 580 VSYNTIISACCNKGDTDKALELLQEMNKYGIRPTLRTY 617



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 75/280 (26%), Positives = 138/280 (49%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L     + +       +F+++ S  + PD  TYN LIN  CK+  V+    +
Sbjct: 367 PTTVIYNTLINGYCQVRDLRGAFCIFEQMKSRHIRPDHITYNALINGLCKLEMVTKAEDL 426

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  + +S   P    F +LI       ++ +   + + ++  G K +VI++ +++   C+
Sbjct: 427 VMEMEKSGVDPSVETFNTLIDAYGTAGQLEKCFTVLSDMQQKGIKSDVISFGSVVKAFCK 486

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + ++M   +        PN   Y +IID   + G  ++A  L  +MK+  +
Sbjct: 487 NGKIPEAVAILDDMIYKD------VAPNAQVYNSIIDAYIESGDTEQAFLLVEKMKNSGV 540

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +  +VTYN L+ G C ++  +EA  L+  + +QG++PDVV++N I+   C  G  D+A  
Sbjct: 541 SASIVTYNLLLKGLCRSSQIDEAEELIYTLRNQGLRPDVVSYNTIISACCNKGDTDKALE 600

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LL+ M   G+ P   T+ TL+      GRV+  + L+  M
Sbjct: 601 LLQEMNKYGIRPTLRTYHTLVSALASAGRVHDMECLYQQM 640



 Score =  135 bits (339), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 144/289 (49%), Gaps = 11/289 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L+S NLL   L     +  V + F  L + G  PD + +N ++      G +     +
Sbjct: 120 PSLSSCNLLLESLLFVGRHADVRAAFGLLVAAGARPDTFAWNKVVQACVAAGDLDVALAM 179

Query: 165 LGRILRS--CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           + R+ RS     PDA ++  +I GL    +  +A  +F ++   G  PN ITY+T+I+G 
Sbjct: 180 VRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGSDALKVFDEMVDMGVVPNWITYNTMIDGH 239

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
            + G       L ++M +         KPN VTY  ++ GLC+ G +D+ + L  +M   
Sbjct: 240 VKGGDLEAGFRLRDQMLHDGP------KPNIVTYNVLLSGLCRAGRMDETRVLMDEMASH 293

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           ++ PD  TY+ L  G     +      L  E + +GV     T +++++ LCK+GK+ +A
Sbjct: 294 SMFPDGFTYSILFDGLTRTGESRTMLSLFAESLKKGVMLGAYTCSILLNGLCKDGKVAKA 353

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            ++LE+++  G+ P T  ++TL++G+C   +V   +  F   E M  +H
Sbjct: 354 EQVLEMLVHTGLVPTTVIYNTLINGYC---QVRDLRGAFCIFEQMKSRH 399


>gi|449531231|ref|XP_004172591.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like, partial [Cucumis sativus]
          Length = 602

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +T++ +L    +++   +    LF  +   G+ PD+Y Y  +IN  CK G +   FV+  
Sbjct: 258 VTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEPDVYIYTSIINWNCKFGNMKRAFVLFD 317

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +      P+A  + +LI G C    +  A  +   +++ G   N + ++TL++G C+ G
Sbjct: 318 EMTERRLVPNAYTYGALINGACKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLMDGYCKKG 377

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L   M     +       +  T   I  G C+    ++AK L L M+++ + P
Sbjct: 378 MIDEALRLQNIMQQKGFEI------DAFTCNIIASGFCRSNRREEAKRLLLTMEERGVAP 431

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +VV+++ LI  +C   ++ EA  L   M  +G  P VVT+N  ++  CK GKM+EA +L+
Sbjct: 432 NVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKMEEAYKLI 491

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  RG+ P+T T+++L+DG   +G V+ A ELF  M  +G    V +Y
Sbjct: 492 NEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTY 541



 Score =  124 bits (312), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 135/276 (48%), Gaps = 7/276 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +FD M   R  P   T   L+ G   K         +   + S G+  +   +N L+
Sbjct: 312 AFVLFDEMTERRLVPNAYTYGALINGA-CKAGEMKAAEMMVNDMQSKGVDVNRVIFNTLM 370

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G +     +   + +  F  DA     +  G C  +R  EA  L   ++  G  
Sbjct: 371 DGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTMEERGVA 430

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PNV+++S LI+  C+  +   A  LF+ M    GK      P+ VTY   I+  CK+G +
Sbjct: 431 PNVVSFSILIDIYCKEQNFAEARRLFKVMEK-KGK-----APSVVTYNAFIERYCKKGKM 484

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           ++A +L  +M+++ + PD  TY SLI G   + + + A  L  EM   G+  +VVT+ VI
Sbjct: 485 EEAYKLINEMQERGLMPDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVVTYTVI 544

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +  L K+G+ DEA +L + M   G+ P+   +S+L+
Sbjct: 545 ISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLI 580



 Score =  121 bits (303), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 93/349 (26%), Positives = 157/349 (44%), Gaps = 32/349 (9%)

Query: 50  AKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTS 109
           A++K  L+  V D         ER  SS  G+    +  E FC                 
Sbjct: 81  AEMKNVLKFIVNDGNLWSNV--ERIVSSIGGEFNEPSIVEKFC----------------- 121

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
            ++LF      + +D+ L +F      G   D  +    +    + G +      L +++
Sbjct: 122 -DMLFRVYMDNRMFDSSLEVFDYARKKGFEIDERSCFEFLLALKRSGNMELCVEFLRQMV 180

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR---TG 226
            S       ++T+++ GLC +  ++ A AL  +L   G KP+VITY+TL+NG       G
Sbjct: 181 DSGIEIRVCSWTAVVDGLCKKGEVVRAKALMDELVCKGFKPSVITYNTLLNGYIEIKDVG 240

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
                L+L E+          V   N  TYT +I+   +   +++A++LF +M  K I P
Sbjct: 241 GVNEILSLMEKN---------VVDYNVTTYTMLIEWYSRSSKIEEAEKLFDEMLKKGIEP 291

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV  Y S+I+  C   +   A  L  EM ++ + P+  T+  +++  CK G+M  A  ++
Sbjct: 292 DVYIYTSIINWNCKFGNMKRAFVLFDEMTERRLVPNAYTYGALINGACKAGEMKAAEMMV 351

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
             M  +GV+ N   F+TLMDG+C  G ++ A  L   M+  G +   F+
Sbjct: 352 NDMQSKGVDVNRVIFNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFT 400



 Score =  108 bits (270), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 109/230 (47%), Gaps = 6/230 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L     K    D  L L   +   G   D +T NI+ + FC+  R      +L  + 
Sbjct: 366 FNTLMDGYCKKGMIDEALRLQNIMQQKGFEIDAFTCNIIASGFCRSNRREEAKRLLLTME 425

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ V+F+ LI   C E    EA  LF  ++  G  P+V+TY+  I   C+ G   
Sbjct: 426 ERGVAPNVVSFSILIDIYCKEQNFAEARRLFKVMEKKGKAPSVVTYNAFIERYCKKGKME 485

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L  EM     + G++  P+T TYT++IDG    G VD+A ELF +M    +N +VV
Sbjct: 486 EAYKLINEMQ----ERGLM--PDTYTYTSLIDGERASGNVDRALELFNEMPQLGLNRNVV 539

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           TY  +I G       +EA  L  EM  +G+ PD   ++ ++  L K G +
Sbjct: 540 TYTVIISGLSKDGRADEAFKLYDEMNKEGIVPDDGIYSSLIASLHKVGPL 589



 Score = 57.0 bits (136), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 59/144 (40%), Gaps = 1/144 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   +   P + ++N       K    +    L   +   GL PD YTY  L
Sbjct: 451 EARRLFKVM-EKKGKAPSVVTYNAFIERYCKKGKMEEAYKLINEMQERGLMPDTYTYTSL 509

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+     G V     +   + +     + V +T +I GL  + R  EA  L+ ++   G 
Sbjct: 510 IDGERASGNVDRALELFNEMPQLGLNRNVVTYTVIISGLSKDGRADEAFKLYDEMNKEGI 569

Query: 209 KPNVITYSTLINGLCRTGHTIVAL 232
            P+   YS+LI  L + G  +  L
Sbjct: 570 VPDDGIYSSLIASLHKVGPLVSGL 593


>gi|359497112|ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
           mitochondrial-like [Vitis vinifera]
          Length = 740

 Score =  161 bits (407), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 151/293 (51%), Gaps = 11/293 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN     L K         L  R+   G  P+ +TY +L++  C+MG+V    ++
Sbjct: 303 PDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARML 362

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA-AALFTKLKAFGCKPNVITYSTLINGLC 223
           L ++      P+ V F +LI G  +  R+ EA A +   + + GC P++ TY+TLI GLC
Sbjct: 363 LNKVP----NPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLC 418

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G+ + A  L  EM          C+PN +TYT +ID  CKEG +++A+ +  +M  K 
Sbjct: 419 KKGYLVSARELMNEMQIKG------CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKG 472

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  + V YN LI   C      +A  +  +M  +G +PD+ TFN ++  LCK  K +EA 
Sbjct: 473 LALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEAL 532

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L + M+L GV  NT T++TL+  F   G +  A +L   M   GC     +Y
Sbjct: 533 GLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITY 585



 Score =  157 bits (398), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 152/292 (52%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L   L K  +  +   L   +   G  P++ TY ILI+ FCK GR+     V
Sbjct: 405 PDIFTYNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNV 464

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       +AV +  LI  LC + ++ +A  +F  + + GCKP++ T+++LI GLC+
Sbjct: 465 LDEMSGKGLALNAVGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCK 524

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L+++M       GV+   NT+TY T+I    + G + +A +L   M  +  
Sbjct: 525 VNKFEEALGLYQDML----LEGVI--ANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGC 578

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D +TYN LI   C A +  +   L  +MM +G+ P+ ++ N++++ LC+ G +  A  
Sbjct: 579 PLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALE 638

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            L  MI RG+ P+  T+++L++G C TGR   A  LF  ++  G      +Y
Sbjct: 639 FLRDMIHRGLTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITY 690



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 101/318 (31%), Positives = 155/318 (48%), Gaps = 16/318 (5%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G+   + PN    +F  ML+   SP   T F ++   L      D+  +L K +   G  
Sbjct: 213 GNCPKVVPN----VFYEMLSKGISPTVYT-FGVVMKALCLVNEVDSACALLKDMTRHGCV 267

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+   Y  LI+   K+GRV+    +L  +L     PD   F   I GLC   RI EAA L
Sbjct: 268 PNAIVYQTLIHALSKVGRVNEVLKLLEEMLLMGCIPDVNTFNDAIHGLCKMLRIHEAAKL 327

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             ++   G  PN  TY  L++GLCR G    A  L  ++ N          PN V + T+
Sbjct: 328 VDRMLLRGFTPNSFTYGVLMHGLCRMGKVDEARMLLNKVPN----------PNVVLFNTL 377

Query: 260 IDGLCKEGFVDKAKELFLQ-MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           I+G    G +D+AK +  + M      PD+ TYN+LI G C       A  L+ EM  +G
Sbjct: 378 INGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKGYLVSARELMNEMQIKG 437

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            +P+V+T+ +++D  CK G+++EA  +L+ M  +G+  N   ++ L+   C   +V  A 
Sbjct: 438 CEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYNCLISALCKDEKVQDAL 497

Query: 379 ELFVSMESMGCKHTVFSY 396
            +F  M S GCK  +F++
Sbjct: 498 NMFGDMSSKGCKPDIFTF 515



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 154/300 (51%), Gaps = 6/300 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +LN  P+P  +    L+ G +++ +  +    + + + S G  PD++TYN LI   CK G
Sbjct: 362 LLNKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFTYNTLILGLCKKG 421

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +     ++  +      P+ + +T LI   C E R+ EA  +  ++   G   N + Y+
Sbjct: 422 YLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMSGKGLALNAVGYN 481

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+ LC+      ALN+F +M++        CKP+  T+ ++I GLCK    ++A  L+
Sbjct: 482 CLISALCKDEKVQDALNMFGDMSSKG------CKPDIFTFNSLIFGLCKVNKFEEALGLY 535

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
             M  + +  + +TYN+LIH F       EA  L+ +M+ +G   D +T+N ++  LC+ 
Sbjct: 536 QDMLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRA 595

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G +++   L E M+ +G+NPN  + + L++G C TG + HA E    M   G    + +Y
Sbjct: 596 GNIEKGLALFEDMMSKGLNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPDIVTY 655



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 89/311 (28%), Positives = 150/311 (48%), Gaps = 11/311 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  +   M  +    P   S+N++   L        V ++F  + S G+ P +YT+ 
Sbjct: 180 PGQATRLLLDMRGVYSCEPTFRSYNVVLDVLLAGNCPKVVPNVFYEMLSKGISPTVYTFG 239

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +++   C +  V     +L  + R    P+A+ + +LI  L    R+ E   L  ++   
Sbjct: 240 VVMKALCLVNEVDSACALLKDMTRHGCVPNAIVYQTLIHALSKVGRVNEVLKLLEEMLLM 299

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P+V T++  I+GLC+      A  L + M            PN+ TY  ++ GLC+ 
Sbjct: 300 GCIPDVNTFNDAIHGLCKMLRIHEAAKLVDRMLLRG------FTPNSFTYGVLMHGLCRM 353

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-MMDQGVQPDVVT 325
           G VD+A+ L     +K  NP+VV +N+LI+G+      +EA  ++ E M+  G  PD+ T
Sbjct: 354 GKVDEARMLL----NKVPNPNVVLFNTLINGYVSRGRLDEAKAVMHESMLSVGCGPDIFT 409

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N ++  LCK G +  A  L+  M ++G  PN  T++ L+D FC  GR+  A+ +   M 
Sbjct: 410 YNTLILGLCKKGYLVSARELMNEMQIKGCEPNVITYTILIDRFCKEGRLEEARNVLDEMS 469

Query: 386 SMGCKHTVFSY 396
             G       Y
Sbjct: 470 GKGLALNAVGY 480



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/265 (30%), Positives = 127/265 (47%), Gaps = 6/265 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             +N L   L K +     L++F  ++S G  PD++T+N LI   CK+ +      +   
Sbjct: 478 VGYNCLISALCKDEKVQDALNMFGDMSSKGCKPDIFTFNSLIFGLCKVNKFEEALGLYQD 537

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L      + + + +LI        + EA  L   +   GC  + ITY+ LI  LCR G+
Sbjct: 538 MLLEGVIANTITYNTLIHAFLRRGAMQEALKLVNDMLFRGCPLDDITYNGLIKALCRAGN 597

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
               L LFE+M +          PN ++   +I+GLC+ G +  A E    M  + + PD
Sbjct: 598 IEKGLALFEDMMSKG------LNPNNISCNILINGLCRTGNIQHALEFLRDMIHRGLTPD 651

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +VTYNSLI+G C      EA  L  ++  +G+ PD +T+N ++   CK G  D+A  LL 
Sbjct: 652 IVTYNSLINGLCKTGRAQEALNLFDKLQVEGICPDAITYNTLISWHCKEGMFDDAHLLLS 711

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTG 372
             +  G  PN  T+  L+  F   G
Sbjct: 712 RGVDSGFIPNEVTWYILVSNFIKEG 736



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/236 (31%), Positives = 122/236 (51%), Gaps = 6/236 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L K   ++  L L++ +   G+  +  TYN LI+ F + G +     +
Sbjct: 510 PDIFTFNSLIFGLCKVNKFEEALGLYQDMLLEGVIANTITYNTLIHAFLRRGAMQEALKL 569

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L      D + +  LIK LC    I +  ALF  + + G  PN I+ + LINGLCR
Sbjct: 570 VNDMLFRGCPLDDITYNGLIKALCRAGNIEKGLALFEDMMSKGLNPNNISCNILINGLCR 629

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           TG+   AL    +M +          P+ VTY ++I+GLCK G   +A  LF +++ + I
Sbjct: 630 TGNIQHALEFLRDMIHRG------LTPDIVTYNSLINGLCKTGRAQEALNLFDKLQVEGI 683

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            PD +TYN+LI   C    +++A+ LL   +D G  P+ VT+ +++    K G  +
Sbjct: 684 CPDAITYNTLISWHCKEGMFDDAHLLLSRGVDSGFIPNEVTWYILVSNFIKEGDQE 739


>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
          Length = 376

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A  + T +   GCKPN+  Y+TLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM   +      C P  +TY T+I GLCK+    +A  L  ++ DK ++P
Sbjct: 179 KFEDAIRVFREMGTMH------CSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +    A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  R   PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 143/304 (47%), Gaps = 8/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F  ++  + SP  +    +L G     K  D    L++ + S G    + ++NI++   
Sbjct: 12  VFKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEG-NRSVSSFNIMMRGL 69

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G+V     +   +  S F  D++ +  L+ G C    I ++  +    +  G   + 
Sbjct: 70  FDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             YS +INGLC+  +   AL +   M          CKPN   Y T+I+GL      + A
Sbjct: 130 FAYSAMINGLCKEANLDRALYVLTGMIKSG------CKPNIHVYNTLINGLVGASKFEDA 183

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F +M   + +P ++TYN+LI G C    + EA  L+ E++D+G+ P V+T++++M  
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC + K++ A +L   +  +G  P+    + L+ G C  G++  A  L+  M    C   
Sbjct: 244 LCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRRKCAPN 303

Query: 393 VFSY 396
           + S+
Sbjct: 304 LVSH 307



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/203 (26%), Positives = 105/203 (51%), Gaps = 6/203 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L     ++  + +F+ + +    P + TYN LI+  CK       + +
Sbjct: 162 PNIHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLISGLCKKEMFGEAYNL 221

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L     P  + ++ L+KGLC + ++  A  L+ ++ + G KP+V  ++ LI+GLC 
Sbjct: 222 VKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHGLCS 281

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL+L+ +M          C PN V++ T+++G  K+G +  A  ++ ++    +
Sbjct: 282 VGKMQLALSLYFDMNRRK------CAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 335

Query: 285 NPDVVTYNSLIHGFCYANDWNEA 307
            PD+++YN  + G C  N  ++A
Sbjct: 336 EPDIISYNITLKGLCSCNRISDA 358



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ +F ++ +  ++PD V YN++++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVFKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN++M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             E  G     F+Y
Sbjct: 119 MAEQKGGVLDAFAY 132



 Score = 40.0 bits (92), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 30/68 (44%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N R   P L S N L     K       L ++ R+   GL PD+ +YNI +   C   R
Sbjct: 295 MNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISYNITLKGLCSCNR 354

Query: 158 VSHGFVVL 165
           +S   + L
Sbjct: 355 ISDAILFL 362


>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
 gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
          Length = 480

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 95/296 (32%), Positives = 147/296 (49%), Gaps = 13/296 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S  LL     K+  +    S   R+   GLFP+   YN LI+C CK G ++     
Sbjct: 27  PDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCLCKAGMLAEAESY 86

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+ + C  P+ V++  +I G C    I +A A   +++  G  P    YS+++   C+
Sbjct: 87  LKRMPQHC-APNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCK 145

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           TG+   A+++F EM A G       C+P+ V +  ++ GL +   + +A+ELF  M  + 
Sbjct: 146 TGNVSKAMDVFAEMPAKG-------CEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRG 198

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PDVVTYN++I G C     +EA  LL  M  + V P  VT+  ++D LCK  ++ +A 
Sbjct: 199 CKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAY 258

Query: 344 RLLELMILRGVNPNTS---TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + E M   G  P T    +   L++G C   R   AKE+F  M   G   TV +Y
Sbjct: 259 EVFEKMA-EGPCPCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTY 313



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 96/328 (29%), Positives = 152/328 (46%), Gaps = 43/328 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N++     K ++ +  L+  + +   G  P  + Y+ ++  FCK G VS    V
Sbjct: 96  PNVVSYNIIIDGYCKARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDV 155

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD V F  L+ GL    +I EA  LF  + + GCKP+V+TY+T+I GLC+
Sbjct: 156 FAEMPAKGCEPDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCK 215

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID----------------------- 261
                 A+ L E M   +        P  VTYTT+ID                       
Sbjct: 216 WKKLDEAVFLLERMKQED------VSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPC 269

Query: 262 --------------GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
                         GLCK     +AKE+F +M+ + I+P VVTYN+L+ G        +A
Sbjct: 270 PCTEPAYSVLILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDA 329

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L   M+DQ   P++ T+ +++  LCK  +++EA +LL  M  +G  P+   +  L+  
Sbjct: 330 MELTYFMLDQVPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSR 389

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFS 395
               GR++ A EL+  M  + C+  V S
Sbjct: 390 LARAGRLDDAFELYKEMSRINCQQLVGS 417



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/269 (32%), Positives = 137/269 (50%), Gaps = 7/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           ++ + +   G  PD+ ++ +LI  F K G    G   L R+L +   P+A+ + +LI  L
Sbjct: 15  AIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGLFPNAILYNNLISCL 74

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    + EA +   ++    C PNV++Y+ +I+G C+  +   AL    EM        +
Sbjct: 75  CKAGMLAEAESYLKRMPQH-CAPNVVSYNIIIDGYCKARNIEKALAFLREMEE------L 127

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P    Y++I+   CK G V KA ++F +M  K   PD+V +N L+ G   A   +EA
Sbjct: 128 GHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHEA 187

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L   M  +G +PDVVT+N ++  LCK  K+DEA  LLE M    V+P   T++TL+D 
Sbjct: 188 RELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDH 247

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C   R+  A E+F  M    C  T  +Y
Sbjct: 248 LCKFARLQQAYEVFEKMAEGPCPCTEPAY 276



 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 90/294 (30%), Positives = 139/294 (47%), Gaps = 8/294 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L + +       LF+ +NS G  PD+ TYN +I   CK  ++     +
Sbjct: 166 PDIVNFNVLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFL 225

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLI--NGL 222
           L R+ +   +P  V +T+LI  LC  +R+ +A  +F K+    C      YS LI  NGL
Sbjct: 226 LERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPCPCTEPAYSVLILINGL 285

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+      A  +F+EM  G G       P  VTY T+++GL     +  A EL   M D+
Sbjct: 286 CKARRPGEAKEMFQEM-RGRG-----ISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQ 339

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P++ TY  LI   C  +   EA  LL  M D+G  P +  + V++  L + G++D+A
Sbjct: 340 VPAPNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDA 399

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L + M          + + L+DG    G V+ AK+    M   G     F+Y
Sbjct: 400 FELYKEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTY 453



 Score =  137 bits (344), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 11/296 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  M N R   P + ++N +   L K K  D  + L +R+    + P   TY  
Sbjct: 185 HEARELFRSM-NSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTT 243

Query: 148 LINCFCKMGRVSHGFVVLGRILRS---CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLK 204
           LI+  CK  R+   + V  ++      C  P A +   LI GLC   R  EA  +F +++
Sbjct: 244 LIDHLCKFARLQQAYEVFEKMAEGPCPCTEP-AYSVLILINGLCKARRPGEAKEMFQEMR 302

Query: 205 AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
             G  P V+TY+TL+ GL  T     A+ L   M +       V  PN  TY  +I  LC
Sbjct: 303 GRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQ------VPAPNMFTYEILISSLC 356

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K   V++A +L   M+DK   P +  +  L+     A   ++A  L  EM     Q  V 
Sbjct: 357 KTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFELYKEMSRINCQQLVG 416

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           + N+++D + + G +DEA   L+ M   G+ P+  T+  L+ G C  G+ + A++L
Sbjct: 417 SSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQGKADQARKL 472



 Score = 62.8 bits (151), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 1/137 (0%)

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I  L +   V +A+ +  +MK    +PDV ++  LI GF  +  +      L  M++ G+
Sbjct: 1   IRKLVEADLVAQAEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGCSQLDRMLEAGL 60

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
            P+ + +N ++  LCK G + EA   L+ M  +   PN  +++ ++DG+C    +  A  
Sbjct: 61  FPNAILYNNLISCLCKAGMLAEAESYLKRMP-QHCAPNVVSYNIIIDGYCKARNIEKALA 119

Query: 380 LFVSMESMGCKHTVFSY 396
               ME +G   T  +Y
Sbjct: 120 FLREMEELGHPPTPHAY 136


>gi|115449873|ref|NP_001048572.1| Os02g0824000 [Oryza sativa Japonica Group]
 gi|113538103|dbj|BAF10486.1| Os02g0824000 [Oryza sativa Japonica Group]
          Length = 1013

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 93/291 (31%), Positives = 150/291 (51%), Gaps = 6/291 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +  +N L     +    D    +   +   G+ P++ TY   I  +C+   V   F 
Sbjct: 201 PMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIVYYCRTKGVEEAFD 260

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +   ++R+    D V  ++L+ GLC + R  EA ALF ++   G  PN +TY TLI+ L 
Sbjct: 261 LYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYALFREMDKVGAAPNHVTYCTLIDSLA 320

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G     L+L  EM +     GVV   + VTYT ++D L K+G  D+ K+        N
Sbjct: 321 KAGRGKELLSLLGEMVS----RGVVM--DLVTYTALMDWLGKQGKTDEVKDTLRFALSDN 374

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++P+ VTY  LI   C A++ +EA  +L+EM ++ + P+VVTF+ +++   K G +D+A+
Sbjct: 375 LSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTFSSVINGFVKRGLLDKAT 434

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
               +M  RG+NPN  T+ TL+DGF      + A E++  M   G K   F
Sbjct: 435 EYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKF 485



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/311 (30%), Positives = 141/311 (45%), Gaps = 29/311 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++  L   L K    D V    +   S  L P+  TY +LI+  CK   V     VL 
Sbjct: 344 LVTYTALMDWLGKQGKTDEVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLL 403

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +     +P+ V F+S+I G      + +A      +K  G  PNV+TY TLI+G  +  
Sbjct: 404 EMEEKSISPNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQ 463

Query: 227 HTIVALNLFEEM---------------ANG---NGKF-----------GVVCKPNTVTYT 257
               AL ++ +M                NG   NGK            G     + V YT
Sbjct: 464 GQDAALEVYHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYT 523

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T+IDGL K G +  A +   ++ D+N+ PD V YN  I+  C    + EA   L EM + 
Sbjct: 524 TLIDGLFKAGDMPTAFKFGQELMDRNMLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNM 583

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD  T+N ++   C+ G+  +A +LL  M +  + PN  T++TL+ G   TG V  A
Sbjct: 584 GLKPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKA 643

Query: 378 KELFVSMESMG 388
           K L   M S G
Sbjct: 644 KYLLNEMVSAG 654



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/296 (29%), Positives = 135/296 (45%), Gaps = 7/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P    + N L   L +    D   +L  R        D+  +N LI  +C++G    
Sbjct: 129 RGVPFDGVTVNTLLAGLCRNGQVDAAAALADRGGGIHAL-DVIGWNTLIAGYCRVGDTPA 187

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
              V  R+       D V + +L+ G C   ++  A  +   +K  G  PNV TY+  I 
Sbjct: 188 ALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVDPNVATYTPFIV 247

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
             CRT     A +L+E M     + GV+   + VT + ++ GLC++G   +A  LF +M 
Sbjct: 248 YYCRTKGVEEAFDLYEGMV----RNGVLL--DVVTLSALVAGLCRDGRFSEAYALFREMD 301

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
                P+ VTY +LI     A    E   LL EM+ +GV  D+VT+  +MD L K GK D
Sbjct: 302 KVGAAPNHVTYCTLIDSLAKAGRGKELLSLLGEMVSRGVVMDLVTYTALMDWLGKQGKTD 361

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E    L   +   ++PN  T++ L+D  C    V+ A+++ + ME       V ++
Sbjct: 362 EVKDTLRFALSDNLSPNGVTYTVLIDALCKAHNVDEAEQVLLEMEEKSISPNVVTF 417



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 87/327 (26%), Positives = 142/327 (43%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N+   CL     +    S    + + GL PD  TYN +I   C+ G  +    +
Sbjct: 552 PDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGLKPDQSTYNTMIVSHCRKGETAKALKL 611

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT---------- 214
           L  +  S   P+ + + +L+ GL     + +A  L  ++ + G  P+ +T          
Sbjct: 612 LHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQACSQ 671

Query: 215 -------------------------YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
                                    Y+TL+  LC  G T  A  + EEM       G   
Sbjct: 672 SRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEM------LGSGI 725

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+T+T+  +I G CK   +D A   + QM  +NI+P++ T+N+L+ G        EA  
Sbjct: 726 APDTITFNALILGHCKSSHLDNAFATYAQMLHQNISPNIATFNTLLGGLESVGRIGEAGT 785

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +LIEM   G++P+ +T++++     K     EA RL   M+ +G  P  ST++ L+  F 
Sbjct: 786 VLIEMEKSGLEPNNLTYDILATGHGKQSNKVEAMRLYCEMVGKGFVPKVSTYNALISDFT 845

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +  AKELF  M+  G   T  +Y
Sbjct: 846 KAGMMTQAKELFKDMQKRGVHPTSCTY 872



 Score =  104 bits (260), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 73/292 (25%), Positives = 130/292 (44%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F+ +     K    D      + +   G+ P++ TY  LI+ F K         V
Sbjct: 412 PNVVTFSSVINGFVKRGLLDKATEYKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEV 471

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L      +     SL+ GL    +I EA ALF      G   + + Y+TLI+GL +
Sbjct: 472 YHDMLCEGVKVNKFIVDSLVNGLRQNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFK 531

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A    +E+ + N        P+ V Y   I+ LC  G   +AK    +M++  +
Sbjct: 532 AGDMPTAFKFGQELMDRN------MLPDAVVYNVFINCLCMLGKFKEAKSFLTEMRNMGL 585

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TYN++I   C   +  +A  LL EM    ++P+++T+N ++  L   G +++A  
Sbjct: 586 KPDQSTYNTMIVSHCRKGETAKALKLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKY 645

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M+  G +P++ T   ++     + R++   ++   M + G    +  Y
Sbjct: 646 LLNEMVSAGFSPSSLTHRRVLQACSQSRRLDVILDIHEWMMNAGLHADITVY 697



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 139/326 (42%), Gaps = 41/326 (12%)

Query: 94  FDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           +  M+  R   P + ++  L     K +  D  L ++  +   G+  + +  + L+N   
Sbjct: 436 YKRMMKERGINPNVVTYGTLIDGFFKFQGQDAALEVYHDMLCEGVKVNKFIVDSLVNGLR 495

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           + G++     +      S  + D V +T+LI GL     +  A     +L      P+ +
Sbjct: 496 QNGKIEEAMALFKDASGSGLSLDHVNYTTLIDGLFKAGDMPTAFKFGQELMDRNMLPDAV 555

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
            Y+  IN LC  G    A +   EM N      +  KP+  TY T+I   C++G   KA 
Sbjct: 556 VYNVFINCLCMLGKFKEAKSFLTEMRN------MGLKPDQSTYNTMIVSHCRKGETAKAL 609

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE-------------------- 313
           +L  +MK  +I P+++TYN+L+ G        +A  LL E                    
Sbjct: 610 KLLHEMKMSSIKPNLITYNTLVAGLFGTGAVEKAKYLLNEMVSAGFSPSSLTHRRVLQAC 669

Query: 314 ---------------MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
                          MM+ G+  D+  +N ++  LC +G   +A+ +LE M+  G+ P+T
Sbjct: 670 SQSRRLDVILDIHEWMMNAGLHADITVYNTLLQVLCYHGMTRKATVVLEEMLGSGIAPDT 729

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSM 384
            TF+ L+ G C +  +++A   +  M
Sbjct: 730 ITFNALILGHCKSSHLDNAFATYAQM 755



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 73/256 (28%), Positives = 119/256 (46%), Gaps = 15/256 (5%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D  + N L+   C++ R+    + L R  R    P  VA+  L+  L   +    A A+ 
Sbjct: 72  DPASLNALLYSHCRL-RLLRPAIALLRSSR----PTTVAYNILLAALSDHA---HAPAVL 123

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++   G   + +T +TL+ GLCR G    A  L +       + G +   + + + T+I
Sbjct: 124 AEMCKRGVPFDGVTVNTLLAGLCRNGQVDAAAALAD-------RGGGIHALDVIGWNTLI 176

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G C+ G    A  +  +M  + +  DVV YN+L+ GFC A   + A  +L  M + GV 
Sbjct: 177 AGYCRVGDTPAALSVADRMTAQGLPMDVVGYNTLVAGFCRAGQVDAARGVLDMMKEAGVD 236

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+V T+   +   C+   ++EA  L E M+  GV  +  T S L+ G C  GR + A  L
Sbjct: 237 PNVATYTPFIVYYCRTKGVEEAFDLYEGMVRNGVLLDVVTLSALVAGLCRDGRFSEAYAL 296

Query: 381 FVSMESMGCKHTVFSY 396
           F  M+ +G      +Y
Sbjct: 297 FREMDKVGAAPNHVTY 312


>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
 gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
          Length = 735

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 87/296 (29%), Positives = 145/296 (48%), Gaps = 6/296 (2%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R  P     F  L    ++     + + + + +   G  PD+   N+ +N     GR+  
Sbjct: 155 RGMPRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDK 214

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
                 R+ R    PD V +  LIKGLC   RI++A  + + +   GC P+ I+Y T+++
Sbjct: 215 ALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKISYFTVMS 274

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
            LC+        NL E M++  G F     P+ VTY  +I GL K G  D+A     + +
Sbjct: 275 FLCKEKRVADVQNLLERMSDA-GIF-----PDQVTYNMLIHGLAKHGHADEALSFLRESE 328

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            K    D V Y++ +H FC      EA  ++ EM+ +G +PDVVT++ ++D  C+ G++D
Sbjct: 329 GKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELD 388

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +A ++++ M   G  PNT T + L++G C  G+ + A EL    E      +  +Y
Sbjct: 389 QARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSAITY 444



 Score =  140 bits (354), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 145/314 (46%), Gaps = 29/314 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N+    L      D  L   +R+   G+ PD+ TYN LI   C   R+     +
Sbjct: 194 PDICICNMAVNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEM 253

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L++   PD +++ +++  LC E R+ +   L  ++   G  P+ +TY+ LI+GL +
Sbjct: 254 ISSMLQNGCLPDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAK 313

Query: 225 TGHTIVALNLFEE-------------------------MANGNGKFGVV----CKPNTVT 255
            GH   AL+   E                         MA      G +    C+P+ VT
Sbjct: 314 HGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVT 373

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+ ++DG C+ G +D+A+++   M      P+ VT+ +L++G C     +EA  LL +  
Sbjct: 374 YSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSE 433

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           ++   P  +T++V+M    + GK+ E+  ++  M+ +G  P T   + L+   C   +  
Sbjct: 434 EEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPA 493

Query: 376 HAKELFVSMESMGC 389
            AK+     +S GC
Sbjct: 494 DAKDFMEQCQSKGC 507



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 9/302 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E F   D     R +P     F+ +   L++T+ +D    + + +   G+      +  L
Sbjct: 111 EFFRWADRQWKYRHAP---EVFDEMLVLLSRTRLHDPARRVMRLMIRRGMPRGTRQFAHL 167

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + + G++     VL  + +    PD       +  L    RI +A     +++  G 
Sbjct: 168 MLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDKALEFAERMRRVGV 227

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TY+ LI GLC     + AL +   M   NG     C P+ ++Y T++  LCKE  
Sbjct: 228 DPDVVTYNCLIKGLCGARRIVDALEMISSMLQ-NG-----CLPDKISYFTVMSFLCKEKR 281

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V   + L  +M D  I PD VTYN LIHG       +EA   L E   +  + D V ++ 
Sbjct: 282 VADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSA 341

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +   C NG+M EA  ++  MI +G  P+  T+S ++DGFC  G ++ A+++   M   G
Sbjct: 342 TVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNG 401

Query: 389 CK 390
           CK
Sbjct: 402 CK 403



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 141/350 (40%), Gaps = 76/350 (21%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S+  +   L K K    V +L +R++  G+FPD  TYN+LI+   K G        
Sbjct: 264 PDKISYFTVMSFLCKEKRVADVQNLLERMSDAGIFPDQVTYNMLIHGLAKHGHADEALSF 323

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L       F  D V +++ +   C   R+ EA  +  ++ + GC+P+V+TYS +++G CR
Sbjct: 324 LRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISKGCRPDVVTYSAVVDGFCR 383

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF-------- 276
            G    A  + + M   NG     CKPNTVT+T +++GLCK G   +A EL         
Sbjct: 384 IGELDQARKMMKHMYK-NG-----CKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWW 437

Query: 277 ---------------------------LQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
                                      +QM  K   P  V  N LIH  C      +A  
Sbjct: 438 TPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKD 497

Query: 310 LLIEMMDQGVQPDVVTFNVIMD-----------------------------------ELC 334
            + +   +G   +VV F  ++                                     L 
Sbjct: 498 FMEQCQSKGCFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALG 557

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + GKM EA+ L+E M+ RG++P   T+ T++  +C  G V     L   M
Sbjct: 558 RKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLNLLDKM 607



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 131/277 (47%), Gaps = 8/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     +    D    + K +   G  P+  T+  L+N  CK+G+ S  + +
Sbjct: 369 PDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWEL 428

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +     +TP A+ ++ ++ G   E ++ E+  +  ++   G  P  +  + LI+ LC 
Sbjct: 429 LNKSEEEWWTPSAITYSVVMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCN 488

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A +  E+  +        C  N V +TT+I G  ++G ++ A  L   M   N 
Sbjct: 489 ERKPADAKDFMEQCQSKG------CFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNR 542

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDVVTY  ++          EA  L+ +M+++G+ P  VT+  ++   C+ G +++   
Sbjct: 543 HPDVVTYTVVVDALGRKGKMKEATSLVEKMLNRGLHPTPVTYRTVIHRYCEKGAVEDLLN 602

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LL+ M+ +     +S ++ +++  C  G+++ A  L 
Sbjct: 603 LLDKMLAK--EGFSSAYNQVIEKLCAFGKLSEANNLL 637



 Score = 82.0 bits (201), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/332 (23%), Positives = 134/332 (40%), Gaps = 36/332 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +  +M      P  +T   LL G L K         L  +       P   TY++
Sbjct: 388 DQARKMMKHMYKNGCKPNTVTHTALLNG-LCKVGKSSEAWELLNKSEEEWWTPSAITYSV 446

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +++ F + G++     V+ ++L+  F P  V    LI  LC E +  +A     + ++ G
Sbjct: 447 VMHGFRREGKLKESCDVVMQMLQKGFFPTTVEINLLIHALCNERKPADAKDFMEQCQSKG 506

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN---------------GKFGVV---- 248
           C  NV+ ++T+I+G  R G    AL+L ++M   N               G+ G +    
Sbjct: 507 CFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEAT 566

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT--YNSLIH 296
                       P  VTY T+I   C++G V    E  L + DK +  +  +  YN +I 
Sbjct: 567 SLVEKMLNRGLHPTPVTYRTVIHRYCEKGAV----EDLLNLLDKMLAKEGFSSAYNQVIE 622

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C     +EAN LL +++    + D  T +++MD     G   ++  +   M  R + P
Sbjct: 623 KLCAFGKLSEANNLLSKVLRTASKRDAQTCHILMDSFLNRGLPLQSYNVACRMFQRNLIP 682

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +      +     L G    A +L +     G
Sbjct: 683 DLKLCQKVDSQLALAGEKQAAGKLIIKFVERG 714



 Score = 51.6 bits (122), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 56/127 (44%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A+ +   M  + +      +  L+  +  A     A  +L  M   G  PD+   N+ 
Sbjct: 143 DPARRVMRLMIRRGMPRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNMA 202

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ L   G++D+A    E M   GV+P+  T++ L+ G C   R+  A E+  SM   GC
Sbjct: 203 VNVLVVAGRIDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGC 262

Query: 390 KHTVFSY 396
                SY
Sbjct: 263 LPDKISY 269


>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 528

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 108/371 (29%), Positives = 175/371 (47%), Gaps = 23/371 (6%)

Query: 30  HTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNE 89
           H R P  S+    P+ P+ +  L  S   T     SL   + E+C +   G    I   +
Sbjct: 73  HRRNPNFSL----PNTPSHSLSLDFSHFSTSPVSPSLVSHVIEKCAAVRHG----IPFFQ 124

Query: 90  AFCIFDYMLNMRPS----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           A   F++  + RP     P P   +N +     K +++D    +   + +  +   + T+
Sbjct: 125 ALSFFNWATS-RPGFTHHPEP---YNEMIDLAGKVRNFDLGWQVIDLMKARNVEISIETF 180

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +ILI  + + G  S       R+      PD +AF+ LI  LC + R  EA + F  LK 
Sbjct: 181 SILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFDSLKD 240

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
              +P+VI Y+ L+ G CR G+   A  +F EM          C PN  TYT +ID LC+
Sbjct: 241 -KFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAG------CMPNVYTYTIVIDALCR 293

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G + +A ++F +M D    P+ +T+N+L+     A    +   +  +M   G  PD VT
Sbjct: 294 CGQITRAHDVFAEMLDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPPDTVT 353

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N +++  CK+G +DEA ++L  M+ +G +PN STF+ L         VN A  L+  M+
Sbjct: 354 YNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLYAKMK 413

Query: 386 SMGCKHTVFSY 396
            + CK    +Y
Sbjct: 414 ELKCKANTVTY 424



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 86/290 (29%), Positives = 139/290 (47%), Gaps = 7/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + +F++L     +       +  F R+      PD   ++ILI+  C+  R +       
Sbjct: 177 IETFSILIRRYVRAGLASEAVHAFNRMEDYNCKPDKIAFSILISILCRKRRATEAQSFFD 236

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
             L+  F PD + +T+L++G C    I EA  +FT++K  GC PNV TY+ +I+ LCR G
Sbjct: 237 S-LKDKFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVYTYTIVIDALCRCG 295

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A ++F EM        V C+PN++T+  ++    K G  +K  +++ QMK     P
Sbjct: 296 QITRAHDVFAEM------LDVGCEPNSITFNNLLRVHVKAGRTEKVLQVYNQMKRMGCPP 349

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D VTYN LI   C   + +EA  +L  M+ +G  P+  TFN +   + K   ++ A RL 
Sbjct: 350 DTVTYNFLIESHCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSIAKLRDVNGAHRLY 409

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M       NT T++ LM  F  T   +   +L   M+    +  V +Y
Sbjct: 410 AKMKELKCKANTVTYNILMRMFVDTKSTDMVLKLKKEMDEDDVEPNVNTY 459


>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
          Length = 704

 Score =  161 bits (407), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 99/327 (30%), Positives = 152/327 (46%), Gaps = 43/327 (13%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++ +L     K    D  +   K +   GL  DL  Y  LI  FC  G +  G  +  
Sbjct: 212 LVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFD 271

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +L    +P A+ + +LI+G C   ++ EA+ +F  +   G +PNV TY+ LI+GLC  G
Sbjct: 272 EVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVG 331

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            T  AL     M   +       +PN VTY  II+ LCK+G V  A E+   MK +   P
Sbjct: 332 KTKEALQPLNLMIEKDE------EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRP 385

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQG--VQPDVVTFNVIMDELCKNGKMDEASR 344
           D +TYN L+ G C   D +EA+ LL  M+       PDV+++N ++  LCK  ++ +A  
Sbjct: 386 DNITYNILLGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALD 445

Query: 345 LLELMILR--------------------GVNP---------------NTSTFSTLMDGFC 369
           + +L++ +                     VN                N+ T++ ++DGFC
Sbjct: 446 IYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFC 505

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
            TG +N AK L   M     + +VF Y
Sbjct: 506 KTGMLNVAKGLLCKMRVSELQPSVFDY 532



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 82/265 (30%), Positives = 138/265 (52%), Gaps = 6/265 (2%)

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L ++++++   S ++++  T  F +  + + L+ C+ +M +    F VL  +L+  
Sbjct: 78  LMAKLVRSRNHELAFSFYRKMLETDTFINFVSLSGLLECYVQMRKTGFAFGVLALMLKRG 137

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F  +      L+KGLC      +A +L  +++     P+V +Y+T+I G C       AL
Sbjct: 138 FAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKAL 197

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L  EM  G+G     C  + VT+  +ID  CK G +D+A     +MK   +  D+V Y 
Sbjct: 198 ELANEM-KGSG-----CSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLEADLVVYT 251

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI GFC   + +    L  E++++G  P  +T+N ++   CK G++ EAS + E MI R
Sbjct: 252 SLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCKLGQLKEASEIFEFMIER 311

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHA 377
           GV PN  T++ L+DG C  G+   A
Sbjct: 312 GVRPNVYTYTGLIDGLCGVGKTKEA 336



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/292 (31%), Positives = 149/292 (51%), Gaps = 9/292 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N +     + K  +  L L   +  +G    L T+ ILI+ FCK G++      
Sbjct: 175 PDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGF 234

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +       D V +TSLI+G C    +    ALF ++   G  P  ITY+TLI G C+
Sbjct: 235 LKEMKFMGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAITYNTLIRGFCK 294

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  +FE M     + GV  +PN  TYT +IDGLC  G   +A +    M +K+ 
Sbjct: 295 LGQLKEASEIFEFMI----ERGV--RPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDE 348

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+ VTYN +I+  C      +A  ++  M  +  +PD +T+N+++  LC  G +DEAS+
Sbjct: 349 EPNAVTYNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASK 408

Query: 345 LLELMILRG--VNPNTSTFSTLMDGFCLTGRVNHAKELF-VSMESMGCKHTV 393
           LL LM+      +P+  +++ L+ G C   R++ A +++ + +E +G    V
Sbjct: 409 LLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRV 460



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/296 (28%), Positives = 147/296 (49%), Gaps = 9/296 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   ML  R     + + N+L   L +       +SL + +    L PD+++YN +I
Sbjct: 126 AFGVLALMLK-RGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVI 184

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
             FC+   +     +   +  S  +   V +  LI   C   ++ EA     ++K  G +
Sbjct: 185 RGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKFMGLE 244

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            +++ Y++LI G C  G       LF+E +  G+        P  +TY T+I G CK G 
Sbjct: 245 ADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDS-------PCAITYNTLIRGFCKLGQ 297

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +A E+F  M ++ + P+V TY  LI G C      EA   L  M+++  +P+ VT+N+
Sbjct: 298 LKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEEPNAVTYNI 357

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           I+++LCK+G + +A  ++ELM  R   P+  T++ L+ G C  G ++ A +L   M
Sbjct: 358 IINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLM 413



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/312 (31%), Positives = 156/312 (50%), Gaps = 13/312 (4%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGC--LAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           EA  IF++M+     P   T   L+ G   + KTK     L+L    +     P+  TYN
Sbjct: 300 EASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLNLMIEKDEE---PNAVTYN 356

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-FTKLKA 205
           I+IN  CK G V+    ++  + +    PD + +  L+ GLCA+  + EA+ L +  LK 
Sbjct: 357 IIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKD 416

Query: 206 FG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
                P+VI+Y+ LI+GLC+      AL++++ +     K G     + VT   +++   
Sbjct: 417 SSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVE---KLGA---GDRVTTNILLNSTL 470

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G V+KA EL+ Q+ D  I  +  TY ++I GFC     N A  LL +M    +QP V 
Sbjct: 471 KAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVF 530

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +N ++  LCK G +D+A RL E M      P+  +F+ ++DG    G +  A+ L V M
Sbjct: 531 DYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGM 590

Query: 385 ESMGCKHTVFSY 396
              G    +F+Y
Sbjct: 591 SRAGLSPDLFTY 602



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/278 (28%), Positives = 142/278 (51%), Gaps = 6/278 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S + L  C  + +       +   +   G   ++Y +NIL+   C+         +L  
Sbjct: 108 VSLSGLLECYVQMRKTGFAFGVLALMLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLRE 167

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + R+   PD  ++ ++I+G C    + +A  L  ++K  GC  +++T+  LI+  C+ G 
Sbjct: 168 MRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGK 227

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A+   +EM     KF +  + + V YT++I G C  G +D+ K LF ++ ++  +P 
Sbjct: 228 MDEAMGFLKEM-----KF-MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPC 281

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            +TYN+LI GFC      EA+ +   M+++GV+P+V T+  ++D LC  GK  EA + L 
Sbjct: 282 AITYNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQPLN 341

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           LMI +   PN  T++ +++  C  G V  A E+   M+
Sbjct: 342 LMIEKDEEPNAVTYNIIINKLCKDGLVADAVEIVELMK 379



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 152/324 (46%), Gaps = 34/324 (10%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA    + M+     P  +T +N++   L K       + + + +      PD  TYNIL
Sbjct: 335 EALQPLNLMIEKDEEPNAVT-YNIIINKLCKDGLVADAVEIVELMKKRRTRPDNITYNIL 393

Query: 149 INCFCKMGRVSHGFVVLGRILR-SCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +   C  G +     +L  +L+ S +T PD +++ +LI GLC E+R+ +A  ++  L   
Sbjct: 394 LGGLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKENRLHQALDIYDLLVEK 453

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG----------------------NGK 244
               + +T + L+N   + G    A+ L++++++                       N  
Sbjct: 454 LGAGDRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVA 513

Query: 245 FGVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
            G++CK       P+   Y  ++  LCKEG +D+A  LF +M+  N  PDVV++N +I G
Sbjct: 514 KGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDNNFPDVVSFNIMIDG 573

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
              A D   A  LL+ M   G+ PD+ T++ +++   K G +DEA    + M+  G  P+
Sbjct: 574 SLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPD 633

Query: 358 TSTFSTLMDGFCLT-GRVNHAKEL 380
                +++  +C++ G  +   EL
Sbjct: 634 AHICDSVLK-YCISQGETDKLTEL 656



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 124/267 (46%), Gaps = 6/267 (2%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P + S+N L   L K       L ++  L       D  T NIL+N   K G V+   
Sbjct: 420 TDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKAM 479

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +  +I  S    ++  +T++I G C    +  A  L  K++    +P+V  Y+ L++ L
Sbjct: 480 ELWKQISDSKIVRNSDTYTAMIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSL 539

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A  LFEEM   N        P+ V++  +IDG  K G +  A+ L + M   
Sbjct: 540 CKEGSLDQAWRLFEEMQRDNNF------PDVVSFNIMIDGSLKAGDIKSAESLLVGMSRA 593

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
            ++PD+ TY+ LI+ F      +EA     +M+D G +PD    + ++      G+ D+ 
Sbjct: 594 GLSPDLFTYSKLINRFLKLGYLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKL 653

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFC 369
           + L++ ++ + +  +     T+MD  C
Sbjct: 654 TELVKKLVDKDIVLDKELTCTVMDYMC 680



 Score = 84.7 bits (208), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 60/262 (22%), Positives = 126/262 (48%), Gaps = 8/262 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  I+D ++    +   +T+ N+L     K    +  + L+K+++ + +  +  TY  
Sbjct: 441 HQALDIYDLLVEKLGAGDRVTT-NILLNSTLKAGDVNKAMELWKQISDSKIVRNSDTYTA 499

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +I+ FCK G ++    +L ++  S   P    +  L+  LC E  + +A  LF +++   
Sbjct: 500 MIDGFCKTGMLNVAKGLLCKMRVSELQPSVFDYNCLLSSLCKEGSLDQAWRLFEEMQRDN 559

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V++++ +I+G  + G    A +L   M+           P+  TY+ +I+   K G
Sbjct: 560 NFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAG------LSPDLFTYSKLINRFLKLG 613

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           ++D+A   F +M D    PD    +S++       + ++   L+ +++D+ +  D     
Sbjct: 614 YLDEAISFFDKMVDSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDKDIVLDKELTC 673

Query: 328 VIMDELCK-NGKMDEASRLLEL 348
            +MD +C  +  MD A RLL +
Sbjct: 674 TVMDYMCNSSANMDLAKRLLRV 695



 Score = 42.7 bits (99), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 22/83 (26%), Positives = 44/83 (53%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M+ +G   +V   N+++  LC+N +  +A  LL  M    + P+  +++T++ GFC    
Sbjct: 133 MLKRGFAFNVYNHNILLKGLCRNLECGKAVSLLREMRRNSLMPDVFSYNTVIRGFCEGKE 192

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           +  A EL   M+  GC  ++ ++
Sbjct: 193 LEKALELANEMKGSGCSWSLVTW 215


>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
 gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
          Length = 1070

 Score =  160 bits (406), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 7/302 (2%)

Query: 96  YMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           +ML++R    P + SFN++   L K K  D  L+L K + S G    +  +N LI+  C 
Sbjct: 428 HMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCN 487

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           M R+  G+ +  ++     TP    + SL  G+C       A  L  +++  G  P +  
Sbjct: 488 MDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKN 547

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
            + ++  LC +G    A+   + M     + G +  P+ VTY+  ++G+C  G VD A  
Sbjct: 548 CTEMVQQLCFSGRVTEAVQFLDGML----QIGFL--PDIVTYSAAMNGMCNTGEVDDALH 601

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF  +  K   PDVV +N LI+GF  ++  +EA  ++ EM+++G+ P VVT+N+++D  C
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G++++A   L+ M+     P   T+++L+DGFC  GR + A +L+  M   GC     
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 395 SY 396
           +Y
Sbjct: 722 AY 723



 Score =  105 bits (263), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 137/363 (37%), Gaps = 87/363 (23%)

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L    +K    D  + L   + + G+     T ++L++ F K GRV     +  +++   
Sbjct: 251 LMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVSYG 310

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV-- 230
           F  D   ++ LI+GLC +  I  A  LF ++K+ G  P+V     +I   CR G   V  
Sbjct: 311 FVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIG 370

Query: 231 ----------------------------------ALNLFEEMANG-----NGKFGVV--- 248
                                             A  L   M  G     N   G     
Sbjct: 371 PFINENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHML 430

Query: 249 -----CKPNTVTYTTIIDGLCKEGFVDKAKEL---------------------------- 275
                 KPN+ ++  ++ GLCK   +D A  L                            
Sbjct: 431 HIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDR 490

Query: 276 -------FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
                  F QMKD  + P   TYNSL +G C   D   A  LL EM   G  P +     
Sbjct: 491 LEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTE 550

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++ +LC +G++ EA + L+ M+  G  P+  T+S  M+G C TG V+ A  LF     + 
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLF---RDIS 607

Query: 389 CKH 391
           CK+
Sbjct: 608 CKY 610



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 6/221 (2%)

Query: 137 GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
           G  PD+ TY+  +N  C  G V     +   I    + PD VA   LI G    S++ EA
Sbjct: 575 GFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILINGFRKSSKLDEA 634

Query: 197 AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
             +  ++   G  P+V+TY+ +I+  C+TG    A++  ++M     +      P  +TY
Sbjct: 635 QKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISYLDKMVYEEKQ------PTVITY 688

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           T++IDG C  G  D+A +L+ +M++K   P+ + Y + I+G         A     EM+ 
Sbjct: 689 TSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRKCGRIETALTYFEEMVT 748

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
           +G + D  +    ++ L  NG   +   LL+ ++ +    N
Sbjct: 749 KGFELDTFSLLYFINFLISNGYPMKGCELLKEVLQKDTYGN 789



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 143/345 (41%), Gaps = 63/345 (18%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           +   L  CL      DT +  F    ++ G  P+ YTYN L++   K GR       L  
Sbjct: 140 ALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLRE 199

Query: 168 ILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTK----------------------- 202
           ++  C   + D    TSL++  C   R  +A  +F +                       
Sbjct: 200 MVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWG 259

Query: 203 -----------LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
                      ++A G + +  T S L++G  + G    A+++F +M +    +G V   
Sbjct: 260 KVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS----YGFVV-- 313

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +   Y+ +I+GLC++  + +A +LF +MK   + PDV     +I  FC   D+      +
Sbjct: 314 DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFI 373

Query: 312 IEMMDQGVQPDVVT-FNVIMDELCKNGKMDEASRLLELMILRG----------------- 353
            E  +      VV  +NV+++EL   G+++ A +LL  M+  G                 
Sbjct: 374 NENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIR 433

Query: 354 --VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               PN+ +F+ ++ G C   +++ A  L   M S+GCK  +  +
Sbjct: 434 EDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMF 478



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N+L     K+   D    + + +   GLFP + TYN++I+  CK GR+      
Sbjct: 613 PDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISY 672

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     P  + +TSLI G C+  R  EA  L+ +++  GC PN I Y+  INGL +
Sbjct: 673 LDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRK 732

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G    AL  FEEM     +       +T +    I+ L   G+  K  EL  ++  K+
Sbjct: 733 CGRIETALTYFEEMVTKGFEL------DTFSLLYFINFLISNGYPMKGCELLKEVLQKD 785



 Score = 71.6 bits (174), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 10/221 (4%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHT 228
           R   TP A+ F  L++ L A      A   F   +A FGC PN  TY+ L++ L + G  
Sbjct: 133 RCLMTPGALGF--LLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRA 190

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPD 287
             A     EM    G   V    +  T T+++   C  G  D A ++F +M +   ++  
Sbjct: 191 DDAQARLREMVARCGDGSV----DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEH 246

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+T  +L+  F      + A  LL  M   G++    T +V++    K G++D+A  +  
Sbjct: 247 VLT--TLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFA 304

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M+  G   + + +S L++G C    +  A +LF  M+S G
Sbjct: 305 KMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSG 345


>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 616

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 90/302 (29%), Positives = 148/302 (49%), Gaps = 16/302 (5%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSL----------FKRLNSTGLFPDLYTYNILINCFCK 154
           P + S+N +   L   K +D V  L            ++   G  PDL  Y  +I+  CK
Sbjct: 211 PDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICK 270

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
            G       +L R+      P+ V + +++KGLC+  R  EA  L  ++    C  + +T
Sbjct: 271 DGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVT 330

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           ++ L++  C+ G     + L E+M          C P+ +TYTT+I+G CKEG VD+A  
Sbjct: 331 FNILVDFFCQNGLVDRVIELLEQMLEHG------CIPDVITYTTVINGFCKEGLVDEAVM 384

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           L   M      P+ ++Y  ++ G C A  W +A  L+  M+ QG  P+ VTFN +++ +C
Sbjct: 385 LLKNMSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMC 444

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G  ++A  LL+ M++ G +P+  ++ST++DG    G+   A EL   M + G      
Sbjct: 445 KKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTI 504

Query: 395 SY 396
            Y
Sbjct: 505 IY 506



 Score =  154 bits (389), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 91/296 (30%), Positives = 140/296 (47%), Gaps = 39/296 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRI-LRSCF-TPD-----------AVAFTSLIKG 186
           P+ YTY  ++   C  G ++    VL  + LR C  TP               F S ++ 
Sbjct: 106 PNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRSAVRA 165

Query: 187 L----------------------CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L                      C +  + E   L  KL +FGC+P++++Y+ ++ GLC 
Sbjct: 166 LQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCM 225

Query: 225 TGHTIVALNLFEEMANGNGKFGVV----CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
                    L  EM   +     +    C P+   Y TIIDG+CK+G  + A ++  +M 
Sbjct: 226 AKRWDDVEELMVEMVRVHEALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMP 285

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
              + P+VV YN+++ G C A  W EA  LL EM  +    D VTFN+++D  C+NG +D
Sbjct: 286 SYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVD 345

Query: 341 EASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               LLE M+  G  P+  T++T+++GFC  G V+ A  L  +M + GCK    SY
Sbjct: 346 RVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISY 401



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 84/275 (30%), Positives = 141/275 (51%), Gaps = 8/275 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN+L     +    D V+ L +++   G  PD+ TY  +IN FCK G V    ++L  
Sbjct: 329 VTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKN 388

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +      P+ +++T ++KGLC   R ++A  L + +   GC PN +T++TLIN +C+ G 
Sbjct: 389 MSACGCKPNTISYTIVLKGLCRAERWVDAQELISHMIQQGCLPNPVTFNTLINFMCKKGL 448

Query: 228 TIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
              A+ L ++M  NG       C P+ ++Y+T+IDGL K G  ++A EL   M +K I P
Sbjct: 449 AEQAIELLKQMLVNG-------CSPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITP 501

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + + Y+S+          ++   +   + D  V+ D   +N ++  LCK  + D A    
Sbjct: 502 NTIIYSSMASALSREGRTDKIIQMFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFF 561

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             M+  G  PN ST++ L+ G    G V  A++L 
Sbjct: 562 AYMVSNGCMPNESTYTILIRGLASEGLVREAQDLL 596



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 146/282 (51%), Gaps = 8/282 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +  +   + K  H++    +  R+ S GL P++  YN ++   C   R      +
Sbjct: 256 PDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDL 315

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +     D V F  L+   C    +     L  ++   GC P+VITY+T+ING C+
Sbjct: 316 LAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCIPDVITYTTVINGFCK 375

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKELFLQMKDKN 283
            G    A+ L + M+         CKPNT++YT ++ GLC+ E +VD A+EL   M  + 
Sbjct: 376 EGLVDEAVMLLKNMS------ACGCKPNTISYTIVLKGLCRAERWVD-AQELISHMIQQG 428

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ VT+N+LI+  C      +A  LL +M+  G  PD+++++ ++D L K GK +EA 
Sbjct: 429 CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDGLGKAGKTEEAL 488

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            LL +MI +G+ PNT  +S++       GR +   ++F S++
Sbjct: 489 ELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQ 530



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N +   L   + ++    L   +       D  T+NIL++ FC+ G V     +
Sbjct: 291 PNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIEL 350

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L     PD + +T++I G C E  + EA  L   + A GCKPN I+Y+ ++ GLCR
Sbjct: 351 LEQMLEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCR 410

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  L   M          C PN VT+ T+I+ +CK+G  ++A EL  QM     
Sbjct: 411 AERWVDAQELISHMIQQG------CLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGC 464

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD+++Y+++I G   A    EA  LL  M+++G+ P+ + ++ +   L + G+ D+  +
Sbjct: 465 SPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNTIIYSSMASALSREGRTDKIIQ 524

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + + +    V  + + ++ ++   C     + A + F  M S GC     +Y
Sbjct: 525 MFDSIQDATVRSDAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTY 576



 Score =  145 bits (366), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 157/312 (50%), Gaps = 19/312 (6%)

Query: 89  EAFCIFDYM-LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +A  + D M L    + PP+    L   C  +   + + +   + L++ G   D    N+
Sbjct: 126 DALTVLDEMPLRGCAATPPMCHVILEAAC--RGGGFRSAVRALQVLHAKGCTLDSGNCNL 183

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL-------- 199
           +++  C+ G V  G  +L ++      PD V++ +++KGLC   R  +   L        
Sbjct: 184 VVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVLKGLCMAKRWDDVEELMVEMVRVH 243

Query: 200 --FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
              +++   GC P++  Y+T+I+G+C+ GH  VA ++   M +    +G+  KPN V Y 
Sbjct: 244 EALSQMPEHGCTPDLRMYATIIDGICKDGHHEVANDILSRMPS----YGL--KPNVVCYN 297

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++ GLC     ++A++L  +M  ++   D VT+N L+  FC     +    LL +M++ 
Sbjct: 298 TVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLEH 357

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  PDV+T+  +++  CK G +DEA  LL+ M   G  PNT +++ ++ G C   R   A
Sbjct: 358 GCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPNTISYTIVLKGLCRAERWVDA 417

Query: 378 KELFVSMESMGC 389
           +EL   M   GC
Sbjct: 418 QELISHMIQQGC 429



 Score = 41.2 bits (95), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 6/133 (4%)

Query: 257 TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
           + +I  LC  G    A        D      VV YN++I G+C A    +          
Sbjct: 48  SALIRSLCAAGRTADAARALDTAGDA---AGVVAYNAMIAGYCRAG---QVAAARRLAAA 101

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
             V P+  T+  I+  LC  G + +A  +L+ M LRG          +++  C  G    
Sbjct: 102 VPVPPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPPMCHVILEAACRGGGFRS 161

Query: 377 AKELFVSMESMGC 389
           A      + + GC
Sbjct: 162 AVRALQVLHAKGC 174


>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 653

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 96/293 (32%), Positives = 144/293 (49%), Gaps = 8/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + SFNL+   + K    D  + LF+ +      PD YTY  L++  CK+ R+     +
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  + +  CF P    F  LI GLC +        L   +   GC PN +TY+TLI+GLC
Sbjct: 239 LDEMQIEGCF-PSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 297

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G    AL+L + M +        C PN VTY TII+GL K+G       + + M+++ 
Sbjct: 298 LKGKLDKALSLLDRMVSSK------CVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
              +   Y+ L+ G        EA  L  E MD+G + + V ++ ++D LC++ K DEA 
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAM 411

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++L  M  +G  PN  TFS+LM GF   G  + A E++  M  + C      Y
Sbjct: 412 KILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCY 464



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 170/344 (49%), Gaps = 15/344 (4%)

Query: 57  RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
           R+ +++R   E+      K+ G+  +    PN+A  +F  M       P + SFN +   
Sbjct: 97  RMRLENRVFSEKSFFVMFKAYGKAHL----PNKAIELFYRMSFEFYCKPTVKSFNSVLNV 152

Query: 117 LAKTKHYDTVLSLFKRL---NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI-LRSC 172
           + +   +D  L  +  +       + P++ ++N++I   CK+G V +   +   + +R C
Sbjct: 153 IIQAGFHDRALEFYNHVVGAKDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKC 212

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
             PDA  + +L+ GLC   RI EA +L  +++  GC P+  T++ LINGLC+ G      
Sbjct: 213 -VPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVT 271

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L + M      F   C PN VTY T+I GLC +G +DKA  L  +M      P+ VTY 
Sbjct: 272 KLVDNM------FLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYG 325

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           ++I+G        +   +L+ M ++G   +   ++V++  L K GK +EA RL +  + +
Sbjct: 326 TIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDK 385

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G   NT  +S L+DG C   + + A ++   M   GC    F++
Sbjct: 386 GCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKGCAPNAFTF 429



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 90/298 (30%), Positives = 152/298 (51%), Gaps = 9/298 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M      P P T FN+L   L K   +  V  L   +   G  P+  TYN 
Sbjct: 233 DEAVSLLDEMQIEGCFPSPAT-FNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNT 291

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  C  G++     +L R++ S   P+ V + ++I GL  + R ++ A +   ++  G
Sbjct: 292 LIHGLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
              N   YS L++GL + G +  A+ LF+E M  G       CK NTV Y+ ++DGLC++
Sbjct: 352 YIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKG-------CKLNTVLYSALVDGLCRD 404

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
              D+A ++  +M DK   P+  T++SL+ GF    + ++A  +  +M       + V +
Sbjct: 405 RKPDEAMKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCY 464

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +V++  LCK+GK+ EA  +   M+  G  P+   +S+++ G C  G V  A +L+  M
Sbjct: 465 SVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEM 522



 Score =  137 bits (345), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 93/313 (29%), Positives = 148/313 (47%), Gaps = 14/313 (4%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD T +T      + D M  ++   P   ++N L   L      D  LSL  R+ S+  
Sbjct: 264 KGDFTRVTK-----LVDNMF-LKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKC 317

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TY  +IN   K GR   G  VL  +    +  +   ++ L+ GL  E +  EA  
Sbjct: 318 VPNEVTYGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMR 377

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           LF +    GCK N + YS L++GLCR      A+ +  EM +        C PN  T+++
Sbjct: 378 LFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMTDKG------CAPNAFTFSS 431

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ G  + G   KA E++  M   N   + V Y+ LIHG C      EA  +  +M+  G
Sbjct: 432 LMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATG 491

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLL-ELMILR-GVNPNTSTFSTLMDGFCLTGRVNH 376
            +PDVV ++ ++  LC  G ++EA +L  E++ L     P+  T++ L +  C    ++ 
Sbjct: 492 CRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISR 551

Query: 377 AKELFVSMESMGC 389
           A +L  SM   GC
Sbjct: 552 AVDLLNSMLDRGC 564



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 72/244 (29%), Positives = 120/244 (49%), Gaps = 23/244 (9%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG--------------------CKPNV 212
           ++ D  +   ++  +  E+R+    + F   KA+G                    CKP V
Sbjct: 84  YSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKAHLPNKAIELFYRMSFEFYCKPTV 143

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            ++++++N + + G    AL  +  +  G     ++  PN +++  II  +CK G VD A
Sbjct: 144 KSFNSVLNVIIQAGFHDRALEFYNHVV-GAKDMNIL--PNVLSFNLIIKSMCKLGLVDNA 200

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
            ELF +M  +   PD  TY +L+ G C  +  +EA  LL EM  +G  P   TFNV+++ 
Sbjct: 201 IELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSLLDEMQIEGCFPSPATFNVLING 260

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LCK G     ++L++ M L+G  PN  T++TL+ G CL G+++ A  L   M S  C   
Sbjct: 261 LCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLDRMVSSKCVPN 320

Query: 393 VFSY 396
             +Y
Sbjct: 321 EVTY 324



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 75/289 (25%), Positives = 139/289 (48%), Gaps = 29/289 (10%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +++L   L K    +  + LFK     G   +   Y+ L++  C+  +      +L  + 
Sbjct: 359 YSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMT 418

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+A  F+SL+KG        +A  ++  +    C  N + YS LI+GLC+ G  +
Sbjct: 419 DKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVM 478

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK--DKNINPD 287
            A+ ++ +M          C+P+ V Y+++I GLC  G V++A +L+ +M   + +  PD
Sbjct: 479 EAMMVWAKM------LATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPDSQPD 532

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV-----------------IM 330
           V+TYN L +  C  +  + A  LL  M+D+G  PD+VT N+                  +
Sbjct: 533 VITYNILFNALCKQSSISRAVDLLNSMLDRGCDPDLVTCNIFLRMLREKLDPPQDGAKFL 592

Query: 331 DELC----KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           DEL     K  +   AS+++E+M+ + ++P  ST++ ++   C   ++ 
Sbjct: 593 DELVVRLLKRQRNLGASKIVEVMLQKFLSPKASTWARVVHELCQPKKIQ 641



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 132/297 (44%), Gaps = 17/297 (5%)

Query: 103 SPPPLTSFNL---LFGCLAKTKHYDTVL-SLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           SPP + SF +    F  L +   Y +   SL K LN   L   +++       F   G+ 
Sbjct: 61  SPPKMGSFKVGDSTFYSLIENYAYSSDFNSLEKVLNRMRLENRVFSEKSFFVMFKAYGKA 120

Query: 159 SHGFVVLGRILRSCFT----PDAVAFTSLIKGLCA---ESRIMEAAALFTKLKAFGCKPN 211
                 +    R  F     P   +F S++  +       R +E        K     PN
Sbjct: 121 HLPNKAIELFYRMSFEFYCKPTVKSFNSVLNVIIQAGFHDRALEFYNHVVGAKDMNILPN 180

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V++++ +I  +C+ G    A+ LF EM          C P+  TY T++DGLCK   +D+
Sbjct: 181 VLSFNLIIKSMCKLGLVDNAIELFREMPVRK------CVPDAYTYCTLMDGLCKVDRIDE 234

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A  L  +M+ +   P   T+N LI+G C   D+     L+  M  +G  P+ VT+N ++ 
Sbjct: 235 AVSLLDEMQIEGCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIH 294

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            LC  GK+D+A  LL+ M+     PN  T+ T+++G    GR      + V ME  G
Sbjct: 295 GLCLKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLVLMEERG 351



 Score = 42.4 bits (98), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 21/150 (14%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRP-SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           QG   A +  EA  +++ ML + P S P + ++N+LF  L K       + L   +   G
Sbjct: 504 QGLCDAGSVEEALKLYNEMLCLEPDSQPDVITYNILFNALCKQSSISRAVDLLNSMLDRG 563

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP--DAVAF-TSLIKGLCAESRIM 194
             PDL T NI +                 R+LR    P  D   F   L+  L    R +
Sbjct: 564 CDPDLVTCNIFL-----------------RMLREKLDPPQDGAKFLDELVVRLLKRQRNL 606

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            A+ +   +      P   T++ +++ LC+
Sbjct: 607 GASKIVEVMLQKFLSPKASTWARVVHELCQ 636


>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
          Length = 975

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 7/302 (2%)

Query: 96  YMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           +ML++R    P + SFN++   L K K  D  L+L K + S G    +  +N LI+  C 
Sbjct: 428 HMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCN 487

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           M R+  G+ +  ++     TP    + SL  G+C       A  L  +++  G  P +  
Sbjct: 488 MDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKN 547

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
            + ++  LC +G    A+   + M     + G +  P+ VTY+  ++G+C  G VD A  
Sbjct: 548 CTEMVQQLCFSGRVTEAVQFLDGML----QIGFL--PDIVTYSAAMNGMCNTGEVDDALH 601

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF  +  K   PDVV +N LI+GF  ++  +EA  ++ EM+++G+ P VVT+N+++D  C
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G++++A   L+ M+     P   T+++L+DGFC  GR + A +L+  M   GC     
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 395 SY 396
           +Y
Sbjct: 722 AY 723



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 150/393 (38%), Gaps = 91/393 (23%)

Query: 84  AITPNEAFCIFDYMLNM-RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           A  P++A  +F  M  +       LT+  + F   +K    D  + L   + + G+    
Sbjct: 224 AGRPDDANDVFQRMSELGWVDEHVLTTLMVAF---SKWGKVDGAVELLGSMEALGMRLSE 280

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T ++L++ F K GRV     +  +++   F  D   ++ LI+GLC +  I  A  LF +
Sbjct: 281 KTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKE 340

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIV-------------------------------- 230
           +K+ G  P+V     +I   CR G   V                                
Sbjct: 341 MKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAEYLKSGSVVPLYNVVLEELVHCG 400

Query: 231 ----ALNLFEEMANG-----NGKFGVV--------CKPNTVTYTTIIDGLCKEGFVDKAK 273
               A  L   M  G     N   G           KPN+ ++  ++ GLCK   +D A 
Sbjct: 401 EVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMAL 460

Query: 274 EL-----------------------------------FLQMKDKNINPDVVTYNSLIHGF 298
            L                                   F QMKD  + P   TYNSL +G 
Sbjct: 461 ALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGI 520

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C   D   A  LL EM   G  P +     ++ +LC +G++ EA + L+ M+  G  P+ 
Sbjct: 521 CRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDI 580

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            T+S  M+G C TG V+ A  LF     + CK+
Sbjct: 581 VTYSAAMNGMCNTGEVDDALHLF---RDISCKY 610



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/285 (24%), Positives = 120/285 (42%), Gaps = 42/285 (14%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---------- 137
            E + IF+ M ++  +P   T +N LF  + + K     L L + + + G          
Sbjct: 492 EEGYGIFNQMKDLGLTPSEFT-YNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTE 550

Query: 138 -------------------------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
                                      PD+ TY+  +N  C  G V     +   I    
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKY 610

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + PD VA   LI G    S++ EA  +  ++   G  P+V+TY+ +I+  C+TG    A+
Sbjct: 611 YLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAI 670

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +  ++M     +      P  +TYT++IDG C  G  D+A +L+ +M++K   P+ + Y 
Sbjct: 671 SYLDKMVYEEKQ------PTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYT 724

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           + I+G         A     EM+ +G + D  +    ++ L  NG
Sbjct: 725 AFINGLRKCGRIETALTYFEEMVTKGFELDTFSLLYFINFLISNG 769



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 143/345 (41%), Gaps = 63/345 (18%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           +   L  CL      DT +  F    ++ G  P+ YTYN L++   K GR       L  
Sbjct: 140 ALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLRE 199

Query: 168 ILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTK----------------------- 202
           ++  C   + D    TSL++  C   R  +A  +F +                       
Sbjct: 200 MVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWG 259

Query: 203 -----------LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
                      ++A G + +  T S L++G  + G    A+++F +M +    +G V   
Sbjct: 260 KVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS----YGFVV-- 313

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +   Y+ +I+GLC++  + +A +LF +MK   + PDV     +I  FC   D+      +
Sbjct: 314 DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFI 373

Query: 312 IEMMDQGVQPDVVT-FNVIMDELCKNGKMDEASRLLELMILRG----------------- 353
            E  +      VV  +NV+++EL   G+++ A +LL  M+  G                 
Sbjct: 374 NENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIR 433

Query: 354 --VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               PN+ +F+ ++ G C   +++ A  L   M S+GCK  +  +
Sbjct: 434 EDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMF 478



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 54/179 (30%), Positives = 86/179 (48%), Gaps = 6/179 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N+L     K+   D    + + +   GLFP + TYN++I+  CK GR+      
Sbjct: 613 PDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAISY 672

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++     P  + +TSLI G C+  R  EA  L+ +++  GC PN I Y+  INGL +
Sbjct: 673 LDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYTAFINGLRK 732

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
            G    AL  FEEM     +       +T +    I+ L   G+  K  EL  ++  K+
Sbjct: 733 CGRIETALTYFEEMVTKGFEL------DTFSLLYFINFLISNGYPMKGCELLKEVLQKD 785



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 10/221 (4%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHT 228
           R   TP A+ F  L++ L A      A   F   +A FGC PN  TY+ L++ L + G  
Sbjct: 133 RCLMTPGALGF--LLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRA 190

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPD 287
             A     EM    G   V    +  T T+++   C  G  D A ++F +M +   ++  
Sbjct: 191 DDAQARLREMVARCGDGSV----DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEH 246

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+T  +L+  F      + A  LL  M   G++    T +V++    K G++D+A  +  
Sbjct: 247 VLT--TLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFA 304

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M+  G   + + +S L++G C    +  A +LF  M+S G
Sbjct: 305 KMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSG 345


>gi|56201849|dbj|BAD73299.1| fertility restorer B-like [Oryza sativa Japonica Group]
 gi|56202086|dbj|BAD73615.1| fertility restorer B-like [Oryza sativa Japonica Group]
          Length = 647

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 102/300 (34%), Positives = 148/300 (49%), Gaps = 17/300 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    S+  +   L    H     SL   + + G  P   TYN+L+   C    V     
Sbjct: 234 PHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDA 293

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V  R+ R+   PDA ++ ++I GLC   R+ EA  LF ++ A G  P V+TY+TLI+ L 
Sbjct: 294 V--RVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLA 351

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R      AL LF+EMA    + G++  PN VTY+++IDGLCK G    A EL  +M  + 
Sbjct: 352 REACFDDALKLFDEMA----RRGIM--PNVVTYSSLIDGLCKGGRAASAVELLDRMVKER 405

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ +TY+S+I G C      +A  +L  M  QG +PD   F  ++  LC  G+  EAS
Sbjct: 406 KLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEAS 465

Query: 344 RLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNHAKELFVSMESMG--CKHTVF 394
             L+ M   G+ PN  T+S        ++   C  G V  A +++ SM + G   K T F
Sbjct: 466 NYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRGISTKPTTF 525



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 142/303 (46%), Gaps = 22/303 (7%)

Query: 102 PSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMG 156
           PSP    PP  S   L    ++       L LF+   S  GL     +Y  ++       
Sbjct: 195 PSPGELEPPFLS---LLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHS 251

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR--IMEAAALFTKLKAFGCKPNVIT 214
            +S    +L  +  + F P    +  L+K  C+++   I +A  +F  +     KP+  +
Sbjct: 252 HLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACS 307

Query: 215 YSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           Y+T+I+GLCR G    A +LF EM ANG         P  VTYTT+I  L +E   D A 
Sbjct: 308 YNTVIDGLCRRGRLPEARDLFAEMIANGTA-------PTVVTYTTLIHWLAREACFDDAL 360

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +LF +M  + I P+VVTY+SLI G C       A  LL  M+ +   P+ +T++ ++D L
Sbjct: 361 KLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGL 420

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK G + +A  +L+ M L+G  P+   F  L+ G C  GR   A      M   G +   
Sbjct: 421 CKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNR 480

Query: 394 FSY 396
            ++
Sbjct: 481 LTW 483


>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
          Length = 845

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 95/315 (30%), Positives = 156/315 (49%), Gaps = 15/315 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVL-----SLFKRLNSTGLFPD 141
           NEA CIFD M+   P P  ++ S N  + C      Y TV+     ++F  + + G+ P+
Sbjct: 367 NEAKCIFDSMVLKGPKPDIISYSTNASWVCY----WYVTVVWVMWHNIFNLMLTKGIAPN 422

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
            + +NILIN + + G +    ++   +      PD V F ++I  LC   R+ +A   F 
Sbjct: 423 KHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFN 482

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            +   G  P+   Y  LI G C  G  + A  L  EM N +     +  P    +++II+
Sbjct: 483 HMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKD-----IPPPGVKYFSSIIN 537

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
            LCKEG V + K++   M      P+VVT+NSL+ G+C   +  EA  LL  M   G++P
Sbjct: 538 NLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEP 597

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           +   +  ++D  CKNG++D+A  +   M+ +GV P +  +S ++ G     R   AK++F
Sbjct: 598 NCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMF 657

Query: 382 VSMESMGCKHTVFSY 396
             M   G   ++ +Y
Sbjct: 658 HEMIESGTTVSIHTY 672



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/340 (27%), Positives = 155/340 (45%), Gaps = 43/340 (12%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           IF+ ML  +   P    FN+L    A+    D  + +F+ + + G+ PD  T+  +I+  
Sbjct: 410 IFNLMLT-KGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 468

Query: 153 CKMGRVS---HGF------------VVLGRILRSCFT---------------------PD 176
           C++GR+    H F             V G +++ C                       P 
Sbjct: 469 CRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPG 528

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
              F+S+I  LC E R+ E   +   +   G +PNV+T+++L+ G C  G+   A  L +
Sbjct: 529 VKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLD 588

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            MA+      +  +PN   Y T++DG CK G +D A  +F  M  K + P  V Y+ ++H
Sbjct: 589 AMAS------IGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYSIILH 642

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G   A     A  +  EM++ G    + T+ V++  LC+N   DEA+ LLE +    V  
Sbjct: 643 GLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKF 702

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  TF+ ++      GR   AKELF ++ + G    + +Y
Sbjct: 703 DIITFNIVISAMFKVGRRQEAKELFDAISTYGLVPNIQTY 742



 Score =  142 bits (357), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 18/278 (6%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDT-------VLSLFKRLNSTGLF----PDLYTYNILINC 151
           +P P  + N +   LA+              + LFKR++         P ++TYNILI+C
Sbjct: 126 APVPARALNGILAALARAPPSAACGDAPALAIELFKRMDRWACPRHSPPTIHTYNILIDC 185

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + ++ R   G  ++GR+L++   PD  ++ SLI G   +  + +A  LF ++   G  P 
Sbjct: 186 YRRVHRPDLGLAIVGRLLKNGLGPDDFSY-SLIYGFVKDGEVDKAHCLFLEMMEQGVLPK 244

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           ++  +++I  LC+      A ++ ++M +          P+  TY+ IIDGLCK   +DK
Sbjct: 245 ILICNSIIKELCKMKEMDKAESIVQKMVDSG------IAPDLFTYSLIIDGLCKSKAMDK 298

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A+ +  QM +    P+ +TYNSLIHG+  +  WNE+  +  +M   GV P V   N  + 
Sbjct: 299 AERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIH 358

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            L K+G+ +EA  + + M+L+G  P+  ++ST     C
Sbjct: 359 ALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVC 396



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 169/383 (44%), Gaps = 81/383 (21%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A C+F  M+     P  L   N +   L K K  D   S+ +++  +G+ PDL+TY++
Sbjct: 227 DKAHCLFLEMMEQGVLPKILIC-NSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSL 285

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG--------------------- 186
           +I+  CK   +     VL +++ +   P+++ + SLI G                     
Sbjct: 286 IIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSISGMWNESVRVFKQMSSCG 345

Query: 187 --------------LCAESRIMEAAALFTKLKAFGCKPNVITYST--------------- 217
                         L    R  EA  +F  +   G KP++I+YST               
Sbjct: 346 VIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVLKGPKPDIISYSTNASWVCYWYVTVVWV 405

Query: 218 -----------------------LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTV 254
                                  LIN   R G    A+ +FE+M N     G++  P+TV
Sbjct: 406 MWHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNK----GMI--PDTV 459

Query: 255 TYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           T+ T+I  LC+ G +D A   F  M D  + P    Y  LI G C   +  +A  L+ EM
Sbjct: 460 TFATVISSLCRIGRLDDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEM 519

Query: 315 MDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M++ +  P V  F+ I++ LCK G++ E   ++++M+  G  PN  TF++LM+G+CL G 
Sbjct: 520 MNKDIPPPGVKYFSSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGN 579

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           +  A  L  +M S+G +   + Y
Sbjct: 580 MEEAFALLDAMASIGIEPNCYIY 602



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/301 (28%), Positives = 151/301 (50%), Gaps = 6/301 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A   F++M+++   P       L+ GC    +       + + +N     P +  ++ 
Sbjct: 475 DDALHKFNHMVDIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYFSS 534

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK GRV+ G  ++  ++++   P+ V F SL++G C    + EA AL   + + G
Sbjct: 535 IINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIG 594

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN   Y TL++G C+ G    AL +F +M +     GV  KP +V Y+ I+ GL +  
Sbjct: 595 IEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHK----GV--KPTSVLYSIILHGLFQAR 648

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
               AK++F +M +      + TY  ++ G C  N  +EAN LL ++    V+ D++TFN
Sbjct: 649 RTTAAKKMFHEMIESGTTVSIHTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDIITFN 708

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  + K G+  EA  L + +   G+ PN  T+S ++           A  LF+S+E  
Sbjct: 709 IVISAMFKVGRRQEAKELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKS 768

Query: 388 G 388
           G
Sbjct: 769 G 769



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 157/351 (44%), Gaps = 46/351 (13%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           S+  GD  A+   E F   D     R SPP + ++N+L  C  +    D  L++  RL  
Sbjct: 146 SAACGDAPALAI-ELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLK 204

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            GL PD ++Y+ LI  F K G V     +   ++     P  +   S+IK LC    + +
Sbjct: 205 NGLGPDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDK 263

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A ++  K+   G  P++ TYS +I+GLC++     A  + E+M           +PN++T
Sbjct: 264 AESIVQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAG------TRPNSIT 317

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y ++I G    G  +++  +F QM    + P V   NS IH        NEA C+   M+
Sbjct: 318 YNSLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMV 377

Query: 316 DQGVQPDVVT--------------------------------------FNVIMDELCKNG 337
            +G +PD+++                                      FN++++   + G
Sbjct: 378 LKGPKPDIISYSTNASWVCYWYVTVVWVMWHNIFNLMLTKGIAPNKHVFNILINAYARCG 437

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            MD+A  + E M  +G+ P+T TF+T++   C  GR++ A   F  M  +G
Sbjct: 438 MMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGRLDDALHKFNHMVDIG 488



 Score =  114 bits (286), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 66/203 (32%), Positives = 114/203 (56%), Gaps = 13/203 (6%)

Query: 196 AAALFTKLKAFGCK----PNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCK 250
           A  LF ++  + C     P + TY+ LI+   R     + L +   +  NG G       
Sbjct: 156 AIELFKRMDRWACPRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLG------- 208

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
           P+  +Y+ +I G  K+G VDKA  LFL+M ++ + P ++  NS+I   C   + ++A  +
Sbjct: 209 PDDFSYS-LIYGFVKDGEVDKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESI 267

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCL 370
           + +M+D G+ PD+ T+++I+D LCK+  MD+A R+LE M+  G  PN+ T+++L+ G+ +
Sbjct: 268 VQKMVDSGIAPDLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYNSLIHGYSI 327

Query: 371 TGRVNHAKELFVSMESMGCKHTV 393
           +G  N +  +F  M S G   TV
Sbjct: 328 SGMWNESVRVFKQMSSCGVIPTV 350



 Score =  101 bits (251), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 123/281 (43%), Gaps = 7/281 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           I D M+     P  +T FN L        + +   +L   + S G+ P+ Y Y  L++ +
Sbjct: 551 IMDMMVQTGQRPNVVT-FNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 609

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK GR+     V   +L     P +V ++ ++ GL    R   A  +F ++   G   ++
Sbjct: 610 CKNGRIDDALTVFRDMLHKGVKPTSVLYSIILHGLFQARRTTAAKKMFHEMIESGTTVSI 669

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  ++ GLCR   T  A  L E++   N KF ++      T+  +I  + K G   +A
Sbjct: 670 HTYGVVLGGLCRNNCTDEANMLLEKLFAMNVKFDII------TFNIVISAMFKVGRRQEA 723

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
           KELF  +    + P++ TY+ +I        + EA+ L I +   G   D    N I+  
Sbjct: 724 KELFDAISTYGLVPNIQTYSMMITNLIKEESYEEADNLFISVEKSGHASDSRLLNHIVRM 783

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           L    ++ +AS  L ++    +    ST S L   F   G+
Sbjct: 784 LLNKAEVAKASNYLSIIGENNLTLEASTISLLASLFSREGK 824


>gi|449445409|ref|XP_004140465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
 gi|449518107|ref|XP_004166085.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g38730-like [Cucumis sativus]
          Length = 578

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/303 (32%), Positives = 160/303 (52%), Gaps = 11/303 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P +A  + +YM  +    P L +  +L   LAK +  DTV   +K++   G+ P+++ YN
Sbjct: 136 PQDAIQVLEYM-RLHGFKPNLHACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYN 194

Query: 147 ILINCFCKMGRVSHGFVVLGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +LI+  CK G V     ++  + L+S F PD   + +LI     +S   EA  +  +++ 
Sbjct: 195 VLIHACCKSGDVEKAEQLVCEMELKSVF-PDLYTYNTLISLYSRKSLHYEALCVQDRMER 253

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+++TY++LI G C+ G    A+ LF E+ +          PN VTYTT+IDG C+
Sbjct: 254 AGVSPDIVTYNSLIYGFCKEGKMREAVKLFREIKD--------VSPNHVTYTTLIDGYCR 305

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
               ++A  L   M+ K ++  V TYNS++   C      +AN LL EM ++ V+PD VT
Sbjct: 306 VNDFEEALRLCKVMEAKGLHLGVATYNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVT 365

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            N +++  CK G M  A ++   M+  G+  ++ T+  L+ GFC    +  AKEL   M 
Sbjct: 366 CNTLINAYCKIGDMKSALKVKSKMLDAGLQLDSFTYKALIHGFCWVRDMESAKELLFCML 425

Query: 386 SMG 388
            +G
Sbjct: 426 DVG 428



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 167/385 (43%), Gaps = 54/385 (14%)

Query: 36  SSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFD 95
           +S++K+  +D T     K+ +R+ V     +   L   C  SG  +       +  C   
Sbjct: 163 NSLAKDRLTD-TVWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDVE----KAEQLVC--- 214

Query: 96  YMLNMRPSPPPLTSFNLLFGCLA-KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
             + ++   P L ++N L    + K+ HY+  L +  R+   G+ PD+ TYN LI  FCK
Sbjct: 215 -EMELKSVFPDLYTYNTLISLYSRKSLHYEA-LCVQDRMERAGVSPDIVTYNSLIYGFCK 272

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG---------------------------- 186
            G++    V L R ++   +P+ V +T+LI G                            
Sbjct: 273 EGKMREA-VKLFREIKD-VSPNHVTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVAT 330

Query: 187 -------LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
                  LC E RI +A  L  ++     +P+ +T +TLIN  C+ G    AL +  +M 
Sbjct: 331 YNSVLRKLCEEGRIRDANKLLNEMGERKVEPDNVTCNTLINAYCKIGDMKSALKVKSKML 390

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           +   +       ++ TY  +I G C    ++ AKEL   M D  ++P   TY+ L+ G+C
Sbjct: 391 DAGLQL------DSFTYKALIHGFCWVRDMESAKELLFCMLDVGLSPGYCTYSWLVDGYC 444

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              +      LL E + +G   D+     ++  LC   ++  A ++   M LRGV+ ++ 
Sbjct: 445 ELGNEGAIISLLDEFLTKGYCVDLSVCRALIRRLCHQERVGFAEKIYSTMHLRGVSGDSV 504

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSM 384
            +++L   +   G+ N   E+   M
Sbjct: 505 IYTSLAYAYWKDGKSNLVSEMLSEM 529



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 52/182 (28%), Positives = 81/182 (44%), Gaps = 37/182 (20%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           KPN    T +++ L K+   D   + + +M    + P++  YN LIH  C + D  +A  
Sbjct: 152 KPNLHACTVLLNSLAKDRLTDTVWKSYKKMIRVGVVPNIHIYNVLIHACCKSGDVEKAEQ 211

Query: 310 LLIEM----------------------------------MDQ-GVQPDVVTFNVIMDELC 334
           L+ EM                                  M++ GV PD+VT+N ++   C
Sbjct: 212 LVCEMELKSVFPDLYTYNTLISLYSRKSLHYEALCVQDRMERAGVSPDIVTYNSLIYGFC 271

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K GKM EA +L     ++ V+PN  T++TL+DG+C       A  L   ME+ G    V 
Sbjct: 272 KEGKMREAVKLFRE--IKDVSPNHVTYTTLIDGYCRVNDFEEALRLCKVMEAKGLHLGVA 329

Query: 395 SY 396
           +Y
Sbjct: 330 TY 331


>gi|302767746|ref|XP_002967293.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
 gi|300165284|gb|EFJ31892.1| hypothetical protein SELMODRAFT_87828 [Selaginella moellendorffii]
          Length = 321

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 93/259 (35%), Positives = 135/259 (52%), Gaps = 12/259 (4%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFV---VLGRILRSCFTPDAVAFTSLIKGLCA 189
           +   G  P + T+ IL++  CK  R++  F    V+G   R CF P+A+ F  ++  LC 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGE--RGCF-PNALVFNGIMDALCK 57

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           E R  EA      +++ G  P ++TY+ LI+G C+      AL + +EM  G G      
Sbjct: 58  EGRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEM-TGRGH----- 111

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +PN VTY T + GLCK G VD A  LF  M +K I  DV  Y +LI G C A    EA  
Sbjct: 112 EPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYS 171

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           LL EM + G  P    +N I+  LCK  +++EA +L + M   G+ P+  TF  ++ G+C
Sbjct: 172 LLDEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYC 231

Query: 370 LTGRVNHAKELFVSMESMG 388
              R++ A  L   M+S G
Sbjct: 232 RGHRIDDALLLLQQMKSAG 250



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 84/276 (30%), Positives = 142/276 (51%), Gaps = 7/276 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF + + M   R   P    FN +   L K           + + S G+ P + TYN+L
Sbjct: 28  DAFELVEVM-GERGCFPNALVFNGIMDALCKEGRSAEAYGFIETMRSMGVSPTIVTYNLL 86

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK  ++     +L  +      P+ V + + + GLC   ++ +A ALF  +     
Sbjct: 87  IDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKI 146

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + +V  Y+TLI+GLC+ G    A +L +EM N        C P    Y  I+  LCK   
Sbjct: 147 RLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG------CVPKPGCYNAILSWLCKGSR 200

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A +LF +M    I PD +T+  ++ G+C  +  ++A  LL +M   G+ P  V +N 
Sbjct: 201 INEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNT 260

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           ++D L + G++ EA RLL+ MI RG++PN+ T++ +
Sbjct: 261 LIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F +L   L K         L + +   G FP+   +N +++  CK GR +  +  
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAYGF 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +     +P  V +  LI G C E ++  A  +  ++   G +PN +TY+T ++GLC+
Sbjct: 68  IETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL LF  M     +  V        YTT+IDGLC+ G + +A  L  +M++   
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVY------GYTTLIDGLCQAGKLAEAYSLLDEMENSGC 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P    YN+++   C  +  NEA+ L   M   G+ PD +TF +++   C+  ++D+A  
Sbjct: 182 VPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALL 241

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL+ M   G+ P    ++TL+D     GRV+ A  L   M S G
Sbjct: 242 LLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRG 285



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 67/183 (36%), Positives = 99/183 (54%), Gaps = 6/183 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P V+T+  L++GLC+      A  L E M    G+ G  C PN + +  I+D LCKE
Sbjct: 5   GCIPTVVTFGILVDGLCKANRLTDAFELVEVM----GERG--CFPNALVFNGIMDALCKE 58

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A      M+   ++P +VTYN LI GFC     + A  +L EM  +G +P+ VT+
Sbjct: 59  GRSAEAYGFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTY 118

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N  +  LCK GK+D+A  L   M  + +  +   ++TL+DG C  G++  A  L   ME+
Sbjct: 119 NTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMEN 178

Query: 387 MGC 389
            GC
Sbjct: 179 SGC 181



 Score = 95.1 bits (235), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P  VT+  ++DGLCK   +  A EL   M ++   P+ + +N ++   C      EA 
Sbjct: 6   CIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGRSAEAY 65

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +  M   GV P +VT+N+++D  CK  K+  A  +L+ M  RG  PN  T++T + G 
Sbjct: 66  GFIETMRSMGVSPTIVTYNLLIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGL 125

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G+V+ A  LF +M     +  V+ Y
Sbjct: 126 CKYGKVDDALALFRAMTEKKIRLDVYGY 153



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ + D M N    P P   +N +   L K    +    LFKR+  +G+ PD  T+ ++
Sbjct: 168 EAYSLLDEMENSGCVPKP-GCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMM 226

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +C+  R+    ++L ++  +   P  V + +LI  L    R+ EA  L  ++ + G 
Sbjct: 227 VFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGL 286

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEE 237
            PN  TY+ +        + +V L+  +E
Sbjct: 287 SPNSRTYALMRKQQTDDSNLVVELDYRKE 315



 Score = 65.5 bits (158), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M ++G  P VVTF +++D LCK  ++ +A  L+E+M  RG  PN   F+ +MD  C  GR
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMGERGCFPNALVFNGIMDALCKEGR 60

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A     +M SMG   T+ +Y
Sbjct: 61  SAEAYGFIETMRSMGVSPTIVTY 83


>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 610

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 104/283 (36%), Positives = 144/283 (50%), Gaps = 9/283 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P  A  +FD M   R     + S+N L   L   K +D +   F  +    + PD  T+N
Sbjct: 99  PQNALKMFDEMPLYR-CQRTIKSYNTLLNVLMICKEFDVMREHFVNIKRH-VKPDGCTFN 156

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KA 205
           I+I   C  GRV     VL  +      P+ V F +LI GLC   ++ EA  L   +   
Sbjct: 157 IMIRGLCSDGRVDDALKVLDEMKNRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNV 216

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  PN   Y+TLI GLC  G    AL L EEM       GV  K ++  Y+T+I GL K
Sbjct: 217 HGLCPNEYVYATLIKGLCAVGELSFALRLKEEMERD----GV--KVDSAIYSTLISGLFK 270

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G  D+   + ++M+ K    D VTYN +I+GFC   D+  A  +L EMM+   +PDV++
Sbjct: 271 VGRKDEVFGVLMEMELKGCKADTVTYNVMINGFCKDKDFETAYKILDEMMENRCKPDVIS 330

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +NVI+ ELCK+GK  EAS L E M  RG  P+  ++  + DG 
Sbjct: 331 YNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVSYRIVFDGL 373



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 119/253 (47%), Gaps = 6/253 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  + D M N    P  +T   L++G     K  +        +N  GL P+ Y Y  
Sbjct: 169 DDALKVLDEMKNRDLVPNQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYAT 228

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   C +G +S    +   + R     D+  +++LI GL    R  E   +  +++  G
Sbjct: 229 LIKGLCAVGELSFALRLKEEMERDGVKVDSAIYSTLISGLFKVGRKDEVFGVLMEMELKG 288

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           CK + +TY+ +ING C+      A  + +EM          CKP+ ++Y  I+  LCK+G
Sbjct: 289 CKADTVTYNVMINGFCKDKDFETAYKILDEMMENR------CKPDVISYNVILGELCKDG 342

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A +LF  M  +   PDVV+Y  +  G   A ++ +A  +L EM+ +G  P   +  
Sbjct: 343 KWSEASDLFEDMPRRGCAPDVVSYRIVFDGLSDAMEFKDAAFILDEMVFKGFAPRSSSIC 402

Query: 328 VIMDELCKNGKMD 340
             ++ LC+NG  D
Sbjct: 403 KFINRLCQNGDED 415


>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic [Vitis vinifera]
 gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
          Length = 1113

 Score =  160 bits (406), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 164/345 (47%), Gaps = 41/345 (11%)

Query: 87  PNEAFCIFD----------------YMLNMRPSPPPLTSFNLLFGCLAKT---KHYDTVL 127
           PN+AF  F+                Y+L M  +   +    ++F  + K    +  +T L
Sbjct: 102 PNQAFSFFNSVAEMPRVIHTTETCNYVLEMLRAHRRVEDMVVVFNLMQKQIIKRSINTYL 161

Query: 128 SLFK----------------RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           ++FK                ++   G   + Y+Y  LI+   K G       V  R++  
Sbjct: 162 TIFKVLYIRGGLREAPVALEKMRKVGFVLNGYSYIGLIHLLLKSGFCREALKVYRRMVSE 221

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
              P    +++L+  L     I     L  ++++ G +PN+ T++  I  L R G    A
Sbjct: 222 GIKPSLKTYSALMVALGKRRDIETVMGLLQEMESLGLRPNIYTFTICIRILGRAGKIDEA 281

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
             + + M +        C P+ VTYT +ID LC  G ++ AKELFL+MK  +  PD VTY
Sbjct: 282 YGILKRMDDAG------CGPDVVTYTVLIDALCNAGKLNNAKELFLKMKASSHKPDRVTY 335

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
            +L+  F    D +       EM   G  PDVVTF +++D LCK GK+DEA   L++M  
Sbjct: 336 ITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKK 395

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +GV PN  T++TL+ G     R++ A ELF SMES+G + T ++Y
Sbjct: 396 QGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTY 440



 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/321 (27%), Positives = 154/321 (47%), Gaps = 41/321 (12%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV------ 158
            P L ++N L   L K +  +    LF ++ + G  PD++TYN+ ++   K G++      
Sbjct: 786  PSLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDL 845

Query: 159  --------------SHGFVVLGRI---------------LRSCFTPDAVAFTSLIKGLCA 189
                          +H  V+ G +               +   F+P    +  LI GL  
Sbjct: 846  YEEMLFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLK 905

Query: 190  ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
              R+ EA   F ++  +GC PN   Y+ L+NG  + G    A  LF  M     K G+  
Sbjct: 906  LGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMV----KEGI-- 959

Query: 250  KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            +P+  +Y+ ++D LC  G VD A   F ++K   ++PD+V YN +I+G   +    EA  
Sbjct: 960  RPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALS 1019

Query: 310  LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            L  EM ++G+ PD+ T+N ++  L   G ++EA ++ E + L+G+ PN  T++ L+ G  
Sbjct: 1020 LFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRGHS 1079

Query: 370  LTGRVNHAKELFVSMESMGCK 390
            ++G  + A  ++  M   GC+
Sbjct: 1080 MSGNPDRAYAVYKKMMVGGCR 1100



 Score =  145 bits (365), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 95/300 (31%), Positives = 145/300 (48%), Gaps = 7/300 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EAF   D M   +   P L ++N L   L +    D  L LF  + S GL    YTY +
Sbjct: 384 DEAFGTLDVM-KKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTYIL 442

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+ + K G          ++  +   P+ VA  + +  L  + R+ EA   F  LK  G
Sbjct: 443 FIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKKCG 502

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ ITY+ L+    + G    A+ L  EM   NG     C P  V   ++ID L K  
Sbjct: 503 LAPDAITYNILMRCYGKAGRVDDAIKLLSEMEE-NG-----CDPEVVIINSLIDTLYKAD 556

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A ++F +MK+  + P VVTYN+L+ G        EA  L   M+     P+ ++FN
Sbjct: 557 RVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFN 616

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCKNG++D A ++L  M      P+  T++T++ G     RVN+A  LF  M+ +
Sbjct: 617 TLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLTYNTVIYGLIKENRVNYAFWLFHQMKKV 676



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/274 (31%), Positives = 138/274 (50%), Gaps = 8/274 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + + N     LA+    +     F  L   GL PD  TYNIL+ C+ K GRV     +
Sbjct: 470 PNIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKL 529

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   P+ V   SLI  L    R+ EA  +F ++K     P V+TY+TL+ GL +
Sbjct: 530 LSEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMKEMKLAPTVVTYNTLLAGLGK 589

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  LF+ M   +      C PNT+++ T++D LCK G VD A ++  +M + N 
Sbjct: 590 EGRVQEATALFKGMIADD------CPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNC 643

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV+TYN++I+G    N  N A   L   M + + PD VT   ++  + K+G++++A R
Sbjct: 644 FPDVLTYNTVIYGLIKENRVNYA-FWLFHQMKKVIYPDYVTLCTLLPGVIKDGRIEDAFR 702

Query: 345 LL-ELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           +  E +   G + + S +  LM G  +   +  +
Sbjct: 703 VAKEFVHHVGDHADGSFWEDLMGGILIEAEIGQS 736



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 77/250 (30%), Positives = 123/250 (49%), Gaps = 7/250 (2%)

Query: 148  LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            L+   CK G+    + V  ++ +S C TP   A+ SLI GL        A  LF K+K  
Sbjct: 758  LVKFLCKHGKAVDAYNVFLKLTKSFCITPSLEAYNSLIDGLLKARLTEMAWGLFYKMKNA 817

Query: 207  GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            GC P+V TY+  ++ L ++G      +L+EEM          CKPNT+T+  +I GL K 
Sbjct: 818  GCTPDVFTYNLFLDALGKSGKIKELFDLYEEMLFRG------CKPNTITHNIVIFGLVKS 871

Query: 267  GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
              +DKA +L+  +   + +P   TY  LI G        EA     EM+D G  P+   +
Sbjct: 872  NSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLY 931

Query: 327  NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            N++M+   K G ++ A  L   M+  G+ P+  ++S ++D  C+ G+V+ A   F  ++ 
Sbjct: 932  NILMNGFGKQGDVETACELFRRMVKEGIRPDLKSYSIMVDCLCMVGKVDDALHYFEELKL 991

Query: 387  MGCKHTVFSY 396
             G    +  Y
Sbjct: 992  SGLDPDLVCY 1001



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 92/332 (27%), Positives = 152/332 (45%), Gaps = 35/332 (10%)

Query: 98  LNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           L M+ S   P   ++  L    +     D +   +  + + G  PD+ T+ ILI+  CK+
Sbjct: 321 LKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEADGYLPDVVTFTILIDALCKV 380

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G+V   F  L  + +    P+   + +LI GL   +R+ EA  LF  +++ G +    TY
Sbjct: 381 GKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEALELFNSMESLGLETTAYTY 440

Query: 216 STLINGLCRTGHTIVALNLFEEMA-------------------------------NGNGK 244
              I+   ++G +  A+  FE+M                                NG  K
Sbjct: 441 ILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLYSLAEQGRLEEAKEFFNGLKK 500

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G+   P+ +TY  ++    K G VD A +L  +M++   +P+VV  NSLI     A+  
Sbjct: 501 CGLA--PDAITYNILMRCYGKAGRVDDAIKLLSEMEENGCDPEVVIINSLIDTLYKADRV 558

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  +   M +  + P VVT+N ++  L K G++ EA+ L + MI     PNT +F+TL
Sbjct: 559 DEAWKMFQRMKEMKLAPTVVTYNTLLAGLGKEGRVQEATALFKGMIADDCPPNTISFNTL 618

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +D  C  G V+ A ++   M  M C   V +Y
Sbjct: 619 LDCLCKNGEVDLALKMLFRMTEMNCFPDVLTY 650



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 136/276 (49%), Gaps = 7/276 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            E F +++ ML  R   P   + N++   L K+   D  + L+  L S    P  +TY  L
Sbjct: 841  ELFDLYEEML-FRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPL 899

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            I+   K+GR+         +L     P+   +  L+ G   +  +  A  LF ++   G 
Sbjct: 900  IDGLLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGI 959

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            +P++ +YS +++ LC  G    AL+ FEE+            P+ V Y  +I+GL +   
Sbjct: 960  RPDLKSYSIMVDCLCMVGKVDDALHYFEELKLSG------LDPDLVCYNLMINGLGRSQR 1013

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            V++A  LF +M+++ I PD+ TYN+LI     A    EA  +  E+  +G++P+V T+N 
Sbjct: 1014 VEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNA 1073

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
            ++     +G  D A  + + M++ G  PNT TF+ L
Sbjct: 1074 LIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQL 1109



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 56/116 (48%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P L  +NL+   L +++  +  LSLF  + + G+ PDLYTYN LI      G V     +
Sbjct: 996  PDLVCYNLMINGLGRSQRVEEALSLFDEMRNRGITPDLYTYNALILNLGIAGMVEEAGKM 1055

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               +      P+   + +LI+G         A A++ K+   GC+PN  T++ L N
Sbjct: 1056 YEELQLKGLEPNVFTYNALIRGHSMSGNPDRAYAVYKKMMVGGCRPNTGTFAQLPN 1111


>gi|302757477|ref|XP_002962162.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
 gi|300170821|gb|EFJ37422.1| hypothetical protein SELMODRAFT_76220 [Selaginella moellendorffii]
          Length = 484

 Score =  160 bits (406), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 94/288 (32%), Positives = 148/288 (51%), Gaps = 9/288 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N +   L K    D  + LF RL    + PD +TY+ L++  C+  R+     V
Sbjct: 146 PNVATYNTVINGLCKFGKIDWAVHLFTRLPHDLVDPDGFTYSTLVHGLCQAERLEAAIKV 205

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L + +  DA A+ ++  G C E R+ EA  +   +   GCKP+V+TY+ +ING+C+
Sbjct: 206 YDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQRGCKPSVVTYNCIINGVCQ 265

Query: 225 TGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             + I  A  LF++M   +      C PN VTY T+I GL K   V +  ELF  M    
Sbjct: 266 YKNRIEEAYRLFQQMVGSD------CPPNAVTYGTMILGLSKIYEVQRCLELFKGMSKAG 319

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK--MDE 341
           ++PD   Y+SLI+ F      +EA  +L +     V PDV  +  ++   C+  K  +DE
Sbjct: 320 LSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPDVYMYTTLISGYCRARKPRVDE 379

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           A  L + M  R V PN  T++ ++ G C TGR + A ++F  M  + C
Sbjct: 380 ALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQIFQEMFKVKC 427



 Score =  152 bits (383), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 92/320 (28%), Positives = 153/320 (47%), Gaps = 10/320 (3%)

Query: 80  GDITAITPNEAFC--IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG 137
           G +    P+ A     FD+          +  +  L   L + +     +  FKR     
Sbjct: 15  GSVIRRVPSLALARKFFDWSSKQEGYRHDVYCYTRLLHHLVRARRTREAVRFFKRELCAH 74

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
             P LY++ I+I CFC +      +  LG +      PD  A+  ++KG C   R+  A 
Sbjct: 75  CRPSLYSFTIIIQCFCNVRNPGRAWRYLGYMRSLGIPPDVTAYNVVLKGYCDLGRVGRAL 134

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
             F K+    CKPNV TY+T+INGLC+ G    A++LF  + +       +  P+  TY+
Sbjct: 135 IKFGKMGK-TCKPNVATYNTVINGLCKFGKIDWAVHLFTRLPHD------LVDPDGFTYS 187

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++ GLC+   ++ A +++  M + N + D   YN++  GFC     +EA  +L  M+ +
Sbjct: 188 TLVHGLCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEALEVLKTMIQR 247

Query: 318 GVQPDVVTFNVIMDELCK-NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           G +P VVT+N I++ +C+   +++EA RL + M+     PN  T+ T++ G      V  
Sbjct: 248 GCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILGLSKIYEVQR 307

Query: 377 AKELFVSMESMGCKHTVFSY 396
             ELF  M   G     ++Y
Sbjct: 308 CLELFKGMSKAGLSPDGYAY 327



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 126/283 (44%), Gaps = 33/283 (11%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
            P   T   L+ G L + +  +  + ++  +       D   YN + + FCK  RV    
Sbjct: 180 DPDGFTYSTLVHG-LCQAERLEAAIKVYDMMLEANYDGDAGAYNAMADGFCKERRVDEAL 238

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCA-ESRIMEAAALFTKLKAFGCKPNVITYSTLING 221
            VL  +++    P  V +  +I G+C  ++RI EA  LF ++    C PN +TY T+I G
Sbjct: 239 EVLKTMIQRGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYGTMILG 298

Query: 222 LCRTGHTIVALNLFEEMA------NGNGKFGVV-----------------------CKPN 252
           L +       L LF+ M+      +G     ++                         P+
Sbjct: 299 LSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARNHVGPD 358

Query: 253 TVTYTTIIDGLCK--EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
              YTT+I G C+  +  VD+A  LF  MKD+ + P+V+TYN ++ G C    ++EA  +
Sbjct: 359 VYMYTTLISGYCRARKPRVDEALLLFQNMKDRRVWPNVITYNIVLRGLCKTGRFDEAYQI 418

Query: 311 LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
             EM      P+ +TF V+   +   GK D+  R+   M+ +G
Sbjct: 419 FQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMVYKG 461



 Score = 81.6 bits (200), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 13/260 (5%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  +   M+  R   P + ++N +   + + K+  +    LF+++  +   P+  TY 
Sbjct: 235 DEALEVLKTMIQ-RGCKPSVVTYNCIINGVCQYKNRIEEAYRLFQQMVGSDCPPNAVTYG 293

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +I    K+  V     +   + ++  +PD  A+ SLI       ++ EA ++       
Sbjct: 294 TMILGLSKIYEVQRCLELFKGMSKAGLSPDGYAYHSLIYAFVKVRKLDEAKSILQDAARN 353

Query: 207 GCKPNVITYSTLINGLCRTGHTIV--ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
              P+V  Y+TLI+G CR     V  AL LF+ M +          PN +TY  ++ GLC
Sbjct: 354 HVGPDVYMYTTLISGYCRARKPRVDEALLLFQNMKDRR------VWPNVITYNIVLRGLC 407

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G  D+A ++F +M     +P+ +T+  +  G  +    ++   + ++M+ +G      
Sbjct: 408 KTGRFDEAYQIFQEMFKVKCSPNRMTFKVMTMGMIHCGKTDKFERIFMDMVYKGRWQGE- 466

Query: 325 TFNVIMDELCKNGKMDEASR 344
               I+++    G  DEA R
Sbjct: 467 --GPILEQHGLIGVTDEARR 484


>gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g13630-like [Vitis
           vinifera]
          Length = 829

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 97/327 (29%), Positives = 165/327 (50%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N+L   L      +  L     + + G+ PD+ TYNIL N F  +G +S  + V
Sbjct: 303 PDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRILGLISGAWKV 362

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + R+L +   PD V +T LI G C    I E+  L  K+ + G K +++TY+ L++ LC+
Sbjct: 363 VQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCK 422

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +G    A+ L  EM        +  KP+ +TY+ +I GLCK G V++A EL+ +M  K I
Sbjct: 423 SGRIDEAVILLHEMEV------IGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMCSKRI 476

Query: 285 NP-----------------------------------DVVTYNSLIHGFCYANDWNEANC 309
            P                                   +++ YN +I G+    +  EA  
Sbjct: 477 YPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIGEAVR 536

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
              +++++G+ P +VTFN ++   CK GK+ EA +LL+ + + G+ P + T++TLM+G+C
Sbjct: 537 SYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLMNGYC 596

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G ++   ++   ME+   K T  +Y
Sbjct: 597 EEGDMHSMFDMLHEMEAKAIKPTQITY 623



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 87/308 (28%), Positives = 151/308 (49%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +++ M + R  P       ++ G   K    +  +  F  +  + +  ++  YNI+
Sbjct: 463 EAIELYEEMCSKRIYPNSFVCSAIISGLFEKGAISEAQM-YFDSVTKSDVAEEIILYNIM 521

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ + K+G +        +I+    +P  V F SLI G C + ++ EA  L   +K  G 
Sbjct: 522 IDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGL 581

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P  +TY+TL+NG C  G      ++  EM           KP  +TYT ++ GLCKEG 
Sbjct: 582 VPTSVTYTTLMNGYCEEGDMHSMFDMLHEME------AKAIKPTQITYTVVVKGLCKEGR 635

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + ++ +L   M  + + PD +TYN++I  FC A+D  +A  L  +M+   +QP  VT+NV
Sbjct: 636 LHESVQLLKYMYARGLFPDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNV 695

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LC  G + +A RLL  +  + +      ++T++   C  G V +A   F  M   G
Sbjct: 696 LINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERG 755

Query: 389 CKHTVFSY 396
            + ++  Y
Sbjct: 756 FEVSIRDY 763



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/288 (31%), Positives = 150/288 (52%), Gaps = 12/288 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +LN++ S   + ++N L   L   +H D +  ++  + ++G+  + YT  ILI+  C+  
Sbjct: 196 VLNLQVS---IATYNSL---LYNLRHTDIMWDVYNEIKASGVPQNEYTNPILIDGLCRQS 249

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           R+      L       F P  V+F +L+ G C    +  A + F  +  +G  P+V +Y+
Sbjct: 250 RLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYN 309

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            L++GLC  G    AL    +M N     GV  +P+ VTY  + +G    G +  A ++ 
Sbjct: 310 ILLHGLCVAGSMEEALEFTNDMEN----HGV--EPDIVTYNILANGFRILGLISGAWKVV 363

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M    +NPD+VTY  LI G C   +  E+  L  +M+ QG++  +VT+ V++  LCK+
Sbjct: 364 QRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVTYTVLLSSLCKS 423

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           G++DEA  LL  M + G+ P+  T+S L+ G C  G V  A EL+  M
Sbjct: 424 GRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEM 471



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 78/279 (27%), Positives = 135/279 (48%), Gaps = 6/279 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N++    AK  +    +  +K++   G+ P + T+N LI  FCK G+++    +L  I 
Sbjct: 518 YNIMIDGYAKLGNIGEAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIK 577

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P +V +T+L+ G C E  +     +  +++A   KP  ITY+ ++ GLC+ G   
Sbjct: 578 VHGLVPTSVTYTTLMNGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLH 637

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            ++ L + M    G F     P+ +TY T+I   CK   + KA +L  QM   ++ P  V
Sbjct: 638 ESVQLLKYMY-ARGLF-----PDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPV 691

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN LI+G C   +  +A+ LL+ + DQ ++   V +  I+   C  G +  A      M
Sbjct: 692 TYNVLINGLCVYGNLKDADRLLVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQM 751

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           + RG   +   +S +++  C    +  AK  F  M + G
Sbjct: 752 VERGFEVSIRDYSAVINRLCKRNLITDAKFFFCMMLTHG 790



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 76/281 (27%), Positives = 135/281 (48%), Gaps = 8/281 (2%)

Query: 105 PPLTSFN-LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P + +FN L++G   K K  + V  L   +   GL P   TY  L+N +C+ G +   F 
Sbjct: 548 PTIVTFNSLIYGFCKKGKLAEAV-KLLDTIKVHGLVPTSVTYTTLMNGYCEEGDMHSMFD 606

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +L  +      P  + +T ++KGLC E R+ E+  L   + A G  P+ ITY+T+I   C
Sbjct: 607 MLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLFPDQITYNTVIQSFC 666

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +      A  L  +M   +       +P+ VTY  +I+GLC  G +  A  L + ++D++
Sbjct: 667 KAHDLQKAFQLHNQMLQHS------LQPSPVTYNVLINGLCVYGNLKDADRLLVTLQDQS 720

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I    V Y ++I   C   D   A     +M+++G +  +  ++ +++ LCK   + +A 
Sbjct: 721 IRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCKRNLITDAK 780

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
               +M+  G+ P+      +++ F  +G  N   E+F  M
Sbjct: 781 FFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMM 821



 Score =  118 bits (295), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 66/198 (33%), Positives = 106/198 (53%), Gaps = 6/198 (3%)

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           ++ ++KA G   N  T   LI+GLCR      A+    E   G  +FG    P+ V++  
Sbjct: 222 VYNEIKASGVPQNEYTNPILIDGLCRQSRLQDAVTFLRE--TGGEEFG----PSVVSFNA 275

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++ G CK G VD AK  F  M    + PDV +YN L+HG C A    EA     +M + G
Sbjct: 276 LMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHG 335

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
           V+PD+VT+N++ +     G +  A ++++ M+L G+NP+  T++ L+ G C  G +  + 
Sbjct: 336 VEPDIVTYNILANGFRILGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESF 395

Query: 379 ELFVSMESMGCKHTVFSY 396
           +L   M S G K ++ +Y
Sbjct: 396 KLKEKMLSQGLKLSIVTY 413



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 49/213 (23%)

Query: 188 CAESR---IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNG 243
           CA SR   + +A  +  K+K    + ++ TY++L+  L    HT +  +++ E+ A+G  
Sbjct: 176 CAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNL---RHTDIMWDVYNEIKASG-- 230

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
                   N  T   +IDGLC++  +                 D VT+            
Sbjct: 231 -----VPQNEYTNPILIDGLCRQSRLQ----------------DAVTF------------ 257

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
                  L E   +   P VV+FN +M   CK G +D A     +MI  G+ P+  +++ 
Sbjct: 258 -------LRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSFFCMMIKYGLLPDVYSYNI 310

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+ G C+ G +  A E    ME+ G +  + +Y
Sbjct: 311 LLHGLCVAGSMEEALEFTNDMENHGVEPDIVTY 343


>gi|218196531|gb|EEC78958.1| hypothetical protein OsI_19424 [Oryza sativa Indica Group]
          Length = 975

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 93/302 (30%), Positives = 158/302 (52%), Gaps = 7/302 (2%)

Query: 96  YMLNMRPSPPPLT-SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK 154
           +ML++R    P + SFN++   L K K  D  L+L K + S G    +  +N LI+  C 
Sbjct: 428 HMLHIREDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCN 487

Query: 155 MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           M R+  G+ +  ++     TP    + SL  G+C       A  L  +++  G  P +  
Sbjct: 488 MDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKN 547

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
            + ++  LC +G    A+   + M     + G +  P+ VTY+  ++G+C  G VD A  
Sbjct: 548 CTEMVQQLCFSGRVTEAVQFLDGML----QIGFL--PDIVTYSAAMNGMCNTGEVDDALH 601

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           LF  +  K   PDVV +N LI+GF  ++  +EA  ++ EM+++G+ P VVT+N+++D  C
Sbjct: 602 LFRDISCKYYLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCC 661

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           K G++++A   L+ M+     P   T+++L+DGFC  GR + A +L+  M   GC     
Sbjct: 662 KTGRIEKAISYLDKMVYEEKQPTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNI 721

Query: 395 SY 396
           +Y
Sbjct: 722 AY 723



 Score =  101 bits (252), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 149/393 (37%), Gaps = 91/393 (23%)

Query: 84  AITPNEAFCIFDYMLNM-RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           A  P++A  +F  M  +       LT+  + F   +K    D  + L   + + G+    
Sbjct: 224 AGRPDDANDVFQRMSELGWVDEHVLTTLMVAF---SKWGKVDGAVELLGSMEALGMRLSE 280

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T ++L++ F K GRV     +  +++   F  D   ++ LI+GLC +  I  A  LF +
Sbjct: 281 KTLSVLVHGFTKQGRVDKAMDMFAKMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKE 340

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIV-------------------------------- 230
           +K+ G  P+V     +I   CR G   V                                
Sbjct: 341 MKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFINENAEYLKSGSVVPLYNVVLEELVHCG 400

Query: 231 ----ALNLFEEMANG-----NGKFGVV--------CKPNTVTYTTIIDGLCKEGFVDKAK 273
               A  L   M  G     N   G           KPN+ ++  ++ GLCK   +D A 
Sbjct: 401 EVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIREDAKPNSDSFNIVVCGLCKVKKLDMAL 460

Query: 274 EL-----------------------------------FLQMKDKNINPDVVTYNSLIHGF 298
            L                                   F QMKD  + P   TYNSL +G 
Sbjct: 461 ALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGIFNQMKDLGLTPSEFTYNSLFYGI 520

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C       A  LL EM   G  P +     ++ +LC +G++ EA + L+ M+  G  P+ 
Sbjct: 521 CRRKYPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDI 580

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            T+S  M+G C TG V+ A  LF     + CK+
Sbjct: 581 VTYSAAMNGMCNTGEVDDALHLF---RDISCKY 610



 Score =  100 bits (249), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 72/305 (23%), Positives = 129/305 (42%), Gaps = 42/305 (13%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG---------- 137
            E + IF+ M ++  +P   T +N LF  + + K+    L L + + + G          
Sbjct: 492 EEGYGIFNQMKDLGLTPSEFT-YNSLFYGICRRKYPKAALDLLREMQTNGHPPWIKNCTE 550

Query: 138 -------------------------LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
                                      PD+ TY+  +N  C  G V     +   I    
Sbjct: 551 MVQQLCFSGRVTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGEVDDALHLFRDISCKY 610

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           + PD VA   LI G    S++ EA  +  ++   G  P+V+TY+ +I+  C+TG    A+
Sbjct: 611 YLPDVVAHNILINGFRKSSKLDEAQKIMEEMLEKGLFPSVVTYNLMIDVCCKTGRIEKAI 670

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           +  ++M     +      P  +TYT++IDG C  G  D+A +L+ +M++K   P+ + Y 
Sbjct: 671 SYLDKMVYEEKQ------PTVITYTSLIDGFCSAGRPDEAIKLWCEMREKGCAPNNIAYT 724

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           + I+G         A     EM+ +G + D  +    ++ L  NG   +   LL+ ++ +
Sbjct: 725 AFINGLRKCGRIETALTYFEEMVTKGFELDTFSLLYFINFLISNGHPMKGCELLKEVLQK 784

Query: 353 GVNPN 357
               N
Sbjct: 785 DTYGN 789



 Score = 97.8 bits (242), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 143/345 (41%), Gaps = 63/345 (18%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           +   L  CL      DT +  F    ++ G  P+ YTYN L++   K GR       L  
Sbjct: 140 ALGFLLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRADDAQARLRE 199

Query: 168 ILRSC--FTPDAVAFTSLIKGLCAESRIMEAAALFTK----------------------- 202
           ++  C   + D    TSL++  C   R  +A  +F +                       
Sbjct: 200 MVARCGDGSVDKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEHVLTTLMVAFSKWG 259

Query: 203 -----------LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
                      ++A G + +  T S L++G  + G    A+++F +M +    +G V   
Sbjct: 260 KVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFAKMVS----YGFVV-- 313

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           +   Y+ +I+GLC++  + +A +LF +MK   + PDV     +I  FC   D+      +
Sbjct: 314 DLAMYSVLIEGLCQQKDIARAVKLFKEMKSSGVAPDVRLLKKVIEAFCREGDFAVIGPFI 373

Query: 312 IEMMDQGVQPDVVT-FNVIMDELCKNGKMDEASRLLELMILRG----------------- 353
            E  +      VV  +NV+++EL   G+++ A +LL  M+  G                 
Sbjct: 374 NENAEYLKSGSVVPLYNVVLEELVHCGEVEAAYQLLRSMVCGGQAVNNDVAGGAHMLHIR 433

Query: 354 --VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               PN+ +F+ ++ G C   +++ A  L   M S+GCK  +  +
Sbjct: 434 EDAKPNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMF 478



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 61/221 (27%), Positives = 101/221 (45%), Gaps = 10/221 (4%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA-FGCKPNVITYSTLINGLCRTGHT 228
           R   TP A+ F  L++ L A      A   F   +A FGC PN  TY+ L++ L + G  
Sbjct: 133 RCLMTPGALGF--LLRCLGAAGLPDTAVRAFDAARASFGCTPNSYTYNCLLDALAKAGRA 190

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN-INPD 287
             A     EM    G   V    +  T T+++   C  G  D A ++F +M +   ++  
Sbjct: 191 DDAQARLREMVARCGDGSV----DKYTLTSLLRCYCNAGRPDDANDVFQRMSELGWVDEH 246

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+T  +L+  F      + A  LL  M   G++    T +V++    K G++D+A  +  
Sbjct: 247 VLT--TLMVAFSKWGKVDGAVELLGSMEALGMRLSEKTLSVLVHGFTKQGRVDKAMDMFA 304

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            M+  G   + + +S L++G C    +  A +LF  M+S G
Sbjct: 305 KMVSYGFVVDLAMYSVLIEGLCQQKDIARAVKLFKEMKSSG 345


>gi|255542890|ref|XP_002512508.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548469|gb|EEF49960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 444

 Score =  160 bits (405), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 141/270 (52%), Gaps = 9/270 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +TS N L   L K    D +L   K + + G+ P+  T+NILI+ FC    VS    V  
Sbjct: 183 VTSCNPLMSGLVKMYKADAIL---KEMKADGICPNEVTFNILIDGFCNDKNVSVAMKVFA 239

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    P+ V + SLI GLC   ++ EA  L  ++     +PN+IT++ L+NG C+  
Sbjct: 240 EMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNK 299

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  LFE+M            PN  TY  +ID  CK+  ++ A  L+  M  K + P
Sbjct: 300 MVKQAGELFEDMPKQR------ITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYP 353

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           DV TYN LI G C   D   A   + EM  + ++ D++T+N++MD LC  G+M +  RLL
Sbjct: 354 DVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLCNKGEMKKTLRLL 413

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
           + M  +G+ P+  T++T++DG+   G +  
Sbjct: 414 DEMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/267 (31%), Positives = 132/267 (49%), Gaps = 9/267 (3%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
           FKR +  GL   + + N L++   KM +      +L  +      P+ V F  LI G C 
Sbjct: 171 FKRASDYGLKLSVTSCNPLMSGLVKMYKAD---AILKEMKADGICPNEVTFNILIDGFCN 227

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
           +  +  A  +F ++   G KPNV+TY++LINGLC  G    A  L ++M N         
Sbjct: 228 DKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNS------CL 281

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           +PN +T+  +++G CK   V +A ELF  M  + I P+V TYN LI  +C   +  +A  
Sbjct: 282 EPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFA 341

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           L   M+ +GV PDV T+N ++  LC+ G ++ A   +  M  + +  +  T++ LMD  C
Sbjct: 342 LYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNILMDSLC 401

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             G +     L   M   G K +  +Y
Sbjct: 402 NKGEMKKTLRLLDEMCKKGLKPSQLTY 428



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 79/251 (31%), Positives = 136/251 (54%), Gaps = 9/251 (3%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           +IL+    K  +   GF    R           +   L+ GL    ++ +A A+  ++KA
Sbjct: 152 DILVWADAKNLKTRLGFEAFKRASDYGLKLSVTSCNPLMSGLV---KMYKADAILKEMKA 208

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  PN +T++ LI+G C   +  VA+ +F EM     + GV  KPN VTY ++I+GLC 
Sbjct: 209 DGICPNEVTFNILIDGFCNDKNVSVAMKVFAEM----NRQGV--KPNVVTYNSLINGLCN 262

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G V++A  L  QM +  + P+++T+N+L++GFC      +A  L  +M  Q + P+V T
Sbjct: 263 NGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTT 322

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +N+++D  CK+  M++A  L  +M+ +GV P+ ST++ L+ G C  G +  A+     M+
Sbjct: 323 YNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMD 382

Query: 386 SMGCKHTVFSY 396
           +   K  + +Y
Sbjct: 383 TKHLKADLITY 393



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 68/237 (28%), Positives = 120/237 (50%), Gaps = 6/237 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FN+L       K+    + +F  +N  G+ P++ TYN LIN  C  G+V+    +
Sbjct: 213 PNEVTFNILIDGFCNDKNVSVAMKVFAEMNRQGVKPNVVTYNSLINGLCNNGKVNEATTL 272

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++ SC  P+ +   +L+ G C    + +A  LF  +      PNV TY+ LI+  C+
Sbjct: 273 RDQMVNSCLEPNIITHNALLNGFCKNKMVKQAGELFEDMPKQRITPNVTTYNILIDAYCK 332

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             +   A  L+  M  G G +     P+  TY  +I GLC++G ++ A+    +M  K++
Sbjct: 333 DENMEDAFALYRIML-GKGVY-----PDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHL 386

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
             D++TYN L+   C   +  +   LL EM  +G++P  +T+N ++D   K G + +
Sbjct: 387 KADLITYNILMDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443



 Score = 94.4 bits (233), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/201 (28%), Positives = 97/201 (48%), Gaps = 6/201 (2%)

Query: 98  LNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           +N +   P + ++N L   L      +   +L  ++ ++ L P++ T+N L+N FCK   
Sbjct: 241 MNRQGVKPNVVTYNSLINGLCNNGKVNEATTLRDQMVNSCLEPNIITHNALLNGFCKNKM 300

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V     +   + +   TP+   +  LI   C +  + +A AL+  +   G  P+V TY+ 
Sbjct: 301 VKQAGELFEDMPKQRITPNVTTYNILIDAYCKDENMEDAFALYRIMLGKGVYPDVSTYNC 360

Query: 218 LINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
           LI GLCR G    A N   EM   +       K + +TY  ++D LC +G + K   L  
Sbjct: 361 LIVGLCRKGDLEGARNRVSEMDTKH------LKADLITYNILMDSLCNKGEMKKTLRLLD 414

Query: 278 QMKDKNINPDVVTYNSLIHGF 298
           +M  K + P  +TYN++I G+
Sbjct: 415 EMCKKGLKPSQLTYNTMIDGY 435



 Score = 43.1 bits (100), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 1/107 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF ++  ML  +   P ++++N L   L +    +   +    +++  L  DL TYNIL
Sbjct: 338 DAFALYRIMLG-KGVYPDVSTYNCLIVGLCRKGDLEGARNRVSEMDTKHLKADLITYNIL 396

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
           ++  C  G +     +L  + +    P  + + ++I G   E  + +
Sbjct: 397 MDSLCNKGEMKKTLRLLDEMCKKGLKPSQLTYNTMIDGYSKEGNLRQ 443


>gi|302754000|ref|XP_002960424.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
 gi|300171363|gb|EFJ37963.1| hypothetical protein SELMODRAFT_74408 [Selaginella moellendorffii]
          Length = 321

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/257 (35%), Positives = 135/257 (52%), Gaps = 8/257 (3%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAES 191
           +   G  P + T+ IL++  CK  R++  F ++  +  R CF P+A+ F  ++  LC E 
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCF-PNALVFNGIMDALCKEG 59

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
           R  EA      +++ G  P ++TY+ LI+G C+      AL + +EM  G G      +P
Sbjct: 60  RSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEM-TGRGH-----EP 113

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           N VTY T + GLCK G VD A  LF  M +K I  DV  Y +LI G C A    EA  LL
Sbjct: 114 NHVTYNTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLL 173

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM + G  P    +N I+  LCK  +++EA +L + M   G+ P+  TF  ++ G+C  
Sbjct: 174 DEMENSGCVPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRG 233

Query: 372 GRVNHAKELFVSMESMG 388
            R++ A  L   M+S G
Sbjct: 234 HRIDDALLLLQQMKSAG 250



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 85/276 (30%), Positives = 142/276 (51%), Gaps = 7/276 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF + + M   R   P    FN +   L K           + + S G+ P + TYNIL
Sbjct: 28  DAFELVEVMAE-RGCFPNALVFNGIMDALCKEGRSAEAYGYIETMRSMGVSPTIVTYNIL 86

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I+ FCK  ++     +L  +      P+ V + + + GLC   ++ +A ALF  +     
Sbjct: 87  IDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCKYGKVDDALALFRAMTEKKI 146

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           + +V  Y+TLI+GLC+ G    A +L +EM N        C P    Y  I+  LCK   
Sbjct: 147 RLDVYGYTTLIDGLCQAGKLAEAYSLLDEMENSG------CVPKPGCYNAILSWLCKGSR 200

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A +LF +M    I PD +T+  ++ G+C  +  ++A  LL +M   G+ P  V +N 
Sbjct: 201 INEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNT 260

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           ++D L + G++ EA RLL+ MI RG++PN+ T++ +
Sbjct: 261 LIDALNRAGRVSEAYRLLQEMISRGLSPNSRTYALM 296



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/284 (29%), Positives = 138/284 (48%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F +L   L K         L + +   G FP+   +N +++  CK GR +  +  
Sbjct: 8   PTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAYGY 67

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +     +P  V +  LI G C E ++  A  +  ++   G +PN +TY+T ++GLC+
Sbjct: 68  IETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGLCK 127

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL LF  M     +  V        YTT+IDGLC+ G + +A  L  +M++   
Sbjct: 128 YGKVDDALALFRAMTEKKIRLDVY------GYTTLIDGLCQAGKLAEAYSLLDEMENSGC 181

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P    YN+++   C  +  NEA+ L   M   G+ PD +TF +++   C+  ++D+A  
Sbjct: 182 VPKPGCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMMVFGYCRGHRIDDALL 241

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LL+ M   G+ P    ++TL+D     GRV+ A  L   M S G
Sbjct: 242 LLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRG 285



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 66/183 (36%), Positives = 97/183 (53%), Gaps = 6/183 (3%)

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P V+T+  L++GLC+      A  L E MA         C PN + +  I+D LCKE
Sbjct: 5   GCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERG------CFPNALVFNGIMDALCKE 58

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A      M+   ++P +VTYN LI GFC     + A  +L EM  +G +P+ VT+
Sbjct: 59  GRSAEAYGYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTY 118

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N  +  LCK GK+D+A  L   M  + +  +   ++TL+DG C  G++  A  L   ME+
Sbjct: 119 NTFLHGLCKYGKVDDALALFRAMTEKKIRLDVYGYTTLIDGLCQAGKLAEAYSLLDEMEN 178

Query: 387 MGC 389
            GC
Sbjct: 179 SGC 181



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
           C P  VT+  ++DGLCK   +  A EL   M ++   P+ + +N ++   C      EA 
Sbjct: 6   CIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGRSAEAY 65

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
             +  M   GV P +VT+N+++D  CK  K+  A  +L+ M  RG  PN  T++T + G 
Sbjct: 66  GYIETMRSMGVSPTIVTYNILIDGFCKEEKLHRALEILQEMTGRGHEPNHVTYNTFLHGL 125

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C  G+V+ A  LF +M     +  V+ Y
Sbjct: 126 CKYGKVDDALALFRAMTEKKIRLDVYGY 153



 Score = 68.9 bits (167), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 70/149 (46%), Gaps = 1/149 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA+ + D M N    P P   +N +   L K    +    LFKR+  +G+ PD  T+ ++
Sbjct: 168 EAYSLLDEMENSGCVPKP-GCYNAILSWLCKGSRINEAHKLFKRMTGSGILPDWLTFGMM 226

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  +C+  R+    ++L ++  +   P  V + +LI  L    R+ EA  L  ++ + G 
Sbjct: 227 VFGYCRGHRIDDALLLLQQMKSAGLAPREVIYNTLIDALNRAGRVSEAYRLLQEMISRGL 286

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEE 237
            PN  TY+ +        + +V L+  +E
Sbjct: 287 SPNSRTYALMRKQQTDDSNLVVELDYRKE 315



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 32/83 (38%), Positives = 47/83 (56%)

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M ++G  P VVTF +++D LCK  ++ +A  L+E+M  RG  PN   F+ +MD  C  GR
Sbjct: 1   MAEKGCIPTVVTFGILVDGLCKANRLTDAFELVEVMAERGCFPNALVFNGIMDALCKEGR 60

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
              A     +M SMG   T+ +Y
Sbjct: 61  SAEAYGYIETMRSMGVSPTIVTY 83


>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g18475-like [Vitis vinifera]
          Length = 513

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/311 (29%), Positives = 162/311 (52%), Gaps = 11/311 (3%)

Query: 85  ITPNEAFCIFDYMLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL-FP 140
           +  N+      ++LN + S    P    FN+L     K    D+   + + +  + + +P
Sbjct: 175 VESNQVDLTRKFLLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYP 234

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           +L TY+ LIN  C  GR+     +   ++ +    PDA+ + +LI G C   ++  A  +
Sbjct: 235 NLITYSTLINGLCGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKI 294

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              +K  GC PNV  YS L+NG C+ G    A  +F+EM +     G+  KP+TV YTT+
Sbjct: 295 MEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEVFDEMKS----LGL--KPDTVGYTTL 348

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+  C+ G VD+A EL   M++     D VT+N ++ G C    + EA  +L  +  +GV
Sbjct: 349 INFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGV 408

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
             +  ++ ++++ LC+ G++ +A++L+ LM+ RGV P+ +T + L+   C  G+V  A  
Sbjct: 409 YLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVM 468

Query: 380 LFVSMESMGCK 390
             + +  +G K
Sbjct: 469 ALLGLLELGFK 479



 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 112/364 (30%), Positives = 178/364 (48%), Gaps = 17/364 (4%)

Query: 35  KSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCK-SSG-----QGDITAITPN 88
           +   S N  +  T   KL +S +    D A L Q   E CK   G         + ++ +
Sbjct: 86  QRGFSHNNATYATILHKLAKSKKFQAID-AVLHQMTYETCKFHEGIFLNLMKHFSKLSLH 144

Query: 89  EAFC-IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD-TVLSLFKRLNSTGLFPDLYTYN 146
           E    +FD +  +    P L + +     L ++   D T   L     S  L P+   +N
Sbjct: 145 ERVVEMFDAIRPIVREKPSLKAISTCLNLLVESNQVDLTRKFLLNSKKSLNLEPNTCIFN 204

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           IL+   CK G +   F V+  + +S  + P+ + +++LI GLC   R+ EA  LF ++ +
Sbjct: 205 ILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIELFEEMVS 264

Query: 206 FG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
                P+ +TY+ LING C       AL + E M   NG     C PN   Y+ +++G C
Sbjct: 265 KDQILPDALTYNALINGFCHGEKVDRALKIMEFMKK-NG-----CNPNVFNYSALMNGFC 318

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           KEG +++AKE+F +MK   + PD V Y +LI+ FC A   +EA  LL +M +   + D V
Sbjct: 319 KEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENKCRADTV 378

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           TFNVI+  LC+ G+ +EA  +LE +   GV  N +++  +++  C  G +  A +L   M
Sbjct: 379 TFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLM 438

Query: 385 ESMG 388
              G
Sbjct: 439 LGRG 442



 Score =  144 bits (363), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 86/314 (27%), Positives = 159/314 (50%), Gaps = 15/314 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            +K  CK+   GDI     + AF + + M     S P L +++ L   L  +      + 
Sbjct: 206 LVKHHCKN---GDI-----DSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEAIE 257

Query: 129 LFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           LF+ + S   + PD  TYN LIN FC   +V     ++  + ++   P+   +++L+ G 
Sbjct: 258 LFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGF 317

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C E R+ EA  +F ++K+ G KP+ + Y+TLIN  CR G    A+ L ++M         
Sbjct: 318 CKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRENK----- 372

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C+ +TVT+  I+ GLC+EG  ++A+ +  ++  + +  +  +Y  +++  C   +  +A
Sbjct: 373 -CRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKA 431

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L+  M+ +GV P   T N ++  LC+ GK+ +A   L  ++  G  P  ++++ L++ 
Sbjct: 432 TQLVGLMLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVEL 491

Query: 368 FCLTGRVNHAKELF 381
            C   ++  A EL 
Sbjct: 492 ICRERKLLPAFELL 505



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 74/225 (32%), Positives = 115/225 (51%), Gaps = 6/225 (2%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVA 231
             P+   F  L+K  C    I  A  +  ++K +    PN+ITYSTLINGLC +G    A
Sbjct: 196 LEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGLCGSGRLKEA 255

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           + LFEEM + +        P+ +TY  +I+G C    VD+A ++   MK    NP+V  Y
Sbjct: 256 IELFEEMVSKDQIL-----PDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNY 310

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           ++L++GFC      EA  +  EM   G++PD V +  +++  C+ G++DEA  LL+ M  
Sbjct: 311 SALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYTTLINFFCRAGRVDEAMELLKDMRE 370

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                +T TF+ ++ G C  GR   A+ +   +   G      SY
Sbjct: 371 NKCRADTVTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASY 415



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/131 (21%), Positives = 60/131 (45%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN++ G L +   ++    + +RL   G++ +  +Y I++N  C+ G +     ++G 
Sbjct: 378 VTFNVILGGLCREGRFEEARGMLERLPYEGVYLNKASYRIVLNSLCREGELQKATQLVGL 437

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L     P       L+  LC   ++ +A      L   G KP   +++ L+  +CR   
Sbjct: 438 MLGRGVLPHFATSNELLVHLCEAGKVGDAVMALLGLLELGFKPEPNSWALLVELICRERK 497

Query: 228 TIVALNLFEEM 238
            + A  L +++
Sbjct: 498 LLPAFELLDDL 508


>gi|224113307|ref|XP_002316451.1| predicted protein [Populus trichocarpa]
 gi|222865491|gb|EEF02622.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/308 (30%), Positives = 162/308 (52%), Gaps = 8/308 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F+ M   R   P +  +N+L G L K K       LF  ++   L P+  T+N LI
Sbjct: 85  AMELFETM-KRRKVVPNVFVYNVLIGGLCKEKRIRDAEKLFGEMSVRNLVPNRVTFNTLI 143

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + +CK G V     +  R+ +    P  + F SL+ GLC   RI EA  +  ++K  G  
Sbjct: 144 DGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFV 203

Query: 210 PNVITYSTLINGLCRTGHTI-VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           P+  TYS + +GL ++      AL+L+ E A G G      K +  T + +++GLCKEG 
Sbjct: 204 PDGFTYSIIFDGLLKSDDGAGAALDLYRE-AIGKG-----VKIDNYTCSILLNGLCKEGK 257

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V+KA+E+   + +  + P  V YN++++G+C   D + A   + +M  +G++P+ + FN 
Sbjct: 258 VEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMESRGLRPNCIAFNS 317

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D+ C+   +D+A   ++ M+ +G+ P+  T++ L+DG+      +   ++   ME  G
Sbjct: 318 VIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSRCFQILEEMEENG 377

Query: 389 CKHTVFSY 396
            K  V SY
Sbjct: 378 EKPNVISY 385



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 90/281 (32%), Positives = 141/281 (50%), Gaps = 9/281 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+  L  CL K         + + +   G+ P+   YN+LI+  C +G++      
Sbjct: 380 PNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLIDGSCTVGKLREALRF 439

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + ++      V + SLIKGLC   ++ EA  +F  + + G  P+VITY++LI+G   
Sbjct: 440 FDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHCPDVITYNSLISGYSN 499

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE-LFLQMKDKN 283
            G++   L L+E M     K G+  KP   T+  +I G  KEG   K KE LF +M   N
Sbjct: 500 AGNSQKCLELYETMK----KLGL--KPTINTFHPLISGCSKEGI--KLKETLFNEMLQMN 551

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           ++PD V YN++IH +       +A  L  EM+D GV+PD  T+N ++    K GK+ E  
Sbjct: 552 LSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNSLILGHLKEGKLSETK 611

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            L++ M  +G+ P   T+S L+ G C     N A   +  M
Sbjct: 612 DLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREM 652



 Score =  135 bits (341), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           ++L   L K    +    + K L   GL P    YN ++N +C++G +    + + ++  
Sbjct: 246 SILLNGLCKEGKVEKAEEVLKSLVEHGLVPGEVIYNTIVNGYCQIGDMDRAILTIEQMES 305

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               P+ +AF S+I   C    I +A     K+   G  P+V TY+ LI+G  R      
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
              + EEM   NG+     KPN ++Y ++I+ LCK+G + +A+ +   M  + + P+   
Sbjct: 366 CFQILEEMEE-NGE-----KPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANI 419

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN LI G C      EA     EM   G+   +VT+N ++  LCK GK+ EA  +  L+ 
Sbjct: 420 YNMLIDGSCTVGKLREALRFFDEMSKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLIT 479

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G  P+  T+++L+ G+   G      EL+ +M+ +G K T+ ++
Sbjct: 480 STGHCPDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTF 525



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 91/325 (28%), Positives = 150/325 (46%), Gaps = 46/325 (14%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH 160
           R   P   +FN +     + +  D      K++   G+ P + TYNILI+ + ++   S 
Sbjct: 306 RGLRPNCIAFNSVIDKFCEMQMIDKAEEWVKKMVGKGIAPSVETYNILIDGYGRLCVFSR 365

Query: 161 GFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            F +L  +  +   P+ +++ SLI  LC + +I+EA  +   +   G  PN   Y+ LI+
Sbjct: 366 CFQILEEMEENGEKPNVISYGSLINCLCKDGKILEAEMVLRDMVGRGVLPNANIYNMLID 425

Query: 221 GLCRTGHTIVALNLFEEMA-NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
           G C  G    AL  F+EM+ NG G          VTY ++I GLCK G + +A+E+F  +
Sbjct: 426 GSCTVGKLREALRFFDEMSKNGIG-------ATIVTYNSLIKGLCKMGKLKEAEEMFFLI 478

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLI--------------------------- 312
                 PDV+TYNSLI G  Y+N  N   CL +                           
Sbjct: 479 TSTGHCPDVITYNSLISG--YSNAGNSQKCLELYETMKKLGLKPTINTFHPLISGCSKEG 536

Query: 313 ---------EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
                    EM+   + PD V +N ++    + G + +A  L + M+  GV P+  T+++
Sbjct: 537 IKLKETLFNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVDMGVRPDNKTYNS 596

Query: 364 LMDGFCLTGRVNHAKELFVSMESMG 388
           L+ G    G+++  K+L   M++ G
Sbjct: 597 LILGHLKEGKLSETKDLVDDMKAKG 621



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/299 (31%), Positives = 133/299 (44%), Gaps = 47/299 (15%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++D+M       P      ++   L ++K +D VL LFK +   G  PD   Y       
Sbjct: 18  LYDFM-RQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMVGLGFRPDKLVY------- 69

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              GR     V LG +                           A  LF  +K     PNV
Sbjct: 70  ---GRAMLAAVKLGDLKL-------------------------AMELFETMKRRKVVPNV 101

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             Y+ LI GLC+      A  LF EM+  N        PN VT+ T+IDG CK G VD A
Sbjct: 102 FVYNVLIGGLCKEKRIRDAEKLFGEMSVRN------LVPNRVTFNTLIDGYCKAGEVDVA 155

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             L  +MK + + P ++T+NSL+ G C A    EA C+L E+   G  PD  T+++I D 
Sbjct: 156 IGLRERMKKEKVEPSIITFNSLLSGLCKARRIEEARCMLNEIKCNGFVPDGFTYSIIFDG 215

Query: 333 LCKNGKMDEASRLLEL---MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           L K+   D A   L+L    I +GV  +  T S L++G C  G+V  A+E+  S+   G
Sbjct: 216 LLKSD--DGAGAALDLYREAIGKGVKIDNYTCSILLNGLCKEGKVEKAEEVLKSLVEHG 272



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/287 (29%), Positives = 130/287 (45%), Gaps = 9/287 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G  T     EA   FD M +       + ++N L   L K         +F  + STG  
Sbjct: 426 GSCTVGKLREALRFFDEM-SKNGIGATIVTYNSLIKGLCKMGKLKEAEEMFFLITSTGHC 484

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ TYN LI+ +   G       +   + +    P    F  LI G C++  I     L
Sbjct: 485 PDVITYNSLISGYSNAGNSQKCLELYETMKKLGLKPTINTFHPLISG-CSKEGIKLKETL 543

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           F ++      P+ + Y+ +I+    TGH   A +L +EM +     GV  +P+  TY ++
Sbjct: 544 FNEMLQMNLSPDRVVYNAMIHCYQETGHVQKAFSLQKEMVD----MGV--RPDNKTYNSL 597

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I G  KEG + + K+L   MK K + P+  TY+ LI G C   D+N A     EM++ G 
Sbjct: 598 ILGHLKEGKLSETKDLVDDMKAKGLIPEADTYSLLIQGHCDLKDFNGAYVWYREMLENGF 657

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
            P+V   N +   L K+G++ EA  +   MI  G++ N  T   L D
Sbjct: 658 LPNVCICNELSTGLRKDGRLQEAQSICSEMIANGMD-NLDTNEDLSD 703



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/211 (28%), Positives = 103/211 (48%), Gaps = 7/211 (3%)

Query: 187 LCAESRIM-EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           +C+ES++  + + L+  ++  G  P+      ++  L  +      L+LF+EM       
Sbjct: 5   VCSESKMHSQVSELYDFMRQEGRLPSFGYVRMIVESLVESKKFDNVLDLFKEMV------ 58

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G+  +P+ + Y   +    K G +  A ELF  MK + + P+V  YN LI G C      
Sbjct: 59  GLGFRPDKLVYGRAMLAAVKLGDLKLAMELFETMKRRKVVPNVFVYNVLIGGLCKEKRIR 118

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A  L  EM  + + P+ VTFN ++D  CK G++D A  L E M    V P+  TF++L+
Sbjct: 119 DAEKLFGEMSVRNLVPNRVTFNTLIDGYCKAGEVDVAIGLRERMKKEKVEPSIITFNSLL 178

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G C   R+  A+ +   ++  G     F+Y
Sbjct: 179 SGLCKARRIEEARCMLNEIKCNGFVPDGFTY 209


>gi|218188821|gb|EEC71248.1| hypothetical protein OsI_03217 [Oryza sativa Indica Group]
          Length = 571

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 99/292 (33%), Positives = 145/292 (49%), Gaps = 15/292 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P    S+  +   L    H     SL   + + G  P   TYN+L+   C    V     
Sbjct: 135 PHSARSYTAVLAALVAHSHLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDA 194

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           V  R+ R+   PDA ++ ++I GLC   R+ EA  LF ++ A G  P V+TY+TLI+ L 
Sbjct: 195 V--RVFRNIPKPDACSYNTVIDGLCRRGRLPEARDLFAEMIANGTAPTVVTYTTLIHWLA 252

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R      AL LF+EMA    + G++  PN VTY+++IDGLCK G    A EL  +M  + 
Sbjct: 253 REACFDDALKLFDEMA----RRGIM--PNVVTYSSLIDGLCKGGRAASAVELLDRMVKER 306

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ +TY+S+I G C      +A  +L  M  QG +PD   F  ++  LC  G+  EAS
Sbjct: 307 KLPNTITYSSVIDGLCKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEAS 366

Query: 344 RLLELMILRGVNPNTSTFS-------TLMDGFCLTGRVNHAKELFVSMESMG 388
             L+ M   G+ PN  T+S        ++   C  G V  A +++ SM + G
Sbjct: 367 NYLDEMNFAGIRPNRLTWSLHGRINDAVVTALCSKGEVVRAFQVYQSMRTRG 418



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/303 (30%), Positives = 142/303 (46%), Gaps = 22/303 (7%)

Query: 102 PSP----PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNST-GLFPDLYTYNILINCFCKMG 156
           PSP    PP  S   L    ++       L LF+   S  GL     +Y  ++       
Sbjct: 96  PSPGELEPPFLS---LLRAYSRAHQPLAALHLFRSAPSALGLPHSARSYTAVLAALVAHS 152

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR--IMEAAALFTKLKAFGCKPNVIT 214
            +S    +L  +  + F P    +  L+K  C+++   I +A  +F  +     KP+  +
Sbjct: 153 HLSLARSLLADMRAAGFAPTTATYNVLVKAHCSDAAVPIDDAVRVFRNIP----KPDACS 208

Query: 215 YSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           Y+T+I+GLCR G    A +LF EM ANG         P  VTYTT+I  L +E   D A 
Sbjct: 209 YNTVIDGLCRRGRLPEARDLFAEMIANGTA-------PTVVTYTTLIHWLAREACFDDAL 261

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           +LF +M  + I P+VVTY+SLI G C       A  LL  M+ +   P+ +T++ ++D L
Sbjct: 262 KLFDEMARRGIMPNVVTYSSLIDGLCKGGRAASAVELLDRMVKERKLPNTITYSSVIDGL 321

Query: 334 CKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTV 393
           CK G + +A  +L+ M L+G  P+   F  L+ G C  GR   A      M   G +   
Sbjct: 322 CKEGCLGQAMEILDRMRLQGRKPDAGLFGKLIVGLCDAGRALEASNYLDEMNFAGIRPNR 381

Query: 394 FSY 396
            ++
Sbjct: 382 LTW 384


>gi|255661000|gb|ACU25669.1| pentatricopeptide repeat-containing protein [Mulguraea scoparia]
          Length = 376

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +    D  TY IL++ FCK G ++    VL 
Sbjct: 59  VSSFNIMMRGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ + +A ++   +   GCKPN   Y+TLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        V C P  +TY T+I+GLCK     +A +L  +M +K +NP
Sbjct: 179 KFEDAIRVFREMGT------VHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +    A  L  +++ +G +PDV   N+++  LC  GK   A  L 
Sbjct: 233 SVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQRALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  T +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARVLRNGLEPDIISY 342



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 144/297 (48%), Gaps = 8/297 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  ++  + SP  +    +L G     K  D    L++ + + G    + ++NI++   
Sbjct: 12  VYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDC-FELWEMMGNEG-NRSVSSFNIMMRGL 69

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G+V     +   + +S F  D++ +  L+ G C    I ++  +    +  G   + 
Sbjct: 70  FDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKSLHVLEMAEQKGGVLDA 129

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             YS +INGLC+  +   A+++  +M          CKPN   Y T+I+GL      + A
Sbjct: 130 FAYSAMINGLCKEANLDKAVSVLNDMIKSG------CKPNAHVYNTLINGLVGASKFEDA 183

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F +M   + +P ++TYN+LI+G C    + EA  L+ EM+++G+ P V+T++++M  
Sbjct: 184 IRVFREMGTVHCSPTIITYNTLINGLCKNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKG 243

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           LC + K++ A +L   +I +G  P+    + L+ G C  G+   A  L+  M    C
Sbjct: 244 LCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKTQRALSLYFXMNRWKC 300



 Score = 87.0 bits (214), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/210 (25%), Positives = 99/210 (47%), Gaps = 9/210 (4%)

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C    I  A  ++ ++      P+ + Y+T++NG  R         L+E M N   +   
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNTMLNGYFRVAKIKDCFELWEMMGNEGNR--- 57

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
               +  ++  ++ GL   G VD+   ++  MK  +   D +TY  L+HGFC     N++
Sbjct: 58  ----SVSSFNIMMRGLFDXGKVDEVISIWELMKKSDFVEDSITYGILVHGFCKNGXINKS 113

Query: 308 NCLLIEMMDQ-GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
              ++EM +Q G   D   ++ +++ LCK   +D+A  +L  MI  G  PN   ++TL++
Sbjct: 114 -LHVLEMAEQKGGVLDAFAYSAMINGLCKEANLDKAVSVLNDMIKSGCKPNAHVYNTLIN 172

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G     +   A  +F  M ++ C  T+ +Y
Sbjct: 173 GLVGASKFEDAIRVFREMGTVHCSPTIITY 202



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 93/207 (44%), Gaps = 16/207 (7%)

Query: 66  LEQFLKERCKSSGQ-------GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLA 118
           L   +K  CK +         G + A    +A  +F  M  +  SP  +T +N L   L 
Sbjct: 152 LNDMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTVHCSPTIIT-YNTLINGLC 210

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAV 178
           K + +     L K +   GL P + TY++L+   C   +V     +  +++   F PD  
Sbjct: 211 KNEMFGEAYDLVKEMLEKGLNPSVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQ 270

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE- 237
               LI GLC+  +   A +L+  +  + C PN++T++TL+ G  + G    AL ++   
Sbjct: 271 MHNILIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVIWARV 330

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLC 264
           + NG        +P+ ++Y   + GLC
Sbjct: 331 LRNG-------LEPDIISYNITLKGLC 350



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N+L   L         LSL+  +N     P+L T+N L+  F K G + +  V+
Sbjct: 267 PDVQMHNILIHGLCSVGKTQRALSLYFXMNRWKCAPNLVTHNTLMEGFYKDGDIRNALVI 326

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
             R+LR+   PD +++   +KGLC+ +RI +A
Sbjct: 327 WARVLRNGLEPDIISYNITLKGLCSCNRICDA 358


>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
 gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 874

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 81/285 (28%), Positives = 149/285 (52%), Gaps = 2/285 (0%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +FNLL   L  +   D    LF  +   G  P+ +T+ IL+  +CK G    G  +
Sbjct: 145 PQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGYCKAGLTDKGLEL 204

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+ V + +++   C E R  ++  +  K++  G  P+++T+++ I+ LC+
Sbjct: 205 LNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCK 264

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A  +F +M     ++  + +PN++TY  ++ G CK G ++ AK LF  +++ + 
Sbjct: 265 EGKVLDASRIFSDMELD--EYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              + +YN  + G      + EA  +L +M D+G+ P + ++N++MD LCK G + +A  
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKT 382

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ LM   GV P+  T+  L+ G+C  G+V+ AK L   M    C
Sbjct: 383 IVGLMKRNGVCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNC 427



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 90/315 (28%), Positives = 150/315 (47%), Gaps = 30/315 (9%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  L          D   SL + +      P+ YT NIL++   KMGR+S    +
Sbjct: 394 PDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEEL 453

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG----------------- 207
           L ++    +  D V    ++ GLC    + +A  +   ++  G                 
Sbjct: 454 LRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDD 513

Query: 208 ------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
                 C P++ITYSTL+NGLC+ G    A NLF EM       G   +P++V Y   I 
Sbjct: 514 SLIENNCLPDLITYSTLLNGLCKAGRFAEAKNLFAEM------MGEKLQPDSVAYNIFIH 567

Query: 262 GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
             CK+G +  A  +   M+ K  +  + TYNSLI G    N   E + L+ EM ++G+ P
Sbjct: 568 HFCKQGKISSAFRVLKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISP 627

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           ++ T+N  +  LC+  K+++A+ LL+ M+ + + PN  +F  L++ FC     + A+E+F
Sbjct: 628 NICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFKYLIEAFCKVPDFDMAQEVF 687

Query: 382 VSMESM-GCKHTVFS 395
            +  S+ G K  ++S
Sbjct: 688 ETAVSICGQKEGLYS 702



 Score =  147 bits (371), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 98/329 (29%), Positives = 152/329 (46%), Gaps = 34/329 (10%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +FD M      P   T F +L     K    D  L L   + S G+ P+   YN +++ F
Sbjct: 169 LFDEMPEKGCKPNEFT-FGILVRGYCKAGLTDKGLELLNAMESFGVLPNKVIYNTIVSSF 227

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA---FGC- 208
           C+ GR      ++ ++      PD V F S I  LC E ++++A+ +F+ ++     G  
Sbjct: 228 CREGRNDDSEKMVEKMREEGLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLP 287

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGN------------------GKF---GV 247
           +PN ITY+ ++ G C+ G    A  LFE +   +                  GKF     
Sbjct: 288 RPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAET 347

Query: 248 VCK--------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
           V K        P+  +Y  ++DGLCK G +  AK +   MK   + PD VTY  L+HG+C
Sbjct: 348 VLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNGVCPDAVTYGCLLHGYC 407

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                + A  LL EMM     P+  T N+++  L K G++ EA  LL  M  +G   +T 
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISEAEELLRKMNEKGYGLDTV 467

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           T + ++DG C +G ++ A E+   M   G
Sbjct: 468 TCNIIVDGLCGSGELDKAIEIVKGMRVHG 496



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/325 (27%), Positives = 150/325 (46%), Gaps = 51/325 (15%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD----LYTYNILINCFCKMGRVSHGF 162
           L+S   +    AK+ H D     F+ + S   FP+    +Y YN+L+    K  RV    
Sbjct: 75  LSSLLSVVSIFAKSNHIDKAFPQFQLVRSR--FPENKPSVYLYNLLLESCIKERRVEFVS 132

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +   ++     P    F  LI+ LC  S +  A  LF ++   GCKPN  T+  L+ G 
Sbjct: 133 WLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEMPEKGCKPNEFTFGILVRGY 192

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G T   L L   M +    FGV+  PN V Y TI+   C+EG  D ++++  +M+++
Sbjct: 193 CKAGLTDKGLELLNAMES----FGVL--PNKVIYNTIVSSFCREGRNDDSEKMVEKMREE 246

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEM-MDQGV---QPDVVTFNVIMDELCK--- 335
            + PD+VT+NS I   C      +A+ +  +M +D+ +   +P+ +T+N+++   CK   
Sbjct: 247 GLVPDIVTFNSRISALCKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGL 306

Query: 336 --------------------------------NGKMDEASRLLELMILRGVNPNTSTFST 363
                                           +GK  EA  +L+ M  +G+ P+  +++ 
Sbjct: 307 LEDAKTLFESIRENDDLASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNI 366

Query: 364 LMDGFCLTGRVNHAKELFVSMESMG 388
           LMDG C  G ++ AK +   M+  G
Sbjct: 367 LMDGLCKLGMLSDAKTIVGLMKRNG 391



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 77/275 (28%), Positives = 127/275 (46%), Gaps = 10/275 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +++ L   L K   +    +LF  +    L PD   YNI I+ FCK G++S  F V
Sbjct: 522 PDLITYSTLLNGLCKAGRFAEAKNLFAEMMGEKLQPDSVAYNIFIHHFCKQGKISSAFRV 581

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + +         + SLI GL  +++I E   L  ++K  G  PN+ TY+T I  LC 
Sbjct: 582 LKDMEKKGCHKSLETYNSLILGLGIKNQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCE 641

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A NL +EM   N        PN  ++  +I+  CK    D A+E+F +      
Sbjct: 642 GEKVEDATNLLDEMMQKN------IAPNVFSFKYLIEAFCKVPDFDMAQEVF-ETAVSIC 694

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
                 Y+ + +    A    +A  LL  ++D+G +     +  +++ LCK  +++ AS 
Sbjct: 695 GQKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFELGTFLYKDLVESLCKKDELEVASG 754

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +L  MI RG   + +    ++DG    G++ + KE
Sbjct: 755 ILHKMIDRGYGFDPAALMPVIDGL---GKMGNKKE 786



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 102/256 (39%), Gaps = 18/256 (7%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +   F+   CK   QG I++     AF +   M   +     L ++N L   L    
Sbjct: 558 DSVAYNIFIHHFCK---QGKISS-----AFRVLKDM-EKKGCHKSLETYNSLILGLGIKN 608

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
               +  L   +   G+ P++ TYN  I   C+  +V     +L  +++    P+  +F 
Sbjct: 609 QIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSFK 668

Query: 182 SLIKGLCAESRIMEAAALF-TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN 240
            LI+  C       A  +F T +   G K  +  YS + N L   G  + A  L E + +
Sbjct: 669 YLIEAFCKVPDFDMAQEVFETAVSICGQKEGL--YSLMFNELLAAGQLLKATELLEAVLD 726

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
              + G      T  Y  +++ LCK+  ++ A  +  +M D+    D      +I G   
Sbjct: 727 RGFELG------TFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGK 780

Query: 301 ANDWNEANCLLIEMMD 316
             +  EAN    +MM+
Sbjct: 781 MGNKKEANSFADKMME 796



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 44/77 (57%)

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P V  +N++++   K  +++  S L + M+L G+ P T TF+ L+   C +  V+ A+E
Sbjct: 109 KPSVYLYNLLLESCIKERRVEFVSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARE 168

Query: 380 LFVSMESMGCKHTVFSY 396
           LF  M   GCK   F++
Sbjct: 169 LFDEMPEKGCKPNEFTF 185


>gi|449443903|ref|XP_004139715.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
 gi|449475521|ref|XP_004154479.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
           mitochondrial-like [Cucumis sativus]
          Length = 660

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/379 (29%), Positives = 163/379 (43%), Gaps = 61/379 (16%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFD--YMLNMRPSPPPLTSFNLLFGCLAK 119
           D  +L Q + + C+S           N A+ I D   MLN      P    N L   L K
Sbjct: 116 DTIALTQLISKLCRSG--------NTNLAWNILDNLMMLNGLKDAAPC---NALLTGLGK 164

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI------LRSCF 173
            + +  +  L +++    + P + T+ ILIN  CK  R+     V  ++       +   
Sbjct: 165 AREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKEETKVFV 224

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALN 233
            PD + + +LI GLC   R  EA  L  K+++  C P   T++ LING CR+G   VA  
Sbjct: 225 APDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGEIEVAHK 284

Query: 234 LFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           LF EM N         +PN +T  T++DG+CK   +  A E F  M+ K +  + VTY  
Sbjct: 285 LFNEMENAQ------IEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTV 338

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVT---------------------------- 325
            I+ FC  N+ N+A   L EM   G  PD V                             
Sbjct: 339 FINAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAG 398

Query: 326 -------FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
                  +NV++ E CK  K+D A   L  M L GV P++ T++TL+  F   G    A 
Sbjct: 399 FCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAH 458

Query: 379 ELFVSM-ESMGCKHTVFSY 396
           +    M E  G   TVF+Y
Sbjct: 459 KFMKKMTEEEGLSPTVFTY 477



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 78/266 (29%), Positives = 130/266 (48%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D +  L  +     +FPD      LI+  C+ G  +  + +L  ++      DA    +L
Sbjct: 99  DEIAGLVSKFGKHNIFPDTIALTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNAL 158

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG 243
           + GL       +   L  K+K    +P VIT+  LIN LC+      AL +FE+M     
Sbjct: 159 LTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGILINHLCKFRRIDDALEVFEKMKGEKE 218

Query: 244 KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAND 303
           +  V   P+T+ Y T+IDGLCK G  ++A  L  +M+     P   T+N LI+G+C + +
Sbjct: 219 ETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTTATFNCLINGYCRSGE 278

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
              A+ L  EM +  ++P+V+T N ++D +CK+ ++  A     +M  +G+  N  T++ 
Sbjct: 279 IEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTV 338

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGC 389
            ++ FC    +N A E    M   GC
Sbjct: 339 FINAFCNVNNMNKAMEFLDEMSKDGC 364



 Score =  130 bits (328), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 90/303 (29%), Positives = 151/303 (49%), Gaps = 10/303 (3%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F+ M N +  P  +T  N L   + K     T +  F+ +   GL  +  TY + I
Sbjct: 282 AHKLFNEMENAQIEPNVIT-LNTLVDGMCKHNRISTAVEFFRVMQQKGLKGNNVTYTVFI 340

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N FC +  ++     L  + +    PDAV + +LI GL    R+ +A+++ +KLK  G  
Sbjct: 341 NAFCNVNNMNKAMEFLDEMSKDGCFPDAVVYYTLICGLAQAGRLDDASSVVSKLKEAGFC 400

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            + + Y+ LI+  C+      A     EM       GV  KP++VTY T+I    K G  
Sbjct: 401 LDRVCYNVLISEFCKKNKLDRAQEWLNEMELA----GV--KPDSVTYNTLISYFSKIGNF 454

Query: 270 DKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEM--MDQGVQPDVVTF 326
             A +   +M +++ ++P V TY +LIH +C  N+ +EA  +  EM  +   V P+ V +
Sbjct: 455 KLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASKVPPNTVIY 514

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++D LCK  +++ A  LL+ M  RGV PNT+T++++         ++ A +L   M  
Sbjct: 515 NILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVE 574

Query: 387 MGC 389
             C
Sbjct: 575 QAC 577



 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 144/352 (40%), Gaps = 49/352 (13%)

Query: 88  NEAFCIFDYMLNMRPS-----PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           ++A  +F+ M   +        P    +N L   L K    +  L L  ++ S    P  
Sbjct: 204 DDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGKMRSDQCAPTT 263

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T+N LIN +C+ G +     +   +  +   P+ +   +L+ G+C  +RI  A   F  
Sbjct: 264 ATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNRISTAVEFFRV 323

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           ++  G K N +TY+  IN  C   +   A+   +EM+         C P+ V Y T+I G
Sbjct: 324 MQQKGLKGNNVTYTVFINAFCNVNNMNKAMEFLDEMSKDG------CFPDAVVYYTLICG 377

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L + G +D A  +  ++K+     D V YN LI  FC  N  + A   L EM   GV+PD
Sbjct: 378 LAQAGRLDDASSVVSKLKEAGFCLDRVCYNVLISEFCKKNKLDRAQEWLNEMELAGVKPD 437

Query: 323 VVTFNVIMD------------------------------------ELCKNGKMDEASRLL 346
            VT+N ++                                       C N  +DEA ++ 
Sbjct: 438 SVTYNTLISYFSKIGNFKLAHKFMKKMTEEEGLSPTVFTYGALIHAYCLNNNIDEAIKIF 497

Query: 347 ELM--ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + M  +   V PNT  ++ L+D  C   +VN A  L   M+  G      +Y
Sbjct: 498 KEMNNVASKVPPNTVIYNILIDSLCKQTQVNFALSLLDDMKFRGVMPNTTTY 549



 Score =  125 bits (314), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/323 (28%), Positives = 147/323 (45%), Gaps = 45/323 (13%)

Query: 117 LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL--RSCFT 174
           L +    D  L+ F  L+S     +    N +IN   K GRV +   VL  +L   S F 
Sbjct: 16  LGRIGMVDEALAAFSTLDSHA--KNTNVRNEIINLLLKSGRVDNAMNVLDEMLLPESEFR 73

Query: 175 PD----AVAFTSLIK--GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
           P+     + F +L+K  GL    +  E A L +K       P+ I  + LI+ LCR+G+T
Sbjct: 74  PNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIALTQLISKLCRSGNT 133

Query: 229 IVALNLFEEMANGNG------------------KFGVV-----------CKPNTVTYTTI 259
            +A N+ + +   NG                  +FG +            +P  +T+  +
Sbjct: 134 NLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMKDMNIQPTVITFGIL 193

Query: 260 IDGLCKEGFVDKAKELFLQMKDKN------INPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           I+ LCK   +D A E+F +MK +       + PD + YN+LI G C      EA CL+ +
Sbjct: 194 INHLCKFRRIDDALEVFEKMKGEKEETKVFVAPDTIMYNTLIDGLCKVGRQEEALCLMGK 253

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M      P   TFN +++  C++G+++ A +L   M    + PN  T +TL+DG C   R
Sbjct: 254 MRSDQCAPTTATFNCLINGYCRSGEIEVAHKLFNEMENAQIEPNVITLNTLVDGMCKHNR 313

Query: 374 VNHAKELFVSMESMGCKHTVFSY 396
           ++ A E F  M+  G K    +Y
Sbjct: 314 ISTAVEFFRVMQQKGLKGNNVTY 336



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 114/253 (45%), Gaps = 6/253 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N+A    D M      P  +  + L+ G LA+    D   S+  +L   G   D   YN+
Sbjct: 350 NKAMEFLDEMSKDGCFPDAVVYYTLICG-LAQAGRLDDASSVVSKLKEAGFCLDRVCYNV 408

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAF 206
           LI+ FCK  ++      L  +  +   PD+V + +LI           A     K+ +  
Sbjct: 409 LISEFCKKNKLDRAQEWLNEMELAGVKPDSVTYNTLISYFSKIGNFKLAHKFMKKMTEEE 468

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  P V TY  LI+  C   +   A+ +F+EM N   K      PNTV Y  +ID LCK+
Sbjct: 469 GLSPTVFTYGALIHAYCLNNNIDEAIKIFKEMNNVASK----VPPNTVIYNILIDSLCKQ 524

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
             V+ A  L   MK + + P+  TYNS+       N  ++A  L+  M++Q   PD +T 
Sbjct: 525 TQVNFALSLLDDMKFRGVMPNTTTYNSIFKALRDKNWLDKAFKLMDRMVEQACNPDYITM 584

Query: 327 NVIMDELCKNGKM 339
            ++ + L   G++
Sbjct: 585 EILTEWLSAVGEI 597



 Score = 74.7 bits (182), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 113/269 (42%), Gaps = 57/269 (21%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A +   L++ L     + EA A F+ L +     NV   + +IN L ++G    A+N+ +
Sbjct: 6   AQSSVHLLRRLGRIGMVDEALAAFSTLDSHAKNTNV--RNEIINLLLKSGRVDNAMNVLD 63

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCK-EGFVDKAKE-----LFLQMKDKNINPDVVT 290
           EM     +F    +PN  T   + + L K +G   + KE     L  +    NI PD + 
Sbjct: 64  EMLLPESEF----RPNDKTAGIVFNNLLKIDGLEGRVKEDEIAGLVSKFGKHNIFPDTIA 119

Query: 291 YNSLIHGFCYAND----WN-------------------------------EANCLLIEMM 315
              LI   C + +    WN                               + N L+ +M 
Sbjct: 120 LTQLISKLCRSGNTNLAWNILDNLMMLNGLKDAAPCNALLTGLGKAREFGKMNLLMRKMK 179

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG--------VNPNTSTFSTLMDG 367
           D  +QP V+TF ++++ LCK  ++D+A  + E M  +G        V P+T  ++TL+DG
Sbjct: 180 DMNIQPTVITFGILINHLCKFRRIDDALEVFEKM--KGEKEETKVFVAPDTIMYNTLIDG 237

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            C  GR   A  L   M S  C  T  ++
Sbjct: 238 LCKVGRQEEALCLMGKMRSDQCAPTTATF 266


>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
 gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
 gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
          Length = 991

 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 151/316 (47%), Gaps = 26/316 (8%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  F  L   L K         L   +++ GL P++ TY  +I+ +CK G+V     VL 
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    P+A  + SL+ GL  + ++ +A AL TK++  G  PNVITY+TL+ G C   
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 227 HTIVALNLFEEMANGNGK-----FGVV----CKPN-----------------TVTYTTII 260
               A  LFE M     K     + V+    CK                    V YTT+I
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLI 606

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG  K G  D A  L  +M D+   PD  TY+ L+H  C     NEA  +L +M  +G++
Sbjct: 607 DGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK 666

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             +  + +++DE+ + GK D A R+   M   G  P+ +T++  ++ +C  GR+  A++L
Sbjct: 667 CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDL 726

Query: 381 FVSMESMGCKHTVFSY 396
            + ME  G    V +Y
Sbjct: 727 ILKMEREGVAPDVVTY 742



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CKS   GD        A  +FD M      P  +T +N +    +K    +  L + + +
Sbjct: 299 CKSGRVGD--------ARLLFDAMPQNGVVPSVMT-YNAMIVGYSKLGRMNDALKIKELM 349

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
              G  PD +TYN LI   C   +      +L   ++  FTP  V FT+LI G C   + 
Sbjct: 350 EKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 408

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            +A  +  K+ +  CK ++  +  LIN L +      A  L  E++      G+V  PN 
Sbjct: 409 DDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN----GLV--PNV 462

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           +TYT+IIDG CK G VD A E+   M+     P+  TYNSL++G       ++A  LL +
Sbjct: 463 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTK 522

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M   G+ P+V+T+  ++   C     D A RL E+M   G+ P+   ++ L D  C  GR
Sbjct: 523 MQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 582

Query: 374 VNHAKELFV 382
              A    V
Sbjct: 583 AEEAYSFIV 591



 Score =  141 bits (355), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 65/351 (18%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH--------- 160
           +N     LA+    + +  ++ +L   GL PD  TYN +I  +CK G ++          
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 210

Query: 161 ----------------GFVVLGRILRSCF----------TPDAVAFTSLIKGLCAESRIM 194
                           G+   G + ++C+            +  ++T LI+GLC    + 
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 270

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-------------- 240
           +A  LF  +K  GC PNV  ++ LI+GLC++G    A  LF+ M                
Sbjct: 271 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330

Query: 241 -GNGKFGVV--------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            G  K G +              C P+  TY T+I GLC +   ++A+EL      +   
Sbjct: 331 VGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFT 389

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P VVT+ +LI+G+C A  +++A  +  +MM    + D+  F  +++ L K  ++ EA  L
Sbjct: 390 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 449

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L  +   G+ PN  T+++++DG+C +G+V+ A E+   ME  GC+   ++Y
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 500



 Score =  132 bits (333), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 151/318 (47%), Gaps = 8/318 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A    +A  +F  M+      P + +F  L   L K+        LF  +   G+
Sbjct: 261 QGLCDAKCVRKALVLF-LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV 319

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + TYN +I  + K+GR++    +   + ++   PD   + +LI GLC + +  EA  
Sbjct: 320 VPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEE 378

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L       G  P V+T++ LING C       AL +  +M +        CK +   +  
Sbjct: 379 LLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK------CKLDLQVFGK 432

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+ L K+  + +AKEL  ++    + P+V+TY S+I G+C +   + A  +L  M   G
Sbjct: 433 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDG 492

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            QP+  T+N +M  L K+ K+ +A  LL  M   G+ PN  T++TL+ G C     ++A 
Sbjct: 493 CQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAF 552

Query: 379 ELFVSMESMGCKHTVFSY 396
            LF  ME  G K    +Y
Sbjct: 553 RLFEMMEQNGLKPDEHAY 570



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L         +D    LF+ +   GL PD + Y +L +  CK GR    +  
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+R       V +T+LI G         AA L  ++   GC P+  TYS L++ LC+
Sbjct: 590 ---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 646

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL + ++M+      G+ C      YT +ID + +EG  D AK ++ +M     
Sbjct: 647 QKRLNEALPILDQMS----LRGIKC--TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA-- 342
            P   TY   I+ +C      +A  L+++M  +GV PDVVT+N+++D     G +D A  
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFS 760

Query: 343 -------------------------------------------------SRLLELMILRG 353
                                                             +LLE M+  G
Sbjct: 761 TLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHG 820

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHA 377
           +NP  +T+S+L+ GFC  GR+  A
Sbjct: 821 LNPTVTTYSSLIAGFCKAGRLEEA 844



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 7/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+ +L   L   K     L LF  +   G  P++  +  LI+  CK GRV    ++   +
Sbjct: 255 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++   P  + + ++I G     R+ +A  +   ++  GC P+  TY+TLI GLC     
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTE 374

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                  EE+ N   K G    P  VT+T +I+G C     D A  +  +M       D+
Sbjct: 375 EA-----EELLNNAVKEGFT--PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 427

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             +  LI+     +   EA  LL E+   G+ P+V+T+  I+D  CK+GK+D A  +L++
Sbjct: 428 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 487

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G  PN  T+++LM G     +++ A  L   M+  G    V +Y
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITY 535



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 9/300 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+      P   ++N L   L K K     ++L  ++   G+ P++ TY  L+   C   
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
              + F +   + ++   PD  A+  L   LC   R  EA +   +    G     + Y+
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK---GVALTKVYYT 603

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLI+G  + G+T  A  L E M +        C P++ TY+ ++  LCK+  +++A  + 
Sbjct: 604 TLIDGFSKAGNTDFAATLIERMIDEG------CTPDSYTYSVLLHALCKQKRLNEALPIL 657

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            QM  + I   +  Y  LI         + A  +  EM   G +P   T+ V ++  CK 
Sbjct: 658 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 717

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++++A  L+  M   GV P+  T++ L+DG    G ++ A      M    C+   ++Y
Sbjct: 718 GRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTY 777



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++++L   L K K  +  L +  +++  G+   ++ Y ILI+   + G+  H   +
Sbjct: 632 PDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRM 691

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S   P A  +T  I   C E R+ +A  L  K++  G  P+V+TY+ LI+G   
Sbjct: 692 YNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 751

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF---------------- 268
            G+   A +  + M       G  C+PN  TY  ++  L K                   
Sbjct: 752 MGYIDRAFSTLKRMV------GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 805

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D   +L  +M    +NP V TY+SLI GFC A    EA  LL  M  +G+ P+   + +
Sbjct: 806 LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTL 865

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C     ++A   + +M   G  P   ++  L+ G C  G     K LF  +  +G
Sbjct: 866 LIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925

Query: 389 CKHTVFSY 396
             H   ++
Sbjct: 926 YNHDEVAW 933



 Score =  116 bits (290), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            +   +R  S  L      YN  +    +     +   V  ++++    PD V + ++IK
Sbjct: 132 AIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIK 191

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
             C E  +  A   F  L   G +P   T + L+ G CRTG    A  LF  M       
Sbjct: 192 SYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPL----- 246

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
            + C+ N  +YT +I GLC    V KA  LFL MK    +P+V  +  LI G C +    
Sbjct: 247 -MGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVG 305

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A  L   M   GV P V+T+N ++    K G+M++A ++ ELM   G +P+  T++TL+
Sbjct: 306 DARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI 365

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G C   +   A+EL  +    G   TV ++
Sbjct: 366 YGLC-DQKTEEAEELLNNAVKEGFTPTVVTF 395



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 15/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  I D M ++R     + ++ +L   + +   +D    ++  + S+G  P   TY +
Sbjct: 651 NEALPILDQM-SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTV 709

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            IN +CK GR+     ++ ++ R    PD V +  LI G      I  A +   ++    
Sbjct: 710 FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGAS 769

Query: 208 CKPNVITYSTLINGLCRTG------------HTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           C+PN  TY  L+  L +                ++ L++  ++     K G+   P   T
Sbjct: 770 CEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL--NPTVTT 827

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+++I G CK G +++A  L   M  K ++P+   Y  LI   C    + +A   +  M 
Sbjct: 828 YSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMS 887

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           + G QP + ++ +++  LC  G  ++   L   ++  G N +   +  L DG    G V+
Sbjct: 888 ECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVD 947

Query: 376 HAKELFVSMESMGC 389
              ++   ME   C
Sbjct: 948 ICFQMLSIMEKRYC 961



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 22/274 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++ +      K    +    L  ++   G+ PD+ TYNILI+    MG +   F  
Sbjct: 702 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 761

Query: 165 LGRILRSCFTPDAVAF----TSLIKGLCAESRIMEAAALFT------------KLKAFGC 208
           L R++ +   P+   +      L+KG  A  R ++ + ++             ++   G 
Sbjct: 762 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL 821

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V TYS+LI G C+ G    A  L + M  G G       PN   YT +I   C   F
Sbjct: 822 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMC-GKG-----LSPNEDIYTLLIKCCCDTKF 875

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA      M +    P + +Y  L+ G C   D+ +   L  ++++ G   D V + +
Sbjct: 876 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI 935

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           + D L K G +D   ++L +M  R    ++ T++
Sbjct: 936 LNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYA 969


>gi|357473969|ref|XP_003607269.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
 gi|355508324|gb|AES89466.1| UDP-glucoronosyl/UDP-glucosyl transferase family protein-like
           protein [Medicago truncatula]
          Length = 970

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 93/292 (31%), Positives = 154/292 (52%), Gaps = 7/292 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++  C+ + M+ +   P       L+ G L K  + D+   L  +L   G  P+L+ YN 
Sbjct: 305 DDGICLMNEMVELGFVPTEAAVSGLVDG-LRKKGNIDSAYDLVVKLGRFGFLPNLFVYNA 363

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK   +    ++   +       + V ++ LI   C    +  A + F ++   G
Sbjct: 364 LINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDG 423

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +  +  Y++LING C+ G    A  L+ +M N         +P   T+TT+I G CK+ 
Sbjct: 424 IRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEG------LEPTATTFTTLISGYCKDL 477

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+KA +L+ +M +K I P V T+ +LI+G C  N+  EA+ L  EM+++ ++P  VT+N
Sbjct: 478 QVEKAFKLYREMNEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYN 537

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           V+++  CK   MD+A  LLE M+  G+ P+T T+  L+ G C TGRV+ AK+
Sbjct: 538 VMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKD 589



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/273 (30%), Positives = 137/273 (50%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L K +  D    L+K ++S  L  +  TY+ILI+ FCK G +      
Sbjct: 356 PNLFVYNALINALCKGEDLDKAELLYKNMHSMNLPLNDVTYSILIDSFCKRGMLDVAESY 415

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            GR++          + SLI G C    +  A  L+TK+   G +P   T++TLI+G C+
Sbjct: 416 FGRMIEDGIRETIYPYNSLINGHCKFGDLSAAEFLYTKMINEGLEPTATTFTTLISGYCK 475

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L+ EM            P+  T+T +I GLC    + +A +LF +M ++ I
Sbjct: 476 DLQVEKAFKLYREMNEKE------IAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKI 529

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  VTYN +I G+C A++ ++A  LL +M+  G+ PD  T+  ++  LC  G++  A  
Sbjct: 530 KPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKD 589

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            ++ +  + +  N   +S L+ G+C  GR+  A
Sbjct: 590 FIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEA 622



 Score =  136 bits (343), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 150/352 (42%), Gaps = 66/352 (18%)

Query: 99  NMRPSPPPL--TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           NM     PL   ++++L     K    D   S F R+   G+   +Y YN LIN  CK G
Sbjct: 383 NMHSMNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFG 442

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
            +S    +  +++     P A  FT+LI G C + ++ +A  L+ ++      P+V T++
Sbjct: 443 DLSAAEFLYTKMINEGLEPTATTFTTLISGYCKDLQVEKAFKLYREMNEKEIAPSVYTFT 502

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGK-----FGVV----CK----------------- 250
            LI GLC T     A  LF+EM     K     + V+    CK                 
Sbjct: 503 ALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVMIEGYCKAHNMDKAFELLEDMLHN 562

Query: 251 ---PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              P+T TY  +I GLC  G V  AK+    +  KN+  + + Y++L+HG+C      EA
Sbjct: 563 GLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNLKLNEMCYSALLHGYCGQGRLTEA 622

Query: 308 ---NC--------------------------------LLIEMMDQGVQPDVVTFNVIMDE 332
              +C                                LL +M DQG++PD V +  ++D 
Sbjct: 623 LSASCEMIQRGINMDLVCHAVLIDGAMKQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDA 682

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
             K G   ++   L+LM+     PN  T++  M+G C  G ++ A  LF  M
Sbjct: 683 YSKEGSFKKSGECLDLMVTEKCFPNVVTYTAFMNGLCKVGEIDRAGHLFEKM 734



 Score =  134 bits (337), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 87/282 (30%), Positives = 136/282 (48%), Gaps = 18/282 (6%)

Query: 119 KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDA 177
           K +    +  L K++   GL PD   Y  +I+ + K G        L  ++   CF P+ 
Sbjct: 650 KQQDMKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCF-PNV 708

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEE 237
           V +T+ + GLC    I  A  LF K+      PN +TY   ++ L + G+   A +L  E
Sbjct: 709 VTYTAFMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHE 768

Query: 238 MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
           M  G          NT TY  +I G CK G + +A ++  +M +  I PD +TY+++I+ 
Sbjct: 769 MLKG-------LLANTATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYE 821

Query: 298 FCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP- 356
            C + D   A  L   M+ +GV+PD V FN+++   C NG +D+A  L   M+ RG+ P 
Sbjct: 822 HCRSGDVGAAVELWDTMLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPR 881

Query: 357 --------NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
                   +    + LM G C+TG V+ A  L+ SM +   K
Sbjct: 882 QILQLQKRDLGVCNFLMHGGCVTGEVDTALRLYHSMLTRAVK 923



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 82/296 (27%), Positives = 133/296 (44%), Gaps = 7/296 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +AF ++  M N +   P + +F  L   L  T        LF  +    + P   TYN++
Sbjct: 481 KAFKLYREM-NEKEIAPSVYTFTALIYGLCSTNEMAEASKLFDEMVERKIKPTEVTYNVM 539

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  +CK   +   F +L  +L +   PD   +  LI GLC+  R+  A      L     
Sbjct: 540 IEGYCKAHNMDKAFELLEDMLHNGLVPDTYTYRPLISGLCSTGRVSAAKDFIDDLHKKNL 599

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K N + YS L++G C  G    AL+   EM        +VC      +  +IDG  K+  
Sbjct: 600 KLNEMCYSALLHGYCGQGRLTEALSASCEMIQRGINMDLVC------HAVLIDGAMKQQD 653

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           + +   L  +M D+ + PD V Y S+I  +     + ++   L  M+ +   P+VVT+  
Sbjct: 654 MKRLFGLLKKMYDQGLRPDSVIYTSMIDAYSKEGSFKKSGECLDLMVTEKCFPNVVTYTA 713

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            M+ LCK G++D A  L E M+   ++PN+ T+   +D     G +  A +L   M
Sbjct: 714 FMNGLCKVGEIDRAGHLFEKMLTANISPNSVTYGCFLDSLTKEGNMKEATDLHHEM 769



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/249 (26%), Positives = 118/249 (47%), Gaps = 6/249 (2%)

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
           F     ++ L++ + +  RV    VVL  +L +   P+    ++++ GL    + +    
Sbjct: 145 FSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFILVWE 204

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           +F +    G KP+  T S +I  LC       A      M +      +V      TY  
Sbjct: 205 VFDESVNAGVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIV------TYNV 258

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I GLCK G V +A E+   +++K +  DVVTY +L+ GFC    +++  CL+ EM++ G
Sbjct: 259 LIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELG 318

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
             P     + ++D L K G +D A  L+  +   G  PN   ++ L++  C    ++ A+
Sbjct: 319 FVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAE 378

Query: 379 ELFVSMESM 387
            L+ +M SM
Sbjct: 379 LLYKNMHSM 387



 Score = 94.7 bits (234), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 142/320 (44%), Gaps = 42/320 (13%)

Query: 112 LLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRS 171
           L+   L  T+ +D V+ L   L +T L P++ T + ++N   ++ +    + V    + +
Sbjct: 154 LVHSYLQNTRVFDAVVVLRLMLGNT-LLPEVRTLSAILNGLLRIRKFILVWEVFDESVNA 212

Query: 172 CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA 231
              PD    +++I+ LC       A      +++     +++TY+ LI+GLC+ G  + A
Sbjct: 213 GVKPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIVTYNVLIHGLCKGGGVLEA 272

Query: 232 LNLFEEMANGNGKFGVVCKPNTVTYTTI-------------------------------- 259
           L + + +           K + VTY T+                                
Sbjct: 273 LEVRKSLREKG------LKEDVVTYCTLVLGFCRVQQFDDGICLMNEMVELGFVPTEAAV 326

Query: 260 ---IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
              +DGL K+G +D A +L +++      P++  YN+LI+  C   D ++A  L   M  
Sbjct: 327 SGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVYNALINALCKGEDLDKAELLYKNMHS 386

Query: 317 QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
             +  + VT+++++D  CK G +D A      MI  G+      +++L++G C  G ++ 
Sbjct: 387 MNLPLNDVTYSILIDSFCKRGMLDVAESYFGRMIEDGIRETIYPYNSLINGHCKFGDLSA 446

Query: 377 AKELFVSMESMGCKHTVFSY 396
           A+ L+  M + G + T  ++
Sbjct: 447 AEFLYTKMINEGLEPTATTF 466



 Score = 93.6 bits (231), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 105/227 (46%), Gaps = 6/227 (2%)

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
           + C     + F  L+      +R+ +A  +   +      P V T S ++NGL R    I
Sbjct: 141 KQCKFSSTLGFDFLVHSYLQNTRVFDAVVVLRLMLGNTLLPEVRTLSAILNGLLRIRKFI 200

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
           +   +F+E  N     GV  KP+  T + +I  LC+     +AKE  L M+    +  +V
Sbjct: 201 LVWEVFDESVNA----GV--KPDPYTCSAVIRSLCELKDFCRAKEKILWMESNRFDLSIV 254

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN LIHG C      EA  +   + ++G++ DVVT+  ++   C+  + D+   L+  M
Sbjct: 255 TYNVLIHGLCKGGGVLEALEVRKSLREKGLKEDVVTYCTLVLGFCRVQQFDDGICLMNEM 314

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  G  P  +  S L+DG    G ++ A +L V +   G    +F Y
Sbjct: 315 VELGFVPTEAAVSGLVDGLRKKGNIDSAYDLVVKLGRFGFLPNLFVY 361



 Score = 58.5 bits (140), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 59/140 (42%), Gaps = 9/140 (6%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N+L     K         +   +   G+FPD  TY+ +I   C+ G V     +   
Sbjct: 778 ATYNILIRGFCKLGRLIEATKVLSEMTENGIFPDCITYSTIIYEHCRSGDVGAAVELWDT 837

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY---------STL 218
           +LR    PD+VAF  LI G C    + +A  L   + + G KP  I           + L
Sbjct: 838 MLRKGVEPDSVAFNLLIYGCCVNGALDKAFELRNDMLSRGLKPRQILQLQKRDLGVCNFL 897

Query: 219 INGLCRTGHTIVALNLFEEM 238
           ++G C TG    AL L+  M
Sbjct: 898 MHGGCVTGEVDTALRLYHSM 917


>gi|5738362|emb|CAB52870.1| putative protein [Arabidopsis thaliana]
 gi|7268785|emb|CAB78991.1| putative protein [Arabidopsis thaliana]
          Length = 1302

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 14/300 (4%)

Query: 93   IFDYMLNMRPSPPPLTSFNLL-FGCL--AKTKHYDTVLS-LFKRLNSTGLFPDLYTYNIL 148
            +FD M ++R   P  +S+ L+  GC    K +  D  L+ + +R    G  PD  T  ++
Sbjct: 805  VFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR----GFIPDNATCTLI 859

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            +   C+ G V+       +++   F P+ + FTSLI GLC +  I +A  +  ++   G 
Sbjct: 860  LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 919

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            KPNV T++ LI+GLC+ G T  A  LF ++   +       KPN  TYT++I G CKE  
Sbjct: 920  KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----TYKPNVHTYTSMIGGYCKEDK 974

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +++A+ LF +MK++ + P+V TY +LI+G C A  +  A  L+  M D+G  P++ T+N 
Sbjct: 975  LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 1034

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +D LCK  +  EA  LL      G+  +  T++ L+   C    +N A   F  M   G
Sbjct: 1035 AIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 1094



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 97/310 (31%), Positives = 153/310 (49%), Gaps = 8/310 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            N A   F  M+++    P L +F  L   L K         + + +   G  P++YT+  
Sbjct: 870  NRAIWYFRKMIDL-GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 928

Query: 148  LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI+  CK G     F +  +++RS  + P+   +TS+I G C E ++  A  LF+++K  
Sbjct: 929  LIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 988

Query: 207  GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            G  PNV TY+TLING C+ G    A     E+ N  G  G +  PN  TY   ID LCK+
Sbjct: 989  GLFPNVNTYTTLINGHCKAGSFGRAY----ELMNLMGDEGFM--PNIYTYNAAIDSLCKK 1042

Query: 267  GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
                +A EL  +     +  D VTY  LI   C  ND N+A      M   G + D+   
Sbjct: 1043 SRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLN 1102

Query: 327  NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            N+++   C+  KM E+ RL +L++  G+ P   T+++++  +C  G ++ A + F +M+ 
Sbjct: 1103 NILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKR 1162

Query: 387  MGCKHTVFSY 396
             GC    F+Y
Sbjct: 1163 HGCVPDSFTY 1172



 Score =  155 bits (393), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 155/314 (49%), Gaps = 15/314 (4%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            NEA  +   M N   +P  +T  N +     +    +   ++F  ++  G+ PD  +Y +
Sbjct: 765  NEAVGMVMDMQNQGLTPSSIT-MNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKL 823

Query: 148  L-INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            + I CF + G++      L  +++  F PD    T ++  LC    +  A   F K+   
Sbjct: 824  MVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDL 882

Query: 207  GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            G KPN+I +++LI+GLC+ G    A  + EEM   NG      KPN  T+T +IDGLCK 
Sbjct: 883  GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG-----WKPNVYTHTALIDGLCKR 936

Query: 267  GFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G+ +KA  LFL++ +     P+V TY S+I G+C  +  N A  L   M +QG+ P+V T
Sbjct: 937  GWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 996

Query: 326  FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF---- 381
            +  +++  CK G    A  L+ LM   G  PN  T++  +D  C   R   A EL     
Sbjct: 997  YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 1056

Query: 382  -VSMESMGCKHTVF 394
               +E+ G  +T+ 
Sbjct: 1057 SCGLEADGVTYTIL 1070



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++  F ++GR++    ++  +     TP ++    +++       I  A  +F ++   G
Sbjct: 754 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 813

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  ++ G  R G    A    +    G  + G +  P+  T T I+  LC+ G
Sbjct: 814 VVPDSSSYKLMVIGCFRDGKIQEA----DRWLTGMIQRGFI--PDNATCTLILTALCENG 867

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A   F +M D    P+++ + SLI G C      +A  +L EM+  G +P+V T  
Sbjct: 868 LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 927

Query: 328 VIMDELCKNGKMDEASRL-LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++D LCK G  ++A RL L+L+      PN  T+++++ G+C   ++N A+ LF  M+ 
Sbjct: 928 ALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKE 987

Query: 387 MGCKHTVFSY 396
            G    V +Y
Sbjct: 988 QGLFPNVNTY 997



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 15/230 (6%)

Query: 182 SLIKGLCAESRIMEA------AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVA--LN 233
           +++  L +ES  M A      A  F K + F     V   S L NG  +  H ++   L 
Sbjct: 697 TVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLR 756

Query: 234 LFEEMANGNGKFGVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            F E+   N   G+V         P+++T   +++   + G ++ A+ +F +M  + + P
Sbjct: 757 NFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVP 816

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D  +Y  ++ G        EA+  L  M+ +G  PD  T  +I+  LC+NG ++ A    
Sbjct: 817 DSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYF 876

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             MI  G  PN   F++L+DG C  G +  A E+   M   G K  V+++
Sbjct: 877 RKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 926



 Score = 78.6 bits (192), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 103/247 (41%), Gaps = 12/247 (4%)

Query: 109  SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            ++ +L     K    +  L+ F R+N TG   D+   NILI  FC+  ++     +   +
Sbjct: 1066 TYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQLV 1125

Query: 169  LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +     P    +TS+I   C E  I  A   F  +K  GC P+  TY +LI+GLC+    
Sbjct: 1126 VSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMV 1185

Query: 229  IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL-FLQMKDKNINPD 287
              A  L+E M +          P  VT  T+    CK    D A  +  L+  DK +   
Sbjct: 1186 DEACKLYEAMIDRG------LSPPEVTRVTLAYEYCKRN--DSANAMILLEPLDKKLW-- 1235

Query: 288  VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
            + T  +L+   C       A     +++++    D VT         ++GK +  + L E
Sbjct: 1236 IRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLTE 1295

Query: 348  LMILRGV 354
              I RGV
Sbjct: 1296 -RISRGV 1301



 Score = 42.7 bits (99), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 32/134 (23%), Positives = 49/134 (36%), Gaps = 3/134 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P   ++  +  C  K    D  L  F  +   G  PD +TY  LI+  CK   V     +
Sbjct: 1132 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSMVDEACKL 1191

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               ++    +P  V   +L    C  +    A  L   L     K  + T  TL+  LC 
Sbjct: 1192 YEAMIDRGLSPPEVTRVTLAYEYCKRNDSANAMILLEPLDK---KLWIRTVRTLVRKLCS 1248

Query: 225  TGHTIVALNLFEEM 238
                 VA   F+++
Sbjct: 1249 EKKVGVAALFFQKL 1262


>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
          Length = 991

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 151/316 (47%), Gaps = 26/316 (8%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  F  L   L K         L   +++ GL P++ TY  +I+ +CK G+V     VL 
Sbjct: 427 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 486

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    P+A  + SL+ GL  + ++ +A AL TK++  G  PNVITY+TL+ G C   
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 227 HTIVALNLFEEMANGNGK-----FGVV----CKPN-----------------TVTYTTII 260
               A  LFE M     K     + V+    CK                    V YTT+I
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLI 606

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG  K G  D A  L  +M D+   PD  TY+ L+H  C     NEA  +L +M  +G++
Sbjct: 607 DGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK 666

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             +  + +++DE+ + GK D A R+   M   G  P+ +T++  ++ +C  GR+  A++L
Sbjct: 667 CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDL 726

Query: 381 FVSMESMGCKHTVFSY 396
            + ME  G    V +Y
Sbjct: 727 ILKMEREGVAPDVVTY 742



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CKS   GD        A  +FD M      P  +T +N +    +K    +  L + + +
Sbjct: 299 CKSGRVGD--------ARLLFDAMPQNGVVPSVMT-YNAMIVGYSKLGRMNDALKIKELM 349

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
              G  PD +TYN LI   C   +      +L   ++  FTP  V FT+LI G C   + 
Sbjct: 350 EKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 408

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            +A  +  K+ +  CK ++  +  LIN L +      A  L  E++      G+V  PN 
Sbjct: 409 DDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN----GLV--PNV 462

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           +TYT+IIDG CK G VD A E+   M+     P+  TYNSL++G       ++A  LL +
Sbjct: 463 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTK 522

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M   G+ P+V+T+  ++   C     D A RL E+M   G+ P+   ++ L D  C  GR
Sbjct: 523 MQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 582

Query: 374 VNHAKELFV 382
              A    V
Sbjct: 583 AEEAYSFIV 591



 Score =  143 bits (361), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 162/351 (46%), Gaps = 65/351 (18%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH--------- 160
           +N     LA+    + +  ++ +L   GL PD  TYN +I  +CK G ++          
Sbjct: 151 YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRCFRLLL 210

Query: 161 ----------------GFVVLGRILRSCF----------TPDAVAFTSLIKGLCAESRIM 194
                           G+   G + ++C+            +  ++T LI+GLC    + 
Sbjct: 211 EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCEAKCVR 270

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-------------- 240
           EA  LF  +K  GC PNV  ++ LI+GLC++G    A  LF+ M                
Sbjct: 271 EALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 330

Query: 241 -GNGKFGVV--------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            G  K G +              C P+  TY T+I GLC +   ++A+EL      +   
Sbjct: 331 VGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFT 389

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P VVT+ +LI+G+C A  +++A  +  +MM    + D+  F  +++ L K  ++ EA  L
Sbjct: 390 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 449

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L  +   G+ PN  T+++++DG+C +G+V+ A E+   ME  GC+   ++Y
Sbjct: 450 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 500



 Score =  134 bits (338), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/318 (29%), Positives = 151/318 (47%), Gaps = 8/318 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A    EA  +F  M+      P + +F  L   L K+        LF  +   G+
Sbjct: 261 QGLCEAKCVREALVLF-LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV 319

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + TYN +I  + K+GR++    +   + ++   PD   + +LI GLC + +  EA  
Sbjct: 320 VPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEE 378

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L       G  P V+T++ LING C       AL +  +M +        CK +   +  
Sbjct: 379 LLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK------CKLDLQVFGK 432

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+ L K+  + +AKEL  ++    + P+V+TY S+I G+C +   + A  +L  M   G
Sbjct: 433 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDG 492

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            QP+  T+N +M  L K+ K+ +A  LL  M   G+ PN  T++TL+ G C     ++A 
Sbjct: 493 CQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAF 552

Query: 379 ELFVSMESMGCKHTVFSY 396
            LF  ME  G K    +Y
Sbjct: 553 RLFEMMEQNGLKPDEHAY 570



 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L         +D    LF+ +   GL PD + Y +L +  CK GR    +  
Sbjct: 530 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 589

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+R       V +T+LI G         AA L  ++   GC P+  TYS L++ LC+
Sbjct: 590 ---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 646

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL + ++M+      G+ C      YT +ID + +EG  D AK ++ +M     
Sbjct: 647 QKRLNEALPILDQMS----LRGIKC--TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 700

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA-- 342
            P   TY   I+ +C      +A  L+++M  +GV PDVVT+N+++D     G +D A  
Sbjct: 701 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFS 760

Query: 343 -------------------------------------------------SRLLELMILRG 353
                                                             +LLE M+  G
Sbjct: 761 TLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHG 820

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHA 377
           +NP  +T+S+L+ GFC  GR+  A
Sbjct: 821 LNPTVTTYSSLIAGFCKAGRLEEA 844



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 135/288 (46%), Gaps = 7/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+ +L   L + K     L LF  +   G  P++  +  LI+  CK GRV    ++   +
Sbjct: 255 SYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 314

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++   P  + + ++I G     R+ +A  +   ++  GC P+  TY+TLI GLC     
Sbjct: 315 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTE 374

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                  EE+ N   K G    P  VT+T +I+G C     D A  +  +M       D+
Sbjct: 375 EA-----EELLNNAVKEGFT--PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 427

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             +  LI+     +   EA  LL E+   G+ P+V+T+  I+D  CK+GK+D A  +L++
Sbjct: 428 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 487

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G  PN  T+++LM G     +++ A  L   M+  G    V +Y
Sbjct: 488 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITY 535



 Score =  121 bits (303), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 9/300 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+      P   ++N L   L K K     ++L  ++   G+ P++ TY  L+   C   
Sbjct: 487 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 546

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
              + F +   + ++   PD  A+  L   LC   R  EA +   +    G     + Y+
Sbjct: 547 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK---GVALTKVYYT 603

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLI+G  + G+T  A  L E M +        C P++ TY+ ++  LCK+  +++A  + 
Sbjct: 604 TLIDGFSKAGNTDFAATLIERMIDEG------CTPDSYTYSVLLHALCKQKRLNEALPIL 657

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            QM  + I   +  Y  LI         + A  +  EM   G +P   T+ V ++  CK 
Sbjct: 658 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 717

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++++A  L+  M   GV P+  T++ L+DG    G ++ A      M    C+   ++Y
Sbjct: 718 GRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTY 777



 Score =  120 bits (302), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++++L   L K K  +  L +  +++  G+   ++ Y ILI+   + G+  H   +
Sbjct: 632 PDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRM 691

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S   P A  +T  I   C E R+ +A  L  K++  G  P+V+TY+ LI+G   
Sbjct: 692 YNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 751

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF---------------- 268
            G+   A +  + M       G  C+PN  TY  ++  L K                   
Sbjct: 752 MGYIDRAFSTLKRMV------GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 805

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D   +L  +M    +NP V TY+SLI GFC A    EA  LL  M  +G+ P+   + +
Sbjct: 806 LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTL 865

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C     ++A   + +M   G  P   ++  L+ G C  G     K LF  +  +G
Sbjct: 866 LIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 925

Query: 389 CKHTVFSY 396
             H   ++
Sbjct: 926 YNHDEVAW 933



 Score =  115 bits (287), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 79/271 (29%), Positives = 125/271 (46%), Gaps = 7/271 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            +   +R  S  L      YN  +    +     +   V  ++++    PD V + ++IK
Sbjct: 132 AIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIK 191

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
             C E  +  A   F  L   G +P   T + L+ G CRTG    A  LF  M       
Sbjct: 192 SYCKEGDLTTAHRCFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPL----- 246

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
            + C+ N  +YT +I GLC+   V +A  LFL MK    +P+V  +  LI G C +    
Sbjct: 247 -MGCQRNEYSYTILIQGLCEAKCVREALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVG 305

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A  L   M   GV P V+T+N ++    K G+M++A ++ ELM   G +P+  T++TL+
Sbjct: 306 DARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI 365

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G C   +   A+EL  +    G   TV ++
Sbjct: 366 YGLC-DQKTEEAEELLNNAVKEGFTPTVVTF 395



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 15/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  I D M ++R     + ++ +L   + +   +D    ++  + S+G  P   TY +
Sbjct: 651 NEALPILDQM-SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTV 709

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            IN +CK GR+     ++ ++ R    PD V +  LI G      I  A +   ++    
Sbjct: 710 FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGAS 769

Query: 208 CKPNVITYSTLINGLCRTG------------HTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           C+PN  TY  L+  L +                ++ L++  ++     K G+   P   T
Sbjct: 770 CEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL--NPTVTT 827

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+++I G CK G +++A  L   M  K ++P+   Y  LI   C    + +A   +  M 
Sbjct: 828 YSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMS 887

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           + G QP + ++ +++  LC  G  ++   L   ++  G N +   +  L DG    G V+
Sbjct: 888 ECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVD 947

Query: 376 HAKELFVSMESMGC 389
              ++   ME   C
Sbjct: 948 ICFQMLSIMEKRYC 961



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 22/274 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++ +      K    +    L  ++   G+ PD+ TYNILI+    MG +   F  
Sbjct: 702 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 761

Query: 165 LGRILRSCFTPDAVAF----TSLIKGLCAESRIMEAAALFT------------KLKAFGC 208
           L R++ +   P+   +      L+KG  A  R ++ + ++             ++   G 
Sbjct: 762 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL 821

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V TYS+LI G C+ G    A  L + M  G G       PN   YT +I   C   F
Sbjct: 822 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMC-GKG-----LSPNEDIYTLLIKCCCDTKF 875

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA      M +    P + +Y  L+ G C   D+ +   L  ++++ G   D V + +
Sbjct: 876 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI 935

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           + D L K G +D   ++L +M  R    ++ T++
Sbjct: 936 LNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYA 969


>gi|449477018|ref|XP_004154904.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 567

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/336 (31%), Positives = 159/336 (47%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A C+FD M       P L S N L   L +       L +++++ + G+ PD+++Y I++
Sbjct: 205 ALCVFDNM-GKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMV 263

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +CK GRV   F  +  + RSC  P+ V + SLI G  +   +  A  +   +   G  
Sbjct: 264 NAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIP 323

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGN-----GKFGVVC--------------- 249
            N  TY+ LI G C+ G    A  LF  M   N       +GV+                
Sbjct: 324 ENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRI 383

Query: 250 ---------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                    K NTV   ++I+G CK G V+KA E+ + MKD N+ PD   YN+L+ GFC 
Sbjct: 384 RDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCK 443

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             D+ +A  L  EM ++GV   VVT+N ++  L   G ++ A  +  LM  RGV PN  T
Sbjct: 444 QEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVT 503

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + TL+D F   G  + A  ++    S G   ++  Y
Sbjct: 504 YCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLY 539



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 142/289 (49%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T F+++    A+       L +F  +   G  P L + N L++   + G      +V  +
Sbjct: 187 TVFDMILKVYAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQ 246

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     PD  ++T ++   C E R+ EA     +++   C+PNV+TY++LI+G    G 
Sbjct: 247 MIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGD 306

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  +   M+            N+ TYT +I G CK G +++A++LF  M +KN+  D
Sbjct: 307 VCGAKKVLALMSEKG------IPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVD 360

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
              Y  LIH +C A   ++A  +   M+  G++ + V  N +++  CK G +++A+ +L 
Sbjct: 361 EHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLV 420

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M    + P++  ++TL+DGFC       A +L   M + G   TV +Y
Sbjct: 421 SMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTY 469



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 69/255 (27%), Positives = 126/255 (49%), Gaps = 6/255 (2%)

Query: 133 LNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESR 192
           ++  G+  +  TY +LI  +CK G++     + G ++      D   +  LI   C   R
Sbjct: 317 MSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLFGCMMEKNLFVDEHVYGVLIHAYCTAGR 376

Query: 193 IMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
           + +A  +   +   G K N +  ++LING C+ GH   A  +   M + N       KP+
Sbjct: 377 VDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWN------LKPD 430

Query: 253 TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
           +  Y T++DG CK+    KA +L  +M +K +N  VVTYN+L+    +      A  +  
Sbjct: 431 SYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWN 490

Query: 313 EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
            M  +GV P+ VT+  ++D   K G  D A  + +  + +G   + + ++T++ GFC   
Sbjct: 491 LMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKME 550

Query: 373 RVNHAKELFVSMESM 387
           ++  A+E+F+ M+ +
Sbjct: 551 KLVQAQEIFLKMKEL 565


>gi|242055005|ref|XP_002456648.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
 gi|241928623|gb|EES01768.1| hypothetical protein SORBIDRAFT_03g040130 [Sorghum bicolor]
          Length = 702

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 94/291 (32%), Positives = 149/291 (51%), Gaps = 7/291 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
           +T++N++   L  +        L K+L N     PD  T+  LI+  C+ G  +  F +L
Sbjct: 368 ITTYNIMTKGLLDSGMVSEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEIL 427

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
                S    D  +++S+I   C + R  +A  ++  +   GCKPN   Y+ LING CR 
Sbjct: 428 EDARNSGEELDVFSYSSMINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRV 487

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                A+ ++ EM + NG     C P  +TY T+IDGLCK     +A  L  +M ++   
Sbjct: 488 SKINDAIKIYIEMTS-NG-----CCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERGFK 541

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD+ TY SLI G C     + A  +  E++D G+Q DV+  N+++  LC  GK+DEA  +
Sbjct: 542 PDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCI 601

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              M  +  +PN  T++TLMDGF   G ++ A  L+ ++   G K  + +Y
Sbjct: 602 YLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTY 652



 Score =  157 bits (397), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 89/309 (28%), Positives = 161/309 (52%), Gaps = 6/309 (1%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +   + N     P   +F  L   L +  + +    + +   ++G   D+++Y+ 
Sbjct: 385 SEATELLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSYSS 444

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN FCK GR      V   +++    P++  + +LI G C  S+I +A  ++ ++ + G
Sbjct: 445 MINRFCKDGRTHDANEVYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNG 504

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P +ITY+TLI+GLC+      A +L +EM           KP+  TY ++I GLC++ 
Sbjct: 505 CCPTIITYNTLIDGLCKAEKYQEASSLTKEMLERG------FKPDIRTYASLIRGLCRDK 558

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD A  ++ ++ D  +  DV+ +N LIHG C A   +EA C+ +EM ++   P++VT+N
Sbjct: 559 KVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYN 618

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            +MD   + G +D+A+ L   ++  G+ P+  T++T + G C   R      L   + + 
Sbjct: 619 TLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLAT 678

Query: 388 GCKHTVFSY 396
           G   TV ++
Sbjct: 679 GIMPTVITW 687



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 153/353 (43%), Gaps = 46/353 (13%)

Query: 84  AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF---- 139
           A+ P+ A   F  + ++    P + S N L     + + Y    + F  L S G F    
Sbjct: 96  ALMPDAALAAFRDLPSLLGCNPGVRSHNTLLDAFVRARRYSDADAFFASL-SHGAFGRRI 154

Query: 140 -PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+L TYNI++   C  G V     +   + R    PD V +++L+ GL    ++  A  
Sbjct: 155 APNLQTYNIILRSLCARGDVDRAVSLFSSLRRRGVAPDRVTYSTLMSGLAKHDQLDNALD 214

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L  ++  +G + + + Y+ L++G  RTG    A+ ++E++    G       PN  TY  
Sbjct: 215 LLDEMPNYGVQADAVCYNALLSGCFRTGMFEKAMKVWEQLVRDPG-----ASPNLATYKV 269

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           ++DGLCK G   +A E++ +M   N   D VTY  LIHG C + D + A  +  +M+  G
Sbjct: 270 MLDGLCKLGRFKEAGEVWSRMMANNHQADTVTYGILIHGLCRSGDVDSAARVYSDMVKAG 329

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV------------------------ 354
           +  DV  +N ++   C+ G+  EA +  +     G+                        
Sbjct: 330 LVLDVSVYNSLIKGFCEVGRTGEAWKFWDSTGFSGIRQITTYNIMTKGLLDSGMVSEATE 389

Query: 355 -----------NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                      +P+  TF TL+ G C  G  N A E+     + G +  VFSY
Sbjct: 390 LLKQLENDASCSPDKVTFGTLIHGLCENGYANRAFEILEDARNSGEELDVFSY 442



 Score =  144 bits (363), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 75/237 (31%), Positives = 134/237 (56%), Gaps = 6/237 (2%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           ++K +   G  P+ + YN LIN FC++ +++    +   +  +   P  + + +LI GLC
Sbjct: 461 VYKNMVKDGCKPNSHVYNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLC 520

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              +  EA++L  ++   G KP++ TY++LI GLCR     VAL +++E+ +   +  V+
Sbjct: 521 KAEKYQEASSLTKEMLERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVM 580

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
                  +  +I GLC  G VD+A  ++L+MK+KN +P++VTYN+L+ GF      ++A 
Sbjct: 581 ------VHNILIHGLCSAGKVDEAFCIYLEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAA 634

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            L   ++D G++PD+VT+N  +  LC   +  E   LL  ++  G+ P   T+S L+
Sbjct: 635 SLWTAILDNGLKPDIVTYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILV 691



 Score =  134 bits (338), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 119/230 (51%), Gaps = 6/230 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L     +    +  + ++  + S G  P + TYN LI+  CK  +      +   +L
Sbjct: 477 YNALINGFCRVSKINDAIKIYIEMTSNGCCPTIITYNTLIDGLCKAEKYQEASSLTKEML 536

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
              F PD   + SLI+GLC + ++  A  ++ ++   G + +V+ ++ LI+GLC  G   
Sbjct: 537 ERGFKPDIRTYASLIRGLCRDKKVDVALRIWDEILDAGLQVDVMVHNILIHGLCSAGKVD 596

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  ++ EM   N      C PN VTY T++DG  + G +DKA  L+  + D  + PD+V
Sbjct: 597 EAFCIYLEMKEKN------CSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIV 650

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
           TYN+ I G C  N   E   LL E++  G+ P V+T+++++  + K G +
Sbjct: 651 TYNTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAVIKYGPI 700



 Score = 52.4 bits (124), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 5/102 (4%)

Query: 88  NEAFCIFDYMLNMRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           +EAFCI+   L M+     P L ++N L     +    D   SL+  +   GL PD+ TY
Sbjct: 596 DEAFCIY---LEMKEKNCSPNLVTYNTLMDGFYEIGSIDKAASLWTAILDNGLKPDIVTY 652

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           N  I   C   R   G ++L  +L +   P  + ++ L++ +
Sbjct: 653 NTRIKGLCSCNRTPEGVLLLNEVLATGIMPTVITWSILVRAV 694


>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g09680
 gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
 gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 607

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 154/301 (51%), Gaps = 7/301 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD  +  R   P + SFN L     K  + D    L  ++  +   PD++TY+ 
Sbjct: 257 SDAQKVFDE-ITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSA 315

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  ++     +   + +    P+ V FT+LI G      I      + K+ + G
Sbjct: 316 LINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKG 375

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +P+++ Y+TL+NG C+ G  + A N+ + M           +P+ +TYTT+IDG C+ G
Sbjct: 376 LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG------LRPDKITYTTLIDGFCRGG 429

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V+ A E+  +M    I  D V +++L+ G C      +A   L EM+  G++PD VT+ 
Sbjct: 430 DVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYT 489

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           ++MD  CK G      +LL+ M   G  P+  T++ L++G C  G++ +A  L  +M ++
Sbjct: 490 MMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNADMLLDAMLNI 549

Query: 388 G 388
           G
Sbjct: 550 G 550



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 86/293 (29%), Positives = 150/293 (51%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +  FN+L     K  +      +F  +    L P + ++N LIN +CK+G +  GF 
Sbjct: 237 PLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFR 296

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  ++ +S   PD   +++LI  LC E+++  A  LF ++   G  PN + ++TLI+G  
Sbjct: 297 LKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGHS 356

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           R G   +    +++M +         +P+ V Y T+++G CK G +  A+ +   M  + 
Sbjct: 357 RNGEIDLMKESYQKMLSKG------LQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRG 410

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PD +TY +LI GFC   D   A  +  EM   G++ D V F+ ++  +CK G++ +A 
Sbjct: 411 LRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAE 470

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           R L  M+  G+ P+  T++ +MD FC  G      +L   M+S G   +V +Y
Sbjct: 471 RALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTY 523



 Score =  157 bits (397), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 6/272 (2%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           T+   +  +   G   ++Y +NIL+N FCK G +S    V   I +    P  V+F +LI
Sbjct: 223 TIWGFYMEILDAGFPLNVYVFNILMNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLI 282

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
            G C    + E   L  +++    +P+V TYS LIN LC+      A  LF+EM     K
Sbjct: 283 NGYCKVGNLDEGFRLKHQMEKSRTRPDVFTYSALINALCKENKMDGAHGLFDEMC----K 338

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
            G++  PN V +TT+I G  + G +D  KE + +M  K + PD+V YN+L++GFC   D 
Sbjct: 339 RGLI--PNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDL 396

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
             A  ++  M+ +G++PD +T+  ++D  C+ G ++ A  + + M   G+  +   FS L
Sbjct: 397 VAARNIVDGMIRRGLRPDKITYTTLIDGFCRGGDVETALEIRKEMDQNGIELDRVGFSAL 456

Query: 365 MDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + G C  GRV  A+     M   G K    +Y
Sbjct: 457 VCGMCKEGRVIDAERALREMLRAGIKPDDVTY 488


>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
           mitochondrial-like [Brachypodium distachyon]
          Length = 897

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/293 (29%), Positives = 146/293 (49%), Gaps = 6/293 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP + +++       K + +D    +F+ +       +  TYN++I+  C+ G V   F 
Sbjct: 242 PPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRDCAMNEVTYNVMISGLCRSGAVEEAFG 301

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
               ++    +PDA  + +L+ GLC   R+ EA AL  ++   G KPNV+ Y+TL++G  
Sbjct: 302 FKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFM 361

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A ++  EM +         +PN + Y  +I GLCK G + +A +L  +M    
Sbjct: 362 KEGKAAEAFDILNEMISAG------VQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVG 415

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD  TY+ L+ G     D + A  LL EM + G+ P+  T+ ++++ LC+NG+  EA 
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAG 475

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LLE MI  G+ PN   ++ L+ G    G ++ A E   +M        +F Y
Sbjct: 476 NLLEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCY 528



 Score =  147 bits (371), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 148/295 (50%), Gaps = 10/295 (3%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +   MLN    P   T  +LL G   K+  ++ V S+ + +  +G  PD + Y I+I   
Sbjct: 582 LLQQMLNSGLKPNADTYTDLLEGYF-KSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNL 640

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            +   +   F+VL  + ++   PD   ++SLI GLC  + + +A  L  ++   G +P +
Sbjct: 641 SRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGI 700

Query: 213 ITYSTLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           + Y+ LI+G CR+G    A N+F+  +A G         PN VTYT +IDG CK G +  
Sbjct: 701 VCYNALIDGFCRSGDISRARNVFDSILAKG-------LLPNCVTYTALIDGNCKNGDITD 753

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A +L+  M D+ I PD   YN L  G   A D  +A  L  EM ++G    V  F+ ++ 
Sbjct: 754 AFDLYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-HVSLFSTLVR 812

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             CK G++ E  +LL +M+ R + PN  T   ++  F   G++  A  +F  ++ 
Sbjct: 813 GFCKRGRLQETEKLLHVMMDREIVPNAQTVENVITEFGKAGKLCEAHRVFAELQQ 867



 Score =  140 bits (354), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 129/286 (45%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N L   L +    + V  L   +   G+ PD+YTY+  +   CK         V   + R
Sbjct: 214 NGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRR 273

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
                + V +  +I GLC    + EA     ++  +G  P+  TY  L+NGLC+ G    
Sbjct: 274 RDCAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKE 333

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
           A  L +EM+          KPN V Y T++DG  KEG   +A ++  +M    + P+ + 
Sbjct: 334 AKALLDEMSCSG------LKPNVVVYATLVDGFMKEGKAAEAFDILNEMISAGVQPNKIM 387

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           Y++LI G C       A+ LL EM+  G +PD  T++ +M    ++   D A  LL  M 
Sbjct: 388 YDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEMR 447

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             G+ PN  T+  +++G C  G    A  L   M S G K   F Y
Sbjct: 448 NSGILPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFMY 493



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 154/353 (43%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG       + AF + + M N    P   T + ++   L +        +L + + S GL
Sbjct: 428 QGHFQHYDKDGAFELLNEMRNSGILPNAYT-YGIMINGLCQNGESKEAGNLLEEMISEGL 486

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ + Y  LI    K G +S     L  + ++   PD   + SLIKGL    RI EA  
Sbjct: 487 KPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLSTVGRIEEAEE 546

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            + +++  G  P+  TYS LI+G C+T +   A  L ++M N         KPN  TYT 
Sbjct: 547 YYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSG------LKPNADTYTD 600

Query: 259 IIDGLCKEGFVDKAKELFLQM---KDKNIN------------------------------ 285
           +++G  K    +K   +   M    DK  N                              
Sbjct: 601 LLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEVEKNG 660

Query: 286 --PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             PD+  Y+SLI G C   D  +A  LL EM  +G++P +V +N ++D  C++G +  A 
Sbjct: 661 LVPDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRAR 720

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + + ++ +G+ PN  T++ L+DG C  G +  A +L+  M   G     F Y
Sbjct: 721 NVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVY 773



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 148/338 (43%), Gaps = 42/338 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            EAF   + M++   SP   T +  L   L K        +L   ++ +GL P++  Y  
Sbjct: 297 EEAFGFKEEMVDYGLSPDAFT-YGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYAT 355

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++ F K G+ +  F +L  ++ +   P+ + + +LI+GLC   ++  A+ L  ++   G
Sbjct: 356 LVDGFMKEGKAAEAFDILNEMISAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVG 415

Query: 208 CKP-----------------------------------NVITYSTLINGLCRTGHTIVAL 232
            +P                                   N  TY  +INGLC+ G +  A 
Sbjct: 416 HRPDTFTYHPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEAG 475

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           NL EEM +         KPN   Y  +I G  KEG +  A E    M   N+ PD+  YN
Sbjct: 476 NLLEEMISEG------LKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYN 529

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
           SLI G        EA     ++  +G+ PD  T++ ++   CK   +++A +LL+ M+  
Sbjct: 530 SLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNS 589

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
           G+ PN  T++ L++G+  +        +  SM   G K
Sbjct: 590 GLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDK 627



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 148/314 (47%), Gaps = 40/314 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L+     +     + ++   GL PD +TY+ LI+ +CK   +     +
Sbjct: 523 PDLFCYNSLIKGLSTVGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQL 582

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L S   P+A  +T L++G    +   + +++   +   G KP+   Y  +I  L R
Sbjct: 583 LQQMLNSGLKPNADTYTDLLEGYFKSNDHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSR 642

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           + +  VA  +  E+     K G+V  P+   Y+++I GLCK   ++KA  L  +M  + +
Sbjct: 643 SENMEVAFMVLTEVE----KNGLV--PDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGL 696

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +V YN+LI GFC + D + A  +   ++ +G+ P+ VT+  ++D  CKNG + +A  
Sbjct: 697 EPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFD 756

Query: 345 LLELMILRGVNPNT----------------------------------STFSTLMDGFCL 370
           L + M+ RG+ P+                                   S FSTL+ GFC 
Sbjct: 757 LYKDMLDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYAHVSLFSTLVRGFCK 816

Query: 371 TGRVNHAKELFVSM 384
            GR+   ++L   M
Sbjct: 817 RGRLQETEKLLHVM 830



 Score = 89.7 bits (221), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 101/234 (43%), Gaps = 8/234 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  ++ L   L K    +  + L   +   GL P +  YN LI+ FC+ G +S    V
Sbjct: 663 PDLHIYSSLISGLCKMADMEKAVGLLDEMAKEGLEPGIVCYNALIDGFCRSGDISRARNV 722

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              IL     P+ V +T+LI G C    I +A  L+  +   G  P+   Y+ L  G   
Sbjct: 723 FDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNVLATGCSD 782

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL L EEM N           +   ++T++ G CK G + + ++L   M D+ I
Sbjct: 783 AADLEQALFLTEEMFNRG-------YAHVSLFSTLVRGFCKRGRLQETEKLLHVMMDREI 835

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV-QPDVVTFNVIMDELCKNG 337
            P+  T  ++I  F  A    EA+ +  E+  +   Q     F+++  ++   G
Sbjct: 836 VPNAQTVENVITEFGKAGKLCEAHRVFAELQQKKASQSSTDRFSLLFTDMINKG 889



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/258 (24%), Positives = 99/258 (38%), Gaps = 53/258 (20%)

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P A AF  L   LCA S   +A  L  ++      P ++  S                 +
Sbjct: 113 PSADAFARLAASLCAASHFPQANGLLHQMILAHPHPPLVLAS-----------------I 155

Query: 235 FEEMANGNGKFGVVCKPN-TVTYTTIIDGLCKEGFVDKAKELFLQMKD------------ 281
              + + + +       + T     ++D   K G V  A ++ L M D            
Sbjct: 156 QRAIQDSDARSPSPSPSHSTAVLDVLVDTYKKNGSVRTAAQVVLMMGDLGLAPTRRCCNG 215

Query: 282 -----------------------KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
                                    I PDV TY++ +   C A D++ A  +  EM  + 
Sbjct: 216 LLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAKKVFEEMRRRD 275

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
              + VT+NV++  LC++G ++EA    E M+  G++P+  T+  LM+G C  GR+  AK
Sbjct: 276 CAMNEVTYNVMISGLCRSGAVEEAFGFKEEMVDYGLSPDAFTYGALMNGLCKGGRLKEAK 335

Query: 379 ELFVSMESMGCKHTVFSY 396
            L   M   G K  V  Y
Sbjct: 336 ALLDEMSCSGLKPNVVVY 353


>gi|356542070|ref|XP_003539494.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02060,
           chloroplastic-like [Glycine max]
          Length = 729

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 90/274 (32%), Positives = 148/274 (54%), Gaps = 6/274 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FN L    A+   +   + LF+ + S  + P + T+N L++   K GR +    V   +L
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEML 210

Query: 170 RSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            +   +PD   +  LI+G C  S + E    F ++++F C  +V+TY+TL++GLCR G  
Sbjct: 211 GTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLCRAGKV 270

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            +A NL     NG GK      PN VTYTT+I G C +  V++A  +  +M  + + P++
Sbjct: 271 RIARNL----VNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNM 326

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMM-DQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           +TYN+L+ G C A+  ++   +L  M  D G  PD  TFN I+   C  G +DEA ++ E
Sbjct: 327 ITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFE 386

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            M    +  +++++STL+   C  G  + A++LF
Sbjct: 387 SMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLF 420



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 16/307 (5%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDT----VLSLFKRLNSTGLFPDL 142
           P++A   F +      S  P + F ++   L + ++ +     + S+ K    T    D 
Sbjct: 91  PSKALRFFKWTQQKGFSHTPESYF-IMLEILGRERNLNVARNFLFSIEKHSKGTVKLEDR 149

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
           + +N LI  + + G       +   +     +P  V F SL+  L    R   A  ++ +
Sbjct: 150 F-FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDE 208

Query: 203 -LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
            L  +G  P+  TY+ LI G C+          F EM + N      C  + VTY T++D
Sbjct: 209 MLGTYGVSPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFN------CDADVVTYNTLVD 262

Query: 262 GLCKEGFVDKAKELFLQMKDK--NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           GLC+ G V  A+ L   M  K   +NP+VVTY +LI G+C   +  EA  +L EM  +G+
Sbjct: 263 GLCRAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGL 322

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAK 378
           +P+++T+N ++  LC+  K+D+   +LE M    G +P+T TF+T++   C  G ++ A 
Sbjct: 323 KPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEAL 382

Query: 379 ELFVSME 385
           ++F SM+
Sbjct: 383 KVFESMK 389



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 71/211 (33%), Positives = 117/211 (55%), Gaps = 7/211 (3%)

Query: 180 FTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA 239
           F SLI+         E+  LF  +K+    P+V+T+++L++ L + G T +A  +++EM 
Sbjct: 151 FNSLIRSYAEAGLFKESMKLFQTMKSIAVSPSVVTFNSLMSILLKRGRTNMAKEVYDEML 210

Query: 240 NGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
              G +GV   P+T TY  +I G CK   VD+    F +M+  N + DVVTYN+L+ G C
Sbjct: 211 ---GTYGV--SPDTCTYNVLIRGFCKNSMVDEGFRFFREMESFNCDADVVTYNTLVDGLC 265

Query: 300 YANDWNEANCLLIEMMD--QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPN 357
            A     A  L+  M    +G+ P+VVT+  ++   C   +++EA  +LE M  RG+ PN
Sbjct: 266 RAGKVRIARNLVNGMGKKCEGLNPNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPN 325

Query: 358 TSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             T++TL+ G C   +++  K++   M+S G
Sbjct: 326 MITYNTLVKGLCEAHKLDKMKDVLERMKSDG 356



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 71/265 (26%), Positives = 123/265 (46%), Gaps = 7/265 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L       +  +  L + + + S GL P++ TYN L+   C+  ++     V
Sbjct: 289 PNVVTYTTLIRGYCMKQEVEEALVVLEEMTSRGLKPNMITYNTLVKGLCEAHKLDKMKDV 348

Query: 165 LGRILRSC-FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L R+     F+PD   F ++I   C    + EA  +F  +K F    +  +YSTLI  LC
Sbjct: 349 LERMKSDGGFSPDTFTFNTIIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLC 408

Query: 224 RTGHTIVALNLFEEMANGN---GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK 280
           + G   +A  LF+E+        KFG   KP   +Y  I + LC+ G   KA+ +  Q+ 
Sbjct: 409 QKGDYDMAEQLFDELFEKEILLSKFG--SKPLAASYNPIFESLCEHGKTKKAERVIRQLM 466

Query: 281 DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMD 340
            +    D  +Y ++I G C    +     LL+ M+ +   PD+  ++ ++D   +  K  
Sbjct: 467 KRGTQ-DPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPL 525

Query: 341 EASRLLELMILRGVNPNTSTFSTLM 365
            A   LE M+     P TST+ +++
Sbjct: 526 LAKETLEKMLKSSYQPKTSTWHSVL 550



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/300 (26%), Positives = 139/300 (46%), Gaps = 22/300 (7%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PDLYTYNI 147
           EA  + + M + R   P + ++N L   L +    D +  + +R+ S G F PD +T+N 
Sbjct: 309 EALVVLEEMTS-RGLKPNMITYNTLVKGLCEAHKLDKMKDVLERMKSDGGFSPDTFTFNT 367

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL---- 203
           +I+  C  G +     V   + +     D+ ++++LI+ LC +     A  LF +L    
Sbjct: 368 IIHLHCCAGNLDEALKVFESMKKFRIPADSASYSTLIRSLCQKGDYDMAEQLFDELFEKE 427

Query: 204 ---KAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
                FG KP   +Y+ +   LC  G T  A  +  ++     +       +  +YTT+I
Sbjct: 428 ILLSKFGSKPLAASYNPIFESLCEHGKTKKAERVIRQLMKRGTQ-------DPQSYTTVI 480

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            G CKEG  +   EL + M  ++  PD+  Y+ LI GF   +    A   L +M+    Q
Sbjct: 481 MGHCKEGAYESGYELLMWMLRRDFLPDIEIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQ 540

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGV--NPNTSTFSTLMDGFCLTGRVNHAK 378
           P   T++ ++ +L + G   E+S ++ +M+ + V  N N ST S  +    L GR  H +
Sbjct: 541 PKTSTWHSVLAKLLEKGCAHESSCVIVMMLEKNVRQNINLSTESLQL----LFGREQHER 596



 Score = 63.9 bits (154), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/333 (24%), Positives = 136/333 (40%), Gaps = 41/333 (12%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCL---A 118
           D AS    ++  C+  G  D+     +E F   + +L+   S P   S+N +F  L    
Sbjct: 396 DSASYSTLIRSLCQK-GDYDMAEQLFDELFEK-EILLSKFGSKPLAASYNPIFESLCEHG 453

Query: 119 KTKHYDTVL-SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDA 177
           KTK  + V+  L KR        D  +Y  +I   CK G    G+ +L  +LR  F PD 
Sbjct: 454 KTKKAERVIRQLMKRGTQ-----DPQSYTTVIMGHCKEGAYESGYELLMWMLRRDFLPDI 508

Query: 178 VAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG----HTIVALN 233
             +  LI G   + + + A     K+     +P   T+ +++  L   G     + V + 
Sbjct: 509 EIYDYLIDGFLQKDKPLLAKETLEKMLKSSYQPKTSTWHSVLAKLLEKGCAHESSCVIVM 568

Query: 234 LFEEMANGNGKFG------VVCKPNTVTYTTIIDGLCKEGFVDKAKEL--FLQMKDK--- 282
           + E+    N          +  +        II+ L K G+  K +E+  FL  + K   
Sbjct: 569 MLEKNVRQNINLSTESLQLLFGREQHERAFEIINLLYKNGYYVKIEEVAQFLLKRGKLSE 628

Query: 283 -----------NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
                      + N D+   N+ I   C  N  +EA  L  E+++ G+  ++   + ++ 
Sbjct: 629 ACKLLLFSLENHQNVDIDLCNATILNLCKINKVSEAFSLCYELVENGLHQELTCLDDLIA 688

Query: 332 ELCKNGKMDEAS----RLLELMILRGVNPNTST 360
            L + GK +EA+    RL  L  L G  PN ST
Sbjct: 689 ALEEGGKREEAAFISKRLPRLDNLNGSMPNHST 721


>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Cucumis sativus]
          Length = 847

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS-TGLFPDLYTYN 146
           ++A  + D M +   SP  ++ + ++ G L + K  + +  L K++ + + L PD  TYN
Sbjct: 368 DQAMELIDQMPSKGCSPDKVSYYTVM-GLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYN 426

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI    K G       +L    +  F  D V +++++   C E +I +A  L +++ + 
Sbjct: 427 SLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSK 486

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           GC P+V+TY+++++G CR G    A  + ++M   +      CKPN VTYTT ++GLC+ 
Sbjct: 487 GCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHH------CKPNAVTYTTFLNGLCRN 540

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G   +A+++    +++   P+ +TY+ ++HG       NEA  ++ EM+ +G  P+ V  
Sbjct: 541 GKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEI 600

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           N+++  LC++GK  EA++LL+  + +G   N   F+T++ GFC    +  A  L   M
Sbjct: 601 NLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDM 658



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 144/287 (50%), Gaps = 12/287 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L+K  H D  L + +         D   Y+ +++ +CK G++     +
Sbjct: 420 PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKEL 479

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +      PD V +TS++ G C   ++ +A  +  ++    CKPN +TY+T +NGLCR
Sbjct: 480 VSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCR 539

Query: 225 TGHTIVA---LNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
            G ++ A   +N+ EE             PN +TY+ ++ GL +EG +++A ++  +M  
Sbjct: 540 NGKSLEARKMMNMSEEEW---------WTPNAITYSVVVHGLRREGKLNEACDVVREMIG 590

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDE 341
           K   P+ V  N L+H  C      EAN LL E M++G   +VV F  ++   C+   ++ 
Sbjct: 591 KGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEA 650

Query: 342 ASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           A  LL+ M L   +P+T T++ L+D    T R+  A EL + M   G
Sbjct: 651 ALSLLDDMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQG 697



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 82/285 (28%), Positives = 143/285 (50%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L+  N     L         L   +R+   G+ P++ TYN LI  +C + +V     +
Sbjct: 314 PNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYCNVHQVDQAMEL 373

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLC 223
           + ++     +PD V++ +++  LC + R+ E   L  K++      P+ +TY++LI  L 
Sbjct: 374 IDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLLPDHVTYNSLIQMLS 433

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + GH   AL + +E         +  K + V Y+ I+   CKEG + KAKEL  +M  K 
Sbjct: 434 KHGHGDEALEILQEAEK------LRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKG 487

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            +PDVVTY S++ GFC     ++A  ++ +M     +P+ VT+   ++ LC+NGK  EA 
Sbjct: 488 CDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGLCRNGKSLEAR 547

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ +       PN  T+S ++ G    G++N A ++   M   G
Sbjct: 548 KMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKG 592



 Score =  130 bits (328), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 140/293 (47%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L          D  + L  ++ S G  PD  +Y  ++   C+  R++    +
Sbjct: 349 PNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIREL 408

Query: 165 LGRI-LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           + ++   S   PD V + SLI+ L       EA  +  + +    K + + YS +++  C
Sbjct: 409 IKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYC 468

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A  L  EM      F   C P+ VTYT+++DG C+ G +D+AK++  QM   +
Sbjct: 469 KEGKIQKAKELVSEM------FSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHH 522

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
             P+ VTY + ++G C      EA  ++    ++   P+ +T++V++  L + GK++EA 
Sbjct: 523 CKPNAVTYTTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEAC 582

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++  MI +G  PN    + L+   C  G+   A +L     + GC   V ++
Sbjct: 583 DVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNF 635



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 69/256 (26%), Positives = 127/256 (49%), Gaps = 8/256 (3%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
           VL+L ++    G+ P+L   N  I+       +        R++     P+ V +  LIK
Sbjct: 303 VLTLMQK---AGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIK 359

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G C   ++ +A  L  ++ + GC P+ ++Y T++  LCR         L ++M   +   
Sbjct: 360 GYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSKLL 419

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
                P+ VTY ++I  L K G  D+A E+  + +      D V Y++++H +C      
Sbjct: 420 -----PDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQ 474

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A  L+ EM  +G  PDVVT+  ++D  C+ GK+D+A ++++ M      PN  T++T +
Sbjct: 475 KAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFL 534

Query: 366 DGFCLTGRVNHAKELF 381
           +G C  G+   A+++ 
Sbjct: 535 NGLCRNGKSLEARKMM 550



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 124/246 (50%), Gaps = 7/246 (2%)

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           + + GR+     VL  + ++   P+     + I  L   + + +A     ++   G  PN
Sbjct: 291 YSRAGRLRDAMKVLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPN 350

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+TY+ LI G C       A+ L ++M +        C P+ V+Y T++  LC++  +++
Sbjct: 351 VVTYNCLIKGYCNVHQVDQAMELIDQMPSKG------CSPDKVSYYTVMGLLCRDKRLNE 404

Query: 272 AKELFLQMK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
            +EL  +M+ D  + PD VTYNSLI         +EA  +L E      + D V ++ I+
Sbjct: 405 IRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIV 464

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
              CK GK+ +A  L+  M  +G +P+  T+++++DGFC  G+++ AK++   M    CK
Sbjct: 465 HAYCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCK 524

Query: 391 HTVFSY 396
               +Y
Sbjct: 525 PNAVTY 530



 Score =  107 bits (267), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 114/244 (46%), Gaps = 31/244 (12%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
            L   + S G  PD+ TY  +++ FC++G++     ++ ++ +    P+AV +T+ + GL
Sbjct: 478 ELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTYTTFLNGL 537

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF-- 245
           C   + +EA  +    +     PN ITYS +++GL R G    A ++  EM  G G F  
Sbjct: 538 CRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMI-GKGFFPN 596

Query: 246 ----------------------------GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFL 277
                                          C  N V +TT+I G C++  ++ A  L  
Sbjct: 597 PVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLD 656

Query: 278 QMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
            M   N +PD VTY +LI      +   EA  L ++M+ QG+ P  VT+  ++ + C+ G
Sbjct: 657 DMYLCNKHPDTVTYTALIDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKG 716

Query: 338 KMDE 341
           ++++
Sbjct: 717 RVED 720



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 124/282 (43%), Gaps = 39/282 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+  TY+++++   + G+++    V+  ++   F P+ V    L+  LC + +  EA  L
Sbjct: 560 PNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFPNPVEINLLVHSLCRDGKPREANQL 619

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +    GC  NV+ ++T+I+G C+      AL+L ++M   N        P+TVTYT +
Sbjct: 620 LKECMNKGCAVNVVNFTTVIHGFCQKDDLEAALSLLDDMYLCNKH------PDTVTYTAL 673

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC-------------------- 299
           ID L K   +++A EL ++M  + + P  VTY S+IH +C                    
Sbjct: 674 IDALAKTDRIEEATELTMKMLRQGLVPSPVTYRSVIHQYCRKGRVEDLLKLLKKMLLKSR 733

Query: 300 YANDWN-------------EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +   +N             EAN LL E++    + D  T +V+M+     G    A ++ 
Sbjct: 734 FQTAYNLVIEKLCKFGYLEEANSLLGEVLRTASRTDAKTCHVLMESYLNVGIPMSAYKVA 793

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M  R + P+      +     + G++  A  L +     G
Sbjct: 794 CRMFNRNLIPDLKLCEKVSKRLVVEGKLEEADRLVLRFVERG 835



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/147 (25%), Positives = 67/147 (45%)

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
           + ++  Y  +++ L K      AK +   M  + I      +  ++  +  A    +A  
Sbjct: 243 RHDSSVYLVMLEILSKTKLCQGAKRILRLMTRRRIQLCPEAFGFVMVSYSRAGRLRDAMK 302

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +L  M   GV+P++   N  +  L    ++ +A R  E M+L G+ PN  T++ L+ G+C
Sbjct: 303 VLTLMQKAGVEPNLSICNTAIHILVMGNELKKALRFAERMVLIGIAPNVVTYNCLIKGYC 362

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
              +V+ A EL   M S GC     SY
Sbjct: 363 NVHQVDQAMELIDQMPSKGCSPDKVSY 389


>gi|224129154|ref|XP_002320514.1| predicted protein [Populus trichocarpa]
 gi|222861287|gb|EEE98829.1| predicted protein [Populus trichocarpa]
          Length = 478

 Score =  160 bits (404), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/303 (30%), Positives = 156/303 (51%), Gaps = 8/303 (2%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P + F    +   M  S P +  F+ LF   A    +     +F R+   G  P + + N
Sbjct: 111 PGKLFDTLLFSYRMCDSSPRV--FDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCN 168

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
             ++      RV         + R   +P++  F  ++  LC   ++ +A  +  ++++ 
Sbjct: 169 AYLSSLLDFHRVDIALTFYREMRRCRISPNSYTFNLVLSALCKSGKLEKAVEVLREMESV 228

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNV++Y+TLI G C  G     L++  ++ N  GK G+  +PN VT+ ++I G CKE
Sbjct: 229 GITPNVVSYNTLIAGHCNKG----LLSIATKLKNLMGKNGL--EPNVVTFNSLIHGFCKE 282

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G + +A   F +MK  N+ P+ VTYN+LI+G+    + N A  +  EMM  GV+ D++T+
Sbjct: 283 GKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTY 342

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N ++  LCK GK  +A+ L++ +    + PN ST+S L+ G C     + A +L+ SM  
Sbjct: 343 NALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVR 402

Query: 387 MGC 389
            GC
Sbjct: 403 SGC 405



 Score =  154 bits (388), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/297 (31%), Positives = 151/297 (50%), Gaps = 7/297 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A   +  M   R SP   T FNL+   L K+   +  + + + + S G+ P++ +YN LI
Sbjct: 183 ALTFYREMRRCRISPNSYT-FNLVLSALCKSGKLEKAVEVLREMESVGITPNVVSYNTLI 241

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              C  G +S    +   + ++   P+ V F SLI G C E ++ EA   F+++K     
Sbjct: 242 AGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVT 301

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN +TY+TLING  + G++ +A  ++EEM   NG      K + +TY  +I GLCKEG  
Sbjct: 302 PNTVTYNTLINGYGQVGNSNMAGKVYEEMMR-NG-----VKADILTYNALILGLCKEGKT 355

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            KA  L  ++  +N+ P+  TY++LI G C   + + A  L   M+  G  P+  TF ++
Sbjct: 356 KKAAFLVKELDKENLVPNASTYSALISGQCARKNSDRAFQLYKSMVRSGCHPNEQTFKML 415

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
                KN   + A  +L  M  R +  +++T   + DG C  G+ N A +L   ME+
Sbjct: 416 TSAFVKNEDFEGAFNVLMDMFARSMASDSNTLLEIYDGLCQCGKENLAMKLCHEMEA 472



 Score =  122 bits (306), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 88/298 (29%), Positives = 142/298 (47%), Gaps = 35/298 (11%)

Query: 124 DTVLSL-----FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL--RSCFTPD 176
           D VLSL      K LN   L   L T++I+++   K  +      +L  +L  RS   P 
Sbjct: 55  DHVLSLEFFNSLKTLNPISL--TLETHSIILHILTKKSKFKSAQSILRTLLASRSIDLPG 112

Query: 177 AV----------------AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            +                 F SL K     ++   A  +F+++K +G  P V + +  ++
Sbjct: 113 KLFDTLLFSYRMCDSSPRVFDSLFKTYAHMNKFRNATDVFSRMKDYGFLPTVESCNAYLS 172

Query: 221 GLCRTGHTIVALNLFEEMANGNGKFGVVCK--PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
            L       +AL  + EM          C+  PN+ T+  ++  LCK G ++KA E+  +
Sbjct: 173 SLLDFHRVDIALTFYREMRR--------CRISPNSYTFNLVLSALCKSGKLEKAVEVLRE 224

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M+   I P+VV+YN+LI G C     + A  L   M   G++P+VVTFN ++   CK GK
Sbjct: 225 MESVGITPNVVSYNTLIAGHCNKGLLSIATKLKNLMGKNGLEPNVVTFNSLIHGFCKEGK 284

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + EA+R    M +  V PNT T++TL++G+   G  N A +++  M   G K  + +Y
Sbjct: 285 LHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKVYEEMMRNGVKADILTY 342



 Score = 68.2 bits (165), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 53/212 (25%), Positives = 87/212 (41%), Gaps = 29/212 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L     K          F  +    + P+  TYN LIN + ++G  +    V
Sbjct: 267 PNVVTFNSLIHGFCKEGKLHEANRFFSEMKVMNVTPNTVTYNTLINGYGQVGNSNMAGKV 326

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              ++R+    D + + +LI GLC E +  +AA L  +L      PN  TYS LI+G C 
Sbjct: 327 YEEMMRNGVKADILTYNALILGLCKEGKTKKAAFLVKELDKENLVPNASTYSALISGQCA 386

Query: 225 TGHTIVALNLFEEMANG----------------------NGKFGVVCK-------PNTVT 255
             ++  A  L++ M                          G F V+          ++ T
Sbjct: 387 RKNSDRAFQLYKSMVRSGCHPNEQTFKMLTSAFVKNEDFEGAFNVLMDMFARSMASDSNT 446

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              I DGLC+ G  + A +L  +M+ + + P+
Sbjct: 447 LLEIYDGLCQCGKENLAMKLCHEMEARRLIPE 478


>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
          Length = 376

 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN +   L      D V+S+++ +N +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPNV  Y+TLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+G CK     +A  L  ++ DK ++P
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +    A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M L    PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNLWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 30/302 (9%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    ++K +  + + PD   YNI++N + ++ ++   F  L  ++ S       +F ++
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNTM 65

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE------- 236
           ++GL    ++ E  +++  +   G   +  TY  L++G C+ G+   +L++ E       
Sbjct: 66  MRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLEMAEQKGG 125

Query: 237 --------EMANG--------------NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
                    M NG              NG     CKPN   Y T+I+GL      + A  
Sbjct: 126 VLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIR 185

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F +M   + +P ++TYN+LI+GFC    + EA  L+ E++D+G+ P V+T++++M+ LC
Sbjct: 186 VFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLC 245

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            + K+  A +L   +  +G  P+    + L+ G C  G++  A  L+  M    C   + 
Sbjct: 246 LDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLALSLYFDMNLWKCAPNLV 305

Query: 395 SY 396
           S+
Sbjct: 306 SH 307



 Score =  108 bits (270), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 58/220 (26%), Positives = 111/220 (50%), Gaps = 10/220 (4%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L     ++  + +F+ + +    P + TYN LIN FCK       + +
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAYNL 221

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L     P  + ++ L++GLC + ++  A  L+ ++ + G KP+V  ++ LI GLC 
Sbjct: 222 VKELLDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQMHNILIRGLCS 281

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL+L+ +M          C PN V++ T+++G  K+G +  A  ++ ++    +
Sbjct: 282 VGKMQLALSLYFDMNLWK------CAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 335

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
            PD+++YN  + G C  N  ++A    I  +D  V   +V
Sbjct: 336 EPDIISYNITLEGLCSCNRISDA----ILFLDDAVTKKIV 371



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ ++ ++ +  ++PD V YN +++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNIMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN +M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             E  G     F+Y
Sbjct: 119 MAEQKGGVLDAFAY 132


>gi|125555763|gb|EAZ01369.1| hypothetical protein OsI_23402 [Oryza sativa Indica Group]
          Length = 619

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/289 (32%), Positives = 147/289 (50%), Gaps = 7/289 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M  M    P + +FN L     K    D V  L + +  +G   D+ TYN L
Sbjct: 206 EARSLFSRMKEM-GCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNAL 264

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           INCFCK GR+   +     + R     + V F++ +   C E  + EA  LF +++  G 
Sbjct: 265 INCFCKFGRMETAYGYFAAMKREGVMANVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGM 324

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N  TY+ LI+G C+ G    A+ L +EM     + GV    N VTYT ++DGLCKE  
Sbjct: 325 ALNEFTYTCLIDGTCKAGRLDDAIVLLDEMV----RQGV--PLNVVTYTVLVDGLCKERK 378

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           V +A+++   M+   +  + + Y +LIHG     +  +A  LL EM ++G++ D+  +  
Sbjct: 379 VAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLYGA 438

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           ++  LC   K+DEA  LL  M   G+ PN   ++T+MD    +G+V  A
Sbjct: 439 LIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDACFKSGKVPEA 487



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 98/293 (33%), Positives = 152/293 (51%), Gaps = 10/293 (3%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   + N +   LA+ +    V  LF++L +    P+++T+NI+I+  CK G ++    
Sbjct: 154 PPNTRTCNHILLRLARDRSGRLVRRLFEQLPA----PNVFTFNIVIDFLCKEGELAEARS 209

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           +  R+      PD V F SLI G      + E   L  +++  GCK +V+TY+ LIN  C
Sbjct: 210 LFSRMKEMGCLPDVVTFNSLIDGYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFC 269

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G    A   F  M     + GV+   N VT++T +D  CKEG V +A +LF QM+ + 
Sbjct: 270 KFGRMETAYGYFAAMK----REGVMA--NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRG 323

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           +  +  TY  LI G C A   ++A  LL EM+ QGV  +VVT+ V++D LCK  K+ EA 
Sbjct: 324 MALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQGVPLNVVTYTVLVDGLCKERKVAEAE 383

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +L +M   GV  N   ++TL+ G  +      A  L   M++ G +  +  Y
Sbjct: 384 DVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKALGLLSEMKNKGLELDISLY 436



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/220 (32%), Positives = 107/220 (48%), Gaps = 10/220 (4%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A    +L+  L     + +A     +++     PN  T + ++  L R     +   LFE
Sbjct: 122 ASVVDTLLSVLADRGLLDDAVRAVARVRELRVPPNTRTCNHILLRLARDRSGRLVRRLFE 181

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           ++            PN  T+  +ID LCKEG + +A+ LF +MK+    PDVVT+NSLI 
Sbjct: 182 QLP----------APNVFTFNIVIDFLCKEGELAEARSLFSRMKEMGCLPDVVTFNSLID 231

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           G+    + +E   L+ EM   G + DVVT+N +++  CK G+M+ A      M   GV  
Sbjct: 232 GYGKCGELDEVEQLVEEMRRSGCKADVVTYNALINCFCKFGRMETAYGYFAAMKREGVMA 291

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N  TFST +D FC  G V  A +LF  M   G     F+Y
Sbjct: 292 NVVTFSTFVDAFCKEGLVREAMKLFAQMRVRGMALNEFTY 331



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/379 (23%), Positives = 158/379 (41%), Gaps = 71/379 (18%)

Query: 65  SLEQFLKERCKSSGQGDITAITPN---EAFCIFDYM---------LNMRPSPPPLTSFNL 112
            +EQ ++E  +S  + D+  +T N     FC F  M         +        + +F+ 
Sbjct: 241 EVEQLVEEMRRSGCKADV--VTYNALINCFCKFGRMETAYGYFAAMKREGVMANVVTFST 298

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
                 K       + LF ++   G+  + +TY  LI+  CK GR+    V+L  ++R  
Sbjct: 299 FVDAFCKEGLVREAMKLFAQMRVRGMALNEFTYTCLIDGTCKAGRLDDAIVLLDEMVRQG 358

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
              + V +T L+ GLC E ++ EA  +   ++  G + N + Y+TLI+G     ++  AL
Sbjct: 359 VPLNVVTYTVLVDGLCKERKVAEAEDVLRMMEKAGVRANELLYTTLIHGHFMNKNSEKAL 418

Query: 233 NLFEEMANGNGKFGV---------VC--------------------KPNTVTYTTIIDGL 263
            L  EM N   +  +         +C                    +PN + YTT++D  
Sbjct: 419 GLLSEMKNKGLELDISLYGALIQGLCNVHKLDEAKSLLTKMDESGLEPNYIIYTTMMDAC 478

Query: 264 CKEGFV----------------------DKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
            K G V                      ++A +LF +M  K ++ D V Y +L+ G+   
Sbjct: 479 FKSGKVPEAIAMLQKILDSGFQPNNGCLNEAVQLFNEMVHKGMSLDKVVYTALLDGYLKQ 538

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
            + ++A  L  +M+D G+Q D+  +   +   C    M EA  +   MI  G+ P+ + +
Sbjct: 539 GNLHDAFALKAKMIDSGLQLDLFCYTCFISGFCNLNMMPEAREVFSEMIGHGIAPDRAVY 598

Query: 362 STLMDGFCLTGRVNHAKEL 380
           +      CL  ++   +EL
Sbjct: 599 N------CLITQIPEIREL 611


>gi|242041853|ref|XP_002468321.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
 gi|241922175|gb|EER95319.1| hypothetical protein SORBIDRAFT_01g043770 [Sorghum bicolor]
          Length = 794

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 89/290 (30%), Positives = 145/290 (50%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L + N++   L +    +  L   K +   GL PD+ TYN LI+ +CK   V+  FV++ 
Sbjct: 386 LVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVLMD 445

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++RS    D     +L+  LC E R  EA  L       G  P+ ++Y T++    +  
Sbjct: 446 EMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSYGTVMAAYFKEN 505

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               AL L++EM+           P+  TY T+I GLC  G + +A +   ++  K + P
Sbjct: 506 KPEPALYLWDEMSKRK------LTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVP 559

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D  TYN +IH +C   D  +A     +M++   +PDVVT N +M+ LC +GK+++A +L 
Sbjct: 560 DDTTYNIIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLF 619

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           E    +G   +  T++TL+   C  G V+ A   F  ME+ G +   F+Y
Sbjct: 620 ESWAEKGKKVDVITYNTLIQALCKDGDVDTALHFFADMEARGLQPDAFTY 669



 Score =  148 bits (373), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 98/351 (27%), Positives = 157/351 (44%), Gaps = 9/351 (2%)

Query: 46  PTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPP 105
           P   A+L  S R     R SL+         S      + +P  +  +F  ++ +R  P 
Sbjct: 153 PHLAAQLLHSFRRRGHVRPSLQA---ANAVLSALARSPSTSPQASLDVFRSLIALRLHPN 209

Query: 106 PLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
             T FNLL             LS    +   GL PD+ TYN L+   C+ G +     +L
Sbjct: 210 HYT-FNLLVHTHCSKGTLADALSTLSTMQGFGLSPDVVTYNTLLKAHCRKGMLGEARTLL 268

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
            R+ +    P    + +L+        I +A  +   + AFG +P++ TY+ L  GLC+ 
Sbjct: 269 ARMKKEGIAPTRATYNTLVSAYARLGWIKQATNVVEAMTAFGFEPDLWTYNVLAAGLCQA 328

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G    A  L +EM + +     +  P+ VTY T++D   K      A  L  +M+DK + 
Sbjct: 329 GKVDEAFKLKDEMEHLS-----IVSPDVVTYNTLVDACFKYQRSSDALNLLEEMRDKGVK 383

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
             +VT+N ++ G C      EA   L  M ++G+ PDV+T+N ++D  CK   + +A  L
Sbjct: 384 SSLVTHNIVVKGLCREGQLEEALGRLKMMTEEGLAPDVITYNTLIDAYCKARNVAKAFVL 443

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ M+  G+  +T T +TL+   C   R   A+EL  S    G      SY
Sbjct: 444 MDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAEELLRSPPQRGFVPDEVSY 494



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 144/293 (49%), Gaps = 7/293 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N L     +        +L  R+   G+ P   TYN L++ + ++G +     V
Sbjct: 243 PDVVTYNTLLKAHCRKGMLGEARTLLARMKKEGIAPTRATYNTLVSAYARLGWIKQATNV 302

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG-CKPNVITYSTLINGLC 223
           +  +    F PD   +  L  GLC   ++ EA  L  +++      P+V+TY+TL++   
Sbjct: 303 VEAMTAFGFEPDLWTYNVLAAGLCQAGKVDEAFKLKDEMEHLSIVSPDVVTYNTLVDACF 362

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           +   +  ALNL EEM +         K + VT+  ++ GLC+EG +++A      M ++ 
Sbjct: 363 KYQRSSDALNLLEEMRDKG------VKSSLVTHNIVVKGLCREGQLEEALGRLKMMTEEG 416

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           + PDV+TYN+LI  +C A +  +A  L+ EM+  G++ D  T N ++  LCK  + +EA 
Sbjct: 417 LAPDVITYNTLIDAYCKARNVAKAFVLMDEMVRSGLKMDTFTLNTLLYNLCKEKRYEEAE 476

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            LL     RG  P+  ++ T+M  +    +   A  L+  M       ++++Y
Sbjct: 477 ELLRSPPQRGFVPDEVSYGTVMAAYFKENKPEPALYLWDEMSKRKLTPSIYTY 529



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 140/297 (47%), Gaps = 17/297 (5%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P  A  ++D M + R   P + ++N L   L         +     L   GL PD  TYN
Sbjct: 507 PEPALYLWDEM-SKRKLTPSIYTYNTLIKGLCTIGKLTEAIDKLNELMKKGLVPDDTTYN 565

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I+I+ +CK G +   F    ++L + F PD V   +L+ GLC   ++ +A  LF      
Sbjct: 566 IIIHAYCKEGDLEKAFQFHNKMLENYFKPDVVTCNTLMNGLCLHGKLEKAIKLFESWAEK 625

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           G K +VITY+TLI  LC+ G    AL+ F +M A G        +P+  TY  ++  L +
Sbjct: 626 GKKVDVITYNTLIQALCKDGDVDTALHFFADMEARG-------LQPDAFTYNVVLSALSE 678

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTY---NSLIHGFCYANDWN-EANCLLIEMMDQGVQP 321
            G  ++A+ +  ++ +     +  +Y    S         D   +++C   E        
Sbjct: 679 AGRSEEAQNMLHKLDESGKLSERFSYPLIKSSAEEVKTGKDPEVKSDC---ESGGNAKGG 735

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC-LTGRVNHA 377
           D  ++N  + ELC  G++ EA  +L+ M+ +G++ ++ST+ TLM+G      R  HA
Sbjct: 736 DQESYNKSVKELCVGGQLKEAKAVLDEMMQKGMSVDSSTYITLMEGLIKRQKRQTHA 792


>gi|357116365|ref|XP_003559952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g28010-like [Brachypodium distachyon]
          Length = 627

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 101/297 (34%), Positives = 152/297 (51%), Gaps = 12/297 (4%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKH-YDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           +L+  PS     S+N +   L +     D  L L  R+ +    P   +Y  L+   C  
Sbjct: 68  LLSSLPSVRDAVSYNTVLAALCRQGGCLDAALFLL-RVMAHETRPTAVSYTTLMRALCAE 126

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
            R      +L  +  S   PD V + +LI+GLC  + + +A  L  ++   G +PNV+ Y
Sbjct: 127 RRTGQAVGLLRDMQASGVRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVY 186

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
           S L+ G C+ G       +FEEM+ G G      +P+ V YT +ID LC+EG V KA ++
Sbjct: 187 SCLLQGYCKAGRWECVSKVFEEMS-GRG-----IEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +M ++ + P+VVTYN LI+  C      EA  L   M+++GV  D VT+N ++  L  
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 336 NGKMDEASRLLELMILRG---VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
             +MDEA  LLE MI  G   V PN  TF++++ G C TGR+  A ++   M   GC
Sbjct: 301 VLEMDEAMGLLEEMI-HGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGC 356



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 125/222 (56%), Gaps = 8/222 (3%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           DAV++ +++  LC +   ++AA    ++ A   +P  ++Y+TL+  LC    T  A+ L 
Sbjct: 77  DAVSYNTVLAALCRQGGCLDAALFLLRVMAHETRPTAVSYTTLMRALCAERRTGQAVGLL 136

Query: 236 EEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSL 294
            +M A+G        +P+ VTY T+I GLC    VDKA EL  +M +  I P+VV Y+ L
Sbjct: 137 RDMQASG-------VRPDVVTYGTLIRGLCDAADVDKAVELLREMCESGIEPNVVVYSCL 189

Query: 295 IHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGV 354
           + G+C A  W   + +  EM  +G++PDVV +  ++D LC+ GK+ +A+++++ M+ RG+
Sbjct: 190 LQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQVMDKMMERGL 249

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            PN  T++ L++  C  G V  A  L  +M   G      +Y
Sbjct: 250 EPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTY 291



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 144/292 (49%), Gaps = 5/292 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  ++ L     K   ++ V  +F+ ++  G+ PD+  Y  LI+  C+ G+V     V
Sbjct: 181 PNVVVYSCLLQGYCKAGRWECVSKVFEEMSGRGIEPDVVMYTGLIDSLCREGKVKKATQV 240

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           + +++     P+ V +  LI  +C E  + EA +L   +   G   + +TY+TLI GL  
Sbjct: 241 MDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNMLEKGVALDAVTYNTLITGLSG 300

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A+ L EEM +G      + +PN VT+ ++I GLCK G + +A ++   M +   
Sbjct: 301 VLEMDEAMGLLEEMIHGE----TMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGC 356

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             ++VT+N LI G    +   +A  L+ EM   G++PD  T++++++  CK  ++D A  
Sbjct: 357 ACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAES 416

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           LL  M   G+ P    +  L+   C  G +  A+  F  M    CK  V +Y
Sbjct: 417 LLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFDEMHK-NCKLDVVAY 467



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 9/279 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGFVVL 165
            ++N L   L+     D  + L + +    T + P++ T+N +I+  CK GR+   F V 
Sbjct: 289 VTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVR 348

Query: 166 GRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
             +  +    + V F  LI GL    ++ +A  L  ++ + G +P+  TYS LING C+ 
Sbjct: 349 DMMAENGCACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKM 408

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
                A +L  +M     + G+  +P  V Y  ++  LC++G +++A+  F +M  KN  
Sbjct: 409 WQVDRAESLLSKMR----RDGI--EPELVHYIPLLAALCEQGMMEQARNFFDEMH-KNCK 461

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
            DVV Y+++IHG C   D   A   L  M+D+G+ PD VT++++++    +G +  A R+
Sbjct: 462 LDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERV 521

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L+ M   G  P+ + F +L+ G+   G      EL   M
Sbjct: 522 LKQMTASGFVPDVAVFDSLIKGYGAKGDTEKVLELIREM 560



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 99/375 (26%), Positives = 165/375 (44%), Gaps = 68/375 (18%)

Query: 68  QFLKERCKSSGQGDITAITPN--------EAFC----------IFDYMLNMRPSPPPLTS 109
           + L+E C+S        I PN        + +C          +F+ M + R   P +  
Sbjct: 169 ELLREMCES-------GIEPNVVVYSCLLQGYCKAGRWECVSKVFEEM-SGRGIEPDVVM 220

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +  L   L +         +  ++   GL P++ TYN+LIN  CK G V     +   +L
Sbjct: 221 YTGLIDSLCREGKVKKATQVMDKMMERGLEPNVVTYNVLINSMCKEGSVKEAMSLRNNML 280

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL--KAFGCKPNVITYSTLINGLCRTGH 227
                 DAV + +LI GL     + EA  L  ++       +PNV+T++++I+GLC+TG 
Sbjct: 281 EKGVALDAVTYNTLITGLSGVLEMDEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGR 340

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  + + MA  NG     C  N VT+  +I GL +   V KA EL  +M    + PD
Sbjct: 341 MRQAFQVRDMMAE-NG-----CACNLVTFNLLIGGLLRVHKVKKAMELMDEMASSGLEPD 394

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA----- 342
             TY+ LI+GFC     + A  LL +M   G++P++V +  ++  LC+ G M++A     
Sbjct: 395 SFTYSILINGFCKMWQVDRAESLLSKMRRDGIEPELVHYIPLLAALCEQGMMEQARNFFD 454

Query: 343 -----------------------------SRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
                                           L+ M+  G+ P++ T+S L++ F  +G 
Sbjct: 455 EMHKNCKLDVVAYSTMIHGACRLRDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGD 514

Query: 374 VNHAKELFVSMESMG 388
           +  A+ +   M + G
Sbjct: 515 LGAAERVLKQMTASG 529



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 78/298 (26%), Positives = 135/298 (45%), Gaps = 11/298 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPP-LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           +EA  + + M++      P + +FN +   L KT        +   +   G   +L T+N
Sbjct: 305 DEAMGLLEEMIHGETMVEPNVVTFNSVIHGLCKTGRMRQAFQVRDMMAENGCACNLVTFN 364

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI    ++ +V     ++  +  S   PD+  ++ LI G C   ++  A +L +K++  
Sbjct: 365 LLIGGLLRVHKVKKAMELMDEMASSGLEPDSFTYSILINGFCKMWQVDRAESLLSKMRRD 424

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G +P ++ Y  L+  LC  G    A N F+EM          CK + V Y+T+I G C+ 
Sbjct: 425 GIEPELVHYIPLLAALCEQGMMEQARNFFDEMHKN-------CKLDVVAYSTMIHGACRL 477

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
                A+E    M D+ + PD VTY+ LI+ F  + D   A  +L +M   G  PDV  F
Sbjct: 478 RDRKSAEEFLKHMLDEGLIPDSVTYSMLINMFANSGDLGAAERVLKQMTASGFVPDVAVF 537

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           + ++      G  ++   L+  M  + +  ++   ST+    CL    N  K L  S+
Sbjct: 538 DSLIKGYGAKGDTEKVLELIREMTAKDIALDSKIISTIYT--CLVAN-NEGKALLQSV 592


>gi|218200366|gb|EEC82793.1| hypothetical protein OsI_27555 [Oryza sativa Indica Group]
          Length = 325

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/243 (34%), Positives = 132/243 (54%), Gaps = 32/243 (13%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            LSLF R+       DL TYNI+I C  + G +   F  LGR++R+ +T  A+ F+ L+K
Sbjct: 84  ALSLFNRMPRA----DLCTYNIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPLLK 139

Query: 186 GLCAESRIMEAAAL-FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
           GLC + R  +A  +   ++ A GC PN  +Y+ L+ GLC    +  AL+L   M   + +
Sbjct: 140 GLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLLHTMMADDTR 199

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP------------------ 286
            G  C P+ V+YTT+I+GL +EG +DKA  LF +M D+ ++P                  
Sbjct: 200 GG--CPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITVGKVDDAMSQFDRL 257

Query: 287 -------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKM 339
                  D V + +LIHG C  + W++A  L +EM+ +G+ PD + FN +++ LCK G +
Sbjct: 258 ISEGLTPDGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPDTIFFNTLLNHLCKAGMV 317

Query: 340 DEA 342
             A
Sbjct: 318 TRA 320



 Score =  107 bits (268), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 75/255 (29%), Positives = 119/255 (46%), Gaps = 29/255 (11%)

Query: 82  ITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           + + +P  A  +F+ M         L ++N++ GC ++  H D   +   R+  TG    
Sbjct: 76  VASESPAVALSLFNRM-----PRADLCTYNIVIGCCSRAGHLDLAFAALGRVIRTGWTAQ 130

Query: 142 LYTYNILINCFCKMGRVSHGF-VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
             T++ L+   C   R S    + L R+     TP+A ++  L+KGLC E+R  +A  L 
Sbjct: 131 AITFSPLLKGLCHDKRTSDAMDIALRRMPALGCTPNAFSYNILLKGLCDENRSQQALHLL 190

Query: 201 TKLKA----FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN--------GKFGVV 248
             + A     GC P+V++Y+T+INGL R G    A  LF+EM +          GK    
Sbjct: 191 HTMMADDTRGGCPPDVVSYTTVINGLLREGQLDKAYCLFDEMLDQGMSPNCITVGKVDDA 250

Query: 249 CK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHG 297
                        P+ V + T+I GLC     DKA+EL ++M  + I PD + +N+L++ 
Sbjct: 251 MSQFDRLISEGLTPDGVVFRTLIHGLCACDKWDKAEELAVEMIGRGICPDTIFFNTLLNH 310

Query: 298 FCYANDWNEANCLLI 312
            C A     A   LI
Sbjct: 311 LCKAGMVTRAKTSLI 325



 Score = 41.6 bits (96), Expect = 0.61,   Method: Compositional matrix adjust.
 Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +E+  + + + ++  + D+ T+N+++    + G +D A   L  +I  G      TFS L
Sbjct: 78  SESPAVALSLFNRMPRADLCTYNIVIGCCSRAGHLDLAFAALGRVIRTGWTAQAITFSPL 137

Query: 365 MDGFCLTGRVNHAKELFV-SMESMGCKHTVFSY 396
           + G C   R + A ++ +  M ++GC    FSY
Sbjct: 138 LKGLCHDKRTSDAMDIALRRMPALGCTPNAFSY 170


>gi|449460383|ref|XP_004147925.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
 gi|449516585|ref|XP_004165327.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g09060-like [Cucumis sativus]
          Length = 701

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 175/366 (47%), Gaps = 46/366 (12%)

Query: 72  ERCKSSGQGDITAIT-------PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYD 124
           +RC  S    ++AI        P++A  +F  M+++    P + SFN +     ++  + 
Sbjct: 72  QRCTCSEDVALSAIKAYAKCSMPDQALNLFQNMVDIFGCNPGIRSFNSMLNAFIESNQWR 131

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
                F    + G+ P+L TYNILI   CK  +   G  +L  +  +   PD +++ +LI
Sbjct: 132 EAELFFTYFQTAGMSPNLQTYNILIKISCKKRQFEKGKGLLTWMFENGLNPDILSYGTLI 191

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
             L     +++A  LF ++   G  P+V+ Y+ LI+G  R G  + A  +++ +   +  
Sbjct: 192 NALAKSGNLLDAVELFDEMSVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSV 251

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           +     P+  TY  +I+GLCK G +D++ E++ +MK    +PD+ T++S+IHG   A ++
Sbjct: 252 Y-----PSVETYNIMINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNF 306

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL------------------- 345
           N A  +  EM++ G+ PDV T+N ++  L + GK+++   L                   
Sbjct: 307 NAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNNCCNIVSYNMLI 366

Query: 346 ---------------LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
                           +L+  RG+  +++T+  L++G C  G +N A  +    E+ G  
Sbjct: 367 QGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGAD 426

Query: 391 HTVFSY 396
              F+Y
Sbjct: 427 LDTFAY 432



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 87/320 (27%), Positives = 161/320 (50%), Gaps = 42/320 (13%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L +F+ +   L+K  +++    +F+ +  +GL PD+ TYN +++   + G+++  F  
Sbjct: 288 PDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESGLSPDVRTYNAMLSGLFRTGKLNKCFE- 346

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++      + V++  LI+GL    ++ +A   +  L   G K +  TY  LINGLC+
Sbjct: 347 LWNVMSKNNCCNIVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCK 406

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMK---- 280
            G+   AL + EE  N           +T  Y++++ GLCK+G +++A EL  QMK    
Sbjct: 407 NGYLNKALRILEEAENEGADL------DTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRR 460

Query: 281 -------------------------------DKNINPDVVTYNSLIHGFCYANDWNEANC 309
                                           K+  P VV+YN++I+G C A  +++A  
Sbjct: 461 KLNSHVFNSLINGYVRAFKLEEAISVLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYL 520

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            L EM+++G++PD++T+++++D LC+  K+D A  L    I + + P+    + ++ G C
Sbjct: 521 SLKEMLEEGLKPDMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLC 580

Query: 370 LTGRVNHAKELFVSMESMGC 389
              +V+ A E+F  M  + C
Sbjct: 581 TAQKVDVALEIFTQMRQVNC 600



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 153/304 (50%), Gaps = 9/304 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG +      +A C +  +L+ R      T++ LL   L K  + +  L + +   + G 
Sbjct: 367 QGLLDNKKVEQAICYWQ-LLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGA 425

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
             D + Y+ +++  CK G +     ++ ++ ++    ++  F SLI G     ++ EA +
Sbjct: 426 DLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAIS 485

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGH-TIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
           +  ++K+  C P V++Y+T+INGLC+    +   L+L E +  G        KP+ +TY+
Sbjct: 486 VLREMKSKDCAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEG-------LKPDMITYS 538

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            +IDGLC+   VD A  L+ Q  +K + PD+  +N +IHG C A   + A  +  +M   
Sbjct: 539 LLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIFTQMRQV 598

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
              PD+VT N IM+ L K G   EA ++ + ++  G+ P+  +++    G C   RV+ A
Sbjct: 599 NCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISYNITFKGLCSCARVSDA 658

Query: 378 KELF 381
            E  
Sbjct: 659 IEFL 662



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/309 (27%), Positives = 153/309 (49%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNI 147
           +A  +FD M ++R   P +  +N+L     +   +     ++KRL   + ++P + TYNI
Sbjct: 202 DAVELFDEM-SVRGVNPDVMCYNILIDGFLRKGDFVKANEIWKRLLTESSVYPSVETYNI 260

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           +IN  CK+G++     +  R+ ++  +PD   F+S+I GL        A  +F ++   G
Sbjct: 261 MINGLCKLGKLDESMEMWNRMKKNEKSPDLFTFSSMIHGLSKAGNFNAAEKVFQEMIESG 320

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+V TY+ +++GL RTG       L+  M+  N      C  N V+Y  +I GL    
Sbjct: 321 LSPDVRTYNAMLSGLFRTGKLNKCFELWNVMSKNN-----CC--NIVSYNMLIQGLLDNK 373

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A   +  + ++ +  D  TY  LI+G C     N+A  +L E  ++G   D   ++
Sbjct: 374 KVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILEEAENEGADLDTFAYS 433

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++  LCK G +++A  L+  M       N+  F++L++G+    ++  A  +   M+S 
Sbjct: 434 SMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAFKLEEAISVLREMKSK 493

Query: 388 GCKHTVFSY 396
            C  TV SY
Sbjct: 494 DCAPTVVSY 502



 Score =  128 bits (321), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 83/292 (28%), Positives = 143/292 (48%), Gaps = 10/292 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S+N+L   L   K  +  +  ++ L+  GL  D  TY +LIN  CK G ++    +L 
Sbjct: 359 IVSYNMLIQGLLDNKKVEQAICYWQLLHERGLKADSTTYGLLINGLCKNGYLNKALRILE 418

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
                    D  A++S++ GLC +  + +A  L  ++K    K N   +++LING  R  
Sbjct: 419 EAENEGADLDTFAYSSMVHGLCKKGMLEQAVELIHQMKKNRRKLNSHVFNSLINGYVRAF 478

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+++  EM + +      C P  V+Y TII+GLCK      A     +M ++ + P
Sbjct: 479 KLEEAISVLREMKSKD------CAPTVVSYNTIINGLCKAERFSDAYLSLKEMLEEGLKP 532

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D++TY+ LI G C     + A  L  + +++ ++PD+   N+I+  LC   K+D A  + 
Sbjct: 533 DMITYSLLIDGLCRGEKVDMALNLWHQCINKRLKPDLQMHNIIIHGLCTAQKVDVALEIF 592

Query: 347 ELMILRGVN--PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  R VN  P+  T +T+M+G    G    A +++  +   G +  + SY
Sbjct: 593 TQM--RQVNCVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGLQPDIISY 642



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/118 (25%), Positives = 52/118 (44%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L   N++   L   +  D  L +F ++      PDL T+N ++    K G       +
Sbjct: 567 PDLQMHNIIIHGLCTAQKVDVALEIFTQMRQVNCVPDLVTHNTIMEGLYKAGDCVEALKI 626

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             RIL +   PD +++    KGLC+ +R+ +A          G  PN  T++ L+  +
Sbjct: 627 WDRILEAGLQPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAV 684



 Score = 45.4 bits (106), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
            G  TA   + A  IF  M  +    P L + N +   L K       L ++ R+   GL
Sbjct: 577 HGLCTAQKVDVALEIFTQMRQVN-CVPDLVTHNTIMEGLYKAGDCVEALKIWDRILEAGL 635

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
            PD+ +YNI     C   RVS     L   L     P+A  +  L++ +  +  +ME A
Sbjct: 636 QPDIISYNITFKGLCSCARVSDAIEFLYDALDRGILPNAPTWNVLVRAVVDDKPLMEYA 694


>gi|334186712|ref|NP_001190774.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|223635614|sp|P0C8Q3.1|PP326_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g19890
 gi|332658842|gb|AEE84242.1| Pentatricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 701

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/300 (32%), Positives = 157/300 (52%), Gaps = 14/300 (4%)

Query: 93  IFDYMLNMRPSPPPLTSFNLL-FGCL--AKTKHYDTVLS-LFKRLNSTGLFPDLYTYNIL 148
           +FD M ++R   P  +S+ L+  GC    K +  D  L+ + +R    G  PD  T  ++
Sbjct: 204 VFDEM-SVRGVVPDSSSYKLMVIGCFRDGKIQEADRWLTGMIQR----GFIPDNATCTLI 258

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +   C+ G V+       +++   F P+ + FTSLI GLC +  I +A  +  ++   G 
Sbjct: 259 LTALCENGLVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGW 318

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KPNV T++ LI+GLC+ G T  A  LF ++   +       KPN  TYT++I G CKE  
Sbjct: 319 KPNVYTHTALIDGLCKRGWTEKAFRLFLKLVRSD-----TYKPNVHTYTSMIGGYCKEDK 373

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A+ LF +MK++ + P+V TY +LI+G C A  +  A  L+  M D+G  P++ T+N 
Sbjct: 374 LNRAEMLFSRMKEQGLFPNVNTYTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNA 433

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +D LCK  +  EA  LL      G+  +  T++ L+   C    +N A   F  M   G
Sbjct: 434 AIDSLCKKSRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTG 493



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 96/310 (30%), Positives = 153/310 (49%), Gaps = 8/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           N A   F  M+++    P L +F  L   L K         + + +   G  P++YT+  
Sbjct: 269 NRAIWYFRKMIDL-GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHTA 327

Query: 148 LINCFCKMGRVSHGFVVLGRILRS-CFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           LI+  CK G     F +  +++RS  + P+   +TS+I G C E ++  A  LF+++K  
Sbjct: 328 LIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQ 387

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G  PNV TY+TLING C+ G    +     E+ N  G  G +  PN  TY   ID LCK+
Sbjct: 388 GLFPNVNTYTTLINGHCKAG----SFGRAYELMNLMGDEGFM--PNIYTYNAAIDSLCKK 441

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
               +A EL  +     +  D VTY  LI   C  ND N+A      M   G + D+   
Sbjct: 442 SRAPEAYELLNKAFSCGLEADGVTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLN 501

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           N+++   C+  KM E+ RL +L++  G+ P   T+++++  +C  G ++ A + F +M+ 
Sbjct: 502 NILIAAFCRQKKMKESERLFQLVVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKR 561

Query: 387 MGCKHTVFSY 396
            GC    F+Y
Sbjct: 562 HGCVPDSFTY 571



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 155/314 (49%), Gaps = 15/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  +   M N   +P  +T  N +     +    +   ++F  ++  G+ PD  +Y +
Sbjct: 164 NEAVGMVMDMQNQGLTPSSIT-MNCVLEIAVELGLIEYAENVFDEMSVRGVVPDSSSYKL 222

Query: 148 L-INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           + I CF + G++      L  +++  F PD    T ++  LC    +  A   F K+   
Sbjct: 223 MVIGCF-RDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYFRKMIDL 281

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
           G KPN+I +++LI+GLC+ G    A  + EEM   NG      KPN  T+T +IDGLCK 
Sbjct: 282 GFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVR-NG-----WKPNVYTHTALIDGLCKR 335

Query: 267 GFVDKAKELFLQM-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           G+ +KA  LFL++ +     P+V TY S+I G+C  +  N A  L   M +QG+ P+V T
Sbjct: 336 GWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKEQGLFPNVNT 395

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF---- 381
           +  +++  CK G    A  L+ LM   G  PN  T++  +D  C   R   A EL     
Sbjct: 396 YTTLINGHCKAGSFGRAYELMNLMGDEGFMPNIYTYNAAIDSLCKKSRAPEAYELLNKAF 455

Query: 382 -VSMESMGCKHTVF 394
              +E+ G  +T+ 
Sbjct: 456 SCGLEADGVTYTIL 469



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/250 (26%), Positives = 122/250 (48%), Gaps = 7/250 (2%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           ++  F ++GR++    ++  +     TP ++    +++       I  A  +F ++   G
Sbjct: 153 MLRNFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRG 212

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  +Y  ++ G  R G    A    +    G  + G +  P+  T T I+  LC+ G
Sbjct: 213 VVPDSSSYKLMVIGCFRDGKIQEA----DRWLTGMIQRGFI--PDNATCTLILTALCENG 266

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A   F +M D    P+++ + SLI G C      +A  +L EM+  G +P+V T  
Sbjct: 267 LVNRAIWYFRKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTHT 326

Query: 328 VIMDELCKNGKMDEASRL-LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            ++D LCK G  ++A RL L+L+      PN  T+++++ G+C   ++N A+ LF  M+ 
Sbjct: 327 ALIDGLCKRGWTEKAFRLFLKLVRSDTYKPNVHTYTSMIGGYCKEDKLNRAEMLFSRMKE 386

Query: 387 MGCKHTVFSY 396
            G    V +Y
Sbjct: 387 QGLFPNVNTY 396



 Score = 83.6 bits (205), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 15/230 (6%)

Query: 182 SLIKGLCAESRIMEA------AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV--ALN 233
           +++  L +ES  M A      A  F K + F     V   S L NG  +  H ++   L 
Sbjct: 96  TVVASLASESGSMVALCFFYWAVGFEKFRHFMRLYLVTADSLLANGNLQKAHEVMRCMLR 155

Query: 234 LFEEMANGNGKFGVVCK-------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
            F E+   N   G+V         P+++T   +++   + G ++ A+ +F +M  + + P
Sbjct: 156 NFSEIGRLNEAVGMVMDMQNQGLTPSSITMNCVLEIAVELGLIEYAENVFDEMSVRGVVP 215

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D  +Y  ++ G        EA+  L  M+ +G  PD  T  +I+  LC+NG ++ A    
Sbjct: 216 DSSSYKLMVIGCFRDGKIQEADRWLTGMIQRGFIPDNATCTLILTALCENGLVNRAIWYF 275

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             MI  G  PN   F++L+DG C  G +  A E+   M   G K  V+++
Sbjct: 276 RKMIDLGFKPNLINFTSLIDGLCKKGSIKQAFEMLEEMVRNGWKPNVYTH 325



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 103/248 (41%), Gaps = 12/248 (4%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++ +L     K    +  L+ F R+N TG   D+   NILI  FC+  ++     +   
Sbjct: 464 VTYTILIQEQCKQNDINQALAFFCRMNKTGFEADMRLNNILIAAFCRQKKMKESERLFQL 523

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P    +TS+I   C E  I  A   F  +K  GC P+  TY +LI+GLC+   
Sbjct: 524 VVSLGLIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYGSLISGLCKKSM 583

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL-FLQMKDKNINP 286
              A  L+E M +          P  VT  T+    CK    D A  +  L+  DK +  
Sbjct: 584 VDEACKLYEAMIDRG------LSPPEVTRVTLAYEYCKRN--DSANAMILLEPLDKKLW- 634

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            + T  +L+   C       A     +++++    D VT         ++GK +  + L 
Sbjct: 635 -IRTVRTLVRKLCSEKKVGVAALFFQKLLEKDSSADRVTLAAFTTACSESGKNNLVTDLT 693

Query: 347 ELMILRGV 354
           E  I RGV
Sbjct: 694 E-RISRGV 700



 Score = 43.9 bits (102), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 74/215 (34%), Gaps = 45/215 (20%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++  +  C  K    D  L  F  +   G  PD +TY                   
Sbjct: 531 PTKETYTSMISCYCKEGDIDLALKYFHNMKRHGCVPDSFTYG------------------ 572

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
                            SLI GLC +S + EA  L+  +   G  P  +T  TL    C+
Sbjct: 573 -----------------SLISGLCKKSMVDEACKLYEAMIDRGLSPPEVTRVTLAYEYCK 615

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
              +  A+ L E +           K    T  T++  LC E  V  A   F ++ +K+ 
Sbjct: 616 RNDSANAMILLEPLDK---------KLWIRTVRTLVRKLCSEKKVGVAALFFQKLLEKDS 666

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + D VT  +     C  +  N     L E + +GV
Sbjct: 667 SADRVTLAAFTTA-CSESGKNNLVTDLTERISRGV 700


>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
 gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
 gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 166/340 (48%), Gaps = 31/340 (9%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P++A  +F  M  +    P + S+N L     + K +  V SLF    + G+ P+L TYN
Sbjct: 94  PDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI   CK          L  + +  F PD  +++++I  L    ++ +A  LF ++   
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEE----------------MANGNGKFGVV-- 248
           G  P+V  Y+ LI+G  +      A+ L++                 M +G  K G V  
Sbjct: 214 GVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDD 273

Query: 249 C------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           C            + +  TY+++I GLC  G VDKA+ +F ++ ++  + DVVTYN+++ 
Sbjct: 274 CLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLG 333

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
           GFC      E+   L  +M+     ++V++N+++  L +NGK+DEA+ +  LM  +G   
Sbjct: 334 GFCRCGKIKES-LELWRIMEHKNSVNIVSYNILIKGLLENGKIDEATMIWRLMPAKGYAA 392

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + +T+   + G C+ G VN A  +   +ES G    V++Y
Sbjct: 393 DKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAY 432



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/310 (30%), Positives = 155/310 (50%), Gaps = 9/310 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYN 146
           ++A  +FD M + R   P +T +N+L     K K + T + L+ RL   + ++P++ T+N
Sbjct: 201 DDALELFDEM-SERGVAPDVTCYNILIDGFLKEKDHKTAMELWDRLLEDSSVYPNVKTHN 259

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           I+I+   K GRV     +  R+ ++    D   ++SLI GLC    + +A ++F +L   
Sbjct: 260 IMISGLSKCGRVDDCLKIWERMKQNEREKDLYTYSSLIHGLCDAGNVDKAESVFNELDER 319

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
               +V+TY+T++ G CR G    +L L+  M + N         N V+Y  +I GL + 
Sbjct: 320 KASIDVVTYNTMLGGFCRCGKIKESLELWRIMEHKNS-------VNIVSYNILIKGLLEN 372

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
           G +D+A  ++  M  K    D  TY   IHG C     N+A  ++ E+   G   DV  +
Sbjct: 373 GKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAY 432

Query: 327 NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             I+D LCK  +++EAS L++ M   GV  N+   + L+ G     R+  A      M  
Sbjct: 433 ASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGK 492

Query: 387 MGCKHTVFSY 396
            GC+ TV SY
Sbjct: 493 NGCRPTVVSY 502



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 80/289 (27%), Positives = 148/289 (51%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T++ +    L    + +  L + + + S+G   D+Y Y  +I+C CK  R+     ++  
Sbjct: 395 TTYGIFIHGLCVNGYVNKALGVMQEVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKE 454

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           + +     ++    +LI GL  +SR+ EA+    ++   GC+P V++Y+ LI GLC+ G 
Sbjct: 455 MSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREMGKNGCRPTVVSYNILICGLCKAGK 514

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A    +EM   NG      KP+  TY+ ++ GLC++  +D A EL+ Q     +  D
Sbjct: 515 FGEASAFVKEMLE-NG-----WKPDLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETD 568

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
           V+ +N LIHG C     ++A  ++  M  +    ++VT+N +M+   K G  + A+ +  
Sbjct: 569 VMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWG 628

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M   G+ P+  +++T+M G C+   V++A E F    + G   TV+++
Sbjct: 629 YMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTW 677



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 138/290 (47%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S+N+L   L +    D    +++ + + G   D  TY I I+  C  G V+    V+ 
Sbjct: 359 IVSYNILIKGLLENGKIDEATMIWRLMPAKGYAADKTTYGIFIHGLCVNGYVNKALGVMQ 418

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +  S    D  A+ S+I  LC + R+ EA+ L  ++   G + N    + LI GL R  
Sbjct: 419 EVESSGGHLDVYAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDS 478

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A     EM    GK G  C+P  V+Y  +I GLCK G   +A     +M +    P
Sbjct: 479 RLGEASFFLREM----GKNG--CRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKP 532

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D+ TY+ L+ G C     + A  L  + +  G++ DV+  N+++  LC  GK+D+A  ++
Sbjct: 533 DLKTYSILLCGLCRDRKIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVM 592

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M  R    N  T++TLM+GF   G  N A  ++  M  MG +  + SY
Sbjct: 593 ANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISY 642



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/257 (27%), Positives = 122/257 (47%), Gaps = 6/257 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++  +  CL K K  +   +L K ++  G+  + +  N LI    +  R+      L  +
Sbjct: 431 AYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLREM 490

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++   P  V++  LI GLC   +  EA+A   ++   G KP++ TYS L+ GLCR    
Sbjct: 491 GKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKI 550

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
            +AL L+ +            + + + +  +I GLC  G +D A  +   M+ +N   ++
Sbjct: 551 DLALELWHQFLQSG------LETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANL 604

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VTYN+L+ GF    D N A  +   M   G+QPD++++N IM  LC    +  A    + 
Sbjct: 605 VTYNTLMEGFFKVGDSNRATVIWGYMYKMGLQPDIISYNTIMKGLCMCRGVSYAMEFFDD 664

Query: 349 MILRGVNPNTSTFSTLM 365
               G+ P   T++ L+
Sbjct: 665 ARNHGIFPTVYTWNILV 681



 Score = 89.4 bits (220), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/193 (27%), Positives = 94/193 (48%), Gaps = 6/193 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S+N+L   L K   +    +  K +   G  PDL TY+IL+   C+  ++     +
Sbjct: 497 PTVVSYNILICGLCKAGKFGEASAFVKEMLENGWKPDLKTYSILLCGLCRDRKIDLALEL 556

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             + L+S    D +    LI GLC+  ++ +A  +   ++   C  N++TY+TL+ G  +
Sbjct: 557 WHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFK 616

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G +  A  ++  M     K G+  +P+ ++Y TI+ GLC    V  A E F   ++  I
Sbjct: 617 VGDSNRATVIWGYMY----KMGL--QPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGI 670

Query: 285 NPDVVTYNSLIHG 297
            P V T+N L+  
Sbjct: 671 FPTVYTWNILVRA 683



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 101/209 (48%), Gaps = 5/209 (2%)

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           +   AV +  +++ L     +   + +   +++  CK +     ++I    +      AL
Sbjct: 39  YAHSAVVYHHILRRLSETRMVNHVSRIVELIRSQECKCDEDVALSVIKTYGKNSMPDQAL 98

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
           ++F+ M    G     C+P   +Y T+++   +     K + LF   +   + P++ TYN
Sbjct: 99  DVFKRMREIFG-----CEPAIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYN 153

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            LI   C   ++ +A   L  M  +G +PDV +++ ++++L K GK+D+A  L + M  R
Sbjct: 154 VLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSER 213

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           GV P+ + ++ L+DGF        A EL+
Sbjct: 214 GVAPDVTCYNILIDGFLKEKDHKTAMELW 242



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 73/149 (48%), Gaps = 1/149 (0%)

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK-NINPDVVTYNSLIHGFCYANDWNEA 307
           CK +     ++I    K    D+A ++F +M++     P + +YN+L++ F  A  W + 
Sbjct: 74  CKCDEDVALSVIKTYGKNSMPDQALDVFKRMREIFGCEPAIRSYNTLLNAFVEAKQWVKV 133

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L       GV P++ T+NV++   CK  + ++A   L+ M   G  P+  ++ST+++ 
Sbjct: 134 ESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVIND 193

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               G+++ A ELF  M   G    V  Y
Sbjct: 194 LAKAGKLDDALELFDEMSERGVAPDVTCY 222



 Score = 52.0 bits (123), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/112 (24%), Positives = 51/112 (45%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           N+L   L      D  +++   +       +L TYN L+  F K+G  +   V+ G + +
Sbjct: 573 NILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYNTLMEGFFKVGDSNRATVIWGYMYK 632

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
               PD +++ +++KGLC    +  A   F   +  G  P V T++ L+  +
Sbjct: 633 MGLQPDIISYNTIMKGLCMCRGVSYAMEFFDDARNHGIFPTVYTWNILVRAV 684


>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 566

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 14/305 (4%)

Query: 94  FDYMLNMRPSPPPLTSFNLL--FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
            +YM N    P  +    L+  F  + +TK+   ++ +   L  +G   D  +YN+LIN 
Sbjct: 92  LEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGI---LEESGAVIDANSYNVLINA 148

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           +CK G +     VL     +   P+A  + +++  LC   ++ +A  +  +     C P+
Sbjct: 149 YCKSGEIEEALRVLDH---TSVAPNAATYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPD 205

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
           V+T + LI+  C+      A+ LF EM  G G     CKP+ VTY  +I G CKEG +D+
Sbjct: 206 VVTCTVLIDATCKESGVGQAMKLFNEM-RGKG-----CKPDVVTYNVLIKGFCKEGRLDE 259

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           A     ++       DV+++N ++   C    W +A  LL  M+ +G  P VVTFN++++
Sbjct: 260 AIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILIN 319

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LC+ G + +A  +LE+M   G  PN+ +F+ L+ GFC    ++ A E    M S GC  
Sbjct: 320 FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYP 379

Query: 392 TVFSY 396
            + +Y
Sbjct: 380 DIVTY 384



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 156/337 (46%), Gaps = 30/337 (8%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D  L  +  P  +T   +L     K       + LF  +   G  PD+ TYN+L
Sbjct: 189 QAMQVLDRQLQSKCYPDVVTC-TVLIDATCKESGVGQAMKLFNEMRGKGCKPDVVTYNVL 247

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I  FCK GR+    + L ++       D ++   +++ LC+  R M+A  L   +   GC
Sbjct: 248 IKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRWMDAMKLLATMLRKGC 307

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-------------------ANGNGKFGVV- 248
            P+V+T++ LIN LC+ G    ALN+ E M                    N  G    + 
Sbjct: 308 FPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIE 367

Query: 249 ---------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                    C P+ VTY  ++  LCK+G VD A  +  Q+  K  +P +++YN++I G  
Sbjct: 368 HLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 427

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
                  A  LL EM  +G++PD++T   ++  L + GK+ EA +    +   G+ PN  
Sbjct: 428 KVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAF 487

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            ++++M G C   + + A +  V M + GCK T  SY
Sbjct: 488 IYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASY 524



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 135/282 (47%), Gaps = 6/282 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S N++   L     +   + L   +   G FP + T+NILIN  C+ G +     VL 
Sbjct: 276 VISHNMILRSLCSGGRWMDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLE 335

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + +   TP++ +F  LI+G C    I  A      + + GC P+++TY+ L+  LC+ G
Sbjct: 336 MMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDG 395

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +  ++++        C P+ ++Y T+IDGL K G  + A EL  +M  K + P
Sbjct: 396 KVDDAVVILSQLSSKG------CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKP 449

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D++T  S++ G       +EA      +   G++P+   +N IM  LCK  +   A   L
Sbjct: 450 DLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFL 509

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             M+  G  P  ++++TL+ G    G    A +L   + S G
Sbjct: 510 VDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRG 551



 Score =  123 bits (309), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/251 (28%), Positives = 131/251 (52%), Gaps = 8/251 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN+L   L +       L++ + +   G  P+  ++N LI  FC    +      
Sbjct: 309 PSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEH 368

Query: 165 LGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
           L  ++ R C+ PD V +  L+  LC + ++ +A  + ++L + GC P++I+Y+T+I+GL 
Sbjct: 369 LEIMVSRGCY-PDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLL 427

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + G   +A+ L EEM           KP+ +T T+++ GL +EG V +A + F  +K   
Sbjct: 428 KVGKAELAVELLEEMCYKG------LKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFG 481

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
           I P+   YNS++ G C A   + A   L++M+  G +P   ++  ++  +   G  +EAS
Sbjct: 482 IKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGITYEGLAEEAS 541

Query: 344 RLLELMILRGV 354
           +L   +  RG+
Sbjct: 542 KLSNELYSRGL 552



 Score =  102 bits (255), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 108/238 (45%), Gaps = 9/238 (3%)

Query: 97  MLNMRPS---PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFC 153
           +L M P     P   SFN L       K  D  +   + + S G +PD+ TYNIL+   C
Sbjct: 333 VLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALC 392

Query: 154 KMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVI 213
           K G+V    V+L ++     +P  +++ ++I GL    +   A  L  ++   G KP++I
Sbjct: 393 KDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLI 452

Query: 214 TYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAK 273
           T ++++ GL R G    A+  F  +      FG+  KPN   Y +I+ GLCK      A 
Sbjct: 453 TCTSVVGGLSREGKVHEAIKFFHYLKG----FGI--KPNAFIYNSIMMGLCKAQQTSLAI 506

Query: 274 ELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
           +  + M      P   +Y +LI G  Y     EA+ L  E+  +G+    +   V  D
Sbjct: 507 DFLVDMVANGCKPTEASYTTLIKGITYEGLAEEASKLSNELYSRGLVKKSLIVKVSQD 564



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/119 (26%), Positives = 60/119 (50%), Gaps = 3/119 (2%)

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L + G +++       M +K   PDVV   +LI  FC       A  ++  + + G   D
Sbjct: 79  LIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVID 138

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
             ++NV+++  CK+G+++EA R+L+      V PN +T+  ++   C  G++  A ++ 
Sbjct: 139 ANSYNVLINAYCKSGEIEEALRVLDHT---SVAPNAATYDAVLCSLCDRGKLKQAMQVL 194



 Score = 40.0 bits (92), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            L +NG+++E SR LE M  +G  P+    + L+  FC  GR  +A  +   +E  G   
Sbjct: 78  RLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIREFCKIGRTKNATRIMGILEESGAVI 137

Query: 392 TVFSY 396
              SY
Sbjct: 138 DANSY 142


>gi|224086982|ref|XP_002308024.1| predicted protein [Populus trichocarpa]
 gi|222854000|gb|EEE91547.1| predicted protein [Populus trichocarpa]
          Length = 789

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 99/322 (30%), Positives = 163/322 (50%), Gaps = 34/322 (10%)

Query: 88  NEAFCIF------DYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPD 141
           +EAF +        Y+L++R        ++ L   L + K Y+ V  L++++    + PD
Sbjct: 283 DEAFSLLRLFEKDGYVLDVR-------GYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPD 335

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFT 201
           +Y Y I++    + G+V     +L  +  S   PD V +  LIKG C    + EA +L  
Sbjct: 336 VYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSLQL 395

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           ++    C PNV TYS LI+G+CR G T  A  +F EM     K G  C P+ VT+ ++ID
Sbjct: 396 EISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEME----KLG--CYPSAVTFNSLID 449

Query: 262 GLCKEGFVDKAKELFLQMKDKNINP--------------DVVTYNSLIHGFCYANDWNEA 307
           GLCK G ++KA  LF +M+    NP              D  +   ++   C +   ++A
Sbjct: 450 GLCKTGQLEKAHLLFYKMEIGR-NPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKA 508

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +L+++ D G  P + T+N++++  CK G  + A +L   M  +G++P+T T+ TL++G
Sbjct: 509 YRILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLING 568

Query: 368 FCLTGRVNHAKELFVSMESMGC 389
                R   A ++F  ME  GC
Sbjct: 569 LLRFQREEDAYKVFDQMEKNGC 590



 Score =  150 bits (378), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 89/281 (31%), Positives = 140/281 (49%), Gaps = 6/281 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +F++L   L K+ +    L LF  +   G+ PD +TY ++I+  C+  RV   + +
Sbjct: 194 PNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGLCRSKRVDDAYRL 253

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++  S   PD V   +L+ G C   R+ EA +L    +  G   +V  YS LI GL R
Sbjct: 254 FDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFR 313

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                    L+ +M   N       KP+   YT ++ GL + G V  A EL  +M +  +
Sbjct: 314 AKRYEDVQLLYRKMIEDN------VKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGV 367

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD V YN LI GFC     +EA  L +E+      P+V T+++++  +C+NG   +A  
Sbjct: 368 VPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQE 427

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +   M   G  P+  TF++L+DG C TG++  A  LF  ME
Sbjct: 428 IFNEMEKLGCYPSAVTFNSLIDGLCKTGQLEKAHLLFYKME 468



 Score =  142 bits (357), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 80/287 (27%), Positives = 143/287 (49%), Gaps = 9/287 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  + ++   LA+       L L   +  +G+ PD   YN+LI  FC MG +S    +
Sbjct: 334 PDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEARSL 393

Query: 165 LGRILR-SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
              I R  CF P+   ++ LI G+C      +A  +F +++  GC P+ +T+++LI+GLC
Sbjct: 394 QLEISRHDCF-PNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGLC 452

Query: 224 RTGHTIVALNLFEEMANGNG-------KFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           +TG    A  LF +M  G           G     ++ +   +++ LC  G + KA  + 
Sbjct: 453 KTGQLEKAHLLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYRIL 512

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
           +Q+ D    P + TYN L++GFC   ++N A  L  EM  +G+ PD VT+  +++ L + 
Sbjct: 513 MQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRF 572

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            + ++A ++ + M   G  P+ + + T+M   C    +  A  L++ 
Sbjct: 573 QREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWLK 619



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 96/352 (27%), Positives = 154/352 (43%), Gaps = 45/352 (12%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
            +A  +FD M   R   P   ++ ++   L ++K  D    LF ++  +G+ PD  T N 
Sbjct: 213 KDALHLFDEM-TQRGILPDAFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNA 271

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+N FC + RV   F +L    +  +  D   ++ LI+GL    R  +   L+ K+    
Sbjct: 272 LLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGYSCLIRGLFRAKRYEDVQLLYRKMIEDN 331

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMAN---------------GNGKFGVV---- 248
            KP+V  Y+ ++ GL   G    AL L  EM                 G    G++    
Sbjct: 332 VKPDVYLYTIMMKGLAEAGKVRDALELLNEMTESGVVPDTVCYNVLIKGFCDMGLLSEAR 391

Query: 249 ----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
                     C PN  TY+ +I G+C+ G    A+E+F +M+     P  VT+NSLI G 
Sbjct: 392 SLQLEISRHDCFPNVKTYSILISGMCRNGLTRDAQEIFNEMEKLGCYPSAVTFNSLIDGL 451

Query: 299 CYANDWNEANCLLIEMMDQGVQP--------------DVVTFNVIMDELCKNGKMDEASR 344
           C      +A+ LL   M+ G  P              D  +   ++++LC +G + +A R
Sbjct: 452 CKTGQLEKAH-LLFYKMEIGRNPSLFLRLSQGPSHVLDSASLQKMVEQLCDSGLIHKAYR 510

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L  +   G  P   T++ L++GFC  G  N A +LF  M+  G      +Y
Sbjct: 511 ILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTY 562



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 140/285 (49%), Gaps = 41/285 (14%)

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
           +LI  + KMG         G +     TPD   +  ++  L  ++ ++ A  ++T++   
Sbjct: 131 VLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRMMKL 190

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            C PNV T+S LI+GLC++G+   AL+LF+EM     + G++  P+  TY  +I GLC+ 
Sbjct: 191 NCLPNVATFSILIDGLCKSGNVKDALHLFDEMT----QRGIL--PDAFTYCVVISGLCRS 244

Query: 267 GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL--------------- 311
             VD A  LF +MKD  + PD VT N+L++GFC  +  +EA  LL               
Sbjct: 245 KRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDVRGY 304

Query: 312 --------------------IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
                                +M++  V+PDV  + ++M  L + GK+ +A  LL  M  
Sbjct: 305 SCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLYTIMMKGLAEAGKVRDALELLNEMTE 364

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            GV P+T  ++ L+ GFC  G ++ A+ L + +    C   V +Y
Sbjct: 365 SGVVPDTVCYNVLIKGFCDMGLLSEARSLQLEISRHDCFPNVKTY 409



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 104/218 (47%), Gaps = 6/218 (2%)

Query: 179 AFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
           AF  LIK         +A   F  ++ F C P+V TY+ +++ L +    ++AL ++  M
Sbjct: 128 AFFVLIKVYLKMGLTDKAMETFGSMRDFDCTPDVYTYNMILDVLIQKNFLLLALTVYTRM 187

Query: 239 ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGF 298
              N      C PN  T++ +IDGLCK G V  A  LF +M  + I PD  TY  +I G 
Sbjct: 188 MKLN------CLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPDAFTYCVVISGL 241

Query: 299 CYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNT 358
           C +   ++A  L  +M D GV PD VT N +++  C   ++DEA  LL L    G   + 
Sbjct: 242 CRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLRLFEKDGYVLDV 301

Query: 359 STFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +S L+ G     R    + L+  M     K  V+ Y
Sbjct: 302 RGYSCLIRGLFRAKRYEDVQLLYRKMIEDNVKPDVYLY 339



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 6/194 (3%)

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
           LK  G K +   +  LI    + G T  A+  F  M + +      C P+  TY  I+D 
Sbjct: 117 LKNGGIKVHNDAFFVLIKVYLKMGLTDKAMETFGSMRDFD------CTPDVYTYNMILDV 170

Query: 263 LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
           L ++ F+  A  ++ +M   N  P+V T++ LI G C + +  +A  L  EM  +G+ PD
Sbjct: 171 LIQKNFLLLALTVYTRMMKLNCLPNVATFSILIDGLCKSGNVKDALHLFDEMTQRGILPD 230

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
             T+ V++  LC++ ++D+A RL + M   GV P+  T + L++GFC+  RV+ A  L  
Sbjct: 231 AFTYCVVISGLCRSKRVDDAYRLFDKMKDSGVGPDFVTCNALLNGFCMLDRVDEAFSLLR 290

Query: 383 SMESMGCKHTVFSY 396
             E  G    V  Y
Sbjct: 291 LFEKDGYVLDVRGY 304



 Score = 73.9 bits (180), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 82/179 (45%), Gaps = 7/179 (3%)

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           +  +L  +G  P +YTYNIL+N FCK+G  +  + +   +     +PD V + +LI GL 
Sbjct: 511 ILMQLADSGDAPGIYTYNILVNGFCKLGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLL 570

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
              R  +A  +F +++  GC P+   Y T++  +CR      A +L+        K+   
Sbjct: 571 RFQREEDAYKVFDQMEKNGCTPDAAVYRTMMTWMCRRMELPRAFSLWL-------KYLRN 623

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            +         I+G  ++  V+KA    L+M  K  + D+  Y   + G C      EA
Sbjct: 624 IRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDFKLNDFDLGPYAIWLIGLCQTRRVGEA 682



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 103/261 (39%), Gaps = 57/261 (21%)

Query: 60  VKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAK 119
           V D ASL++ +++ C S           ++A+ I    L      P + ++N+L     K
Sbjct: 486 VLDSASLQKMVEQLCDSG--------LIHKAYRIL-MQLADSGDAPGIYTYNILVNGFCK 536

Query: 120 TKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVA 179
             +++    LF+ +   GL PD  TY  LIN   +  R    + V  ++ ++  TPDA  
Sbjct: 537 LGNFNGAYKLFREMQFKGLSPDTVTYGTLINGLLRFQREEDAYKVFDQMEKNGCTPDAAV 596

Query: 180 FTSLIKGLCAESRIMEAAALFT-------------------------------------- 201
           + +++  +C    +  A +L+                                       
Sbjct: 597 YRTMMTWMCRRMELPRAFSLWLKYLRNIRSQEDEAIKAIEGYFEKQEVEKAVRGLLEMDF 656

Query: 202 KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
           KL  F   P    Y+  + GLC+T     AL +F  +     ++ VV  P       +I 
Sbjct: 657 KLNDFDLGP----YAIWLIGLCQTRRVGEALKIFLILE----EYKVVITPPCC--VKLIY 706

Query: 262 GLCKEGFVDKAKELFLQMKDK 282
            L KEG +D+A ++FL   +K
Sbjct: 707 FLLKEGDLDRAIDVFLYTIEK 727


>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
          Length = 1765

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 94/310 (30%), Positives = 157/310 (50%), Gaps = 9/310 (2%)

Query: 88   NEAFCIFDYMLNMRPSPPPLTSFNLLFG-CLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
            ++A  ++D ML         ++  L+ G CL   +  +  L L +     G  P +  YN
Sbjct: 1129 DDARKLYDEMLGKDSGADNYSTCVLVRGLCL--ERRVEEGLKLIEARWGAGCIPHVVFYN 1186

Query: 147  ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            +LI+ +C+ G +  G ++LG +    F P  V + SLI  L  +  + +  +LF +++  
Sbjct: 1187 VLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKR 1246

Query: 207  GCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKE 266
            G  PNV  Y+++I+ LC+      A+ + ++M      F   C P+ +T+ T+I GLC E
Sbjct: 1247 GFSPNVQIYNSVIDALCKCRSATQAMVILKQM------FASGCDPDIITFNTLITGLCHE 1300

Query: 267  GFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTF 326
            G V KA+    +   + +NP+ ++Y  LIHGFC   +   A+ LL+EMM +G  PDVVTF
Sbjct: 1301 GHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTF 1360

Query: 327  NVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
              ++  L   GK+ EA  + E M  R V P+ + ++ L+ G C    +  AK +   M  
Sbjct: 1361 GALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLE 1420

Query: 387  MGCKHTVFSY 396
               +   F Y
Sbjct: 1421 KNVQPDEFVY 1430



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 87/284 (30%), Positives = 141/284 (49%), Gaps = 6/284 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P +  +N+L     +       L L   + + G  P L TY  LIN   K G +     +
Sbjct: 1180 PHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKGFLPTLVTYGSLINWLGKKGDLEKIGSL 1239

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               + +  F+P+   + S+I  LC      +A  +  ++ A GC P++IT++TLI GLC 
Sbjct: 1240 FLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDPDIITFNTLITGLCH 1299

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             GH   A +   E             PN ++YT +I G C  G +  A +L ++M  +  
Sbjct: 1300 EGHVRKAEHFLREAIRRE------LNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGH 1353

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             PDVVT+ +LIHG   A   +EA  +  +M ++ V PDV  +NV++  LCK   +  A  
Sbjct: 1354 TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKN 1413

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +LE M+ + V P+   ++TL+DGF  +  +  A+++F  ME  G
Sbjct: 1414 ILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKG 1457



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 141/292 (48%), Gaps = 6/292 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + +FN L   L    H        +      L P+  +Y  LI+ FC  G +     +
Sbjct: 1285 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDL 1344

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L  ++    TPD V F +LI GL    ++ EA  +  K+      P+V  Y+ LI+GLC+
Sbjct: 1345 LVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 1404

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  A N+ EEM   N       +P+   Y T+IDG  +   +  A+++F  M+ K I
Sbjct: 1405 KRMLPAAKNILEEMLEKN------VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGI 1458

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             PD+V+ N++I G+C     +EA   +  M   G  PD  T+  ++    K G ++ A R
Sbjct: 1459 CPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALR 1518

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             L  MI R   PN  T+S+L++G+C TG  + A+ LF +M++      V +Y
Sbjct: 1519 WLCDMIKRKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTY 1570



 Score =  140 bits (354), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 82/256 (32%), Positives = 125/256 (48%), Gaps = 8/256 (3%)

Query: 137  GLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
            G  P++   N L+    +  R      +   +L      D  +   L++GLC E R+ E 
Sbjct: 1107 GSLPEVTHCNRLLKLLVEQRRWDDARKLYDEMLGKDSGADNYSTCVLVRGLCLERRVEEG 1166

Query: 197  AALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTY 256
              L       GC P+V+ Y+ LI+G CR G     L L  EM            P  VTY
Sbjct: 1167 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMETKG------FLPTLVTY 1220

Query: 257  TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMD 316
             ++I+ L K+G ++K   LFL+M+ +  +P+V  YNS+I   C      +A  +L +M  
Sbjct: 1221 GSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFA 1280

Query: 317  QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNH 376
             G  PD++TFN ++  LC  G + +A   L   I R +NPN  +++ L+ GFC+ G +  
Sbjct: 1281 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMV 1340

Query: 377  AKELFVSMESMGCKHT 392
            A +L V M  MG  HT
Sbjct: 1341 ASDLLVEM--MGRGHT 1354



 Score =  129 bits (323), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 141/312 (45%), Gaps = 16/312 (5%)

Query: 67   EQFLKERCKSSGQGDITAITP--------NEAFCIFDYMLNM--RPSPPPLTSFNLLFGC 116
            E FL+E  +     +  + TP         E     D ++ M  R   P + +F  L   
Sbjct: 1307 EHFLREAIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTPDVVTFGALIHG 1366

Query: 117  LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD 176
            L         L + +++    +FPD+  YN+LI+  CK   +     +L  +L     PD
Sbjct: 1367 LVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCKKRMLPAAKNILEEMLEKNVQPD 1426

Query: 177  AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
               + +LI G      + +A  +F  ++  G  P++++ + +I G C+ G    A+    
Sbjct: 1427 EFVYATLIDGFIRSENLGDARKIFEFMEHKGICPDIVSCNAMIKGYCQFGMMSEAILCMS 1486

Query: 237  EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
             M        V C P+  TYTT+I G  K+G ++ A      M  +   P+VVTY+SLI+
Sbjct: 1487 NMRK------VGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNVVTYSSLIN 1540

Query: 297  GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            G+C   D + A  L   M  + + P+VVT+ +++  L K  K+  A    E M+L   +P
Sbjct: 1541 GYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLRAGLYFETMLLNHCSP 1600

Query: 357  NTSTFSTLMDGF 368
            N  T   L++G 
Sbjct: 1601 NDVTLHYLVNGL 1612



 Score =  112 bits (281), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 82/297 (27%), Positives = 136/297 (45%), Gaps = 24/297 (8%)

Query: 93   IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
            I + ML     P       L+ G + ++++      +F+ +   G+ PD+ + N +I  +
Sbjct: 1414 ILEEMLEKNVQPDEFVYATLIDGFI-RSENLGDARKIFEFMEHKGICPDIVSCNAMIKGY 1472

Query: 153  CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            C+ G +S   + +  + +    PD   +T++I G   +  +  A      +    CKPNV
Sbjct: 1473 CQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDMIKRKCKPNV 1532

Query: 213  ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            +TYS+LING C+TG T  A  LF  M            PN VTYT +I  L K+  V +A
Sbjct: 1533 VTYSSLINGYCKTGDTDFAEGLFANMQ------AEALSPNVVTYTILIGSLFKKDKVLRA 1586

Query: 273  KELFLQMKDKNINPDVVTYNSLIHGF------------CYANDWNEANCLLIE----MMD 316
               F  M   + +P+ VT + L++G             C  ++ +  + LL+     + D
Sbjct: 1587 GLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVFD 1646

Query: 317  QGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
             G  P    +N I+  LC++  + EA      M  +G  PN  TF +L+ GFC  G+
Sbjct: 1647 IG-DPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGK 1702



 Score = 37.7 bits (86), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 37/179 (20%), Positives = 61/179 (34%), Gaps = 50/179 (27%)

Query: 101  RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV-- 158
            R   P + +++ L     KT   D    LF  + +  L P++ TY ILI    K  +V  
Sbjct: 1526 RKCKPNVVTYSSLINGYCKTGDTDFAEGLFANMQAEALSPNVVTYTILIGSLFKKDKVLR 1585

Query: 159  --------------------------------------------SHG----FVVLGRILR 170
                                                         HG     VV  +++ 
Sbjct: 1586 AGLYFETMLLNHCSPNDVTLHYLVNGLTSCTPCVINSICCNTSEVHGKDALLVVFKKLVF 1645

Query: 171  SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P   A+ ++I  LC  + + EA     ++   G  PN IT+ +L+ G C  G ++
Sbjct: 1646 DIGDPRNSAYNAIIFSLCRHNMLREALDFKNRMAKKGYVPNPITFLSLLYGFCSVGKSV 1704


>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
          Length = 376

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPN   Y+TLINGL    
Sbjct: 119 MAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+GLCK     +A  L  ++ DK +NP
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +   +A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342



 Score =  125 bits (313), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 76/302 (25%), Positives = 145/302 (48%), Gaps = 30/302 (9%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE------- 236
           ++GL    ++ E  +++  +K  G   + ITY  L++G C+ G+   +L++ E       
Sbjct: 66  MRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGG 125

Query: 237 --------EMANG--------------NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
                    M NG              NG     CKPN   Y T+I+GL      + A  
Sbjct: 126 VVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIR 185

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F +M   + +P ++TYN+LI+G C    + EA  L+ E++D+G+ P V+T++++M  LC
Sbjct: 186 VFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLC 245

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            + K+++A +L   +  +G  P+    + L+ G C  G++  A  L+  M    C   + 
Sbjct: 246 LDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLV 305

Query: 395 SY 396
           S+
Sbjct: 306 SH 307



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 62  DRAS--LEQFLKERCKSSGQ-------GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           DRA   L   +K  CK +         G + A    +A  +F  M  M  SP  +T +N 
Sbjct: 146 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIIT-YNT 204

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K + +    +L K L   GL P + TY++L+   C   +V     +  ++    
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F PD      LI GLC+  ++  A +L+  +  + C PN+++++TL+ G  + G    AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
            ++  +   NG      +P+ ++Y   + GLC
Sbjct: 325 VIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ ++ ++ +  ++PD V YN++++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN++M  L  N K+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             E  G     F+Y
Sbjct: 119 MAEQKGGVVDAFAY 132



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N+L   L         LSL+  +N     P+L ++N L+  F K G + +  V+
Sbjct: 267 PDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
             RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 327 WARILRNGLEPDIISYNITLKGLCSCNRISDA 358


>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g09900-like [Glycine max]
          Length = 789

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 160/341 (46%), Gaps = 43/341 (12%)

Query: 92  CIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           C+ + M+      P   ++N L   L+K  H D  L+  K     G   D   Y+ +++ 
Sbjct: 357 CLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHS 416

Query: 152 FCKMGRVSHG-FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
           FC+ GR+     +V+    RSC  PD V +T+++ G C   RI EA  +  ++   GCKP
Sbjct: 417 FCQKGRMDEAKSLVIDMYSRSC-NPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKP 475

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N ++Y+ L+NGLC +G ++ A     EM N + +      PN +TY  ++ G  +EG + 
Sbjct: 476 NTVSYTALLNGLCHSGKSLEA----REMINVSEEHWWT--PNAITYGVVMHGFRREGKLS 529

Query: 271 KAKELFLQMKDKNINP-----------------------------------DVVTYNSLI 295
           +A +L  +M +K   P                                   +VV + ++I
Sbjct: 530 EACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVI 589

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
           HGFC   D   A  +L +M      PD VT+  + D L K G++DEA+ L+  M+ +G++
Sbjct: 590 HGFCQIGDMEAALSVLEDMYLSNKHPDAVTYTALFDALGKKGRLDEAAELIVKMLSKGLD 649

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P   TF +++  +C  GRV+    L   M       T++++
Sbjct: 650 PTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRKPFRTIYNH 690



 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 88/282 (31%), Positives = 145/282 (51%), Gaps = 7/282 (2%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           PP   S+  + G L K K  + V  L +++   + L PD  TYN LI+   K G      
Sbjct: 333 PPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDAL 392

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
             L       F  D V +++++   C + R+ EA +L   + +  C P+V+TY+ +++G 
Sbjct: 393 AFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGF 452

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           CR G    A  + ++M     K G  CKPNTV+YT +++GLC  G   +A+E+    ++ 
Sbjct: 453 CRLGRIDEAKKMLQQMY----KHG--CKPNTVSYTALLNGLCHSGKSLEAREMINVSEEH 506

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              P+ +TY  ++HGF      +EA  L  EM+++G  P  V  N+++  LC+N K+ EA
Sbjct: 507 WWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEA 566

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            + LE  + +G   N   F+T++ GFC  G +  A  +   M
Sbjct: 567 KKYLEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDM 608



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 9/272 (3%)

Query: 114 FGCL----AKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           FGC+    ++       L +   +   G+ P+L   N  I    K  ++      L R+ 
Sbjct: 234 FGCVMVSYSRAGKLRNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQ 293

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +   PD V + SLIKG C  +RI +A  L   L + GC P+ ++Y T++  LC+     
Sbjct: 294 VTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLCKEKKIE 353

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
               L E+M   +        P+ VTY T+I  L K G  D A     + +DK  + D V
Sbjct: 354 QVKCLMEKMVQDSNLI-----PDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKV 408

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
            Y++++H FC     +EA  L+I+M  +   PDVVT+  I+D  C+ G++DEA ++L+ M
Sbjct: 409 GYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQM 468

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
              G  PNT +++ L++G C +G+   A+E+ 
Sbjct: 469 YKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 500



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/285 (30%), Positives = 147/285 (51%), Gaps = 7/285 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L+  N     L K    +  L   +R+  TG+ PD+ TYN LI  +C + R+     +
Sbjct: 264 PNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALEL 323

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLC 223
           +  +      PD V++ +++  LC E +I +   L  K+ +     P+ +TY+TLI+ L 
Sbjct: 324 IAGLPSKGCPPDKVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLS 383

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
           + GH   AL   +E A   G F +    + V Y+ I+   C++G +D+AK L + M  ++
Sbjct: 384 KHGHADDALAFLKE-AEDKG-FHI----DKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRS 437

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
            NPDVVTY +++ GFC     +EA  +L +M   G +P+ V++  +++ LC +GK  EA 
Sbjct: 438 CNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAR 497

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++ +       PN  T+  +M GF   G+++ A +L   M   G
Sbjct: 498 EMINVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKG 542



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 87/299 (29%), Positives = 148/299 (49%), Gaps = 8/299 (2%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
             R S  PL  + LL   L+KTK       + + +   G+      +  ++  + + G++
Sbjct: 189 QWRYSHHPLVYYTLL-DVLSKTKLCQGARRVLRLMTRRGIELSPEAFGCVMVSYSRAGKL 247

Query: 159 SHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTL 218
            +   VL  + ++   P+     + I  L    ++ +A     +++  G KP+++TY++L
Sbjct: 248 RNALRVLTLMQKAGVEPNLSICNTTIYVLVKGCKLEKALRFLERMQVTGIKPDIVTYNSL 307

Query: 219 INGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           I G C       AL L   + +        C P+ V+Y T++  LCKE  +++ K L  +
Sbjct: 308 IKGYCDLNRIEDALELIAGLPSKG------CPPDKVSYYTVMGFLCKEKKIEQVKCLMEK 361

Query: 279 M-KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNG 337
           M +D N+ PD VTYN+LIH        ++A   L E  D+G   D V ++ I+   C+ G
Sbjct: 362 MVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKG 421

Query: 338 KMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +MDEA  L+  M  R  NP+  T++ ++DGFC  GR++ AK++   M   GCK    SY
Sbjct: 422 RMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRLGRIDEAKKMLQQMYKHGCKPNTVSY 480



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 124/285 (43%), Gaps = 39/285 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           P+  TY ++++ F + G++S    +   ++   F P  V    LI+ LC   +++EA   
Sbjct: 510 PNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKY 569

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
             +    GC  NV+ ++T+I+G C+ G    AL++ E+M   N        P+ VTYT +
Sbjct: 570 LEECLNKGCAINVVNFTTVIHGFCQIGDMEAALSVLEDMYLSNKH------PDAVTYTAL 623

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN----------------- 302
            D L K+G +D+A EL ++M  K ++P  VT+ S+IH +C                    
Sbjct: 624 FDALGKKGRLDEAAELIVKMLSKGLDPTPVTFRSVIHRYCQWGRVDDMLNLLDRMVKRKP 683

Query: 303 ----------------DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
                           +  EA  LL +++    + D  T +V+M+   K G    A ++ 
Sbjct: 684 FRTIYNHVIEKLCDFGNLEEAEKLLGKVLRTASKLDANTCHVLMESCLKKGVALSAYKVA 743

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             M  R + P+      +     L G +  A +L +     G + 
Sbjct: 744 CQMFRRNLTPDLKLCEKVTKKLVLDGNLVEADKLMLRFVERGIQQ 788


>gi|449460167|ref|XP_004147817.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g19290-like [Cucumis sativus]
          Length = 942

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/336 (31%), Positives = 160/336 (47%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A C+FD M       P L S N L   L +       L +++++ + G+ PD+++Y I++
Sbjct: 205 ALCVFDNM-GKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQMIALGILPDIFSYTIMV 263

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +CK GRV   F  +  + RSC  P+ V + SLI G  +   +  A  +   +   G  
Sbjct: 264 NAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGDVCGAKKVLALMSEKGIP 323

Query: 210 PNVITYSTLINGLCRTGHT---------IVALNLF-EEMANG------------------ 241
            N  TY+ LI G C+ G           ++  NLF +E   G                  
Sbjct: 324 ENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAGRVDDALRI 383

Query: 242 -NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
            +    V  K NTV   ++I+G CK G V+KA E+ + MKD N+ PD   YN+L+ GFC 
Sbjct: 384 RDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYNTLLDGFCK 443

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
             D+ +A  L  EM ++GV   VVT+N ++  L   G ++ A  +  LM  RGV PN  T
Sbjct: 444 QEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVT 503

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           + TL+D F   G  + A  ++    S G   ++  Y
Sbjct: 504 YCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLY 539



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/241 (29%), Positives = 132/241 (54%), Gaps = 6/241 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L   L    H +  L ++  ++  G+ P+  TY  L++ F K+G      ++  
Sbjct: 466 VVTYNTLLKNLFHVGHVEHALHIWNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWK 525

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
             L   FT     + ++I G C   ++++A  +F K+K  G  P+ ITY TLI+G C+ G
Sbjct: 526 DALSKGFTKSITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVG 585

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           + + AL L ++M+  +G        +T  Y ++I G+ +   + K   L  +MK++ ++P
Sbjct: 586 NLVEALKL-KDMSERDG-----ISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSP 639

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +VVTY SLI G+C     ++A     +M+D+G+ P+++  + I+  L ++GK+DEA+ +L
Sbjct: 640 NVVTYGSLIAGWCDKGMMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLIL 699

Query: 347 E 347
            
Sbjct: 700 H 700



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 141/289 (48%), Gaps = 6/289 (2%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T F+++    A+       L +F  +   G  P L + N L++   + G      +V  +
Sbjct: 187 TVFDMILKVFAEKGMTKFALCVFDNMGKCGRVPSLRSCNSLLSNLVQNGEAFKALLVYEQ 246

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     PD  ++T ++   C E R+ EA     +++   C+PNV+TY++LI+G    G 
Sbjct: 247 MIALGILPDIFSYTIMVNAYCKEGRVDEAFNFVKEMERSCCEPNVVTYNSLIDGYVSLGD 306

Query: 228 TIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPD 287
              A  +   M+            N+ TYT +I G CK G +++A++L   M +KN+  D
Sbjct: 307 VCGAKKVLALMSEKG------IPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVD 360

Query: 288 VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLE 347
              Y  LIH +C A   ++A  +   M+  G++ + V  N +++  CK G +++A+ +L 
Sbjct: 361 EHVYGVLIHAYCTAGRVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLV 420

Query: 348 LMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            M    + P++  ++TL+DGFC       A +L   M + G   TV +Y
Sbjct: 421 SMKDWNLKPDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTY 469



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 80/329 (24%), Positives = 140/329 (42%), Gaps = 29/329 (8%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           +++ +  P    ++ LL     K    +    L   +    LF D + Y +LI+ +C  G
Sbjct: 316 LMSEKGIPENSRTYTLLIKGYCKRGQMEQAEKLIGCMMEKNLFVDEHVYGVLIHAYCTAG 375

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           RV     +   +L+     + V   SLI G C    + +AA +   +K +  KP+   Y+
Sbjct: 376 RVDDALRIRDAMLKVGLKMNTVICNSLINGYCKLGHVNKAAEVLVSMKDWNLKPDSYGYN 435

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVV---------------------------- 248
           TL++G C+    I A  L +EM N    F VV                            
Sbjct: 436 TLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHIWNLMHKR 495

Query: 249 -CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
              PN VTY T++D   K G  D+A  ++     K     +  YN++I GFC      +A
Sbjct: 496 GVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCKMEKLVQA 555

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             + ++M + G  PD +T+  ++D  CK G + EA +L ++    G++ +T  +++L+ G
Sbjct: 556 QEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGISSSTEMYNSLITG 615

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              +  +     L   M++      V +Y
Sbjct: 616 VFRSEELQKLNGLLAEMKNRELSPNVVTY 644



 Score =  119 bits (299), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 144/346 (41%), Gaps = 64/346 (18%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV-- 164
           +T +N +     K +       +F ++   G  PD  TY  LI+ +CK+G +     +  
Sbjct: 536 ITLYNTMICGFCKMEKLVQAQEIFLKMKELGFPPDEITYRTLIDGYCKVGNLVEALKLKD 595

Query: 165 ---------------------------------LGRILRSCFTPDAVAFTSLIKGLCAES 191
                                            L  +     +P+ V + SLI G C + 
Sbjct: 596 MSERDGISSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKG 655

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG---------HTIVALNLF------- 235
            + +A   + K+   G  PN+I  S +++ L R G         H I  ++         
Sbjct: 656 MMDKAYNAYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEANLILHQIADIDPIAAHAHSV 715

Query: 236 ------------EEMANGNGKFGV-VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
                       +++ +  GK  + +   N + Y   I GLCK   +D  + +   +  K
Sbjct: 716 ELPKSDLRHLETQKIVDSFGKKAMSIPISNNIVYNIAITGLCKSKNIDDVRRILSDLLLK 775

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
              PD  TY SLIH        NEA CL  +M++ G+ P++V +N +++ LCK+G +D A
Sbjct: 776 GFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMINAGLVPNIVVYNALINGLCKSGNLDRA 835

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            RL   +  +G++P   T++TL+DG+C  GR   A EL   M   G
Sbjct: 836 RRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTTEALELKDKMREEG 881



 Score = 99.8 bits (247), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 123/273 (45%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L     K + +     L   +++ G+   + TYN L+     +G V H   +
Sbjct: 429 PDSYGYNTLLDGFCKQEDFIKAFKLCDEMHNKGVNFTVVTYNTLLKNLFHVGHVEHALHI 488

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ V + +L+           A  ++    + G   ++  Y+T+I G C+
Sbjct: 489 WNLMHKRGVAPNEVTYCTLLDAFFKVGTFDRAMMIWKDALSKGFTKSITLYNTMICGFCK 548

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
               + A  +F +M     + G    P+ +TY T+IDG CK G + +A +L    +   I
Sbjct: 549 MEKLVQAQEIFLKMK----ELGF--PPDEITYRTLIDGYCKVGNLVEALKLKDMSERDGI 602

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +     YNSLI G   + +  + N LL EM ++ + P+VVT+  ++   C  G MD+A  
Sbjct: 603 SSSTEMYNSLITGVFRSEELQKLNGLLAEMKNRELSPNVVTYGSLIAGWCDKGMMDKAYN 662

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
               MI +G+ PN    S ++      G+++ A
Sbjct: 663 AYFKMIDKGIAPNIIIGSKIVSSLYRHGKIDEA 695



 Score = 98.2 bits (243), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 58/170 (34%), Positives = 91/170 (53%), Gaps = 6/170 (3%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N+    L K+K+ D V  +   L   G  PD YTY  LI+    +G+V+  F +   ++
Sbjct: 749 YNIAITGLCKSKNIDDVRRILSDLLLKGFCPDNYTYCSLIHACSAVGKVNEAFCLRDDMI 808

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +   P+ V + +LI GLC    +  A  LF KL   G  P V+TY+TLI+G C+ G T 
Sbjct: 809 NAGLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNTLIDGYCKGGRTT 868

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            AL L ++M         +C P+++TY+T+I GL  EG  +++  L  +M
Sbjct: 869 EALELKDKMREEG-----IC-PSSITYSTLIHGLYMEGKSEQSVGLLNEM 912



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 64/126 (50%), Gaps = 1/126 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAFC+ D M+N     P +  +N L   L K+ + D    LF +L   GL P + TYN 
Sbjct: 798 NEAFCLRDDMINA-GLVPNIVVYNALINGLCKSGNLDRARRLFNKLARKGLSPTVVTYNT 856

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+ +CK GR +    +  ++      P ++ +++LI GL  E +  ++  L  ++   G
Sbjct: 857 LIDGYCKGGRTTEALELKDKMREEGICPSSITYSTLIHGLYMEGKSEQSVGLLNEMMKAG 916

Query: 208 CKPNVI 213
              +V+
Sbjct: 917 KGSSVM 922


>gi|224117008|ref|XP_002317451.1| predicted protein [Populus trichocarpa]
 gi|222860516|gb|EEE98063.1| predicted protein [Populus trichocarpa]
          Length = 461

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/264 (34%), Positives = 139/264 (52%), Gaps = 8/264 (3%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + S+N L       K +D +  LF  +   G   D  TYN+LI  FC  GR+     V  
Sbjct: 116 VKSYNSLLSVFLMCKDFDKMRELFVGIEKLGK-ADACTYNLLIRGFCASGRLDDASKVFD 174

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRT 225
            +     +P+ + F +LI G C   R+ EA  L T + K +   PN   Y++LI G+C+ 
Sbjct: 175 EMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYASLIKGVCKN 234

Query: 226 GHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
           G   +A  L +EM     +       +   Y+T+I GL K G  ++A  ++  MK++   
Sbjct: 235 GELSLAFRLKKEMIRNKIEL------DPAIYSTLISGLFKAGRKEEALGVWEDMKERGYK 288

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           PD VTYN +I+ FC   D+  A  LL EM+++G +PDV+++NVI+ EL + GK  EA+ L
Sbjct: 289 PDTVTYNVIINLFCKDKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDL 348

Query: 346 LELMILRGVNPNTSTFSTLMDGFC 369
            E M  RG  P+  ++  L DGFC
Sbjct: 349 FEDMPRRGCAPDVVSYRILFDGFC 372



 Score =  127 bits (319), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 104/361 (28%), Positives = 160/361 (44%), Gaps = 40/361 (11%)

Query: 43  PSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEA-FC-IFDYMLNM 100
           PS P   + L   L +T   RA +   ++E      +   T  TP EA FC I ++    
Sbjct: 37  PSKPFRYSLLSYDLIITKLGRAKMFNEMQEILAQLKEE--TLFTPKEALFCDIINFYGRA 94

Query: 101 RPSPPPLTSFNLL-----FGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           R    P  +  LL     F      K Y+++LS+F                ++   F KM
Sbjct: 95  RL---PENALKLLVELPSFRVQRTVKSYNSLLSVF----------------LMCKDFDKM 135

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
             +  G   LG+        DA  +  LI+G CA  R+ +A+ +F ++   G  PNVIT+
Sbjct: 136 RELFVGIEKLGK-------ADACTYNLLIRGFCASGRLDDASKVFDEMTNRGVSPNVITF 188

Query: 216 STLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL 275
             LI G C       A  L  +M      +     PN   Y ++I G+CK G +  A  L
Sbjct: 189 GNLIYGFCLHLRLKEAFKLKTDMVKVYRVY-----PNAYIYASLIKGVCKNGELSLAFRL 243

Query: 276 FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCK 335
             +M    I  D   Y++LI G   A    EA  +  +M ++G +PD VT+NVI++  CK
Sbjct: 244 KKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDMKERGYKPDTVTYNVIINLFCK 303

Query: 336 NGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           +   + A RLL+ M+ +G  P+  +++ ++      G+   A +LF  M   GC   V S
Sbjct: 304 DKDFEAAYRLLDEMVEKGCKPDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVS 363

Query: 396 Y 396
           Y
Sbjct: 364 Y 364



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 120/253 (47%), Gaps = 6/253 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++A  +FD M N   SP  +T  NL++G     +  +        +    ++P+ Y Y  
Sbjct: 167 DDASKVFDEMTNRGVSPNVITFGNLIYGFCLHLRLKEAFKLKTDMVKVYRVYPNAYIYAS 226

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI   CK G +S  F +   ++R+    D   +++LI GL    R  EA  ++  +K  G
Sbjct: 227 LIKGVCKNGELSLAFRLKKEMIRNKIELDPAIYSTLISGLFKAGRKEEALGVWEDMKERG 286

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            KP+ +TY+ +IN  C+      A  L +EM          CKP+ ++Y  I+  L +EG
Sbjct: 287 YKPDTVTYNVIINLFCKDKDFEAAYRLLDEMVEKG------CKPDVISYNVILRELFEEG 340

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +A +LF  M  +   PDVV+Y  L  GFC    + EA  +L EM+ +G  P   +  
Sbjct: 341 KRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQFKEAAFILDEMIFKGFVPCSASIC 400

Query: 328 VIMDELCKNGKMD 340
             ++ LC+    D
Sbjct: 401 KFVNRLCEGKNED 413



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/162 (20%), Positives = 65/162 (40%), Gaps = 1/162 (0%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G   A    EA  +++ M   R   P   ++N++     K K ++    L   +   G  
Sbjct: 265 GLFKAGRKEEALGVWEDM-KERGYKPDTVTYNVIINLFCKDKDFEAAYRLLDEMVEKGCK 323

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD+ +YN+++    + G+      +   + R    PD V++  L  G C   +  EAA +
Sbjct: 324 PDVISYNVILRELFEEGKRGEANDLFEDMPRRGCAPDVVSYRILFDGFCNGMQFKEAAFI 383

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
             ++   G  P   +    +N LC   +  +  + F  +  G
Sbjct: 384 LDEMIFKGFVPCSASICKFVNRLCEGKNEDLLRSAFNTLEKG 425


>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 586

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 181/369 (49%), Gaps = 27/369 (7%)

Query: 35  KSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFC-- 92
           +   + N  +  T   KL +  +    DR  L Q   E CK   +G    +  + + C  
Sbjct: 159 QKGFNHNNATYATILQKLAQFKKFQAVDRV-LHQMTYEACKFH-EGVFINLMKHYSKCGF 216

Query: 93  ---IFDYMLNM------RPSPPPLTS-FNLLFGCLAKTKHYDTVLSLFKRLNSTGLF-PD 141
              +FD  L++      +PSP  ++S  NLL      +   D V  L      + ++ P+
Sbjct: 217 HEKVFDAFLSIQTIVREKPSPKAISSCLNLL----VDSNQVDLVRKLLLYAKRSLVYKPN 272

Query: 142 LYTYNILINCFCKMGRVSHGFVVLGRILRSCFT-PDAVAFTSLIKGLCAESRIMEAAALF 200
           +  +NIL+   C+ G +   F V+  +  S ++ P+ + +++L+ GLC   R+ EA  LF
Sbjct: 273 VCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFELF 332

Query: 201 TKLKAFG-CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            ++ +     P+ +TY+ LING CR G    A N+ E M N NG     C PN   Y+ +
Sbjct: 333 EEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKN-NG-----CCPNVFNYSAL 386

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           +DGLCK G +  AK +  +MK   + PD +TY SLI+ F      +EA  LL EM +   
Sbjct: 387 VDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDC 446

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           Q D VTFNVI+  LC+ G+ DEA  ++E +  +GV  N  ++  +++       +  A +
Sbjct: 447 QADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANK 506

Query: 380 LFVSMESMG 388
           L   M S G
Sbjct: 507 LLGLMLSRG 515



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 149/286 (52%), Gaps = 8/286 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRL-NSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P +  FN+L     +    D+   + K + NS   +P++ TY+ L++  C+ GR+   F 
Sbjct: 271 PNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFE 330

Query: 164 VLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           +   ++ +    PD + +  LI G C E +   A  +   +K  GC PNV  YS L++GL
Sbjct: 331 LFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGL 390

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A  +  EM +         KP+ +TYT++I+   + G +D+A EL  +MK+ 
Sbjct: 391 CKAGKLQDAKGVLAEMKSSG------LKPDAITYTSLINFFSRNGQIDEAIELLTEMKEN 444

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           +   D VT+N ++ G C    ++EA  ++ ++  QGV  +  ++ ++++ L +N ++ +A
Sbjct: 445 DCQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKA 504

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++LL LM+ RG  P+ +T + L+   C  G  N A      +  MG
Sbjct: 505 NKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMG 550



 Score =  138 bits (347), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 85/314 (27%), Positives = 156/314 (49%), Gaps = 15/314 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            +K  C+   +GDI     + AF +   M N + S P + +++ L   L +         
Sbjct: 279 LVKYHCR---RGDI-----DSAFEVVKEMRNSKYSYPNVITYSTLMDGLCRNGRLKEAFE 330

Query: 129 LFKRLNSTG-LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           LF+ + S   + PD  TYN+LIN FC+ G+      V+  +  +   P+   +++L+ GL
Sbjct: 331 LFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPNVFNYSALVDGL 390

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
           C   ++ +A  +  ++K+ G KP+ ITY++LIN   R G    A+ L  EM   +     
Sbjct: 391 CKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKEND----- 445

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C+ +TVT+  I+ GLC+EG  D+A ++  ++  + +  +  +Y  +++      +  +A
Sbjct: 446 -CQADTVTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKA 504

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
           N LL  M+ +G  P   T N ++  LCK G  ++A+  L  ++  G  P   ++  L+D 
Sbjct: 505 NKLLGLMLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDL 564

Query: 368 FCLTGRVNHAKELF 381
            C   ++ +  EL 
Sbjct: 565 ICRDRKLLYVFELL 578



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/322 (27%), Positives = 160/322 (49%), Gaps = 26/322 (8%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLN------STGLFP 140
           P  A  IF+ +   +       ++  +   LA+ K +  V  +  ++         G+F 
Sbjct: 146 PQHALKIFNMVSEQKGFNHNNATYATILQKLAQFKKFQAVDRVLHQMTYEACKFHEGVFI 205

Query: 141 DLYTYNILINCFCKMG---RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI--ME 195
           +L  +      + K G   +V   F+ +  I+R   +P A+  +S +  L   +++  + 
Sbjct: 206 NLMKH------YSKCGFHEKVFDAFLSIQTIVREKPSPKAI--SSCLNLLVDSNQVDLVR 257

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
              L+ K ++   KPNV  ++ L+   CR G    A  + +EM N    +     PN +T
Sbjct: 258 KLLLYAK-RSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSY-----PNVIT 311

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKN-INPDVVTYNSLIHGFCYANDWNEANCLLIEM 314
           Y+T++DGLC+ G + +A ELF +M  K+ I PD +TYN LI+GFC     + A  ++  M
Sbjct: 312 YSTLMDGLCRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFM 371

Query: 315 MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRV 374
            + G  P+V  ++ ++D LCK GK+ +A  +L  M   G+ P+  T+++L++ F   G++
Sbjct: 372 KNNGCCPNVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYTSLINFFSRNGQI 431

Query: 375 NHAKELFVSMESMGCKHTVFSY 396
           + A EL   M+   C+    ++
Sbjct: 432 DEAIELLTEMKENDCQADTVTF 453



 Score = 58.9 bits (141), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 60/135 (44%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            +FN++ G L +   +D  L + ++L   G++ +  +Y I++N   +   +     +LG 
Sbjct: 451 VTFNVILGGLCREGRFDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGL 510

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           +L   F P       L+  LC E    +AA     L   G +P   ++  LI+ +CR   
Sbjct: 511 MLSRGFVPHYATSNELLVRLCKEGMANDAATALFDLVDMGFQPQHDSWELLIDLICRDRK 570

Query: 228 TIVALNLFEEMANGN 242
            +    L +E+   N
Sbjct: 571 LLYVFELLDELVTSN 585


>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
          Length = 876

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/316 (31%), Positives = 151/316 (47%), Gaps = 26/316 (8%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  F  L   L K         L   +++ GL P++ TY  +I+ +CK G+V     VL 
Sbjct: 312 LQVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLK 371

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            + R    P+A  + SL+ GL  + ++ +A AL TK++  G  PNVITY+TL+ G C   
Sbjct: 372 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 431

Query: 227 HTIVALNLFEEMANGNGK-----FGVV----CKPN-----------------TVTYTTII 260
               A  LFE M     K     + V+    CK                    V YTT+I
Sbjct: 432 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRKGVALTKVYYTTLI 491

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG  K G  D A  L  +M D+   PD  TY+ L+H  C     NEA  +L +M  +G++
Sbjct: 492 DGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIK 551

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
             +  + +++DE+ + GK D A R+   M   G  P+ +T++  ++ +C  GR+  A++L
Sbjct: 552 CTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDL 611

Query: 381 FVSMESMGCKHTVFSY 396
            + ME  G    V +Y
Sbjct: 612 ILKMEREGVAPDVVTY 627



 Score =  147 bits (372), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 95/309 (30%), Positives = 143/309 (46%), Gaps = 16/309 (5%)

Query: 74  CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
           CKS   GD        A  +FD M      P  +T +N +    +K    +  L + + +
Sbjct: 184 CKSGRVGD--------ARLLFDAMPQNGVVPSVMT-YNAMIVGYSKLGRMNDALKIKELM 234

Query: 134 NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
              G  PD +TYN LI   C   +      +L   ++  FTP  V FT+LI G C   + 
Sbjct: 235 EKNGCHPDDWTYNTLIYGLCDQ-KTEEAEELLNNAVKEGFTPTVVTFTNLINGYCMAEKF 293

Query: 194 MEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNT 253
            +A  +  K+ +  CK ++  +  LIN L +      A  L  E++      G+V  PN 
Sbjct: 294 DDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN----GLV--PNV 347

Query: 254 VTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE 313
           +TYT+IIDG CK G VD A E+   M+     P+  TYNSL++G       ++A  LL +
Sbjct: 348 ITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTK 407

Query: 314 MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGR 373
           M   G+ P+V+T+  ++   C     D A RL E+M   G+ P+   ++ L D  C  GR
Sbjct: 408 MQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGR 467

Query: 374 VNHAKELFV 382
              A    V
Sbjct: 468 AEEAYSFIV 476



 Score =  140 bits (352), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/351 (26%), Positives = 162/351 (46%), Gaps = 65/351 (18%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH--------- 160
           +N     LA+    + +  ++ +L   GL PD  TYN +I  +CK G ++          
Sbjct: 36  YNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIKSYCKEGDLTTAHRYFRLLL 95

Query: 161 ----------------GFVVLGRILRSCF----------TPDAVAFTSLIKGLCAESRIM 194
                           G+   G + ++C+            +  ++T LI+GLC    + 
Sbjct: 96  EGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPLMGCQRNEYSYTILIQGLCDAKCVR 155

Query: 195 EAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMAN-------------- 240
           +A  LF  +K  GC PNV  ++ LI+GLC++G    A  LF+ M                
Sbjct: 156 KALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGVVPSVMTYNAMI 215

Query: 241 -GNGKFGVV--------------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNIN 285
            G  K G +              C P+  TY T+I GLC +   ++A+EL      +   
Sbjct: 216 VGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQK-TEEAEELLNNAVKEGFT 274

Query: 286 PDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRL 345
           P VVT+ +LI+G+C A  +++A  +  +MM    + D+  F  +++ L K  ++ EA  L
Sbjct: 275 PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKEL 334

Query: 346 LELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L  +   G+ PN  T+++++DG+C +G+V+ A E+   ME  GC+   ++Y
Sbjct: 335 LNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTY 385



 Score =  132 bits (332), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/318 (29%), Positives = 151/318 (47%), Gaps = 8/318 (2%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QG   A    +A  +F  M+      P + +F  L   L K+        LF  +   G+
Sbjct: 146 QGLCDAKCVRKALVLF-LMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAMPQNGV 204

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P + TYN +I  + K+GR++    +   + ++   PD   + +LI GLC + +  EA  
Sbjct: 205 VPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLC-DQKTEEAEE 263

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
           L       G  P V+T++ LING C       AL +  +M +        CK +   +  
Sbjct: 264 LLNNAVKEGFTPTVVTFTNLINGYCMAEKFDDALRMKNKMMSSK------CKLDLQVFGK 317

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +I+ L K+  + +AKEL  ++    + P+V+TY S+I G+C +   + A  +L  M   G
Sbjct: 318 LINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKMMERDG 377

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAK 378
            QP+  T+N +M  L K+ K+ +A  LL  M   G+ PN  T++TL+ G C     ++A 
Sbjct: 378 CQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAF 437

Query: 379 ELFVSMESMGCKHTVFSY 396
            LF  ME  G K    +Y
Sbjct: 438 RLFEMMEQNGLKPDEHAY 455



 Score =  128 bits (322), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/324 (26%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L         +D    LF+ +   GL PD + Y +L +  CK GR    +  
Sbjct: 415 PNVITYTTLLQGQCDEHDFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSF 474

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              I+R       V +T+LI G         AA L  ++   GC P+  TYS L++ LC+
Sbjct: 475 ---IVRKGVALTKVYYTTLIDGFSKAGNTDFAATLIERMIDEGCTPDSYTYSVLLHALCK 531

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 AL + ++M+      G+ C      YT +ID + +EG  D AK ++ +M     
Sbjct: 532 QKRLNEALPILDQMS----LRGIKC--TIFAYTILIDEMLREGKHDHAKRMYNEMTSSGH 585

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA-- 342
            P   TY   I+ +C      +A  L+++M  +GV PDVVT+N+++D     G +D A  
Sbjct: 586 KPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFS 645

Query: 343 -------------------------------------------------SRLLELMILRG 353
                                                             +LLE M+  G
Sbjct: 646 TLKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHG 705

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHA 377
           +NP  +T+S+L+ GFC  GR+  A
Sbjct: 706 LNPTVTTYSSLIAGFCKAGRLEEA 729



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 82/288 (28%), Positives = 134/288 (46%), Gaps = 7/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+ +L   L   K     L LF  +   G  P++  +  LI+  CK GRV    ++   +
Sbjct: 140 SYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVGDARLLFDAM 199

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            ++   P  + + ++I G     R+ +A  +   ++  GC P+  TY+TLI GLC     
Sbjct: 200 PQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLIYGLCDQKTE 259

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
                  EE+ N   K G    P  VT+T +I+G C     D A  +  +M       D+
Sbjct: 260 EA-----EELLNNAVKEGFT--PTVVTFTNLINGYCMAEKFDDALRMKNKMMSSKCKLDL 312

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             +  LI+     +   EA  LL E+   G+ P+V+T+  I+D  CK+GK+D A  +L++
Sbjct: 313 QVFGKLINSLIKKDRLKEAKELLNEISANGLVPNVITYTSIIDGYCKSGKVDIALEVLKM 372

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G  PN  T+++LM G     +++ A  L   M+  G    V +Y
Sbjct: 373 MERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITY 420



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 75/300 (25%), Positives = 132/300 (44%), Gaps = 9/300 (3%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           M+      P   ++N L   L K K     ++L  ++   G+ P++ TY  L+   C   
Sbjct: 372 MMERDGCQPNAWTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEH 431

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
              + F +   + ++   PD  A+  L   LC   R  EA +   +    G     + Y+
Sbjct: 432 DFDNAFRLFEMMEQNGLKPDEHAYAVLTDALCKAGRAEEAYSFIVRK---GVALTKVYYT 488

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
           TLI+G  + G+T  A  L E M +        C P++ TY+ ++  LCK+  +++A  + 
Sbjct: 489 TLIDGFSKAGNTDFAATLIERMIDEG------CTPDSYTYSVLLHALCKQKRLNEALPIL 542

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            QM  + I   +  Y  LI         + A  +  EM   G +P   T+ V ++  CK 
Sbjct: 543 DQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTVFINSYCKE 602

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++++A  L+  M   GV P+  T++ L+DG    G ++ A      M    C+   ++Y
Sbjct: 603 GRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTY 662



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/308 (25%), Positives = 134/308 (43%), Gaps = 22/308 (7%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++++L   L K K  +  L +  +++  G+   ++ Y ILI+   + G+  H   +
Sbjct: 517 PDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYTILIDEMLREGKHDHAKRM 576

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +  S   P A  +T  I   C E R+ +A  L  K++  G  P+V+TY+ LI+G   
Sbjct: 577 YNEMTSSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGH 636

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF---------------- 268
            G+   A +  + M       G  C+PN  TY  ++  L K                   
Sbjct: 637 MGYIDRAFSTLKRMV------GASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIE 690

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +D   +L  +M    +NP V TY+SLI GFC A    EA  LL  M  +G+ P+   + +
Sbjct: 691 LDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTL 750

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++   C     ++A   + +M   G  P   ++  L+ G C  G     K LF  +  +G
Sbjct: 751 LIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELG 810

Query: 389 CKHTVFSY 396
             H   ++
Sbjct: 811 YNHDEVAW 818



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 7/271 (2%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
            +   +R  S  L      YN  +    +     +   V  ++++    PD V + ++IK
Sbjct: 17  AIQAIRRTGSARLALSPKCYNFALRSLARFDMTEYMGRVYSQLVQDGLLPDTVTYNTMIK 76

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
             C E  +  A   F  L   G +P   T + L+ G CRTG    A  LF  M       
Sbjct: 77  SYCKEGDLTTAHRYFRLLLEGGLEPETFTCNALVLGYCRTGELRKACWLFLMMPL----- 131

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
            + C+ N  +YT +I GLC    V KA  LFL MK    +P+V  +  LI G C +    
Sbjct: 132 -MGCQRNEYSYTILIQGLCDAKCVRKALVLFLMMKRDGCSPNVRAFTFLISGLCKSGRVG 190

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +A  L   M   GV P V+T+N ++    K G+M++A ++ ELM   G +P+  T++TL+
Sbjct: 191 DARLLFDAMPQNGVVPSVMTYNAMIVGYSKLGRMNDALKIKELMEKNGCHPDDWTYNTLI 250

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            G C   +   A+EL  +    G   TV ++
Sbjct: 251 YGLC-DQKTEEAEELLNNAVKEGFTPTVVTF 280



 Score =  102 bits (254), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 137/314 (43%), Gaps = 15/314 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEA  I D M ++R     + ++ +L   + +   +D    ++  + S+G  P   TY +
Sbjct: 536 NEALPILDQM-SLRGIKCTIFAYTILIDEMLREGKHDHAKRMYNEMTSSGHKPSATTYTV 594

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            IN +CK GR+     ++ ++ R    PD V +  LI G      I  A +   ++    
Sbjct: 595 FINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGAS 654

Query: 208 CKPNVITYSTLINGLCRTG------------HTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           C+PN  TY  L+  L +                ++ L++  ++     K G+   P   T
Sbjct: 655 CEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL--NPTVTT 712

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+++I G CK G +++A  L   M  K ++P+   Y  LI   C    + +A   +  M 
Sbjct: 713 YSSLIAGFCKAGRLEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMS 772

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
           + G QP + ++ +++  LC  G  ++   L   ++  G N +   +  L DG    G V+
Sbjct: 773 ECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKILNDGLLKAGYVD 832

Query: 376 HAKELFVSMESMGC 389
              ++   ME   C
Sbjct: 833 ICFQMLSIMEKRYC 846



 Score = 95.9 bits (237), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 118/274 (43%), Gaps = 22/274 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P  T++ +      K    +    L  ++   G+ PD+ TYNILI+    MG +   F  
Sbjct: 587 PSATTYTVFINSYCKEGRLEDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFST 646

Query: 165 LGRILRSCFTPDAVAF----TSLIKGLCAESRIMEAAALFT------------KLKAFGC 208
           L R++ +   P+   +      L+KG  A  R ++ + ++             ++   G 
Sbjct: 647 LKRMVGASCEPNYWTYCLLLKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGL 706

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P V TYS+LI G C+ G    A  L + M  G G       PN   YT +I   C   F
Sbjct: 707 NPTVTTYSSLIAGFCKAGRLEEACLLLDHMC-GKG-----LSPNEDIYTLLIKCCCDTKF 760

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA      M +    P + +Y  L+ G C   D+ +   L  ++++ G   D V + +
Sbjct: 761 FEKALSFVSIMSECGFQPQLESYRLLVVGLCNEGDFEKVKSLFCDLLELGYNHDEVAWKI 820

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           + D L K G +D   ++L +M  R    ++ T++
Sbjct: 821 LNDGLLKAGYVDICFQMLSIMEKRYCCISSQTYA 854


>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
          Length = 376

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPN   Y+TLINGL    
Sbjct: 119 MAQQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+GLCK     +A  L  ++ DK +NP
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +   +A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 77/304 (25%), Positives = 148/304 (48%), Gaps = 8/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  ++  + SP  +    +L G     K  D    L++ + S G    + ++NI++   
Sbjct: 12  VYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEG-NRSVSSFNIMMRGL 69

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G+V     +   + +S F  D++ +  L+ G C    I ++  +    +  G   + 
Sbjct: 70  FDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAQQKGGVLDA 129

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             YS +INGLC+  +   A+++       NG     CKPN   Y T+I+GL      + A
Sbjct: 130 FAYSAMINGLCKEANLDRAVSVL------NGMIKSGCKPNAHVYNTLINGLVGASKFEDA 183

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F +M   + +P ++TYN+LI+G C    + EA  L+ E++D+G+ P V+T++++M  
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKG 243

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC + K+++A +L   +  +G  P+    + L+ G C  G++  A  L+  M    C   
Sbjct: 244 LCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPN 303

Query: 393 VFSY 396
           + S+
Sbjct: 304 LVSH 307



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 62  DRAS--LEQFLKERCKSSGQ-------GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           DRA   L   +K  CK +         G + A    +A  +F  M  M  SP  +T +N 
Sbjct: 146 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIIT-YNT 204

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K + +    +L K L   GL P + TY++L+   C   +V     +  ++    
Sbjct: 205 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 264

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F PD      LI GLC+  ++  A +L+  +  + C PN+++++TL+ G  + G    AL
Sbjct: 265 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 324

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
            ++  +   NG      +P+ ++Y   + GLC
Sbjct: 325 VIWARILR-NG-----LEPDIISYNITLKGLC 350



 Score = 68.6 bits (166), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ ++ ++ +  ++PD V YN++++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN++M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             +  G     F+Y
Sbjct: 119 MAQQKGGVLDAFAY 132



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N+L   L         LSL+  +N     P+L ++N L+  F K G + +  V+
Sbjct: 267 PDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 326

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
             RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 327 WARILRNGLEPDIISYNITLKGLCSCNRISDA 358


>gi|255549371|ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223545176|gb|EEF46686.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 613

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/304 (30%), Positives = 149/304 (49%), Gaps = 8/304 (2%)

Query: 95  DYMLNM--RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           D ML M  +   P + ++N L     K   ++ V  + + +    +  +  TY +LI  +
Sbjct: 236 DLMLEMTGKGIKPNVVTYNTLVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWY 295

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G+++    V  ++L      D   FTS+I   C    +  A ALF +L   G   N 
Sbjct: 296 GSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANA 355

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
            TY  LI+G C +G    A  L  EM +           N V + T+I+G CK+G +D+A
Sbjct: 356 HTYGALIHGTCNSGQLDAAEMLVNEMQSQG------LDMNLVIFNTLINGYCKKGMIDEA 409

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +   M+ K    D+ TYN++  G C  N   EA   L  M+++GV P+ V+F +++D 
Sbjct: 410 LRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDI 469

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
            CK G + EA R+ + M  +G  PN  T++TL+DG+   G++  A  L   MES+G    
Sbjct: 470 HCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSD 529

Query: 393 VFSY 396
           +++Y
Sbjct: 530 IYTY 533



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 80/276 (28%), Positives = 135/276 (48%), Gaps = 7/276 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +FD  LN R       ++  L      +   D    L   + S GL  +L  +N LI
Sbjct: 339 AFALFDE-LNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLI 397

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           N +CK G +     +   + +  F  D   + ++  GLC  +R  EA      +   G  
Sbjct: 398 NGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVD 457

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN ++++ +I+  C+ G+ + A  +F++M     K      PN VTY T+IDG  K+G +
Sbjct: 458 PNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEK------PNVVTYNTLIDGYSKKGKL 511

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A  L  +M+   +  D+ TY +L+HG C      EA  LL E+  +G+   +VT+  I
Sbjct: 512 KEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAI 571

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
           +  L K G+ +EA RL + M+  G+ P+   +++L+
Sbjct: 572 ISGLSKEGRSEEAFRLYDEMMAAGLTPDDRVYTSLV 607



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 158/342 (46%), Gaps = 20/342 (5%)

Query: 52  LKESLRLTVKDR----ASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPL 107
           + E LRL   D+    A+    L E   SSG+         EA  +F+ ML  R     +
Sbjct: 269 VNEMLRLMEMDKVVYNAATYTLLIEWYGSSGK-------IAEAEKVFEKMLE-RGVEADI 320

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
             F  +     K  +     +LF  LN  GL  + +TY  LI+  C  G++    +++  
Sbjct: 321 HVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTYGALIHGTCNSGQLDAAEMLVNE 380

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG- 226
           +       + V F +LI G C +  I EA  +   ++  G + ++ TY+T+  GLC+   
Sbjct: 381 MQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEKKGFENDIFTYNTIAGGLCKLNR 440

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
           H      LF  +  G         PN V++T +ID  CKEG + +A+ +F  MK K   P
Sbjct: 441 HEEAKRWLFTMVEKG-------VDPNAVSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKP 493

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           +VVTYN+LI G+       EA  L  EM   G+  D+ T+  ++   C  GK++EA  LL
Sbjct: 494 NVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTLVHGECVFGKVEEALTLL 553

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +  +G+  +  T++ ++ G    GR   A  L+  M + G
Sbjct: 554 NEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAG 595



 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 143/288 (49%), Gaps = 6/288 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           ++ LL      +        +F+++   G+  D++ +  +I+  CK+G +   F +   +
Sbjct: 287 TYTLLIEWYGSSGKIAEAEKVFEKMLERGVEADIHVFTSIISWQCKLGNMKRAFALFDEL 346

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                  +A  + +LI G C   ++  A  L  ++++ G   N++ ++TLING C+ G  
Sbjct: 347 NERGLVANAHTYGALIHGTCNSGQLDAAEMLVNEMQSQGLDMNLVIFNTLINGYCKKGMI 406

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             AL + + M     K G   + +  TY TI  GLCK    ++AK     M +K ++P+ 
Sbjct: 407 DEALRMQDVME----KKGF--ENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNA 460

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           V++  +I   C   +  EA  +  +M  +G +P+VVT+N ++D   K GK+ EA RL + 
Sbjct: 461 VSFTIMIDIHCKEGNLVEAERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDE 520

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           M   G+  +  T++TL+ G C+ G+V  A  L   +   G   ++ +Y
Sbjct: 521 MESIGMTSDIYTYTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTY 568



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 77/260 (29%), Positives = 118/260 (45%), Gaps = 14/260 (5%)

Query: 76  SSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNS 135
           +SGQ D   +  NE        +  +     L  FN L     K    D  L +   +  
Sbjct: 367 NSGQLDAAEMLVNE--------MQSQGLDMNLVIFNTLINGYCKKGMIDEALRMQDVMEK 418

Query: 136 TGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIME 195
            G   D++TYN +    CK+ R       L  ++     P+AV+FT +I   C E  ++E
Sbjct: 419 KGFENDIFTYNTIAGGLCKLNRHEEAKRWLFTMVEKGVDPNAVSFTIMIDIHCKEGNLVE 478

Query: 196 AAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVT 255
           A  +F  +K  G KPNV+TY+TLI+G  + G    A  L +EM +      +    +  T
Sbjct: 479 AERVFQDMKKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMES------IGMTSDIYT 532

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           YTT++ G C  G V++A  L  ++  K +   +VTY ++I G        EA  L  EMM
Sbjct: 533 YTTLVHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMM 592

Query: 316 DQGVQPDVVTFNVIMDELCK 335
             G+ PD   +  ++  L K
Sbjct: 593 AAGLTPDDRVYTSLVANLHK 612



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 132/283 (46%), Gaps = 39/283 (13%)

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPD------AVAFTSLIKGLCAESRI 193
           PDL  + ILI+   K    +  FVV+  +L +C+  D         F SLI     E + 
Sbjct: 89  PDLRAHVILISRLFK----ARKFVVMKNVL-TCYAMDKNLRCSVSDFVSLIDNRFHEPKF 143

Query: 194 MEAA-----------ALFTK-LKAF------GCKPNVITYSTLINGLCRTGHTIVALNLF 235
           +E             ++F +  K F      G K +  +    +  L R+   +++L  F
Sbjct: 144 VEKLCDMLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVMSLGFF 203

Query: 236 EEMANGNGKFGVVCKPNTVTY--TTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
           ++M        V  K +   Y  T +IDGLCK+G V++AK+L L+M  K I P+VVTYN+
Sbjct: 204 KKM--------VEFKVDVTVYSMTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNT 255

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L++ +    D+   N +L  M    V  +  T+ ++++    +GK+ EA ++ E M+ RG
Sbjct: 256 LVNAYIKIMDFEGVNEMLRLMEMDKVVYNAATYTLLIEWYGSSGKIAEAEKVFEKMLERG 315

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           V  +   F++++   C  G +  A  LF  +   G      +Y
Sbjct: 316 VEADIHVFTSIISWQCKLGNMKRAFALFDELNERGLVANAHTY 358



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +F  M   +   P + ++N L    +K         L   + S G+  D+YTY  L
Sbjct: 478 EAERVFQDM-KKKGEKPNVVTYNTLIDGYSKKGKLKEAYRLKDEMESIGMTSDIYTYTTL 536

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++  C  G+V     +L  + R       V +T++I GL  E R  EA  L+ ++ A G 
Sbjct: 537 VHGECVFGKVEEALTLLNEVCRKGLAISIVTYTAIISGLSKEGRSEEAFRLYDEMMAAGL 596

Query: 209 KPNVITYSTLINGLCRT 225
            P+   Y++L+  L +T
Sbjct: 597 TPDDRVYTSLVANLHKT 613


>gi|224144580|ref|XP_002325338.1| predicted protein [Populus trichocarpa]
 gi|222862213|gb|EEE99719.1| predicted protein [Populus trichocarpa]
          Length = 481

 Score =  159 bits (402), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 147/276 (53%), Gaps = 6/276 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++N L    +K   Y+    +   + S G+ P+  TYN L++  C  G       +
Sbjct: 195 PDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEI 254

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  + ++   P  V +  LI GLC    +  A   F ++ +  C P++ITY+TL+  LC+
Sbjct: 255 LAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCK 314

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    AL +F  +++ N      C P  +TY T+IDGL + G++D+A +L+ QM +K I
Sbjct: 315 EGMVDEALQVFVLLSDSN------CSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGI 368

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD +T+ SL+ GFC+ +   +A  +L EM  +  + +   + ++++ LC+N ++D A +
Sbjct: 369 APDGITHRSLVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQ 428

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           +LE+MI     P+   +STL+      G V  A EL
Sbjct: 429 VLEMMISGRYKPDEEIYSTLIKSVADAGMVEEADEL 464



 Score =  152 bits (384), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/284 (31%), Positives = 150/284 (52%), Gaps = 10/284 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTV--LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           P L  + +L   + K  H  TV  L + + +   G +PDL TYN L+N   K G+     
Sbjct: 160 PYLIPYTILIELVWK--HCGTVRALEVLEDMAIEGCYPDLVTYNSLVNFASKEGKYEDAA 217

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           +++  IL     P+A+ + SL+  LC+     E   +   +K     P V+TY+ LINGL
Sbjct: 218 LIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGL 277

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A+N F +M + N      C P+ +TY T++  LCKEG VD+A ++F+ + D 
Sbjct: 278 CKCGLVERAINFFVQMVSEN------CSPDIITYNTLLTALCKEGMVDEALQVFVLLSDS 331

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEA 342
           N +P ++TYN++I G       +EA  L  +M+++G+ PD +T   ++   C   ++++A
Sbjct: 332 NCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDA 391

Query: 343 SRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             +L  M  R    N+S +  +++G C   RV+ A ++   M S
Sbjct: 392 VEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMIS 435



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 146/286 (51%), Gaps = 16/286 (5%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM-GRVSHGF 162
           PP + ++N +   L     +D  +  ++     G  P L  Y ILI    K  G V    
Sbjct: 124 PPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALE 183

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
           V+    +  C+ PD V + SL+     E +  +AA +   + + G +PN ITY++L++ L
Sbjct: 184 VLEDMAIEGCY-PDLVTYNSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSL 242

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCK----PNTVTYTTIIDGLCKEGFVDKAKELFLQ 278
           C  G       L++E+   +    ++ K    P  VTY  +I+GLCK G V++A   F+Q
Sbjct: 243 CSCG-------LWDEV---DEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINFFVQ 292

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           M  +N +PD++TYN+L+   C     +EA  + + + D    P ++T+N ++D L + G 
Sbjct: 293 MVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTRRGY 352

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           MDEA +L   MI +G+ P+  T  +L+ GFC   +V  A E+   M
Sbjct: 353 MDEALKLYNQMIEKGIAPDGITHRSLVWGFCWIDQVEDAVEILREM 398



 Score =  142 bits (359), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 150/308 (48%), Gaps = 7/308 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  + D M  +   P    S NL+ G L +    +    + K +  +GL PD+ TYN++
Sbjct: 40  EATKLIDIMSRVNQIPNSTCSTNLIRG-LVRIGRIERASRVLKTMVMSGLVPDVITYNMM 98

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  FCK  ++     +L  +  S   PD + + ++I+ L    +  +A   +      GC
Sbjct: 99  VGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDNGKFDQAVEFWRGQLRRGC 158

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P +I Y+ LI  + +   T+ AL + E+MA         C P+ VTY ++++   KEG 
Sbjct: 159 LPYLIPYTILIELVWKHCGTVRALEVLEDMAIEG------CYPDLVTYNSLVNFASKEGK 212

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            + A  +   +    + P+ +TYNSL+H  C    W+E + +L  M      P VVT+N+
Sbjct: 213 YEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNI 272

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +++ LCK G ++ A      M+    +P+  T++TL+   C  G V+ A ++FV +    
Sbjct: 273 LINGLCKCGLVERAINFFVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSN 332

Query: 389 CKHTVFSY 396
           C   + +Y
Sbjct: 333 CSPGLITY 340



 Score =  114 bits (285), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 129/285 (45%), Gaps = 29/285 (10%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D  T N +++  CK G +     ++  + R    P++   T+LI+GL    RI  A+ + 
Sbjct: 21  DEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIERASRVL 80

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG------------------N 242
             +   G  P+VITY+ ++ G C+      A++L E+M+                    N
Sbjct: 81  KTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTIIRSLFDN 140

Query: 243 GKFGVV-----------CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTY 291
           GKF              C P  + YT +I+ + K     +A E+   M  +   PD+VTY
Sbjct: 141 GKFDQAVEFWRGQLRRGCLPYLIPYTILIELVWKHCGTVRALEVLEDMAIEGCYPDLVTY 200

Query: 292 NSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMIL 351
           NSL++       + +A  ++  ++  G++P+ +T+N ++  LC  G  DE   +L +M  
Sbjct: 201 NSLVNFASKEGKYEDAALIIYNILSHGMEPNAITYNSLLHSLCSCGLWDEVDEILAIMKK 260

Query: 352 RGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               P   T++ L++G C  G V  A   FV M S  C   + +Y
Sbjct: 261 TSHPPTVVTYNILINGLCKCGLVERAINFFVQMVSENCSPDIITY 305



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/251 (27%), Positives = 120/251 (47%), Gaps = 8/251 (3%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L   L     +D V  +   +  T   P + TYNILIN  CK G V      
Sbjct: 230 PNAITYNSLLHSLCSCGLWDEVDEILAIMKKTSHPPTVVTYNILINGLCKCGLVERAINF 289

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             +++    +PD + + +L+  LC E  + EA  +F  L    C P +ITY+T+I+GL R
Sbjct: 290 FVQMVSENCSPDIITYNTLLTALCKEGMVDEALQVFVLLSDSNCSPGLITYNTVIDGLTR 349

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   AL L+ +M            P+ +T+ +++ G C    V+ A E+  +M  ++ 
Sbjct: 350 RGYMDEALKLYNQMIEKG------IAPDGITHRSLVWGFCWIDQVEDAVEILREMGKRDH 403

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG-VQPDVVTFNVIMDELCKNGKMDEAS 343
             +   Y  +I+G C  N   +    ++EMM  G  +PD   ++ ++  +   G ++EA 
Sbjct: 404 RINSSAYRLVINGLC-RNKRVDIAIQVLEMMISGRYKPDEEIYSTLIKSVADAGMVEEAD 462

Query: 344 RLLELMILRGV 354
            L + +I R V
Sbjct: 463 ELHQKLIERKV 473



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 72/151 (47%)

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           G + + +  T   I+  LCK+G + +A +L   M   N  P+     +LI G        
Sbjct: 15  GPLVENDEETNNEILHNLCKKGSLMEATKLIDIMSRVNQIPNSTCSTNLIRGLVRIGRIE 74

Query: 306 EANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            A+ +L  M+  G+ PDV+T+N+++   CK  ++  A  LLE M L G  P+  T++T++
Sbjct: 75  RASRVLKTMVMSGLVPDVITYNMMVGGFCKRRQLRSAIDLLEDMSLSGCPPDVITYNTII 134

Query: 366 DGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                 G+ + A E +      GC   +  Y
Sbjct: 135 RSLFDNGKFDQAVEFWRGQLRRGCLPYLIPY 165



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 74/164 (45%), Gaps = 1/164 (0%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  +L+     P L ++N +   L +  + D  L L+ ++   G+ PD  T+  
Sbjct: 319 DEALQVF-VLLSDSNCSPGLITYNTVIDGLTRRGYMDEALKLYNQMIEKGIAPDGITHRS 377

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+  FC + +V     +L  + +     ++ A+  +I GLC   R+  A  +   + +  
Sbjct: 378 LVWGFCWIDQVEDAVEILREMGKRDHRINSSAYRLVINGLCRNKRVDIAIQVLEMMISGR 437

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
            KP+   YSTLI  +   G    A  L +++        ++ KP
Sbjct: 438 YKPDEEIYSTLIKSVADAGMVEEADELHQKLIERKVLRTILDKP 481


>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
          Length = 376

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 150/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPNV  Y+TLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+GLCK     +A  L  ++ DK ++P
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +    A  L  +++ +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNGLEPDIISY 342



 Score =  127 bits (320), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 79/304 (25%), Positives = 147/304 (48%), Gaps = 8/304 (2%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           ++  ++  + SP  +    +L G     K  D    L++ + S G    + ++NI++   
Sbjct: 12  VYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDC-FELWEMMGSEG-NRSVSSFNIMMRGL 69

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G+V     +   +  S F  D++ +  L+ G C    I ++  +    +  G   + 
Sbjct: 70  FDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGGVLDA 129

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
             YS +INGLC+  +   AL++       NG     CKPN   Y T+I+GL      + A
Sbjct: 130 FAYSAMINGLCKEANLDRALSVL------NGMIKSGCKPNVHVYNTLINGLAGASKFEDA 183

Query: 273 KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
             +F +M   + +P ++TYN+LI+G C    + EA  L+ E++D+G+ P V+T++++M  
Sbjct: 184 IRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKG 243

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHT 392
           LC + K++ A +L   +I +G  P+    + L+ G C  G++  A  L+  M    C   
Sbjct: 244 LCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPN 303

Query: 393 VFSY 396
           + S+
Sbjct: 304 LVSH 307



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 114/221 (51%), Gaps = 6/221 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   LA    ++  + +F+ + +    P + TYN LIN  CK       + +
Sbjct: 162 PNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAYNL 221

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L     P  + ++ L+KGLC + ++  A  L+ ++ + G KP+V  ++ LI+GLC 
Sbjct: 222 VKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDVQMHNILIHGLCS 281

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL+L+ +M          C PN V++ T+++G  K+G +  A  ++ ++    +
Sbjct: 282 VGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRNALMIWARILRNGL 335

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            PD+++YN  + G C  N  ++A   L + + + + P  +T
Sbjct: 336 EPDIISYNITLKGLCSCNRISDAILFLHDAVTKKIVPTKIT 376



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ ++ ++ +  ++PD V YN++++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN++M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             E  G     F+Y
Sbjct: 119 MAEQKGGVLDAFAY 132


>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
          Length = 687

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/335 (28%), Positives = 160/335 (47%), Gaps = 29/335 (8%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           Q  + A    EA  +   M      PP   S+N++   + +       + +F  +    +
Sbjct: 168 QACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTERAV 227

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+  TYN +I+   K G +  GF +  +++     P+A+ +  L+ GLC   R+ E +A
Sbjct: 228 LPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCRAGRMGETSA 287

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF-EEMANG---------------- 241
           L  ++ +    P+  TYS L +GL R G +   L+LF + + NG                
Sbjct: 288 LLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLC 347

Query: 242 -NGKFGVVCK-----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            +GK  +  +           P  V Y T+I+G C+ G ++ A   F QMK ++I PD +
Sbjct: 348 KDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHI 407

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI+G C A     A  LL+EM D GV P V TFN ++D   + G++++   +L  M
Sbjct: 408 TYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEM 467

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
              G+ PN  ++ ++++ FC  G++  A  +   M
Sbjct: 468 QENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM 502



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 91/317 (28%), Positives = 160/317 (50%), Gaps = 12/317 (3%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           GD+ A      F + D M+     P  +T +N+L   L +        +L   + S  + 
Sbjct: 245 GDLEA-----GFSLRDQMVCHGLKPNAIT-YNVLLSGLCRAGRMGETSALLDEMASQKMV 298

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
           PD +TY+IL +   + G       + G+ L++  T      + L+ GLC + ++  A  +
Sbjct: 299 PDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYTCSILLNGLCKDGKVSIAEEV 358

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
              L   G  P  + Y+TLING C+TG    A + F +M + +       KP+ +TY  +
Sbjct: 359 LQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKSRH------IKPDHITYNAL 412

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           I+GLCK   +  A++L ++M+D  +NP V T+N+LI  +       +   +L EM + G+
Sbjct: 413 INGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGL 472

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
           +P+VV++  I++  CKNGK+ EA  +L+ M  + V PN   ++ ++D +   G  + A  
Sbjct: 473 KPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFI 532

Query: 380 LFVSMESMGCKHTVFSY 396
           L   M+S G   ++ +Y
Sbjct: 533 LVEKMKSNGISPSIVTY 549



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/286 (28%), Positives = 140/286 (48%), Gaps = 6/286 (2%)

Query: 111 NLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILR 170
           ++L   L K         + + L + GL P    YN LIN +C+ G +   F   G++  
Sbjct: 340 SILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGYCQTGELEGAFSTFGQMKS 399

Query: 171 SCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
               PD + + +LI GLC   RI  A  L  +++  G  P V T++TLI+   RTG    
Sbjct: 400 RHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEK 459

Query: 231 ALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVT 290
              +  EM   NG      KPN V+Y +I++  CK G + +A  +   M  K++ P+   
Sbjct: 460 CFIVLSEMQE-NG-----LKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPNAQV 513

Query: 291 YNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
           YN++I  +      ++A  L+ +M   G+ P +VT+N+++  LC   ++ EA  ++  + 
Sbjct: 514 YNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLS 573

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
              + P+  +++TL+   C  G ++ A +L   M   G K TV +Y
Sbjct: 574 NHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTY 619



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 133/280 (47%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N L     +T   +   S F ++ S  + PD  TYN LIN  CK  R+++   +
Sbjct: 369 PTRVIYNTLINGYCQTGELEGAFSTFGQMKSRHIKPDHITYNALINGLCKAERITNAQDL 428

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  +   P    F +LI       ++ +   + ++++  G KPNV++Y +++N  C+
Sbjct: 429 LMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCK 488

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A+ + ++M      F     PN   Y  IID   + G  D+A  L  +MK   I
Sbjct: 489 NGKIPEAVAILDDM------FHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGI 542

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +P +VTYN LI G C  +  +EA  ++  + +  + PD V++N ++   C  G +D+A  
Sbjct: 543 SPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALD 602

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           L + M   G+     T+  L+ G    GR+   + L+  M
Sbjct: 603 LQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKM 642



 Score =  122 bits (305), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 139/295 (47%), Gaps = 7/295 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF  F  M +    P  +T +N L   L K +       L   +   G+ P + T+N LI
Sbjct: 390 AFSTFGQMKSRHIKPDHIT-YNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLI 448

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + + + G++   F+VL  +  +   P+ V++ S++   C   +I EA A+   +      
Sbjct: 449 DAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVL 508

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
           PN   Y+ +I+     G    A  L E+M + NG       P+ VTY  +I GLC +  +
Sbjct: 509 PNAQVYNAIIDAYVEHGPNDQAFILVEKMKS-NG-----ISPSIVTYNLLIKGLCNQSQI 562

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
            +A+E+   + +  + PD V+YN+LI   CY  + ++A  L   M   G++  V T++ +
Sbjct: 563 SEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQL 622

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           +  L   G++ E   L + M+   V P+ +  + +++ +   G    A++L   M
Sbjct: 623 ISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 677



 Score =  112 bits (279), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 125/276 (45%), Gaps = 9/276 (3%)

Query: 124 DTVLSLFKRL--NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
           D  L L   L   +    P L + N+L+     +GR +      G +  +   PD  A+ 
Sbjct: 105 DGALRLLSDLADEARAPLPSLSSCNLLLEALLSLGRHADVRRAFGILASAGARPDTFAWN 164

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKP-NVITYSTLINGLCRTGHTIVALNLFEEMAN 240
             ++   A   + EA  +  ++   G  P N  +Y+ +I G+ R G    A+ +F+EM  
Sbjct: 165 KAVQACVAAGDLGEAVGMLRRMGRDGAPPPNAFSYNVVIAGMWRAGRGGDAVEVFDEMTE 224

Query: 241 GNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     PN +TY T+IDG  K G ++    L  QM    + P+ +TYN L+ G C 
Sbjct: 225 ------RAVLPNHITYNTMIDGHIKGGDLEAGFSLRDQMVCHGLKPNAITYNVLLSGLCR 278

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           A    E + LL EM  Q + PD  T++++ D L +NG       L    +  GV     T
Sbjct: 279 AGRMGETSALLDEMASQKMVPDGFTYSILFDGLSRNGDSKAMLSLFGKSLKNGVTIGDYT 338

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            S L++G C  G+V+ A+E+  S+ + G   T   Y
Sbjct: 339 CSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIY 374



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/248 (26%), Positives = 110/248 (44%), Gaps = 6/248 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L     +T   +    +   +   GL P++ +Y  ++N FCK G++     +
Sbjct: 439 PTVETFNTLIDAYGRTGQLEKCFIVLSEMQENGLKPNVVSYGSIVNAFCKNGKIPEAVAI 498

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +      P+A  + ++I          +A  L  K+K+ G  P+++TY+ LI GLC 
Sbjct: 499 LDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGLCN 558

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  +   ++N          P+ V+Y T+I   C  G +DKA +L  +M    I
Sbjct: 559 QSQISEAEEIINSLSNHR------LIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 612

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              V TY+ LI G   A    E   L  +MM   V P     N++++   K G   +A  
Sbjct: 613 KSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNNVVPSNAIHNIMVEAYSKYGNEIKAED 672

Query: 345 LLELMILR 352
           L + M+ +
Sbjct: 673 LRKEMLQK 680



 Score = 82.8 bits (203), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 7/199 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  I D M + +   P    +N +     +    D    L +++ S G+ P + TYN+L
Sbjct: 494 EAVAILDDMFH-KDVLPNAQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLL 552

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I   C   ++S    ++  +      PDAV++ +LI   C    I +A  L  ++  +G 
Sbjct: 553 IKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRMHKYGI 612

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           K  V TY  LI+GL   G  I    L+++M   N    VV  P+   +  +++   K G 
Sbjct: 613 KSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQNN----VV--PSNAIHNIMVEAYSKYGN 666

Query: 269 VDKAKELFLQMKDKNINPD 287
             KA++L  +M  K  N D
Sbjct: 667 EIKAEDLRKEMLQKRNNHD 685



 Score = 55.8 bits (133), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/153 (24%), Positives = 67/153 (43%), Gaps = 2/153 (1%)

Query: 87  PN-EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           PN +AF + + M +   SP  + ++NLL   L           +   L++  L PD  +Y
Sbjct: 526 PNDQAFILVEKMKSNGISPS-IVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSY 584

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
           N LI+  C  G +     +  R+ +         +  LI GL    R++E   L+ K+  
Sbjct: 585 NTLISACCYRGNIDKALDLQQRMHKYGIKSTVRTYHQLISGLGGAGRLIEMEYLYQKMMQ 644

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEM 238
               P+   ++ ++    + G+ I A +L +EM
Sbjct: 645 NNVVPSNAIHNIMVEAYSKYGNEIKAEDLRKEM 677


>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
 gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
          Length = 924

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/280 (31%), Positives = 140/280 (50%), Gaps = 6/280 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ L     K +  ++   + + +  TG   ++ TYN LI   C+ G +   F  
Sbjct: 241 PDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGAIEEAFGY 300

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD   + ++I GLC   R  +A  L  ++   G  PNV+ YSTLI+G  R
Sbjct: 301 KKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMR 360

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G+   A  + +EM+          +PN +TY  +I GLCK G + +A  +  QM     
Sbjct: 361 QGNADEAFKIVKEMSAAG------VQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGY 414

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
             D +TYN +I G    ++  EA  LL EM   G+ P+V T+++I++ LC+ G+ + AS 
Sbjct: 415 MADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERASG 474

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           LLE MI  G+ PN   ++ L+ G+C  G  + A E    M
Sbjct: 475 LLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKM 514



 Score =  149 bits (375), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 146/283 (51%), Gaps = 9/283 (3%)

Query: 87  PNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYN 146
           P++A C+ D M +     P +  ++ L     +  + D    + K +++ G+ P+  TY+
Sbjct: 329 PDQAKCLLDEM-SCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYD 387

Query: 147 ILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAF 206
            LI   CK+GR+     +L ++ +  +  D + +  +I+G   +    EA  L  +++  
Sbjct: 388 NLIRGLCKLGRMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKG 447

Query: 207 GCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCK 265
           G  PNV TYS +INGLC+ G +  A  L E+M A+G        KPN   Y  +I G C+
Sbjct: 448 GISPNVYTYSIIINGLCQIGESERASGLLEQMIADG-------LKPNAFVYAPLISGYCR 500

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG    A E   +M  +N+ PD+  YNSLI G       +EA     EM+++G QP+  T
Sbjct: 501 EGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFT 560

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
           +  ++      G +++A +LL  M+  G+NPN   ++ +++G+
Sbjct: 561 YGGLIHGYSMAGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGY 603



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 143/321 (44%), Gaps = 33/321 (10%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           + ++N L G L +    +      K +   GL PD +TY  +IN  CK GR      +L 
Sbjct: 278 VVTYNTLIGGLCRAGAIEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLD 337

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +  +   P+ V +++LI G   +    EA  +  ++ A G +PN ITY  LI GLC+ G
Sbjct: 338 EMSCAGLMPNVVVYSTLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLG 397

Query: 227 HTIVALNLFEEMA-------------------------------NGNGKFGVVCKPNTVT 255
               A  + ++M                                N   K G+   PN  T
Sbjct: 398 RMGRASRILKQMTKIGYMADTMTYNLVIEGHLRQHNKEEAFLLLNEMRKGGI--SPNVYT 455

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
           Y+ II+GLC+ G  ++A  L  QM    + P+   Y  LI G+C    ++ A   L +M 
Sbjct: 456 YSIIINGLCQIGESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMT 515

Query: 316 DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
            + + PD+  +N ++  L   GKMDEA    + M+ +G  PN  T+  L+ G+ + G + 
Sbjct: 516 RENLTPDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLE 575

Query: 376 HAKELFVSMESMGCKHTVFSY 396
            A++L   M + G     F Y
Sbjct: 576 KAEQLLHQMLNSGLNPNDFIY 596



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 85/302 (28%), Positives = 146/302 (48%), Gaps = 14/302 (4%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +   MLN   +P       +L G   K+ + + V S  K +   GL PD   Y I+I+  
Sbjct: 580 LLHQMLNSGLNPNDFIYAQILEGYF-KSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNL 638

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
              G +     VL  I ++   PD++ + SLI G C  + + +A  L  ++   G +P +
Sbjct: 639 SSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGI 698

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK---PNTVTYTTIIDGLCKEGFV 269
             Y+ LI+G C++     A N+F           ++CK   PN VTYTT+IDG CK G +
Sbjct: 699 SCYNALIDGFCKSDDISHARNIFNS---------IICKGLPPNCVTYTTLIDGYCKAGDI 749

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
             A +L+ +M  + + PD   Y+ L  G   + D  +A  +  EM+ +G    + +FN +
Sbjct: 750 RDAIDLYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-ISSFNTL 808

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +   CK GK+ E  + L +M+ + + P+  T   ++ G    G+++ A  +FV ++    
Sbjct: 809 VHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNA 868

Query: 390 KH 391
            H
Sbjct: 869 SH 870



 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 153/353 (43%), Gaps = 42/353 (11%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +G +      EAF + + M     SP   T ++++   L +    +    L +++ + GL
Sbjct: 426 EGHLRQHNKEEAFLLLNEMRKGGISPNVYT-YSIIINGLCQIGESERASGLLEQMIADGL 484

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P+ + Y  LI+ +C+ G  S     L ++ R   TPD   + SLI GL    ++ EA  
Sbjct: 485 KPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNVGKMDEAIE 544

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
            + ++   G +PN  TY  LI+G    G+   A  L  +M N          PN   Y  
Sbjct: 545 YYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLNSG------LNPNDFIYAQ 598

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPD------------------------------- 287
           I++G  K   ++K       M +K + PD                               
Sbjct: 599 ILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQAAVSVLSVIEKNG 658

Query: 288 ----VVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEAS 343
                + Y SLI GFC A D  +A  LL EM  +G++P +  +N ++D  CK+  +  A 
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHAR 718

Query: 344 RLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +   +I +G+ PN  T++TL+DG+C  G +  A +L+  M + G     F Y
Sbjct: 719 NIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVY 771



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/308 (27%), Positives = 139/308 (45%), Gaps = 24/308 (7%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           +A  + D M+   P+PP + S                  S+ + L+ +         ++L
Sbjct: 138 QANGLLDQMIRAYPTPPLVLS------------------SVHRALSGSDQGRRPVVLDVL 179

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ + K GRV  G  V+  +      P       L+K L     +     +   ++  G 
Sbjct: 180 VDTYKKTGRVRDGAEVVLLMKDLGLAPSLRCCNGLLKDLLRADALDLLWKVRGFMEGAGI 239

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V TYSTLI   C+      A  + EEM          C  N VTY T+I GLC+ G 
Sbjct: 240 SPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETG------CSLNVVTYNTLIGGLCRAGA 293

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +++A     +M+D  + PD  TY ++I+G C     ++A CLL EM   G+ P+VV ++ 
Sbjct: 294 IEEAFGYKKEMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYST 353

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++D   + G  DEA ++++ M   GV PN  T+  L+ G C  GR+  A  +   M  +G
Sbjct: 354 LIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIG 413

Query: 389 CKHTVFSY 396
                 +Y
Sbjct: 414 YMADTMTY 421



 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 140/291 (48%), Gaps = 8/291 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L  +N L   L+     D  +  +  +   G  P+ +TY  LI+ +   G +     +
Sbjct: 521 PDLYCYNSLIIGLSNVGKMDEAIEYYDEMLEKGFQPNDFTYGGLIHGYSMAGNLEKAEQL 580

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++L S   P+   +  +++G      + + ++    +   G  P+   Y  +I+ L  
Sbjct: 581 LHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSS 640

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           +GH   A+++   +     K G+V  P+++ Y ++I G CK   ++KA  L  +M  K I
Sbjct: 641 SGHMQAAVSVLSVIE----KNGLV--PDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGI 694

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P +  YN+LI GFC ++D + A  +   ++ +G+ P+ VT+  ++D  CK G + +A  
Sbjct: 695 EPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAID 754

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFS 395
           L   M+  GV P+   +S L  G   +G +  A  LF++ E +   + + S
Sbjct: 755 LYNEMLTEGVAPDAFVYSVLAAGCSNSGDLQQA--LFITEEMIARGYAIIS 803



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 124/272 (45%), Gaps = 34/272 (12%)

Query: 107 LTSFNLLFGCLA----KTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           L   +L++G L     K    +  + L   +   G+ P +  YN LI+ FCK   +SH  
Sbjct: 659 LVPDSLIYGSLISGFCKAADMEKAVGLLDEMAKKGIEPGISCYNALIDGFCKSDDISHAR 718

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
            +   I+     P+ V +T+LI G C    I +A  L+ ++   G  P+   YS L  G 
Sbjct: 719 NIFNSIICKGLPPNCVTYTTLIDGYCKAGDIRDAIDLYNEMLTEGVAPDAFVYSVLAAGC 778

Query: 223 CRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKD 281
             +G    AL + EEM A G   + ++      ++ T++ G CK G + +  +    M D
Sbjct: 779 SNSGDLQQALFITEEMIARG---YAIIS-----SFNTLVHGFCKRGKLQETVKFLHVMMD 830

Query: 282 KNINPDVVTYNSLIHGFCYANDWNEANCLLIE--------------------MMDQGVQP 321
           K+I P ++T  +++ G   A   +EA+ + +E                    M++QG+ P
Sbjct: 831 KDIVPSLLTVENIVIGLGEAGKLSEAHTIFVELQQKNASHRDTDHLSSLFTDMINQGLVP 890

Query: 322 DVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
             V  N+I    CK G +D+A  L + ++ +G
Sbjct: 891 LDVIHNMIQSH-CKQGYLDKALMLHDALVAKG 921


>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65560-like [Brachypodium distachyon]
          Length = 739

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 149/292 (51%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L          +  + +F+R++  G  P++ TY  LI+ FCK  ++    ++
Sbjct: 210 PNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMML 269

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             R++ +   P+ V +T+LI+G C++ ++  A  L   ++  G  PN  T S LI+ LC+
Sbjct: 270 FSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCK 329

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A  L   +           K N + YT++IDGLCK G    A  L   +  +  
Sbjct: 330 HERVGEAQLLLGSLIQKG------IKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQGF 383

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD  TY+SLI G C   + +EA  +L +MM++GVQP  VT+ +I+DEL +    D + +
Sbjct: 384 VPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKK 443

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +L+ MI  G+ P+  T++  +  +C  GR+  A+ + + M   G    + +Y
Sbjct: 444 ILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTY 495



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 96/296 (32%), Positives = 150/296 (50%), Gaps = 21/296 (7%)

Query: 99  NMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRV 158
           N+R     + ++ L     A  +H  ++L         G  PD + Y   +  +C+ G +
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLR-------AGFAPDSHAYTSFVVGYCRAGLL 123

Query: 159 SHG---FVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           +H    FV++   LR C    A  +T+L+ GLC    + EA ++F  ++A GC P+   Y
Sbjct: 124 AHACRLFVLMP--LRGCVRT-AFTYTALLHGLCGAGMVREAMSVFAGMQADGCAPDPHVY 180

Query: 216 STLINGLCRTGHTIVALNLFEE-MANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           +T+++GLC  G T  A  L  + MA G        +PN V Y  +IDG C  G ++ A +
Sbjct: 181 ATMVHGLCGAGRTREAETLLSDAMAEG-------FEPNVVVYNALIDGYCNVGDLELAVD 233

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F +M     +P+V TY  LI GFC +   + A  L   M+D G+ P+VVT+  ++   C
Sbjct: 234 VFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQC 293

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            +G++D A RLL+ M   G+ PN  T S L+D  C   RV  A+ L  S+   G K
Sbjct: 294 SDGQLDCAYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIK 349



 Score =  147 bits (372), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 145/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L     K++  D  + LF R+   GL P++ TY  LI   C  G++   + +
Sbjct: 245 PNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDCAYRL 304

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  +  S   P+    + LI  LC   R+ EA  L   L   G K N I Y++LI+GLC+
Sbjct: 305 LQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCK 364

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A  L + + +     G V  P+  TY+++IDGLC++  + +A  +   M +K +
Sbjct: 365 AGRFAAADRLMQTLVSQ----GFV--PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGV 418

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P  VTY  +I         + +  +L +M+  G++PDV T+ + +   C  G+M++A  
Sbjct: 419 QPSPVTYTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEH 478

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++  M+  GV PN  T++ L+ G+   G  + A   F  M + GCK    SY
Sbjct: 479 MMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESY 530



 Score =  141 bits (356), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 143/278 (51%), Gaps = 7/278 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A  +F  M++    P  +T   L+ G  +  +  D    L + + ++GL P+ +T ++
Sbjct: 264 DRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQ-LDCAYRLLQSMENSGLVPNEWTCSV 322

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+  CK  RV    ++LG +++     + + +TSLI GLC   R   A  L   L + G
Sbjct: 323 LIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLIDGLCKAGRFAAADRLMQTLVSQG 382

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+  TYS+LI+GLCR      A+ + ++M       GV  +P+ VTYT IID L +E 
Sbjct: 383 FVPDAHTYSSLIDGLCRQKELSEAMLVLDDMMEK----GV--QPSPVTYTIIIDELVREV 436

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D +K++  +M    I PDV TY   +  +C+     +A  +++ M+D GV P++VT+N
Sbjct: 437 GADGSKKILDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYN 496

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            ++      G   +A    + M+  G  PN  +++ L+
Sbjct: 497 ALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLL 534



 Score =  115 bits (288), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 111/256 (43%), Gaps = 41/256 (16%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           +L TY  LIN +C  G +      L  +LR+ F PD+ A+TS                  
Sbjct: 71  NLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSF----------------- 113

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
                             + G CR G    A  LF  M          C     TYT ++
Sbjct: 114 ------------------VVGYCRAGLLAHACRLFVLMPLRG------CVRTAFTYTALL 149

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
            GLC  G V +A  +F  M+     PD   Y +++HG C A    EA  LL + M +G +
Sbjct: 150 HGLCGAGMVREAMSVFAGMQADGCAPDPHVYATMVHGLCGAGRTREAETLLSDAMAEGFE 209

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           P+VV +N ++D  C  G ++ A  + E M + G +PN  T++ L+ GFC + +++ A  L
Sbjct: 210 PNVVVYNALIDGYCNVGDLELAVDVFERMDVNGCSPNVRTYTELISGFCKSRKLDRAMML 269

Query: 381 FVSMESMGCKHTVFSY 396
           F  M   G    V +Y
Sbjct: 270 FSRMVDAGLVPNVVTY 285



 Score =  103 bits (257), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/309 (23%), Positives = 136/309 (44%), Gaps = 11/309 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  + D M+     P P+T + ++   L +    D    +  ++ + G+ PD++TY I
Sbjct: 404 SEAMLVLDDMMEKGVQPSPVT-YTIIIDELVREVGADGSKKILDKMIAAGIKPDVFTYTI 462

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            +  +C  GR+     ++  ++     P+ V + +LI G        +A + F  + A G
Sbjct: 463 FVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYANLGLTSQAFSTFKHMVANG 522

Query: 208 CKPNVITYSTLINGLCRTGHT------IVALNLFEEMANGNGKFGVVCK---PNTV-TYT 257
           CKPN  +Y+ L+  L +   +       V++    EM   +G    + K   P+ +  Y 
Sbjct: 523 CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYN 582

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
             +  LC+   +D+AK L ++M+  N+ P    Y S+I   C      EA   +  M+  
Sbjct: 583 CFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALTFVDSMVKS 642

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G  P + ++  I+  LC+ G +  A ++   M+ +  N     +  L+DG    G V   
Sbjct: 643 GYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAEC 702

Query: 378 KELFVSMES 386
             L   ME 
Sbjct: 703 SSLLSVMEE 711



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/299 (23%), Positives = 126/299 (42%), Gaps = 24/299 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   +++ L   L + K     + +   +   G+ P   TY I+I+   +         +
Sbjct: 385 PDAHTYSSLIDGLCRQKELSEAMLVLDDMMEKGVQPSPVTYTIIIDELVREVGADGSKKI 444

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +++ +   PD   +T  ++  C E R+ +A  +   +   G  PN++TY+ LI G   
Sbjct: 445 LDKMIAAGIKPDVFTYTIFVRSYCHEGRMEDAEHMMLHMVDHGVCPNLVTYNALICGYAN 504

Query: 225 TGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGF----------VDKAK 273
            G T  A + F+ M ANG       CKPN  +YT ++  L K+            + K  
Sbjct: 505 LGLTSQAFSTFKHMVANG-------CKPNEESYTVLLRLLIKKESSNNIPANSVSIWKIA 557

Query: 274 E------LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           E      L  +M    +  ++  YN  +   C  +  +EA  LLIEM    + P    + 
Sbjct: 558 EMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYT 617

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            I+   C+   + EA   ++ M+  G  P   ++  ++   C  G +  AK++F  M S
Sbjct: 618 SIIACCCRLKMLTEALTFVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLS 676



 Score = 63.2 bits (152), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 101/256 (39%), Gaps = 22/256 (8%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCK---------- 154
           P L ++N L    A         S FK + + G  P+  +Y +L+    K          
Sbjct: 490 PNLVTYNALICGYANLGLTSQAFSTFKHMVANGCKPNEESYTVLLRLLIKKESSNNIPAN 549

Query: 155 ------MGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
                 +  + +   +L  +++     +   +   +  LC   R+ EA  L  ++++   
Sbjct: 550 SVSIWKIAEMKYLHGLLEEMVKLQLPSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANL 609

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+   Y+++I   CR      AL   + M     K G +  P   +Y  II  LC+EG 
Sbjct: 610 TPSEDVYTSIIACCCRLKMLTEALTFVDSMV----KSGYI--PQLESYRHIISSLCEEGS 663

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
           +  AK++F  M  K  N + + +  LI G        E + LL  M ++  +P    +  
Sbjct: 664 IQTAKQVFGDMLSKEYNYEEIAWRILIDGLLQKGYVAECSSLLSVMEEKNYRPSDALYAR 723

Query: 329 IMDELCKNGKMDEASR 344
           +  ++     + E +R
Sbjct: 724 LTGKITDANDIQEIAR 739



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/139 (21%), Positives = 55/139 (39%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           P  +  +N     L +    D    L   + S  L P    Y  +I C C++  ++    
Sbjct: 575 PSEIDIYNCFLTSLCRVDRLDEAKILLIEMQSANLTPSEDVYTSIIACCCRLKMLTEALT 634

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
            +  +++S + P   ++  +I  LC E  I  A  +F  + +       I +  LI+GL 
Sbjct: 635 FVDSMVKSGYIPQLESYRHIISSLCEEGSIQTAKQVFGDMLSKEYNYEEIAWRILIDGLL 694

Query: 224 RTGHTIVALNLFEEMANGN 242
           + G+     +L   M   N
Sbjct: 695 QKGYVAECSSLLSVMEEKN 713


>gi|359493281|ref|XP_002272603.2| PREDICTED: pentatricopeptide repeat-containing protein At5g55840-like
            [Vitis vinifera]
          Length = 2037

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/284 (32%), Positives = 142/284 (50%), Gaps = 6/284 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + +FN+L   L    +     +L K++   G  P + TYN L+N +CK GR      +
Sbjct: 982  PNVGTFNILINGLCVEGNLKKAGNLLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIEL 1041

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            +  ++      D   +   I  LC   R  +A  L  K++     PN +TY+TLING  +
Sbjct: 1042 IDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLLLKKMRKEMISPNEVTYNTLINGFVK 1101

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             G   VA  +F EM+    KF +   PN VTY  +I G C  G  ++A  L   M+   +
Sbjct: 1102 EGKIGVAAQVFNEMS----KFDL--SPNCVTYNALIGGHCHVGDFEEALRLLDHMEAAGL 1155

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
              + VTY +L++G C    +  A  LL  M    +    + + V++D LCKNG +DEA +
Sbjct: 1156 RLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIAYTVLIDGLCKNGMLDEAVQ 1215

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            L+  M   GVNP+  T+S+L++GFC  G +  AKE+   M   G
Sbjct: 1216 LVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMYRSG 1259



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 83/313 (26%), Positives = 144/313 (46%), Gaps = 29/313 (9%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + ++N L     K   Y   + L   +   G+  D+ TYN+ I+  C   R +  +++
Sbjct: 1017 PTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLCTNHRSAKAYLL 1076

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            L ++ +   +P+ V + +LI G   E +I  AA +F ++  F   PN +TY+ LI G C 
Sbjct: 1077 LKKMRKEMISPNEVTYNTLINGFVKEGKIGVAAQVFNEMSKFDLSPNCVTYNALIGGHCH 1136

Query: 225  TGHTIVALNLFEEMANGNGKFGVV---------CKPNT--------------------VT 255
             G    AL L + M     +   V         CK                       + 
Sbjct: 1137 VGDFEEALRLLDHMEAAGLRLNEVTYGTLLNGLCKHEKFELAKRLLERMRVNDMVVGHIA 1196

Query: 256  YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMM 315
            YT +IDGLCK G +D+A +L   M    +NPDV+TY+SLI+GFC   +   A  ++  M 
Sbjct: 1197 YTVLIDGLCKNGMLDEAVQLVGNMYKDGVNPDVITYSSLINGFCRVGNIKSAKEIICRMY 1256

Query: 316  DQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVN 375
              G+  + + ++ ++   C++G + EA ++  +M   G   +  T + L+   C  G++ 
Sbjct: 1257 RSGLVLNKIIYSTLIYNFCQHGNVTEAMKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLG 1316

Query: 376  HAKELFVSMESMG 388
             A++    M  +G
Sbjct: 1317 EAEKFLCHMSRIG 1329



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/316 (30%), Positives = 150/316 (47%), Gaps = 10/316 (3%)

Query: 74   CKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRL 133
            C  +G G I    P  AF  FD M+     P   T  +LL G L K  +         RL
Sbjct: 1339 CIINGYGSIG--DPLNAFSFFDDMIKCGQHPSFFTYGSLLKG-LCKGGNLVEAKKFLNRL 1395

Query: 134  NSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRI 193
            +      D   YN L+   CK G +     +  +++++   PD+  ++SL+ GLC + + 
Sbjct: 1396 HYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKA 1455

Query: 194  MEAAALFTKLKAFGCK-PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPN 252
            + A  LF      G   PN + Y+ L++GL + GH   A   FEEM          C P+
Sbjct: 1456 VTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKG-----TC-PD 1509

Query: 253  TVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLI 312
            TV +  IID   + G + KA + F  M+   + P++ TYN L+HGF           L  
Sbjct: 1510 TVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYS 1569

Query: 313  EMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
             MM +G+ PD +TF+ ++  L K+G  D   +LL  MI+ G   +  TF+ L++ +  +G
Sbjct: 1570 TMMREGIFPDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSESG 1629

Query: 373  RVNHAKELFVSMESMG 388
            ++  A +L   M ++G
Sbjct: 1630 KMRKAFDLVNFMNTLG 1645



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 150/327 (45%), Gaps = 14/327 (4%)

Query: 62   DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
            D       L E CKS   G++     +EA  +FD M+     P   T  +LL G   K K
Sbjct: 1403 DSVMYNTLLAETCKS---GNL-----HEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGK 1454

Query: 122  HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
                V      +    LFP+   Y  L++   K G     F     +++    PD VAF 
Sbjct: 1455 AVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFN 1514

Query: 182  SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
            ++I       ++M+A   F+ ++ +G  PN+ TY+ L++G  +    +  L+L+  M   
Sbjct: 1515 AIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGFSKKQALLRYLSLYSTMMR- 1573

Query: 242  NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
             G F     P+ +T+ ++I GL K G  D   +L  +M  +    D  T+N LI+ +  +
Sbjct: 1574 EGIF-----PDKLTFHSLILGLSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKYSES 1628

Query: 302  NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
                +A  L+  M   GV PD  T+N I + L K     E++ +L  M+  GV P  + +
Sbjct: 1629 GKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKHAQY 1688

Query: 362  STLMDGFCLTGRVNHAKELFVSMESMG 388
             TL++G C  G +  A +L   ME++G
Sbjct: 1689 ITLINGMCRVGDIQGAFKLKDEMEALG 1715



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 7/238 (2%)

Query: 132  RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
             ++  GL P+  TY+ +IN +  +G   + F     +++    P    + SL+KGLC   
Sbjct: 1324 HMSRIGLVPNSITYDCIINGYGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGG 1383

Query: 192  RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
             ++EA     +L       + + Y+TL+   C++G+   A+ LF++M   N        P
Sbjct: 1384 NLVEAKKFLNRLHYIPGAVDSVMYNTLLAETCKSGNLHEAVALFDKMVQNN------VLP 1437

Query: 252  NTVTYTTIIDGLCKEGFVDKAKELF-LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
            ++ TY++++ GLC++G    A  LF   M    + P+ V Y  L+ G   A     A   
Sbjct: 1438 DSYTYSSLLTGLCRKGKAVTAVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYF 1497

Query: 311  LIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
              EMM +G  PD V FN I+D   + G+M +A+     M   GV PN +T++ L+ GF
Sbjct: 1498 FEEMMKKGTCPDTVAFNAIIDSCSRRGQMMKANDFFSTMRWWGVCPNLATYNILLHGF 1555



 Score =  107 bits (266), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 69/263 (26%), Positives = 122/263 (46%), Gaps = 7/263 (2%)

Query: 127  LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
            + ++  +N  G   D +T N+L++  C+ G++      L  + R    P+++ +  +I G
Sbjct: 1284 MKVYAVMNCNGHGADHFTCNVLVSSLCRDGKLGEAEKFLCHMSRIGLVPNSITYDCIING 1343

Query: 187  LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
              +    + A + F  +   G  P+  TY +L+ GLC+ G+ + A      +    G   
Sbjct: 1344 YGSIGDPLNAFSFFDDMIKCGQHPSFFTYGSLLKGLCKGGNLVEAKKFLNRLHYIPGAV- 1402

Query: 247  VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
                 ++V Y T++   CK G + +A  LF +M   N+ PD  TY+SL+ G C       
Sbjct: 1403 -----DSVMYNTLLAETCKSGNLHEAVALFDKMVQNNVLPDSYTYSSLLTGLCRKGKAVT 1457

Query: 307  ANCLLIEMMDQGVQ-PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLM 365
            A CL    M +G   P+ V +  ++D L K G    A    E M+ +G  P+T  F+ ++
Sbjct: 1458 AVCLFGTAMGRGTLFPNHVMYTCLVDGLSKAGHPKAAFYFFEEMMKKGTCPDTVAFNAII 1517

Query: 366  DGFCLTGRVNHAKELFVSMESMG 388
            D     G++  A + F +M   G
Sbjct: 1518 DSCSRRGQMMKANDFFSTMRWWG 1540



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/297 (27%), Positives = 136/297 (45%), Gaps = 9/297 (3%)

Query: 93   IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
            ++  M+     P  LT  +L+ G L+K+   D  + L  ++   G   D +T+NILIN +
Sbjct: 1567 LYSTMMREGIFPDKLTFHSLILG-LSKSGIPDLGVKLLGKMIMEGTLADQFTFNILINKY 1625

Query: 153  CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
             + G++   F ++  +      PD   +  +  GL  +S   E+  +  ++   G  P  
Sbjct: 1626 SESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEMLENGVIPKH 1685

Query: 213  ITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
              Y TLING+CR G    A  L +EM A G G        + V  + ++ GL   G  + 
Sbjct: 1686 AQYITLINGMCRVGDIQGAFKLKDEMEALGFGS-------HEVAESAMVRGLLHCGKTED 1738

Query: 272  AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
            A  +   M    + P + T+ +L+H FC      EA  L   M   G++ DVV +NV++ 
Sbjct: 1739 AMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDVVAYNVLIM 1798

Query: 332  ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
             +C NG    A  L E M  R + PN +T++ L+D       +   ++L   ++  G
Sbjct: 1799 GMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTDLQERG 1855



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 72/281 (25%), Positives = 127/281 (45%), Gaps = 6/281 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P L ++N+L    +K +     LSL+  +   G+FPD  T++ LI    K G    G  +
Sbjct: 1543 PNLATYNILLHGFSKKQALLRYLSLYSTMMREGIFPDKLTFHSLILGLSKSGIPDLGVKL 1602

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            LG+++      D   F  LI       ++ +A  L   +   G  P+  TY+ + NGL +
Sbjct: 1603 LGKMIMEGTLADQFTFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNK 1662

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                  +  +  EM       GV+  P    Y T+I+G+C+ G +  A +L  +M+    
Sbjct: 1663 KSAFRESTVVLHEMLEN----GVI--PKHAQYITLINGMCRVGDIQGAFKLKDEMEALGF 1716

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
                V  ++++ G  +     +A  +L  M+   + P + TF  +M   C++ K+ EA +
Sbjct: 1717 GSHEVAESAMVRGLLHCGKTEDAMLVLDHMLRMRLLPTIATFTTLMHRFCRDAKIAEALK 1776

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            L  +M L G+  +   ++ L+ G C  G    A EL+  M 
Sbjct: 1777 LKGVMELCGLKLDVVAYNVLIMGMCANGDSAAAFELYEEMR 1817



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 113/246 (45%), Gaps = 6/246 (2%)

Query: 109  SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
            +FN+L    +++        L   +N+ G+FPD  TYN + N   K        VVL  +
Sbjct: 1617 TFNILINKYSESGKMRKAFDLVNFMNTLGVFPDRDTYNHIFNGLNKKSAFRESTVVLHEM 1676

Query: 169  LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
            L +   P    + +LI G+C    I  A  L  +++A G   + +  S ++ GL   G T
Sbjct: 1677 LENGVIPKHAQYITLINGMCRVGDIQGAFKLKDEMEALGFGSHEVAESAMVRGLLHCGKT 1736

Query: 229  IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
              A+ + + M        +   P   T+TT++   C++  + +A +L   M+   +  DV
Sbjct: 1737 EDAMLVLDHMLR------MRLLPTIATFTTLMHRFCRDAKIAEALKLKGVMELCGLKLDV 1790

Query: 289  VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
            V YN LI G C   D   A  L  EM  + + P++ T+ V++D +     + +  +LL  
Sbjct: 1791 VAYNVLIMGMCANGDSAAAFELYEEMRHRDLCPNITTYAVLVDAISAANNLIQGEKLLTD 1850

Query: 349  MILRGV 354
            +  RG+
Sbjct: 1851 LQERGL 1856



 Score = 84.0 bits (206), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 70/136 (51%)

Query: 250  KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            KP+  T   I+  + K+   +    LF +M DK I P+V T+N LI+G C   +  +A  
Sbjct: 946  KPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKAGN 1005

Query: 310  LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
            LL +M + G  P +VT+N +++  CK G+   A  L++ MI +G+  +  T++  +D  C
Sbjct: 1006 LLKQMEENGFVPTIVTYNTLLNWYCKKGRYKAAIELIDYMICKGIEADVCTYNVFIDNLC 1065

Query: 370  LTGRVNHAKELFVSME 385
               R   A  L   M 
Sbjct: 1066 TNHRSAKAYLLLKKMR 1081



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 318  GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            G +P V T N+I+  + K+ + +    L   M  +G+ PN  TF+ L++G C+ G +  A
Sbjct: 944  GFKPSVYTCNMILASMVKDKRTELVWSLFREMSDKGICPNVGTFNILINGLCVEGNLKKA 1003

Query: 378  KELFVSMESMGCKHTVFSY 396
              L   ME  G   T+ +Y
Sbjct: 1004 GNLLKQMEENGFVPTIVTY 1022


>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
 gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g31850,
            chloroplastic; AltName: Full=Protein PROTON GRADIENT
            REGULATION 3; Flags: Precursor
 gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
 gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
 gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
          Length = 1112

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 98/321 (30%), Positives = 158/321 (49%), Gaps = 43/321 (13%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR------- 157
            P L ++NLL G L +    +    +F ++ STG  PD+ TYN L++ + K G+       
Sbjct: 783  PKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFEL 842

Query: 158  -------------VSHGFVVLGRILRSC----------------FTPDAVAFTSLIKGLC 188
                         ++H  V+ G +                    F+P A  +  LI GL 
Sbjct: 843  YKEMSTHECEANTITHNIVISGLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLS 902

Query: 189  AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
               R+ EA  LF  +  +GC+PN   Y+ LING  + G    A  LF+ M     K GV 
Sbjct: 903  KSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFGKAGEADAACALFKRMV----KEGV- 957

Query: 249  CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             +P+  TY+ ++D LC  G VD+    F ++K+  +NPDVV YN +I+G   ++   EA 
Sbjct: 958  -RPDLKTYSVLVDCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEAL 1016

Query: 309  CLLIEM-MDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             L  EM   +G+ PD+ T+N ++  L   G ++EA ++   +   G+ PN  TF+ L+ G
Sbjct: 1017 VLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRG 1076

Query: 368  FCLTGRVNHAKELFVSMESMG 388
            + L+G+  HA  ++ +M + G
Sbjct: 1077 YSLSGKPEHAYAVYQTMVTGG 1097



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 99/335 (29%), Positives = 155/335 (46%), Gaps = 34/335 (10%)

Query: 93  IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
           +F+ M   R  P  +T   LL    +  +  D+V   +  +   G  PD+ T+ IL++  
Sbjct: 315 VFEKMKTGRHKPDRVTYITLL-DRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDAL 373

Query: 153 CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
           CK G     F  L  +      P+   + +LI GL    R+ +A  LF  +++ G KP  
Sbjct: 374 CKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTA 433

Query: 213 ITYSTLINGLCRTGHTIVALNLFEEMAN-------------------------------G 241
            TY   I+   ++G ++ AL  FE+M                                 G
Sbjct: 434 YTYIVFIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYG 493

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
               G+V  P++VTY  ++    K G +D+A +L  +M +    PDV+  NSLI+    A
Sbjct: 494 LKDIGLV--PDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKA 551

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
           +  +EA  + + M +  ++P VVT+N ++  L KNGK+ EA  L E M+ +G  PNT TF
Sbjct: 552 DRVDEAWKMFMRMKEMKLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITF 611

Query: 362 STLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +TL D  C    V  A ++   M  MGC   VF+Y
Sbjct: 612 NTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFTY 646



 Score =  152 bits (385), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 135/267 (50%), Gaps = 6/267 (2%)

Query: 130 FKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCA 189
            +++   G   + Y+YN LI+   K    +    V  R++   F P    ++SL+ GL  
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGK 235

Query: 190 ESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC 249
              I     L  +++  G KPNV T++  I  L R G    A  + + M +        C
Sbjct: 236 RRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEG------C 289

Query: 250 KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
            P+ VTYT +ID LC    +D AKE+F +MK     PD VTY +L+  F    D +    
Sbjct: 290 GPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRHKPDRVTYITLLDRFSDNRDLDSVKQ 349

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
              EM   G  PDVVTF +++D LCK G   EA   L++M  +G+ PN  T++TL+ G  
Sbjct: 350 FWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLL 409

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
              R++ A ELF +MES+G K T ++Y
Sbjct: 410 RVHRLDDALELFGNMESLGVKPTAYTY 436



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 18/338 (5%)

Query: 61  KDRASLEQFLKERCKSSGQGDITAITP-----------NEAFCIFDYMLNMRPSPPPLTS 109
           +D  S++QF  E  K     D+   T             EAF   D M + +   P L +
Sbjct: 342 RDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFDTLDVMRD-QGILPNLHT 400

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           +N L   L +    D  L LF  + S G+ P  YTY + I+ + K G          ++ 
Sbjct: 401 YNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMK 460

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
                P+ VA  + +  L    R  EA  +F  LK  G  P+ +TY+ ++    + G   
Sbjct: 461 TKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEID 520

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A+ L  EM   NG     C+P+ +   ++I+ L K   VD+A ++F++MK+  + P VV
Sbjct: 521 EAIKLLSEMME-NG-----CEPDVIVVNSLINTLYKADRVDEAWKMFMRMKEMKLKPTVV 574

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+L+ G        EA  L   M+ +G  P+ +TFN + D LCKN ++  A ++L  M
Sbjct: 575 TYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKM 634

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +  G  P+  T++T++ G    G+V  A   F  M+ +
Sbjct: 635 MDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL 672



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 88/300 (29%), Positives = 147/300 (49%), Gaps = 7/300 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++  M+ +    P L +++ L   L K +  D+V+ L K + + GL P++YT+ I 
Sbjct: 206 EAMEVYRRMI-LEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTIC 264

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I    + G+++  + +L R+      PD V +T LI  LC   ++  A  +F K+K    
Sbjct: 265 IRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH 324

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
           KP+ +TY TL++              + EM     K G V  P+ VT+T ++D LCK G 
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEME----KDGHV--PDVVTFTILVDALCKAGN 378

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
             +A +    M+D+ I P++ TYN+LI G    +  ++A  L   M   GV+P   T+ V
Sbjct: 379 FGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIV 438

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            +D   K+G    A    E M  +G+ PN    +  +      GR   AK++F  ++ +G
Sbjct: 439 FIDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYSLAKAGRDREAKQIFYGLKDIG 498



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 81/280 (28%), Positives = 134/280 (47%), Gaps = 6/280 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N L   L K++     + +++R+   G  P L TY+ L+    K   +     +L  +
Sbjct: 190 SYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEM 249

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+   FT  I+ L    +I EA  +  ++   GC P+V+TY+ LI+ LC     
Sbjct: 250 ETLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKL 309

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A  +FE+M  G  K      P+ VTY T++D       +D  K+ + +M+     PDV
Sbjct: 310 DCAKEVFEKMKTGRHK------PDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDV 363

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT+  L+   C A ++ EA   L  M DQG+ P++ T+N ++  L +  ++D+A  L   
Sbjct: 364 VTFTILVDALCKAGNFGEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGN 423

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           M   GV P   T+   +D +  +G    A E F  M++ G
Sbjct: 424 MESLGVKPTAYTYIVFIDYYGKSGDSVSALETFEKMKTKG 463



 Score =  107 bits (268), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 5/247 (2%)

Query: 80   GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
            G + A   ++A  ++  +++ R   P   ++  L   L+K+        LF+ +   G  
Sbjct: 864  GLVKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCR 923

Query: 140  PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
            P+   YNILIN F K G       +  R+++    PD   ++ L+  LC   R+ E    
Sbjct: 924  PNCAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDEGLHY 983

Query: 200  FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
            F +LK  G  P+V+ Y+ +INGL ++     AL LF EM    G       P+  TY ++
Sbjct: 984  FKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRG-----ITPDLYTYNSL 1038

Query: 260  IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
            I  L   G V++A +++ +++   + P+V T+N+LI G+  +     A  +   M+  G 
Sbjct: 1039 ILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGF 1098

Query: 320  QPDVVTF 326
             P+  T+
Sbjct: 1099 SPNTGTY 1105



 Score = 65.1 bits (157), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 71/149 (47%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           + K +T TY TI   L  +G + +A     +M++     +  +YN LIH    +    EA
Sbjct: 148 IIKRDTNTYLTIFKSLSVKGGLKQAPYALRKMREFGFVLNAYSYNGLIHLLLKSRFCTEA 207

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +   M+ +G +P + T++ +M  L K   +D    LL+ M   G+ PN  TF+  +  
Sbjct: 208 MEVYRRMILEGFRPSLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRV 267

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
               G++N A E+   M+  GC   V +Y
Sbjct: 268 LGRAGKINEAYEILKRMDDEGCGPDVVTY 296



 Score = 62.4 bits (150), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 53/117 (45%), Gaps = 1/117 (0%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLN-STGLFPDLYTYNILINCFCKMGRVSHGFV 163
            P +  +NL+   L K+   +  L LF  +  S G+ PDLYTYN LI      G V     
Sbjct: 994  PDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGK 1053

Query: 164  VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
            +   I R+   P+   F +LI+G     +   A A++  +   G  PN  TY  L N
Sbjct: 1054 IYNEIQRAGLEPNVFTFNALIRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQLPN 1110



 Score = 45.1 bits (105), Expect = 0.065,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 43/95 (45%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            EA  +F+ M   R   P L ++N L   L      +    ++  +   GL P+++T+N L
Sbjct: 1014 EALVLFNEMKTSRGITPDLYTYNSLILNLGIAGMVEEAGKIYNEIQRAGLEPNVFTFNAL 1073

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
            I  +   G+  H + V   ++   F+P+   +  L
Sbjct: 1074 IRGYSLSGKPEHAYAVYQTMVTGGFSPNTGTYEQL 1108


>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
          Length = 709

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 83/257 (32%), Positives = 135/257 (52%), Gaps = 5/257 (1%)

Query: 125 TVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLI 184
           + + + + +   G  PD+   N+ +N     GRV        R+ R    PD V +  LI
Sbjct: 181 SAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLI 240

Query: 185 KGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK 244
           KGLC   RI+EA  +   +   GC P+ I+Y T+++ LC+        NL E M N  G 
Sbjct: 241 KGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKRVAEVWNLLERMRNDAGI 300

Query: 245 FGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDW 304
           F     P+ +TY  +I GL K G  D+A     + + K    D V Y++++H FC     
Sbjct: 301 F-----PDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAIVHSFCLNGRM 355

Query: 305 NEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTL 364
           +EA  ++ EM+ +G +PDVVT++ ++D  C+ G++D+A ++++ M   G  PNT T + L
Sbjct: 356 SEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTAL 415

Query: 365 MDGFCLTGRVNHAKELF 381
           ++G C  G+ + A EL 
Sbjct: 416 LNGLCKVGKSSEAWELL 432



 Score =  146 bits (369), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/266 (30%), Positives = 138/266 (51%), Gaps = 7/266 (2%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D  L   +R+   G+ PD+ TYN LI   C   R+     ++G +L++   PD +++ ++
Sbjct: 215 DKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTV 274

Query: 184 IKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGN 242
           +  LC E R+ E   L  +++   G  P+ ITY+ LI+GL + GH   AL    E  +  
Sbjct: 275 MSFLCKEKRVAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRE--SEG 332

Query: 243 GKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYAN 302
            +F V    + V Y+ I+   C  G + +AKE+  +M  K   PDVVTY++++ GFC   
Sbjct: 333 KRFRV----DQVGYSAIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIG 388

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
           + ++A  ++  M   G +P+ VT   +++ LCK GK  EA  LL         P+  T+S
Sbjct: 389 ELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYS 448

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMG 388
            +M GF   G++  + ++ + M   G
Sbjct: 449 VIMHGFRREGKLVESCDVVMQMLQKG 474



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 143/303 (47%), Gaps = 10/303 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E F   D     R +P     F+ +   L++T+ +D    + + +   G+      +  L
Sbjct: 113 EFFRWADRQWKYRHAP---EVFDEMLALLSRTRLHDPARRVVRLMIRRGIRRGTRQFAHL 169

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +  + + G++     VL  + +    PD       +  L    R+ +A     +++  G 
Sbjct: 170 MLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNVAVNVLVVAGRVDKALEFAERMRRVGV 229

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+V+TY+ LI GLC     + AL +   M   NG     C P+ ++Y T++  LCKE  
Sbjct: 230 DPDVVTYNCLIKGLCGARRIVEALEMIGSMLQ-NG-----CPPDKISYFTVMSFLCKEKR 283

Query: 269 VDKAKELFLQMK-DKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
           V +   L  +M+ D  I PD +TYN LIHG       +EA   L E   +  + D V ++
Sbjct: 284 VAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYS 343

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            I+   C NG+M EA  ++  MI +G  P+  T+S ++DGFC  G ++ A+++   M   
Sbjct: 344 AIVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKN 403

Query: 388 GCK 390
           GCK
Sbjct: 404 GCK 406



 Score =  130 bits (326), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/316 (28%), Positives = 146/316 (46%), Gaps = 29/316 (9%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           E + + + M N     P   ++N+L   LAK  H D  L+  +         D   Y+ +
Sbjct: 286 EVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYSAI 345

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           ++ FC  GR+S    ++G ++     PD V +++++ G C    + +A  +   +   GC
Sbjct: 346 VHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGC 405

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLF----EEMANGNG-KFGVVCK------------- 250
           KPN +T++ L+NGLC+ G +  A  L     EE    +G  + V+               
Sbjct: 406 KPNTVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGITYSVIMHGFRREGKLVESCD 465

Query: 251 -----------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFC 299
                      P  V    +I  LCKE    +AK+   Q + K    +VV + ++IHGF 
Sbjct: 466 VVMQMLQKGFFPTAVEINLLIHALCKEQKPARAKDFMEQCQSKGCFINVVNFTTVIHGFS 525

Query: 300 YANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTS 359
              D   A  LL +M      PDVVT+ V++D L + GKM EA+ L+E M+ RG+ P   
Sbjct: 526 RQGDLESALSLLDDMYLTNRHPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPTPV 585

Query: 360 TFSTLMDGFCLTGRVN 375
           T+ T++  +C  G V 
Sbjct: 586 TYRTVIHRYCEKGAVE 601



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 132/277 (47%), Gaps = 8/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +++ +     +    D    + K +   G  P+  T+  L+N  CK+G+ S  + +
Sbjct: 372 PDVVTYSAVVDGFCRIGELDQARKMMKHMYKNGCKPNTVTHTALLNGLCKVGKSSEAWEL 431

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L +     +TP  + ++ ++ G   E +++E+  +  ++   G  P  +  + LI+ LC+
Sbjct: 432 LNKSEEEWWTPSGITYSVIMHGFRREGKLVESCDVVMQMLQKGFFPTAVEINLLIHALCK 491

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A +  E+  +        C  N V +TT+I G  ++G ++ A  L   M   N 
Sbjct: 492 EQKPARAKDFMEQCQSKG------CFINVVNFTTVIHGFSRQGDLESALSLLDDMYLTNR 545

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PDVVTY  ++          EA  L+ +M+++G+ P  VT+  ++   C+ G +++   
Sbjct: 546 HPDVVTYTVVVDALGRKGKMKEATALVEKMLNRGLLPTPVTYRTVIHRYCEKGAVEDLLN 605

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LL+ M+ +     +S ++ +++  C  G+++ A  L 
Sbjct: 606 LLDKMLTK--QGFSSAYNQVIEKLCAFGKLSEAYNLL 640



 Score = 45.4 bits (106), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 36/127 (28%), Positives = 56/127 (44%)

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D A+ +   M  + I      +  L+  +  A     A  +L  M   G  PD+   NV 
Sbjct: 145 DPARRVVRLMIRRGIRRGTRQFAHLMLSYSRAGKLRSAMRVLQLMQKDGCAPDICICNVA 204

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           ++ L   G++D+A    E M   GV+P+  T++ L+ G C   R+  A E+  SM   GC
Sbjct: 205 VNVLVVAGRVDKALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGC 264

Query: 390 KHTVFSY 396
                SY
Sbjct: 265 PPDKISY 271


>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
          Length = 372

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 58  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 117

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPNV  Y+TLINGL    
Sbjct: 118 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 177

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+GLCK     +A  L  ++ DK ++P
Sbjct: 178 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDP 231

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +    A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 232 GVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 291

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 292 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 341



 Score =  122 bits (307), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 143/302 (47%), Gaps = 30/302 (9%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 6   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 64

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE------- 236
           ++GL    ++ E  +++  +K  G   + ITY  L++G C+ G+   +L++ E       
Sbjct: 65  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGG 124

Query: 237 --------EMANG--------------NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
                    M NG              NG     CKPN   Y T+I+GL      + A  
Sbjct: 125 VLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIR 184

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F +M   + +P ++TYN+LI+G C    + EA  L+ E++D+G+ P V+T++++M  LC
Sbjct: 185 VFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLC 244

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            + +++ A  L   +  +G  P+    + L+ G C  G++  A  L+  M    C   + 
Sbjct: 245 LDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLV 304

Query: 395 SY 396
           S+
Sbjct: 305 SH 306



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 105/203 (51%), Gaps = 6/203 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L     ++  + +F+ + +    P + TYN LIN  CK       + +
Sbjct: 161 PNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNL 220

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L     P  + ++ L+KGLC + R+  A  L+ ++ + G KP+V  ++ LI+GLC 
Sbjct: 221 VKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCS 280

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL+L+ +M          C PN V++ T+++G  K+G +  A  ++ ++    +
Sbjct: 281 VGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 334

Query: 285 NPDVVTYNSLIHGFCYANDWNEA 307
            PD+++YN  + G C  N  ++A
Sbjct: 335 EPDIISYNITLEGLCSCNRISDA 357



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 68/133 (51%), Gaps = 3/133 (2%)

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPDV 323
           + G +D A+ ++ ++ +  ++PD V YN++++G+       +  C  L EMM       V
Sbjct: 1   ESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRSV 58

Query: 324 VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            +FN++M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +   
Sbjct: 59  SSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEM 118

Query: 384 MESMGCKHTVFSY 396
            E  G     F+Y
Sbjct: 119 AEQKGGVLDAFAY 131


>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
 gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
          Length = 1115

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 103/343 (30%), Positives = 165/343 (48%), Gaps = 30/343 (8%)

Query: 83  TAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDL 142
           TA   ++A C+F  M +    P  +T   LL    +   H D V  ++  + + G  PD+
Sbjct: 311 TARKLDDAMCLFTKMKSSSHKPDKVTYVTLL-DKFSDCGHLDKVEKIWTEMEADGYAPDV 369

Query: 143 YTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            T+ IL+N  CK GR++  F +L  + +    P+   + +LI GL   +R+ +A  LF+ 
Sbjct: 370 VTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSN 429

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCK----------- 250
           +++ G +P   TY  LI+   ++GH   AL  FE+M A G     V C            
Sbjct: 430 MESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGR 489

Query: 251 -----------------PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
                            P++VTY  ++    K G VD+A +L  +M      PDV+  NS
Sbjct: 490 LGEAKAMFNELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINS 549

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           LI     A    EA  +   M +  + P VVT+N+++  L K G++ +A +L E M   G
Sbjct: 550 LIDTLYKAGRVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHG 609

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +PNT TF+TL+D  C    V+ A ++F  M +M C+  V ++
Sbjct: 610 CSPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTF 652



 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 105/368 (28%), Positives = 171/368 (46%), Gaps = 49/368 (13%)

Query: 57   RLTVKDRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGC 116
            R   KD + L   +K  CK       T++  N  F  F   L ++P+   L  +NLL   
Sbjct: 748  RAICKDDSVLIPIIKVLCKHKK----TSVARN-VFVKFTKELGVKPT---LKVYNLLIDG 799

Query: 117  LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL-RSC--- 172
              +  + +   +LF+ + S G  PD +TYN LI+   K G+++  F +   +L R C   
Sbjct: 800  FLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPN 859

Query: 173  -------------------------------FTPDAVAFTSLIKGLCAESRIMEAAALFT 201
                                           F+P    F  LI GL    R+ +A  +F 
Sbjct: 860  TITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFD 919

Query: 202  KLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIID 261
             +  +GC+PN   Y+ L+NG  + GH   A   F+ M     K G+  +P+  +YT ++D
Sbjct: 920  GMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMV----KEGI--RPDLKSYTILVD 973

Query: 262  GLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP 321
             LC  G VD A   F ++K   ++PD+V YN +I+G   +    EA  L  EM ++G+ P
Sbjct: 974  ILCIAGRVDDALHYFEKLKQAGLDPDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVP 1033

Query: 322  DVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
            D+ T+N ++  L   G ++EA ++ E +   G+ PN  T++ L+ G+ L+G    A  ++
Sbjct: 1034 DLYTYNSLILNLGIVGMIEEAGKIYEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIY 1093

Query: 382  VSMESMGC 389
              M   GC
Sbjct: 1094 KKMMVGGC 1101



 Score =  154 bits (389), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 93/309 (30%), Positives = 158/309 (51%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++  M++     P L +F+ L     K ++  TV+ L + + S GL P++YTY I 
Sbjct: 212 EALEVYRRMVS-EGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYTIC 270

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I    + G++   + ++ R+      PD V +T LI  LC   ++ +A  LFTK+K+   
Sbjct: 271 IRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSH 330

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           KP+ +TY TL++     GH      ++ EM A+G         P+ VT+T +++ LCK G
Sbjct: 331 KPDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYA-------PDVVTFTILVNALCKAG 383

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            +++A +L   M+ + + P++ TYN+LI G   AN  ++A  L   M   GV+P   T+ 
Sbjct: 384 RINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYI 443

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++D   K+G   +A    E M  RG+ PN    +  +      GR+  AK +F  ++S 
Sbjct: 444 LLIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSS 503

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 504 GLAPDSVTY 512



 Score =  153 bits (387), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 92/300 (30%), Positives = 150/300 (50%), Gaps = 7/300 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           NEAF + D M   +   P L ++N L   L +    D  L LF  + S G+ P  YTY +
Sbjct: 386 NEAFDLLDTM-RKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGVEPTAYTYIL 444

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI+   K G          ++      P+ VA  + +  L    R+ EA A+F +LK+ G
Sbjct: 445 LIDYHGKSGHPGKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAKAMFNELKSSG 504

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+ ++    + G    A+ L  EM+       V C+P+ +   ++ID L K G
Sbjct: 505 LAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSK------VQCEPDVIVINSLIDTLYKAG 558

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            V++A ++F +M++ N+ P VVTYN L+ G        +A  L   M   G  P+ +TFN
Sbjct: 559 RVEEAWQMFCRMEEMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGCSPNTITFN 618

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++D LCKN ++D A ++   M      P+  TF+T++ GF    ++ +A  LF  M+ +
Sbjct: 619 TLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIWLFHQMKKL 678



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/269 (31%), Positives = 137/269 (50%), Gaps = 6/269 (2%)

Query: 128 SLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGL 187
           S  +++   G   + Y+YN LI+   + G       V  R++     P    F++L+   
Sbjct: 180 SALEKMREAGFVLNAYSYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVAS 239

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGV 247
                I     L  ++++ G +PN+ TY+  I  L R G    A  + + M +       
Sbjct: 240 GKRRNIKTVMGLLEEMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDG----- 294

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
            C P+ VTYT +ID LC    +D A  LF +MK  +  PD VTY +L+  F      ++ 
Sbjct: 295 -CGPDVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYVTLLDKFSDCGHLDKV 353

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +  EM   G  PDVVTF ++++ LCK G+++EA  LL+ M  +GV PN  T++TL+ G
Sbjct: 354 EKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISG 413

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                R++ A +LF +MES+G + T ++Y
Sbjct: 414 LLRANRLDDALDLFSNMESLGVEPTAYTY 442



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 140/280 (50%), Gaps = 6/280 (2%)

Query: 109 SFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRI 168
           S+N L   L ++      L +++R+ S GL P L T++ L+    K   +     +L  +
Sbjct: 196 SYNGLIHFLLQSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEM 255

Query: 169 LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHT 228
                 P+   +T  I+ L  + +I EA  +  ++   GC P+V+TY+ LI+ LC     
Sbjct: 256 ESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTARKL 315

Query: 229 IVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDV 288
             A+ LF +M + + K      P+ VTY T++D     G +DK ++++ +M+     PDV
Sbjct: 316 DDAMCLFTKMKSSSHK------PDKVTYVTLLDKFSDCGHLDKVEKIWTEMEADGYAPDV 369

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
           VT+  L++  C A   NEA  LL  M  QGV P++ T+N ++  L +  ++D+A  L   
Sbjct: 370 VTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSN 429

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           M   GV P   T+  L+D    +G    A E F  M++ G
Sbjct: 430 MESLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARG 469



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 94/373 (25%), Positives = 151/373 (40%), Gaps = 68/373 (18%)

Query: 90   AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            A  +F  M  M   P  LT FN +     K       + LF ++    L PD  T   L+
Sbjct: 633  ALKMFYKMTTMNCRPDVLT-FNTIIHGFIKQNQIKNAIWLFHQMKKL-LRPDHVTLCTLL 690

Query: 150  NCFCKMGRVSHGFV--------------------VLGRILRSCFTPDAVAFTS------- 182
                K G++   F                     V+G IL    T  A+ F         
Sbjct: 691  PGVIKSGQIEDAFRITEDFFYQVGSNIDRSFWEDVMGGILTEAGTEKAILFGERLVCRAI 750

Query: 183  ---------LIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                     +IK LC   +   A  +F K  K  G KP +  Y+ LI+G     +  VA 
Sbjct: 751  CKDDSVLIPIIKVLCKHKKTSVARNVFVKFTKELGVKPTLKVYNLLIDGFLEVHNVEVAW 810

Query: 233  NLFEEMA---------------NGNGKFGVV--------------CKPNTVTYTTIIDGL 263
            NLFEEM                + +GK G +              CKPNT+TY  +I  L
Sbjct: 811  NLFEEMKSAGCAPDTFTYNSLIDAHGKSGKINELFDLYDEMLTRGCKPNTITYNMVISNL 870

Query: 264  CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             K   +DKA +L+  +   + +P   T+  LI G   +   ++A+ +   M+  G +P+ 
Sbjct: 871  VKSNRLDKAMDLYYNLVSGDFSPTPCTFGPLIDGLLKSGRLDDAHEMFDGMVHYGCRPNS 930

Query: 324  VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
              +N++++   K G +D A    + M+  G+ P+  +++ L+D  C+ GRV+ A   F  
Sbjct: 931  AIYNILVNGYGKLGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEK 990

Query: 384  MESMGCKHTVFSY 396
            ++  G    + +Y
Sbjct: 991  LKQAGLDPDLVAY 1003



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 56/116 (48%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P L ++NL+   L +++  +  LSLF  + + G+ PDLYTYN LI     +G +     +
Sbjct: 998  PDLVAYNLMINGLGRSQRTEEALSLFHEMQNRGIVPDLYTYNSLILNLGIVGMIEEAGKI 1057

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               +      P+   + +LI+G         A  ++ K+   GC PN  T++ L N
Sbjct: 1058 YEELQFIGLKPNVFTYNALIRGYTLSGNSELAYGIYKKMMVGGCDPNTGTFAQLPN 1113



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 68/154 (44%), Gaps = 10/154 (6%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH-----GFCYAN 302
           + + N  TY  I   L   G + +A     +M++     +  +YN LIH     GFC   
Sbjct: 154 IIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLLQSGFC--- 210

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  +   M+ +G++P + TF+ +M    K   +     LLE M   G+ PN  T++
Sbjct: 211 --KEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIYTYT 268

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +      G+++ A  +   M+  GC   V +Y
Sbjct: 269 ICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTY 302



 Score = 42.4 bits (98), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 30/122 (24%), Positives = 54/122 (44%)

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F  M+ + I  +V TY  +           +A   L +M + G   +  ++N ++  L 
Sbjct: 146 VFDLMQRQIIRRNVDTYLIIFKSLFIRGGLRQAPSALEKMREAGFVLNAYSYNGLIHFLL 205

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           ++G   EA  +   M+  G+ P+  TFS LM        +     L   MESMG +  ++
Sbjct: 206 QSGFCKEALEVYRRMVSEGLKPSLKTFSALMVASGKRRNIKTVMGLLEEMESMGLRPNIY 265

Query: 395 SY 396
           +Y
Sbjct: 266 TY 267


>gi|242044666|ref|XP_002460204.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
 gi|241923581|gb|EER96725.1| hypothetical protein SORBIDRAFT_02g024500 [Sorghum bicolor]
          Length = 637

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 94/307 (30%), Positives = 147/307 (47%), Gaps = 37/307 (12%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           GC+   +       LF  +   G+ P+ YTYN+L++  C+   V+  FV+   +L S   
Sbjct: 227 GCIGDAER------LFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLI 280

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
           P+AV FT+LI G C   R  EA  +F  +  FG  P V  Y++L++G  R+G    AL+L
Sbjct: 281 PNAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSL 340

Query: 235 FEEMAN------------------GNGKFGVVCK-----------PNTVTYTTIIDGLCK 265
           ++EM                      G+  V  +            N   Y  +ID  C+
Sbjct: 341 YQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCR 400

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
            G +++A     +M +  + P+VV+Y+SLI G         A  +  EM+ +G++P+VVT
Sbjct: 401 NGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVT 460

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           +  ++    KNG +D A R  + MI  G++PN  T S L+DG C   RV  A      ME
Sbjct: 461 YTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENRVQDAVRFV--ME 518

Query: 386 SMGCKHT 392
             G K++
Sbjct: 519 HSGIKYS 525



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 97/309 (31%), Positives = 153/309 (49%), Gaps = 10/309 (3%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  +F  +  +    P L + N +   L K +       LF  +   G+ P + TYN 
Sbjct: 128 DEALYVFRRLWTL----PALPACNAVLDGLVKARRSRCAWELFDEMLRRGMVPSVVTYNT 183

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN     G V+    +  +++     P+ + +TS+I  LC E  I +A  LF  +K  G
Sbjct: 184 LINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMICVLCEEGCIGDAERLFDAMKEAG 243

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
            +PN  TY+ L++G C+      A  L++E+ N     G++  PN V +TT+IDG CK  
Sbjct: 244 MRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNS----GLI--PNAVVFTTLIDGFCKAK 297

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
              +AK++F  M    + P V  YNSL+ G   + D  EA  L  EM   G+ PD  T +
Sbjct: 298 RFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCS 357

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           +++  LC  G++  A+R LE +   GVN N + ++ L+D +C  G +  A      M  +
Sbjct: 358 IVVRGLCDGGQIQVAARFLEGVREDGVNLNAAAYNALIDEYCRNGNLEEALATCTRMTEV 417

Query: 388 GCKHTVFSY 396
           G +  V SY
Sbjct: 418 GVEPNVVSY 426



 Score =  130 bits (327), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/337 (27%), Positives = 150/337 (44%), Gaps = 32/337 (9%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           QGD      N AF ++  +LN    P  +  F  L     K K +     +F+ +   G+
Sbjct: 260 QGDDV----NSAFVLYQELLNSGLIPNAVV-FTTLIDGFCKAKRFSEAKDMFRDMPRFGV 314

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            P +  YN L++   + G       +   + R    PD    + +++GLC   +I  AA 
Sbjct: 315 APTVPVYNSLMDGAFRSGDAQEALSLYQEMTRLGLCPDEFTCSIVVRGLCDGGQIQVAAR 374

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTT 258
               ++  G   N   Y+ LI+  CR G      NL E +A       V  +PN V+Y++
Sbjct: 375 FLEGVREDGVNLNAAAYNALIDEYCRNG------NLEEALATCTRMTEVGVEPNVVSYSS 428

Query: 259 IIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQG 318
           +IDG  K G +  A  ++ +M  K I P+VVTY +LIHG       + A     EM++ G
Sbjct: 429 LIDGHSKLGKMQIAMAIYTEMVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENG 488

Query: 319 VQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN-------------------PNTS 359
           + P+ +T +V++D LC+  ++ +A R +  M   G+                    PN++
Sbjct: 489 ISPNAITVSVLVDGLCRENRVQDAVRFV--MEHSGIKYSDIHSFFSNFTTEEEPLIPNSA 546

Query: 360 TFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            + TL+ G  L G+   A +LF  M   G     F+Y
Sbjct: 547 IYMTLIYGLYLDGQHYEAGKLFSYMRKSGMISDSFTY 583



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 9/243 (3%)

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            +L+    +MG +     V  R+      P   A  +++ GL    R   A  LF ++  
Sbjct: 115 GVLVIALSQMGLLDEALYVFRRLWT---LPALPACNAVLDGLVKARRSRCAWELFDEMLR 171

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCK 265
            G  P+V+TY+TLIN     G    A  ++++M            PN +TYT++I  LC+
Sbjct: 172 RGMVPSVVTYNTLINACRYQGAVAKAQEMWDQMVARQ------IDPNVITYTSMICVLCE 225

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVT 325
           EG +  A+ LF  MK+  + P+  TYN L+ G C  +D N A  L  E+++ G+ P+ V 
Sbjct: 226 EGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIPNAVV 285

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           F  ++D  CK  +  EA  +   M   GV P    +++LMDG   +G    A  L+  M 
Sbjct: 286 FTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVYNSLMDGAFRSGDAQEALSLYQEMT 345

Query: 386 SMG 388
            +G
Sbjct: 346 RLG 348



 Score =  110 bits (274), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 115/220 (52%), Gaps = 9/220 (4%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           A A   L+  L     + EA  +F +L      P +   + +++GL +   +  A  LF+
Sbjct: 111 APALGVLVIALSQMGLLDEALYVFRRLWTL---PALPACNAVLDGLVKARRSRCAWELFD 167

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
           EM     + G+V  P+ VTY T+I+    +G V KA+E++ QM  + I+P+V+TY S+I 
Sbjct: 168 EML----RRGMV--PSVVTYNTLINACRYQGAVAKAQEMWDQMVARQIDPNVITYTSMIC 221

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C      +A  L   M + G++P+  T+NV+M   C+   ++ A  L + ++  G+ P
Sbjct: 222 VLCEEGCIGDAERLFDAMKEAGMRPNQYTYNVLMSGHCQGDDVNSAFVLYQELLNSGLIP 281

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           N   F+TL+DGFC   R + AK++F  M   G   TV  Y
Sbjct: 282 NAVVFTTLIDGFCKAKRFSEAKDMFRDMPRFGVAPTVPVY 321



 Score = 82.4 bits (202), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/239 (25%), Positives = 104/239 (43%), Gaps = 17/239 (7%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            ++N L     +  + +  L+   R+   G+ P++ +Y+ LI+   K+G++     +   
Sbjct: 389 AAYNALIDEYCRNGNLEEALATCTRMTEVGVEPNVVSYSSLIDGHSKLGKMQIAMAIYTE 448

Query: 168 ILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGH 227
           ++     P+ V +T+LI G      I  A     ++   G  PN IT S L++GLCR   
Sbjct: 449 MVAKGIEPNVVTYTALIHGHAKNGGIDAAFRFHKEMIENGISPNAITVSVLVDGLCRENR 508

Query: 228 TIVALNLFEEMANGNGKFGVVCK-------------PNTVTYTTIIDGLCKEGFVDKAKE 274
              A+     M +   K+  +               PN+  Y T+I GL  +G   +A +
Sbjct: 509 VQDAVRFV--MEHSGIKYSDIHSFFSNFTTEEEPLIPNSAIYMTLIYGLYLDGQHYEAGK 566

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDEL 333
           LF  M+   +  D  TY  LI G C       A  L  +MM  GV+P  + + +I  E+
Sbjct: 567 LFSYMRKSGMISDSFTYTLLIRGQCMLGYVLNAMMLYADMMKIGVKP--MRYKIICPEI 623


>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
 gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
          Length = 319

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 146/259 (56%), Gaps = 11/259 (4%)

Query: 138 LFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAA 197
           + PD  T+NIL++  CK G++S    ++  ++     P+ V ++SL+ G   ++R+ EA 
Sbjct: 6   IMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR 65

Query: 198 ALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYT 257
            +F  +   GC P+V++Y+ LING C+      A  +F+EM+      G++  PNT TY 
Sbjct: 66  KVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFR----GLI--PNTATYN 119

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++ G  K+       +LF  M  +  +PD+VTY+  +HG       ++A  L  EM + 
Sbjct: 120 TLLGGFWKQKI-----QLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNN 174

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
            + PD+V +N+++D +CK+GK+++A  L   + ++G+ P+  ++++++ G C  G ++ A
Sbjct: 175 YLNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEA 234

Query: 378 KELFVSMESMGCKHTVFSY 396
            + F  ME  GC     SY
Sbjct: 235 YKAFRQMERDGCPPDCCSY 253



 Score =  135 bits (340), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 135/279 (48%), Gaps = 12/279 (4%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +EA  I   M+     P  +T  +L+ G L + + ++    +F  + + G  PD+ +YNI
Sbjct: 27  SEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEAR-KVFNAMITRGCIPDVLSYNI 85

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LIN  CK  R+     +   +      P+   + +L+ G   +        LF  + A G
Sbjct: 86  LINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGGFWKQK-----IQLFKDMHAQG 140

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           C P+++TYS  ++GL + G+   AL LF EM N          P+ V Y  +ID +CK G
Sbjct: 141 CSPDLVTYSIFLHGLSKQGYLDQALELFREMQNN------YLNPDLVIYNILIDAMCKSG 194

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            ++ A+ELFL++  K + PDV ++ S+I G C     +EA     +M   G  PD  ++N
Sbjct: 195 KLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYN 254

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           VI+    +N     A +L + M  RG + +  T +   D
Sbjct: 255 VIVRGFLQNNGASRAEQLFQEMFDRGFSADALTRTLAAD 293



 Score =  103 bits (256), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 90/149 (60%), Gaps = 5/149 (3%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEA 307
           +  P+ VT+  ++D LCK+G + +A+ +   M +K + P+ VTY+SL++G+   N   EA
Sbjct: 5   IIMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNRVFEA 64

Query: 308 NCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDG 367
             +   M+ +G  PDV+++N++++  CK  ++DEA ++ + M  RG+ PNT+T++TL+ G
Sbjct: 65  RKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNTLLGG 124

Query: 368 FCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           F          +LF  M + GC   + +Y
Sbjct: 125 FW-----KQKIQLFKDMHAQGCSPDLVTY 148



 Score =  101 bits (251), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 59/223 (26%), Positives = 107/223 (47%), Gaps = 34/223 (15%)

Query: 203 LKAFGCKPNVITYSTLINGLCRTGHTIVALNL---------------FEEMANG------ 241
           + +F   P+ +T++ L++ LC+ G    A  +               +  + NG      
Sbjct: 1   MTSFIIMPDAVTFNILVDTLCKKGKISEAQGIVKTMIEKGVEPNTVTYSSLMNGYLLQNR 60

Query: 242 --------NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNS 293
                   N      C P+ ++Y  +I+G CK   +D+AK++F +M  + + P+  TYN+
Sbjct: 61  VFEARKVFNAMITRGCIPDVLSYNILINGCCKAQRIDEAKQIFDEMSFRGLIPNTATYNT 120

Query: 294 LIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRG 353
           L+ GF     W +   L  +M  QG  PD+VT+++ +  L K G +D+A  L   M    
Sbjct: 121 LLGGF-----WKQKIQLFKDMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNY 175

Query: 354 VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +NP+   ++ L+D  C +G++  A+ELF+ +   G    V S+
Sbjct: 176 LNPDLVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSW 218


>gi|297817834|ref|XP_002876800.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297322638|gb|EFH53059.1| hypothetical protein ARALYDRAFT_484139 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1010

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/277 (33%), Positives = 138/277 (49%), Gaps = 6/277 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   S N L    AK    D V   FK +   G  P ++TYNI+I+C CK G V     +
Sbjct: 58  PKTRSCNGLLHKFAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGL 117

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +      PD V + S+I G     R+ +    F ++K   C+P+VITY+ LIN  C+
Sbjct: 118 FEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCCEPDVITYNALINCFCK 177

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G     L  F EM   NG      KPN V+Y+T++D  CKEG + +A + ++ M+   +
Sbjct: 178 FGKLPKGLEFFREMKR-NG-----LKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGL 231

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+  TY SLI  +C   + ++A  L  EM+  GV+ +VVT+  ++D LC      E   
Sbjct: 232 VPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLH 291

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELF 381
           LL+ M+   +     TF  L+DG C    V+ A + F
Sbjct: 292 LLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYF 328



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 155/330 (46%), Gaps = 42/330 (12%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           + P + ++N++  C+ K    +    LF+ +   GL PD  TYN +I+ F K+GR+    
Sbjct: 91  AKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPDTVTYNSMIDGFGKVGRLDDTV 150

Query: 163 VVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGL 222
                +   C  PD + + +LI   C   ++ +    F ++K  G KPNV++YSTL++  
Sbjct: 151 CFFEEMKDMCCEPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAF 210

Query: 223 CRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDK 282
           C+ G    A+  + +M     + G+V  PN  TYT++ID  CK G +  A  L  +M   
Sbjct: 211 CKEGMMQQAIKFYVDMR----RVGLV--PNEYTYTSLIDAYCKIGNLSDAFRLANEMLQV 264

Query: 283 NINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN------ 336
            +  +VVTY +LI G C   +  E   LL EM++  ++  VVTF V++D LCKN      
Sbjct: 265 GVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKA 324

Query: 337 ------------------------------GKMDEASRLLELMILRGVNPNTSTFSTLMD 366
                                          +++ A+ L E M  +G+ P+ + +++LMD
Sbjct: 325 IDYFGRISNDFGLQANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMD 384

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G    G V  A  L   M   G K  + +Y
Sbjct: 385 GNFKQGNVLEALALRDKMVETGMKLDLLAY 414



 Score =  136 bits (342), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 144/305 (47%), Gaps = 7/305 (2%)

Query: 93  IFDYMLNMRPS-PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINC 151
           +FD + + R    P    F+ LF  L      +  +  F ++    +FP   + N L++ 
Sbjct: 10  VFDVLWSTRNVCVPGFGVFDALFSVLIDLGMVEEAIQCFSKMKRFRVFPKTRSCNGLLHK 69

Query: 152 FCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPN 211
           F K+G+          ++ +   P    +  +I  +C E  +  A  LF ++K  G  P+
Sbjct: 70  FAKLGKTDGVKRFFKDMIGAGAKPTVFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLIPD 129

Query: 212 VITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDK 271
            +TY+++I+G  + G     +  FEEM +      + C+P+ +TY  +I+  CK G + K
Sbjct: 130 TVTYNSMIDGFGKVGRLDDTVCFFEEMKD------MCCEPDVITYNALINCFCKFGKLPK 183

Query: 272 AKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMD 331
             E F +MK   + P+VV+Y++L+  FC      +A    ++M   G+ P+  T+  ++D
Sbjct: 184 GLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLID 243

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
             CK G + +A RL   M+  GV  N  T++ L+DG C          L   M  +  K 
Sbjct: 244 AYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKV 303

Query: 392 TVFSY 396
           TV ++
Sbjct: 304 TVVTF 308



 Score =  133 bits (335), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 146/340 (42%), Gaps = 36/340 (10%)

Query: 79  QGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGL 138
           +GD+ A     A  +F+ M   R   P   ++N +     K    D  +  F+ +     
Sbjct: 108 EGDVEA-----ARGLFEEM-KFRGLIPDTVTYNSMIDGFGKVGRLDDTVCFFEEMKDMCC 161

Query: 139 FPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAA 198
            PD+ TYN LINCFCK G++  G      + R+   P+ V++++L+   C E  + +A  
Sbjct: 162 EPDVITYNALINCFCKFGKLPKGLEFFREMKRNGLKPNVVSYSTLVDAFCKEGMMQQAIK 221

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVC--------- 249
            +  ++  G  PN  TY++LI+  C+ G+   A  L  EM     ++ VV          
Sbjct: 222 FYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRLANEMLQVGVEWNVVTYTALIDGLC 281

Query: 250 --------------------KPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDV 288
                               K   VT+  +IDGLCK   V KA + F ++  D  +  + 
Sbjct: 282 GWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCKNKLVSKAIDYFGRISNDFGLQANA 341

Query: 289 VTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLEL 348
             Y ++I G C  N    A  L  +M  +G+ PD   +  +MD   K G + EA  L + 
Sbjct: 342 AIYTAMIDGLCKGNQVEAATTLFEQMAQKGLVPDRTAYTSLMDGNFKQGNVLEALALRDK 401

Query: 349 MILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           M+  G+  +   +++L+ G     ++  A+     M   G
Sbjct: 402 MVETGMKLDLLAYTSLVWGLSHCNQLQKARSFLEEMIGEG 441



 Score =  131 bits (329), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/276 (29%), Positives = 135/276 (48%), Gaps = 5/276 (1%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + S++ L     K       +  +  +   GL P+ YTY  LI+ +CK+G +S  F +
Sbjct: 198 PNVVSYSTLVDAFCKEGMMQQAIKFYVDMRRVGLVPNEYTYTSLIDAYCKIGNLSDAFRL 257

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L+     + V +T+LI GLC      E   L  ++     K  V+T+  LI+GLC+
Sbjct: 258 ANEMLQVGVEWNVVTYTALIDGLCGWENPTEGLHLLDEMVELDIKVTVVTFCVLIDGLCK 317

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A++ F  ++N    FG+  + N   YT +IDGLCK   V+ A  LF QM  K +
Sbjct: 318 NKLVSKAIDYFGRISN---DFGL--QANAAIYTAMIDGLCKGNQVEAATTLFEQMAQKGL 372

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PD   Y SL+ G     +  EA  L  +M++ G++ D++ +  ++  L    ++ +A  
Sbjct: 373 VPDRTAYTSLMDGNFKQGNVLEALALRDKMVETGMKLDLLAYTSLVWGLSHCNQLQKARS 432

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            LE MI  G++P+     +++      G +N A EL
Sbjct: 433 FLEEMIGEGIHPDEVLCISVLKKHYELGCINEAVEL 468


>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
           chloroplastic-like [Glycine max]
          Length = 1113

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/265 (32%), Positives = 138/265 (52%), Gaps = 6/265 (2%)

Query: 132 RLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAES 191
           ++   G   + Y+YN LI    + G       V  R++     P    +++L+  L    
Sbjct: 182 KMRQAGFVLNAYSYNGLIYFLLQPGFCKEALKVYKRMISEGLKPSMKTYSALMVALGRRR 241

Query: 192 RIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKP 251
                  L  +++  G +PN+ TY+  I  L R G    A  + + M +        C P
Sbjct: 242 DTGTIMDLLEEMETLGLRPNIYTYTICIRVLGRAGRIDDAYGILKTMEDEG------CGP 295

Query: 252 NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLL 311
           + VTYT +ID LC  G +DKAKEL+ +M+  +  PD+VTY +L+  F    D        
Sbjct: 296 DVVTYTVLIDALCAAGKLDKAKELYTKMRASSHKPDLVTYITLMSKFGNYGDLETVKRFW 355

Query: 312 IEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLT 371
            EM   G  PDVVT+ ++++ LCK+GK+D+A  +L++M +RG+ PN  T++TL+ G    
Sbjct: 356 SEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNL 415

Query: 372 GRVNHAKELFVSMESMGCKHTVFSY 396
            R++ A ELF +MES+G   T +SY
Sbjct: 416 RRLDEALELFNNMESLGVAPTAYSY 440



 Score =  151 bits (382), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 84/285 (29%), Positives = 148/285 (51%), Gaps = 6/285 (2%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P + ++NLL     K+K  D +  L+  +   G  P++ T+NI+I+   K   ++    +
Sbjct: 821  PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDL 880

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
               I+   F+P    +  LI GL    R  EA  +F ++  + CKPN   Y+ LING  +
Sbjct: 881  YYEIISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFGK 940

Query: 225  TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
             G+  +A +LF+ M     K G+  +P+  +YT +++ L   G VD A   F ++K   +
Sbjct: 941  AGNVNIACDLFKRMI----KEGI--RPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGL 994

Query: 285  NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            +PD V+YN +I+G   +    EA  L  EM ++G+ P++ T+N ++      G +D+A +
Sbjct: 995  DPDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGK 1054

Query: 345  LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
            + E +   G+ PN  T++ L+ G   +G  + A  +F  M  +GC
Sbjct: 1055 MFEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGC 1099



 Score =  144 bits (364), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 88/309 (28%), Positives = 154/309 (49%), Gaps = 9/309 (2%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  ++  M++     P + +++ L   L + +   T++ L + + + GL P++YTY I 
Sbjct: 210 EALKVYKRMIS-EGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYTIC 268

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           I    + GR+   + +L  +      PD V +T LI  LCA  ++ +A  L+TK++A   
Sbjct: 269 IRVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSH 328

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
           KP+++TY TL++     G        + EM A+G         P+ VTYT +++ LCK G
Sbjct: 329 KPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYA-------PDVVTYTILVEALCKSG 381

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A ++   M+ + I P++ TYN+LI G       +EA  L   M   GV P   ++ 
Sbjct: 382 KVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYV 441

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
           + +D   K G  ++A    E M  RG+ P+ +  +  +      GR+  AK++F  + + 
Sbjct: 442 LFIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNC 501

Query: 388 GCKHTVFSY 396
           G      +Y
Sbjct: 502 GLSPDSVTY 510



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 86/298 (28%), Positives = 143/298 (47%), Gaps = 7/298 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           ++AF + D M  +R   P L ++N L   L   +  D  L LF  + S G+ P  Y+Y +
Sbjct: 384 DQAFDMLDVM-RVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVL 442

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
            I+ + K+G          ++ +    P   A  + +  L    RI EA  +F  +   G
Sbjct: 443 FIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCG 502

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             P+ +TY+ ++    + G    A  L  EM +        C+P+ +   ++ID L K G
Sbjct: 503 LSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEG------CEPDIIVVNSLIDTLYKAG 556

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
            VD+A ++F ++KD  + P VVTYN LI G        +A  L   M + G  P+ VTFN
Sbjct: 557 RVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFN 616

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
            ++D LCKN  +D A ++   M +   +P+  T++T++ G    GR  +A   +  M+
Sbjct: 617 ALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFWFYHQMK 674



 Score =  137 bits (346), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 11/314 (3%)

Query: 84   AITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLY 143
            A+   + F  F   L   P+P    S+N L   L      +  L LF  + + G  P+++
Sbjct: 768  ALDAKKLFDKFTKSLGTHPTP---ESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIF 824

Query: 144  TYNILINCFCKMGRVSHGFVVLGRIL-RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTK 202
            TYN+L++   K  R+   F +   +L R C  P+ +    +I  L   + I +A  L+ +
Sbjct: 825  TYNLLLDAHGKSKRIDELFELYNEMLCRGC-KPNIITHNIIISALVKSNSINKALDLYYE 883

Query: 203  LKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDG 262
            + +    P   TY  LI GL + G +  A+ +FEEM +        CKPN   Y  +I+G
Sbjct: 884  IISGDFSPTPCTYGPLIGGLLKAGRSEEAMKIFEEMPDYQ------CKPNCAIYNILING 937

Query: 263  LCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPD 322
              K G V+ A +LF +M  + I PD+ +Y  L+         ++A     E+   G+ PD
Sbjct: 938  FGKAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLTGLDPD 997

Query: 323  VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
             V++N++++ L K+ +++EA  L   M  RG++P   T++ L+  F   G V+ A ++F 
Sbjct: 998  TVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFE 1057

Query: 383  SMESMGCKHTVFSY 396
             ++ MG +  VF+Y
Sbjct: 1058 ELQFMGLEPNVFTY 1071



 Score =  132 bits (331), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 92/328 (28%), Positives = 143/328 (43%), Gaps = 31/328 (9%)

Query: 100 MRPS--PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGR 157
           MR S   P L ++  L          +TV   +  + + G  PD+ TY IL+   CK G+
Sbjct: 323 MRASSHKPDLVTYITLMSKFGNYGDLETVKRFWSEMEADGYAPDVVTYTILVEALCKSGK 382

Query: 158 VSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYST 217
           V   F +L  +      P+   + +LI GL    R+ EA  LF  +++ G  P   +Y  
Sbjct: 383 VDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGVAPTAYSYVL 442

Query: 218 LINGLCRTGHTIVALNLFEEMANGN---------------GKFGVV-------------- 248
            I+   + G    AL+ FE+M                    + G +              
Sbjct: 443 FIDYYGKLGDPEKALDTFEKMKKRGIMPSIAACNASLYSLAEMGRIREAKDIFNDIHNCG 502

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             P++VTY  ++    K G +DKA +L  +M  +   PD++  NSLI     A   +EA 
Sbjct: 503 LSPDSVTYNMMMKCYSKAGQIDKATKLLTEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAW 562

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +   + D  + P VVT+N+++  L K GK+ +A  L   M   G  PNT TF+ L+D  
Sbjct: 563 QMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDLFGSMKESGCPPNTVTFNALLDCL 622

Query: 369 CLTGRVNHAKELFVSMESMGCKHTVFSY 396
           C    V+ A ++F  M  M C   V +Y
Sbjct: 623 CKNDAVDLALKMFCRMTIMNCSPDVLTY 650



 Score =  105 bits (262), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 139/306 (45%), Gaps = 33/306 (10%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N L   L K    D    +F RL    L P + TYNILI    K G++     +
Sbjct: 540 PDIIVVNSLIDTLYKAGRVDEAWQMFGRLKDLKLAPTVVTYNILITGLGKEGKLLKALDL 599

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
            G +  S   P+ V F +L+  LC    +  A  +F ++    C P+V+TY+T+I GL +
Sbjct: 600 FGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIK 659

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A   + +M     KF     P+ VT  T++ G+ K+G V+ A ++ ++   ++ 
Sbjct: 660 EGRAGYAFWFYHQMK----KF---LSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQS- 711

Query: 285 NPDVVTYNSLIHGFCYANDWNE-ANCLLIEM-MDQGVQ--PDVVTFNVIMDE-------- 332
              + T N +         W E   C+LIE  +++ +     +V  ++  D+        
Sbjct: 712 --GLQTSNQV---------WGELMECILIEAEIEEAISFAEGLVCNSICQDDNLILPLIR 760

Query: 333 -LCKNGKMDEASRLLELMILR-GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            LCK  K  +A +L +      G +P   +++ LMDG         A +LFV M++ GC 
Sbjct: 761 VLCKQKKALDAKKLFDKFTKSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCC 820

Query: 391 HTVFSY 396
             +F+Y
Sbjct: 821 PNIFTY 826



 Score =  105 bits (261), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 44/324 (13%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   +FN L  CL K    D  L +F R+      PD+ TYN +I    K GR  + F 
Sbjct: 609 PPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLTYNTIIYGLIKEGRAGYAFW 668

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEA----------AALFTKLKAFG------ 207
              + ++   +PD V   +L+ G+  + R+ +A          + L T  + +G      
Sbjct: 669 FYHQ-MKKFLSPDHVTLYTLLPGVVKDGRVEDAIKIVMEFVHQSGLQTSNQVWGELMECI 727

Query: 208 ---------------------CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
                                C+ + +    LI  LC+    + A  LF++     G   
Sbjct: 728 LIEAEIEEAISFAEGLVCNSICQDDNLILP-LIRVLCKQKKALDAKKLFDKFTKSLG--- 783

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P   +Y  ++DGL      + A +LF++MK+    P++ TYN L+     +   +E
Sbjct: 784 --THPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRIDE 841

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
              L  EM+ +G +P+++T N+I+  L K+  +++A  L   +I    +P   T+  L+ 
Sbjct: 842 LFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLIG 901

Query: 367 GFCLTGRVNHAKELFVSMESMGCK 390
           G    GR   A ++F  M    CK
Sbjct: 902 GLLKAGRSEEAMKIFEEMPDYQCK 925



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 56/116 (48%)

Query: 105  PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
            P   S+NL+   L K++  +  LSLF  + + G+ P+LYTYN LI  F   G V     +
Sbjct: 996  PDTVSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKM 1055

Query: 165  LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLIN 220
               +      P+   + +LI+G         A ++F K+   GC PN  T++ L N
Sbjct: 1056 FEELQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKKMMIVGCSPNAGTFAQLPN 1111



 Score = 58.2 bits (139), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 69/154 (44%), Gaps = 10/154 (6%)

Query: 248 VCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH-----GFCYAN 302
           V   N  TY TI   L  +G + +A     +M+      +  +YN LI+     GFC   
Sbjct: 152 VINRNPNTYLTIFKALSIKGGIRQAPFALGKMRQAGFVLNAYSYNGLIYFLLQPGFC--- 208

Query: 303 DWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFS 362
              EA  +   M+ +G++P + T++ +M  L +         LLE M   G+ PN  T++
Sbjct: 209 --KEALKVYKRMISEGLKPSMKTYSALMVALGRRRDTGTIMDLLEEMETLGLRPNIYTYT 266

Query: 363 TLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             +      GR++ A  +  +ME  GC   V +Y
Sbjct: 267 ICIRVLGRAGRIDDAYGILKTMEDEGCGPDVVTY 300


>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 809

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 120/468 (25%), Positives = 202/468 (43%), Gaps = 100/468 (21%)

Query: 15  ISISALRCNFSSSFPHTRKPKSSISKNEPSDPTTTAKLKESLRLTVKDRASLEQFLKERC 74
           I+++ LR   S +F +  + K S       DP T A +   L      R  L+  L E  
Sbjct: 64  ITLNNLRNEPSLAFSYFNQLKES---GYSHDPYTYAAIVRILCFWGWSR-KLDSILMEII 119

Query: 75  KSSGQGDITAIT---------PNEAFCI---------------------FDYMLNMRPS- 103
           K  G  D   +           NE+F +                     FD +L  +   
Sbjct: 120 KKDGNLDFGIVNLFEALGDGIANESFSVLVQVSDALIKVCVASGMFDQAFDVLLQTKHCG 179

Query: 104 -PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSH-- 160
             P + S N L   L +++  D  ++++++L + GL P+ YTY I I  FC+ G ++   
Sbjct: 180 FAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGFCRKGNLAEAI 239

Query: 161 ---------------------------------GFVVLGRILRSCFTPDAVAFTSLIKGL 187
                                            GF VL  ++ +    D  A+T +I+G 
Sbjct: 240 DVFRDMEESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMDVFAYTVVIRGF 299

Query: 188 CAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMA-------- 239
           C+E ++ EA ++  +++  G  P+V  Y  LI+G C  G+ + AL L +EM         
Sbjct: 300 CSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGNLLKALALHDEMVSKGVKTNC 359

Query: 240 -------NGNGKFGVVCKP--------------NTVTYTTIIDGLCKEGFVDKAKELFLQ 278
                   G  + G+  +               +   Y  ++D LCK G V++A EL ++
Sbjct: 360 VILSSILQGLSQMGMASEVANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVE 419

Query: 279 MKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGK 338
           MK K + PD++ Y ++I G+       +A  +  EM D G +PD+VT+NV+     +NG 
Sbjct: 420 MKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGL 479

Query: 339 MDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
             EA  LL  M  +GV P+T T + +++G C+ G+V+ A+  F ++E 
Sbjct: 480 TQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEE 527



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 154/306 (50%), Gaps = 45/306 (14%)

Query: 126 VLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIK 185
           V + FK     G+F D   YN++++  CK+G+V     +L  +      PD + +T++I 
Sbjct: 378 VANQFKEFKKMGIFFDEACYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVIS 437

Query: 186 GLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKF 245
           G   + ++++A  ++ ++K  G KP+++TY+ L  G  R G T  AL+L   M       
Sbjct: 438 GYFLKGKVVDALNIYREMKDIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQ---- 493

Query: 246 GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWN 305
           GV  KP+TVT+  II+GLC  G VD A+  F  +++K +      Y+++++G+C AN  N
Sbjct: 494 GV--KPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEEKCLE----NYSAMVNGYCEANHVN 547

Query: 306 EANCLLIEMMDQG-----------------------------------VQPDVVTFNVIM 330
           +A  LLI +  QG                                   + P ++ ++ ++
Sbjct: 548 KAFALLIRLSKQGRILKKASFFKLLGNLCSEGDSEKALCLLETMVALNINPTMIMYSKVI 607

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
             L + G+M++A  +  +++ RG+ P+  T++ +++G+C   ++  A  +   M++ G +
Sbjct: 608 GALFQAGEMEKAQYVFNMLVDRGLAPDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIE 667

Query: 391 HTVFSY 396
             V +Y
Sbjct: 668 PDVITY 673



 Score =  127 bits (320), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 147/336 (43%), Gaps = 60/336 (17%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++N+L G  ++       LSL   + + G+ PD  T+N++I   C  G+V      
Sbjct: 462 PDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAF 521

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +   C       +++++ G C  + + +A AL  +L   G      ++  L+  LC 
Sbjct: 522 FDNLEEKCLEN----YSAMVNGYCEANHVNKAFALLIRLSKQGRILKKASFFKLLGNLCS 577

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G +  AL L E M   N        P  + Y+ +I  L + G ++KA+ +F  + D+ +
Sbjct: 578 EGDSEKALCLLETMVALN------INPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGL 631

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM-------------- 330
            PDV+TY  +I+G+C  N   EA  +L +M ++G++PDV+T+ V++              
Sbjct: 632 APDVITYTIMINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLNNCSKIDLRSSSSS 691

Query: 331 ------------------------------------DELCKNGKMDEASRLLELMILRGV 354
                                               D+ CK   + +A  L   MI RG+
Sbjct: 692 LDAMKSKENMMDPSALWSEMKDMDIKPDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGL 751

Query: 355 NPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCK 390
            P+T T++ L+ G+C  G +  A  LF  M + G +
Sbjct: 752 APDTVTYTALLSGYCNVGNIKKAVVLFDEMLNKGIR 787



 Score =  117 bits (292), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 133/278 (47%), Gaps = 11/278 (3%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA  +   M   +  P  +    ++ G   K K  D  L++++ +   G  PD+ TYN+L
Sbjct: 412 EAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDA-LNIYREMKDIGHKPDIVTYNVL 470

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
              F + G       +L  +      PD V    +I+GLC   ++ +A A F  L+   C
Sbjct: 471 AGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEGLCIGGKVDDAQAFFDNLEE-KC 529

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             N   YS ++NG C   H   A  L   ++    K G + K    ++  ++  LC EG 
Sbjct: 530 LEN---YSAMVNGYCEANHVNKAFALLIRLS----KQGRILKK--ASFFKLLGNLCSEGD 580

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +KA  L   M   NINP ++ Y+ +I     A +  +A  +   ++D+G+ PDV+T+ +
Sbjct: 581 SEKALCLLETMVALNINPTMIMYSKVIGALFQAGEMEKAQYVFNMLVDRGLAPDVITYTI 640

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           +++  C+  KM EA  +L  M  RG+ P+  T++ L++
Sbjct: 641 MINGYCRMNKMKEAWHVLGDMKNRGIEPDVITYTVLLN 678



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/241 (30%), Positives = 111/241 (46%), Gaps = 6/241 (2%)

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           LI      G     F VL +     F P  ++   L+  L    ++  A A++ +LKAFG
Sbjct: 155 LIKVCVASGMFDQAFDVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFG 214

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEG 267
             PN  TY+  I G CR G+   A+++F +M       GV   PN+ +YTT I+GLC  G
Sbjct: 215 LNPNDYTYTIAIKGFCRKGNLAEAIDVFRDMEES----GVT--PNSFSYTTFIEGLCLHG 268

Query: 268 FVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFN 327
             D   ++   + +  I  DV  Y  +I GFC      EA  +L EM  QG  PDV  + 
Sbjct: 269 RSDLGFKVLQDVINAKIPMDVFAYTVVIRGFCSEMKLKEAESILREMEKQGFAPDVYVYC 328

Query: 328 VIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESM 387
            ++   C  G + +A  L + M+ +GV  N    S+++ G    G  +     F   + M
Sbjct: 329 ALISGYCMVGNLLKALALHDEMVSKGVKTNCVILSSILQGLSQMGMASEVANQFKEFKKM 388

Query: 388 G 388
           G
Sbjct: 389 G 389



 Score = 42.7 bits (99), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 21/79 (26%), Positives = 36/79 (45%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  + +L     KT +    ++LF  +   GL PD  TY  L++ +C +G +    V+
Sbjct: 718 PDVICYTVLIDKHCKTNNIQDAINLFNEMIDRGLAPDTVTYTALLSGYCNVGNIKKAVVL 777

Query: 165 LGRILRSCFTPDAVAFTSL 183
              +L     PDA   + L
Sbjct: 778 FDEMLNKGIRPDAHTMSVL 796


>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1246

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/290 (31%), Positives = 149/290 (51%), Gaps = 7/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           LT++  +F  L+            +++   G   + Y+YN LI+     G  +    V  
Sbjct: 166 LTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLP-GFCNEALKVYK 224

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           R++     P    +++L+  L       +   L  ++K+ G +PN+ TY+  I  L R  
Sbjct: 225 RMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICIRALGRAR 284

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  +F+EM +        C P+ +TYT +ID LC  G +DKAKEL+++M+  + +P
Sbjct: 285 RIDDAWGIFKEMDDEG------CGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHSP 338

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           D VTY +L+  F    D         EM   G  PDVVT+ ++++ LCK+G +D A  +L
Sbjct: 339 DRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDML 398

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++M  +G+ PN  T++T++ G     R++ A EL  +MES+G K T FSY
Sbjct: 399 DVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSY 448



 Score =  157 bits (398), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 90/301 (29%), Positives = 161/301 (53%), Gaps = 7/301 (2%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            +A  +F+ M +    P   T +NLL     K+K  + +  L+  + S G  P+  T+NI+
Sbjct: 814  KALELFEDMKSAGTHPNNFT-YNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNII 872

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            I+   K   ++    +   ++   F+P    +  LI GL    R  +A  +F ++  +GC
Sbjct: 873  ISALVKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGC 932

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             PN + Y+ LING  ++G    A  LF++M     K G+  +P+  +YT +++ LC  G 
Sbjct: 933  GPNSVIYNILINGFGKSGEIDFACELFKKMV----KEGI--RPDLKSYTILVECLCITGR 986

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +D+A + F ++K   ++PD V+YN +I+G   +   +EA  L  EM ++G+ PD+ T+N 
Sbjct: 987  IDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNA 1046

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            ++  L   GK+D A ++ E + L G+ P+  T++ L+ G  L+G  + A  +F  M  +G
Sbjct: 1047 LILHLGIAGKVDVAVKMYEELQLVGLEPSVFTYNALIRGHSLSGNKDQAFSVFKKMMVVG 1106

Query: 389  C 389
            C
Sbjct: 1107 C 1107



 Score =  151 bits (381), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 91/308 (29%), Positives = 161/308 (52%), Gaps = 6/308 (1%)

Query: 89   EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
            +A  +FD         P L S+N L   L  +   +  L LF+ + S G  P+ +TYN+L
Sbjct: 778  DAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLL 837

Query: 149  INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
            ++   K  R++  + +   +      P+A+    +I  L   + + +A  L+ +L +   
Sbjct: 838  LDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISALVKSNNLNKALDLYYELMSGDF 897

Query: 209  KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
             P   TY  LI+GL + G +  A+ +FEEM +    +G  C PN+V Y  +I+G  K G 
Sbjct: 898  SPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLD----YG--CGPNSVIYNILINGFGKSGE 951

Query: 269  VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
            +D A ELF +M  + I PD+ +Y  L+   C     +EA     E+   G+ PD V++N 
Sbjct: 952  IDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEELKLTGLDPDTVSYNF 1011

Query: 329  IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
            I++ L K+ ++DEA  L   M  RG++P+  T++ L+    + G+V+ A +++  ++ +G
Sbjct: 1012 IINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALILHLGIAGKVDVAVKMYEELQLVG 1071

Query: 389  CKHTVFSY 396
             + +VF+Y
Sbjct: 1072 LEPSVFTY 1079



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 88/312 (28%), Positives = 155/312 (49%), Gaps = 13/312 (4%)

Query: 88  NEAFCIFDYMLN--MRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTY 145
           NEA  ++  M++  M+PS   + +++ L   L +      +++L + + S GL P++YTY
Sbjct: 217 NEALKVYKRMISEGMKPS---MKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTY 273

Query: 146 NILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKA 205
            I I    +  R+   + +   +      PD + +T LI  LCA  ++ +A  L+ K++A
Sbjct: 274 TICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRA 333

Query: 206 FGCKPNVITYSTLINGLCRTGHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLC 264
               P+ +TY TL++   + G        + EM  +G         P+ VTYT +I+ LC
Sbjct: 334 SSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYA-------PDVVTYTILIEALC 386

Query: 265 KEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVV 324
           K G VD+A ++   M  K I P++ TYN++I G   A   +EA  LL  M   GV+P   
Sbjct: 387 KSGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAF 446

Query: 325 TFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
           ++ + +D   K+G   +A    E M  RG+ P+ +  +  +     TGR++ A+++F  +
Sbjct: 447 SYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDL 506

Query: 385 ESMGCKHTVFSY 396
              G      +Y
Sbjct: 507 HKCGLSPDSVTY 518



 Score =  125 bits (313), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 88/324 (27%), Positives = 151/324 (46%), Gaps = 15/324 (4%)

Query: 62  DRASLEQFLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTK 121
           D  +    ++  CKS   GD+     + AF + D M   +   P L ++N +   L K +
Sbjct: 374 DVVTYTILIEALCKS---GDV-----DRAFDMLDVM-TTKGIFPNLHTYNTMICGLLKAR 424

Query: 122 HYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFT 181
             D  L L + + S G+ P  ++Y + I+ + K G  +        + +    P   A  
Sbjct: 425 RLDEALELLENMESLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACN 484

Query: 182 SLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANG 241
           + +  L    RI EA  +F  L   G  P+ +TY+ L+    + G    A  L  EM + 
Sbjct: 485 ASLYTLAETGRISEAEDIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISK 544

Query: 242 NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYA 301
                  C+P+ +   ++I+ L K G VD A ++F ++K+  + P VVTYN L+ G    
Sbjct: 545 G------CEPDVMIINSLINTLYKAGRVDAAWKMFGRLKNLKLAPTVVTYNILLTGLGKE 598

Query: 302 NDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTF 361
               +A  L   M + G  P+ +TFN ++D L KN  +D A ++   M +   NP+  T+
Sbjct: 599 GKILKALELFGSMTESGCPPNTITFNSLLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTY 658

Query: 362 STLMDGFCLTGRVNHAKELFVSME 385
           +T++ G    GR+++A   F  M+
Sbjct: 659 NTIIYGLIREGRIDYAFWFFHQMK 682



 Score =  124 bits (311), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 143/330 (43%), Gaps = 31/330 (9%)

Query: 98  LNMRPSP--PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKM 155
           + MR S   P   ++  L     K    +TV   +  +   G  PD+ TY ILI   CK 
Sbjct: 329 VKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCKS 388

Query: 156 GRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITY 215
           G V   F +L  +      P+   + ++I GL    R+ EA  L   +++ G KP   +Y
Sbjct: 389 GDVDRAFDMLDVMTTKGIFPNLHTYNTMICGLLKARRLDEALELLENMESLGVKPTAFSY 448

Query: 216 STLINGLCRTGHTIVALNLFEEM---------ANGNGKFGVVCK---------------- 250
              I+   ++G    A++ FE M         A  N     + +                
Sbjct: 449 VLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAEDIFNDLHK 508

Query: 251 ----PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
               P++VTY  ++    K G +DKA +L  +M  K   PDV+  NSLI+    A   + 
Sbjct: 509 CGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLYKAGRVDA 568

Query: 307 ANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMD 366
           A  +   + +  + P VVT+N+++  L K GK+ +A  L   M   G  PNT TF++L+D
Sbjct: 569 AWKMFGRLKNLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNSLLD 628

Query: 367 GFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
                  V+ A ++F  M  M C   V +Y
Sbjct: 629 CLSKNDAVDLALKMFCRMTMMNCNPDVLTY 658



 Score =  124 bits (311), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 80/327 (24%), Positives = 149/327 (45%), Gaps = 41/327 (12%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++ +    L + +  D    +FK ++  G  PD+ TY +LI+  C  G++     +
Sbjct: 268 PNIYTYTICIRALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKEL 327

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
             ++  S  +PD V + +L+        +      + +++  G  P+V+TY+ LI  LC+
Sbjct: 328 YVKMRASSHSPDRVTYITLMDKFGKVGDLETVKRFWNEMEVDGYAPDVVTYTILIEALCK 387

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKEL--------- 275
           +G    A ++ + M    G F     PN  TY T+I GL K   +D+A EL         
Sbjct: 388 SGDVDRAFDMLDVMTT-KGIF-----PNLHTYNTMICGLLKARRLDEALELLENMESLGV 441

Query: 276 --------------------------FLQMKDKNINPDVVTYNSLIHGFCYANDWNEANC 309
                                     F  MK + I P +   N+ ++        +EA  
Sbjct: 442 KPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRGIMPSIAACNASLYTLAETGRISEAED 501

Query: 310 LLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
           +  ++   G+ PD VT+N++M    K G++D+A++LL  MI +G  P+    ++L++   
Sbjct: 502 IFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTLY 561

Query: 370 LTGRVNHAKELFVSMESMGCKHTVFSY 396
             GRV+ A ++F  ++++    TV +Y
Sbjct: 562 KAGRVDAAWKMFGRLKNLKLAPTVVTY 588



 Score =  113 bits (283), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 161/373 (43%), Gaps = 68/373 (18%)

Query: 90   AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
            A  +F  M  M  +P  LT   +++G L +    D     F ++    L PD  T   LI
Sbjct: 639  ALKMFCRMTMMNCNPDVLTYNTIIYG-LIREGRIDYAFWFFHQMKKF-LSPDYVTLCTLI 696

Query: 150  NCFCKMGRVSHGF-VVLGRILRSCFT-------------------PDAVAFTS------- 182
                + GRV     VV+  + ++C                      +A++F         
Sbjct: 697  PGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEAISFAEILVCNSV 756

Query: 183  ---------LIKGLCAESRIMEAAALFTKL-KAFGCKPNVITYSTLINGLCRTGHTIVAL 232
                     LIK LC   + ++A  +F K  K  G  P + +Y+ L++GL  +  T  AL
Sbjct: 757  CQDDHVMLPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLMDGLLGSNFTEKAL 816

Query: 233  NLFEEMA---------------NGNGKFGVV--------------CKPNTVTYTTIIDGL 263
             LFE+M                + +GK   +              C+PN +T+  II  L
Sbjct: 817  ELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876

Query: 264  CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             K   ++KA +L+ ++   + +P   TY  LI G   A    +A  +  EM+D G  P+ 
Sbjct: 877  VKSNNLNKALDLYYELMSGDFSPTPCTYGPLIDGLLKAGRSEQAMKIFEEMLDYGCGPNS 936

Query: 324  VTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVS 383
            V +N++++   K+G++D A  L + M+  G+ P+  +++ L++  C+TGR++ A + F  
Sbjct: 937  VIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYFEE 996

Query: 384  MESMGCKHTVFSY 396
            ++  G      SY
Sbjct: 997  LKLTGLDPDTVSY 1009



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 82/331 (24%), Positives = 145/331 (43%), Gaps = 35/331 (10%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           + A+ +F  + N++ +P  +T +N+L   L K       L LF  +  +G  P+  T+N 
Sbjct: 567 DAAWKMFGRLKNLKLAPTVVT-YNILLTGLGKEGKILKALELFGSMTESGCPPNTITFNS 625

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L++C  K   V     +  R+      PD + + ++I GL  E RI  A   F ++K F 
Sbjct: 626 LLDCLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYAFWFFHQMKKF- 684

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANG-----NGKF----------------- 245
             P+ +T  TLI G+ R G    A+ +  E  +      N +F                 
Sbjct: 685 LSPDYVTLCTLIPGVVRHGRVEDAIKVVMEFVHQACLQTNSQFWGELMECILTEAEIEEA 744

Query: 246 ---------GVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM-KDKNINPDVVTYNSLI 295
                      VC+ + V    +I  LCK      A+ +F +  K+  I+P + +YN L+
Sbjct: 745 ISFAEILVCNSVCQDDHVM-LPLIKVLCKRKKALDAQNVFDKFTKNLGIHPTLESYNCLM 803

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            G   +N   +A  L  +M   G  P+  T+N+++D   K+ ++++   L   M  RG  
Sbjct: 804 DGLLGSNFTEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCE 863

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           PN  T + ++     +  +N A +L+  + S
Sbjct: 864 PNAITHNIIISALVKSNNLNKALDLYYELMS 894



 Score = 65.9 bits (159), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 20/213 (9%)

Query: 199 LFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGK-------FGVVCKP 251
           + T LK+     +  +Y  +++ L    HT  A N   E+     +       F ++ K 
Sbjct: 101 VMTILKSISDPNSAFSYFKIVSQLTNFVHTTDACNYMLEILREQRRIEDMVFVFDLMQKK 160

Query: 252 ----NTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH----GFCYAND 303
               N  TY TI   L  +G + +A     +M +     +  +YN LIH    GFC    
Sbjct: 161 VIYRNLTTYMTIFKALSIKGGIGRAPFALRKMTEVGFILNAYSYNGLIHLLLPGFC---- 216

Query: 304 WNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFST 363
            NEA  +   M+ +G++P + T++ +M  L + G   +   LLE M   G+ PN  T++ 
Sbjct: 217 -NEALKVYKRMISEGMKPSMKTYSALMVALGRRGDTRKIMNLLEEMKSIGLRPNIYTYTI 275

Query: 364 LMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            +       R++ A  +F  M+  GC   V +Y
Sbjct: 276 CIRALGRARRIDDAWGIFKEMDDEGCGPDVITY 308


>gi|218185204|gb|EEC67631.1| hypothetical protein OsI_35025 [Oryza sativa Indica Group]
          Length = 800

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 90/304 (29%), Positives = 149/304 (49%), Gaps = 41/304 (13%)

Query: 127 LSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKG 186
           L L +     G  P +  YN+LI+ +C+ G +  G ++LG +    F P  V + SLI  
Sbjct: 434 LKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINC 493

Query: 187 LCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFG 246
           L  +  + +  +LF +++  G  PNV  Y+++I+ LC+      A+ + ++M      F 
Sbjct: 494 LGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVILKQM------FA 547

Query: 247 VVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNE 306
             C P+ +T+ T+I GLC EG V KA+    +   + +NP+ ++Y  LIHGFC   +   
Sbjct: 548 SGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMA 607

Query: 307 ANCLLIEMMDQGVQPDVVTF-----------------------------------NVIMD 331
           A+ LL+EMM +G  PDVVTF                                   NV++ 
Sbjct: 608 ASDLLMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLIS 667

Query: 332 ELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKH 391
            LCK   +  A  +LE M+ + V P+   ++TL+DGF  +  +  A+++F  ME  G + 
Sbjct: 668 GLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVRP 727

Query: 392 TVFS 395
            + S
Sbjct: 728 DIVS 731



 Score =  148 bits (374), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 82/273 (30%), Positives = 138/273 (50%), Gaps = 6/273 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P L ++  L  CL K    + + SLF  +   GL P++  YN +I+  CK    +   V+
Sbjct: 482 PTLVTYGSLINCLGKKGDLEKIGSLFLEMRKRGLSPNVQIYNSVIDALCKCWSATQAMVI 541

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L ++  S   PD + F +LI GLC E  + +A     +       PN ++Y+ LI+G C 
Sbjct: 542 LKQMFASGCDPDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCM 601

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G  + A +L  EM  G G       P+ VT+  +I GL   G V +A  +  +M ++ +
Sbjct: 602 RGELMAASDLLMEMM-GRGH-----TPDVVTFGALIHGLVVAGKVSEALIVREKMTERQV 655

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDV  YN LI G C  +    A  +L EM+++ VQPD   +  ++D   ++  + +A +
Sbjct: 656 FPDVNIYNVLISGLCKKHMLPAAKNILEEMLEKNVQPDEFVYATLIDGFIRSENLGDARK 715

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           + E M  +GV P+  + + ++ G+C  G ++ A
Sbjct: 716 IFEFMEHKGVRPDIVSCNAMIKGYCQFGMMSEA 748



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 62/213 (29%), Positives = 99/213 (46%), Gaps = 6/213 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + +FN L   L    H        +      L P+  +Y  LI+ FC  G +     +
Sbjct: 552 PDIITFNTLITGLCHEGHVRKAEHFLREAIRRELNPNQLSYTPLIHGFCMRGELMAASDL 611

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L  ++    TPD V F +LI GL    ++ EA  +  K+      P+V  Y+ LI+GLC+
Sbjct: 612 LMEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGLCK 671

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
                 A N+ EEM   N       +P+   Y T+IDG  +   +  A+++F  M+ K +
Sbjct: 672 KHMLPAAKNILEEMLEKN------VQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGV 725

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
            PD+V+ N++I G+C     +EA   +  M  Q
Sbjct: 726 RPDIVSCNAMIKGYCQFGMMSEAILCMSNMRKQ 758



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/224 (24%), Positives = 95/224 (42%), Gaps = 7/224 (3%)

Query: 174 TPDAVAFTSLIKGLCAESRIMEAAALFTKLK-AFGCKPNVITYSTLINGLCRTGHTIVAL 232
            P      +L+        + +A  +  +L+  +G  P V   + L+  L        A 
Sbjct: 340 APTRACLGALVAAYADAGMLGKATDMCERLREQYGSLPEVTHCNRLLKLLVEQRRWDDAR 399

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN 292
            L++EM       G     +  +   ++ GLC EG V++  +L          P VV YN
Sbjct: 400 KLYDEM------LGEDSGADNYSTCVLVRGLCLEGRVEEGLKLIEARWGAGCIPHVVFYN 453

Query: 293 SLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILR 352
            LI G+C   D      LL EM  +G  P +VT+  +++ L K G +++   L   M  R
Sbjct: 454 VLIDGYCRRGDMGRGLLLLGEMEAKGFLPTLVTYGSLINCLGKKGDLEKIGSLFLEMRKR 513

Query: 353 GVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           G++PN   +++++D  C       A  +   M + GC   + ++
Sbjct: 514 GLSPNVQIYNSVIDALCKCWSATQAMVILKQMFASGCDPDIITF 557


>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g79540-like [Brachypodium distachyon]
          Length = 801

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/292 (30%), Positives = 144/292 (49%), Gaps = 6/292 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P    +N +F  L         L+L+ R+ S+G  P+  TY +L++  CK G       +
Sbjct: 177 PTAFVYNAVFQVLVDRGVILLALALYNRMVSSGCLPNSTTYIVLMDGLCKRGMAVDALKM 236

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              +L     PD   +T L+  LC E RI +A  L   +K  GC P+ +TY+  ++GLC+
Sbjct: 237 FDEMLERGIVPDVKIYTVLLSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCK 296

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A + FE + +G    G++       Y+ +IDGL + G  D+    + +M  K+I
Sbjct: 297 AGRVDEAFHRFELLQDGGFTLGLI------GYSCLIDGLFQAGRFDEGLSYYTEMLGKSI 350

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
           +PD+  Y  LI  F  A    +A  LL EM D+G  PD   +N ++  L   G +D A  
Sbjct: 351 SPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGNIDRAQS 410

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           L+  M+   V  +++T + ++ G C  G ++ A ++F  M   GC  TV +Y
Sbjct: 411 LMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTY 462



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 90/296 (30%), Positives = 149/296 (50%), Gaps = 21/296 (7%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  ++ L   L +   +D  LS +  +    + PD+  Y ILI  F + GR    F++L 
Sbjct: 319 LIGYSCLIDGLFQAGRFDEGLSYYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLD 378

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            +    F PD   + +L+K L     I  A +L +++       +  T++ +I GLC+ G
Sbjct: 379 EMKDKGFVPDTFCYNTLLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKG 438

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F+EM    G+ G  C P  +TY  +IDGL + G +++A+ LF +M+  N NP
Sbjct: 439 LIDKAMQVFDEM----GEHG--CHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGN-NP 491

Query: 287 --------------DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDE 332
                         D  +   L+ G C +    +A  LL  +++ GV PDVVT+N +++ 
Sbjct: 492 SLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLING 551

Query: 333 LCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           LCK   +D A RL + + L+G++P+  T+ TL+DG     R N A  LF ++   G
Sbjct: 552 LCKAKNLDGALRLFKELQLKGISPDEITYGTLIDGLWRAHRENDATMLFQNILRSG 607



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 148/303 (48%), Gaps = 8/303 (2%)

Query: 88  NEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNI 147
           +E    +  ML    SP  +T + +L    A+         L   +   G  PD + YN 
Sbjct: 336 DEGLSYYTEMLGKSISPD-ITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNT 394

Query: 148 LINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFG 207
           L+     +G +     ++  +L++    D+     +I GLC +  I +A  +F ++   G
Sbjct: 395 LLKALFDVGNIDRAQSLMSEMLQNNVVLDSTTHNIMICGLCKKGLIDKAMQVFDEMGEHG 454

Query: 208 CKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNG-------KFGVVCKPNTVTYTTII 260
           C P V+TY+ LI+GL R G    A  LF +M  GN          G     +T +   ++
Sbjct: 455 CHPTVMTYNALIDGLYRAGMLEEARMLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKLV 514

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DG+C+ G V KA +L   + +  + PDVVTYN+LI+G C A + + A  L  E+  +G+ 
Sbjct: 515 DGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGIS 574

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
           PD +T+  ++D L +  + ++A+ L + ++  G  P+   ++T+M   C   +++ A  L
Sbjct: 575 PDEITYGTLIDGLWRAHRENDATMLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINL 634

Query: 381 FVS 383
           ++ 
Sbjct: 635 WLD 637



 Score =  128 bits (321), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 87/307 (28%), Positives = 142/307 (46%), Gaps = 21/307 (6%)

Query: 104 PPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFV 163
           PP   ++ +    L K    D     F+ L   G    L  Y+ LI+   + GR   G  
Sbjct: 281 PPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTLGLIGYSCLIDGLFQAGRFDEGLS 340

Query: 164 VLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLC 223
               +L    +PD   +T LI+      R  +A  L  ++K  G  P+   Y+TL+  L 
Sbjct: 341 YYTEMLGKSISPDITLYTILIRRFAEAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALF 400

Query: 224 RTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKN 283
             G+   A +L  EM   N    VV   ++ T+  +I GLCK+G +DKA ++F +M +  
Sbjct: 401 DVGNIDRAQSLMSEMLQNN----VVL--DSTTHNIMICGLCKKGLIDKAMQVFDEMGEHG 454

Query: 284 INPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQP--------------DVVTFNVI 329
            +P V+TYN+LI G   A    EA  +L   M+ G  P              D  +   +
Sbjct: 455 CHPTVMTYNALIDGLYRAGMLEEAR-MLFHKMEMGNNPSLFLRLTLGANQVRDTESLRKL 513

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +D +C++G++ +A +LL  +I  GV P+  T++TL++G C    ++ A  LF  ++  G 
Sbjct: 514 VDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGI 573

Query: 390 KHTVFSY 396
                +Y
Sbjct: 574 SPDEITY 580



 Score =  117 bits (293), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 65/208 (31%), Positives = 99/208 (47%), Gaps = 6/208 (2%)

Query: 177 AVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE 236
           + AF +L+    +  R  EA   F+++  F C+P    Y+ +   L   G  ++AL L+ 
Sbjct: 144 SAAFRALVLAHSSAGRHQEAVEAFSRMGDFDCRPTAFVYNAVFQVLVDRGVILLALALYN 203

Query: 237 EMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIH 296
            M +        C PN+ TY  ++DGLCK G    A ++F +M ++ I PDV  Y  L+ 
Sbjct: 204 RMVSSG------CLPNSTTYIVLMDGLCKRGMAVDALKMFDEMLERGIVPDVKIYTVLLS 257

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
             C      +A  LL  M + G  PD VT+ V +  LCK G++DEA    EL+   G   
Sbjct: 258 SLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGFTL 317

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSM 384
               +S L+DG    GR +     +  M
Sbjct: 318 GLIGYSCLIDGLFQAGRFDEGLSYYTEM 345



 Score = 92.4 bits (228), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 74/299 (24%), Positives = 137/299 (45%), Gaps = 28/299 (9%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
           T+ N++   L K    D  + +F  +   G  P + TYN LI+   + G +    ++  +
Sbjct: 425 TTHNIMICGLCKKGLIDKAMQVFDEMGEHGCHPTVMTYNALIDGLYRAGMLEEARMLFHK 484

Query: 168 I-------------LRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVIT 214
           +             L +    D  +   L+ G+C   ++++A  L   +   G  P+V+T
Sbjct: 485 MEMGNNPSLFLRLTLGANQVRDTESLRKLVDGMCQSGQVLKAYKLLRGIIESGVVPDVVT 544

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           Y+TLINGLC+  +   AL LF+E+            P+ +TY T+IDGL +    + A  
Sbjct: 545 YNTLINGLCKAKNLDGALRLFKELQLKG------ISPDEITYGTLIDGLWRAHRENDATM 598

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ--GVQP-DVVTFNVIMD 331
           LF  +      P +  YN+++   C     ++A  L ++ + +   + P D V  N    
Sbjct: 599 LFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWLDYLPKKYNLSPEDEVIANA--R 656

Query: 332 ELCKNGKMDEASR-LLELMILRG-VNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +  ++G +DE  + L+++  + G +NPN  T   +  G C   +++ A  +F  +E  G
Sbjct: 657 KCFEDGFLDETVKELIKIDQVYGSLNPNPYTIWVI--GLCQVRKIDDALRIFHILEEFG 713



 Score = 42.7 bits (99), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 87/224 (38%), Gaps = 12/224 (5%)

Query: 103 SPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGF 162
           SP  +T   L+ G     +  D  + LF+ +  +G FP L  YN ++   C+M ++S   
Sbjct: 574 SPDEITYGTLIDGLWRAHRENDATM-LFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAI 632

Query: 163 VVLGRIL--RSCFTPDAVAFTSLIKGLCAESRIM-EAAALFTKLKAFGCKPNVITYSTLI 219
            +    L  +   +P+     +  K  C E   + E      K+       N   Y+  +
Sbjct: 633 NLWLDYLPKKYNLSPEDEVIANARK--CFEDGFLDETVKELIKIDQVYGSLNPNPYTIWV 690

Query: 220 NGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQM 279
            GLC+      AL +F  +     +FG+V  P       +I+ LC +  ++ A ++ +  
Sbjct: 691 IGLCQVRKIDDALRIFHILE----EFGIVVTPACC--ALLINYLCWDRNLNAAVDIMMYT 744

Query: 280 KDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDV 323
             K         N L+   C     ++A  L   M   G   DV
Sbjct: 745 LSKRFIVSQPVGNRLLRSLCIRYRRHDAQALSWRMHLVGYDMDV 788


>gi|242067038|ref|XP_002454808.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
 gi|241934639|gb|EES07784.1| hypothetical protein SORBIDRAFT_04g037860 [Sorghum bicolor]
          Length = 951

 Score =  159 bits (401), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 87/262 (33%), Positives = 143/262 (54%), Gaps = 6/262 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           +  +N L      +   D  L + +R+ + G+ P++ TY  LI  +CK   +   F +  
Sbjct: 222 VVGYNSLVAGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYE 281

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
            ++RS   PD V  ++L+ GLC + +  EA ALF ++   G  PN +TY TLI+ L +  
Sbjct: 282 GMVRSGVLPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKAR 341

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               +L L  EM +     GVV   + V YT ++D L KEG +++AK++    +  NI P
Sbjct: 342 RGSESLGLLGEMVS----RGVVM--DLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITP 395

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
           + VTY  L+   C A + + A  +L++M ++ V P+VVTF+ I++ L K G + +A+  +
Sbjct: 396 NFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYM 455

Query: 347 ELMILRGVNPNTSTFSTLMDGF 368
             M   G+ PN  T+ TL+DGF
Sbjct: 456 RKMKDSGIAPNVVTYGTLIDGF 477



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/319 (28%), Positives = 148/319 (46%), Gaps = 29/319 (9%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L  +  L   L K    +    + +   S  + P+  TY +L++  C+ G +     VL 
Sbjct: 362 LVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLL 421

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           ++      P+ V F+S+I GL     + +AA    K+K  G  PNV+TY TLI+G  +  
Sbjct: 422 QMEEKSVIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQ 481

Query: 227 HTIVALNLFEEM---------------ANGNGKFGVVCKPNT--------------VTYT 257
               AL+++ +M                NG  K G +                   V YT
Sbjct: 482 GQEAALDVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYT 541

Query: 258 TIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ 317
           T++DGL K G +  A ++  ++ +KN++PD V YN  I+  C    ++EA   L EM + 
Sbjct: 542 TLMDGLFKTGNMPAAFKVGQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNT 601

Query: 318 GVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHA 377
           G++PD  T+N ++   C+ GK  +A +LL+ M    + PN  T++TL+ G    G V  A
Sbjct: 602 GLEPDQATYNTMIAARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKA 661

Query: 378 KELFVSMESMGCKHTVFSY 396
           K L   M S G   T  ++
Sbjct: 662 KFLLNEMASAGFAPTSLTH 680



 Score =  142 bits (358), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 156/336 (46%), Gaps = 30/336 (8%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           AF +   ++    SP  +  +N+   CL     +    S  K + +TGL PD  TYN +I
Sbjct: 556 AFKVGQELMEKNLSPDAVV-YNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMI 614

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
              C+ G+ S    +L  + R+   P+ + +T+L+ GL     + +A  L  ++ + G  
Sbjct: 615 AARCREGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFA 674

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANG---------NGKFGVVC----------- 249
           P  +T+  ++     +    V L + E M            N    V+C           
Sbjct: 675 PTSLTHQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVV 734

Query: 250 ---------KPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCY 300
                     P+T+T+  +I G CK   +D A  ++ QM  + ++P++ T+N+L+ G   
Sbjct: 735 LDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATFNTLLGGLES 794

Query: 301 ANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTST 360
           A    EA+ +L +M   G++P+ +T+++++    K     EA RL   M+ +G  P  ST
Sbjct: 795 AGRIGEADTVLSDMKKVGLEPNNLTYDILVTGYAKKSNKVEALRLYCEMVSKGFIPKAST 854

Query: 361 FSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +++LM  F   G +N AKELF  M+  G  HT  +Y
Sbjct: 855 YNSLMSDFAKAGMMNQAKELFSEMKRRGVLHTSSTY 890



 Score =  141 bits (355), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 78/245 (31%), Positives = 131/245 (53%), Gaps = 6/245 (2%)

Query: 141 DLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALF 200
           D+  +N LI+ +CK+  ++    V+ R+       D V + SL+ G         A  + 
Sbjct: 186 DVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHSGDADAALEVV 245

Query: 201 TKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTII 260
            ++KA G +PNV+TY+ LI   C+      A +L+E M     + GV+  P+ VT + ++
Sbjct: 246 ERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMV----RSGVL--PDVVTLSALV 299

Query: 261 DGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQ 320
           DGLC++G   +A  LF +M    + P+ VTY +LI     A   +E+  LL EM+ +GV 
Sbjct: 300 DGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVV 359

Query: 321 PDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKEL 380
            D+V +  +MD L K GK++EA  +L       + PN  T++ L+D  C  G ++ A+++
Sbjct: 360 MDLVMYTALMDRLGKEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQV 419

Query: 381 FVSME 385
            + ME
Sbjct: 420 LLQME 424



 Score =  139 bits (350), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 91/309 (29%), Positives = 153/309 (49%), Gaps = 15/309 (4%)

Query: 69  FLKERCKSSGQGDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLS 128
            + E CK  G         +EAF +++ M+     P  +T   L+ G L +   +    +
Sbjct: 263 LIGEYCKGKGM--------DEAFSLYEGMVRSGVLPDVVTLSALVDG-LCRDGQFSEAYA 313

Query: 129 LFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLC 188
           LF+ ++  G+ P+  TY  LI+   K  R S    +LG ++      D V +T+L+  L 
Sbjct: 314 LFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLG 373

Query: 189 AESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVV 248
            E +I EA  +    ++    PN +TY+ L++  CR G+   A  +  +M   +      
Sbjct: 374 KEGKIEEAKDVLRHAQSDNITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKS------ 427

Query: 249 CKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEAN 308
             PN VT+++II+GL K G + KA +   +MKD  I P+VVTY +LI GF        A 
Sbjct: 428 VIPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAAL 487

Query: 309 CLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGF 368
            +  +M+ +GV+ +    + +++ L KNG ++ A  L + M  RG+  +   ++TLMDG 
Sbjct: 488 DVYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGL 547

Query: 369 CLTGRVNHA 377
             TG +  A
Sbjct: 548 FKTGNMPAA 556



 Score =  137 bits (345), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 144/284 (50%), Gaps = 6/284 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P + ++  L G   K K  D   SL++ +  +G+ PD+ T + L++  C+ G+ S  + +
Sbjct: 255 PNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLCRDGQFSEAYAL 314

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
              + +    P+ V + +LI  L    R  E+  L  ++ + G   +++ Y+ L++ L +
Sbjct: 315 FREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLVMYTALMDRLGK 374

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G    A ++     + N        PN VTYT ++D  C+ G +D A+++ LQM++K++
Sbjct: 375 EGKIEEAKDVLRHAQSDN------ITPNFVTYTVLVDAHCRAGNIDGAEQVLLQMEEKSV 428

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            P+VVT++S+I+G        +A   + +M D G+ P+VVT+  ++D   K    + A  
Sbjct: 429 IPNVVTFSSIINGLVKRGCLGKAADYMRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALD 488

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           +   M+  GV  N     +L++G    G +  A+ LF  M+  G
Sbjct: 489 VYRDMLHEGVEANNFVVDSLVNGLRKNGNIEGAEALFKDMDERG 532



 Score =  121 bits (304), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 85/305 (27%), Positives = 142/305 (46%), Gaps = 7/305 (2%)

Query: 80  GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLF 139
           G + A    +A  + + M +   +P  LT   +L  C + ++  D +L + + +   GL 
Sbjct: 651 GLLEAGVVKKAKFLLNEMASAGFAPTSLTHQRVLQAC-SGSRRPDVILEIHELMMGAGLH 709

Query: 140 PDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAAL 199
            D+  YN L++  C  G   +  VVL  +L     PD + F +LI G C  S +  A A+
Sbjct: 710 ADITVYNTLVHVLCCHGMARNATVVLDEMLTRGIAPDTITFNALILGHCKSSHLDNAFAI 769

Query: 200 FTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTI 259
           + ++   G  PN+ T++TL+ GL   G    A  +  +M     K G+  +PN +TY  +
Sbjct: 770 YAQMLHQGLSPNIATFNTLLGGLESAGRIGEADTVLSDMK----KVGL--EPNNLTYDIL 823

Query: 260 IDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGV 319
           + G  K+    +A  L+ +M  K   P   TYNSL+  F  A   N+A  L  EM  +GV
Sbjct: 824 VTGYAKKSNKVEALRLYCEMVSKGFIPKASTYNSLMSDFAKAGMMNQAKELFSEMKRRGV 883

Query: 320 QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKE 379
                T++++++   K     E   LL+ M   G  P+  T S++   F   G    A+ 
Sbjct: 884 LHTSSTYDILLNGWSKLRNGIEVRILLKDMKELGFKPSKGTISSMSRAFSRPGMTGEARR 943

Query: 380 LFVSM 384
           L  ++
Sbjct: 944 LLKTL 948



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 4/221 (1%)

Query: 176 DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLF 235
           D V++   +  L  +     A  + +++   G   + +T ST + GLCRTG    A  L 
Sbjct: 114 DTVSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALA 173

Query: 236 EEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLI 295
           E +  G G  G+    + V +  +IDG CK   +  A  +  +M  + +  DVV YNSL+
Sbjct: 174 EMLVRGRGIDGL----DVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLV 229

Query: 296 HGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVN 355
            GF ++ D + A  ++  M   GV+P+VVT+  ++ E CK   MDEA  L E M+  GV 
Sbjct: 230 AGFFHSGDADAALEVVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVL 289

Query: 356 PNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           P+  T S L+DG C  G+ + A  LF  M+ +G      +Y
Sbjct: 290 PDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTY 330



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 132/282 (46%), Gaps = 10/282 (3%)

Query: 108 TSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGR 167
            S+N+    L++  H      +   +   G+  D  T +  +   C+ G V     +   
Sbjct: 116 VSYNIFLAALSEQGHGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEM 175

Query: 168 ILRSCFTP--DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRT 225
           ++R       D V + +LI G C    +  A A+  ++   G   +V+ Y++L+ G   +
Sbjct: 176 LVRGRGIDGLDVVGWNALIDGYCKVQDMAAALAVVERMTTQGVALDVVGYNSLVAGFFHS 235

Query: 226 GHTIVALNLFEEM-ANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
           G    AL + E M A+G        +PN VTYT +I   CK   +D+A  L+  M    +
Sbjct: 236 GDADAALEVVERMKADG-------VEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGV 288

Query: 285 NPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASR 344
            PDVVT ++L+ G C    ++EA  L  EM   GV P+ VT+  ++D L K  +  E+  
Sbjct: 289 LPDVVTLSALVDGLCRDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLG 348

Query: 345 LLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
           LL  M+ RGV  +   ++ LMD     G++  AK++    +S
Sbjct: 349 LLGEMVSRGVVMDLVMYTALMDRLGKEGKIEEAKDVLRHAQS 390



 Score =  117 bits (294), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 87/302 (28%), Positives = 134/302 (44%), Gaps = 12/302 (3%)

Query: 101 RPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTG----LFPDLYTYNILINCFCKMG 156
           RP P    + N +       +     LSL +  +       +  D  +YNI +    + G
Sbjct: 70  RPVPGDTLTLNSIILSYCSLRSLRPALSLLRSSSGPQSQSQVAADTVSYNIFLAALSEQG 129

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKL-KAFGCKP-NVIT 214
                  VL  + +   + D V  ++ + GLC    + EAAAL   L +  G    +V+ 
Sbjct: 130 HGRLAPPVLSEMCKRGVSWDGVTVSTALVGLCRTGLVGEAAALAEMLVRGRGIDGLDVVG 189

Query: 215 YSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
           ++ LI+G C+      AL + E M       GV    + V Y +++ G    G  D A E
Sbjct: 190 WNALIDGYCKVQDMAAALAVVERMTTQ----GVAL--DVVGYNSLVAGFFHSGDADAALE 243

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +  +MK   + P+VVTY +LI  +C     +EA  L   M+  GV PDVVT + ++D LC
Sbjct: 244 VVERMKADGVEPNVVTYTALIGEYCKGKGMDEAFSLYEGMVRSGVLPDVVTLSALVDGLC 303

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
           ++G+  EA  L   M   GV PN  T+ TL+D      R + +  L   M S G    + 
Sbjct: 304 RDGQFSEAYALFREMDKIGVAPNHVTYCTLIDSLAKARRGSESLGLLGEMVSRGVVMDLV 363

Query: 395 SY 396
            Y
Sbjct: 364 MY 365



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 143/346 (41%), Gaps = 70/346 (20%)

Query: 115 GCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFT 174
           GCL K   Y       +++  +G+ P++ TY  LI+ F K         V   +L     
Sbjct: 446 GCLGKAADY------MRKMKDSGIAPNVVTYGTLIDGFFKFQGQEAALDVYRDMLHEGVE 499

Query: 175 PDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNL 234
            +     SL+ GL     I  A ALF  +   G   + + Y+TL++GL +TG+   A  +
Sbjct: 500 ANNFVVDSLVNGLRKNGNIEGAEALFKDMDERGLLLDHVNYTTLMDGLFKTGNMPAAFKV 559

Query: 235 FEEMANGN------------------GKFGVV-----------CKPNTVTYTTIIDGLCK 265
            +E+   N                  GKF               +P+  TY T+I   C+
Sbjct: 560 GQELMEKNLSPDAVVYNVFINCLCTLGKFSEAKSFLKEMRNTGLEPDQATYNTMIAARCR 619

Query: 266 EGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIE------------ 313
           EG   KA +L  +MK  +I P+++TY +L+ G   A    +A  LL E            
Sbjct: 620 EGKTSKALKLLKEMKRNSIKPNLITYTTLVVGLLEAGVVKKAKFLLNEMASAGFAPTSLT 679

Query: 314 -----------------------MMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMI 350
                                  MM  G+  D+  +N ++  LC +G    A+ +L+ M+
Sbjct: 680 HQRVLQACSGSRRPDVILEIHELMMGAGLHADITVYNTLVHVLCCHGMARNATVVLDEML 739

Query: 351 LRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
            RG+ P+T TF+ L+ G C +  +++A  ++  M   G    + ++
Sbjct: 740 TRGIAPDTITFNALILGHCKSSHLDNAFAIYAQMLHQGLSPNIATF 785


>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
          Length = 376

 Score =  158 bits (400), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPNV  Y+TLINGL    
Sbjct: 119 MAEQKGGVLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGAS 178

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+GLCK     +A  L  ++ DK ++P
Sbjct: 179 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDP 232

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +    A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 233 GVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 292

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 293 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 342



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 75/302 (24%), Positives = 143/302 (47%), Gaps = 30/302 (9%)

Query: 124 DTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSL 183
           D    ++K +  + + PD   YN ++N + ++ ++   F  L  ++ S       +F  +
Sbjct: 7   DGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKDCFE-LWEMMGSEGNRSVSSFNIM 65

Query: 184 IKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFE------- 236
           ++GL    ++ E  +++  +K  G   + ITY  L++G C+ G+   +L++ E       
Sbjct: 66  MRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLEMAEQKGG 125

Query: 237 --------EMANG--------------NGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKE 274
                    M NG              NG     CKPN   Y T+I+GL      + A  
Sbjct: 126 VLDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIR 185

Query: 275 LFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELC 334
           +F +M   + +P ++TYN+LI+G C    + EA  L+ E++D+G+ P V+T++++M  LC
Sbjct: 186 VFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLC 245

Query: 335 KNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVF 394
            + +++ A  L   +  +G  P+    + L+ G C  G++  A  L+  M    C   + 
Sbjct: 246 LDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLV 305

Query: 395 SY 396
           S+
Sbjct: 306 SH 307



 Score =  109 bits (273), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 55/203 (27%), Positives = 105/203 (51%), Gaps = 6/203 (2%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +  +N L   L     ++  + +F+ + +    P + TYN LIN  CK       + +
Sbjct: 162 PNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNKMFGEAYNL 221

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           +  +L     P  + ++ L+KGLC + R+  A  L+ ++ + G KP+V  ++ LI+GLC 
Sbjct: 222 VKELLDKGLDPGVITYSMLMKGLCLDHRVERALXLWNQVTSKGFKPDVQMHNILIHGLCS 281

Query: 225 TGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNI 284
            G   +AL+L+ +M          C PN V++ T+++G  K+G +  A  ++ ++    +
Sbjct: 282 VGKMQLALSLYFDMNRWK------CAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGL 335

Query: 285 NPDVVTYNSLIHGFCYANDWNEA 307
            PD+++YN  + G C  N  ++A
Sbjct: 336 EPDIISYNITLEGLCSCNRISDA 358



 Score = 69.3 bits (168), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/134 (29%), Positives = 69/134 (51%), Gaps = 3/134 (2%)

Query: 264 CKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQGVQPD 322
           C+ G +D A+ ++ ++ +  ++PD V YN++++G+       +  C  L EMM       
Sbjct: 1   CESGDIDGAERVYKEIVESKVSPDAVVYNAMLNGYFRVAKIKD--CFELWEMMGSEGNRS 58

Query: 323 VVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFV 382
           V +FN++M  L  NGK+DE   + ELM   G   ++ T+  L+ GFC  G ++ +  +  
Sbjct: 59  VSSFNIMMRGLFDNGKVDEVISIWELMKESGFVEDSITYGILVHGFCKNGYIDKSLHVLE 118

Query: 383 SMESMGCKHTVFSY 396
             E  G     F+Y
Sbjct: 119 MAEQKGGVLDAFAY 132


>gi|357449261|ref|XP_003594907.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483955|gb|AES65158.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1385

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 96/295 (32%), Positives = 155/295 (52%), Gaps = 11/295 (3%)

Query: 91  FCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILIN 150
           +  F  M+  R SP  + +FN+L   L +   + +   L ++++ TG FP   TYN L+N
Sbjct: 164 WSFFKEMIANRVSPN-VATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLN 222

Query: 151 CFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKP 210
            +CK GR      ++  +       D   +  LI  LC +SR  +   +  +++     P
Sbjct: 223 WYCKKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLILRRMRKNMVYP 282

Query: 211 NVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVD 270
           N ITY+TLINGL + G   VA  +FEEM+  N        PN+VTY T+I G C  G ++
Sbjct: 283 NEITYNTLINGLVKEGKIGVATKVFEEMSLCN------LLPNSVTYNTLIFGHCSNGNIE 336

Query: 271 KAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIM 330
           +A  L   M    + P+ VTY +L++G      +   + +L  M   GV+   +++  ++
Sbjct: 337 EALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISYTTMI 396

Query: 331 DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG----RVNHAKELF 381
           D LCKNG ++EA +LL+ M+   V+P+  TFS L++GF  TG    RV H+  ++
Sbjct: 397 DGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIY 451



 Score =  151 bits (381), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 85/288 (29%), Positives = 149/288 (51%), Gaps = 6/288 (2%)

Query: 97  MLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMG 156
           ++  R   P + + N++ G L K +  D   S FK + +  + P++ T+NIL+N  C+ G
Sbjct: 134 LMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMIANRVSPNVATFNILLNALCERG 193

Query: 157 RVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYS 216
           +     V+L ++  +   P AV + +L+   C + R   A+ L   + + G   +V TY+
Sbjct: 194 KFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYN 253

Query: 217 TLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELF 276
            LI+ LCR   +     +   M         +  PN +TY T+I+GL KEG +  A ++F
Sbjct: 254 VLIDDLCRKSRSAKGYLILRRMRKN------MVYPNEITYNTLINGLVKEGKIGVATKVF 307

Query: 277 LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKN 336
            +M   N+ P+ VTYN+LI G C   +  EA  L   M+  G++P+ VT+  +++ + K+
Sbjct: 308 EEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVMVSHGLRPNEVTYGALLNGISKH 367

Query: 337 GKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSM 384
            +    S +LE M + GV     +++T++DG C  G +  A +L   M
Sbjct: 368 AQFGLVSSVLERMRMDGVRVGHISYTTMIDGLCKNGLLEEAVQLLDDM 415



 Score =  138 bits (347), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 160/340 (47%), Gaps = 48/340 (14%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P   ++N L     K   Y     L   + S G+  D+ TYN+LI+  C+  R + G+++
Sbjct: 212 PTAVTYNTLLNWYCKKGRYKAASELIDAMASKGIAADVCTYNVLIDDLCRKSRSAKGYLI 271

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCR 224
           L R+ ++   P+ + + +LI GL  E +I  A  +F ++      PN +TY+TLI G C 
Sbjct: 272 LRRMRKNMVYPNEITYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCS 331

Query: 225 TGHTIVALNLFEEMA---------------NG---NGKFGVV-----------CKPNTVT 255
            G+   AL L + M                NG   + +FG+V            +   ++
Sbjct: 332 NGNIEEALRLCDVMVSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHIS 391

Query: 256 YTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYN-------------------SLIH 296
           YTT+IDGLCK G +++A +L   M   +++PD+VT++                   +LI+
Sbjct: 392 YTTMIDGLCKNGLLEEAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIY 451

Query: 297 GFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNP 356
            +C   +  EA      M   G   D  T +V++   C+ G+++EA   ++ M   G+ P
Sbjct: 452 NYCKMGNLKEALNAYAVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAP 511

Query: 357 NTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           ++ TF  ++D +  +G    A  +F  M S+G   + F+Y
Sbjct: 512 SSVTFDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTY 551



 Score =  115 bits (289), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 6/287 (2%)

Query: 110 FNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRIL 169
           F+LL     +       +  F+ +   G  P ++T N+++    K   V   +     ++
Sbjct: 112 FDLLIRVCLRENMVGDAVEAFRLMGFRGFSPSVFTCNMVLGSLVKDREVDLFWSFFKEMI 171

Query: 170 RSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTI 229
            +  +P+   F  L+  LC   +   A  L  K+   G  P  +TY+TL+N  C+ G   
Sbjct: 172 ANRVSPNVATFNILLNALCERGKFKSAGVLLRKMDETGHFPTAVTYNTLLNWYCKKGRYK 231

Query: 230 VALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVV 289
            A  L + MA+  G    VC     TY  +ID LC++    K   +  +M+   + P+ +
Sbjct: 232 AASELIDAMAS-KGIAADVC-----TYNVLIDDLCRKSRSAKGYLILRRMRKNMVYPNEI 285

Query: 290 TYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLLELM 349
           TYN+LI+G         A  +  EM    + P+ VT+N ++   C NG ++EA RL ++M
Sbjct: 286 TYNTLINGLVKEGKIGVATKVFEEMSLCNLLPNSVTYNTLIFGHCSNGNIEEALRLCDVM 345

Query: 350 ILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
           +  G+ PN  T+  L++G     +      +   M   G +    SY
Sbjct: 346 VSHGLRPNEVTYGALLNGISKHAQFGLVSSVLERMRMDGVRVGHISY 392



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 134/282 (47%), Gaps = 11/282 (3%)

Query: 93   IFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCF 152
            +++ M+    +P  LT  +L+ G   K+   D  +   +++   G   D +T N+L++  
Sbjct: 746  LYNEMIIHGFAPDRLTWHSLILG-YCKSGSLDVAVKFLRKITVEGFKVDCFTLNVLVSKL 804

Query: 153  CKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNV 212
            C+   +   F ++ ++     TP+   + SL  G        EA  +   L   G  P  
Sbjct: 805  CERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTCSFDEARCILHALLENGYAPTC 864

Query: 213  ITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKA 272
              ++TLI G+CR G+   A+ L +EM       GV      V  + II GL +    D+A
Sbjct: 865  KQFTTLIRGMCRMGNVKGAMELQDEMK----ILGV--SSQGVAMSAIIRGLARSRKTDEA 918

Query: 273  KELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL-LIEMMDQ-GVQPDVVTFNVIM 330
              +   M +  I P V T+ +L+H +C   + N A  L L  +M+Q  V+ DV  +NV++
Sbjct: 919  TRILGIMLEMQIIPTVATFTTLMHTYC--KEGNVAKALELRSVMEQCHVKLDVAAYNVLI 976

Query: 331  DELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTG 372
              LC +G +  A +L E M  R + PNTS +  L+D F  TG
Sbjct: 977  SGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTG 1018



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 7/307 (2%)

Query: 90  AFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILI 149
           A  +F+ MLN    P  + +FN+L    ++      V  +   + S  L  +L TYNIL+
Sbjct: 673 ALYMFEDMLNEGVQPDAI-AFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNILL 731

Query: 150 NCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCK 209
           + + K   ++    +   ++   F PD + + SLI G C    +  A     K+   G K
Sbjct: 732 HGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEGFK 791

Query: 210 PNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFV 269
            +  T + L++ LC      +A +L +++       GV   PN  TY ++ +G  +    
Sbjct: 792 VDCFTLNVLVSKLCERNEIKMAFDLVKQL----NMLGVT--PNVDTYNSLFNGFVRTCSF 845

Query: 270 DKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVI 329
           D+A+ +   + +    P    + +LI G C   +   A  L  EM   GV    V  + I
Sbjct: 846 DEARCILHALLENGYAPTCKQFTTLIRGMCRMGNVKGAMELQDEMKILGVSSQGVAMSAI 905

Query: 330 MDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGC 389
           +  L ++ K DEA+R+L +M+   + P  +TF+TLM  +C  G V  A EL   ME    
Sbjct: 906 IRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELRSVMEQCHV 965

Query: 390 KHTVFSY 396
           K  V +Y
Sbjct: 966 KLDVAAY 972



 Score =  111 bits (278), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 80/280 (28%), Positives = 127/280 (45%), Gaps = 6/280 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           L ++N+L    +K         L+  +   G  PD  T++ LI  +CK G +      L 
Sbjct: 724 LATYNILLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLR 783

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
           +I    F  D      L+  LC  + I  A  L  +L   G  PNV TY++L NG  RT 
Sbjct: 784 KITVEGFKVDCFTLNVLVSKLCERNEIKMAFDLVKQLNMLGVTPNVDTYNSLFNGFVRTC 843

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A  +   +   NG +   CK     +TT+I G+C+ G V  A EL  +MK   ++ 
Sbjct: 844 SFDEARCILHALLE-NG-YAPTCK----QFTTLIRGMCRMGNVKGAMELQDEMKILGVSS 897

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
             V  +++I G   +   +EA  +L  M++  + P V TF  +M   CK G + +A  L 
Sbjct: 898 QGVAMSAIIRGLARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKALELR 957

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMES 386
            +M    V  + + ++ L+ G C  G +  A +L+  ME 
Sbjct: 958 SVMEQCHVKLDVAAYNVLISGLCADGDIQAAFKLYEEMEQ 997



 Score =  106 bits (264), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 74/307 (24%), Positives = 140/307 (45%), Gaps = 6/307 (1%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNIL 148
           EA    D+M  M  +P  +T F+ +      +       S+F ++NS G  P  +TY  L
Sbjct: 496 EAEYFVDHMSRMGLAPSSVT-FDCIIDTYGNSGDALKAFSVFDKMNSLGHLPSQFTYEGL 554

Query: 149 INCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGC 208
           +      G ++   + + R     +   +  + +++        +  A AL  ++     
Sbjct: 555 LKGLLIGGHINEAKIFMHRPSSIPYAIGSTFYNTMLTLTSRSGNLSNAVALLDEMVMNNF 614

Query: 209 KPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGF 268
            P+  TY++LI GLCR G  + AL     + +G      +  PN   YT+++DGL KEG 
Sbjct: 615 VPDSFTYTSLIAGLCRKGKMVPAL-----LLSGRAIEKGLLSPNPAMYTSLVDGLLKEGH 669

Query: 269 VDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNV 328
              A  +F  M ++ + PD + +N L+  +      ++ N +L  M  + +  ++ T+N+
Sbjct: 670 SKAALYMFEDMLNEGVQPDAIAFNVLLDRYSRKGKMSKVNDILSTMRSRSLCFNLATYNI 729

Query: 329 IMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMG 388
           ++    K   M   S+L   MI+ G  P+  T+ +L+ G+C +G ++ A +    +   G
Sbjct: 730 LLHGYSKRHGMARCSKLYNEMIIHGFAPDRLTWHSLILGYCKSGSLDVAVKFLRKITVEG 789

Query: 389 CKHTVFS 395
            K   F+
Sbjct: 790 FKVDCFT 796



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 77/317 (24%), Positives = 132/317 (41%), Gaps = 25/317 (7%)

Query: 89  EAFCIFDYMLNMRPSPPPLTSFNLLFGCLA------------------KTKHYDTVLSLF 130
           EA  + D ML +  SP  +T   L+ G L                   K  +    L+ +
Sbjct: 407 EAVQLLDDMLKVSVSPDIVTFSVLVNGFLKTGLVPNRVLHSTLIYNYCKMGNLKEALNAY 466

Query: 131 KRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTPDAVAFTSLIKGLCAE 190
             +N +G   D +T ++L+  FC+ GR+      +  + R    P +V F  +I      
Sbjct: 467 AVMNQSGHVSDHFTSSVLVASFCRCGRLEEAEYFVDHMSRMGLAPSSVTFDCIIDTYGNS 526

Query: 191 SRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVALNLFEEMANGNGKFGVVCK 250
              ++A ++F K+ + G  P+  TY  L+ GL   GH   A       ++     G    
Sbjct: 527 GDALKAFSVFDKMNSLGHLPSQFTYEGLLKGLLIGGHINEAKIFMHRPSSIPYAIG---- 582

Query: 251 PNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINPDVVTYNSLIHGFCYANDWNEANCL 310
             +  Y T++    + G +  A  L  +M   N  PD  TY SLI G C       A  L
Sbjct: 583 --STFYNTMLTLTSRSGNLSNAVALLDEMVMNNFVPDSFTYTSLIAGLCRKGKMVPALLL 640

Query: 311 LIEMMDQGV-QPDVVTFNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFC 369
               +++G+  P+   +  ++D L K G    A  + E M+  GV P+   F+ L+D + 
Sbjct: 641 SGRAIEKGLLSPNPAMYTSLVDGLLKEGHSKAALYMFEDMLNEGVQPDAIAFNVLLDRYS 700

Query: 370 LTGRVNHAKELFVSMES 386
             G+++   ++  +M S
Sbjct: 701 RKGKMSKVNDILSTMRS 717



 Score = 53.1 bits (126), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 117  LAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSCFTP- 175
            LA+++  D    +   +    + P + T+  L++ +CK G V+   + L  ++  C    
Sbjct: 909  LARSRKTDEATRILGIMLEMQIIPTVATFTTLMHTYCKEGNVAKA-LELRSVMEQCHVKL 967

Query: 176  DAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIV 230
            D  A+  LI GLCA+  I  A  L+ +++     PN   Y  LI+    TG+ IV
Sbjct: 968  DVAAYNVLISGLCADGDIQAAFKLYEEMEQRDIWPNTSIYIVLIDSFLCTGNYIV 1022


>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
          Length = 350

 Score =  158 bits (400), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 93/290 (32%), Positives = 149/290 (51%), Gaps = 6/290 (2%)

Query: 107 LTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLG 166
           ++SFN++   L      D V+S+++ +  +G   D  TY IL++ FCK G +     VL 
Sbjct: 33  VSSFNIMMRGLFDNDKVDEVISIWELMKKSGFVEDSITYGILVHGFCKNGYIDKSLHVLE 92

Query: 167 RILRSCFTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTG 226
              +     DA A++++I GLC E+ +  A ++   +   GCKPN   Y+TLINGL    
Sbjct: 93  MAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGAS 152

Query: 227 HTIVALNLFEEMANGNGKFGVVCKPNTVTYTTIIDGLCKEGFVDKAKELFLQMKDKNINP 286
               A+ +F EM        + C P  +TY T+I+GLCK     +A  L  ++ DK +NP
Sbjct: 153 KFEDAIRVFREMGT------MHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNP 206

Query: 287 DVVTYNSLIHGFCYANDWNEANCLLIEMMDQGVQPDVVTFNVIMDELCKNGKMDEASRLL 346
            V+TY+ L+ G C  +   +A  L  ++  +G +PDV   N+++  LC  GKM  A  L 
Sbjct: 207 GVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLY 266

Query: 347 ELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSMESMGCKHTVFSY 396
             M      PN  + +TLM+GF   G + +A  ++  +   G +  + SY
Sbjct: 267 FDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWARILRNGLEPDIISY 316



 Score = 80.5 bits (197), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 57/212 (26%), Positives = 97/212 (45%), Gaps = 16/212 (7%)

Query: 62  DRAS--LEQFLKERCKSSGQ-------GDITAITPNEAFCIFDYMLNMRPSPPPLTSFNL 112
           DRA   L   +K  CK +         G + A    +A  +F  M  M  SP  +T +N 
Sbjct: 120 DRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIIT-YNT 178

Query: 113 LFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVVLGRILRSC 172
           L   L K + +    +L K L   GL P + TY++L+   C   +V     +  ++    
Sbjct: 179 LINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKG 238

Query: 173 FTPDAVAFTSLIKGLCAESRIMEAAALFTKLKAFGCKPNVITYSTLINGLCRTGHTIVAL 232
           F PD      LI GLC+  ++  A +L+  +  + C PN+++++TL+ G  + G    AL
Sbjct: 239 FKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNAL 298

Query: 233 NLFEEMANGNGKFGVVCKPNTVTYTTIIDGLC 264
            ++  +   NG      +P+ ++Y   + GLC
Sbjct: 299 VIWARILR-NG-----LEPDIISYNITLKGLC 324



 Score = 56.6 bits (135), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/92 (31%), Positives = 48/92 (52%)

Query: 105 PPLTSFNLLFGCLAKTKHYDTVLSLFKRLNSTGLFPDLYTYNILINCFCKMGRVSHGFVV 164
           P +   N+L   L         LSL+  +N     P+L ++N L+  F K G + +  V+
Sbjct: 241 PDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVI 300

Query: 165 LGRILRSCFTPDAVAFTSLIKGLCAESRIMEA 196
             RILR+   PD +++   +KGLC+ +RI +A
Sbjct: 301 WARILRNGLEPDIISYNITLKGLCSCNRISDA 332



 Score = 48.5 bits (114), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)

Query: 269 VDKAKELF--LQMKDKNINPDVVTYNSLIHGFCYANDWNEANCLLIEMMDQ-GVQPDVVT 325
           V K K+ F   +M     N  V ++N ++ G  + ND  +    + E+M + G   D +T
Sbjct: 12  VAKIKDCFELWEMMGSEGNRSVSSFNIMMRGL-FDNDKVDEVISIWELMKKSGFVEDSIT 70

Query: 326 FNVIMDELCKNGKMDEASRLLELMILRGVNPNTSTFSTLMDGFCLTGRVNHAKELFVSME 385
           + +++   CKNG +D++  +LE+   +G   +   +S +++G C    ++ A  +   M 
Sbjct: 71  YGILVHGFCKNGYIDKSLHVLEMAEQKGGVVDAFAYSAMINGLCKEANLDRAVSVLNGMI 130

Query: 386 SMGCKHTVFSY 396
             GCK     Y
Sbjct: 131 KSGCKPNAHVY 141


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.136    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,842,137,546
Number of Sequences: 23463169
Number of extensions: 230095750
Number of successful extensions: 925088
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7792
Number of HSP's successfully gapped in prelim test: 4721
Number of HSP's that attempted gapping in prelim test: 713992
Number of HSP's gapped (non-prelim): 75551
length of query: 396
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 251
effective length of database: 8,957,035,862
effective search space: 2248216001362
effective search space used: 2248216001362
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 78 (34.7 bits)